Query 013672
Match_columns 438
No_of_seqs 218 out of 1676
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3.6E-70 7.9E-75 547.5 43.5 396 27-438 18-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 7E-59 1.5E-63 468.0 35.7 309 81-437 109-450 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 3.4E-57 7.3E-62 451.5 35.5 336 87-436 42-397 (398)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-56 4.2E-61 434.3 31.8 298 84-432 2-317 (317)
5 cd05486 Cathespin_E Cathepsin 100.0 1.7E-56 3.7E-61 434.5 29.2 293 92-432 1-316 (316)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 6.9E-56 1.5E-60 432.0 32.1 298 88-432 3-325 (325)
7 cd05472 cnd41_like Chloroplast 100.0 1E-55 2.2E-60 426.0 32.7 291 91-435 1-299 (299)
8 cd05477 gastricsin Gastricsins 100.0 1.4E-55 3.1E-60 428.6 32.9 296 89-433 1-318 (318)
9 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-55 4E-60 428.7 30.7 294 90-436 2-326 (326)
10 cd05487 renin_like Renin stimu 100.0 4.2E-55 9E-60 426.4 31.6 298 87-433 4-326 (326)
11 cd05488 Proteinase_A_fungi Fun 100.0 5.1E-55 1.1E-59 424.7 31.3 297 84-432 2-320 (320)
12 cd06098 phytepsin Phytepsin, a 100.0 1.4E-54 3.1E-59 420.9 30.7 289 84-432 2-317 (317)
13 PTZ00147 plasmepsin-1; Provisi 100.0 3.9E-54 8.5E-59 430.5 34.0 302 80-434 127-450 (453)
14 cd05485 Cathepsin_D_like Cathe 100.0 3.2E-54 6.9E-59 420.4 31.5 298 87-432 7-329 (329)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.2E-53 7E-58 423.0 34.0 302 80-434 126-449 (450)
16 cd06097 Aspergillopepsin_like 100.0 1.3E-52 2.8E-57 400.1 26.2 263 92-432 1-278 (278)
17 cd05489 xylanase_inhibitor_I_l 100.0 7.5E-52 1.6E-56 406.4 31.5 318 98-433 2-361 (362)
18 cd05473 beta_secretase_like Be 100.0 3.9E-52 8.4E-57 411.4 29.6 312 90-438 2-350 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.3E-51 5.1E-56 388.6 28.5 257 91-435 1-265 (265)
20 cd05475 nucellin_like Nucellin 100.0 7.9E-50 1.7E-54 379.5 27.5 251 90-435 1-273 (273)
21 PF00026 Asp: Eukaryotic aspar 100.0 7.9E-50 1.7E-54 388.3 20.5 294 91-433 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.2E-48 4.8E-53 374.4 28.4 270 91-433 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 2E-45 4.3E-50 351.5 28.8 267 92-432 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.3E-30 1.8E-34 222.7 14.5 153 92-254 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.7E-25 3.7E-30 195.3 14.1 151 280-432 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 6.6E-24 1.4E-28 173.1 12.3 106 94-219 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.3 1.9E-06 4.1E-11 67.8 6.9 94 90-221 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0018 4E-08 53.3 8.2 97 87-221 7-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.011 2.4E-07 45.4 8.4 89 94-220 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.8 0.053 1.1E-06 44.8 8.0 95 311-430 29-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.7 0.08 1.7E-06 43.7 8.7 93 88-221 13-107 (124)
32 PF11925 DUF3443: Protein of u 95.3 0.38 8.1E-06 46.6 12.7 106 91-222 23-149 (370)
33 cd05484 retropepsin_like_LTR_2 94.9 0.14 3E-06 39.7 7.2 28 92-121 1-28 (91)
34 cd06095 RP_RTVL_H_like Retrope 93.2 0.49 1.1E-05 36.1 7.3 25 95-121 2-26 (86)
35 TIGR02281 clan_AA_DTGA clan AA 93.1 0.34 7.3E-06 39.8 6.6 37 277-331 8-44 (121)
36 COG3577 Predicted aspartyl pro 91.4 0.59 1.3E-05 41.5 6.2 88 82-202 95-183 (215)
37 PF08284 RVP_2: Retroviral asp 90.9 0.69 1.5E-05 38.8 6.1 99 311-433 34-132 (135)
38 PF13975 gag-asp_proteas: gag- 90.1 0.44 9.4E-06 35.1 3.8 34 88-123 5-38 (72)
39 PF12384 Peptidase_A2B: Ty3 tr 89.1 1.9 4.2E-05 36.8 7.2 25 311-335 47-71 (177)
40 TIGR03698 clan_AA_DTGF clan AA 86.4 3.3 7.2E-05 33.1 6.9 24 405-428 84-107 (107)
41 PF00077 RVP: Retroviral aspar 83.6 1.4 3.1E-05 34.4 3.6 27 93-121 7-33 (100)
42 PF13650 Asp_protease_2: Aspar 81.4 1.9 4.1E-05 32.6 3.5 21 311-331 11-31 (90)
43 PF02160 Peptidase_A3: Caulifl 78.1 4.5 9.7E-05 36.1 5.1 95 311-432 22-117 (201)
44 PF07172 GRP: Glycine rich pro 76.5 2 4.3E-05 33.5 2.2 20 8-27 3-22 (95)
45 cd05484 retropepsin_like_LTR_2 76.3 3.6 7.8E-05 31.6 3.6 30 288-332 5-34 (91)
46 PF13975 gag-asp_proteas: gag- 75.8 4.5 9.8E-05 29.6 3.9 21 311-331 21-41 (72)
47 cd05482 HIV_retropepsin_like R 75.7 3.3 7.1E-05 31.8 3.1 25 95-121 2-26 (87)
48 cd06095 RP_RTVL_H_like Retrope 71.8 4.8 0.0001 30.6 3.3 21 311-331 11-31 (86)
49 cd05483 retropepsin_like_bacte 71.6 6.5 0.00014 29.9 4.1 21 311-331 15-35 (96)
50 COG3577 Predicted aspartyl pro 61.8 15 0.00033 32.8 4.7 36 277-330 102-137 (215)
51 PF00077 RVP: Retroviral aspar 54.5 11 0.00025 29.2 2.6 18 311-328 18-35 (100)
52 PF12384 Peptidase_A2B: Ty3 tr 53.5 17 0.00036 31.3 3.4 29 93-121 34-62 (177)
53 cd06094 RP_Saci_like RP_Saci_l 46.8 83 0.0018 24.2 6.0 20 310-329 10-29 (89)
54 PF09668 Asp_protease: Asparty 46.0 33 0.00072 28.2 4.0 32 88-121 21-52 (124)
55 cd05481 retropepsin_like_LTR_1 44.8 26 0.00055 27.1 3.1 22 311-332 12-33 (93)
56 COG5550 Predicted aspartyl pro 44.3 14 0.00031 30.1 1.6 21 312-332 29-50 (125)
57 PF09668 Asp_protease: Asparty 42.9 30 0.00066 28.4 3.4 29 287-330 28-56 (124)
58 PF15240 Pro-rich: Proline-ric 42.3 15 0.00032 32.1 1.5 19 12-30 1-19 (179)
59 PF08139 LPAM_1: Prokaryotic m 30.2 73 0.0016 18.2 2.5 16 8-23 3-18 (25)
60 TIGR03698 clan_AA_DTGF clan AA 26.6 69 0.0015 25.4 2.9 67 94-194 2-73 (107)
61 KOG0012 DNA damage inducible p 24.7 4.4E+02 0.0094 25.9 8.2 37 397-433 308-346 (380)
62 cd05475 nucellin_like Nucellin 24.0 97 0.0021 29.0 3.9 32 90-121 157-194 (273)
63 cd05476 pepsin_A_like_plant Ch 21.3 1.1E+02 0.0025 28.4 3.8 33 89-121 145-193 (265)
64 PF08284 RVP_2: Retroviral asp 20.8 1.2E+02 0.0026 25.2 3.4 31 88-120 18-48 (135)
65 PF10731 Anophelin: Thrombin i 20.3 72 0.0016 22.3 1.6 18 13-30 4-22 (65)
66 cd00303 retropepsin_like Retro 20.3 88 0.0019 22.0 2.3 22 95-118 2-23 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.6e-70 Score=547.48 Aligned_cols=396 Identities=43% Similarity=0.743 Sum_probs=325.1
Q ss_pred cccCCcceEEEEEecCCC------CCCChHHHHHHHHHhhHHHHHHHhhhccccccCCCccccceecCCccEEEEEEeCC
Q 013672 27 AFSASAGFKVKLKSVDFG------KKLSTFERVLHGMKRGQHRLQRFNAMSLAASDTASDLKSSVHAGTGEYLMDLSIGS 100 (438)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~Y~~~v~iGt 100 (438)
..+...+++++|+|+++. ++.+..++++++++|+++|.+++.++... ......++...+++|+++|.|||
T Consensus 18 ~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Y~v~i~iGT 93 (431)
T PLN03146 18 AEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS----PNDPQSDLISNGGEYLMNISIGT 93 (431)
T ss_pred ccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc----CCccccCcccCCccEEEEEEcCC
Confidence 344556799999999863 24556799999999999999888644221 01222234467889999999999
Q ss_pred CCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCC-CCCCCCcceEeeecCCCCeEE
Q 013672 101 PAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQ-ECNANNACEYIYSYGDTSSSQ 179 (438)
Q Consensus 101 P~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~-~c~~~~~~~~~~~Y~dg~~~~ 179 (438)
|+|++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|.++.|...+.. .|..++.|.|.+.|+||+.+.
T Consensus 94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK 173 (431)
T ss_pred CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence 9999999999999999999999999998888999999999999999999999877654 476666799999999999889
Q ss_pred EEEEEEEEEECCc-----ccceeEEEeeEcCCCCCcCCcceeeecCCCCCcchhhccC---CeeeEeecCCCC--CcceE
Q 013672 180 GVLATETLTFGDV-----SVPNIGFGCGSDNEGDGFSQGAGLVGLGRGPLSLVSQLKE---PKFSYCLTSIDA--AKTST 249 (438)
Q Consensus 180 G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~~---~~Fs~~l~~~~~--~~~g~ 249 (438)
|.+++|+|++++. .++++.|||++...+.+....+||||||++++|+++|+.. ++|||||.+..+ ...|.
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~ 253 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSK 253 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcce
Confidence 9999999999973 5889999999987764333679999999999999999653 589999975332 35799
Q ss_pred EEeCCCccCCCCCC-CCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHH
Q 013672 250 LLMGSLASANSSSS-DQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAF 328 (438)
Q Consensus 250 l~fGg~d~~~~~~~-g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~ 328 (438)
|+||+.. + +. +.+.|+|++.+. .+.+|+|.|++|+||++++.++...+. ..+.+++||||||++++||+++|
T Consensus 254 l~fG~~~--~--~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y 326 (431)
T PLN03146 254 INFGTNA--I--VSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFY 326 (431)
T ss_pred EEeCCcc--c--cCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHH
Confidence 9999953 2 33 358999998642 257999999999999999887666553 24456799999999999999999
Q ss_pred HHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEecCCCeEEEEEEcCCCcee
Q 013672 329 DLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADSSMGLACLAMGSSSGMSI 408 (438)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~i 408 (438)
+++.+++...+...... .....++.||..... ..+|+|+|+|+|+++.|++++|+++. ..+..|+++.+..+.||
T Consensus 327 ~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~---~~~P~i~~~F~Ga~~~l~~~~~~~~~-~~~~~Cl~~~~~~~~~I 401 (431)
T PLN03146 327 SELESAVEEAIGGERVS-DPQGLLSLCYSSTSD---IKLPIITAHFTGADVKLQPLNTFVKV-SEDLVCFAMIPTSSIAI 401 (431)
T ss_pred HHHHHHHHHHhccccCC-CCCCCCCccccCCCC---CCCCeEEEEECCCeeecCcceeEEEc-CCCcEEEEEecCCCceE
Confidence 99999998887532222 223346789985422 37899999999999999999999973 45678999887767899
Q ss_pred ecHhhhcceEEEEECCCCEEEEeeCCCCCC
Q 013672 409 FGNVQQQNMLVLYDLAKETLSFIPTQCDKL 438 (438)
Q Consensus 409 lG~~fl~~~y~vfD~~~~~iGfa~~~c~~~ 438 (438)
||+.|||++|++||++++|||||+++|.++
T Consensus 402 lG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 402 FGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred ECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 999999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7e-59 Score=468.03 Aligned_cols=309 Identities=22% Similarity=0.400 Sum_probs=251.7
Q ss_pred ccccee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 013672 81 LKSSVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQE 159 (438)
Q Consensus 81 ~~~p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~ 159 (438)
...|+. +.+.+|+++|+||||||+|.|++||||+++||+|..|..|.|..++.|||++|+||+...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~--------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE--------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc---------
Confidence 456666 7899999999999999999999999999999999999876666778999999999998432110
Q ss_pred CCCCCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCc------------
Q 013672 160 CNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLS------------ 225 (438)
Q Consensus 160 c~~~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~s------------ 225 (438)
...+.+.|++|+ +.|.+++|+|++|+.++++|.||+++...+..+ ...|||||||++.++
T Consensus 180 -----~~~~~i~YGsGs-~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~ 253 (482)
T PTZ00165 180 -----SAETYIQYGTGE-CVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVD 253 (482)
T ss_pred -----cceEEEEeCCCc-EEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHH
Confidence 125779999997 889999999999999999999999998755323 268999999998752
Q ss_pred -chhh--ccCCeeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCc
Q 013672 226 -LVSQ--LKEPKFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNF 302 (438)
Q Consensus 226 -l~~q--l~~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 302 (438)
+.+| ++++.||+||.+.. ...|+|+|||+|+.+....+++.|+|+.. ..+|+|.+++|+|+++.+.....
T Consensus 254 ~l~~qgli~~~~FS~yL~~~~-~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~~~~-- 326 (482)
T PTZ00165 254 NIKKQNLLKRNIFSFYMSKDL-NQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGFCDR-- 326 (482)
T ss_pred HHHHcCCcccceEEEEeccCC-CCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeeecCC--
Confidence 3333 56799999997633 35799999999986521157899999963 67999999999999987665322
Q ss_pred ccccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCc-----
Q 013672 303 ALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGA----- 377 (438)
Q Consensus 303 ~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~----- 377 (438)
...+|+||||+++++|++++++|.++++.. .+|+.. ..+|+|+|+|+|.
T Consensus 327 ------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~~------~~lP~itf~f~g~~g~~v 380 (482)
T PTZ00165 327 ------KCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSNK------DSLPRISFVLEDVNGRKI 380 (482)
T ss_pred ------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------cccccc------ccCCceEEEECCCCCceE
Confidence 246999999999999999999999987432 256654 2789999999864
Q ss_pred EEEeCCCCeEEEe---cCCCeEEE-EEEcC------CCceeecHhhhcceEEEEECCCCEEEEeeCCCCC
Q 013672 378 DVDLPPENYMIAD---SSMGLACL-AMGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIPTQCDK 437 (438)
Q Consensus 378 ~~~l~~~~y~~~~---~~~~~~Cl-~~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~~ 437 (438)
+++|+|++|+++. ...+..|+ ++++. ++.||||++|||++|+|||.+++|||||+++|+.
T Consensus 381 ~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 381 KFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred EEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 8999999999973 23446895 56642 2579999999999999999999999999999863
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-57 Score=451.46 Aligned_cols=336 Identities=44% Similarity=0.861 Sum_probs=283.1
Q ss_pred cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCC-CCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCc
Q 013672 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ-VCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNA 165 (438)
Q Consensus 87 ~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~-~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~ 165 (438)
...+.|+++|.||||||+|.|++||||+++||+|..|. .|..+..+.|+|++|+||+...|.++.|...... |..++.
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~~~~~ 120 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CSPNSS 120 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cccCCc
Confidence 56789999999999999999999999999999999999 7987655669999999999999999999999877 767778
Q ss_pred ceEeeecCCCCeEEEEEEEEEEEECC---cccceeEEEeeEcCCCC-Cc-CCcceeeecCCCCCcchhhccC-----Cee
Q 013672 166 CEYIYSYGDTSSSQGVLATETLTFGD---VSVPNIGFGCGSDNEGD-GF-SQGAGLVGLGRGPLSLVSQLKE-----PKF 235 (438)
Q Consensus 166 ~~~~~~Y~dg~~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~-~~-~~~~GIlGLg~~~~sl~~ql~~-----~~F 235 (438)
|.|.+.|+||+.++|++++|+|++++ ..++++.|||+..+.+. .. ...+||||||+..+++.+|+.. ++|
T Consensus 121 C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~F 200 (398)
T KOG1339|consen 121 CPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVF 200 (398)
T ss_pred CceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeE
Confidence 99999999988899999999999998 78888999999998763 12 4689999999999999999654 349
Q ss_pred eEeecCCCCC--cceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEE
Q 013672 236 SYCLTSIDAA--KTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLI 313 (438)
Q Consensus 236 s~~l~~~~~~--~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~i 313 (438)
|+||.+.+.. ..|.|+||+.|..+ +.+.+.|+|++.++. .+|.|.+++|+|+++. .+....+..+ .+++|
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~--~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~i 272 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSH--YTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAI 272 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccC--cCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecC---CCCEE
Confidence 9999987543 48999999999998 788999999987543 6999999999999976 5444444322 46899
Q ss_pred EccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEc-CcEEEeCCCCeEEEecC
Q 013672 314 IDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK-GADVDLPPENYMIADSS 392 (438)
Q Consensus 314 iDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~ 392 (438)
+||||++++||+++|++|.+++...+.. .. ....+...|+...-.. ..+|+|+|+|+ |+.+.+++++|+++...
T Consensus 273 iDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~-~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y~~~~~~ 347 (398)
T KOG1339|consen 273 IDSGTSLTYLPTSAYNALREAIGAEVSV--VG-TDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNYLVEVSD 347 (398)
T ss_pred EECCcceeeccHHHHHHHHHHHHhheec--cc-cCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccceEEEECC
Confidence 9999999999999999999999986311 00 2344567888875221 13999999999 79999999999998543
Q ss_pred CCeEEEEEEcCC---CceeecHhhhcceEEEEECC-CCEEEEee--CCCC
Q 013672 393 MGLACLAMGSSS---GMSIFGNVQQQNMLVLYDLA-KETLSFIP--TQCD 436 (438)
Q Consensus 393 ~~~~Cl~~~~~~---~~~ilG~~fl~~~y~vfD~~-~~~iGfa~--~~c~ 436 (438)
....|+++.... ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 348 ~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 348 GGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 333399966543 37999999999999999999 99999999 7775
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-56 Score=434.29 Aligned_cols=298 Identities=23% Similarity=0.418 Sum_probs=251.1
Q ss_pred cee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 013672 84 SVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNA 162 (438)
Q Consensus 84 p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~ 162 (438)
||. ..+..|+++|.||||+|++.|++||||+++||+|..|..|.++.++.|+|++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~---------------- 65 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG---------------- 65 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC----------------
Confidence 455 358999999999999999999999999999999999987666677899999999999865
Q ss_pred CCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcC--CcceeeecCCCCCc----------chhh-
Q 013672 163 NNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFS--QGAGLVGLGRGPLS----------LVSQ- 229 (438)
Q Consensus 163 ~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~--~~~GIlGLg~~~~s----------l~~q- 229 (438)
+.|.+.|++|+ +.|.+++|+|++|+..++++.|||++...+.... ..+||||||++.++ |.+|
T Consensus 66 ---~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g 141 (317)
T cd05478 66 ---QPLSIQYGTGS-MTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQG 141 (317)
T ss_pred ---cEEEEEECCce-EEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCC
Confidence 68999999997 8999999999999999999999999877654322 57999999987543 3333
Q ss_pred -ccCCeeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCC
Q 013672 230 -LKEPKFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDG 308 (438)
Q Consensus 230 -l~~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 308 (438)
+.+++||+||.+.. ...|.|+|||+|+++ +.|++.|+|+. ...+|.|.+++++|+++.+....
T Consensus 142 ~i~~~~FS~~L~~~~-~~~g~l~~Gg~d~~~--~~g~l~~~p~~----~~~~w~v~l~~v~v~g~~~~~~~--------- 205 (317)
T cd05478 142 LVSQDLFSVYLSSNG-QQGSVVTFGGIDPSY--YTGSLNWVPVT----AETYWQITVDSVTINGQVVACSG--------- 205 (317)
T ss_pred CCCCCEEEEEeCCCC-CCCeEEEEcccCHHH--ccCceEEEECC----CCcEEEEEeeEEEECCEEEccCC---------
Confidence 56799999998743 356999999999988 89999999995 36799999999999999875432
Q ss_pred CCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEE
Q 013672 309 SGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMI 388 (438)
Q Consensus 309 ~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~ 388 (438)
...+||||||+++++|++++++|.++++... . ...+|.++|+.. ..+|+|+|+|+|++++||+++|+.
T Consensus 206 ~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~--------~---~~~~~~~~C~~~-~~~P~~~f~f~g~~~~i~~~~y~~ 273 (317)
T cd05478 206 GCQAIVDTGTSLLVGPSSDIANIQSDIGASQ--------N---QNGEMVVNCSSI-SSMPDVVFTINGVQYPLPPSAYIL 273 (317)
T ss_pred CCEEEECCCchhhhCCHHHHHHHHHHhCCcc--------c---cCCcEEeCCcCc-ccCCcEEEEECCEEEEECHHHhee
Confidence 2369999999999999999999999986541 1 123466677643 378999999999999999999998
Q ss_pred EecCCCeEEEE-EEcCC--CceeecHhhhcceEEEEECCCCEEEEee
Q 013672 389 ADSSMGLACLA-MGSSS--GMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 389 ~~~~~~~~Cl~-~~~~~--~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
+. ...|++ +++.. +.||||++|||++|+|||++++|||||+
T Consensus 274 ~~---~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 274 QD---QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cC---CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 63 467875 66543 5799999999999999999999999996
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.7e-56 Score=434.49 Aligned_cols=293 Identities=25% Similarity=0.431 Sum_probs=242.9
Q ss_pred EEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEeee
Q 013672 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIYS 171 (438)
Q Consensus 92 Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~ 171 (438)
|+++|+||||+|+++|+|||||+++||+|..|..+.|..++.|||++|+|++... +.|.+.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~-------------------~~~~i~ 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG-------------------EAFSIQ 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC-------------------cEEEEE
Confidence 8999999999999999999999999999999985444556799999999998865 799999
Q ss_pred cCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcc----------hhh--ccCCeeeE
Q 013672 172 YGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSL----------VSQ--LKEPKFSY 237 (438)
Q Consensus 172 Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl----------~~q--l~~~~Fs~ 237 (438)
|++|. +.|.+++|+|++++..++++.||++....+..+ ...+||||||++..+. .+| +..+.||+
T Consensus 62 Yg~g~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~ 140 (316)
T cd05486 62 YGTGS-LTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSV 140 (316)
T ss_pred eCCcE-EEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEE
Confidence 99996 899999999999999999999999877654322 2679999999987652 334 56789999
Q ss_pred eecCCCC-CcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEcc
Q 013672 238 CLTSIDA-AKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDS 316 (438)
Q Consensus 238 ~l~~~~~-~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 316 (438)
||.+... ...|.|+|||+|+++ +.|++.|+|+. ..++|.|.+++|+|+++.+.... ...+||||
T Consensus 141 ~L~~~~~~~~~g~l~fGg~d~~~--~~g~l~~~pi~----~~~~w~v~l~~i~v~g~~~~~~~---------~~~aiiDT 205 (316)
T cd05486 141 YMSRNPNSADGGELVFGGFDTSR--FSGQLNWVPVT----VQGYWQIQLDNIQVGGTVIFCSD---------GCQAIVDT 205 (316)
T ss_pred EEccCCCCCCCcEEEEcccCHHH--cccceEEEECC----CceEEEEEeeEEEEecceEecCC---------CCEEEECC
Confidence 9987432 357999999999988 89999999996 36799999999999998764322 13699999
Q ss_pred ccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEe-cCCCe
Q 013672 317 GTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIAD-SSMGL 395 (438)
Q Consensus 317 Gt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~-~~~~~ 395 (438)
||+++++|++++++|.+.+++. . ...+|.++|+.. ..+|+|+|+|+|+.++|++++|++.. .....
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~---------~---~~~~~~~~C~~~-~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGAT---------A---TDGEYGVDCSTL-SLMPSVTFTINGIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCc---------c---cCCcEEEecccc-ccCCCEEEEECCEEEEeCHHHeEEecccCCCC
Confidence 9999999999999998887543 1 112366677642 37899999999999999999999863 22346
Q ss_pred EEEE-EEcC------CCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 396 ACLA-MGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 396 ~Cl~-~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.|++ ++.. .+.||||++|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 7975 5432 24799999999999999999999999996
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.9e-56 Score=432.04 Aligned_cols=298 Identities=20% Similarity=0.359 Sum_probs=242.8
Q ss_pred CCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCC--CCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCc
Q 013672 88 GTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVC--FDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNA 165 (438)
Q Consensus 88 ~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C--~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~ 165 (438)
.+.+|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|+|++|+||+...
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------- 63 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------- 63 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC-------------------
Confidence 478999999999999999999999999999999999732 23345799999999998743
Q ss_pred ceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcch----------hh--cc
Q 013672 166 CEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSLV----------SQ--LK 231 (438)
Q Consensus 166 ~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl~----------~q--l~ 231 (438)
+.|.+.|++|+ +.|.+++|+|++++..++++.||+++...+..+ ...+||||||++..+.. +| +.
T Consensus 64 ~~~~i~Yg~G~-~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~ 142 (325)
T cd05490 64 TEFAIQYGSGS-LSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVE 142 (325)
T ss_pred cEEEEEECCcE-EEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCC
Confidence 79999999996 899999999999999999999999987765322 26799999999876532 22 55
Q ss_pred CCeeeEeecCCCC-CcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCC
Q 013672 232 EPKFSYCLTSIDA-AKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSG 310 (438)
Q Consensus 232 ~~~Fs~~l~~~~~-~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 310 (438)
++.||+||.+... ...|+|+|||+|+.+ +.|++.|+|+. ...+|.|++++|+|++....... ..
T Consensus 143 ~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~--~~g~l~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~---------~~ 207 (325)
T cd05490 143 QNVFSFYLNRDPDAQPGGELMLGGTDPKY--YTGDLHYVNVT----RKAYWQIHMDQVDVGSGLTLCKG---------GC 207 (325)
T ss_pred CCEEEEEEeCCCCCCCCCEEEECccCHHH--cCCceEEEEcC----cceEEEEEeeEEEECCeeeecCC---------CC
Confidence 6999999986432 247999999999988 88999999995 35799999999999876432111 24
Q ss_pred cEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEe
Q 013672 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIAD 390 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~ 390 (438)
.+||||||+++++|++++++|.+++++. +.. ..+|.++|+.. ..+|+|+|+|+|+.++|++++|+++.
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~~---~~~--------~~~~~~~C~~~-~~~P~i~f~fgg~~~~l~~~~y~~~~ 275 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGAV---PLI--------QGEYMIDCEKI-PTLPVISFSLGGKVYPLTGEDYILKV 275 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCCc---ccc--------CCCEEeccccc-ccCCCEEEEECCEEEEEChHHeEEec
Confidence 6999999999999999999999988643 111 12355666642 37899999999999999999999874
Q ss_pred cC-CCeEEEE-EEc------CCCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 391 SS-MGLACLA-MGS------SSGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 391 ~~-~~~~Cl~-~~~------~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.. ....|++ ++. ..+.||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 32 2357975 543 125799999999999999999999999996
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1e-55 Score=426.00 Aligned_cols=291 Identities=44% Similarity=0.779 Sum_probs=242.4
Q ss_pred cEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEee
Q 013672 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIY 170 (438)
Q Consensus 91 ~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 170 (438)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------------Ceeee
Confidence 599999999999999999999999999987654 37899
Q ss_pred ecCCCCeEEEEEEEEEEEECCc-ccceeEEEeeEcCCCCCcCCcceeeecCCCCCcchhhcc---CCeeeEeecCCCCCc
Q 013672 171 SYGDTSSSQGVLATETLTFGDV-SVPNIGFGCGSDNEGDGFSQGAGLVGLGRGPLSLVSQLK---EPKFSYCLTSIDAAK 246 (438)
Q Consensus 171 ~Y~dg~~~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~---~~~Fs~~l~~~~~~~ 246 (438)
.|++|+.++|.+++|+|+|++. .++++.|||+....+. +...+||||||+..+++.+|+. +++||+||.+.....
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~ 117 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGL-FGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSS 117 (299)
T ss_pred EeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCc-cCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCC
Confidence 9999997899999999999998 8999999999887654 3378999999999999998864 479999998743245
Q ss_pred ceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHH
Q 013672 247 TSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDS 326 (438)
Q Consensus 247 ~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~ 326 (438)
.|+|+|||+|+. .|++.|+|++.++..+.+|.|++++|+|+++.+.++... ...+.++|||||++++||++
T Consensus 118 ~G~l~fGg~d~~----~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 118 SGYLSFGAAASV----PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CceEEeCCcccc----CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHH
Confidence 799999999976 489999999876545679999999999999987654211 12357999999999999999
Q ss_pred HHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEc-CcEEEeCCCCeEEEecCCCeEEEEEEcC--
Q 013672 327 AFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK-GADVDLPPENYMIADSSMGLACLAMGSS-- 403 (438)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~-- 403 (438)
++++|.+++..++...... .....+..||..+|... ..+|+|+|+|+ |++++|++++|+++....+..|+++.+.
T Consensus 189 ~~~~l~~~l~~~~~~~~~~-~~~~~~~~C~~~~~~~~-~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~ 266 (299)
T cd05472 189 AYAALRDAFRAAMAAYPRA-PGFSILDTCYDLSGFRS-VSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSD 266 (299)
T ss_pred HHHHHHHHHHHHhccCCCC-CCCCCCCccCcCCCCcC-CccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCC
Confidence 9999999998875321111 11222336998876542 47999999998 7999999999998544556789988765
Q ss_pred -CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 013672 404 -SGMSIFGNVQQQNMLVLYDLAKETLSFIPTQC 435 (438)
Q Consensus 404 -~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 435 (438)
.+.||||+.|||++|+|||++++|||||+++|
T Consensus 267 ~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 267 DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 25799999999999999999999999999999
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-55 Score=428.55 Aligned_cols=296 Identities=24% Similarity=0.454 Sum_probs=247.4
Q ss_pred CccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceE
Q 013672 89 TGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEY 168 (438)
Q Consensus 89 ~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 168 (438)
+..|+++|.||||+|++.|++||||+++||+|..|..+.|..++.|||++|+||+... |.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~-------------------~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG-------------------ETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC-------------------cEE
Confidence 4689999999999999999999999999999999986555567899999999998765 799
Q ss_pred eeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCc------chhh------ccCCe
Q 013672 169 IYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLS------LVSQ------LKEPK 234 (438)
Q Consensus 169 ~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~s------l~~q------l~~~~ 234 (438)
.+.|++|+ +.|.+++|+|++|+.+++++.|||++...+..+ ...+||||||++..+ +++| +.++.
T Consensus 62 ~~~Yg~Gs-~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~ 140 (318)
T cd05477 62 SLQYGSGS-LTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPI 140 (318)
T ss_pred EEEECCcE-EEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCE
Confidence 99999997 899999999999999999999999998654322 367999999986443 3333 56799
Q ss_pred eeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEE
Q 013672 235 FSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLII 314 (438)
Q Consensus 235 Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 314 (438)
||+||.+......|.|+|||+|+++ +.+++.|+|+. ...+|.|.+++|+|+++++..... ...+||
T Consensus 141 FS~~L~~~~~~~~g~l~fGg~d~~~--~~g~l~~~pv~----~~~~w~v~l~~i~v~g~~~~~~~~--------~~~~ii 206 (318)
T cd05477 141 FSFYLSGQQGQQGGELVFGGVDNNL--YTGQIYWTPVT----SETYWQIGIQGFQINGQATGWCSQ--------GCQAIV 206 (318)
T ss_pred EEEEEcCCCCCCCCEEEEcccCHHH--cCCceEEEecC----CceEEEEEeeEEEECCEEecccCC--------CceeeE
Confidence 9999987543457999999999988 88999999996 367999999999999988653221 136999
Q ss_pred ccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEecCCC
Q 013672 315 DSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADSSMG 394 (438)
Q Consensus 315 DTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~ 394 (438)
||||+++++|++++++|++.++.... ...+|.++|+.. ..+|+|+|+|+|++++||+++|+.+. .
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~-----------~~~~~~~~C~~~-~~~p~l~~~f~g~~~~v~~~~y~~~~---~ 271 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD-----------QYGQYVVNCNNI-QNLPTLTFTINGVSFPLPPSAYILQN---N 271 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc-----------cCCCEEEeCCcc-ccCCcEEEEECCEEEEECHHHeEecC---C
Confidence 99999999999999999999866421 123577777753 36899999999999999999999863 3
Q ss_pred eEEE-EEEcC------C-CceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 395 LACL-AMGSS------S-GMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 395 ~~Cl-~~~~~------~-~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
..|+ ++++. + +.||||++|||++|++||++++|||||++
T Consensus 272 ~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 272 GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 4675 67542 1 46999999999999999999999999986
No 9
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-55 Score=428.75 Aligned_cols=294 Identities=27% Similarity=0.479 Sum_probs=245.8
Q ss_pred ccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEe
Q 013672 90 GEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYI 169 (438)
Q Consensus 90 ~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 169 (438)
+.|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|+|++|+|++.+.|.+..|.. ...|.+ +.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~-~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLN-NKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCC-CcCcEE
Confidence 58999999999999999999999999999999999998887889999999999999999999943 245644 469999
Q ss_pred eecCCCCeEEEEEEEEEEEECCcccc-------eeEEEeeEcCCCCCc-CCcceeeecCCCCCc--------chhh--cc
Q 013672 170 YSYGDTSSSQGVLATETLTFGDVSVP-------NIGFGCGSDNEGDGF-SQGAGLVGLGRGPLS--------LVSQ--LK 231 (438)
Q Consensus 170 ~~Y~dg~~~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~-~~~~GIlGLg~~~~s--------l~~q--l~ 231 (438)
+.|++|+.+.|.+++|+|++++..++ ++.|||+....+.+. ...+||||||+...+ +.+| +.
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~ 158 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKL 158 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccc
Confidence 99999988999999999999987653 478999987765433 367999999998643 1123 22
Q ss_pred --CCeeeEeecCCCCCcceEEEeCCCccCCCCCC----------CCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCC
Q 013672 232 --EPKFSYCLTSIDAAKTSTLLMGSLASANSSSS----------DQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDA 299 (438)
Q Consensus 232 --~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~----------g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 299 (438)
.++||+||.+ ..|.|+|||+|+.+ +. +++.|+|+.. ..+|.|.+++|+|+++......
T Consensus 159 ~~~~~FS~~l~~----~~G~l~~Gg~d~~~--~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~~ 228 (326)
T cd06096 159 KKDKIFSICLSE----DGGELTIGGYDKDY--TVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSGN 228 (326)
T ss_pred cCCceEEEEEcC----CCeEEEECccChhh--hcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccceec
Confidence 3899999986 35999999999887 55 7899999964 4799999999999987611100
Q ss_pred CCcccccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEc-CcE
Q 013672 300 SNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK-GAD 378 (438)
Q Consensus 300 ~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~-g~~ 378 (438)
.....++|||||++++||++++++|.+++ |+|+|.|+ |++
T Consensus 229 -------~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~ 269 (326)
T cd06096 229 -------TKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLK 269 (326)
T ss_pred -------ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcE
Confidence 12247999999999999999998876553 78999998 799
Q ss_pred EEeCCCCeEEEecCCCeEEEEEEcCCCceeecHhhhcceEEEEECCCCEEEEeeCCCC
Q 013672 379 VDLPPENYMIADSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIPTQCD 436 (438)
Q Consensus 379 ~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~ 436 (438)
++++|++|+++. ....+|+++....+.+|||++|||++|+|||++++|||||+++|-
T Consensus 270 ~~i~p~~y~~~~-~~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 270 IDWKPSSYLYKK-ESFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEECHHHhcccc-CCceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999999963 334567777666678999999999999999999999999999993
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.2e-55 Score=426.41 Aligned_cols=298 Identities=19% Similarity=0.368 Sum_probs=246.6
Q ss_pred cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCC--CCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCC
Q 013672 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVC--FDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANN 164 (438)
Q Consensus 87 ~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C--~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~ 164 (438)
..+..|+++|+||||+|+++|++||||+++||++..|..| .|..++.|+|++|+|++...
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~------------------ 65 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG------------------ 65 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC------------------
Confidence 3578999999999999999999999999999999989753 34456799999999999764
Q ss_pred cceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCC--cCCcceeeecCCCCCc----------chhh--c
Q 013672 165 ACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDG--FSQGAGLVGLGRGPLS----------LVSQ--L 230 (438)
Q Consensus 165 ~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~--~~~~~GIlGLg~~~~s----------l~~q--l 230 (438)
|.|.+.|++|+ +.|.+++|+|++++..+. +.||++....... ....+||||||++..+ |++| +
T Consensus 66 -~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i 142 (326)
T cd05487 66 -TEFTIHYASGT-VKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVL 142 (326)
T ss_pred -EEEEEEeCCce-EEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCC
Confidence 79999999997 999999999999998874 8899988754321 2368999999997654 5555 7
Q ss_pred cCCeeeEeecCCCC-CcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCC
Q 013672 231 KEPKFSYCLTSIDA-AKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGS 309 (438)
Q Consensus 231 ~~~~Fs~~l~~~~~-~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 309 (438)
.++.||+||.+... ...|.|+|||+|+.+ |.|+++|+|+. ...+|.|.+++++|+++.+.....
T Consensus 143 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~--y~g~l~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~~--------- 207 (326)
T cd05487 143 KEDVFSVYYSRDSSHSLGGEIVLGGSDPQH--YQGDFHYINTS----KTGFWQIQMKGVSVGSSTLLCEDG--------- 207 (326)
T ss_pred CCCEEEEEEeCCCCCCCCcEEEECCcChhh--ccCceEEEECC----cCceEEEEecEEEECCEEEecCCC---------
Confidence 78999999987532 357999999999998 89999999985 367999999999999987654321
Q ss_pred CcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEE
Q 013672 310 GGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIA 389 (438)
Q Consensus 310 ~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~ 389 (438)
..++|||||+++++|+++++++++++++.. . ..+|.++|+.. ..+|+|+|+|+|.+++|++++|+++
T Consensus 208 ~~aiiDSGts~~~lP~~~~~~l~~~~~~~~--------~----~~~y~~~C~~~-~~~P~i~f~fgg~~~~v~~~~yi~~ 274 (326)
T cd05487 208 CTAVVDTGASFISGPTSSISKLMEALGAKE--------R----LGDYVVKCNEV-PTLPDISFHLGGKEYTLSSSDYVLQ 274 (326)
T ss_pred CEEEECCCccchhCcHHHHHHHHHHhCCcc--------c----CCCEEEecccc-CCCCCEEEEECCEEEEeCHHHhEEe
Confidence 369999999999999999999999986541 1 22366777753 3689999999999999999999997
Q ss_pred ecC-CCeEEE-EEEcC------CCceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 390 DSS-MGLACL-AMGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 390 ~~~-~~~~Cl-~~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
... .+..|+ +++.. ++.||||++|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 432 245685 56532 257999999999999999999999999986
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.1e-55 Score=424.73 Aligned_cols=297 Identities=24% Similarity=0.471 Sum_probs=247.4
Q ss_pred cee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 013672 84 SVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNA 162 (438)
Q Consensus 84 p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~ 162 (438)
|+. ..+..|+++|.||||+|++.|+|||||+++||+|..|..+.|..++.|+|++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~---------------- 65 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG---------------- 65 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC----------------
Confidence 444 367899999999999999999999999999999999985444455799999999998764
Q ss_pred CCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcch----------hh-
Q 013672 163 NNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSLV----------SQ- 229 (438)
Q Consensus 163 ~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl~----------~q- 229 (438)
|.|.+.|++|+ ++|.+++|+|++++..++++.|+|++...+..+ ...+||||||++..+.. +|
T Consensus 66 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg 141 (320)
T cd05488 66 ---TEFKIQYGSGS-LEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQG 141 (320)
T ss_pred ---CEEEEEECCce-EEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcC
Confidence 78999999997 899999999999999999999999987765422 36799999999876532 22
Q ss_pred -ccCCeeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCC
Q 013672 230 -LKEPKFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDG 308 (438)
Q Consensus 230 -l~~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 308 (438)
+.++.||+||.+.. ...|.|+|||+|+++ +.++++|+|++. ..+|.|.+++|+||++.+..+.
T Consensus 142 ~i~~~~FS~~L~~~~-~~~G~l~fGg~d~~~--~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~--------- 205 (320)
T cd05488 142 LLDEPVFSFYLGSSE-EDGGEATFGGIDESR--FTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN--------- 205 (320)
T ss_pred CCCCCEEEEEecCCC-CCCcEEEECCcCHHH--cCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC---------
Confidence 56789999999753 357999999999988 899999999963 5799999999999998765432
Q ss_pred CCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEE
Q 013672 309 SGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMI 388 (438)
Q Consensus 309 ~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~ 388 (438)
..++|||||+++++|++++++|.+++++.. ....+|.++|+.. ..+|+|+|+|+|++++||+++|++
T Consensus 206 -~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----------~~~~~~~~~C~~~-~~~P~i~f~f~g~~~~i~~~~y~~ 272 (320)
T cd05488 206 -TGAAIDTGTSLIALPSDLAEMLNAEIGAKK-----------SWNGQYTVDCSKV-DSLPDLTFNFDGYNFTLGPFDYTL 272 (320)
T ss_pred -CeEEEcCCcccccCCHHHHHHHHHHhCCcc-----------ccCCcEEeecccc-ccCCCEEEEECCEEEEECHHHhee
Confidence 369999999999999999999998885431 1133466777643 378999999999999999999998
Q ss_pred EecCCCeEEEE-EEcC------CCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 389 ADSSMGLACLA-MGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 389 ~~~~~~~~Cl~-~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
+. ...|++ +... ++.||||++|||++|+|||++++|||||+
T Consensus 273 ~~---~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 273 EV---SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred cC---CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 52 246876 4431 24699999999999999999999999996
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.4e-54 Score=420.87 Aligned_cols=289 Identities=24% Similarity=0.454 Sum_probs=238.3
Q ss_pred cee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCC---CCCCCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 013672 84 SVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQ---VCFDQATPIFDPKESSSYSKIPCSSALCKALPQQE 159 (438)
Q Consensus 84 p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~---~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~ 159 (438)
|+. ..+..|+++|+||||+|++.|++||||+++||+|..|. .|. .++.|+|++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------- 66 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG------------- 66 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC-------------
Confidence 444 56899999999999999999999999999999999996 575 35799999999998764
Q ss_pred CCCCCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcc----------h
Q 013672 160 CNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSL----------V 227 (438)
Q Consensus 160 c~~~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl----------~ 227 (438)
..+.+.|++|+ +.|.+++|+|++++.+++++.||+++......+ ...+||||||++..+. .
T Consensus 67 ------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 67 ------TSASIQYGTGS-ISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred ------CEEEEEcCCce-EEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 68999999987 899999999999999999999999987654322 2679999999986653 3
Q ss_pred hh--ccCCeeeEeecCCCC-CcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCccc
Q 013672 228 SQ--LKEPKFSYCLTSIDA-AKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFAL 304 (438)
Q Consensus 228 ~q--l~~~~Fs~~l~~~~~-~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 304 (438)
+| +..+.||+||.+... ...|.|+|||+|+++ +.|+++|+|+.. ..+|.|.+++|+|+++.+......
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~--~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~--- 210 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKH--FKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGG--- 210 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhh--cccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCC---
Confidence 44 667899999986432 357999999999998 899999999963 579999999999999886543321
Q ss_pred ccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCC
Q 013672 305 QEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPE 384 (438)
Q Consensus 305 ~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~ 384 (438)
..+||||||+++++|+++++++. ...+|+.. .++|+|+|+|+|+.++|+++
T Consensus 211 -----~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~~------~~~P~i~f~f~g~~~~l~~~ 261 (317)
T cd06098 211 -----CAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNSL------SSMPNVSFTIGGKTFELTPE 261 (317)
T ss_pred -----cEEEEecCCcceeCCHHHHHhhh------------------ccCCcccc------ccCCcEEEEECCEEEEEChH
Confidence 36999999999999998775542 12345543 27899999999999999999
Q ss_pred CeEEEecC-CCeEEEE-EEcC------CCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 385 NYMIADSS-MGLACLA-MGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 385 ~y~~~~~~-~~~~Cl~-~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
+|+++... ....|++ ++.. ++.||||+.|||++|+|||++++|||||+
T Consensus 262 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 262 QYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99987432 2357975 5421 24699999999999999999999999996
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.9e-54 Score=430.47 Aligned_cols=302 Identities=19% Similarity=0.299 Sum_probs=246.6
Q ss_pred cccccee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCC
Q 013672 80 DLKSSVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQ 158 (438)
Q Consensus 80 ~~~~p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~ 158 (438)
...+|+. ..+.+|+++|+||||+|++.|++||||+++||+|..|..|.|+.++.|||++|+||+...
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------------
Confidence 4567775 678899999999999999999999999999999999997777777899999999998875
Q ss_pred CCCCCCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCC----cCCcceeeecCCCCCcc--------
Q 013672 159 ECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDG----FSQGAGLVGLGRGPLSL-------- 226 (438)
Q Consensus 159 ~c~~~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~----~~~~~GIlGLg~~~~sl-------- 226 (438)
+.|.+.|++|+ +.|.+++|+|++|+.+++ +.|+++....+.. ....+||||||++.++.
T Consensus 195 -------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~ 265 (453)
T PTZ00147 195 -------TKVEMNYVSGT-VSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVV 265 (453)
T ss_pred -------CEEEEEeCCCC-EEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHH
Confidence 78999999996 999999999999999888 5788877654421 12679999999987653
Q ss_pred --hhh--ccCCeeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCc
Q 013672 227 --VSQ--LKEPKFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNF 302 (438)
Q Consensus 227 --~~q--l~~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 302 (438)
.+| +.+++||+||.+.. ...|.|+|||+|+++ |.|++.|+|+. +..+|.|.++ +.+++... .
T Consensus 266 ~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~k--y~G~l~y~pl~----~~~~W~V~l~-~~vg~~~~--~---- 331 (453)
T PTZ00147 266 ELKNQNKIEQAVFTFYLPPED-KHKGYLTIGGIEERF--YEGPLTYEKLN----HDLYWQVDLD-VHFGNVSS--E---- 331 (453)
T ss_pred HHHHcCCCCccEEEEEecCCC-CCCeEEEECCcChhh--cCCceEEEEcC----CCceEEEEEE-EEECCEec--C----
Confidence 233 66789999998643 357999999999998 89999999995 3679999998 47765421 1
Q ss_pred ccccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeC
Q 013672 303 ALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLP 382 (438)
Q Consensus 303 ~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~ 382 (438)
...+||||||+++++|++++++++++++... .. . ...|..+|+. ..+|+|+|.|+|..++|+
T Consensus 332 ------~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~---~---~~~y~~~C~~--~~lP~~~f~f~g~~~~L~ 393 (453)
T PTZ00147 332 ------KANVIVDSGTSVITVPTEFLNKFVESLDVFK----VP---F---LPLYVTTCNN--TKLPTLEFRSPNKVYTLE 393 (453)
T ss_pred ------ceeEEECCCCchhcCCHHHHHHHHHHhCCee----cC---C---CCeEEEeCCC--CCCCeEEEEECCEEEEEC
Confidence 2469999999999999999999999985431 01 1 1224556664 278999999999999999
Q ss_pred CCCeEEEec-CCCeEEEE-EEcCC---CceeecHhhhcceEEEEECCCCEEEEeeCC
Q 013672 383 PENYMIADS-SMGLACLA-MGSSS---GMSIFGNVQQQNMLVLYDLAKETLSFIPTQ 434 (438)
Q Consensus 383 ~~~y~~~~~-~~~~~Cl~-~~~~~---~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~ 434 (438)
|++|+.+.. .....|++ +++.. +.||||++|||++|+|||++++|||||+++
T Consensus 394 p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 394 PEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999997522 23357964 76532 579999999999999999999999999987
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.2e-54 Score=420.36 Aligned_cols=298 Identities=23% Similarity=0.415 Sum_probs=246.0
Q ss_pred cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCC--CCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCC
Q 013672 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVC--FDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANN 164 (438)
Q Consensus 87 ~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C--~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~ 164 (438)
..+..|+++|+||||+|++.|++||||+++||+|..|..| .+..++.|+|++|+|++...
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------------ 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------------ 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC------------------
Confidence 5789999999999999999999999999999999999732 12345789999999999865
Q ss_pred cceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcc----------hhh--c
Q 013672 165 ACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSL----------VSQ--L 230 (438)
Q Consensus 165 ~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl----------~~q--l 230 (438)
|.|.+.|++|+ +.|.+++|+|++++..++++.||++....+..+ ...+||||||++..+. .+| +
T Consensus 69 -~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i 146 (329)
T cd05485 69 -TEFAIQYGSGS-LSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLV 146 (329)
T ss_pred -eEEEEEECCce-EEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCC
Confidence 79999999997 899999999999999999999999987654322 2679999999987653 333 5
Q ss_pred cCCeeeEeecCCCCC-cceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCC
Q 013672 231 KEPKFSYCLTSIDAA-KTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGS 309 (438)
Q Consensus 231 ~~~~Fs~~l~~~~~~-~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 309 (438)
.++.||+||.+.... ..|.|+|||+|+.+ +.|++.|+|+. ...+|.|.+++++++++.+... .
T Consensus 147 ~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~--~~g~l~~~p~~----~~~~~~v~~~~i~v~~~~~~~~----------~ 210 (329)
T cd05485 147 DAPVFSFYLNRDPSAKEGGELILGGSDPKH--YTGNFTYLPVT----RKGYWQFKMDSVSVGEGEFCSG----------G 210 (329)
T ss_pred CCCEEEEEecCCCCCCCCcEEEEcccCHHH--cccceEEEEcC----CceEEEEEeeEEEECCeeecCC----------C
Confidence 568999999864322 46999999999988 88999999995 3679999999999998765311 1
Q ss_pred CcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEE
Q 013672 310 GGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIA 389 (438)
Q Consensus 310 ~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~ 389 (438)
..+||||||+++++|++++++|.+++++.. . ...||.++|+.. .++|+|+|+|+|+.++|++++|+++
T Consensus 211 ~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~--------~---~~~~~~~~C~~~-~~~p~i~f~fgg~~~~i~~~~yi~~ 278 (329)
T cd05485 211 CQAIADTGTSLIAGPVDEIEKLNNAIGAKP--------I---IGGEYMVNCSAI-PSLPDITFVLGGKSFSLTGKDYVLK 278 (329)
T ss_pred cEEEEccCCcceeCCHHHHHHHHHHhCCcc--------c---cCCcEEEecccc-ccCCcEEEEECCEEeEEChHHeEEE
Confidence 369999999999999999999999886531 1 123577777753 3689999999999999999999997
Q ss_pred ecCC-CeEEEE-EEcC------CCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 390 DSSM-GLACLA-MGSS------SGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 390 ~~~~-~~~Cl~-~~~~------~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.... ...|+. ++.. .+.||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 279 VTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 4332 357875 5532 24799999999999999999999999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.2e-53 Score=422.98 Aligned_cols=302 Identities=21% Similarity=0.340 Sum_probs=243.3
Q ss_pred cccccee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCC
Q 013672 80 DLKSSVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQ 158 (438)
Q Consensus 80 ~~~~p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~ 158 (438)
...+|+. ..+.+|+++|+||||+|++.|++||||+++||+|..|..+.|+.++.|||++|+|++..+
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC------------
Confidence 4556775 678899999999999999999999999999999999986555566899999999998865
Q ss_pred CCCCCCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCC--Cc--CCcceeeecCCCCCcc--------
Q 013672 159 ECNANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGD--GF--SQGAGLVGLGRGPLSL-------- 226 (438)
Q Consensus 159 ~c~~~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~--~~~~GIlGLg~~~~sl-------- 226 (438)
+.+.+.|++|+ +.|.+++|+|++|+.+++ +.|+++...... .+ ...+||||||++.++.
T Consensus 194 -------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~ 264 (450)
T PTZ00013 194 -------TKVDITYGSGT-VKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVV 264 (450)
T ss_pred -------cEEEEEECCce-EEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHH
Confidence 78999999997 999999999999999887 578887654321 11 2679999999987652
Q ss_pred --hhh--ccCCeeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCc
Q 013672 227 --VSQ--LKEPKFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNF 302 (438)
Q Consensus 227 --~~q--l~~~~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 302 (438)
.+| +.+++||+||.+.+ ...|.|+|||+|+++ |.|++.|+|+. ...+|.|.++ +.++.... .
T Consensus 265 ~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~~--y~G~L~y~pv~----~~~yW~I~l~-v~~G~~~~--~---- 330 (450)
T PTZ00013 265 ELKNQNKIDNALFTFYLPVHD-VHAGYLTIGGIEEKF--YEGNITYEKLN----HDLYWQIDLD-VHFGKQTM--Q---- 330 (450)
T ss_pred HHHhccCcCCcEEEEEecCCC-CCCCEEEECCcCccc--cccceEEEEcC----cCceEEEEEE-EEECceec--c----
Confidence 233 56789999998643 357999999999998 89999999995 3679999998 66654332 1
Q ss_pred ccccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeC
Q 013672 303 ALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLP 382 (438)
Q Consensus 303 ~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~ 382 (438)
...+||||||+++++|+++++++.++++... .. ....|..+|+. ..+|+|+|+|+|.+++|+
T Consensus 331 ------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~------~~~~y~~~C~~--~~lP~i~F~~~g~~~~L~ 392 (450)
T PTZ00013 331 ------KANVIVDSGTTTITAPSEFLNKFFANLNVIK----VP------FLPFYVTTCDN--KEMPTLEFKSANNTYTLE 392 (450)
T ss_pred ------ccceEECCCCccccCCHHHHHHHHHHhCCee----cC------CCCeEEeecCC--CCCCeEEEEECCEEEEEC
Confidence 1369999999999999999999999885431 01 11235566764 278999999999999999
Q ss_pred CCCeEEEe-cCCCeEEE-EEEcCC---CceeecHhhhcceEEEEECCCCEEEEeeCC
Q 013672 383 PENYMIAD-SSMGLACL-AMGSSS---GMSIFGNVQQQNMLVLYDLAKETLSFIPTQ 434 (438)
Q Consensus 383 ~~~y~~~~-~~~~~~Cl-~~~~~~---~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~ 434 (438)
|++|+.+. ..++..|+ ++++.. +.||||++|||++|+|||++++|||||+++
T Consensus 393 p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 393 PEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99998752 22346796 465532 579999999999999999999999999975
No 16
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-52 Score=400.09 Aligned_cols=263 Identities=27% Similarity=0.435 Sum_probs=224.3
Q ss_pred EEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEeee
Q 013672 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIYS 171 (438)
Q Consensus 92 Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~ 171 (438)
|+++|+||||+|++.|++||||+++||+|..|..|.++.++.|+|++|+|++..+ .|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP------------------GATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC------------------CcEEEEE
Confidence 8999999999999999999999999999999999988888899999999998754 2789999
Q ss_pred cCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeecCCCCCcc-------------hhhccCCeee
Q 013672 172 YGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGLGRGPLSL-------------VSQLKEPKFS 236 (438)
Q Consensus 172 Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGLg~~~~sl-------------~~ql~~~~Fs 236 (438)
|++|+.+.|.+++|+|++++.+++++.||+++...+..+ ...+||||||++..+. .+|+.++.||
T Consensus 63 Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs 142 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFT 142 (278)
T ss_pred eCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEE
Confidence 999988999999999999999999999999998765222 3789999999986543 2233358999
Q ss_pred EeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEcc
Q 013672 237 YCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDS 316 (438)
Q Consensus 237 ~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 316 (438)
+||.+ ...|+|+|||+|+.+ +.|++.|+|+.. ...+|.|++++|+|+++...... ...++|||
T Consensus 143 ~~l~~---~~~G~l~fGg~D~~~--~~g~l~~~pi~~---~~~~w~v~l~~i~v~~~~~~~~~---------~~~~iiDS 205 (278)
T cd06097 143 ADLRK---AAPGFYTFGYIDESK--YKGEISWTPVDN---SSGFWQFTSTSYTVGGDAPWSRS---------GFSAIADT 205 (278)
T ss_pred EEecC---CCCcEEEEeccChHH--cCCceEEEEccC---CCcEEEEEEeeEEECCcceeecC---------CceEEeec
Confidence 99986 357999999999998 899999999975 25799999999999987432221 24699999
Q ss_pred ccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEecCCCeE
Q 013672 317 GTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADSSMGLA 396 (438)
Q Consensus 317 Gt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~ 396 (438)
||+++++|++++++|.+++.+.. ......+|.++|+. .+|+|+|+|
T Consensus 206 GTs~~~lP~~~~~~l~~~l~g~~---------~~~~~~~~~~~C~~---~~P~i~f~~---------------------- 251 (278)
T cd06097 206 GTTLILLPDAIVEAYYSQVPGAY---------YDSEYGGWVFPCDT---TLPDLSFAV---------------------- 251 (278)
T ss_pred CCchhcCCHHHHHHHHHhCcCCc---------ccCCCCEEEEECCC---CCCCEEEEE----------------------
Confidence 99999999999999999984321 11123468899986 489999999
Q ss_pred EEEEEcCCCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 397 CLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 397 Cl~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.||||++|||++|+|||++++|||||+
T Consensus 252 ---------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 689999999999999999999999996
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.5e-52 Score=406.42 Aligned_cols=318 Identities=25% Similarity=0.423 Sum_probs=253.9
Q ss_pred eCCCCce-eeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCC------------CCCCCC
Q 013672 98 IGSPAVS-FSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQ------------ECNANN 164 (438)
Q Consensus 98 iGtP~q~-~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~------------~c~~~~ 164 (438)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|...... .|.. +
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-N 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-C
Confidence 5888777 999999999999999864 4688999999999999865432 4533 3
Q ss_pred cceEeee-cCCCCeEEEEEEEEEEEECC--------cccceeEEEeeEcCCCC-CcCCcceeeecCCCCCcchhhccC--
Q 013672 165 ACEYIYS-YGDTSSSQGVLATETLTFGD--------VSVPNIGFGCGSDNEGD-GFSQGAGLVGLGRGPLSLVSQLKE-- 232 (438)
Q Consensus 165 ~~~~~~~-Y~dg~~~~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~-~~~~~~GIlGLg~~~~sl~~ql~~-- 232 (438)
.|.|... |++|+...|++++|+|+++. .+++++.|||+...... .....+||||||++++|+++|+..
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 5888665 77898899999999999974 26889999999875422 133589999999999999999653
Q ss_pred ---CeeeEeecCCCCCcceEEEeCCCccCCC----CCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccc
Q 013672 233 ---PKFSYCLTSIDAAKTSTLLMGSLASANS----SSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQ 305 (438)
Q Consensus 233 ---~~Fs~~l~~~~~~~~g~l~fGg~d~~~~----~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 305 (438)
++|||||.+.. ...|.|+||+.+..+. ...++++|+|++.++..+.+|+|+|++|+||++++.++...+...
T Consensus 147 ~~~~~FS~CL~~~~-~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 147 GVARKFALCLPSSP-GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred CCCcceEEEeCCCC-CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 78999998743 3579999999987651 024789999999766456799999999999999988776655555
Q ss_pred cCCCCcEEEccccccccccHHHHHHHHHHHHHhccC-cccccCCCCCccceeecCCC---CCccccceEEEEEcC--cEE
Q 013672 306 EDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKL-SVTDAADQTGLDVCFKLPSG---STDVEVPKLVFHFKG--ADV 379 (438)
Q Consensus 306 ~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~---~~~~~~P~i~f~f~g--~~~ 379 (438)
..+.+++||||||++++||+++|++|.+++..+++. .... ......+.||..... .....+|+|+|+|+| +++
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVP-AAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCC-CCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 556678999999999999999999999999987642 2211 111123689985421 112489999999986 999
Q ss_pred EeCCCCeEEEecCCCeEEEEEEcCC----CceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 380 DLPPENYMIADSSMGLACLAMGSSS----GMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 380 ~l~~~~y~~~~~~~~~~Cl~~~~~~----~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
+|++++|+++. .++..|+++++.+ ..||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~ny~~~~-~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQV-KGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEc-CCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999974 4567899998654 46899999999999999999999999973
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.9e-52 Score=411.43 Aligned_cols=312 Identities=20% Similarity=0.322 Sum_probs=238.2
Q ss_pred ccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEe
Q 013672 90 GEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYI 169 (438)
Q Consensus 90 ~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 169 (438)
..|+++|.||||+|++.|+|||||+++||+|..|.. .++.|+|++|+|++..+ |.|.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~-------------------~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLG-------------------KGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCC-------------------ceEE
Confidence 579999999999999999999999999999987732 35689999999999876 7999
Q ss_pred eecCCCCeEEEEEEEEEEEECCcccc--eeEEEeeEcCCCCCcC--CcceeeecCCCCC------------cchhhc-cC
Q 013672 170 YSYGDTSSSQGVLATETLTFGDVSVP--NIGFGCGSDNEGDGFS--QGAGLVGLGRGPL------------SLVSQL-KE 232 (438)
Q Consensus 170 ~~Y~dg~~~~G~~~~D~v~ig~~~~~--~~~fg~~~~~~~~~~~--~~~GIlGLg~~~~------------sl~~ql-~~ 232 (438)
+.|++|+ +.|.+++|+|++++.... .+.|+++......+.. ..+||||||++.+ ++++|. ..
T Consensus 59 i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 59 VPYTQGS-WEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred EEECcce-EEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 9999996 799999999999864211 1234555544433222 5799999999876 345553 23
Q ss_pred CeeeEeecCC--------CCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCccc
Q 013672 233 PKFSYCLTSI--------DAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFAL 304 (438)
Q Consensus 233 ~~Fs~~l~~~--------~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 304 (438)
++||+||... .....|.|+|||+|+.+ +.|++.|+|++. ..+|.|.+++|+|+++.+..+...+.
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~--~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~~~~- 210 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSL--YKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCKEYN- 210 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhh--cCCCceEEecCc----ceeEEEEEEEEEECCEeccccccccc-
Confidence 6899988531 11247999999999988 899999999963 57899999999999998765433221
Q ss_pred ccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccccCC--CCCccceeecCCCCCccccceEEEEEcC------
Q 013672 305 QEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAAD--QTGLDVCFKLPSGSTDVEVPKLVFHFKG------ 376 (438)
Q Consensus 305 ~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~P~i~f~f~g------ 376 (438)
...+||||||+++++|++++++|+++++++...+... .. .....+|+...... ...+|+|+|+|+|
T Consensus 211 ----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~C~~~~~~~-~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 211 ----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFP-DGFWLGSQLACWQKGTTP-WEIFPKISIYLRDENSSQS 284 (364)
T ss_pred ----CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCC-ccccCcceeecccccCch-HhhCCcEEEEEccCCCCce
Confidence 1359999999999999999999999998874322111 11 11124566543211 1268999999975
Q ss_pred cEEEeCCCCeEEEecC--CCeEEEE--EEcCCCceeecHhhhcceEEEEECCCCEEEEeeCCCCCC
Q 013672 377 ADVDLPPENYMIADSS--MGLACLA--MGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIPTQCDKL 438 (438)
Q Consensus 377 ~~~~l~~~~y~~~~~~--~~~~Cl~--~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~~~ 438 (438)
.+++|+|++|+..... .+..|++ +.+..+.||||+.|||++|+|||++++|||||+++|.++
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 3789999999985321 2467975 334446799999999999999999999999999999863
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-51 Score=388.59 Aligned_cols=257 Identities=61% Similarity=1.076 Sum_probs=222.2
Q ss_pred cEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEee
Q 013672 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIY 170 (438)
Q Consensus 91 ~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 170 (438)
+|+++|+||||+|++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999985 25889
Q ss_pred ecCCCCeEEEEEEEEEEEECCc--ccceeEEEeeEcCCCCCcCCcceeeecCCCCCcchhhccCC--eeeEeecCCC-CC
Q 013672 171 SYGDTSSSQGVLATETLTFGDV--SVPNIGFGCGSDNEGDGFSQGAGLVGLGRGPLSLVSQLKEP--KFSYCLTSID-AA 245 (438)
Q Consensus 171 ~Y~dg~~~~G~~~~D~v~ig~~--~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql~~~--~Fs~~l~~~~-~~ 245 (438)
.|+||+.++|.+++|+|++++. .++++.|||++...+......+||||||+...++++|+... +||+||.+.. ..
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~~ 115 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTG 115 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCCC
Confidence 9999989999999999999998 89999999999876532347899999999999999998765 9999998743 34
Q ss_pred cceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccH
Q 013672 246 KTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLID 325 (438)
Q Consensus 246 ~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~ 325 (438)
..|+|+|||+|++ +.+++.|+|++.++....+|.|++++|+|+++.+.++...+.........+||||||++++||+
T Consensus 116 ~~G~l~fGg~d~~---~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 116 GSSPLILGDAADL---GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred CCCeEEECCcccc---cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 6799999999987 5799999999876544679999999999999988754433322223346799999999999997
Q ss_pred HHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEc-CcEEEeCCCCeEEEecCCCeEEEEEEcC-
Q 013672 326 SAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFK-GADVDLPPENYMIADSSMGLACLAMGSS- 403 (438)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~- 403 (438)
+++ |+|+|+|+ |.++.+++++|+++ ...+..|++++..
T Consensus 193 ~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~-~~~~~~C~~~~~~~ 232 (265)
T cd05476 193 PAY---------------------------------------PDLTLHFDGGADLELPPENYFVD-VGEGVVCLAILSSS 232 (265)
T ss_pred ccc---------------------------------------CCEEEEECCCCEEEeCcccEEEE-CCCCCEEEEEecCC
Confidence 765 67999999 79999999999996 4567899998766
Q ss_pred -CCceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 013672 404 -SGMSIFGNVQQQNMLVLYDLAKETLSFIPTQC 435 (438)
Q Consensus 404 -~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 435 (438)
.+.||||++|||++|++||.+++|||||+++|
T Consensus 233 ~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 233 SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 47899999999999999999999999999999
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=7.9e-50 Score=379.51 Aligned_cols=251 Identities=33% Similarity=0.645 Sum_probs=210.1
Q ss_pred ccEEEEEEeCCCCceeeEEEecCCCcceEeC-CCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceE
Q 013672 90 GEYLMDLSIGSPAVSFSAILDTGSDLIWTQC-KPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEY 168 (438)
Q Consensus 90 ~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~-~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 168 (438)
++|+++|.||||+|++.|++||||+++||+| .+|..| . |.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~-------------------c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q-------------------CDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c-------------------Ccc
Confidence 4799999999999999999999999999998 467666 1 689
Q ss_pred eeecCCCCeEEEEEEEEEEEECC----cccceeEEEeeEcCCCCCc---CCcceeeecCCCCCcchhhcc-----CCeee
Q 013672 169 IYSYGDTSSSQGVLATETLTFGD----VSVPNIGFGCGSDNEGDGF---SQGAGLVGLGRGPLSLVSQLK-----EPKFS 236 (438)
Q Consensus 169 ~~~Y~dg~~~~G~~~~D~v~ig~----~~~~~~~fg~~~~~~~~~~---~~~~GIlGLg~~~~sl~~ql~-----~~~Fs 236 (438)
.+.|+|++.++|.+++|+|+++. ..++++.|||+....+... ...+||||||+.+.++++|+. +++||
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 99999888899999999999964 4778999999987654321 267999999999999988854 37899
Q ss_pred EeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEcc
Q 013672 237 YCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDS 316 (438)
Q Consensus 237 ~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT 316 (438)
+||.+ ...|.|+||+ ..+ +.+++.|+|+..++ ...+|.|++++|+||++.... +...+||||
T Consensus 123 ~~l~~---~~~g~l~~G~--~~~--~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDT 184 (273)
T cd05475 123 HCLSS---NGGGFLFFGD--DLV--PSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTGG----------KGLEVVFDS 184 (273)
T ss_pred EEccC---CCCeEEEECC--CCC--CCCCeeecccccCC-CCCeEEEeEeEEEECCEECcC----------CCceEEEEC
Confidence 99986 3468999984 334 56899999998654 357999999999999885321 124699999
Q ss_pred ccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcC----cEEEeCCCCeEEEecC
Q 013672 317 GTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKG----ADVDLPPENYMIADSS 392 (438)
Q Consensus 317 Gt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g----~~~~l~~~~y~~~~~~ 392 (438)
||+++++|+++| +|+|+|+|++ ++++||+++|++. ..
T Consensus 185 GTt~t~lp~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~-~~ 225 (273)
T cd05475 185 GSSYTYFNAQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLII-SE 225 (273)
T ss_pred CCceEEcCCccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEE-cC
Confidence 999999998754 3789999987 6999999999987 34
Q ss_pred CCeEEEEEEcCC-----CceeecHhhhcceEEEEECCCCEEEEeeCCC
Q 013672 393 MGLACLAMGSSS-----GMSIFGNVQQQNMLVLYDLAKETLSFIPTQC 435 (438)
Q Consensus 393 ~~~~Cl~~~~~~-----~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 435 (438)
.+..|++++... +.||||+.|||++|++||++++|||||+++|
T Consensus 226 ~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 226 KGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 567899977432 4699999999999999999999999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.9e-50 Score=388.32 Aligned_cols=294 Identities=28% Similarity=0.553 Sum_probs=246.2
Q ss_pred cEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCC-CCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEe
Q 013672 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVC-FDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYI 169 (438)
Q Consensus 91 ~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C-~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 169 (438)
+|+++|.||||+|+++|++||||+++||++..|..| .+.....|++++|+|++... +.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~-------------------~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG-------------------KPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-------------------EEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-------------------eeee
Confidence 599999999999999999999999999999999877 55567899999999999875 7899
Q ss_pred eecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCC--cCCcceeeecCCCCC-------cchhh------ccCCe
Q 013672 170 YSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDG--FSQGAGLVGLGRGPL-------SLVSQ------LKEPK 234 (438)
Q Consensus 170 ~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~--~~~~~GIlGLg~~~~-------sl~~q------l~~~~ 234 (438)
+.|++|. ++|.++.|+|++++..++++.||++....+.. ....+||||||++.. +++.+ +.+++
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~ 140 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNV 140 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSE
T ss_pred eeccCcc-cccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccc
Confidence 9999998 99999999999999999999999999864321 237899999997543 23333 66799
Q ss_pred eeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEE
Q 013672 235 FSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLII 314 (438)
Q Consensus 235 Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 314 (438)
||++|.+.. ...|.|+|||+|+++ +.|+++|+|+. ...+|.|.+++|.+++........ ..++|
T Consensus 141 fsl~l~~~~-~~~g~l~~Gg~d~~~--~~g~~~~~~~~----~~~~w~v~~~~i~i~~~~~~~~~~---------~~~~~ 204 (317)
T PF00026_consen 141 FSLYLNPSD-SQNGSLTFGGYDPSK--YDGDLVWVPLV----SSGYWSVPLDSISIGGESVFSSSG---------QQAIL 204 (317)
T ss_dssp EEEEEESTT-SSEEEEEESSEEGGG--EESEEEEEEBS----STTTTEEEEEEEEETTEEEEEEEE---------EEEEE
T ss_pred cceeeeecc-cccchheeecccccc--ccCceeccCcc----cccccccccccccccccccccccc---------eeeec
Confidence 999999855 567999999999998 88999999997 477999999999999883222211 25999
Q ss_pred ccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEecCC-
Q 013672 315 DSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADSSM- 393 (438)
Q Consensus 315 DTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~- 393 (438)
|||++++++|++++++|++.+++... . .+|.++|+.. ..+|.|+|+|++.+++||+++|+.+....
T Consensus 205 Dtgt~~i~lp~~~~~~i~~~l~~~~~--------~----~~~~~~c~~~-~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 205 DTGTSYIYLPRSIFDAIIKALGGSYS--------D----GVYSVPCNST-DSLPDLTFTFGGVTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp ETTBSSEEEEHHHHHHHHHHHTTEEE--------C----SEEEEETTGG-GGSEEEEEEETTEEEEEEHHHHEEEESSTT
T ss_pred ccccccccccchhhHHHHhhhccccc--------c----eeEEEecccc-cccceEEEeeCCEEEEecchHhcccccccc
Confidence 99999999999999999999977621 1 5688888863 46899999999999999999999984433
Q ss_pred CeEEEE-EEc-----CCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 394 GLACLA-MGS-----SSGMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 394 ~~~Cl~-~~~-----~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
...|.. +.+ ..+.+|||.+|||++|++||.+++|||||+|
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 247855 655 2267999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.2e-48 Score=374.43 Aligned_cols=270 Identities=27% Similarity=0.489 Sum_probs=224.6
Q ss_pred cEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEee
Q 013672 91 EYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIY 170 (438)
Q Consensus 91 ~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 170 (438)
.|+++|.||||+|++.|++||||+++||+ .|.+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999997 2678
Q ss_pred ecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcCCcceeeecCCCCC-----------cchhh------ccCC
Q 013672 171 SYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGAGLVGLGRGPL-----------SLVSQ------LKEP 233 (438)
Q Consensus 171 ~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~-----------sl~~q------l~~~ 233 (438)
.|++|+.+.|.+++|+|++++..++++.|||++... ..+||||||+... ++++| +.++
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~ 109 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS-----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKN 109 (295)
T ss_pred EeccCCcEEEEEEEEEEEECCeEecceEEEEEecCC-----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccce
Confidence 899988899999999999999999999999999843 4699999999876 35554 4568
Q ss_pred eeeEeecCCCCCcceEEEeCCCccCCCCCCCCeeeecCccCCC--CCcceEEeeeeEEEcCeeeecCCCCcccccCCCCc
Q 013672 234 KFSYCLTSIDAAKTSTLLMGSLASANSSSSDQILTTPLIKSPL--QASFYYLPLEGISVGGTRLPIDASNFALQEDGSGG 311 (438)
Q Consensus 234 ~Fs~~l~~~~~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 311 (438)
.||+||.+.. ...|.|+|||+|+.+ +.+++.|+|+..++. ...+|.|.+++|++++.++..+. ......
T Consensus 110 ~Fsl~l~~~~-~~~g~l~~Gg~d~~~--~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~------~~~~~~ 180 (295)
T cd05474 110 AYSLYLNDLD-ASTGSILFGGVDTAK--YSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL------LSKNLP 180 (295)
T ss_pred EEEEEeCCCC-CCceeEEEeeeccce--eeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc------cCCCcc
Confidence 9999998743 357999999999988 889999999986532 23789999999999998764311 122357
Q ss_pred EEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEec
Q 013672 312 LIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADS 391 (438)
Q Consensus 312 ~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~ 391 (438)
++|||||++++||++++++|++++++.... ...++..+|.... . |+|+|+|+|.+++||+++|+++..
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----------~~~~~~~~C~~~~-~-p~i~f~f~g~~~~i~~~~~~~~~~ 248 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDS----------DEGLYVVDCDAKD-D-GSLTFNFGGATISVPLSDLVLPAS 248 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcC----------CCcEEEEeCCCCC-C-CEEEEEECCeEEEEEHHHhEeccc
Confidence 999999999999999999999999775321 1234666776542 3 999999999999999999999743
Q ss_pred C---CCeEE-EEEEcCC-CceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 392 S---MGLAC-LAMGSSS-GMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 392 ~---~~~~C-l~~~~~~-~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
. .+..| +++++.. +.||||++|||++|++||.+++|||||++
T Consensus 249 ~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 249 TDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 2 34566 5788766 78999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2e-45 Score=351.53 Aligned_cols=267 Identities=33% Similarity=0.644 Sum_probs=223.4
Q ss_pred EEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCC--CCCCCCCccccccCCCcccCCCCCCCCCCCCcceEe
Q 013672 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPI--FDPKESSSYSKIPCSSALCKALPQQECNANNACEYI 169 (438)
Q Consensus 92 Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~--f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 169 (438)
|+++|.||||+|++.|++||||+++||+|..|..|.++.... |++..|+++.... |.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~-------------------~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG-------------------CTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC-------------------CEEE
Confidence 789999999999999999999999999999999887765555 7888888776653 7999
Q ss_pred eecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCC-cCCcceeeecCCCC------Ccchhh------ccCCeee
Q 013672 170 YSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDG-FSQGAGLVGLGRGP------LSLVSQ------LKEPKFS 236 (438)
Q Consensus 170 ~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~-~~~~~GIlGLg~~~------~sl~~q------l~~~~Fs 236 (438)
+.|++|. +.|.+++|+|++++..++++.|||++...... ....+||||||+.. .++++| +.+++||
T Consensus 62 ~~Y~~g~-~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs 140 (283)
T cd05471 62 ITYGDGS-VTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFS 140 (283)
T ss_pred EEECCCe-EEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEE
Confidence 9999875 99999999999999999999999999887532 23789999999988 566666 3459999
Q ss_pred EeecCCC-CCcceEEEeCCCccCCCCCCCCeeeecCccCCCCCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEc
Q 013672 237 YCLTSID-AAKTSTLLMGSLASANSSSSDQILTTPLIKSPLQASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIID 315 (438)
Q Consensus 237 ~~l~~~~-~~~~g~l~fGg~d~~~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 315 (438)
+||.+.. ....|.|+|||+|+.+ +.+++.|+|++.. ...+|.|.+++|.|++...... .....++||
T Consensus 141 ~~l~~~~~~~~~g~l~~Gg~d~~~--~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiD 208 (283)
T cd05471 141 FYLGRDGDGGNGGELTFGGIDPSK--YTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISS--------SGGGGAIVD 208 (283)
T ss_pred EEEcCCCCCCCCCEEEEcccCccc--cCCceEEEecCCC--CCCEEEEEeCeEEECCceeeec--------CCCcEEEEe
Confidence 9999842 2367999999999988 7899999999863 2679999999999998741111 122479999
Q ss_pred cccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEecCCCe
Q 013672 316 SGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIADSSMGL 395 (438)
Q Consensus 316 TGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~ 395 (438)
|||++++||++++++|++++...... ...|+..+|... ..+|+|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~-~~~p~i~f~f--------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSPC-DTLPDITFTF--------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCccc-CcCCCEEEEE---------------------
Confidence 99999999999999999999776321 234555555543 4899999999
Q ss_pred EEEEEEcCCCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 396 ACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 396 ~Cl~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.+|||++|||++|++||.++++||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 679999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=8.3e-30 Score=222.67 Aligned_cols=153 Identities=52% Similarity=0.956 Sum_probs=126.1
Q ss_pred EEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCC--C-CCCCCcceE
Q 013672 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQ--E-CNANNACEY 168 (438)
Q Consensus 92 Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~--~-c~~~~~~~~ 168 (438)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...+.. . |..++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 35799999999999999999999988753 3 333568999
Q ss_pred eeecCCCCeEEEEEEEEEEEECCc-----ccceeEEEeeEcCCCCCcCCcceeeecCCCCCcchhhc---cCCeeeEeec
Q 013672 169 IYSYGDTSSSQGVLATETLTFGDV-----SVPNIGFGCGSDNEGDGFSQGAGLVGLGRGPLSLVSQL---KEPKFSYCLT 240 (438)
Q Consensus 169 ~~~Y~dg~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~GIlGLg~~~~sl~~ql---~~~~Fs~~l~ 240 (438)
.+.|.++..+.|.+++|+|+++.. .+.++.|||++...+. ....+||||||+.++|+++|+ ..++|||||.
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~ 150 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-FYGADGILGLGRGPLSLPSQLASSSGNKFSYCLP 150 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-STTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-CcCCCcccccCCCcccHHHHHHHhcCCeEEEECC
Confidence 999999999999999999999864 5789999999998865 338899999999999999999 7899999999
Q ss_pred CCCCCcceEEEeCC
Q 013672 241 SIDAAKTSTLLMGS 254 (438)
Q Consensus 241 ~~~~~~~g~l~fGg 254 (438)
+......|.|+||+
T Consensus 151 ~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 151 SSSPSSSGFLSFGD 164 (164)
T ss_dssp S-SSSSEEEEEECS
T ss_pred CCCCCCCEEEEeCc
Confidence 84445889999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=1.7e-25 Score=195.29 Aligned_cols=151 Identities=47% Similarity=0.813 Sum_probs=120.2
Q ss_pred ceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHHHHHHHHHHHhccCcccc--cCCCCCccceee
Q 013672 280 FYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTD--AADQTGLDVCFK 357 (438)
Q Consensus 280 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~C~~ 357 (438)
+|+|++.+|+||++++.++...|+. .++.++++|||||++++||+++|+.+.+++...+...... ......+..||.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999998877 7778899999999999999999999999999988543211 034567889999
Q ss_pred cCC---CCCccccceEEEEEc-CcEEEeCCCCeEEEecCCCeEEEEEEcC----CCceeecHhhhcceEEEEECCCCEEE
Q 013672 358 LPS---GSTDVEVPKLVFHFK-GADVDLPPENYMIADSSMGLACLAMGSS----SGMSIFGNVQQQNMLVLYDLAKETLS 429 (438)
Q Consensus 358 ~~~---~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~----~~~~ilG~~fl~~~y~vfD~~~~~iG 429 (438)
.+. ......+|+|+|+|. |++++|++++|++.. .++..|+++.++ .+..|||+.+|+++.++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~-~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQV-SPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEE-CTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeec-cCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 987 233468999999999 699999999999984 467999999877 36889999999999999999999999
Q ss_pred Eee
Q 013672 430 FIP 432 (438)
Q Consensus 430 fa~ 432 (438)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=6.6e-24 Score=173.06 Aligned_cols=106 Identities=36% Similarity=0.720 Sum_probs=94.8
Q ss_pred EEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCC-CCCCCCccccccCCCcccCCCCCCCCCCCCcceEeeec
Q 013672 94 MDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIF-DPKESSSYSKIPCSSALCKALPQQECNANNACEYIYSY 172 (438)
Q Consensus 94 ~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f-~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~Y 172 (438)
++|.||||+|++.|+|||||+++||+|..|..|.++..+.| +|+.|++++... |.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~-------------------~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG-------------------CTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC-------------------cEEEEEe
Confidence 47999999999999999999999999999998877766777 999999998765 7999999
Q ss_pred CCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCc--CCcceeeec
Q 013672 173 GDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGF--SQGAGLVGL 219 (438)
Q Consensus 173 ~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~--~~~~GIlGL 219 (438)
++|+ +.|.++.|+|++++..++++.|||++...+..+ ...+|||||
T Consensus 62 ~~g~-~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGS-LSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCe-EEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 9986 889999999999999999999999998876432 368999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.31 E-value=1.9e-06 Score=67.78 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=68.5
Q ss_pred ccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEe
Q 013672 90 GEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYI 169 (438)
Q Consensus 90 ~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 169 (438)
+.|++++.|+ ++++.+++|||++.+|+.......+.. .. .. .....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~----------~~------------------~~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PL----------TL------------------GGKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----Cc----------cC------------------CCcEE
Confidence 3689999999 799999999999999997642211110 00 00 13456
Q ss_pred eecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcCCcceeeecCC
Q 013672 170 YSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGAGLVGLGR 221 (438)
Q Consensus 170 ~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 221 (438)
+...+|.........+.+++|+..++++.+..+..... ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCcEEeccEEEEeCCccc----CCceEeChHH
Confidence 66777776666677999999999999888888866542 4799999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.22 E-value=0.0018 Score=53.26 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=64.5
Q ss_pred cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcc
Q 013672 87 AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNAC 166 (438)
Q Consensus 87 ~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~ 166 (438)
..++.|++++.|. ++++.+++|||++.+-+...--... ..++.. . ..
T Consensus 7 ~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~------~-------------------~~ 53 (121)
T TIGR02281 7 DGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR------L-------------------GY 53 (121)
T ss_pred cCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc------C-------------------Cc
Confidence 4689999999998 7899999999999997754211100 011110 0 01
Q ss_pred eEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcCCcceeeecCC
Q 013672 167 EYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGAGLVGLGR 221 (438)
Q Consensus 167 ~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 221 (438)
...+.=+.|........-|.+++|+..+.|+.+.++.... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 2333334465444456889999999999999987775322 1389999876
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.73 E-value=0.011 Score=45.39 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=56.0
Q ss_pred EEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceEeeecC
Q 013672 94 MDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEYIYSYG 173 (438)
Q Consensus 94 ~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~Y~ 173 (438)
+++.|+ ++++.+++|||++.+.+......... ..+... .....+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~-------------------------~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPK-------------------------SVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCC-------------------------ceeEEEEeC
Confidence 467888 79999999999998877643221110 000000 012333333
Q ss_pred CCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcCCcceeeecC
Q 013672 174 DTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGAGLVGLG 220 (438)
Q Consensus 174 dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg 220 (438)
+|.........+.+++|+..+.++.|..... ....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIGGITLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEECCEEEEeEEEEEECC-----CCCCEEEeCCc
Confidence 4554455566779999999888888877762 22569999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.79 E-value=0.053 Score=44.80 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=54.0
Q ss_pred cEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEe
Q 013672 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIAD 390 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~ 390 (438)
.++||||++.+.++++..+++--......+..... ...+...+. .......++++|..+.+ ++++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~--~g~g~~~~~--------g~~~~~~l~i~~~~~~~---~~~V-- 93 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIA--KGVGTQKIL--------GRIHLAQVKIGNLFLPC---SFTV-- 93 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCcceEEEE--ecCCCcEEE--------eEEEEEEEEECCEEeee---EEEE--
Confidence 38999999999999998876332111100000000 000101110 02234566666655432 2222
Q ss_pred cCCCeEEEEEEcC-CCceeecHhhhcceEEEEECCCCEEEE
Q 013672 391 SSMGLACLAMGSS-SGMSIFGNVQQQNMLVLYDLAKETLSF 430 (438)
Q Consensus 391 ~~~~~~Cl~~~~~-~~~~ilG~~fl~~~y~vfD~~~~~iGf 430 (438)
.+. .-..|||..||+.+-.+.|+.+.+|-|
T Consensus 94 ----------l~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 94 ----------LEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred ----------ECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 121 235699999999999999999998854
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.70 E-value=0.08 Score=43.70 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=60.4
Q ss_pred CCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcce
Q 013672 88 GTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACE 167 (438)
Q Consensus 88 ~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~ 167 (438)
....+++++.|+ ++++.+++|||++..++...-+..+.... ... ..
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~~------~~~--------------------------~~ 58 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLMR------LID--------------------------KR 58 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCcc------ccC--------------------------cc
Confidence 467889999999 89999999999999988654322222110 000 11
Q ss_pred Ee-eecC-CCCeEEEEEEEEEEEECCcccceeEEEeeEcCCCCCcCCcceeeecCC
Q 013672 168 YI-YSYG-DTSSSQGVLATETLTFGDVSVPNIGFGCGSDNEGDGFSQGAGLVGLGR 221 (438)
Q Consensus 168 ~~-~~Y~-dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~GIlGLg~ 221 (438)
+. ...+ ++....|..-.+.+.+++..++ ..|.+.... ..++|||+-+
T Consensus 59 ~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~------~~d~ILG~d~ 107 (124)
T cd05479 59 FQGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD------DVDFLIGLDM 107 (124)
T ss_pred eEEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC------CcCEEecHHH
Confidence 22 1222 2334567777889999998765 666655322 4699999865
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.27 E-value=0.38 Score=46.61 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=56.2
Q ss_pred cEEEEEEeCCCC----cee-eEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCc
Q 013672 91 EYLMDLSIGSPA----VSF-SAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNA 165 (438)
Q Consensus 91 ~Y~~~v~iGtP~----q~~-~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~ 165 (438)
.=++.|+|=-|+ |.+ +|++||||.-+=|...--..-. .+...+..+..-.-. +|
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~l---~~~Lp~~t~~g~~la-----EC------------- 81 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSSL---AGSLPQQTGGGAPLA-----EC------------- 81 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchhh---hccCCcccCCCcchh-----hh-------------
Confidence 346777776553 566 8999999998866543110000 001111111000000 12
Q ss_pred ceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEeeEcC-----------CC-----CCcCCcceeeecCCC
Q 013672 166 CEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCGSDN-----------EG-----DGFSQGAGLVGLGRG 222 (438)
Q Consensus 166 ~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~-----------~~-----~~~~~~~GIlGLg~~ 222 (438)
..|++|. .=|-+.+-+|+|++....++.+-+..+. .+ .....+.||||+|.-
T Consensus 82 ----~~F~sgy-tWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ----AQFASGY-TWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ----hhccCcc-cccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 2456554 5588999999999974444444433221 01 101267999999964
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.87 E-value=0.14 Score=39.67 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 92 YLMDLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 92 Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
|++++.|+ ++++.+++||||+..++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 89999999999999999754
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.24 E-value=0.49 Score=36.15 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 95 DLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 95 ~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
.+.|. ++++.+++|||.+.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 46677 79999999999999998754
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=93.10 E-value=0.34 Score=39.79 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=28.1
Q ss_pred CCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHHHHH
Q 013672 277 QASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLV 331 (438)
Q Consensus 277 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~l 331 (438)
..++|.++ +.|||+++ .++||||++.+.++++..+++
T Consensus 8 ~~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 35666554 46788754 389999999999999988665
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=91.40 E-value=0.59 Score=41.45 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=61.5
Q ss_pred cccee-cCCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCC
Q 013672 82 KSSVH-AGTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQEC 160 (438)
Q Consensus 82 ~~p~~-~~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c 160 (438)
.+.+. ..++.|.++..|- +|+++.++|||-+.+-+....-. .--|+....
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~l--------------------- 145 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNSL--------------------- 145 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCcccc---------------------
Confidence 34444 6899999999998 89999999999999887654211 113333321
Q ss_pred CCCCcceEeeecCCCCeEEEEEEEEEEEECCcccceeEEEee
Q 013672 161 NANNACEYIYSYGDTSSSQGVLATETLTFGDVSVPNIGFGCG 202 (438)
Q Consensus 161 ~~~~~~~~~~~Y~dg~~~~G~~~~D~v~ig~~~~~~~~fg~~ 202 (438)
..++.+.-.+|......+-.|.|.||+..+.++.=-++
T Consensus 146 ----~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 146 ----DYTITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ----CCceEEEccCCccccceEEeeeEEEccEEEcCchhhee
Confidence 14566666778755556889999999988776654444
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.91 E-value=0.69 Score=38.76 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=55.3
Q ss_pred cEEEccccccccccHHHHHHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEEe
Q 013672 311 GLIIDSGTTLTYLIDSAFDLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIAD 390 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~ 390 (438)
.++||||++-.++....+.++--.+... +.+..- ....+. ..|. ...+.+.+.++|..+.... ++++
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l-~~~~~V-~~~g~~-----~~~~---~~~~~~~~~i~g~~~~~dl--~vl~- 100 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPL-PRPIVV-SAPGGS-----INCE---GVCPDVPLSIQGHEFVVDL--LVLD- 100 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEc-cCeeEE-eccccc-----cccc---ceeeeEEEEECCeEEEeee--EEec-
Confidence 4899999999999887765432111100 000000 000000 1111 1345566666664443211 1111
Q ss_pred cCCCeEEEEEEcCCCceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 391 SSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 391 ~~~~~~Cl~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
+ .+-+.|||..+|+.+...-|..+++|-|...
T Consensus 101 ---------l--~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 101 ---------L--GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ---------c--cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 1 1135699999999999999999999999753
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.14 E-value=0.44 Score=35.11 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCccEEEEEEeCCCCceeeEEEecCCCcceEeCCCC
Q 013672 88 GTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCKPC 123 (438)
Q Consensus 88 ~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~~c 123 (438)
..+.+++++.|| ++.+.+++|||++...|....+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 468899999999 7999999999999998876433
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=89.09 E-value=1.9 Score=36.83 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.0
Q ss_pred cEEEccccccccccHHHHHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLVKKEF 335 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l~~~~ 335 (438)
.++||||++....-.+..+.|-=..
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCcc
Confidence 4999999999999988887654333
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.37 E-value=3.3 Score=33.07 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.8
Q ss_pred CceeecHhhhcceEEEEECCCCEE
Q 013672 405 GMSIFGNVQQQNMLVLYDLAKETL 428 (438)
Q Consensus 405 ~~~ilG~~fl~~~y~vfD~~~~~i 428 (438)
+..+||..||+++-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 567999999999999999987653
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.57 E-value=1.4 Score=34.38 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.5
Q ss_pred EEEEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 93 LMDLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 93 ~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
+++|.|. ++++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 6778888 78999999999999988754
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.38 E-value=1.9 Score=32.60 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.7
Q ss_pred cEEEccccccccccHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLV 331 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l 331 (438)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 499999999999999988765
No 43
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=78.12 E-value=4.5 Score=36.10 Aligned_cols=95 Identities=11% Similarity=0.095 Sum_probs=49.9
Q ss_pred cEEEccccccccccHHHH-HHHHHHHHHhccCcccccCCCCCccceeecCCCCCccccceEEEEEcCcEEEeCCCCeEEE
Q 013672 311 GLIIDSGTTLTYLIDSAF-DLVKKEFISQTKLSVTDAADQTGLDVCFKLPSGSTDVEVPKLVFHFKGADVDLPPENYMIA 389 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~ 389 (438)
.++||||++.-.....+. +.+++..........++ ... -.+ ....+.+.+.++|..|.+|-- +
T Consensus 22 ~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an----~~~---~~i-----~~~~~~~~i~I~~~~F~IP~i---Y- 85 (201)
T PF02160_consen 22 HCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGAN----GSI---IQI-----NKKAKNGKIQIADKIFRIPTI---Y- 85 (201)
T ss_pred EEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEec----CCc---eEE-----EEEecCceEEEccEEEeccEE---E-
Confidence 489999999987755544 11222221111111111 000 000 114455666666666666522 2
Q ss_pred ecCCCeEEEEEEcCCCceeecHhhhcceEEEEECCCCEEEEee
Q 013672 390 DSSMGLACLAMGSSSGMSIFGNVQQQNMLVLYDLAKETLSFIP 432 (438)
Q Consensus 390 ~~~~~~~Cl~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 432 (438)
.+.++-+.|||.+|+|.|+=....+ .+|-|-.
T Consensus 86 ----------q~~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 86 ----------QQESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred ----------EecCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 1223457899999999887666654 4566654
No 44
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.54 E-value=2 Score=33.54 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHhhccc
Q 013672 8 SSAITFLLALATLALCVSPA 27 (438)
Q Consensus 8 ~~~~m~~~~~~~l~~~~~~~ 27 (438)
|.+++++.++++++|++++.
T Consensus 3 SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 56655555554444444433
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=76.33 E-value=3.6 Score=31.56 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=24.9
Q ss_pred EEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHHHHHH
Q 013672 288 ISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDLVK 332 (438)
Q Consensus 288 i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~l~ 332 (438)
+.|||+.+. +++|||++.+.++++.+.++-
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHhC
Confidence 577888763 899999999999999987653
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.83 E-value=4.5 Score=29.62 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.0
Q ss_pred cEEEccccccccccHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLV 331 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l 331 (438)
.+++|||.+-..++...++.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 389999999999999999776
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=75.74 E-value=3.3 Score=31.77 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.4
Q ss_pred EEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 95 DLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 95 ~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
.+.|+ +|.+++++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999988753
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.80 E-value=4.8 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.0
Q ss_pred cEEEccccccccccHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLV 331 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l 331 (438)
.+++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 389999999999999998875
No 49
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.63 E-value=6.5 Score=29.94 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.3
Q ss_pred cEEEccccccccccHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLV 331 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l 331 (438)
.++||||++.+.++.+..+++
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 499999999999999887665
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=61.78 E-value=15 Score=32.79 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCcceEEeeeeEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHHHH
Q 013672 277 QASFYYLPLEGISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDL 330 (438)
Q Consensus 277 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~ 330 (438)
..++|.++ ..|||+.+. .++|||.|.+.++++....
T Consensus 102 ~~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 46777654 468888864 8999999999999988754
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=54.49 E-value=11 Score=29.16 Aligned_cols=18 Identities=11% Similarity=0.490 Sum_probs=15.3
Q ss_pred cEEEccccccccccHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAF 328 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~ 328 (438)
.++||||+..+.++++.+
T Consensus 18 ~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 18 KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTBSSEEESSGGS
T ss_pred EEEEecCCCcceeccccc
Confidence 399999999999997644
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=53.52 E-value=17 Score=31.31 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=22.6
Q ss_pred EEEEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 93 LMDLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 93 ~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
...+.++.-+.+++++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555589999999999999988753
No 53
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=46.77 E-value=83 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.7
Q ss_pred CcEEEccccccccccHHHHH
Q 013672 310 GGLIIDSGTTLTYLIDSAFD 329 (438)
Q Consensus 310 ~~~iiDTGt~~~~lp~~~~~ 329 (438)
-..+||||+....+|....+
T Consensus 10 ~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 10 LRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred cEEEEeCCCceEeecccccc
Confidence 35899999999999976654
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.00 E-value=33 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCccEEEEEEeCCCCceeeEEEecCCCcceEeCC
Q 013672 88 GTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 88 ~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~~ 121 (438)
.....|++++|+ ++++.+++|||...+-+...
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 356789999999 89999999999999988643
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.76 E-value=26 Score=27.12 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=18.8
Q ss_pred cEEEccccccccccHHHHHHHH
Q 013672 311 GLIIDSGTTLTYLIDSAFDLVK 332 (438)
Q Consensus 311 ~~iiDTGt~~~~lp~~~~~~l~ 332 (438)
.+.+|||++...+|...+..+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999988886654
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=44.31 E-value=14 Score=30.08 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.2
Q ss_pred EEEccccc-cccccHHHHHHHH
Q 013672 312 LIIDSGTT-LTYLIDSAFDLVK 332 (438)
Q Consensus 312 ~iiDTGt~-~~~lp~~~~~~l~ 332 (438)
.+||||.+ ++.+|+.+++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999997653
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.87 E-value=30 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=22.5
Q ss_pred eEEEcCeeeecCCCCcccccCCCCcEEEccccccccccHHHHHH
Q 013672 287 GISVGGTRLPIDASNFALQEDGSGGLIIDSGTTLTYLIDSAFDL 330 (438)
Q Consensus 287 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~ 330 (438)
.+++||..+. +.||||+..+.++...+++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHH
Confidence 3567888763 9999999999999998876
No 58
>PF15240 Pro-rich: Proline-rich
Probab=42.33 E-value=15 Score=32.05 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhcccccC
Q 013672 12 TFLLALATLALCVSPAFSA 30 (438)
Q Consensus 12 m~~~~~~~l~~~~~~~~~~ 30 (438)
|+++||.+.+|++++|...
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 5555554444444544443
No 59
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=30.18 E-value=73 Score=18.17 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHh
Q 013672 8 SSAITFLLALATLALC 23 (438)
Q Consensus 8 ~~~~m~~~~~~~l~~~ 23 (438)
+..||+.+++.+++++
T Consensus 3 ~~~mmKkil~~l~a~~ 18 (25)
T PF08139_consen 3 SLSMMKKILFPLLALF 18 (25)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3467888887777665
No 60
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=26.58 E-value=69 Score=25.40 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=40.0
Q ss_pred EEEEeCCCC----ceeeEEEecCCCcce-EeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcceE
Q 013672 94 MDLSIGSPA----VSFSAILDTGSDLIW-TQCKPCQVCFDQATPIFDPKESSSYSKIPCSSALCKALPQQECNANNACEY 168 (438)
Q Consensus 94 ~~v~iGtP~----q~~~v~~DTGSs~~W-v~~~~c~~C~~~~~~~f~p~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~ 168 (438)
++|.|..|. -++.+++|||.+..- ++..-- ..-..++.. ..
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a------~~lgl~~~~----------------------------~~ 47 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIV------NKLGLPELD----------------------------QR 47 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHH------HHcCCCccc----------------------------Cc
Confidence 678888872 368999999998664 432100 000111111 12
Q ss_pred eeecCCCCeEEEEEEEEEEEECCccc
Q 013672 169 IYSYGDTSSSQGVLATETLTFGDVSV 194 (438)
Q Consensus 169 ~~~Y~dg~~~~G~~~~D~v~ig~~~~ 194 (438)
...-++|....-....+++.+++...
T Consensus 48 ~~~tA~G~~~~~~v~~~~v~igg~~~ 73 (107)
T TIGR03698 48 RVYLADGREVLTDVAKASIIINGLEI 73 (107)
T ss_pred EEEecCCcEEEEEEEEEEEEECCEEE
Confidence 33345576566678899999999754
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=24.67 E-value=4.4e+02 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=29.4
Q ss_pred E-EEEEcCC-CceeecHhhhcceEEEEECCCCEEEEeeC
Q 013672 397 C-LAMGSSS-GMSIFGNVQQQNMLVLYDLAKETLSFIPT 433 (438)
Q Consensus 397 C-l~~~~~~-~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 433 (438)
| +.++... -...||.-.||++--.-|++++++-|+..
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 6 3455553 45689999999999999999998888754
No 62
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=23.99 E-value=97 Score=29.02 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=23.4
Q ss_pred ccEEEE---EEeCC---CCceeeEEEecCCCcceEeCC
Q 013672 90 GEYLMD---LSIGS---PAVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 90 ~~Y~~~---v~iGt---P~q~~~v~~DTGSs~~Wv~~~ 121 (438)
..|.++ |.||. +.....+++|||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567665 58873 223467999999999999864
No 63
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=21.27 E-value=1.1e+02 Score=28.36 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=23.2
Q ss_pred CccEEEE---EEeCCC-------------CceeeEEEecCCCcceEeCC
Q 013672 89 TGEYLMD---LSIGSP-------------AVSFSAILDTGSDLIWTQCK 121 (438)
Q Consensus 89 ~~~Y~~~---v~iGtP-------------~q~~~v~~DTGSs~~Wv~~~ 121 (438)
...|.++ |+||.- .....+++|||++.+.++..
T Consensus 145 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 145 PTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 4566654 678841 12456899999999999864
No 64
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=20.82 E-value=1.2e+02 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCccEEEEEEeCCCCceeeEEEecCCCcceEeC
Q 013672 88 GTGEYLMDLSIGSPAVSFSAILDTGSDLIWTQC 120 (438)
Q Consensus 88 ~~~~Y~~~v~iGtP~q~~~v~~DTGSs~~Wv~~ 120 (438)
....-.+.+.|. .++..+++|+|++..+|..
T Consensus 18 ~~~vi~g~~~I~--~~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 18 SPDVITGTFLIN--SIPASVLIDSGATHSFISS 48 (135)
T ss_pred CCCeEEEEEEec--cEEEEEEEecCCCcEEccH
Confidence 345667788888 5999999999999998864
No 65
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.35 E-value=72 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhc-ccccC
Q 013672 13 FLLALATLALCVS-PAFSA 30 (438)
Q Consensus 13 ~~~~~~~l~~~~~-~~~~~ 30 (438)
+++++++||+++. .+++|
T Consensus 4 Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSA 22 (65)
T ss_pred hhhHHHHHHHHHHHHHhcC
Confidence 4555555555433 33444
No 66
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.27 E-value=88 Score=21.96 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=16.3
Q ss_pred EEEeCCCCceeeEEEecCCCcceE
Q 013672 95 DLSIGSPAVSFSAILDTGSDLIWT 118 (438)
Q Consensus 95 ~v~iGtP~q~~~v~~DTGSs~~Wv 118 (438)
++.++ +..+.+++|||+...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 45566 48899999999886543
Done!