Query 013674
Match_columns 438
No_of_seqs 255 out of 588
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 97.9 1.1E-05 2.3E-10 51.0 3.4 21 96-116 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.7 0.00013 2.9E-09 82.2 9.2 66 93-162 670-736 (862)
3 PF13178 DUF4005: Protein of u 97.4 0.00015 3.3E-09 62.5 4.2 41 329-389 34-79 (102)
4 smart00015 IQ Short calmodulin 97.4 0.00015 3.3E-09 47.8 3.1 22 95-116 2-23 (26)
5 KOG0160 Myosin class V heavy c 96.9 0.0034 7.3E-08 71.3 8.9 67 92-161 692-758 (862)
6 KOG0520 Uncharacterized conser 96.8 0.00081 1.8E-08 76.6 3.6 73 95-167 809-889 (975)
7 PTZ00014 myosin-A; Provisional 96.4 0.0048 1E-07 70.0 6.3 41 97-137 778-819 (821)
8 COG5022 Myosin heavy chain [Cy 95.1 0.056 1.2E-06 64.2 7.7 70 91-161 740-810 (1463)
9 KOG2128 Ras GTPase-activating 94.9 0.064 1.4E-06 63.4 7.7 74 91-164 559-642 (1401)
10 PF00612 IQ: IQ calmodulin-bin 94.8 0.031 6.7E-07 35.2 2.7 19 119-137 2-20 (21)
11 KOG0164 Myosin class I heavy c 93.8 0.23 4.9E-06 56.0 8.5 59 93-162 693-752 (1001)
12 smart00015 IQ Short calmodulin 92.2 0.14 3E-06 33.6 2.5 19 119-137 4-22 (26)
13 KOG0520 Uncharacterized conser 92.1 0.35 7.5E-06 56.0 7.2 65 96-160 833-930 (975)
14 PTZ00014 myosin-A; Provisional 91.1 0.54 1.2E-05 53.9 7.3 40 120-162 779-818 (821)
15 KOG2128 Ras GTPase-activating 83.0 2.1 4.5E-05 51.4 5.9 61 100-163 539-611 (1401)
16 KOG0163 Myosin class VI heavy 83.0 22 0.00049 41.2 13.5 35 93-127 810-845 (1259)
17 KOG4427 E3 ubiquitin protein l 82.8 1.3 2.8E-05 50.5 4.0 24 93-116 27-50 (1096)
18 KOG0942 E3 ubiquitin protein l 80.3 1.4 3E-05 50.9 3.2 26 91-116 24-49 (1001)
19 KOG0161 Myosin class II heavy 76.9 5.3 0.00011 49.9 6.8 38 121-158 776-813 (1930)
20 KOG0377 Protein serine/threoni 73.9 5 0.00011 43.7 5.0 44 93-136 14-58 (631)
21 KOG0162 Myosin class I heavy c 65.4 5.4 0.00012 45.7 3.2 39 97-138 697-736 (1106)
22 KOG0161 Myosin class II heavy 64.1 26 0.00057 44.1 8.8 45 93-137 770-818 (1930)
23 COG5022 Myosin heavy chain [Cy 51.8 1.5E+02 0.0032 36.8 11.8 60 98-160 770-833 (1463)
24 PF08763 Ca_chan_IQ: Voltage g 48.3 20 0.00044 26.1 2.7 21 95-115 8-28 (35)
25 KOG0165 Microtubule-associated 41.4 71 0.0015 37.2 6.9 35 93-127 940-975 (1023)
26 PF15157 IQ-like: IQ-like 33.1 37 0.00081 29.5 2.5 21 96-116 47-67 (97)
27 KOG0164 Myosin class I heavy c 25.8 4.6E+02 0.0099 31.0 9.9 38 121-162 699-736 (1001)
28 KOG4427 E3 ubiquitin protein l 23.9 1.9E+02 0.0042 34.0 6.6 24 119-142 31-54 (1096)
29 KOG0942 E3 ubiquitin protein l 22.7 1.1E+02 0.0024 36.2 4.6 26 117-142 28-53 (1001)
30 KOG0163 Myosin class VI heavy 21.6 96 0.0021 36.4 3.8 21 120-140 815-835 (1259)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.94 E-value=1.1e-05 Score=51.00 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 013674 96 EWAATCIQTAFRGFLARRALR 116 (438)
Q Consensus 96 e~AAI~IQsafRGyLARr~lr 116 (438)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999985
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.68 E-value=0.00013 Score=82.17 Aligned_cols=66 Identities=29% Similarity=0.312 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 013674 93 VREEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lraLk-giVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~s 162 (438)
.....+++.||..||||+.|+.|..++ +++.+|+++||++.|+ ..+ ...|++.||..+|++..|+.
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence 445667888999999999999999555 8889999999999998 222 56677777777777776664
No 3
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=97.42 E-value=0.00015 Score=62.50 Aligned_cols=41 Identities=41% Similarity=0.591 Sum_probs=36.8
Q ss_pred Ccch-hhhcccCCCCCCCchhhhhhhcCCCCCCccCCCCCccccccCC----CccccccccCCCCC
Q 013674 329 MLEA-TATQLAKPKSKPPVEDLMEEANSRPAGISSRSHSNPKERTTQS----DKPVKKRLSLPNNA 389 (438)
Q Consensus 329 ~~~~-~~~~s~k~k~k~~~~~~~~e~~s~p~~~~~rs~snpKer~~~~----~~~~kkrlSlp~~~ 389 (438)
+|.| ++|+|+|+| .||.|.||+|+... ...+++|+|||...
T Consensus 34 ~PsYMa~TeSakAK--------------------~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~ 79 (102)
T PF13178_consen 34 LPSYMAATESAKAK--------------------ARSQSAPRQRPGTPERAEKQSSKKRLSLPGSS 79 (102)
T ss_pred CCCccchhhhhhhh--------------------hhccCCcccCCCccccccccccccccccCCCC
Confidence 8999 999999999 89999999999984 46789999999654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.41 E-value=0.00015 Score=47.76 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 013674 95 EEWAATCIQTAFRGFLARRALR 116 (438)
Q Consensus 95 ee~AAI~IQsafRGyLARr~lr 116 (438)
++.||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.88 E-value=0.0034 Score=71.25 Aligned_cols=67 Identities=27% Similarity=0.252 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013674 92 VVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRL 161 (438)
Q Consensus 92 ~~ree~AAI~IQsafRGyLARr~lraLkgiVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~ 161 (438)
++....+++.||+.+||+++|+........+.+|..+|+++.|++|... ..+++.||+.+|+..+|.
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 4677889999999999999998333445789999999999999999544 789999999999999997
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.83 E-value=0.00081 Score=76.57 Aligned_cols=73 Identities=30% Similarity=0.371 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHH------H-HHhHHHHHHHHHHHHHHHHhhhhh
Q 013674 95 EEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITL------R-CMQALVRVQARVRARRVRLALESQ 166 (438)
Q Consensus 95 ee~AAI~IQsafRGyLARr~lraLk-giVrLQAlvRG~lVRrqaa~tl------r-~m~AaVrIQs~vRgr~~R~s~E~q 166 (438)
.-.||..||.-||||+.|+.|..++ =+|+||+.+||+.+|++|.... + -..++-++|+.+|++..|...|.+
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 3468999999999999999999766 6999999999999999997322 2 456677799999999988776555
Q ss_pred h
Q 013674 167 T 167 (438)
Q Consensus 167 ~ 167 (438)
.
T Consensus 889 ~ 889 (975)
T KOG0520|consen 889 E 889 (975)
T ss_pred c
Confidence 3
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.44 E-value=0.0048 Score=69.96 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHH-hhhHHHHHHHhhhhHHHHHH
Q 013674 97 WAATCIQTAFRGFLARRALRA-LKGLVRLQALVRGHAVRKQA 137 (438)
Q Consensus 97 ~AAI~IQsafRGyLARr~lra-LkgiVrLQAlvRG~lVRrqa 137 (438)
..++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999995 55899999999999998753
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.07 E-value=0.056 Score=64.15 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013674 91 QVVREEWAATCIQTAFRGFLARRALR-ALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRL 161 (438)
Q Consensus 91 e~~ree~AAI~IQsafRGyLARr~lr-aLkgiVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~ 161 (438)
+...-...+++||++||||+.|++|. +++.+..+|.+.+|..+|+.+...+ -..+.+++|..+|...-|.
T Consensus 740 Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 740 RDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHH
Confidence 33455779999999999999999998 7888888888888888886664332 2567777777777655553
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.94 E-value=0.064 Score=63.38 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=59.5
Q ss_pred hHHH-HHHHHHHHHHHhhhHHH---HHHHH--HhhhHHHHHHHhhhhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH
Q 013674 91 QVVR-EEWAATCIQTAFRGFLA---RRALR--ALKGLVRLQALVRGHAVRKQAAITL----RCMQALVRVQARVRARRVR 160 (438)
Q Consensus 91 e~~r-ee~AAI~IQsafRGyLA---Rr~lr--aLkgiVrLQAlvRG~lVRrqaa~tl----r~m~AaVrIQs~vRgr~~R 160 (438)
.++. .....+.||.++|||+. +..+. ..+-+|.+|++.||+++|+.+...+ .||...+.||+.+|++..|
T Consensus 559 ~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 559 DFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred hHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccc
Confidence 3444 56788999999999994 22333 5668999999999999999998443 4999999999999999998
Q ss_pred Hhhh
Q 013674 161 LALE 164 (438)
Q Consensus 161 ~s~E 164 (438)
....
T Consensus 639 ~~y~ 642 (1401)
T KOG2128|consen 639 KDYK 642 (1401)
T ss_pred hHHH
Confidence 7643
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.82 E-value=0.031 Score=35.17 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 013674 119 KGLVRLQALVRGHAVRKQA 137 (438)
Q Consensus 119 kgiVrLQAlvRG~lVRrqa 137 (438)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4688899999999999876
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=93.81 E-value=0.23 Score=56.02 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 013674 93 VREEWAATCIQTAFRGFLARRALRALKG-LVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lraLkg-iVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~s 162 (438)
.+--.-|+.||.+|||+++|..|+.|+. ++.++ .+|.+-++ ..+-.||.++|+.+.++.
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhccc
Confidence 3344578999999999999999998885 44445 55633333 345568889999877654
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.20 E-value=0.14 Score=33.64 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.7
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 013674 119 KGLVRLQALVRGHAVRKQA 137 (438)
Q Consensus 119 kgiVrLQAlvRG~lVRrqa 137 (438)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999987
No 13
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.15 E-value=0.35 Score=55.99 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-h----------HHHHHHHhhhhHHHHHHH----------------------HHHH
Q 013674 96 EWAATCIQTAFRGFLARRALRALK-G----------LVRLQALVRGHAVRKQAA----------------------ITLR 142 (438)
Q Consensus 96 e~AAI~IQsafRGyLARr~lraLk-g----------iVrLQAlvRG~lVRrqaa----------------------~tlr 142 (438)
..=+|+||+++|||..|+.|+.|- + .-++|.-+||+..|..+. ...+
T Consensus 833 r~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r 912 (975)
T KOG0520|consen 833 RQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER 912 (975)
T ss_pred CCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999333 2 223488889987765432 2223
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 013674 143 CMQALVRVQARVRARRVR 160 (438)
Q Consensus 143 ~m~AaVrIQs~vRgr~~R 160 (438)
--+|+++||+.+|....+
T Consensus 913 ~~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 913 LTRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 458999999999987776
No 14
>PTZ00014 myosin-A; Provisional
Probab=91.08 E-value=0.54 Score=53.85 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=34.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 013674 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (438)
Q Consensus 120 giVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~s 162 (438)
-++.||+.+||++.|+.+. +..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999994 447899999999999988754
No 15
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=83.03 E-value=2.1 Score=51.38 Aligned_cols=61 Identities=30% Similarity=0.275 Sum_probs=47.6
Q ss_pred HHHHHHhhhHHHHHHHHHhh--------hHHHHHHHhhhhHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhh
Q 013674 100 TCIQTAFRGFLARRALRALK--------GLVRLQALVRGHAVRKQAAI----TLRCMQALVRVQARVRARRVRLAL 163 (438)
Q Consensus 100 I~IQsafRGyLARr~lraLk--------giVrLQAlvRG~lVRrqaa~----tlr~m~AaVrIQs~vRgr~~R~s~ 163 (438)
.+||+..|||..|.+++... .++.+|+++||+++ +.. ......-+|++|+..|+...|...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 34599999999999998544 47788999999986 321 122456789999999999999763
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.99 E-value=22 Score=41.17 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHH
Q 013674 93 VREEWAATCIQTAFRGFLARRALR-ALKGLVRLQAL 127 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lr-aLkgiVrLQAl 127 (438)
+-...+.+++|+..||||+|++++ .+-|+.++-+|
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 445567899999999999999998 55566555443
No 17
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=1.3 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 013674 93 VREEWAATCIQTAFRGFLARRALR 116 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lr 116 (438)
.+.+.||+.||..+|||++|+.+.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=1.4 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHH
Q 013674 91 QVVREEWAATCIQTAFRGFLARRALR 116 (438)
Q Consensus 91 e~~ree~AAI~IQsafRGyLARr~lr 116 (438)
+..++|.+|++||+.||||++|++++
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44677899999999999999999887
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.91 E-value=5.3 Score=49.90 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013674 121 LVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARR 158 (438)
Q Consensus 121 iVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~ 158 (438)
|+.+||.||||++|+.|...+..+.|+..||..+|.+.
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777766667777777777777663
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=73.94 E-value=5 Score=43.68 Aligned_cols=44 Identities=27% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHh-hhhHHHHH
Q 013674 93 VREEWAATCIQTAFRGFLARRALRALKGLVRLQALV-RGHAVRKQ 136 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lraLkgiVrLQAlv-RG~lVRrq 136 (438)
.+.-.||+.||.-||+|.||.+.+..-....+|++= -|.+-.-+
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ~k 58 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQAK 58 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccchHH
Confidence 456789999999999999999988766666777764 34444433
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=65.42 E-value=5.4 Score=45.69 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHHhhhhHHHHHHH
Q 013674 97 WAATCIQTAFRGFLARRALRALKG-LVRLQALVRGHAVRKQAA 138 (438)
Q Consensus 97 ~AAI~IQsafRGyLARr~lraLkg-iVrLQAlvRG~lVRrqaa 138 (438)
-=|.+||.|||.|++||.|..||- ... |+-|.-.||.+.
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRYS 736 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 468999999999999999998872 122 344555555553
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.08 E-value=26 Score=44.13 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH----hhhHHHHHHHhhhhHHHHHH
Q 013674 93 VREEWAATCIQTAFRGFLARRALRA----LKGLVRLQALVRGHAVRKQA 137 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lra----LkgiVrLQAlvRG~lVRrqa 137 (438)
.....-.+.+|+++||||+|+.|.. +-+|..||.=+|-++..|..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445567889999999999999983 33888899988888666544
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=51.78 E-value=1.5e+02 Score=36.85 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhHHHHHHHH---HhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Q 013674 98 AATCIQTAFRGFLARRALR---ALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQ-ARVRARRVR 160 (438)
Q Consensus 98 AAI~IQsafRGyLARr~lr---aLkgiVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQ-s~vRgr~~R 160 (438)
....||..-+|++.|+.+. -++..++||.+++...-|+.+... ...+..+| ...+.+.++
T Consensus 770 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~---~~~i~~lq~~i~~~~~~~ 833 (1463)
T COG5022 770 RIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY---LACIIKLQKTIKREKKLR 833 (1463)
T ss_pred HHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 3344455556666666555 345677777777777777776443 34445555 344444443
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=48.32 E-value=20 Score=26.08 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 013674 95 EEWAATCIQTAFRGFLARRAL 115 (438)
Q Consensus 95 ee~AAI~IQsafRGyLARr~l 115 (438)
.--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999864
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=41.44 E-value=71 Score=37.24 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHH
Q 013674 93 VREEWAATCIQTAFRGFLARRALR-ALKGLVRLQAL 127 (438)
Q Consensus 93 ~ree~AAI~IQsafRGyLARr~lr-aLkgiVrLQAl 127 (438)
+....||+.||.+.|||.+|+.|+ .+-.|-.+-++
T Consensus 940 enkKkaavviqkmirgfiarrkfqmeisniRnrmiq 975 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQ 975 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445679999999999999999998 44444444443
No 26
>PF15157 IQ-like: IQ-like
Probab=33.07 E-value=37 Score=29.53 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 013674 96 EWAATCIQTAFRGFLARRALR 116 (438)
Q Consensus 96 e~AAI~IQsafRGyLARr~lr 116 (438)
|.-+.+||.+||-|++|....
T Consensus 47 eskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCCc
Confidence 445788999999999998754
No 27
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=25.82 E-value=4.6e+02 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 013674 121 LVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (438)
Q Consensus 121 iVrLQAlvRG~lVRrqaa~tlr~m~AaVrIQs~vRgr~~R~s 162 (438)
++.||..+||.++|..+.. |.++..|=..+|...++-.
T Consensus 699 vtllQK~~RG~~~R~ry~r----mka~~~ii~wyR~~K~ks~ 736 (1001)
T KOG0164|consen 699 VTLLQKAWRGWLARQRYRR----MKASATIIRWYRRYKLKSY 736 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 6778999999999998832 3444333337776666543
No 28
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=1.9e+02 Score=33.98 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHH
Q 013674 119 KGLVRLQALVRGHAVRKQAAITLR 142 (438)
Q Consensus 119 kgiVrLQAlvRG~lVRrqaa~tlr 142 (438)
...+.||+.+|||++|+++...++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999975433
No 29
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=1.1e+02 Score=36.19 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.8
Q ss_pred HhhhHHHHHHHhhhhHHHHHHHHHHH
Q 013674 117 ALKGLVRLQALVRGHAVRKQAAITLR 142 (438)
Q Consensus 117 aLkgiVrLQAlvRG~lVRrqaa~tlr 142 (438)
..++.|.+|.++||+.+|++.....|
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998865544
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=21.59 E-value=96 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHH
Q 013674 120 GLVRLQALVRGHAVRKQAAIT 140 (438)
Q Consensus 120 giVrLQAlvRG~lVRrqaa~t 140 (438)
.++++|+.+||+++|+++...
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchH
Confidence 578889999999999998643
Done!