BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013675
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/364 (49%), Positives = 252/364 (69%), Gaps = 13/364 (3%)
Query: 72 GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
G+ A + +D ++S +K R+ + + LPRAGL I E +
Sbjct: 39 GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 98
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W+ G SG VY G E H + +NE ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 99 AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 155
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
LG A+GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH+A+DKAA
Sbjct: 156 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 213
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
QYF IKL R P+D ++RADV A+++ I NTV++ GSAPG+PHG++DPI E+ LA HG
Sbjct: 214 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 273
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG KGTSV+LYR +
Sbjct: 274 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD 333
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 334 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 393
Query: 424 QKGL 427
+ G+
Sbjct: 394 KAGV 397
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72 GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
G+ A + +D ++S +K R+ + + LPRAGL I E +
Sbjct: 35 GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W+ G SG VY G E H + +NE ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95 AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
LG A+GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
QYF IKL R P+D ++RADV A+++ I NTV++ GSAPG PHG++DPI E+ LA HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D HKYG KGTSV+LYR +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
+ G+
Sbjct: 390 KAGV 393
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72 GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
G+ A + +D ++S +K R+ + + LPRAGL I E +
Sbjct: 35 GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W+ G SG VY G E H + +NE ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95 AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
LG A+GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
QYF IKL R P+D ++RADV A+++ I NTV++ GSAPG+PHG++DPI E+ LA HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG KGTSV+LYR +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
+ G+
Sbjct: 390 KAGV 393
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72 GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
G+ A + +D ++S +K R+ + + LPRAGL I E +
Sbjct: 39 GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 98
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W+ G SG VY G E H + +NE ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 99 AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 155
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
LG A+GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH+A+DKAA
Sbjct: 156 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 213
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
QYF IKL R P+D ++RADV A+++ I NTV++ GSAPG+PHG++DPI E+ LA HG
Sbjct: 214 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 273
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG KGTSV+LYR +
Sbjct: 274 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPD 333
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 334 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 393
Query: 424 QKGL 427
+ G+
Sbjct: 394 KAGV 397
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 251/364 (68%), Gaps = 13/364 (3%)
Query: 72 GVNKYIEAEKQKVVD---KMQSGVKSKREGWWTE--LPRAGLGVGVI--EKLKEEKGKDV 124
G+ A + +D ++S +K R+ + + LPRAGL I E +
Sbjct: 35 GIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESP 94
Query: 125 VWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W+ G SG VY G E H + +NE ++ + +NPLH D++ S A+FEAEV+AMTA +
Sbjct: 95 AWRDGYASGAVYHGD---EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHM 151
Query: 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243
LG A+GG VCG +TSGGTES+LLA+K+ RD+ R +GIT PE ++PVSAH+A+DKAA
Sbjct: 152 LGGD--AAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209
Query: 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
QYF IKL R P+D ++RADV A+++ I NTV++ GSAPG+PHG++DPI E+ LA HG
Sbjct: 210 QYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
HVD CLGGF+LP+A++LGYP+PPFDF ++GVTS+S D H YG KGTSV+LYR +
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPD 329
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+ +Q+ +W GGLY SPT AGSRPG L A AWAA++SLG+EGYL+ T+ I++ ++ +
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 424 QKGL 427
+ G+
Sbjct: 390 KAGV 393
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/362 (43%), Positives = 228/362 (62%), Gaps = 21/362 (5%)
Query: 73 VNKYIEAEKQKVVDKMQSGVKSKREGW-WTELPRAGLGVG-VIEKLKEEKGKDVV----W 126
V K + KQ + D++ ++S + + +LP G+ VIE+L K D++ W
Sbjct: 10 VEKEVTKVKQSIEDEL---IRSDSQLMNFPQLPSNGIPQDDVIEELN--KLNDLIPHTQW 64
Query: 127 -QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
+GK SG VY GG + H I A + N LH D+F +V + E+EV++M +
Sbjct: 65 KEGKVSGAVYHGGDDLI-HLQTI--AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF- 120
Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
A CG TSGGTES+LLA S++ Y + RGIT PE+I PV+AH+ +DKAA Y
Sbjct: 121 ---NAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYY 177
Query: 246 FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
F +KL V +D ++ D+ +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A +
Sbjct: 178 FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL 237
Query: 305 CLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
LHVD CLG F++ F +K GY +P DF V GVTSIS D HKYG APKG+SV++YRN +
Sbjct: 238 PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSD 297
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+R HQ+ W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+ +
Sbjct: 298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357
Query: 424 QK 425
+K
Sbjct: 358 KK 359
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 21/362 (5%)
Query: 73 VNKYIEAEKQKVVDKMQSGVKSKREGW-WTELPRAGLGVG-VIEKLKEEKGKDVV----W 126
V K + KQ + D++ ++S + + +LP G+ VIE+L K D++ W
Sbjct: 10 VEKEVTKVKQSIEDEL---IRSDSQLMNFPQLPSNGIPQDDVIEELN--KLNDLIPHTQW 64
Query: 127 -QGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG 185
+GK SG VY GG + H I A + N LH D+F +V + E+EV++M +
Sbjct: 65 KEGKVSGAVYHGGDDLI-HLQTI--AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF- 120
Query: 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245
A CG TSGGTES+LLA S++ Y + RGIT PE+I PV+AH+ +DKAA Y
Sbjct: 121 ---NAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYY 177
Query: 246 FNIKLWRVPVD-KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGT 304
F +KL V +D ++ D+ +KK+IN+NTVL+VGSAP FPHGI D I+ LG++A +
Sbjct: 178 FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL 237
Query: 305 CLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
LHVD CLG F++ F +K GY +P DF V GVTSIS D H YG APKG+SV++YRN +
Sbjct: 238 PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSD 297
Query: 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
+R HQ+ W+GGLY SPT+AGSRPG ++ G WA ++++G+ GY+E+ + I+ +
Sbjct: 298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357
Query: 424 QK 425
+K
Sbjct: 358 KK 359
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 160/310 (51%), Gaps = 31/310 (10%)
Query: 112 VIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVAR 171
++E+LK+ + D+ ++ G ++ GS + + +F TN +F+
Sbjct: 15 ILEELKKYRSLDLKYE---DGNIF--GSXCSNVLPITRKIVDIFLETNLGDPGLFKGTKL 69
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR--GITR--- 226
E + +A+ +LL NK+ G++ SGGTE+ L A++ ++ R KR G+++
Sbjct: 70 LEEKAVALLGSLLNNKDAY------GHIVSGGTEANLXALRCIKNIWREKRRKGLSKNEH 123
Query: 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVL-IVGSAPGFP 285
P++I+P++AH +++K + +++ P+ +++ D K +K + V I+G A
Sbjct: 124 PKIIVPITAHFSFEKGREXXDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE 183
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA----KKLGYPIPPFDFSVQGVTSIS 341
G ID I+EL ++A + +HVD GG V+PF KK G FDFS+ GV SI+
Sbjct: 184 LGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNY-KFDFSL-GVDSIT 241
Query: 342 VDVHKYGLAPKGTSVVLYRNREIRKHQFVA---VTEWSGGLYVSPTVAGSRPGGLIAGAW 398
+D HK G P + +L+++ +++ V +TE T+ G+R G A +
Sbjct: 242 IDPHKXGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR-----QATILGTRVGFGGACTY 296
Query: 399 AALMSLGQEG 408
A L LG+EG
Sbjct: 297 AVLRYLGREG 306
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 23/286 (8%)
Query: 157 HTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRD 216
+ N + +D + + + M A L N G T G +E+I+LA + +
Sbjct: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLF-NAPLEEAETAVGVGTVGSSEAIMLAGLAFKR 139
Query: 217 YMRNKRG-----ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRA-DVKAIKKYI 270
+NKR + +P ++ + ++K A+YF ++L V + + + D + +
Sbjct: 140 KWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV 199
Query: 271 NRNTVLIVGSAPGFPHGIIDPIQELGELALSHG------TCLHVDLCLGGFVLPFAKKLG 324
+ NT+ + +G + ++ L +L + T +HVD GGF+ PF
Sbjct: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL---- 255
Query: 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
YP +DF + V SI+V H YGL G V++RN+E + + + G + T
Sbjct: 256 YPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFT 315
Query: 385 VAGSRPGGLIAGAWAALMSLGQEGY---LENTKAIMEVSESIQKGL 427
+ S+ + + L+ LG EGY +EN + M V +++GL
Sbjct: 316 LNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIV---LREGL 358
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
+ A + + M A L + GQ G T G +E+ +L + + R +
Sbjct: 90 YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 148
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
+ +P ++ PV + K A+Y++++L +P+ + D K + + + NT+ +V
Sbjct: 149 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 206
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
+ P H +D Q + + +H+D GGF+ PF P
Sbjct: 207 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 258
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
+DF + V SIS HK+GLAP G V++R+ E + V ++ GG + + S
Sbjct: 259 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 318
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
RP G + + + LG+EGY + A +V+
Sbjct: 319 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 350
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
+ A + + M A L + GQ G T G +E+ +L + + R +
Sbjct: 76 YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 134
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
+ +P ++ PV + K A+Y++++L +P+ + D K + + + NT+ +V
Sbjct: 135 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 192
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
+ P H +D Q + + +H+D GGF+ PF P
Sbjct: 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 244
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
+DF + V SIS HK+GLAP G V++R+ E + V ++ GG + + S
Sbjct: 245 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 304
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
RP G + + + LG+EGY + A +V+
Sbjct: 305 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 336
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 28/272 (10%)
Query: 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK---- 221
+ A + + M A L + GQ G T G +E+ +L + + R +
Sbjct: 90 YPQSAAIDLRCVNMVADLW-HAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 148
Query: 222 -RGITRPEMII-PVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIV 278
+ +P ++ PV + K A+Y++++L +P+ + D K + + + NT+ +V
Sbjct: 149 GKPTDKPNLVCGPVQI--CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVV 206
Query: 279 GSA----------PGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328
+ P H +D Q + + +H+D GGF+ PF P
Sbjct: 207 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDID----MHIDAASGGFLAPFVA----PDI 258
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
+DF + V SIS HK+GLAP G V++R+ E + V ++ GG + + S
Sbjct: 259 VWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFS 318
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
RP G + + + LG+EGY + A +V+
Sbjct: 319 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 350
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 260 RADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319
R V+ + + + +T+L+ G+I P+ EL + + T LHVD G +
Sbjct: 146 RISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQG-----Y 200
Query: 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
K G P D IS+ HK G APKG ++ R RE
Sbjct: 201 GKVPGDLTTPIDM-------ISISGHKIG-APKGVGALVTRRRE 236
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 197 GNMTSGGTESILLAVKSSRDYMRNK------RGITRPE------MIIPVSAHSAYDKAAQ 244
G TSGGT+S + +RD++ +K + + P+ ++ +H K+A
Sbjct: 161 GIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS 220
Query: 245 YFNI---KLWRVPVDKEFRADVKAIKKYINRNTV------LIVGSAPGFPHGIIDPIQEL 295
+ + + V + + D+ + + I + IVG+A HG ID + +
Sbjct: 221 WXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFI 280
Query: 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK 346
+ A+ H HVD GG ++ + K V+ SISVD HK
Sbjct: 281 ADXAVKHDXWXHVDGAYGGALILSSHKSRLK------GVERAHSISVDFHK 325
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 158 TNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY 217
++P ++ +V + A+++ + L + + GG G + S +ES L+A+ ++R
Sbjct: 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGG---GVLQSTVSESTLIALLAARKN 168
Query: 218 MRNKRGITRPE---------MIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAI 266
+ + P+ ++ S AHS+ +KA +K+ +PVD F +A+
Sbjct: 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEAL 228
Query: 267 KKYI----NRNTVLIVGSAPGFPHGI--IDPIQELGELALSHGTCLHVDLCLGG--FVLP 318
+K I R V + A G+ D + ELG + G LH+D G F+ P
Sbjct: 229 QKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCP 288
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM----- 229
+++ + A L K GG + G+ +E+ L+A+ ++R + ++ PE+
Sbjct: 124 KMLELPKAFLNEKAGEGGGVIQGS----ASEATLVALLAARTKVIHRLQAASPELTQAAI 179
Query: 230 ---IIPVS---AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPG 283
++ S AHS+ ++A +KL +P D F A+++ + R+ G P
Sbjct: 180 MEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA--AGLIPF 237
Query: 284 FPHGII--------DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ 335
F + D + E+G + LHVD G + P F +
Sbjct: 238 FMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAG--------SAFICPEFRHLLN 289
Query: 336 GV---TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
GV S + + HK+ L S + + R T+ +G + PT
Sbjct: 290 GVEFADSFNFNPHKWLLVNFDCSAMWVKKR----------TDLTGAFRLDPT 331
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYINRNTVLIVGSAPGFP 285
E++IP A +Y A K VP + EFR +V +KKY+ T ++ ++P P
Sbjct: 112 EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNP 171
Query: 286 HGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331
G + ++E+ + + H + D F+ A+ Y I D
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH--YSIASLD 218
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYINRNTVLIVGSAPGFP 285
E++IP A +Y A K VP + EFR +V +KKY+ T ++ ++P P
Sbjct: 113 EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNP 172
Query: 286 HGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331
G + ++E+ + + H + D F+ A+ Y I D
Sbjct: 173 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH--YSIASLD 219
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 200 TSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---PV 255
TS TESI +K+ + + + KR I + P+ H A + +Y ++K ++V PV
Sbjct: 67 TSCATESINWILKTVAETFEKRKRTI----ITTPIE-HKAVLETMKYLSMKGFKVKYVPV 121
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLG 313
D ++ ++K ++ +T L+ A G I P++++ + T +HVD
Sbjct: 122 DSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV-- 179
Query: 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
+ +G PF V S HK+ PKG + R
Sbjct: 180 -------QTIGK--IPFSLEKLEVDYASFSAHKFH-GPKGVGITYIR 216
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN---I 248
GG V TSG TE+ LA+ MRN R +++ H + A++
Sbjct: 60 GGTVV--FTSGATEANNLAIIGYA--MRNAR--KGKHILVSAVEHMSVINPAKFLQKQGF 113
Query: 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308
++ +PV K DV I + + +T+L+ G I P++E+ E+ L+ LH+
Sbjct: 114 EVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEV-LAGKAALHI 172
Query: 309 D 309
D
Sbjct: 173 D 173
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 199 MTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---P 254
TS TESI +K+ + + + KR I + P+ H A + +Y + K ++V P
Sbjct: 66 FTSCATESINWILKTVAETFEKRKRTI----ITTPIE-HKAVLETXKYLSXKGFKVKYVP 120
Query: 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCL 312
VD ++ ++K ++ +T L+ A G I P++++ + T +HVD
Sbjct: 121 VDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQ 180
Query: 313 GGFVLPFA 320
+PF+
Sbjct: 181 TIGKIPFS 188
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 223 GITRPE--MIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGS 280
+T PE +++P A+ +Y AA+ +++ + +P+ ++ AD+KA+ + + R +++ +
Sbjct: 106 ALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLN 165
Query: 281 APGFPHGIIDP---IQELGELALSHGTCLHVD 309
P P G + +E LA HG L D
Sbjct: 166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHD 197
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 46/232 (19%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM----- 229
+++ + A L K GG + G+ +E+ L+A+ ++R + ++ PE+
Sbjct: 124 KMLELPKAFLNEKAGEGGGVIQGS----ASEATLVALLAARTKVIHRLQAASPELTQAAI 179
Query: 230 ---IIPVS---AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPG 283
++ S AHS+ ++A +KL +P D F A+++ + R+ G P
Sbjct: 180 MEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA--AGLIPF 237
Query: 284 FPHGII--------DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ 335
F + D + E+G + LHVD G + P F +
Sbjct: 238 FMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAG--------SAFICPEFRHLLN 289
Query: 336 GV---TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384
GV S + + H + L S + + R T+ +G + PT
Sbjct: 290 GVEFADSFNFNPHXWLLVNFDCSAMWVKKR----------TDLTGAFRLDPT 331
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 25/201 (12%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF 259
TSG TES LA+K + ++ + K+G +I + H A + + + V
Sbjct: 72 TSGATESDNLAIKGAANFYQ-KKG---KHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ 127
Query: 260 RA---DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
R D+K ++ + +T+L+ G++ I +GE+ + G HVD
Sbjct: 128 RNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQS--- 184
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKHQFVAVTEW 375
KL P D S V +S HK YG PKG + R RK + +
Sbjct: 185 ---VGKL-----PIDLSQLKVDLMSFSGHKIYG--PKGIGALYVR----RKPRVRIEAQM 230
Query: 376 SGGLYVSPTVAGSRPGGLIAG 396
GG + +G+ P I G
Sbjct: 231 HGGGHERGMRSGTLPVHQIVG 251
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF 259
TSG TES LA+K + ++ + K +I + H A + + + V
Sbjct: 91 TSGATESDNLAIKGAANFYQKK----GKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ 146
Query: 260 RA---DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
R D+K ++ + +T+L+ G++ I +GE+ + G HVD
Sbjct: 147 RNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQS--- 203
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKHQFVAVTEW 375
KL P D S V +S HK YG PKG + R RK + +
Sbjct: 204 ---VGKL-----PIDLSQLKVDLMSFSGHKIYG--PKGIGALYVR----RKPRVRIEAQM 249
Query: 376 SGGLYVSPTVAGSRPGGLIAG 396
GG + +G+ P I G
Sbjct: 250 HGGGHERGMRSGTLPVHQIVG 270
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
+TSG +++I L + + +N ++IP S Y A+ I KL+ + +
Sbjct: 100 LTSGCSQAIELCLAVLANPGQN--------ILIPRPGFSLYRTLAESMGIEVKLYNLLPE 151
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE-LALSHGTCLHV 308
K + D+K ++ I+ T +V + P P G + + L + LA++ C+ +
Sbjct: 152 KSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPI 204
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 29/165 (17%)
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR----NKRGI-TR 226
E EV+ AL+G +SG G GG+ S + AV +R Y R +RG+ T
Sbjct: 149 MEEEVLRKLRALVG---WSSGD---GIFCPGGSISNMYAVNLAR-YQRYPDCKQRGLRTL 201
Query: 227 PEMIIPVS--AHSAYDKAAQYFNIKLWRVPVDKEFRADV--KAIKKYINRNT-------- 274
P + + S H + K A + + V V K AD K + + + R
Sbjct: 202 PPLALFTSKECHYSIQKGAAFLGLGTDSVRVVK---ADERGKMVPEDLERQIGMAEAEGA 258
Query: 275 --VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317
L+ ++ G DP++ + ++ HG LHVD GG VL
Sbjct: 259 VPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL 303
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317
+G DPIQE+ ++ + LHVD GG +L
Sbjct: 261 YGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 292
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317
+G DPIQE+ ++ + LHVD GG +L
Sbjct: 258 YGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 289
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTV------LIVGSAPGFPHGI 288
AHS+ ++A +KL +P D +F A+++ + R+ +V +
Sbjct: 191 AHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCS 250
Query: 289 IDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV---TSISVDVH 345
D + E+G + LHVD G + P F + GV S + + H
Sbjct: 251 FDNLLEVGPICHEEDIWLHVDAAYAG--------SAFICPEFRHLLNGVEFADSFNFNPH 302
Query: 346 KYGLAPKGTSVVLYRNR 362
K+ L S + + R
Sbjct: 303 KWLLVNFDCSAMWVKRR 319
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 67 IKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDVVW 126
I VP + KY A++ ++ + G+K REGW++ P EK+ E V
Sbjct: 26 IAAVPELAKYW-AQRYRLFSRFDDGIKLDREGWFSVTP---------EKIAEHIAGRVSQ 75
Query: 127 QGKCSGTV 134
KC V
Sbjct: 76 SFKCDVVV 83
>pdb|1XKP|C Chain C, Crystal Structure Of The Virulence Factor Yopn In Complex
With Its Heterodimeric Chaperone Sycn-Yscb
Length = 143
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVL 358
PF QGV +++D H LAP G+ +VL
Sbjct: 16 PFVADXQGVYRLTIDXHLVMLAPHGSELVL 45
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 20/184 (10%)
Query: 254 PVDKEFRADV--KAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311
P D+ F + +AI+ + + L G + G++ P++ +G++ H L VD
Sbjct: 125 PPDRPFSLETLARAIELHQPKCLFLTHGDSSS---GLLQPLEGVGQICHQHDCLLIVDAV 181
Query: 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371
+PF + I Q V + ++PK V+ RNR + F
Sbjct: 182 ASLCGVPFYMD-KWEIDAVYTGAQKVLGAPPGITPISISPKALDVI--RNRRTKSKVFYW 238
Query: 372 VTEWSG---GLYVSP-----TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESI 423
G G Y P TVA + LI AL + +EG K +E ++ +
Sbjct: 239 DLLLLGNYWGCYDEPKRYHHTVASN----LIFALREALAQIAEEGLENQIKRRIECAQIL 294
Query: 424 QKGL 427
+GL
Sbjct: 295 YEGL 298
>pdb|1QOX|A Chain A, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|B Chain B, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|C Chain C, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|D Chain D, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|E Chain E, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|F Chain F, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|G Chain G, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|H Chain H, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|I Chain I, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|J Chain J, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|K Chain K, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|L Chain L, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|M Chain M, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|N Chain N, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|O Chain O, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
pdb|1QOX|P Chain P, Beta-Glucosidase From Bacillus Circulans Sp. Alkalophilus
Length = 449
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 348 GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390
G+AP + V YR + + V WSG Y+ P G P
Sbjct: 217 GIAPNTSWAVPYRRTKEDMEACLRVNGWSGDWYLDPIYFGEYP 259
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
+TSG +++I L + + +N +++P S Y A+ I KL+ + +
Sbjct: 123 LTSGCSQAIDLCLAVLANPGQN--------ILVPRPGFSLYKTLAESMGIEVKLYNLLPE 174
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHG 287
K + D+K ++ I+ T ++ + P P G
Sbjct: 175 KSWEIDLKQLEYLIDEKTACLIVNNPSNPCG 205
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313
PVD E A +A+K+ R L+ G G+++P + +G LA G +D
Sbjct: 110 PVDPE--AVARALKRRRYRMVALVHGETS---TGVLNPAEAIGALAKEAGALFFLDAVTT 164
Query: 314 GFVLPFAKK 322
+LPF+ +
Sbjct: 165 LGMLPFSMR 173
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 9/165 (5%)
Query: 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTE 205
L EA +FA +P +Q + + M LG KA G + + G
Sbjct: 82 LHEEAARLFADLHP-----YQDPRTAQGALRLMWE--LGEYLKALTGMDAITLEPAAGAH 134
Query: 206 SILLAVKSSRDYMRNK-RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVK 264
L + R Y ++ G TR +++P SAH + A ++ +P E D++
Sbjct: 135 GELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLE 194
Query: 265 AIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
A+K+ + + ++ + P I E+ L G L+ D
Sbjct: 195 ALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYD 239
>pdb|3JTW|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
pdb|3JTW|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
Length = 178
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 68 KLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKLKEEKGKDV 124
KL P KY+ A++Q + G + + +W + P V +++++++EKGKDV
Sbjct: 64 KLSP--EKYVYADRQTYIVTSHLGEDTDKIKYWKQSP-----VELVKRIQKEKGKDV 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,206,530
Number of Sequences: 62578
Number of extensions: 509750
Number of successful extensions: 1170
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 45
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)