Query 013675
Match_columns 438
No_of_seqs 442 out of 2895
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1383 Glutamate decarboxylas 100.0 8.4E-62 1.8E-66 468.3 31.1 370 51-435 2-378 (491)
2 COG0076 GadB Glutamate decarbo 100.0 6.8E-51 1.5E-55 411.8 32.5 327 97-436 27-367 (460)
3 PF00282 Pyridoxal_deC: Pyrido 100.0 8.8E-51 1.9E-55 404.4 27.5 328 97-436 6-360 (373)
4 PLN02590 probable tyrosine dec 100.0 7.1E-49 1.5E-53 403.3 29.9 327 97-436 97-453 (539)
5 TIGR01788 Glu-decarb-GAD gluta 100.0 7.1E-47 1.5E-51 381.8 33.2 324 98-435 12-350 (431)
6 PLN02880 tyrosine decarboxylas 100.0 5.7E-46 1.2E-50 381.7 29.9 325 98-436 50-405 (490)
7 PLN02263 serine decarboxylase 100.0 5.4E-45 1.2E-49 365.8 30.8 295 110-434 76-384 (470)
8 TIGR03799 NOD_PanD_pyr putativ 100.0 9.9E-44 2.2E-48 365.8 32.8 322 100-435 59-424 (522)
9 TIGR03811 tyr_de_CO2_Ent tyros 100.0 8.9E-43 1.9E-47 361.4 33.7 319 101-430 53-475 (608)
10 PLN03032 serine decarboxylase; 100.0 6.3E-43 1.4E-47 346.2 29.1 263 152-434 43-317 (374)
11 PRK02769 histidine decarboxyla 100.0 4E-42 8.7E-47 342.8 29.3 258 158-435 48-315 (380)
12 KOG0629 Glutamate decarboxylas 100.0 2.1E-37 4.5E-42 295.3 15.7 332 83-435 57-418 (510)
13 KOG0628 Aromatic-L-amino-acid/ 100.0 1.3E-34 2.8E-39 279.2 22.9 349 72-436 16-399 (511)
14 PRK13520 L-tyrosine decarboxyl 100.0 3.1E-33 6.6E-38 280.1 30.0 303 108-434 2-305 (371)
15 TIGR03812 tyr_de_CO2_Arch tyro 100.0 1.6E-31 3.4E-36 268.0 32.8 304 110-431 3-308 (373)
16 cd06450 DOPA_deC_like DOPA dec 100.0 1.2E-32 2.7E-37 273.0 22.0 248 144-435 11-272 (345)
17 COG1104 NifS Cysteine sulfinat 100.0 8.3E-32 1.8E-36 261.0 26.0 246 158-435 30-285 (386)
18 COG0520 csdA Selenocysteine ly 100.0 6.7E-31 1.4E-35 263.3 27.8 265 144-435 38-324 (405)
19 PRK04366 glycine dehydrogenase 100.0 3.9E-29 8.4E-34 257.8 31.3 306 98-430 41-368 (481)
20 PLN02651 cysteine desulfurase 100.0 6.8E-29 1.5E-33 248.3 27.8 243 166-435 38-284 (364)
21 TIGR00461 gcvP glycine dehydro 100.0 2.1E-28 4.5E-33 262.1 32.3 301 108-430 466-785 (939)
22 TIGR03531 selenium_SpcS O-phos 100.0 4.9E-29 1.1E-33 251.0 25.7 289 99-430 26-344 (444)
23 PRK00451 glycine dehydrogenase 100.0 5.8E-28 1.3E-32 248.0 28.3 321 83-435 22-376 (447)
24 PRK05367 glycine dehydrogenase 100.0 5.8E-27 1.3E-31 255.1 30.6 297 107-430 477-793 (954)
25 TIGR02006 IscS cysteine desulf 100.0 4.7E-27 1E-31 238.1 27.7 239 170-435 46-287 (402)
26 TIGR03235 DNA_S_dndA cysteine 100.0 8.9E-27 1.9E-31 232.0 27.4 244 167-435 38-284 (353)
27 PRK09295 bifunctional cysteine 100.0 4.5E-27 9.6E-32 238.6 25.7 244 165-435 61-325 (406)
28 TIGR01977 am_tr_V_EF2568 cyste 100.0 1E-26 2.2E-31 233.4 27.5 240 169-435 42-294 (376)
29 TIGR03392 FeS_syn_CsdA cystein 100.0 1.1E-26 2.5E-31 235.0 25.6 244 165-435 54-317 (398)
30 cd06453 SufS_like Cysteine des 100.0 1.6E-26 3.6E-31 231.7 26.6 248 164-435 36-299 (373)
31 TIGR03402 FeS_nifS cysteine de 100.0 2.1E-26 4.6E-31 231.5 27.0 240 166-435 37-280 (379)
32 PRK10874 cysteine sulfinate de 100.0 2.1E-26 4.6E-31 233.3 26.6 243 166-435 58-320 (401)
33 KOG1549 Cysteine desulfurase N 100.0 1E-26 2.2E-31 226.3 22.2 257 145-427 60-319 (428)
34 TIGR01979 sufS cysteine desulf 99.9 4.4E-26 9.5E-31 231.0 26.7 247 166-435 57-319 (403)
35 PF00266 Aminotran_5: Aminotra 99.9 3.4E-26 7.4E-31 229.3 25.5 249 163-435 35-299 (371)
36 PLN02414 glycine dehydrogenase 99.9 1.9E-25 4.2E-30 242.2 30.7 303 98-430 492-825 (993)
37 TIGR03403 nifS_epsilon cystein 99.9 1.8E-25 4E-30 224.9 28.4 237 172-435 43-283 (382)
38 PRK14012 cysteine desulfurase; 99.9 1.5E-25 3.3E-30 227.2 27.6 238 171-435 49-289 (404)
39 PLN02855 Bifunctional selenocy 99.9 1.1E-25 2.3E-30 229.7 26.0 246 167-435 72-333 (424)
40 PRK02948 cysteine desulfurase; 99.9 1.6E-24 3.4E-29 218.1 27.9 237 165-430 37-276 (381)
41 PRK12566 glycine dehydrogenase 99.9 2.2E-24 4.9E-29 229.8 28.4 309 99-430 468-794 (954)
42 PF02347 GDC-P: Glycine cleava 99.9 2.6E-24 5.5E-29 213.4 26.5 321 73-430 11-364 (429)
43 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.9E-24 4.1E-29 218.6 26.2 246 165-435 54-318 (397)
44 cd06451 AGAT_like Alanine-glyo 99.9 1.8E-24 4E-29 215.5 23.4 245 165-435 26-282 (356)
45 PLN02409 serine--glyoxylate am 99.9 1.7E-24 3.6E-29 219.1 23.3 246 165-435 36-296 (401)
46 cd00613 GDC-P Glycine cleavage 99.9 9.6E-24 2.1E-28 213.5 27.8 294 111-433 3-330 (398)
47 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 9.1E-24 2E-28 212.9 26.0 232 171-435 63-304 (387)
48 TIGR01814 kynureninase kynuren 99.9 1.8E-23 3.9E-28 212.2 24.6 234 171-430 71-328 (406)
49 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 3E-23 6.5E-28 207.3 24.0 230 173-435 46-285 (361)
50 PRK05367 glycine dehydrogenase 99.9 8.6E-23 1.9E-27 222.6 28.5 325 75-435 24-377 (954)
51 TIGR02326 transamin_PhnW 2-ami 99.9 4.8E-23 1E-27 205.9 23.6 243 167-434 31-286 (363)
52 COG1003 GcvP Glycine cleavage 99.9 2.1E-22 4.4E-27 194.0 25.6 305 102-429 39-363 (496)
53 COG0075 Serine-pyruvate aminot 99.9 1.3E-22 2.9E-27 198.4 24.4 247 164-435 31-288 (383)
54 COG0403 GcvP Glycine cleavage 99.9 3.1E-22 6.8E-27 193.0 24.1 332 72-435 18-384 (450)
55 PLN02414 glycine dehydrogenase 99.9 1.1E-21 2.5E-26 213.0 26.7 332 68-435 38-405 (993)
56 TIGR00461 gcvP glycine dehydro 99.9 2.2E-21 4.8E-26 208.3 28.2 327 73-435 10-365 (939)
57 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 1.4E-21 3.1E-26 194.3 23.4 243 168-434 28-281 (355)
58 PRK13479 2-aminoethylphosphona 99.9 1.9E-21 4.2E-26 194.7 23.0 244 167-435 33-288 (368)
59 cd00615 Orn_deC_like Ornithine 99.9 7.4E-22 1.6E-26 191.6 18.4 227 172-429 60-294 (294)
60 PLN02724 Molybdenum cofactor s 99.9 2.6E-21 5.6E-26 210.9 23.0 249 157-431 63-360 (805)
61 PRK12566 glycine dehydrogenase 99.9 1.3E-20 2.9E-25 201.2 27.2 325 73-436 25-380 (954)
62 PTZ00094 serine hydroxymethylt 99.9 8.7E-21 1.9E-25 194.8 23.3 237 167-435 76-326 (452)
63 COG0436 Aspartate/tyrosine/aro 99.9 2E-20 4.4E-25 187.9 25.2 247 162-436 60-318 (393)
64 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 6E-20 1.3E-24 184.1 26.4 230 172-434 52-290 (370)
65 PRK08134 O-acetylhomoserine am 99.8 1.3E-19 2.7E-24 184.2 23.5 227 173-438 66-321 (433)
66 TIGR01437 selA_rel uncharacter 99.8 9.7E-20 2.1E-24 181.8 21.7 228 169-435 43-287 (363)
67 KOG0257 Kynurenine aminotransf 99.8 4.4E-19 9.5E-24 171.1 23.5 295 110-435 17-330 (420)
68 PRK06108 aspartate aminotransf 99.8 4.6E-19 1E-23 178.3 25.0 257 149-435 43-310 (382)
69 PRK08361 aspartate aminotransf 99.8 3E-19 6.6E-24 180.3 23.6 241 161-435 64-317 (391)
70 PRK05957 aspartate aminotransf 99.8 8.3E-19 1.8E-23 177.0 26.0 240 161-433 59-309 (389)
71 cd00609 AAT_like Aspartate ami 99.8 5.7E-19 1.2E-23 174.6 24.2 253 155-434 24-282 (350)
72 PRK03080 phosphoserine aminotr 99.8 1.4E-19 3E-24 181.8 19.1 236 165-435 42-296 (378)
73 PRK08776 cystathionine gamma-s 99.8 3.6E-19 7.8E-24 179.7 22.0 217 174-438 63-285 (405)
74 PRK11658 UDP-4-amino-4-deoxy-L 99.8 7.1E-19 1.5E-23 176.7 23.5 233 166-432 32-276 (379)
75 TIGR01329 cysta_beta_ly_E cyst 99.8 3.3E-19 7.2E-24 178.8 20.9 216 173-437 49-270 (378)
76 PRK08133 O-succinylhomoserine 99.8 3.7E-19 8.1E-24 179.1 21.3 216 173-438 63-285 (390)
77 PRK08861 cystathionine gamma-s 99.8 3.3E-19 7.2E-24 178.7 20.7 221 166-438 52-278 (388)
78 PRK05764 aspartate aminotransf 99.8 1.3E-18 2.9E-23 175.7 25.0 243 162-435 63-316 (393)
79 cd06454 KBL_like KBL_like; thi 99.8 6.7E-19 1.5E-23 174.7 21.6 262 131-430 7-273 (349)
80 PRK05613 O-acetylhomoserine am 99.8 4.2E-19 9.2E-24 180.3 20.4 229 173-438 71-330 (437)
81 cd00611 PSAT_like Phosphoserin 99.8 7.8E-20 1.7E-24 182.1 14.6 236 167-433 40-281 (355)
82 KOG2862 Alanine-glyoxylate ami 99.8 1.1E-18 2.3E-23 161.6 20.9 247 163-434 42-304 (385)
83 PRK07811 cystathionine gamma-s 99.8 7.6E-19 1.6E-23 176.8 21.7 216 175-438 65-286 (388)
84 COG0399 WecE Predicted pyridox 99.8 1.9E-18 4E-23 169.6 23.7 234 166-436 33-274 (374)
85 PRK08064 cystathionine beta-ly 99.8 8E-19 1.7E-23 176.7 21.2 214 174-436 57-276 (390)
86 PLN02271 serine hydroxymethylt 99.8 2E-18 4.4E-23 175.2 23.7 246 164-435 187-458 (586)
87 PLN02509 cystathionine beta-ly 99.8 9.6E-19 2.1E-23 178.3 21.5 218 172-438 134-357 (464)
88 PRK07050 cystathionine beta-ly 99.8 6.9E-19 1.5E-23 177.3 20.2 215 175-437 69-289 (394)
89 PRK09028 cystathionine beta-ly 99.8 5.9E-19 1.3E-23 176.8 19.5 220 166-438 60-285 (394)
90 TIGR01328 met_gam_lyase methio 99.8 5E-19 1.1E-23 178.2 19.0 216 175-438 63-285 (391)
91 PRK07504 O-succinylhomoserine 99.8 7.8E-19 1.7E-23 177.2 20.3 217 175-438 69-290 (398)
92 PRK08574 cystathionine gamma-s 99.8 7.7E-19 1.7E-23 176.4 20.0 220 166-438 52-277 (385)
93 cd06502 TA_like Low-specificit 99.8 3.4E-19 7.4E-24 176.1 17.2 224 172-431 33-268 (338)
94 PF01276 OKR_DC_1: Orn/Lys/Arg 99.8 1.8E-19 3.9E-24 179.1 14.8 232 172-435 67-325 (417)
95 cd00616 AHBA_syn 3-amino-5-hyd 99.8 1.9E-18 4.1E-23 171.8 22.2 233 173-436 20-257 (352)
96 PRK08045 cystathionine gamma-s 99.8 1.2E-18 2.6E-23 175.0 20.9 216 175-438 56-277 (386)
97 cd00614 CGS_like CGS_like: Cys 99.8 1.7E-18 3.7E-23 173.4 21.8 219 166-436 39-263 (369)
98 PRK08248 O-acetylhomoserine am 99.8 1.8E-18 4E-23 175.7 22.0 232 166-438 63-321 (431)
99 PRK07503 methionine gamma-lyas 99.8 1.1E-18 2.4E-23 176.3 20.0 217 175-438 69-291 (403)
100 TIGR01325 O_suc_HS_sulf O-succ 99.8 2.6E-18 5.6E-23 172.6 22.2 216 174-438 57-278 (380)
101 PLN02721 threonine aldolase 99.8 1.5E-18 3.3E-23 172.5 20.3 225 175-435 44-282 (353)
102 PRK08249 cystathionine gamma-s 99.8 2E-18 4.3E-23 174.1 21.0 217 174-438 67-288 (398)
103 cd00378 SHMT Serine-glycine hy 99.8 4.9E-18 1.1E-22 172.1 23.8 235 165-435 59-302 (402)
104 PRK06767 methionine gamma-lyas 99.8 1.5E-18 3.2E-23 174.8 19.8 221 166-438 60-286 (386)
105 PRK07671 cystathionine beta-ly 99.8 3E-18 6.4E-23 171.8 21.6 217 173-438 52-274 (377)
106 PRK08114 cystathionine beta-ly 99.8 1.2E-18 2.6E-23 174.1 18.5 222 164-438 59-288 (395)
107 TIGR02080 O_succ_thio_ly O-suc 99.8 3E-18 6.5E-23 172.0 21.4 216 175-438 55-276 (382)
108 cd01494 AAT_I Aspartate aminot 99.8 1.2E-18 2.5E-23 154.0 16.4 164 174-360 3-170 (170)
109 PRK07810 O-succinylhomoserine 99.8 2.8E-18 6E-23 173.3 21.1 215 175-438 74-295 (403)
110 TIGR01324 cysta_beta_ly_B cyst 99.8 3.6E-18 7.7E-23 170.9 21.6 220 166-438 49-274 (377)
111 PRK06207 aspartate aminotransf 99.8 1.4E-17 3.1E-22 168.9 26.0 243 162-435 73-329 (405)
112 PRK00011 glyA serine hydroxyme 99.8 4.6E-18 9.9E-23 173.2 22.5 233 167-435 67-306 (416)
113 PRK07179 hypothetical protein; 99.8 6.7E-18 1.4E-22 171.4 23.3 223 173-434 101-325 (407)
114 PRK06225 aspartate aminotransf 99.8 6E-18 1.3E-22 170.2 22.6 225 174-434 69-301 (380)
115 PRK05968 hypothetical protein; 99.8 3.3E-18 7.1E-23 172.3 20.6 215 174-437 66-286 (389)
116 PRK07812 O-acetylhomoserine am 99.8 4.9E-18 1.1E-22 172.5 22.0 232 166-438 68-325 (436)
117 PLN00145 tyrosine/nicotianamin 99.8 1.2E-17 2.6E-22 170.5 24.8 242 163-435 90-348 (430)
118 PLN00175 aminotransferase fami 99.8 1.7E-17 3.8E-22 168.5 25.9 254 149-434 73-335 (413)
119 TIGR01364 serC_1 phosphoserine 99.8 1.3E-18 2.8E-23 172.5 17.1 236 164-435 30-275 (349)
120 PRK06234 methionine gamma-lyas 99.8 3.2E-18 7E-23 172.9 20.2 221 165-437 62-291 (400)
121 PLN02368 alanine transaminase 99.8 1.7E-17 3.7E-22 167.7 25.1 245 160-435 100-382 (407)
122 TIGR03588 PseC UDP-4-keto-6-de 99.8 1.1E-17 2.3E-22 168.4 23.4 227 175-434 33-282 (380)
123 PRK07337 aminotransferase; Val 99.8 1.3E-17 2.8E-22 168.3 23.8 245 150-430 50-306 (388)
124 PRK08912 hypothetical protein; 99.8 2E-17 4.2E-22 166.9 24.9 242 161-434 57-308 (387)
125 PLN02656 tyrosine transaminase 99.8 1.6E-17 3.4E-22 168.8 24.2 254 147-433 52-325 (409)
126 TIGR01141 hisC histidinol-phos 99.8 3.4E-18 7.4E-23 169.7 18.9 225 174-435 57-285 (346)
127 PRK05939 hypothetical protein; 99.8 1.2E-17 2.5E-22 168.3 22.8 233 165-438 45-292 (397)
128 PRK08363 alanine aminotransfer 99.8 1.5E-17 3.2E-22 168.4 23.6 246 163-435 66-320 (398)
129 PRK08960 hypothetical protein; 99.8 3.1E-17 6.7E-22 165.5 25.8 248 150-430 52-308 (387)
130 PRK05994 O-acetylhomoserine am 99.8 1E-17 2.2E-22 170.4 22.2 227 175-438 67-320 (427)
131 TIGR01822 2am3keto_CoA 2-amino 99.8 1.3E-17 2.7E-22 168.6 22.7 229 168-434 80-315 (393)
132 TIGR03537 DapC succinyldiamino 99.8 3.2E-17 6.8E-22 163.2 25.0 243 161-434 30-281 (350)
133 PRK07682 hypothetical protein; 99.8 1.8E-17 3.9E-22 166.7 23.4 242 161-434 51-302 (378)
134 PRK06176 cystathionine gamma-s 99.8 7.2E-18 1.6E-22 169.1 20.3 214 175-437 54-273 (380)
135 PF01041 DegT_DnrJ_EryC1: DegT 99.8 1.1E-17 2.5E-22 167.1 21.6 233 166-435 24-265 (363)
136 COG1168 MalY Bifunctional PLP- 99.8 1.5E-17 3.3E-22 159.0 21.0 260 146-435 41-313 (388)
137 PRK13355 bifunctional HTH-doma 99.8 1.7E-17 3.6E-22 173.4 23.4 242 162-435 180-438 (517)
138 PRK06460 hypothetical protein; 99.8 1.3E-17 2.7E-22 167.3 21.6 215 175-438 49-269 (376)
139 PRK13238 tnaA tryptophanase/L- 99.8 1.2E-17 2.7E-22 170.9 21.9 242 161-435 72-339 (460)
140 PRK12414 putative aminotransfe 99.8 2.1E-17 4.6E-22 166.5 23.3 238 161-434 60-310 (384)
141 PLN02187 rooty/superroot1 99.8 3.9E-17 8.4E-22 168.0 25.6 245 162-433 103-360 (462)
142 PRK07324 transaminase; Validat 99.8 2E-17 4.3E-22 166.0 22.7 238 157-434 52-299 (373)
143 PRK07681 aspartate aminotransf 99.8 4.6E-17 1E-21 164.9 25.6 234 166-434 68-315 (399)
144 PRK05942 aspartate aminotransf 99.8 4.7E-17 1E-21 164.5 25.5 243 161-434 67-319 (394)
145 PRK06702 O-acetylhomoserine am 99.8 2.8E-17 6.1E-22 166.2 23.1 232 166-438 60-318 (432)
146 PRK08247 cystathionine gamma-s 99.8 1.1E-17 2.4E-22 167.3 19.7 213 174-435 55-273 (366)
147 PLN03226 serine hydroxymethylt 99.8 2.5E-17 5.4E-22 169.1 22.8 244 167-435 76-337 (475)
148 TIGR03540 DapC_direct LL-diami 99.8 8.2E-17 1.8E-21 162.2 26.1 243 162-434 62-313 (383)
149 TIGR01326 OAH_OAS_sulfhy OAH/O 99.8 2.8E-17 6E-22 167.1 22.4 227 174-438 60-313 (418)
150 PRK07269 cystathionine gamma-s 99.8 1.5E-17 3.2E-22 165.9 19.9 219 165-438 52-276 (364)
151 PRK05967 cystathionine beta-ly 99.8 1.5E-17 3.3E-22 166.4 19.8 217 173-438 66-288 (395)
152 PRK09276 LL-diaminopimelate am 99.8 1.3E-16 2.9E-21 160.7 26.6 238 163-434 65-315 (385)
153 PRK14807 histidinol-phosphate 99.8 3.1E-17 6.7E-22 163.3 21.6 224 174-435 62-287 (351)
154 PRK09082 methionine aminotrans 99.8 3.6E-17 7.8E-22 165.0 22.3 241 162-434 62-312 (386)
155 PRK07550 hypothetical protein; 99.8 9.4E-17 2E-21 161.9 25.3 241 162-434 62-313 (386)
156 PLN00143 tyrosine/nicotianamin 99.8 3E-16 6.6E-21 159.3 29.0 240 162-433 69-326 (409)
157 PLN02242 methionine gamma-lyas 99.8 1.6E-17 3.5E-22 168.3 19.6 216 166-431 75-298 (418)
158 PTZ00433 tyrosine aminotransfe 99.8 1.1E-16 2.5E-21 162.7 25.9 240 162-434 70-332 (412)
159 PTZ00377 alanine aminotransfer 99.8 6.3E-17 1.4E-21 167.7 24.0 189 160-365 108-322 (481)
160 PRK07309 aromatic amino acid a 99.8 1.1E-16 2.3E-21 161.8 25.0 235 163-430 63-310 (391)
161 TIGR01265 tyr_nico_aTase tyros 99.8 2E-16 4.3E-21 160.4 26.8 246 163-434 69-325 (403)
162 PLN02231 alanine transaminase 99.8 1.5E-16 3.4E-21 165.7 26.4 245 160-435 161-442 (534)
163 PRK06084 O-acetylhomoserine am 99.8 3.5E-17 7.5E-22 166.3 20.6 226 175-438 62-316 (425)
164 PRK05355 3-phosphoserine/phosp 99.8 1.5E-17 3.2E-22 165.8 17.1 235 164-432 41-283 (360)
165 PRK07683 aminotransferase A; V 99.8 2E-16 4.4E-21 159.5 25.2 239 159-430 57-306 (387)
166 TIGR00474 selA seryl-tRNA(sec) 99.8 1.9E-16 4E-21 161.2 24.7 168 173-362 124-303 (454)
167 PRK04311 selenocysteine syntha 99.8 1.4E-16 3.1E-21 162.4 23.9 224 174-431 130-377 (464)
168 PRK07582 cystathionine gamma-l 99.8 4E-17 8.7E-22 163.1 19.3 217 166-438 50-272 (366)
169 PRK07777 aminotransferase; Val 99.8 2E-16 4.3E-21 159.6 24.3 243 161-434 55-308 (387)
170 TIGR01366 serC_3 phosphoserine 99.8 2.6E-17 5.7E-22 164.2 17.5 237 164-435 34-285 (361)
171 PRK15029 arginine decarboxylas 99.8 6.8E-17 1.5E-21 171.6 21.5 231 172-432 206-466 (755)
172 COG1103 Archaea-specific pyrid 99.8 1.4E-16 3E-21 145.0 20.3 233 166-434 60-302 (382)
173 PRK13580 serine hydroxymethylt 99.8 7.9E-17 1.7E-21 163.1 20.9 243 166-435 90-362 (493)
174 PRK09147 succinyldiaminopimela 99.8 2.1E-16 4.5E-21 159.9 24.1 188 161-361 59-261 (396)
175 TIGR01264 tyr_amTase_E tyrosin 99.7 2.9E-16 6.3E-21 159.1 24.6 240 163-434 69-323 (401)
176 PRK06348 aspartate aminotransf 99.7 4.4E-16 9.6E-21 156.9 25.7 240 161-434 60-311 (384)
177 PRK08056 threonine-phosphate d 99.7 7.4E-17 1.6E-21 160.9 19.7 223 174-434 58-287 (356)
178 PRK04870 histidinol-phosphate 99.7 1.1E-16 2.3E-21 159.8 20.7 225 174-435 66-292 (356)
179 PRK06107 aspartate aminotransf 99.7 2.9E-16 6.3E-21 159.2 24.2 242 160-435 63-319 (402)
180 PRK13034 serine hydroxymethylt 99.7 1.7E-16 3.7E-21 161.2 22.5 234 166-435 69-309 (416)
181 KOG0259 Tyrosine aminotransfer 99.7 3.1E-16 6.6E-21 149.2 22.1 246 163-435 99-357 (447)
182 PRK07568 aspartate aminotransf 99.7 5.6E-16 1.2E-20 156.8 25.8 240 163-434 62-312 (397)
183 PRK09105 putative aminotransfe 99.7 1.1E-16 2.4E-21 160.3 20.3 220 173-434 80-305 (370)
184 PRK01688 histidinol-phosphate 99.7 4.6E-17 9.9E-22 162.1 17.1 225 174-434 60-289 (351)
185 PRK08068 transaminase; Reviewe 99.7 7.2E-16 1.6E-20 155.7 25.9 242 162-434 65-316 (389)
186 cd00617 Tnase_like Tryptophana 99.7 4E-16 8.7E-21 157.9 23.4 243 161-434 47-313 (431)
187 PRK06290 aspartate aminotransf 99.7 6.3E-16 1.4E-20 156.9 25.0 235 167-434 81-326 (410)
188 PRK06939 2-amino-3-ketobutyrat 99.7 2E-16 4.4E-21 159.8 21.2 228 166-430 82-316 (397)
189 PRK04635 histidinol-phosphate 99.7 7.3E-17 1.6E-21 160.8 16.8 222 175-434 64-290 (354)
190 PLN03026 histidinol-phosphate 99.7 3E-16 6.6E-21 157.8 21.0 222 175-434 90-314 (380)
191 TIGR02379 ECA_wecE TDP-4-keto- 99.7 6.3E-16 1.4E-20 155.0 22.8 225 173-431 33-272 (376)
192 PRK05958 8-amino-7-oxononanoat 99.7 6.1E-16 1.3E-20 155.6 22.8 226 168-430 81-310 (385)
193 PLN02450 1-aminocyclopropane-1 99.7 1.1E-15 2.4E-20 157.6 25.1 238 163-434 82-350 (468)
194 COG0112 GlyA Glycine/serine hy 99.7 3.6E-16 7.8E-21 150.1 19.8 237 163-436 64-308 (413)
195 PRK07366 succinyldiaminopimela 99.7 1.5E-15 3.3E-20 153.2 25.5 243 161-434 62-315 (388)
196 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.7 7.5E-16 1.6E-20 154.7 23.0 225 172-431 32-271 (375)
197 PRK09265 aminotransferase AlaT 99.7 1.8E-15 3.9E-20 153.5 24.8 181 161-360 66-255 (404)
198 TIGR01825 gly_Cac_T_rel pyrido 99.7 9.4E-16 2E-20 154.4 22.7 233 163-434 70-307 (385)
199 PRK00950 histidinol-phosphate 99.7 4.1E-16 8.9E-21 155.7 19.7 216 174-428 72-291 (361)
200 PRK03158 histidinol-phosphate 99.7 6E-16 1.3E-20 154.5 20.8 219 175-430 68-292 (359)
201 PLN02376 1-aminocyclopropane-1 99.7 3.7E-15 8E-20 154.4 27.2 189 163-366 90-300 (496)
202 TIGR03538 DapC_gpp succinyldia 99.7 1.4E-15 3E-20 153.7 23.4 252 147-430 45-316 (393)
203 PRK08636 aspartate aminotransf 99.7 3.1E-15 6.6E-20 151.8 25.7 241 160-430 64-321 (403)
204 PRK06434 cystathionine gamma-l 99.7 4.1E-16 8.8E-21 156.0 18.8 218 165-438 62-286 (384)
205 PRK05387 histidinol-phosphate 99.7 4.4E-16 9.6E-21 155.0 18.9 220 175-434 64-286 (353)
206 TIGR00858 bioF 8-amino-7-oxono 99.7 1E-15 2.3E-20 152.3 21.6 223 171-430 61-288 (360)
207 PRK05166 histidinol-phosphate 99.7 5.2E-16 1.1E-20 155.7 19.5 224 175-434 75-305 (371)
208 PRK03321 putative aminotransfe 99.7 4.1E-16 8.9E-21 155.2 18.3 222 174-430 60-286 (352)
209 PRK02731 histidinol-phosphate 99.7 8.6E-16 1.9E-20 153.8 20.6 223 175-434 71-298 (367)
210 COG2008 GLY1 Threonine aldolas 99.7 2.6E-16 5.6E-21 150.2 15.7 228 172-436 36-277 (342)
211 PRK15407 lipopolysaccharide bi 99.7 2E-15 4.3E-20 154.0 23.4 230 175-432 67-330 (438)
212 PRK06358 threonine-phosphate d 99.7 9.4E-16 2E-20 152.8 20.3 224 174-434 57-288 (354)
213 PRK13578 ornithine decarboxyla 99.7 5.3E-16 1.1E-20 163.4 19.1 235 173-435 176-444 (720)
214 PF01053 Cys_Met_Meta_PP: Cys/ 99.7 1E-15 2.2E-20 152.8 20.2 220 165-437 53-281 (386)
215 PRK06855 aminotransferase; Val 99.7 3.9E-15 8.4E-20 152.3 24.7 243 161-434 67-329 (433)
216 PRK15481 transcriptional regul 99.7 2.4E-15 5.2E-20 153.9 22.4 231 166-434 120-359 (431)
217 COG2873 MET17 O-acetylhomoseri 99.7 3.2E-15 7E-20 142.2 21.4 237 164-438 59-319 (426)
218 PF00464 SHMT: Serine hydroxym 99.7 1.4E-15 3E-20 150.8 18.9 237 166-435 61-323 (399)
219 PRK09148 aminotransferase; Val 99.7 1.1E-14 2.4E-19 147.7 25.9 234 162-430 63-311 (405)
220 PRK07049 methionine gamma-lyas 99.7 4.4E-15 9.6E-20 151.1 22.4 220 167-438 83-319 (427)
221 TIGR01140 L_thr_O3P_dcar L-thr 99.7 2E-15 4.4E-20 149.0 19.3 213 174-434 50-268 (330)
222 PLN02607 1-aminocyclopropane-1 99.7 1.2E-14 2.6E-19 148.8 25.3 186 165-365 93-299 (447)
223 PRK02610 histidinol-phosphate 99.7 5.3E-15 1.1E-19 148.6 22.3 230 167-434 66-308 (374)
224 PRK05937 8-amino-7-oxononanoat 99.7 4.6E-15 1E-19 148.8 21.8 249 144-429 23-283 (370)
225 PRK03317 histidinol-phosphate 99.7 5.6E-15 1.2E-19 148.0 22.0 231 167-434 65-301 (368)
226 PRK08175 aminotransferase; Val 99.7 1.4E-14 2.9E-19 146.7 24.2 243 160-434 60-313 (395)
227 PRK09257 aromatic amino acid a 99.7 1.5E-14 3.3E-19 146.3 24.4 202 146-359 47-260 (396)
228 TIGR02618 tyr_phenol_ly tyrosi 99.7 5E-15 1.1E-19 148.0 20.0 240 163-435 67-332 (450)
229 PRK13392 5-aminolevulinate syn 99.7 1.1E-14 2.4E-19 148.1 22.8 226 173-434 93-322 (410)
230 PRK06836 aspartate aminotransf 99.7 4.5E-15 9.7E-20 150.1 19.8 179 163-361 69-260 (394)
231 PLN02822 serine palmitoyltrans 99.7 6.8E-15 1.5E-19 151.9 21.4 259 144-435 128-392 (481)
232 COG0079 HisC Histidinol-phosph 99.7 8.2E-15 1.8E-19 145.0 21.1 219 174-431 60-283 (356)
233 TIGR01365 serC_2 phosphoserine 99.7 2.9E-15 6.2E-20 149.0 17.6 242 163-435 31-287 (374)
234 PF00155 Aminotran_1_2: Aminot 99.7 1E-14 2.3E-19 145.5 21.6 243 161-434 38-298 (363)
235 PRK01533 histidinol-phosphate 99.7 5.7E-15 1.2E-19 147.8 19.1 222 175-434 68-295 (366)
236 KOG2040 Glycine dehydrogenase 99.6 7.8E-15 1.7E-19 147.2 19.2 303 105-430 515-836 (1001)
237 PTZ00376 aspartate aminotransf 99.6 2.8E-14 6.1E-19 144.8 23.8 209 145-363 49-271 (404)
238 PRK07908 hypothetical protein; 99.6 9.6E-15 2.1E-19 145.3 19.6 216 175-434 62-279 (349)
239 KOG1368 Threonine aldolase [Am 99.6 1.4E-15 2.9E-20 140.4 12.1 234 163-436 52-300 (384)
240 TIGR01821 5aminolev_synth 5-am 99.6 3.5E-14 7.5E-19 144.0 23.8 227 171-434 90-321 (402)
241 PRK03967 histidinol-phosphate 99.6 3.3E-14 7.1E-19 140.8 22.6 214 175-430 59-274 (337)
242 PRK15399 lysine decarboxylase 99.6 1.9E-14 4.2E-19 151.5 21.9 226 173-432 197-444 (713)
243 PRK15400 lysine decarboxylase 99.6 5.9E-15 1.3E-19 155.4 17.7 228 173-432 197-444 (714)
244 COG3844 Kynureninase [Amino ac 99.6 6.8E-15 1.5E-19 137.5 15.6 237 165-430 70-325 (407)
245 PRK04781 histidinol-phosphate 99.6 3.2E-14 7E-19 142.3 21.3 224 174-433 62-295 (364)
246 PLN02483 serine palmitoyltrans 99.6 4.4E-14 9.4E-19 146.3 22.6 254 144-434 120-391 (489)
247 PRK07590 L,L-diaminopimelate a 99.6 1.1E-13 2.5E-18 140.6 25.3 231 161-430 70-335 (409)
248 PRK09064 5-aminolevulinate syn 99.6 5.9E-14 1.3E-18 142.5 23.0 228 170-434 90-322 (407)
249 COG0626 MetC Cystathionine bet 99.6 3.8E-14 8.3E-19 140.1 20.6 222 166-438 62-290 (396)
250 PRK07392 threonine-phosphate d 99.6 5.3E-14 1.1E-18 140.6 21.9 223 175-435 61-291 (360)
251 PRK08153 histidinol-phosphate 99.6 4.7E-14 1E-18 141.4 21.6 218 175-430 71-293 (369)
252 PRK05839 hypothetical protein; 99.6 7.2E-14 1.6E-18 140.3 22.4 182 162-365 55-251 (374)
253 COG4992 ArgD Ornithine/acetylo 99.6 8.2E-14 1.8E-18 135.8 21.8 219 173-430 86-323 (404)
254 PRK09275 aspartate aminotransf 99.6 3.6E-14 7.9E-19 146.4 20.1 186 163-362 130-328 (527)
255 PRK06425 histidinol-phosphate 99.6 6.2E-14 1.3E-18 138.5 20.7 218 173-434 42-265 (332)
256 TIGR03801 asp_4_decarbox aspar 99.6 5.2E-14 1.1E-18 145.1 20.5 178 170-362 132-327 (521)
257 PLN02452 phosphoserine transam 99.6 2.8E-14 6E-19 141.8 17.3 236 163-433 44-288 (365)
258 PLN02672 methionine S-methyltr 99.6 2.9E-13 6.3E-18 148.3 26.6 239 171-434 734-992 (1082)
259 PLN03227 serine palmitoyltrans 99.6 1.7E-13 3.6E-18 138.4 22.8 221 172-429 44-280 (392)
260 PF01212 Beta_elim_lyase: Beta 99.6 1.3E-15 2.9E-20 146.4 7.2 232 163-433 25-273 (290)
261 PRK13237 tyrosine phenol-lyase 99.6 1.1E-13 2.5E-18 138.7 20.5 237 163-430 74-335 (460)
262 PRK14809 histidinol-phosphate 99.6 1.2E-13 2.6E-18 137.8 20.6 217 175-429 69-291 (357)
263 PRK10534 L-threonine aldolase; 99.6 8.6E-14 1.9E-18 137.4 19.4 228 163-434 30-269 (333)
264 TIGR03576 pyridox_MJ0158 pyrid 99.6 4.4E-13 9.6E-18 132.9 24.1 165 169-366 52-222 (346)
265 PRK13393 5-aminolevulinate syn 99.6 4.5E-13 9.8E-18 136.0 24.7 223 172-430 91-318 (406)
266 PRK08637 hypothetical protein; 99.6 4.6E-13 1E-17 135.1 23.7 201 144-360 21-242 (388)
267 cd00610 OAT_like Acetyl ornith 99.6 1.1E-13 2.3E-18 140.8 18.8 229 170-430 78-332 (413)
268 KOG0053 Cystathionine beta-lya 99.6 1.4E-13 3.1E-18 134.6 18.3 216 175-438 81-302 (409)
269 PRK07865 N-succinyldiaminopime 99.6 3.6E-13 7.7E-18 134.8 21.7 228 162-434 57-298 (364)
270 PRK00854 rocD ornithine--oxo-a 99.6 7.7E-13 1.7E-17 134.1 24.2 220 173-430 85-327 (401)
271 PLN02397 aspartate transaminas 99.6 6.1E-13 1.3E-17 135.7 22.7 257 145-430 68-355 (423)
272 PRK14808 histidinol-phosphate 99.5 7.3E-13 1.6E-17 131.0 22.2 211 176-434 61-275 (335)
273 PRK03244 argD acetylornithine 99.5 7.7E-13 1.7E-17 134.0 22.7 217 174-430 88-322 (398)
274 TIGR03539 DapC_actino succinyl 99.5 6.5E-13 1.4E-17 132.6 21.8 229 163-434 52-292 (357)
275 TIGR03542 DAPAT_plant LL-diami 99.5 1.9E-12 4.1E-17 131.3 24.7 174 163-362 71-263 (402)
276 PRK08354 putative aminotransfe 99.5 1E-12 2.2E-17 128.7 21.8 148 176-359 45-196 (311)
277 PRK09440 avtA valine--pyruvate 99.5 5E-13 1.1E-17 136.2 20.3 186 162-365 69-267 (416)
278 PRK05664 threonine-phosphate d 99.5 1.1E-12 2.5E-17 129.4 21.7 205 175-430 53-262 (330)
279 COG1167 ARO8 Transcriptional r 99.5 1.3E-12 2.7E-17 134.4 22.0 185 160-362 125-315 (459)
280 PRK07505 hypothetical protein; 99.5 1.7E-12 3.7E-17 131.7 20.9 229 169-425 89-320 (402)
281 PRK06959 putative threonine-ph 99.5 2.4E-12 5.3E-17 127.5 21.4 210 174-434 56-271 (339)
282 PRK12462 phosphoserine aminotr 99.5 1.5E-12 3.2E-17 128.5 18.7 237 163-434 41-288 (364)
283 PRK01278 argD acetylornithine 99.5 4.9E-12 1.1E-16 127.7 22.5 172 172-362 74-260 (389)
284 PRK04073 rocD ornithine--oxo-a 99.5 7.5E-12 1.6E-16 126.7 23.7 223 173-430 84-326 (396)
285 TIGR00707 argD acetylornithine 99.5 8.2E-12 1.8E-16 125.5 21.8 229 171-430 69-309 (379)
286 PTZ00125 ornithine aminotransf 99.4 2.3E-11 4.9E-16 123.3 23.5 175 172-362 74-264 (400)
287 KOG0256 1-aminocyclopropane-1- 99.4 8.8E-12 1.9E-16 120.1 18.7 236 166-430 120-378 (471)
288 COG1982 LdcC Arginine/lysine/o 99.4 4.4E-12 9.5E-17 128.9 17.6 233 173-435 72-317 (557)
289 PRK02627 acetylornithine amino 99.4 2.4E-11 5.1E-16 123.0 22.7 176 170-362 80-267 (396)
290 KOG2467 Glycine/serine hydroxy 99.4 2.6E-11 5.6E-16 115.2 20.6 241 169-435 84-344 (477)
291 TIGR03246 arg_catab_astC succi 99.4 3E-11 6.6E-16 122.3 22.2 221 173-430 79-318 (397)
292 COG0156 BioF 7-keto-8-aminopel 99.4 3.3E-11 7.2E-16 119.5 20.8 226 167-429 80-312 (388)
293 PF05889 SLA_LP_auto_ag: Solub 99.4 4.5E-12 9.8E-17 123.6 13.9 233 169-430 54-294 (389)
294 PRK03715 argD acetylornithine 99.4 7E-11 1.5E-15 119.3 23.0 227 170-430 77-317 (395)
295 PLN02955 8-amino-7-oxononanoat 99.3 1.3E-10 2.8E-15 118.0 21.0 251 144-426 121-386 (476)
296 KOG2040 Glycine dehydrogenase 99.3 3.9E-11 8.4E-16 121.0 16.7 316 74-430 65-414 (1001)
297 PLN02624 ornithine-delta-amino 99.3 3E-10 6.6E-15 117.3 24.0 169 172-361 118-309 (474)
298 PRK05093 argD bifunctional N-s 99.3 2.1E-10 4.5E-15 116.4 22.1 221 174-430 85-323 (403)
299 PRK02936 argD acetylornithine 99.3 1.9E-10 4.2E-15 115.6 21.2 167 170-360 70-250 (377)
300 TIGR01885 Orn_aminotrans ornit 99.3 3.8E-10 8.3E-15 114.4 22.4 224 172-430 80-326 (401)
301 COG0160 GabT 4-aminobutyrate a 99.3 1.6E-09 3.4E-14 108.9 23.4 222 173-430 101-360 (447)
302 PRK12381 bifunctional succinyl 99.2 7.6E-10 1.7E-14 112.4 21.1 220 173-430 83-322 (406)
303 TIGR03372 putres_am_tran putre 99.2 1.4E-09 3E-14 111.0 22.6 220 171-429 117-365 (442)
304 PRK05964 adenosylmethionine--8 99.2 1.5E-09 3.2E-14 110.9 22.7 234 171-430 85-346 (423)
305 PRK07482 hypothetical protein; 99.2 1.2E-09 2.6E-14 112.4 22.1 176 170-362 93-306 (461)
306 PRK12403 putative aminotransfe 99.2 2E-09 4.4E-14 110.8 22.7 174 171-361 98-307 (460)
307 PLN02760 4-aminobutyrate:pyruv 99.2 2.6E-09 5.7E-14 110.8 23.5 236 171-430 133-407 (504)
308 KOG0258 Alanine aminotransfera 99.2 2.2E-09 4.7E-14 103.1 20.8 218 70-314 28-259 (475)
309 TIGR02617 tnaA_trp_ase tryptop 99.2 1.5E-10 3.2E-15 115.2 12.9 240 163-430 70-344 (467)
310 COG1921 SelA Selenocysteine sy 99.2 7.2E-10 1.6E-14 108.3 17.0 191 179-406 73-271 (395)
311 PRK11522 putrescine--2-oxoglut 99.2 2.2E-09 4.7E-14 110.3 21.5 221 171-430 124-373 (459)
312 PRK05965 hypothetical protein; 99.2 4.4E-09 9.5E-14 108.3 23.7 234 171-430 90-362 (459)
313 PRK06541 hypothetical protein; 99.2 4.6E-09 1E-13 108.1 23.6 230 171-430 95-365 (460)
314 PRK06058 4-aminobutyrate amino 99.2 4.2E-09 9E-14 108.1 22.4 222 171-430 99-358 (443)
315 PRK04260 acetylornithine amino 99.2 1.9E-09 4.2E-14 108.3 19.4 151 198-362 88-250 (375)
316 COG3977 Alanine-alpha-ketoisov 99.2 8.9E-10 1.9E-14 102.4 14.9 185 160-365 67-267 (417)
317 PRK04612 argD acetylornithine 99.2 7.9E-09 1.7E-13 104.8 23.1 221 173-430 84-326 (408)
318 PRK08117 4-aminobutyrate amino 99.2 3.7E-09 8E-14 108.3 20.9 224 171-430 86-346 (433)
319 PRK06943 adenosylmethionine--8 99.1 8.4E-09 1.8E-13 106.0 22.7 232 172-430 98-368 (453)
320 PF00202 Aminotran_3: Aminotra 99.1 4E-09 8.7E-14 104.4 19.6 175 172-362 60-262 (339)
321 PRK09792 4-aminobutyrate trans 99.1 1E-08 2.2E-13 104.6 22.7 169 172-362 84-283 (421)
322 KOG1402 Ornithine aminotransfe 99.1 7.2E-09 1.6E-13 97.6 19.5 226 171-431 101-348 (427)
323 PRK06105 aminotransferase; Pro 99.1 1E-08 2.3E-13 105.5 22.7 234 171-430 92-365 (460)
324 KOG0634 Aromatic amino acid am 99.1 5.4E-09 1.2E-13 101.9 18.9 244 161-432 94-375 (472)
325 PRK04013 argD acetylornithine/ 99.1 9.3E-09 2E-13 102.5 20.8 160 173-362 68-246 (364)
326 PRK08360 4-aminobutyrate amino 99.1 1.2E-08 2.7E-13 104.5 21.9 223 171-429 84-342 (443)
327 PLN00144 acetylornithine trans 99.1 1.8E-08 3.8E-13 101.5 22.6 169 172-362 58-252 (382)
328 PRK07678 aminotransferase; Val 99.1 1.3E-08 2.8E-13 104.6 21.9 230 172-429 90-358 (451)
329 PRK09221 beta alanine--pyruvat 99.1 2.1E-08 4.7E-13 102.8 23.4 235 172-430 93-365 (445)
330 PRK13360 omega amino acid--pyr 99.1 2.1E-08 4.5E-13 102.8 23.2 236 171-430 89-362 (442)
331 PRK07481 hypothetical protein; 99.1 3.1E-08 6.8E-13 101.7 24.4 235 171-430 86-360 (449)
332 PRK12389 glutamate-1-semialdeh 99.1 1.9E-08 4.1E-13 102.8 22.6 216 172-429 94-340 (428)
333 PRK07030 adenosylmethionine--8 99.1 2.3E-08 5E-13 103.0 22.9 233 171-430 90-362 (466)
334 COG0001 HemL Glutamate-1-semia 99.1 1.7E-08 3.7E-13 99.9 20.8 219 169-429 91-341 (432)
335 PRK07036 hypothetical protein; 99.1 3.7E-08 8.1E-13 101.5 23.9 233 171-430 95-368 (466)
336 TIGR00713 hemL glutamate-1-sem 99.1 9E-09 2E-13 105.2 19.3 160 173-362 90-279 (423)
337 PRK05769 4-aminobutyrate amino 99.1 5.5E-08 1.2E-12 99.7 24.6 221 171-429 97-357 (441)
338 PLN02482 glutamate-1-semialdeh 99.1 1.6E-08 3.5E-13 104.1 20.7 220 171-430 139-387 (474)
339 PRK09264 diaminobutyrate--2-ox 99.0 4.4E-08 9.5E-13 100.1 23.4 175 171-362 82-284 (425)
340 PRK06062 hypothetical protein; 99.0 1.9E-08 4E-13 103.4 20.5 169 171-361 95-299 (451)
341 COG0161 BioA Adenosylmethionin 99.0 1E-08 2.3E-13 102.5 17.9 253 144-429 65-359 (449)
342 PRK07483 hypothetical protein; 99.0 4.1E-08 8.9E-13 100.7 22.7 174 172-362 74-286 (443)
343 PRK08742 adenosylmethionine--8 99.0 3.7E-08 8E-13 101.6 22.3 174 172-362 108-323 (472)
344 PRK07480 putative aminotransfe 99.0 3.3E-08 7.1E-13 101.7 21.8 175 171-362 94-305 (456)
345 PRK08593 4-aminobutyrate amino 99.0 4.3E-08 9.3E-13 100.6 22.5 224 171-429 85-345 (445)
346 TIGR00709 dat 2,4-diaminobutyr 99.0 4.2E-08 9.2E-13 100.6 22.3 223 171-429 82-343 (442)
347 PRK06916 adenosylmethionine--8 99.0 4.2E-08 9.2E-13 101.0 22.0 233 171-430 99-371 (460)
348 PRK05630 adenosylmethionine--8 99.0 3.6E-08 7.8E-13 100.4 21.1 230 172-429 84-346 (422)
349 PRK06917 hypothetical protein; 99.0 4.4E-08 9.5E-13 100.6 21.8 230 171-430 74-344 (447)
350 TIGR02407 ectoine_ectB diamino 99.0 6.1E-08 1.3E-12 98.6 22.6 175 171-362 78-280 (412)
351 PF06838 Met_gamma_lyase: Meth 99.0 1.2E-08 2.5E-13 98.2 15.6 161 179-365 62-242 (403)
352 PRK06938 diaminobutyrate--2-ox 99.0 6.5E-08 1.4E-12 99.7 21.5 222 173-430 108-369 (464)
353 PRK07495 4-aminobutyrate amino 99.0 1E-07 2.2E-12 97.3 22.7 170 172-362 84-283 (425)
354 PRK07986 adenosylmethionine--8 99.0 7.8E-08 1.7E-12 98.1 21.4 233 172-430 87-350 (428)
355 PRK08088 4-aminobutyrate amino 99.0 4.1E-08 9E-13 100.3 19.5 170 174-362 87-284 (425)
356 PRK05639 4-aminobutyrate amino 99.0 9.1E-08 2E-12 98.4 21.8 221 172-429 97-359 (457)
357 PF03841 SelA: L-seryl-tRNA se 99.0 7.9E-10 1.7E-14 107.2 5.8 222 175-430 51-296 (367)
358 PRK00615 glutamate-1-semialdeh 99.0 7.2E-08 1.6E-12 98.4 20.4 224 172-429 94-341 (433)
359 PRK06082 4-aminobutyrate amino 99.0 1.2E-07 2.7E-12 97.5 22.3 222 171-430 113-368 (459)
360 KOG0633 Histidinol phosphate a 98.9 5.4E-09 1.2E-13 95.4 10.4 206 198-434 90-303 (375)
361 TIGR00700 GABAtrnsam 4-aminobu 98.9 1.1E-07 2.4E-12 97.1 21.2 168 173-362 78-282 (420)
362 PRK06173 adenosylmethionine--8 98.9 1.6E-07 3.4E-12 96.0 21.6 233 172-430 88-352 (429)
363 PRK06777 4-aminobutyrate amino 98.9 1.4E-07 3E-12 96.3 21.1 222 173-430 85-337 (421)
364 PRK06918 4-aminobutyrate amino 98.9 1.9E-07 4E-12 96.2 21.9 171 171-362 97-304 (451)
365 PRK00062 glutamate-1-semialdeh 98.9 5.1E-08 1.1E-12 99.7 17.6 224 171-429 90-337 (426)
366 PRK06931 diaminobutyrate--2-ox 98.9 2.1E-07 4.5E-12 95.9 22.1 171 171-361 101-309 (459)
367 KOG1360 5-aminolevulinate synt 98.9 6.7E-08 1.5E-12 93.2 16.4 221 176-430 221-446 (570)
368 KOG3846 L-kynurenine hydrolase 98.9 3.3E-08 7.2E-13 92.3 13.7 238 173-433 113-378 (465)
369 PRK07046 aminotransferase; Val 98.9 3.2E-07 7E-12 94.3 22.5 160 171-362 115-301 (453)
370 KOG1401 Acetylornithine aminot 98.9 1.8E-07 3.8E-12 91.0 18.2 213 198-431 120-353 (433)
371 PRK06149 hypothetical protein; 98.8 4.4E-07 9.4E-12 101.7 22.7 224 171-430 624-885 (972)
372 COG3033 TnaA Tryptophanase [Am 98.8 8.5E-08 1.8E-12 91.5 14.0 170 176-364 84-285 (471)
373 PRK06148 hypothetical protein; 98.8 3.2E-07 6.9E-12 102.9 20.9 224 171-430 663-925 (1013)
374 TIGR00699 GABAtrns_euk 4-amino 98.8 1.3E-06 2.7E-11 89.8 23.1 142 169-316 103-298 (464)
375 TIGR00508 bioA adenosylmethion 98.8 1.1E-06 2.5E-11 89.7 22.6 232 173-430 90-353 (427)
376 KOG1404 Alanine-glyoxylate ami 98.8 1.3E-07 2.8E-12 91.2 13.5 221 175-430 96-352 (442)
377 PRK06209 glutamate-1-semialdeh 98.7 8.7E-07 1.9E-11 90.7 19.5 221 172-429 89-328 (431)
378 PRK08297 L-lysine aminotransfe 98.7 1E-06 2.2E-11 90.4 18.6 139 173-316 94-272 (443)
379 COG1448 TyrB Aspartate/tyrosin 98.7 6.5E-07 1.4E-11 86.7 15.2 220 195-429 95-331 (396)
380 KOG1359 Glycine C-acetyltransf 98.7 7.1E-07 1.5E-11 83.1 14.6 162 167-357 108-273 (417)
381 PLN02974 adenosylmethionine-8- 98.6 4.6E-06 1E-10 90.8 22.6 89 264-362 567-671 (817)
382 KOG1357 Serine palmitoyltransf 98.6 6.1E-07 1.3E-11 88.1 12.9 228 167-430 178-424 (519)
383 TIGR03251 LAT_fam L-lysine 6-t 98.6 4E-06 8.6E-11 85.8 18.6 120 198-317 107-266 (431)
384 COG4100 Cystathionine beta-lya 98.5 3.3E-06 7.1E-11 79.0 14.9 160 179-362 73-251 (416)
385 PF12897 Aminotran_MocR: Alani 98.5 8.3E-06 1.8E-10 79.4 16.7 180 174-364 72-272 (425)
386 KOG0630 Predicted pyridoxal-de 98.4 1.1E-05 2.4E-10 80.0 15.0 194 226-436 231-439 (838)
387 KOG3843 Predicted serine hydro 98.3 2.7E-06 5.8E-11 78.2 7.4 235 168-429 54-295 (432)
388 KOG1358 Serine palmitoyltransf 98.2 3E-05 6.5E-10 75.2 14.0 177 146-347 115-305 (467)
389 COG1932 SerC Phosphoserine ami 98.0 0.00024 5.2E-09 68.8 15.0 235 164-431 43-287 (365)
390 KOG1412 Aspartate aminotransfe 97.4 0.012 2.7E-07 55.8 16.3 210 194-430 99-339 (410)
391 KOG2790 Phosphoserine aminotra 97.3 0.02 4.4E-07 53.7 17.1 261 144-434 19-294 (370)
392 KOG1411 Aspartate aminotransfe 97.3 0.0028 6.1E-08 60.9 11.0 218 195-430 121-359 (427)
393 KOG1403 Predicted alanine-glyo 96.9 0.005 1.1E-07 58.1 8.5 206 198-429 106-350 (452)
394 PLN02994 1-aminocyclopropane-1 96.5 0.022 4.8E-07 49.5 9.4 60 165-238 90-153 (153)
395 PF04864 Alliinase_C: Allinase 96.3 0.0074 1.6E-07 58.4 5.9 171 170-368 46-217 (363)
396 KOG1405 4-aminobutyrate aminot 92.4 1.4 3E-05 43.1 10.5 140 262-429 254-406 (484)
397 TIGR03573 WbuX N-acetyl sugar 70.5 51 0.0011 32.7 11.1 104 196-314 62-171 (343)
398 cd01018 ZntC Metal binding pro 69.1 55 0.0012 31.0 10.7 67 235-309 176-247 (266)
399 PLN03013 cysteine synthase 66.7 37 0.00079 34.8 9.2 75 198-279 179-253 (429)
400 cd01455 vWA_F11C1-5a_type Von 65.2 15 0.00032 33.2 5.4 38 274-311 113-150 (191)
401 COG0296 GlgB 1,4-alpha-glucan 64.6 5.4 0.00012 42.6 2.9 39 277-315 201-239 (628)
402 PF01297 TroA: Periplasmic sol 63.1 1.1E+02 0.0025 28.5 11.5 129 159-306 91-225 (256)
403 COG2102 Predicted ATPases of P 62.9 73 0.0016 29.4 9.4 97 198-307 5-116 (223)
404 COG0031 CysK Cysteine synthase 62.5 26 0.00057 33.9 6.9 75 198-279 66-142 (300)
405 PF02603 Hpr_kinase_N: HPr Ser 61.3 12 0.00026 31.3 3.9 40 264-309 72-111 (127)
406 COG1954 GlpP Glycerol-3-phosph 60.2 15 0.00033 32.3 4.3 47 262-313 12-60 (181)
407 cd01020 TroA_b Metal binding p 60.1 1E+02 0.0022 29.2 10.6 69 235-307 159-236 (264)
408 cd01017 AdcA Metal binding pro 56.2 1.9E+02 0.0041 27.6 12.6 67 234-307 176-247 (282)
409 TIGR00288 conserved hypothetic 54.9 56 0.0012 28.6 7.0 78 228-311 60-137 (160)
410 smart00642 Aamy Alpha-amylase 52.9 13 0.00027 32.8 2.8 29 284-312 64-92 (166)
411 cd01422 MGS Methylglyoxal synt 52.9 1E+02 0.0022 25.1 8.1 60 246-308 44-106 (115)
412 PF13407 Peripla_BP_4: Peripla 52.4 46 0.00099 30.7 6.8 65 239-308 20-85 (257)
413 PLN02556 cysteine synthase/L-3 52.2 1.1E+02 0.0023 30.8 9.6 82 198-286 115-196 (368)
414 PF05368 NmrA: NmrA-like famil 51.8 78 0.0017 28.9 8.2 73 230-308 27-99 (233)
415 PRK14994 SAM-dependent 16S rib 50.9 85 0.0018 30.3 8.4 83 227-313 39-124 (287)
416 TIGR01139 cysK cysteine syntha 50.6 2.2E+02 0.0047 27.4 11.4 52 198-256 61-112 (298)
417 COG1504 Uncharacterized conser 50.5 38 0.00082 27.4 4.8 52 258-311 46-97 (121)
418 COG2185 Sbm Methylmalonyl-CoA 49.9 79 0.0017 27.0 7.0 86 226-318 12-104 (143)
419 PRK12595 bifunctional 3-deoxy- 49.7 2.8E+02 0.0061 27.7 12.3 77 235-315 213-299 (360)
420 TIGR03679 arCOG00187 arCOG0018 48.8 1.5E+02 0.0032 27.2 9.4 95 198-308 2-117 (218)
421 TIGR01536 asn_synth_AEB aspara 48.1 1.5E+02 0.0033 30.5 10.5 127 168-311 234-364 (467)
422 cd01019 ZnuA Zinc binding prot 47.7 2.6E+02 0.0056 26.7 12.3 66 235-307 185-255 (286)
423 PF00128 Alpha-amylase: Alpha 46.3 13 0.00029 35.3 2.1 31 282-312 44-74 (316)
424 PRK05638 threonine synthase; V 45.8 2.4E+02 0.0051 29.0 11.3 51 198-255 116-166 (442)
425 PRK05331 putative phosphate ac 45.1 3.2E+02 0.0069 27.0 12.0 123 196-345 97-231 (334)
426 TIGR01138 cysM cysteine syntha 44.3 1.5E+02 0.0033 28.4 9.1 52 198-256 63-114 (290)
427 TIGR01361 DAHP_synth_Bsub phos 44.1 2.9E+02 0.0062 26.2 13.1 76 236-315 121-206 (260)
428 COG2515 Acd 1-aminocyclopropan 44.0 2.5E+02 0.0054 27.3 10.0 114 198-315 67-192 (323)
429 PRK09441 cytoplasmic alpha-amy 43.7 19 0.0004 37.5 2.8 31 282-312 73-103 (479)
430 PLN02565 cysteine synthase 43.2 82 0.0018 30.9 7.2 52 198-256 71-122 (322)
431 COG1184 GCD2 Translation initi 43.0 3.2E+02 0.007 26.5 11.6 98 198-309 123-227 (301)
432 cd06282 PBP1_GntR_like_2 Ligan 42.6 1.2E+02 0.0027 27.7 8.1 13 242-254 24-36 (266)
433 PRK05234 mgsA methylglyoxal sy 42.5 1.7E+02 0.0037 24.9 8.1 66 243-311 45-114 (142)
434 PRK08329 threonine synthase; V 42.1 1.8E+02 0.0038 28.8 9.4 51 198-255 108-158 (347)
435 cd01994 Alpha_ANH_like_IV This 41.9 2.6E+02 0.0056 25.1 10.0 97 198-307 4-118 (194)
436 PF04309 G3P_antiterm: Glycero 40.6 11 0.00023 33.5 0.4 47 262-313 8-56 (175)
437 PRK09545 znuA high-affinity zi 40.3 3.6E+02 0.0077 26.2 12.1 66 235-307 209-279 (311)
438 PRK11761 cysM cysteine synthas 40.1 2.4E+02 0.0053 27.1 9.8 51 198-255 67-117 (296)
439 TIGR02402 trehalose_TreZ malto 39.8 22 0.00049 37.6 2.7 33 281-313 151-183 (542)
440 PF10087 DUF2325: Uncharacteri 39.6 1.6E+02 0.0035 22.9 7.1 67 236-308 12-80 (97)
441 TIGR00289 conserved hypothetic 39.5 1.7E+02 0.0036 27.1 8.1 101 198-307 5-115 (222)
442 PF01008 IF-2B: Initiation fac 39.4 1.2E+02 0.0025 29.0 7.5 100 198-311 111-218 (282)
443 TIGR02455 TreS_stutzeri trehal 38.4 33 0.00072 36.8 3.6 76 235-311 75-151 (688)
444 cd06448 L-Ser-dehyd Serine deh 37.4 3.3E+02 0.0072 26.5 10.4 51 198-255 55-105 (316)
445 TIGR00290 MJ0570_dom MJ0570-re 37.4 2E+02 0.0043 26.6 8.2 95 198-307 5-115 (223)
446 PLN00011 cysteine synthase 37.3 2.8E+02 0.006 27.1 9.9 51 198-255 73-123 (323)
447 cd06447 D-Ser-dehyd D-Serine d 37.0 3.5E+02 0.0076 27.5 10.7 51 198-255 138-188 (404)
448 TIGR01136 cysKM cysteine synth 36.2 4E+02 0.0086 25.6 11.8 51 198-255 62-112 (299)
449 cd01991 Asn_Synthase_B_C The C 35.2 2.8E+02 0.0062 25.7 9.4 104 196-313 18-126 (269)
450 cd01561 CBS_like CBS_like: Thi 34.8 3.1E+02 0.0068 26.1 9.7 52 198-256 57-108 (291)
451 COG2870 RfaE ADP-heptose synth 34.6 74 0.0016 32.1 5.1 81 229-311 94-179 (467)
452 KOG3974 Predicted sugar kinase 33.9 90 0.0019 29.6 5.3 64 243-311 73-140 (306)
453 PRK12313 glycogen branching en 33.3 34 0.00073 37.0 2.9 33 281-313 211-243 (633)
454 cd06305 PBP1_methylthioribose_ 32.9 1.2E+02 0.0027 27.9 6.5 66 240-310 22-88 (273)
455 PLN03244 alpha-amylase; Provis 32.9 35 0.00076 37.5 2.8 34 280-313 431-464 (872)
456 PLN02356 phosphateglycerate ki 32.6 1.1E+02 0.0025 31.2 6.4 49 200-255 110-158 (423)
457 PRK05402 glycogen branching en 32.4 35 0.00075 37.6 2.8 32 282-313 307-338 (726)
458 KOG1467 Translation initiation 31.9 2.4E+02 0.0052 29.2 8.2 99 198-309 363-467 (556)
459 PF07085 DRTGG: DRTGG domain; 31.8 1.7E+02 0.0036 23.1 6.1 50 248-308 41-90 (105)
460 TIGR00511 ribulose_e2b2 ribose 31.8 4.8E+02 0.011 25.2 11.9 99 198-310 119-224 (301)
461 cd02070 corrinoid_protein_B12- 31.5 3.8E+02 0.0083 24.0 10.8 130 170-311 32-173 (201)
462 PRK06372 translation initiatio 31.4 4.6E+02 0.0099 24.8 13.4 114 169-308 70-190 (253)
463 KOG2865 NADH:ubiquinone oxidor 31.2 3.9E+02 0.0084 26.0 9.0 82 227-311 86-178 (391)
464 cd01137 PsaA Metal binding pro 31.2 1.7E+02 0.0037 28.0 7.1 65 235-306 183-252 (287)
465 TIGR00334 5S_RNA_mat_M5 ribonu 31.1 1E+02 0.0022 27.4 4.9 55 258-317 9-63 (174)
466 TIGR01515 branching_enzym alph 31.1 38 0.00082 36.5 2.8 33 281-313 197-229 (613)
467 PRK08057 cobalt-precorrin-6x r 30.8 49 0.0011 31.2 3.2 87 198-307 6-96 (248)
468 PF12818 Tegument_dsDNA: dsDNA 30.8 4.3E+02 0.0094 25.4 9.6 47 264-310 218-274 (282)
469 cd06309 PBP1_YtfQ_like Peripla 30.5 1.4E+02 0.0031 27.6 6.4 67 239-310 21-88 (273)
470 COG2984 ABC-type uncharacteriz 29.8 4.6E+02 0.01 25.7 9.6 68 239-311 180-247 (322)
471 PF01902 ATP_bind_4: ATP-bindi 29.8 1.8E+02 0.0038 26.8 6.6 96 198-307 5-115 (218)
472 PF00532 Peripla_BP_1: Peripla 29.5 1.6E+02 0.0035 27.9 6.7 75 229-311 6-88 (279)
473 CHL00073 chlN photochlorophyll 29.5 77 0.0017 32.8 4.5 47 262-309 81-134 (457)
474 TIGR00322 diphth2_R diphthamid 29.4 75 0.0016 31.4 4.3 78 258-348 2-83 (332)
475 PF13380 CoA_binding_2: CoA bi 29.3 95 0.0021 25.3 4.3 44 263-313 69-112 (116)
476 TIGR00182 plsX fatty acid/phos 29.1 5.6E+02 0.012 25.1 11.5 120 198-345 87-218 (322)
477 TIGR00196 yjeF_cterm yjeF C-te 29.1 2.9E+02 0.0063 26.0 8.3 62 242-311 66-127 (272)
478 COG3453 Uncharacterized protei 29.1 1.4E+02 0.003 24.8 5.0 71 233-303 44-126 (130)
479 cd01563 Thr-synth_1 Threonine 28.8 5E+02 0.011 25.1 10.1 51 198-255 74-124 (324)
480 PF09419 PGP_phosphatase: Mito 28.3 4.1E+02 0.0089 23.4 8.3 93 207-308 4-111 (168)
481 COG0313 Predicted methyltransf 28.2 1.7E+02 0.0037 28.0 6.2 83 227-313 32-117 (275)
482 PF00265 TK: Thymidine kinase; 28.2 1.5E+02 0.0031 26.3 5.6 101 195-311 6-111 (176)
483 PF06743 FAST_1: FAST kinase-l 27.9 1.3E+02 0.0029 22.1 4.5 44 7-50 19-62 (71)
484 COG1105 FruK Fructose-1-phosph 27.8 1.3E+02 0.0028 29.4 5.5 54 259-312 109-168 (310)
485 COG0352 ThiE Thiamine monophos 27.8 1.5E+02 0.0031 27.3 5.6 49 263-311 24-73 (211)
486 PRK05678 succinyl-CoA syntheta 27.7 1.2E+02 0.0027 29.2 5.5 72 234-313 52-126 (291)
487 PRK00509 argininosuccinate syn 27.7 2.1E+02 0.0046 29.0 7.3 103 197-313 6-119 (399)
488 COG2382 Fes Enterochelin ester 27.7 1.9E+02 0.0042 28.0 6.6 124 169-314 155-278 (299)
489 TIGR02104 pulA_typeI pullulana 27.5 42 0.0009 36.1 2.4 33 281-313 220-252 (605)
490 PF02310 B12-binding: B12 bind 27.5 2.3E+02 0.005 22.6 6.4 68 240-313 21-91 (121)
491 PRK10785 maltodextrin glucosid 27.3 46 0.001 35.7 2.6 28 285-312 221-248 (598)
492 COG0373 HemA Glutamyl-tRNA red 26.9 6.9E+02 0.015 25.5 11.7 114 171-311 160-274 (414)
493 cd06319 PBP1_ABC_sugar_binding 26.9 1.7E+02 0.0036 27.1 6.2 63 240-307 22-84 (277)
494 KOG1465 Translation initiation 26.8 6E+02 0.013 24.8 14.6 97 198-309 166-270 (353)
495 TIGR02634 xylF D-xylose ABC tr 26.8 2E+02 0.0043 27.4 6.8 62 240-306 21-82 (302)
496 TIGR01275 ACC_deam_rel pyridox 26.7 3.3E+02 0.0071 26.3 8.4 54 198-255 59-113 (311)
497 PF02571 CbiJ: Precorrin-6x re 26.7 65 0.0014 30.3 3.3 89 198-307 4-97 (249)
498 PRK10717 cysteine synthase A; 26.5 1.6E+02 0.0035 28.8 6.2 54 192-254 64-117 (330)
499 PLN02672 methionine S-methyltr 26.4 9E+02 0.019 28.2 12.5 157 135-309 394-563 (1082)
500 cd00640 Trp-synth-beta_II Tryp 26.4 2E+02 0.0043 26.6 6.5 85 192-287 50-134 (244)
No 1
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-62 Score=468.26 Aligned_cols=370 Identities=43% Similarity=0.711 Sum_probs=345.7
Q ss_pred hhcChHHHHHHHHHHHhhcCcchhhHHHHHHHHhhhhhccccccc--cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC
Q 013675 51 REKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ 127 (438)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~ 127 (438)
.++|+++|..+.+|++++++|.++.+++++..+..+++...+... .......||++|++ +++++.++++..-+..|.
T Consensus 2 ~~~~l~~r~~~~~f~~l~~~p~v~~~i~~~~~~~k~~~~~~~~~~~~~~~~~~~lP~~gl~~d~v~~~i~~~~~ld~~~~ 81 (491)
T KOG1383|consen 2 HEEGLKKRLSGKVFKLLKKLPFVRVLIEKELNKVKDQLSTFMSRYDRQKMYFFTLPSKGLPKDAVLELINDELMLDGNPR 81 (491)
T ss_pred CchhHHHHhHHHHHHHHhhChHHHHHHHHHHhhhhhhhhhhhhhhhhccceeecCCCCCCCHHHHHHHHHHHhccCCCcc
Confidence 367899999999999999999999999999999999998877654 34557899999999 999999999865444476
Q ss_pred -CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHH
Q 013675 128 -GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTES 206 (438)
Q Consensus 128 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a 206 (438)
++.+|.+|.++.+ +.+++.+.+..+ |+.+++.+|+.++++.++++|++.||+.+.+. ||..|+|||||
T Consensus 82 ~~~vS~~v~~~~~~---~~~l~~~~~~k~---N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~-----~g~~t~G~Ses 150 (491)
T KOG1383|consen 82 LGLASGVVYWGEPE---LDKLIMEAYNKF---NPLHPDEFPVVRKLEAECVNMIANLFNAPSDS-----CGCGTVGGSES 150 (491)
T ss_pred cCeeeEEEecCCcc---hhhHHHHHHhhc---CccCccccchhHHHHHHHHHHHHHHhcCCccc-----cCccccccchH
Confidence 9999999999877 888999988777 99999999999999999999999999999776 99999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCC
Q 013675 207 ILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFP 285 (438)
Q Consensus 207 ~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~ 285 (438)
++++++.++++....+|+++|+++++...|.+++|++++++++++.||+++ ++++|+.++.+.+++||++++++.|++|
T Consensus 151 ~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p 230 (491)
T KOG1383|consen 151 GLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFP 230 (491)
T ss_pred HHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCC
Confidence 999999999988777899999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred CccccCHHHHHHHHHH-cCCeEEEeccccchhhhhhhhcCC-CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc
Q 013675 286 HGIIDPIQELGELALS-HGTCLHVDLCLGGFVLPFAKKLGY-PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363 (438)
Q Consensus 286 tG~iddi~~I~~la~~-~~i~lhVD~a~gg~~~pf~~~~g~-~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~ 363 (438)
+|.+||+++|.++..+ +++++|||+|.|||+.| +++ ..++|||+.+|+.|+++|+||||++|+|+|++++|+++
T Consensus 231 ~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p----~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~ 306 (491)
T KOG1383|consen 231 TGEIEDVEKLADLLLEIWDIPIHVDACLGGFINP----AGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKE 306 (491)
T ss_pred ccchhhHHHHHHHHHHHhCCceeecccCcccccc----ccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccc
Confidence 9999999999999999 99999999999999998 222 12379999999999999999999999999999999999
Q ss_pred ccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 364 IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 364 ~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++..+|++..+|.||.|.++++.|||+|+.++++|++|..+|.+||.+..+++.+.+++|++.|++++++++
T Consensus 307 ~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i 378 (491)
T KOG1383|consen 307 LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKI 378 (491)
T ss_pred cccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999988875
No 2
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-51 Score=411.85 Aligned_cols=327 Identities=34% Similarity=0.489 Sum_probs=284.9
Q ss_pred CCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC---CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHH
Q 013675 97 EGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ---GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARF 172 (438)
Q Consensus 97 ~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 172 (438)
......+|+.|.. ++++.++......+..+. ++...+...... ....+.+.+..+++.|..+++.+|+..++
T Consensus 27 ~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~----~~~~a~~~~~~~~~~nl~d~~~~p~a~~~ 102 (460)
T COG0076 27 LSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTR----VPPVAAELLVSALNKNLGDPDESPAAAEL 102 (460)
T ss_pred hhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCC----CHHHHHHHHHHHHhhcCCCcccChhHHHH
Confidence 4456779999999 999999998844444443 454444333333 46788899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc---CC---CCCeEEecCCCcCcHHHHHhhc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR---GI---TRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~---G~---~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
|++++.|+++++|++... +|++|+|||+||++|++++|++..... +. ..|+||+|..+|+|+.|+++++
T Consensus 103 E~~~v~~l~~l~~~~~~~-----~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l 177 (460)
T COG0076 103 EERVVNMLSDLLGAPEEA-----SGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL 177 (460)
T ss_pred HHHHHHHHHHHhCCCCCC-----ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh
Confidence 999999999999998664 899999999999999999999876322 11 2578999999999999999999
Q ss_pred CcEEEEeeCCC-CCccCHHHHHHhhccCcEE--EEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 247 NIKLWRVPVDK-EFRADVKAIKKYINRNTVL--IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 247 Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~--vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
|++++.+|+++ ++++|+++++++|+++|.. |++++|++++|.+|||++|+++|++|++|+|||+|+||+++||.+..
T Consensus 178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 99999999998 8999999999999999988 99999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
+ .++++..+||||++|+||||++|+|||++++||++ +++...+..+.|+++.....++.|||++...+++|+.++
T Consensus 258 ~----~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~ 333 (460)
T COG0076 258 G----RWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLR 333 (460)
T ss_pred c----hhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHH
Confidence 5 47899999999999999999999999999999994 555555555556665666778899999999999999999
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
.+|.+||+++.+++++++++++++|++.+.+++.
T Consensus 334 ~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~ 367 (460)
T COG0076 334 RLGREGYRKLLDRTLELARYLAEELEKLGDFELV 367 (460)
T ss_pred HhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence 9999999999999999999999999998767653
No 3
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=8.8e-51 Score=404.36 Aligned_cols=328 Identities=28% Similarity=0.409 Sum_probs=269.6
Q ss_pred CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675 97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE 173 (438)
Q Consensus 97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e 173 (438)
...+.++|++|.+ +++++++++. .++...|+ |+++|+++.+.. +..++++++...+|+|...++.+|...++|
T Consensus 6 ~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~----~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E 81 (373)
T PF00282_consen 6 ARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPS----PASILADLLASALNQNGFTWEASPAATEIE 81 (373)
T ss_dssp GGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--C----HHHHHHHHHHHHHT-BTTSTTTSHHHHHHH
T ss_pred hcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCcc----HHHHHHHHHHhhhcccccccccccccccch
Confidence 3567789999999 9999999886 77888898 999999876655 588999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHH---hcC---CCCCeEEecCCCcCcHHHHHhhc
Q 013675 174 AEVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG---ITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G---~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
.++++|+++++|+|.+.. .+..+|++|+|||+||+.|+.++|++... ..| ..++.|++++.+|+|+.|+|+++
T Consensus 82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l 161 (373)
T PF00282_consen 82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL 161 (373)
T ss_dssp HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT
T ss_pred HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee
Confidence 999999999999993210 00137899999999999999999987653 234 34678999999999999999999
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhcc---C---cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh--hh
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINR---N---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV--LP 318 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~---~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~--~p 318 (438)
|+.++.||++++++||+++|+++|.+ + +.+|+++.|++.+|.+||+++|+++|+++++|+|||+||||++ .|
T Consensus 162 Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~ 241 (373)
T PF00282_consen 162 GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSP 241 (373)
T ss_dssp TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHC
T ss_pred eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccc
Confidence 99999999999999999999999864 2 6699999999999999999999999999999999999999944 34
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCccCCC
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTVAGSR 389 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~~gsr 389 (438)
+.+ ++.+...++||+++|+||||++|++||++++|++..+...+...++|.+ ..+.+.++.+||
T Consensus 242 ~~~-------~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR 314 (373)
T PF00282_consen 242 EYR-------HLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR 314 (373)
T ss_dssp TTG-------GGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG
T ss_pred ccc-------ccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc
Confidence 322 3455666789999999999999999999999999877665545555544 224456888999
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
+...+++|++|+.+|.+||++.+++..++++++++.|++.|++++.
T Consensus 315 -~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~ 360 (373)
T PF00282_consen 315 -RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV 360 (373)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred -cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6667799999999999999999999999999999999999988764
No 4
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=7.1e-49 Score=403.28 Aligned_cols=327 Identities=17% Similarity=0.192 Sum_probs=269.7
Q ss_pred CCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHH
Q 013675 97 EGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFE 173 (438)
Q Consensus 97 ~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e 173 (438)
...+.++|++|.+ +++++++.+. .++...|+ |+++|++..+.. ...++.+++...++.+...++.+|+..++|
T Consensus 97 ~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~----~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE 172 (539)
T PLN02590 97 DMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTS----VAGFLGEMLNAGLSVVGFTWLTSPAATELE 172 (539)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCc----HHHHHHHHHHHhcccccCCcccCchhHHHH
Confidence 3456789999999 9999999886 78888897 999999765555 478889999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHHhcC---CCCCeEEecCCCcCcHHHHHhhcCc-
Q 013675 174 AEVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRNKRG---ITRPEMIIPVSAHSAYDKAAQYFNI- 248 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G---~~~~~Viv~~~~h~s~~~a~~~~Gi- 248 (438)
.++++|+++++|+|+... .+..+|++|+|||+|+++|+.++|++..+..| ..+..|++++.+|+|+.|+++++|+
T Consensus 173 ~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg 252 (539)
T PLN02590 173 IIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIH 252 (539)
T ss_pred HHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCC
Confidence 999999999999987400 00127899999999999999999997654333 2344678899999999999999999
Q ss_pred --EEEEeeCCC--CCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 249 --KLWRVPVDK--EFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 249 --~v~~v~~~~--~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
+++.||+|+ +++||+++|+++|.++ |.+|+++++++.+|.+||+++|+++|++||+|+||||||||++++
T Consensus 253 ~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~ 332 (539)
T PLN02590 253 EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACI 332 (539)
T ss_pred cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhc
Confidence 699999984 6899999999999753 789999999999999999999999999999999999999999874
Q ss_pred hhhhcCCCCCCC---ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCcc
Q 013675 319 FAKKLGYPIPPF---DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTVA 386 (438)
Q Consensus 319 f~~~~g~~~p~~---~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~~ 386 (438)
.|++ ......+||+++|+|||+++|++||++++|++......+...++|.. ..+...++.
T Consensus 333 --------~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~ 404 (539)
T PLN02590 333 --------CPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQIS 404 (539)
T ss_pred --------ChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCC
Confidence 2223 23445579999999999999999999999987544332222222211 123344566
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
.+|... ..++|++|+.+|.+||++.+++.+++|+++.+.|++.|+++++
T Consensus 405 lsRr~r-aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~ 453 (539)
T PLN02590 405 LSRRFR-SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVV 453 (539)
T ss_pred CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 566543 3599999999999999999999999999999999999988863
No 5
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=100.00 E-value=7.1e-47 Score=381.76 Aligned_cols=324 Identities=22% Similarity=0.316 Sum_probs=271.6
Q ss_pred CCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675 98 GWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV 176 (438)
Q Consensus 98 ~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~ 176 (438)
....+||++|.+ +++++++.....-+...++++.|++.....+ + +.+++..+++.|..++..+|...++|+++
T Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~iyld~~a~~~~~~~~tt~~~p-----~-~~~~~~~~l~~~~~np~s~~~~~~le~~~ 85 (431)
T TIGR01788 12 IPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEP-----E-ARKLMDETINKNMIDKDEYPQTAEIENRC 85 (431)
T ss_pred CCcccCCCCCCCHHHHHHHHHHHhhhcCCcceeeeeeeCCCCCH-----H-HHHHHHHHHhcCCCCcccCccHHHHHHHH
Confidence 345689999999 9999999987443444457888887544333 2 45666666777888888888888999999
Q ss_pred HHHHHHHhCCC-C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcC--CCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675 177 IAMTAALLGNK-E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRG--ITRPEMIIPVSAHSAYDKAAQYFNIK 249 (438)
Q Consensus 177 ~~~~a~l~g~~-~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G--~~~~~Viv~~~~h~s~~~a~~~~Gi~ 249 (438)
++|+++++|++ + ++ ++|++|+||||||++|+.++++.... ..| ..+.+|++++.+|+|+.++++.+|++
T Consensus 86 ~~~la~llg~~~~~~~----~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~ 161 (431)
T TIGR01788 86 VNMLADLWHAPAKDAE----AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161 (431)
T ss_pred HHHHHHHhCCCCCCCC----CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCce
Confidence 99999999998 3 34 57788999999999999998854322 112 23468999999999999999999999
Q ss_pred EEEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc------CCeEEEeccccchhhhhhhh
Q 013675 250 LWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH------GTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 250 v~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~------~i~lhVD~a~gg~~~pf~~~ 322 (438)
++.||+|++ +.+|+++|+++|+++|.+|+++++||.+|.+||+++|+++|+++ |+|+|||+||||+.+||..
T Consensus 162 v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~- 240 (431)
T TIGR01788 162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVY- 240 (431)
T ss_pred eEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhC-
Confidence 999999985 69999999999999999999999999999999999999999999 9999999999999998752
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
+. . ++++...++||+++|+|||+++|+|+|++++|+++.....+...++|.++...+.++.++|++..+++.|+.|+
T Consensus 241 -~~-~-~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~ 317 (431)
T TIGR01788 241 -PD-L-EWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFL 317 (431)
T ss_pred -CC-c-hhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHH
Confidence 21 2 46777889999999999999999999999999875444444455667766555568889999876778999999
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+|.+||+++.++++++++++.+.|++.|++++
T Consensus 318 ~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el 350 (431)
T TIGR01788 318 RLGREGYRKIMQNSLDVARYLAEEIAKLGPFEI 350 (431)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999988875
No 6
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=5.7e-46 Score=381.70 Aligned_cols=325 Identities=18% Similarity=0.209 Sum_probs=265.2
Q ss_pred CCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHH
Q 013675 98 GWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEA 174 (438)
Q Consensus 98 ~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~ 174 (438)
.....+|++|.+ +++++++.+. .+....|+ |+++|++..+.. ...++++++...+|.+...++.+|...++|.
T Consensus 50 ~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~----~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~ 125 (490)
T PLN02880 50 LLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSS----VAGFLGEMLSAGLNIVGFSWITSPAATELEM 125 (490)
T ss_pred hccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCc----HHHHHHHHHHHhhccCCcccccCcccHHHHH
Confidence 445678999999 9999999885 78888888 999999765555 4688888888888999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCC-CCccceeEcCChHHHHHHHHHHHHHHHHHhcCC---CCCeEEecCCCcCcHHHHHhhcCc--
Q 013675 175 EVIAMTAALLGNKEKAS-GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI---TRPEMIIPVSAHSAYDKAAQYFNI-- 248 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~-~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~---~~~~Viv~~~~h~s~~~a~~~~Gi-- 248 (438)
++.+|+++++|+++... .+...|++|+|||+||++|+.++|++..+..|. .+..|++|+.+|+|+.|+++++|+
T Consensus 126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~ 205 (490)
T PLN02880 126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHP 205 (490)
T ss_pred HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCH
Confidence 99999999999986410 000168999999999999999999876544332 345678899999999999999999
Q ss_pred -EEEEeeCCC--CCccCHHHHHHhhccC------cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 249 -KLWRVPVDK--EFRADVKAIKKYINRN------TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 249 -~v~~v~~~~--~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
.++.||+|+ +++||+++|+++|+++ |.+|+++++++.+|.+||+++|+++|++||+|+|||+||||++++
T Consensus 206 ~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~- 284 (490)
T PLN02880 206 ENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACI- 284 (490)
T ss_pred HHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHh-
Confidence 489999985 6899999999999742 789999999999999999999999999999999999999998764
Q ss_pred hhhcCCCCCCCccCCC---CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC---------CccCCCCc-c
Q 013675 320 AKKLGYPIPPFDFSVQ---GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG---------GLYVSPTV-A 386 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~---gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g---------~~~~~~~~-~ 386 (438)
.|+++.... ++||+++|+|||+++|++||++++|++......+....+|.. ..+...++ .
T Consensus 285 -------~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~ 357 (490)
T PLN02880 285 -------CPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPL 357 (490)
T ss_pred -------CHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCC
Confidence 234443333 469999999999999999999999976543332222222211 01222234 4
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
|+|..++ ++|++++.+|.+|+++.+++.+++++++.+.|++.|++++.
T Consensus 358 ~rr~~al--klw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~ 405 (490)
T PLN02880 358 GRRFRSL--KLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV 405 (490)
T ss_pred CCcccHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 6666665 99999999999999999999999999999999999888753
No 7
>PLN02263 serine decarboxylase
Probab=100.00 E-value=5.4e-45 Score=365.77 Aligned_cols=295 Identities=20% Similarity=0.231 Sum_probs=238.2
Q ss_pred HHHHHHHHHH-hCCCCCCCCCceeeeecCCCCcchH-HHHHHHHHHHhhccCCCCccc-ch---hHHHHHHHHHHHHHHH
Q 013675 110 VGVIEKLKEE-KGKDVVWQGKCSGTVYIGGSEAEGH-FSLINEACSMFAHTNPLHLDI-FQ---SVARFEAEVIAMTAAL 183 (438)
Q Consensus 110 ~~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~-~~---~~~~~e~~~~~~~a~l 183 (438)
+++++.+.+. ..+.. ++.|+ +.... . ...+.+.+. +...|..++-. ++ +.+++|.++.+|++++
T Consensus 76 ~~~l~~~~~~~~~~~~----~~~gY--p~n~~---~d~s~l~~~l~-~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L 145 (470)
T PLN02263 76 ASVLARYRKTLVERTK----HHLGY--PYNLD---FDYGALGQLQH-FSINNLGDPFIESNYGVHSRQFEVGVLDWFARL 145 (470)
T ss_pred HHHHHHHHHHHHhccc----ceeCC--CCccc---CChhhHHHHHH-hhccCCCCccccCCcchhHHHHHHHHHHHHHHH
Confidence 5566666665 33332 24444 22222 2 345666554 44555555544 44 6999999999999999
Q ss_pred hCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCH
Q 013675 184 LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263 (438)
Q Consensus 184 ~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~ 263 (438)
+|.++++ .+|++|+||||||++|+.++|++.. +..+++|+.+|+|+.|+++++|++++.||++++++||+
T Consensus 146 ~g~p~~~----~~G~vtsGGTEaNL~Al~aARe~~~------~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~ 215 (470)
T PLN02263 146 WEIEKNE----YWGYITNCGTEGNLHGILVGREVFP------DGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDC 215 (470)
T ss_pred hCCCCCC----CeEEEeCcHHHHHHHHHHHHHhhcC------CcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcH
Confidence 9998743 3899999999999999999998532 14789999999999999999999999999999999999
Q ss_pred HHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcCC-----eEEEeccccchhhhhhhhcCCCCCCCccCCC
Q 013675 264 KAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGT-----CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ 335 (438)
Q Consensus 264 ~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i-----~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~ 335 (438)
++|+++|.++ +.+|+++.|++++|.+||+++|+++|+++|+ |+||||||||+++||++. .|++++...
T Consensus 216 ~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~----~~~~df~~~ 291 (470)
T PLN02263 216 ADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR----APKVTFKKP 291 (470)
T ss_pred HHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc----ccccCCCcC
Confidence 9999999765 6889999999999999999999999999997 999999999999999864 346888765
Q ss_pred CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHH
Q 013675 336 GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA 415 (438)
Q Consensus 336 gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~ 415 (438)
+||+++|+||||++|++||++++|++... .+....+|... ...++.|||++...+++|++|+.+|.+||++.+++
T Consensus 292 -vDSIsvD~HK~l~~P~~cgvll~R~~~~~--~~~~~~~Yl~~--~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~ 366 (470)
T PLN02263 292 -IGSVSVSGHKFVGCPMPCGVQITRMEHIN--VLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK 366 (470)
T ss_pred -ccEEEECCccccCCCcCEEEEEEehhhHh--hhccChHhhCC--CCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999975431 11222233322 23578999999877899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcc
Q 013675 416 IMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 416 ~~~~a~~l~~~L~~~~g~~ 434 (438)
+.++|+++.+.|+++ +++
T Consensus 367 ~~~~A~~l~~~l~~~-g~~ 384 (470)
T PLN02263 367 CLRNAHYLKDRLREA-GIS 384 (470)
T ss_pred HHHHHHHHHHHHHhC-CCe
Confidence 999999999999987 443
No 8
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=9.9e-44 Score=365.81 Aligned_cols=322 Identities=22% Similarity=0.302 Sum_probs=258.8
Q ss_pred CCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675 100 WTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV 176 (438)
Q Consensus 100 ~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~ 176 (438)
..++|++|.+ +++++++.+. .++...|. |++.|++..+... ....+.+ +...+|.|...++.+|...++|.++
T Consensus 59 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~~p~---~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v 134 (522)
T TIGR03799 59 SAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSALPY---FMLPLSK-LMVALNQNLVKIETSKAFTPLERQV 134 (522)
T ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccCCCch---HHHHHHH-HHHHhcCCcceeecCcchHHHHHHH
Confidence 5679999999 9999887664 78888888 9999998765222 2222445 5557899999999999999999999
Q ss_pred HHHHHHHhCCCCCC-------CCCccceeEcCChHHHHHHHHHHHHHHHHHh---------c---------CCCCCeEEe
Q 013675 177 IAMTAALLGNKEKA-------SGGQVCGNMTSGGTESILLAVKSSRDYMRNK---------R---------GITRPEMII 231 (438)
Q Consensus 177 ~~~~a~l~g~~~~~-------~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~---------~---------G~~~~~Viv 231 (438)
.+|++++++..++. ..+..+|++|+|||+||++|+.++|++.... . |.+++.|++
T Consensus 135 ~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~ 214 (522)
T TIGR03799 135 LGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILV 214 (522)
T ss_pred HHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEE
Confidence 99999998632110 0001378999999999999999999875321 1 223568999
Q ss_pred cCCCcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHc
Q 013675 232 PVSAHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSH 302 (438)
Q Consensus 232 ~~~~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~ 302 (438)
++.+|+|+.|+++.+|+ +++.||+|++++||+++|+++|++ .+.+|+.+++++.+|.+||+++|+++|+++
T Consensus 215 S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~ 294 (522)
T TIGR03799 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQEL 294 (522)
T ss_pred CCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHc
Confidence 99999999999999998 899999999999999999999963 357788889999999999999999999999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccC---CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC---
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS---VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS--- 376 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~---~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~--- 376 (438)
|+|+|||+||||+.++ .++++.. ..++||+++|+|||+++|+|+|++++|++...+ .+.....|.
T Consensus 295 g~~lHVDaA~gg~~~~--------~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~-~~~~~~~Yl~~~ 365 (522)
T TIGR03799 295 GCHFHVDAAWGGATLL--------SNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMS-AIEHHAEYILRK 365 (522)
T ss_pred CCeEEEEchhhhHHHh--------CHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHH-HhccCcchhcCC
Confidence 9999999999988764 1122222 236799999999999999999999999876543 222222331
Q ss_pred -CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 377 -GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 377 -g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+..+...+++|+|++.. .++|++++.+|.+|+++++++..++++++.+.|++.|++++
T Consensus 366 ~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el 424 (522)
T TIGR03799 366 GSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFEL 424 (522)
T ss_pred CCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 22344567889998775 47999999999999999999999999999999999999876
No 9
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=8.9e-43 Score=361.37 Aligned_cols=319 Identities=23% Similarity=0.365 Sum_probs=258.3
Q ss_pred CCCCCCCCc-HHHHHHHHHH-hCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHH
Q 013675 101 TELPRAGLG-VGVIEKLKEE-KGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEV 176 (438)
Q Consensus 101 ~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~ 176 (438)
..+++...+ +++++++.+. .+....|+ + ++.|++..+.. .++++++++....|+|...++.+|...++|.++
T Consensus 53 ~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~~~----~paila~~~a~~~N~n~~~~e~SP~~t~lE~~v 128 (608)
T TIGR03811 53 KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGHMNSETL----MPAILAYNYAMLWNGNNVAYESSPATSQMEEEV 128 (608)
T ss_pred cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEECcCCCC----HHHHHHHHHHHHhCCCCCccccCchHHHHHHHH
Confidence 356666667 9999999886 56777877 6 99999977666 578889999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH-----Hh------------------------------
Q 013675 177 IAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-----NK------------------------------ 221 (438)
Q Consensus 177 ~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~-----~~------------------------------ 221 (438)
.+|+|+++|++.. +|++|+|||+||+.|+.++|+... +.
T Consensus 129 i~~la~l~G~~~~------~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~ 202 (608)
T TIGR03811 129 GKEFATLMGYKNG------WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAG 202 (608)
T ss_pred HHHHHHHhCCCCC------CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccc
Confidence 9999999999864 789999999999999999998531 00
Q ss_pred ------------cC--CCCC-eEEecCCCcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhccC------cEEE
Q 013675 222 ------------RG--ITRP-EMIIPVSAHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINRN------TVLI 277 (438)
Q Consensus 222 ------------~G--~~~~-~Viv~~~~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~~------t~~v 277 (438)
.| ..+. ++++|..+|+|+.|++.++|+ +++.||+|++++||+++|+++|++. +.+|
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~V 282 (608)
T TIGR03811 203 DQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGV 282 (608)
T ss_pred cchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 00 0111 689999999999999999999 6999999999999999999999742 6789
Q ss_pred EEecCCCCCccccCHHHHHHHH---HHcCC--eEEEeccccchhhh-hhhhcCCCCCCCc----------c---------
Q 013675 278 VGSAPGFPHGIIDPIQELGELA---LSHGT--CLHVDLCLGGFVLP-FAKKLGYPIPPFD----------F--------- 332 (438)
Q Consensus 278 v~~~~~~~tG~iddi~~I~~la---~~~~i--~lhVD~a~gg~~~p-f~~~~g~~~p~~~----------~--------- 332 (438)
|++.|+|.+|.+||+++|+++| +++|+ |+||||||||+..+ |++..+..+|..+ |
T Consensus 283 VataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~ 362 (608)
T TIGR03811 283 VGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISR 362 (608)
T ss_pred EEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccH
Confidence 9999999999999999999999 67898 69999999998632 3322111111000 0
Q ss_pred -------CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC---C----CccCCCCccCCCCCchHHHHH
Q 013675 333 -------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS---G----GLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 333 -------~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~---g----~~~~~~~~~gsr~~~~ia~~~ 398 (438)
...++||+++|+||||+.|++||++++|++.++... .....|. + ......++.|||+|+..+++|
T Consensus 363 ~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~-~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW 441 (608)
T TIGR03811 363 EVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVI-SYFATYVFEKGADIPALLGAYILEGSKAGATAASVW 441 (608)
T ss_pred hHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHH-hcCcchhccccccCcccccccceecCCccHHHHHHH
Confidence 245689999999999999999999999998754321 1112221 1 123445789999998788999
Q ss_pred HHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 399 AALMSL--GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 399 aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++++.+ |.+||.+++++++++++++.+.|++.
T Consensus 442 ~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 442 AAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 99999999999999999999999884
No 10
>PLN03032 serine decarboxylase; Provisional
Probab=100.00 E-value=6.3e-43 Score=346.20 Aligned_cols=263 Identities=20% Similarity=0.263 Sum_probs=222.0
Q ss_pred HHHhhccCCCCcccc----hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675 152 CSMFAHTNPLHLDIF----QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227 (438)
Q Consensus 152 ~~~~~~~n~~~~~~~----~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~ 227 (438)
+..+...|..+|..+ ...+++|+++++|+++++|+++++ ++|+||+||||||++|+.++|+.. ++ +
T Consensus 43 ~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~----~~G~fTsGGTEaNl~al~~ar~~~---~~---~ 112 (374)
T PLN03032 43 LMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDE----YWGYITTCGTEGNLHGILVGREVF---PD---G 112 (374)
T ss_pred HHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCcc----CCEEEeCchHHHHHHHHHHHHHhC---CC---c
Confidence 334444444444333 368999999999999999998776 579999999999999999988642 22 5
Q ss_pred eEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcC-
Q 013675 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHG- 303 (438)
Q Consensus 228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~- 303 (438)
.|+++..+|+|+.|+++++|++++.||++++|++|+++|+++|++ +|.+|+++++||++|.+||+++|+++|+++|
T Consensus 113 ~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~ 192 (374)
T PLN03032 113 ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGY 192 (374)
T ss_pred EEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999999987 4889999999999999999999999999996
Q ss_pred ----CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675 304 ----TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (438)
Q Consensus 304 ----i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~ 379 (438)
+|+|||+|+|++.+||... .|++++.. ++||+++|+||++++|+|+|++++|++.+.. +....+|...
T Consensus 193 ~~~~~~lHvDaA~gg~~~p~~~~----~~~~~~~~-~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~--~~~~~~Yl~~- 264 (374)
T PLN03032 193 TEDRFYIHCDGALFGLMMPFVSR----APEVTFRK-PIGSVSVSGHKFLGCPMPCGVALTRKKHVKA--LSQNVEYLNS- 264 (374)
T ss_pred CCCCeeEEEEccchhhhhhccCC----CcccCCCc-CCcEEEECcccccCCCcCeEEEEEEchhhHh--hccCCcccCC-
Confidence 5999999999999998653 34677764 7999999999998889999999999754321 2222333322
Q ss_pred cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
...++.|||++...+++|++|+.+|.+||++.++++.++++++.+.|++. +++
T Consensus 265 -~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~ 317 (374)
T PLN03032 265 -RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLT 317 (374)
T ss_pred -CCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 24688999999888899999999999999999999999999999999886 554
No 11
>PRK02769 histidine decarboxylase; Provisional
Probab=100.00 E-value=4e-42 Score=342.77 Aligned_cols=258 Identities=24% Similarity=0.343 Sum_probs=221.8
Q ss_pred cCCCCcccch----hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 013675 158 TNPLHLDIFQ----SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV 233 (438)
Q Consensus 158 ~n~~~~~~~~----~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~ 233 (438)
.|...|..++ ..+++|+++++|+++++|+++.+ ++|++|+||||||+.++.++|++. ++ ++|++++
T Consensus 48 ~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~----~~G~~TsGgTean~~a~~~ar~~~---~~---~~ii~s~ 117 (380)
T PRK02769 48 NNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNE----SWGYITNGGTEGNLYGCYLARELF---PD---GTLYYSK 117 (380)
T ss_pred ccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCC----CCEEEecChHHHHHHHHHHHHHhC---CC---cEEEeCC
Confidence 3444444444 47899999999999999998665 579999999999999999988642 34 7999999
Q ss_pred CCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcC---CeEE
Q 013675 234 SAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHG---TCLH 307 (438)
Q Consensus 234 ~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~---i~lh 307 (438)
.+|+|+.++++++|++.+.||+++++++|+++|+++|+++ |++|++++++|++|.+||+++|+++|++|| +|+|
T Consensus 118 ~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lH 197 (380)
T PRK02769 118 DTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIH 197 (380)
T ss_pred CceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEE
Confidence 9999999999999999999999989999999999999887 999999999999999999999999999998 6999
Q ss_pred EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g 387 (438)
||+|+|++.+||++. .+++++.. ++||+++|+|||+++|+|+|++++|++.+... ....+|... ...++.|
T Consensus 198 VDaA~gg~~~p~~~~----~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~--~~~~~yl~~--~d~t~~G 268 (380)
T PRK02769 198 ADAALSGMILPFVNN----PPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERI--SVDVDYIGS--RDQTISG 268 (380)
T ss_pred EEecccceeecccCc----cccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhc--ccCccccCC--CCCCccC
Confidence 999999999998753 33688877 99999999999998999999999997644322 122333322 2457899
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
||++..++++|++|+.+|.+|++++.+++.++++++.++|++. |+++
T Consensus 269 SR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~ 315 (380)
T PRK02769 269 SRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPA 315 (380)
T ss_pred CCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE
Confidence 9999888999999999999999999999999999999999875 5543
No 12
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=295.31 Aligned_cols=332 Identities=18% Similarity=0.210 Sum_probs=263.4
Q ss_pred HhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHHhC-CCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCC
Q 013675 83 KVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEEKG-KDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNP 160 (438)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 160 (438)
|+++.+.+.-. .+...+++|+++.| ++++...++... ....-+|++....+.+ -+ +..+..+++.+..|+|.
T Consensus 57 kv~~fhhP~~L--~~l~nlel~~~~esl~qil~~cr~tl~y~vKTgHprffNQl~~g-lD---~~~Lag~wlT~t~Ntn~ 130 (510)
T KOG0629|consen 57 KVLDFHHPDEL--KELFNLELRDQPESLAQILEDCRDTLKYSVKTGHPRFFNQLSSG-LD---PIGLAGEWLTSTANTNM 130 (510)
T ss_pred eeecccChHHH--HHHhCcccCCChhhHHHHHHHHHHHHHhhhccCCCcchhhhccC-CC---HHHHHHHHHHhccCCCC
Confidence 55555555433 34778899999999 999999998633 4444456665554443 33 57889999999999999
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC---CCCeEEecCC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI---TRPEMIIPVS 234 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~---~~~~Viv~~~ 234 (438)
+.|+..|.+.-||.++...+.++.|++... .|++++||+-||+.++.++|..... ..|. +.-.+++|+.
T Consensus 131 ~TYEiAPvF~lmE~~vl~km~~ivGw~~~~-----DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSee 205 (510)
T KOG0629|consen 131 FTYEIAPVFVLMEEEVLAKMREIVGWEEGG-----DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEE 205 (510)
T ss_pred ceEEecceEEeehHHHHHHHHHHhCCCCCC-----CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEeccc
Confidence 999999999999999999999999999864 6799999999999999999975432 2332 2234578999
Q ss_pred CcCcHHHHHhhcCc---EEEEeeCCCCCccCHHHHHHhhcc---C---cEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675 235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKAIKKYINR---N---TVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi---~v~~v~~~~~~~~d~~~Le~~I~~---~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~ 305 (438)
+|+|+.|++..+|+ .++.|++++.|+|++++||+.|-+ + |.+|.+++++|..|++||++.|+++|++|++|
T Consensus 206 sHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lW 285 (510)
T KOG0629|consen 206 SHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLW 285 (510)
T ss_pred chhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEE
Confidence 99999999999995 899999999999999999999953 3 79999999999999999999999999999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCC---ccEEEeCCCCCCCCCCCcEEEEEecccccccc------hhcccccC
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG---VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQ------FVAVTEWS 376 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g---vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~------~~~~~~~~ 376 (438)
+|||+||||+++. .+..+....| ++|+++++||+..+|..||.+++|.+.++... |.+.++-.
T Consensus 286 mHvDAAwGGglLm--------S~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~ 357 (510)
T KOG0629|consen 286 MHVDAAWGGGLLM--------SRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKF 357 (510)
T ss_pred EEeeccccccccc--------ChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCce
Confidence 9999999997652 1123334444 59999999999999999999999988755432 22222211
Q ss_pred CCc---cCCC-CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 377 GGL---YVSP-TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 377 g~~---~~~~-~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
-.. -+.. ..+|++.. +..+|..++.-|.+|+++.++++.++|+|+.+.|++-++.+.
T Consensus 358 YdvS~DTgdK~iQCGRh~D--~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~ 418 (510)
T KOG0629|consen 358 YDVSYDTGDKAIQCGRHVD--VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEM 418 (510)
T ss_pred eecccccccchhhcCcccc--HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 000 1111 23455555 449999999999999999999999999999999999877654
No 13
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=279.24 Aligned_cols=349 Identities=19% Similarity=0.262 Sum_probs=281.3
Q ss_pred chhhHHHHH-HHHhhhhhccccccccCCCCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC-CCceeeeecCCCCcchHHHH
Q 013675 72 GVNKYIEAE-KQKVVDKMQSGVKSKREGWWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ-GKCSGTVYIGGSEAEGHFSL 147 (438)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 147 (438)
++.++.+.. .++++.++.+... +...+.+.|+++.+ ++|++++++. +++.+.|+ |++..+ |++++. ...+
T Consensus 16 ~IadY~e~ir~r~v~P~v~PGYl--~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAy-fpa~~s---~~si 89 (511)
T KOG0628|consen 16 YIADYLENIRKRRVLPDVKPGYL--RDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAY-FPAGNS---YPSI 89 (511)
T ss_pred HHHHHHHhhhccCCCCCCCcchh--hhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeE-ccCccc---hHHH
Confidence 344444332 2445555555444 56778899999999 9999999998 89999999 777655 566665 6889
Q ss_pred HHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCC---CCCccceeEcCChHHHHHHHHHHHHHHHHHh--c
Q 013675 148 INEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNK--R 222 (438)
Q Consensus 148 ~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~---~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~--~ 222 (438)
+++.+...++.-.+.+..+|..+++|.-+.+|++++++.|... ..|+-+|++-+++|++++.++.++|...-.+ .
T Consensus 90 ladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~ 169 (511)
T KOG0628|consen 90 LADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKS 169 (511)
T ss_pred HHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhc
Confidence 9999888888888889999999999999999999999997422 1234588999999999999999999765432 1
Q ss_pred C---CC------CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC------cEEEEEecCCCCCc
Q 013675 223 G---IT------RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN------TVLIVGSAPGFPHG 287 (438)
Q Consensus 223 G---~~------~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~------t~~vv~~~~~~~tG 287 (438)
+ .+ +-.++.++.+|.|+.|+|...|++++.++.|+++.|+.+.|+++|.++ |.+++++.+++.+.
T Consensus 170 ~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~c 249 (511)
T KOG0628|consen 170 RPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSC 249 (511)
T ss_pred CCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCcccc
Confidence 1 11 224689999999999999999999999999999999999999999875 78999999999999
Q ss_pred cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc---cEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675 288 IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV---TSISVDVHKYGLAPKGTSVVLYRNREI 364 (438)
Q Consensus 288 ~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv---dsis~s~hK~~~~p~g~g~l~~r~~~~ 364 (438)
.+|++++|..+|+++|+|+|||+||+|.+.- +|+++....|+ ||+.+++|||+..-..|+.++++|...
T Consensus 250 a~D~l~elg~Vc~~~glWLHVDAAYAGsa~i--------CpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~ 321 (511)
T KOG0628|consen 250 AFDELEELGPVCREEGLWLHVDAAYAGSAFI--------CPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTK 321 (511)
T ss_pred ccccHHHhcchhhhcCEEEEeehhhcccccc--------CHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCce
Confidence 9999999999999999999999999886542 56777666665 999999999999999999999998854
Q ss_pred cccchhcccc-----cCCC--ccCCCCcc-CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 365 RKHQFVAVTE-----WSGG--LYVSPTVA-GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 365 ~~~~~~~~~~-----~~g~--~~~~~~~~-gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
....+...+- +.+. +|...+++ |+|..++ .+|..++.+|.+++++.+++..++++.+.+.+.+.+.+++.
T Consensus 322 ~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSL--KlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~ 399 (511)
T KOG0628|consen 322 LSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSL--KLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIV 399 (511)
T ss_pred eeeeeecChHhhcchhhccCCCccccccccccchhhH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceee
Confidence 4433322222 2221 23333333 6778887 99999999999999999999999999999999988877753
No 14
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=100.00 E-value=3.1e-33 Score=280.10 Aligned_cols=303 Identities=35% Similarity=0.561 Sum_probs=239.8
Q ss_pred Cc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC
Q 013675 108 LG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN 186 (438)
Q Consensus 108 ~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~ 186 (438)
.+ +|+++.++++...+...+ +++|..+....+ .+ .+++..+...+...+...++..++++++++++++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~ 74 (371)
T PRK13520 2 LSEEEILEELEEYRSEDLKYE-RILSSMCTEPHP-----IA-RKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL 74 (371)
T ss_pred CCHHHHHHHHHHHHhcCCCHH-HeeeeeecCchH-----HH-HHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC
Confidence 46 899999999977776666 467776554433 22 24444444444444444577888889999999999999
Q ss_pred CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHH
Q 013675 187 KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAI 266 (438)
Q Consensus 187 ~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~L 266 (438)
++.. +++++|||+++..++++++.... ++| ++|+++...|+++.++++.+|++++.+|.++++.+|+++|
T Consensus 75 ~~~~------~~~~~ggt~a~~~a~~~~~~~~~-~~~---~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l 144 (371)
T PRK13520 75 PDAY------GYITSGGTEANIQAVRAARNLAK-AEK---PNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAV 144 (371)
T ss_pred CCCC------eEEecCcHHHHHHHHHHHHhhcc-CCC---ceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHH
Confidence 7653 38999999999999998875311 123 7899999999999999999999999999988889999999
Q ss_pred HHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCC
Q 013675 267 KKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK 346 (438)
Q Consensus 267 e~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK 346 (438)
+++|++++++|++++++|++|.++|+++|.++|+++|+++|||++|+++..|+... .+.+++...++|++++++||
T Consensus 145 ~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~----~~~~~~~~~~vd~~~~s~~K 220 (371)
T PRK13520 145 EDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDD----PPNFDFSLPGVDSITIDPHK 220 (371)
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcC----CCCccccCCCCceEEECCcc
Confidence 99999999888899999999999999999999999999999999999988775321 12356667789999999999
Q ss_pred CCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHH
Q 013675 347 YGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKG 426 (438)
Q Consensus 347 ~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~ 426 (438)
|+++|.++|++++++++..+... ....|..+. ......|++++..+++++++++.++.+|+++..++..++++++.+.
T Consensus 221 ~~~a~~~~G~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 298 (371)
T PRK13520 221 MGLAPIPAGGILFRDESYLDALA-VDTPYLTSK-KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEE 298 (371)
T ss_pred ccCccCCceEEEEcCHHHHHhhc-ccCccccCC-CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHH
Confidence 99889999998888765443221 111221111 1223457888888899999999999999999999999999999999
Q ss_pred hhcCCCcc
Q 013675 427 LVLFPMFL 434 (438)
Q Consensus 427 L~~~~g~~ 434 (438)
|+++ |++
T Consensus 299 L~~~-g~~ 305 (371)
T PRK13520 299 LKER-GFE 305 (371)
T ss_pred HHhC-CCE
Confidence 9987 665
No 15
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=100.00 E-value=1.6e-31 Score=267.99 Aligned_cols=304 Identities=35% Similarity=0.563 Sum_probs=234.5
Q ss_pred HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCC
Q 013675 110 VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKE 188 (438)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~ 188 (438)
+++++.+.++..+..+.+ ++........+.+ . ..+++..+...+...+...++..++++++++++++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 76 (373)
T TIGR03812 3 EEVLEELKEYRSEDLKYSDGRILGSMCTNPHP-----I-AVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPD 76 (373)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCchH-----H-HHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 788999999877777776 6766555443332 2 12233333333333333456778889999999999999987
Q ss_pred CCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHH
Q 013675 189 KASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIK 267 (438)
Q Consensus 189 ~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le 267 (438)
.+ + ++++|+|+++..++.+++..... .+| ++|+++.++|+++.++++.+|++++.+|+++++.+|+++++
T Consensus 77 ~~----~--~~~~g~~~~~~~~~~~~~~~~~~~~~g---~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~ 147 (373)
T TIGR03812 77 AY----G--YIVSGGTEANIQAVRAAKNLAREEKRT---PNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVE 147 (373)
T ss_pred CC----e--EEeccHHHHHHHHHHHHHHHHhccCCC---cEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHH
Confidence 64 3 78999999999998887643221 234 79999999999999999999999999999888999999999
Q ss_pred HhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC
Q 013675 268 KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY 347 (438)
Q Consensus 268 ~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~ 347 (438)
+++++++..++..+++|++|.++|+++|.++|+++|+++|||++|+++..|+... |...+++++...++|++++++|||
T Consensus 148 ~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~-~~~~~~~d~~~~~~d~~~~s~~K~ 226 (373)
T TIGR03812 148 DLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKK-GYNPPPFDFSLPGVQSITIDPHKM 226 (373)
T ss_pred HHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhc-CCCCCCccccCCCCCEEEECcccc
Confidence 9999888666666689999999999999999999999999999999888775432 211235677777999999999999
Q ss_pred CCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675 348 GLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427 (438)
Q Consensus 348 ~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L 427 (438)
+++|.++|++++++++..+... ....|.... ......|+|+...+++++++++.++++|+++..++..++++++++.|
T Consensus 227 ~~~~~~~G~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L 304 (373)
T TIGR03812 227 GLSPIPAGGILFRSKSYLKYLS-VDAPYLTVK-KQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEEL 304 (373)
T ss_pred CCCcCCceEEEEeCHHHHhhhc-ccCcccCCC-CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877766543221 112222111 12234578888888999999999999999999999999999999999
Q ss_pred hcCC
Q 013675 428 VLFP 431 (438)
Q Consensus 428 ~~~~ 431 (438)
++++
T Consensus 305 ~~~g 308 (373)
T TIGR03812 305 KKIG 308 (373)
T ss_pred HhCC
Confidence 9874
No 16
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=100.00 E-value=1.2e-32 Score=273.02 Aligned_cols=248 Identities=36% Similarity=0.535 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh-
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK- 221 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~- 221 (438)
..+++.+.+....+.|...+..+++..++|+++++|+++++|.+ ... .+++|+|||+|+.+++++++.+...+
T Consensus 11 ~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~-----~~~~t~ggt~a~~~al~~~~~~~~~~~ 85 (345)
T cd06450 11 PPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDA-----DGVFTSGGSESNLLALLAARDRARKRL 85 (345)
T ss_pred HHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCC-----CEEEeCChhHHHHHHHHHHHHHhhhhh
Confidence 35777888888788887778899999999999999999999997 333 45999999999999999998643210
Q ss_pred ------cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccc
Q 013675 222 ------RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGII 289 (438)
Q Consensus 222 ------~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~i 289 (438)
+| ++++|+++.++|+++.++++.+|++++.+|+++++.+|+++|++++++ +++++++++++|++|.+
T Consensus 86 ~~~~~~~~-~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~ 164 (345)
T cd06450 86 KAGGGRGI-DKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI 164 (345)
T ss_pred hccccccc-CCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC
Confidence 11 125889999999999999999999999999998889999999999987 88999999999999999
Q ss_pred cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675 290 DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369 (438)
Q Consensus 290 ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~ 369 (438)
+|+++|+++|+++|+|+|+|++|+++..|+.... .......++|++++++|||+++|.|+|+++++
T Consensus 165 ~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~--------- 230 (345)
T cd06450 165 DPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPR-----HLDFGIERVDSISVDPHKYGLVPLGCSAVLVR--------- 230 (345)
T ss_pred CCHHHHHHHHHHhCCeEEEechhhHHHhhChhhH-----HHhcCccccCEEEEchhHhhCCCcchHHHHHH---------
Confidence 9999999999999999999999998877532110 11233457999999999999999999987655
Q ss_pred hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++++|++++.++.+|++++.++..++++++.+.|++++++++
T Consensus 231 ------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 272 (345)
T cd06450 231 ------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFEL 272 (345)
T ss_pred ------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 458999999999999999999999999999999999988764
No 17
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-32 Score=260.99 Aligned_cols=246 Identities=28% Similarity=0.399 Sum_probs=202.6
Q ss_pred cCCCCc-ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCC
Q 013675 158 TNPLHL-DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSA 235 (438)
Q Consensus 158 ~n~~~~-~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~ 235 (438)
.||..- ......+++.++.++.+++++|+++.+ + +||+|||||+++|++.+...... ++| .+||++...
T Consensus 30 gNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~e----I--iFTSG~TEsnNlaI~g~~~a~~~~~~~---~HIIts~iE 100 (386)
T COG1104 30 GNPSSLHSFGREARKAVEEAREQIAKLLGADPEE----I--IFTSGATESNNLAIKGAALAYRNAQKG---KHIITSAIE 100 (386)
T ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCe----E--EEecCCcHHHHHHHHhhHHhhhcccCC---CeEEEcccc
Confidence 455442 223457888889999999999999976 7 99999999999999985433322 234 699999999
Q ss_pred cCcHHHHHhhc---CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 236 HSAYDKAAQYF---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 236 h~s~~~a~~~~---Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
|+++...++++ |++|.++|++++|.+|+++|+++|+++|.+|.+.+.||.+|++.||++|+++|+++++++|+|+++
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhh
Confidence 99999999998 999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
.+|+ + ++|....++|++++|+||+ +||+|+|++++|+. .+- .+-..|| .+..|.|+|+
T Consensus 181 ---------a~Gk-i-pi~~~~~~vD~ls~SaHK~-~GpkGiGaLyv~~~-~~~-----~p~i~GG----gQE~g~RsGT 238 (386)
T COG1104 181 ---------AVGK-I-PIDLEELGVDLLSFSAHKF-GGPKGIGALYVRPG-VRL-----EPLIHGG----GQERGLRSGT 238 (386)
T ss_pred ---------hcCc-e-eccccccCcceEEeehhhc-cCCCceEEEEECCC-Ccc-----CceeccC----cCCCCCCCCC
Confidence 5665 5 5888888999999999999 89999999998543 221 1112233 3455667764
Q ss_pred ----hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC-CCccc
Q 013675 393 ----LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF-PMFLP 435 (438)
Q Consensus 393 ----~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~~ 435 (438)
.++++-.|++ +..+.+++...+...++++|.+.|.+. |++.+
T Consensus 239 env~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~ 285 (386)
T COG1104 239 ENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYL 285 (386)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4667777765 456778888999999999999999975 77765
No 18
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-31 Score=263.35 Aligned_cols=265 Identities=23% Similarity=0.268 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHhhccCCC--CcccchhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHH
Q 013675 144 HFSLINEACSMFAHTNPL--HLDIFQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRN 220 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~--~~~~~~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~ 220 (438)
+.+.+.+.+..+ +.|.. .+..+....+..++.++.+++++|+++ ++ | +||.|.|+|+.+...++... .
T Consensus 38 V~~a~~~~~~~~-~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~e----I--vft~~tT~aln~va~~l~~~--~ 108 (405)
T COG0520 38 VLDAVAEYYRRY-NANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDE----I--VFTRGTTEALNLVARGLGRS--L 108 (405)
T ss_pred HHHHHHHHHHhh-cCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCChhHHHHHHHHHhhhh--h
Confidence 344444444332 33333 445666778889999999999999995 55 6 99999999999999988643 2
Q ss_pred hcCCCCCeEEecCCCcCc----HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHH
Q 013675 221 KRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296 (438)
Q Consensus 221 ~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~ 296 (438)
++| |+||++...|++ |...++..|++++.+|+++++.+|.+++++.++++|++|.+++.+|.||.+.|+++|+
T Consensus 109 ~~g---deIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~ 185 (405)
T COG0520 109 KPG---DEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIA 185 (405)
T ss_pred cCC---CEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHH
Confidence 367 999999999988 6677777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS 376 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~ 376 (438)
++||++|++++||++++.... ++|+...|+|++.+|+|||++||.|+|++++|++.+.+. .|...
T Consensus 186 ~la~~~ga~v~VDaaq~~~h~-----------~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l----~P~~~ 250 (405)
T COG0520 186 ELAHEHGALVLVDAAQAAGHL-----------PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL----EPFLG 250 (405)
T ss_pred HHHHHcCCEEEEECccccCcc-----------CCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhc----CCccc
Confidence 999999999999999765443 588899999999999999999999999999986544332 11111
Q ss_pred CCcc---C------------CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 377 GGLY---V------------SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 377 g~~~---~------------~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
|+.. . .....|+.....+.++-++++++...|++++.++.+++++++.+.|+++|++++
T Consensus 251 gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i 324 (405)
T COG0520 251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEI 324 (405)
T ss_pred CCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 2111 0 112234444555678889999999999999999999999999999999999875
No 19
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.97 E-value=3.9e-29 Score=257.84 Aligned_cols=306 Identities=21% Similarity=0.229 Sum_probs=220.6
Q ss_pred CCCCCCCCCCCc-HHHHHHHHHHhCCCCCCC-CCceeeeecC-CCCcchHHHHHHHHHHH--hhccCCCCcc-cchhHHH
Q 013675 98 GWWTELPRAGLG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIG-GSEAEGHFSLINEACSM--FAHTNPLHLD-IFQSVAR 171 (438)
Q Consensus 98 ~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~--~~~~n~~~~~-~~~~~~~ 171 (438)
.....||+ +| .|++++++++..++.... ++ .|..++. +.+ ..+....... +.+.+|++++ .+++..+
T Consensus 41 ~~~~~~~~--~se~~~~~~~~~l~~~n~~~~~~~-~g~G~~~~~~~----p~i~~~~~~~~~~~~~tpYq~e~~sqG~le 113 (481)
T PRK04366 41 KEPPELPE--VSELEVVRHYTRLSQKNYGVDTGF-YPLGSCTMKYN----PKINEKVARLPGFAELHPLQPEETVQGALE 113 (481)
T ss_pred CCCCCCCC--CCHHHHHHHHHHHHhcCCCCCcce-ecCcccCCCCC----HHHHHHHHhCcchhcCCCCCChhhhhHHHH
Confidence 34567888 89 999999999966665433 33 3333222 222 2233333322 4577788876 8999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
+..++++++++++|++.. .+..++|+.+...++..++.... .+|- .+++|+++.+.|+++..+++..|+++
T Consensus 114 l~~~~~~~la~l~G~~~~-------~l~~~~GA~a~~~~l~~~r~~~~-~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~v 185 (481)
T PRK04366 114 LMYELQEWLKEITGMDAV-------TLQPAAGAHGELTGLLMIRAYHE-ARGDTKRTEVIVPDSAHGTNPASAAMAGFKV 185 (481)
T ss_pred HHHHHHHHHHHHhCCCce-------EEEeCcHHHHHHHHHHHHHHHhh-ccCcCCCCEEEEcCCccHhHHHHHHHcCCEE
Confidence 999999999999999743 25656676666665554443221 2441 34699999999999999999999999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+.+|+++++.+|+++|+++++++|++|++++|| ++|.+ +|+++|+++|+++|+++|||+|+...++ | .
T Consensus 186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~------g----~ 254 (481)
T PRK04366 186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL------G----K 254 (481)
T ss_pred EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhc------c----c
Confidence 999998889999999999999999999999998 89988 5899999999999999999999743322 1 2
Q ss_pred CccCCCCccEEEeCCCCCCCCCC-----CcEEEEEecccccccchhcccccCCCcc-CCC--------CccCCCCCchHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLY-VSP--------TVAGSRPGGLIA 395 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~--------~~~gsr~~~~ia 395 (438)
.+....|+|++++++|||+++|. |+|++.++++..+...-... .+.+..+ ... .-.++.....+.
T Consensus 255 ~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v-~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~ 333 (481)
T PRK04366 255 ARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVV-EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLV 333 (481)
T ss_pred CCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCee-eccCCceeecccccccCCCcccccCchHHHH
Confidence 34567799999999999987664 45688888653332110000 0111111 000 011111223466
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++|..+..+|.+|++++.+++..++++++++|+++
T Consensus 334 ~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 334 RAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 88889999999999999999999999999999876
No 20
>PLN02651 cysteine desulfurase
Probab=99.97 E-value=6.8e-29 Score=248.26 Aligned_cols=243 Identities=23% Similarity=0.255 Sum_probs=197.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh-
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ- 244 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~- 244 (438)
.+...++.+++++.+++++|.++++ + ++|+|+|+++++++.++..... ++| ++|+++...|+++...+.
T Consensus 38 ~~~~~~~~~~~r~~la~~~g~~~~~----v--~~t~~~t~a~~~~l~~~~~~~~-~~g---~~vl~~~~~h~s~~~~~~~ 107 (364)
T PLN02651 38 GWESEDAVEKARAQVAALIGADPKE----I--IFTSGATESNNLAIKGVMHFYK-DKK---KHVITTQTEHKCVLDSCRH 107 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhcc-CCC---CEEEEcccccHHHHHHHHH
Confidence 3456777888999999999998765 6 8999999999999988754322 345 899999999998765544
Q ss_pred --hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 245 --YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 245 --~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
..|++++.+|+++++.+|+++++++|+++|+++++++++|+||.+.|+++|+++||++|+++|||++++.+.+
T Consensus 108 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~----- 182 (364)
T PLN02651 108 LQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI----- 182 (364)
T ss_pred HHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-----
Confidence 4589999999988899999999999999999999999999999999999999999999999999999865444
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
++++...|+|++++++||| ++|.|+|+++++++..... .+.+.|+........|+.+...++++.++++
T Consensus 183 ------~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l----~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~ 251 (364)
T PLN02651 183 ------PVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVRL----EPLMSGGGQERGRRSGTENTPLVVGLGAACE 251 (364)
T ss_pred ------ccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCCC----CccccCCCccCCccCCCccHHHHHHHHHHHH
Confidence 4777888999999999999 7999999999987543321 1222232222223457777777889999998
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP 435 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~ 435 (438)
.+.. +.+++.++..++++++.+.|++ +|++++
T Consensus 252 ~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i 284 (364)
T PLN02651 252 LAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRV 284 (364)
T ss_pred HHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 8764 5588889999999999999985 677765
No 21
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.97 E-value=2.1e-28 Score=262.06 Aligned_cols=301 Identities=15% Similarity=0.186 Sum_probs=231.4
Q ss_pred Cc-HHHHHHHHHHhCCCCCCC-CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCcc-cchhHHHHHHHHHHHHHHHh
Q 013675 108 LG-VGVIEKLKEEKGKDVVWQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLD-IFQSVARFEAEVIAMTAALL 184 (438)
Q Consensus 108 ~~-~~i~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~~~~~~e~~~~~~~a~l~ 184 (438)
.| .|++++++++..++.... +++.++.|....++ ..+.+.-....|....|++|+ .++|..+++.++.+|+++++
T Consensus 466 ~sE~e~~r~~~~L~~kn~~~~~~fi~lGsctmk~na--~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~elt 543 (939)
T TIGR00461 466 HSETEMLRYLHRLESKDLALNNSMIPLGSCTMKLNA--TAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSIT 543 (939)
T ss_pred CCHHHHHHHHHHHHhcCCCccccCCCCccCCCccCH--HHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHH
Confidence 38 999999999966665544 66666666655442 445554445667778899998 99999999999999999999
Q ss_pred CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCH
Q 013675 185 GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263 (438)
Q Consensus 185 g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~ 263 (438)
|++. +++..++|+.|..++++++|.+... +| -.+.+|++|..+|.+..+.++..|++++.||++++|.+|+
T Consensus 544 Gmd~-------~Sl~p~aGA~gE~agL~aiR~y~~~-rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDl 615 (939)
T TIGR00461 544 GFDA-------ISLQPNSGAQGEYAGLRVIRSYHES-RGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDL 615 (939)
T ss_pred CCCC-------cccCCchHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCH
Confidence 9994 4488999999999999998876543 33 2457899999999999999999999999999999999999
Q ss_pred HHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccE
Q 013675 264 KAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS 339 (438)
Q Consensus 264 ~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvds 339 (438)
++|++++++ +|++|++++|+| +|.++| +++|+++||++|.+++||+|+...... ..+....|+|+
T Consensus 616 e~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~----------l~~Pg~~GaDi 684 (939)
T TIGR00461 616 VDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG----------LTSPGDLGADV 684 (939)
T ss_pred HHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC----------CCCccccCCCE
Confidence 999999984 899999999999 899987 999999999999999999997432211 22346778999
Q ss_pred EEeCCCCCCC-----CCCCcEEEEEecccccccchh----cccccCCCc-cCCCCc-cCCCCCchHHHHHHHHHHHcHHH
Q 013675 340 ISVDVHKYGL-----APKGTSVVLYRNREIRKHQFV----AVTEWSGGL-YVSPTV-AGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 340 is~s~hK~~~-----~p~g~g~l~~r~~~~~~~~~~----~~~~~~g~~-~~~~~~-~gsr~~~~ia~~~aal~~~g~~g 408 (438)
++++.||+++ ||+|+|++.+|++ +...... ...+..+.. ...... ..++........|+.++.+|.+|
T Consensus 685 ~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~G 763 (939)
T TIGR00461 685 CHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEG 763 (939)
T ss_pred EEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHH
Confidence 9999999876 6666799999964 2221100 000111100 000011 12233334568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 013675 409 YLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+++..+....+|+|++++|++.
T Consensus 764 L~~~a~~ailnAnYl~~rL~~~ 785 (939)
T TIGR00461 764 LPKASVVAILNANYMATRLKDH 785 (939)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999873
No 22
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.97 E-value=4.9e-29 Score=251.02 Aligned_cols=289 Identities=17% Similarity=0.173 Sum_probs=212.7
Q ss_pred CCCCCCCCCCc-HHHHHHHHHH-hCCCCCCC---------CCceee--------eecC---CCCcchHHHHHHHHHHHhh
Q 013675 99 WWTELPRAGLG-VGVIEKLKEE-KGKDVVWQ---------GKCSGT--------VYIG---GSEAEGHFSLINEACSMFA 156 (438)
Q Consensus 99 ~~~~lP~~g~~-~~i~~~~~~~-~~~~~~~~---------~~~~g~--------~~~~---~~~~~~~~~~~~~~~~~~~ 156 (438)
....||++|++ +.|...+.++ ..+..+|. +|+++. +|+| ..+ +.+..-+
T Consensus 26 ~~~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~---l~~~q~k------ 96 (444)
T TIGR03531 26 EQRKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGD---LVAPQPK------ 96 (444)
T ss_pred HcCcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccc---ccccCcc------
Confidence 34569999999 9999998888 33555563 556555 5554 111 2111111
Q ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675 157 HTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSA 235 (438)
Q Consensus 157 ~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~ 235 (438)
...++....+..++.+++++++|.+... .+++++||| .++.+++.+++... .+| ++||+|..+
T Consensus 97 ------a~gss~~~~l~~~~e~~~~~~~G~~~~~-----~a~~v~~~Tg~al~laL~alr~~~--~~g---d~VI~p~~t 160 (444)
T TIGR03531 97 ------AAGSSLLYKLTNKLVKDFLKLLGLRSIK-----SAFVVPLATGMSLSLCLSALRHKR--PKA---KYVIWPRID 160 (444)
T ss_pred ------ccCccHHHHHHHHHHHHHHHHcCCCCCC-----EEEEECCHHHHHHHHHHHHcCCcC--CCC---CEEEEECcC
Confidence 1234557889999999999999998543 348899999 79999988876311 134 899999999
Q ss_pred cCcHHHHHhhcCcEEEEeeC--C-CCCccCHHHHHHhhcc---CcEEEEEecC-CCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 236 HSAYDKAAQYFNIKLWRVPV--D-KEFRADVKAIKKYINR---NTVLIVGSAP-GFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 236 h~s~~~a~~~~Gi~v~~v~~--~-~~~~~d~~~Le~~I~~---~t~~vv~~~~-~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
|.+..+++.+.|++++.||+ + +++.+|+++|+++|++ ++.+++++.| ++.+|..||+++|+++|++||+|+|+
T Consensus 161 h~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIv 240 (444)
T TIGR03531 161 QKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIV 240 (444)
T ss_pred hHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999995 3 4799999999999986 4445444444 46667999999999999999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
|+|||.....+.+ .+.-......+|++++|+||++..|.++|+++++++++.+... ..|.+ +
T Consensus 241 DaAyg~~~~~~~~-----~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~---~~y~g----------~ 302 (444)
T TIGR03531 241 NNAYGLQSNKYME-----LINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEIS---KSYPG----------R 302 (444)
T ss_pred ECcCcCcChhhhh-----hhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHH---HhccC----------C
Confidence 9999864321111 0000111123799999999999999888888888887664321 12322 1
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
........+|+++..+|.+|+++.+++..++++++.+.|+++
T Consensus 303 ~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 303 ASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL 344 (444)
T ss_pred CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345689999999999999999999999999999999875
No 23
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.96 E-value=5.8e-28 Score=248.01 Aligned_cols=321 Identities=17% Similarity=0.171 Sum_probs=223.7
Q ss_pred Hhhhhhccccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCC--CCCceee-eecCCCCcchHHHHHHHHHHHhhc
Q 013675 83 KVVDKMQSGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVW--QGKCSGT-VYIGGSEAEGHFSLINEACSMFAH 157 (438)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (438)
+.++++...++.. +.....+||+.+ | +++++++.++..++..+ ...+.|. .++...+ +.....+.. -.....
T Consensus 22 ~~~~~~~~~~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p-~~~~~~~~~-~~~~~~ 98 (447)
T PRK00451 22 KSIDELFADIPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIP-AVVDHIISR-SEFYTA 98 (447)
T ss_pred CCHHHHHHhCCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCc-HHHHHHHhc-hhHHHh
Confidence 4455666555544 455677899976 8 99999999985444332 3333332 3333322 111222211 122334
Q ss_pred cCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 158 TNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 158 ~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
.|+++++.+++.++.+.+.++++++++|++.++ + ++|+|||+++..++.+.+. .+| ++|+++.+.|+
T Consensus 99 y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~----v--~~~~g~t~~~~~~~~a~~~----~~g---~~Vlv~~~~~~ 165 (447)
T PRK00451 99 YTPYQPEISQGTLQAIFEYQTMICELTGMDVAN----A--SMYDGATALAEAALMAVRI----TKR---KKVLVSGAVHP 165 (447)
T ss_pred cCCCCCccchHHHHHHHHHHHHHHHHhCCCcce----E--EecCcHHHHHHHHHHHHHh----cCC---CEEEEeCccCH
Confidence 677777889999999999999999999998764 4 8999999988877776542 255 89999999999
Q ss_pred cHHHHHhh----cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE--ecc
Q 013675 238 AYDKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV--DLC 311 (438)
Q Consensus 238 s~~~a~~~----~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV--D~a 311 (438)
++.++++. .|++++.+|++++ .+|+++++++|+++|++|++++| |+||.++|+++|+++|+++|+|+++ |..
T Consensus 166 ~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~ 243 (447)
T PRK00451 166 EYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV 243 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH
Confidence 99988765 5999999999888 99999999999999999999998 7899999999999999999999998 644
Q ss_pred ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC----CCCCCCcEEEEEecccccccchhcccccC----CCc-cC-
Q 013675 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY----GLAPKGTSVVLYRNREIRKHQFVAVTEWS----GGL-YV- 381 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~----~~~p~g~g~l~~r~~~~~~~~~~~~~~~~----g~~-~~- 381 (438)
..| . + ......++|+++.++||| .++++|+|+++++++...... .....|. +.. +.
T Consensus 244 ~~g----------~-~--~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~ 309 (447)
T PRK00451 244 SLG----------L-L--KPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMP-GRLVGETVDADGKRGFVL 309 (447)
T ss_pred Hhc----------c-C--CCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCC-CCEeeeecccCCCeeeEe
Confidence 221 1 1 112456899999999997 244558999887754332211 0001110 000 00
Q ss_pred --------CCCccCCCC-C----chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 382 --------SPTVAGSRP-G----GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 382 --------~~~~~gsr~-~----~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.....++.. + ....+.+++++.++.+|++++.+++.++++++.++|++++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~ 376 (447)
T PRK00451 310 TLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL 376 (447)
T ss_pred eccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe
Confidence 000011111 1 11134445667789999999999999999999999999988765
No 24
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.96 E-value=5.8e-27 Score=255.13 Aligned_cols=297 Identities=18% Similarity=0.204 Sum_probs=221.6
Q ss_pred CCc-HHHHHHHHHHhCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHHHHHHH
Q 013675 107 GLG-VGVIEKLKEEKGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVIAMTAA 182 (438)
Q Consensus 107 g~~-~~i~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~~~~a~ 182 (438)
-.| .|++++++++..++.... + -+.|+++...++ ......-....|....|+++ +.+++..+++.++++|+++
T Consensus 477 ~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p---~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~e 553 (954)
T PRK05367 477 YHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNA---AAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAE 553 (954)
T ss_pred CCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCH---HHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 458 899999999977666543 3 347777666665 33333333455667788998 8999999999999999999
Q ss_pred HhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCcc
Q 013675 183 LLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRA 261 (438)
Q Consensus 183 l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~ 261 (438)
++|++.. ....+||++|+..++.++|.+.. .+|. .+++|++|..+|.+..+++...|++++.+|+++++.+
T Consensus 554 ltG~d~~-------sl~~~~ga~ge~agL~a~r~~~~-~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~i 625 (954)
T PRK05367 554 ITGYDAV-------SLQPNAGAQGEYAGLLAIRAYHE-SRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNI 625 (954)
T ss_pred HHCCCCE-------EECccHHHHHHHHHHHHHHHHhh-ccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCc
Confidence 9999842 25567888988888888776433 2453 3467999999999999999999999999999989999
Q ss_pred CHHHHHHhhcc---CcEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc
Q 013675 262 DVKAIKKYINR---NTVLIVGSAPGFPHGI-IDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337 (438)
Q Consensus 262 d~~~Le~~I~~---~t~~vv~~~~~~~tG~-iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv 337 (438)
|+++|++++++ ++++|++++|++. |. .+|+++|+++||++|+++|||+|+.+..+++ .+....|+
T Consensus 626 D~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l----------~~pg~~GA 694 (954)
T PRK05367 626 DLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGL----------ARPGDIGA 694 (954)
T ss_pred CHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCC----------CChhhcCC
Confidence 99999999975 4789999999985 55 4899999999999999999999986554431 12346789
Q ss_pred cEEEeCCCCCCCCCC-----CcEEEEEecccccccchhcccccCCCccCC----CCccCCCCC--chHHHHHHHHHHHcH
Q 013675 338 TSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQFVAVTEWSGGLYVS----PTVAGSRPG--GLIAGAWAALMSLGQ 406 (438)
Q Consensus 338 dsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~----~~~~gsr~~--~~ia~~~aal~~~g~ 406 (438)
|++++++|||++.|. |+|++.+++. +... .+.+..+.... .....+..+ ..+...|+.++.+|.
T Consensus 695 Di~~~s~HK~f~~P~G~GGPg~G~l~vr~~-l~p~----lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~ 769 (954)
T PRK05367 695 DVSHLNLHKTFCIPHGGGGPGVGPIGVKAH-LAPF----LPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGA 769 (954)
T ss_pred CEEEecCcccCCCCcCCCCCceEEEeeccc-cccc----CCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCH
Confidence 999999999975554 4669888742 2211 11221100000 011111111 123357888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+|+++..++.+.+|+|++++|++.
T Consensus 770 ~Glr~~a~~~~~~A~Yl~~~L~~~ 793 (954)
T PRK05367 770 EGLRQATEVAILNANYIAKRLKDH 793 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999774
No 25
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.96 E-value=4.7e-27 Score=238.06 Aligned_cols=239 Identities=21% Similarity=0.269 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh---hc
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ---YF 246 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~---~~ 246 (438)
.+..+++++.+++++|.++++ + ++|+|+|+++.+++.++.... ..+| ++|+++..+|+++..++. ..
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~----v--~~~~g~t~a~~~~l~~l~~~~-~~~g---~~Vi~~~~~h~s~~~~~~~~~~~ 115 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSRE----I--VFTSGATESNNLAIKGIAHFY-KSKG---NHIITSKTEHKAVLDTCRYLERE 115 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhh-cCCC---CEEEECCCccHHHHHHHHHHHhc
Confidence 456778899999999998765 6 999999999999988875321 1255 899999999999776654 45
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP 326 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~ 326 (438)
|++++.+|+++++.+|+++++++++++|+++++++++|++|.+.|+++|.++|+++|+++|||++++.+..
T Consensus 116 g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~--------- 186 (402)
T TIGR02006 116 GFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI--------- 186 (402)
T ss_pred CCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc---------
Confidence 99999999998899999999999999999999999999999999999999999999999999999764433
Q ss_pred CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
+++....++|++++++||+ ++|+|+|+++++++....... .+.++........|+.+...++++..+++.+ .
T Consensus 187 --~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~----~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~ 258 (402)
T TIGR02006 187 --PINVNELKVDLMSISGHKI-YGPKGIGALYVRRKPRVRLEA----LIHGGGHERGMRSGTLPTHQIVGMGEAFRIA-K 258 (402)
T ss_pred --ccCccccCCCEEEEehhhh-cCCCceEEEEEccCCCCCCCc----eecCCCccCCccCCCccHHHHHHHHHHHHHH-H
Confidence 3566677899999999997 789999999998764432211 1222222112234556666677888888765 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++++++.++..++++++.+.|+++|++++
T Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~ 287 (402)
T TIGR02006 259 EEMAQDTAHVLALRDRLLNGIKSIEEVYL 287 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 57888899999999999999999888754
No 26
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.96 E-value=8.9e-27 Score=231.99 Aligned_cols=244 Identities=23% Similarity=0.227 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA--- 243 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~--- 243 (438)
....+..+++++.+++++|.++++ + ++|+|+|+++..++.++..... .+| +++|+++...|+++....
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~~----v--~~~~g~t~a~~~~l~~l~~~~~-~~g--~~~vi~~~~~~~s~~~~~~~~ 108 (353)
T TIGR03235 38 HNAKKAVERARKQVAEALGADTEE----V--IFTSGATESNNLAILGLARAGE-QKG--KKHIITSAIEHPAVLEPIRAL 108 (353)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCCHHHHHHHHHHHHHHhcc-cCC--CCeeeEcccccHHHHHHHHHH
Confidence 345567788999999999998765 6 8999999999999988764211 122 267999999999876554
Q ss_pred hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
+..|++++.+|+++++.+|+++++++++++|++|++++++|++|.+.|+++|.++|+++|+++|||++++.+..
T Consensus 109 ~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~------ 182 (353)
T TIGR03235 109 ERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI------ 182 (353)
T ss_pred HhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc------
Confidence 44699999999988899999999999999999999999999999999999999999999999999999764433
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~ 403 (438)
+++....++|++++++||| ++|+|+|+++++++...... ..+.+.++........|+.+...++++.++++.
T Consensus 183 -----~~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 254 (353)
T TIGR03235 183 -----TVDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGKPKAP--LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI 254 (353)
T ss_pred -----cccccccCCCEEEeehhhc-CCCCceEEEEEccCcccccc--cCceeeCCCCcCccccCCCChHHHHHHHHHHHH
Confidence 4666777899999999999 79999999999876332111 111122222222233566666778888888886
Q ss_pred HcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 404 LGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+ .++.+++.++..++++++++.|++ +|+++
T Consensus 255 ~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~ 284 (353)
T TIGR03235 255 A-RRNAQAWEVKLRAMRNQLRDALQT-LGVKL 284 (353)
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEE
Confidence 5 468889999999999999999988 67764
No 27
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.96 E-value=4.5e-27 Score=238.56 Aligned_cols=244 Identities=19% Similarity=0.213 Sum_probs=196.0
Q ss_pred cchhHHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675 165 IFQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y 239 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~ 239 (438)
..+...+..+++++.+++++|. ++++ + ++|+|+|+++..++.++... ..++| ++|+++...|++ +
T Consensus 61 ~~~~~~~~~~~~r~~la~~~~~~~~~~----v--~~t~g~t~~l~~~~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~ 130 (406)
T PRK09295 61 LSAQATEKMENVRKQAALFINARSAEE----L--VFVRGTTEGINLVANSWGNS-NVRAG---DNIIISEMEHHANIVPW 130 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCCCe----E--EEeCCHHHHHHHHHHHhhhh-cCCCc---CEEEECcchhhHHHHHH
Confidence 3555677788899999999998 4454 6 89999999999988876321 11356 899999999876 4
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
...++..|++++.+|+++++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..
T Consensus 131 ~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~-- 208 (406)
T PRK09295 131 QMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH-- 208 (406)
T ss_pred HHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc--
Confidence 566778899999999988899999999999999999999999999999999999999999999999999999864332
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc-------------c---CCC
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-------------Y---VSP 383 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-------------~---~~~ 383 (438)
+++....++|++++++||+ ++|.|+|+++++++. .+.. +.+.++. + ...
T Consensus 209 ---------~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~-~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~r 273 (406)
T PRK09295 209 ---------PVDVQALDCDFYVFSGHKL-YGPTGIGILYVKEAL-LQEM----PPWEGGGSMIATVSLTEGTTWAKAPWR 273 (406)
T ss_pred ---------ccCchhcCCCEEEeehhhc-cCCCCcEEEEEchHh-HhhC----CCcccCCceeeeeecCCccccCCchhh
Confidence 4566677899999999995 899999998887543 2221 1111110 0 011
Q ss_pred CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
...|+.+...++++.++++.+.+.|++++.++..++++++.+.|++++++++
T Consensus 274 ~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~ 325 (406)
T PRK09295 274 FEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL 325 (406)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 2346677777889999999988889999999999999999999999988765
No 28
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.96 E-value=1e-26 Score=233.38 Aligned_cols=240 Identities=25% Similarity=0.249 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHh
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQ 244 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~ 244 (438)
..+...++++++++++|.++.+ ++ ++|+|+|+++.+++.+.. ++| ++|+++..+|+++. ..++
T Consensus 42 ~~~~~~~~~~~la~~~~~~~~~---~v--~~~~g~t~al~~~~~~~~-----~~g---d~vl~~~~~~~~~~~~~~~~~~ 108 (376)
T TIGR01977 42 ASREVEETRQLLAKLFNAPSSA---HV--VFTNNATTALNIALKGLL-----KEG---DHVITTPMEHNSVARPLECLKE 108 (376)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---eE--EEeCCHHHHHHHHHHhcc-----CCC---CEEEECcchhhHHHHHHHHHHH
Confidence 4466778899999999997542 15 899999999999888753 256 89999999998864 4566
Q ss_pred hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
.+|++++.++.++++.+|+++++++++++|+++++++++|+||.+.|+++|.++|+++|+++++|++++.+..
T Consensus 109 ~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~------- 181 (376)
T TIGR01977 109 QIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVI------- 181 (376)
T ss_pred HcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCcc-------
Confidence 6799999999988888999999999999999999999999999999999999999999999999999865443
Q ss_pred CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC--cc-------CCCCccCCCCCchHH
Q 013675 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG--LY-------VSPTVAGSRPGGLIA 395 (438)
Q Consensus 325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~--~~-------~~~~~~gsr~~~~ia 395 (438)
+++....++|++++++|||+++|.|+|+++++++..... +. ..|.+. .+ ......|+.+...++
T Consensus 182 ----~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~ 254 (376)
T TIGR01977 182 ----PIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP-LK--SGGTGSHSALIDQPSELPDRFESGTLNTPGIA 254 (376)
T ss_pred ----CCCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCc-ee--cCCCccccccccccccchhhccCCCCCHHHHH
Confidence 456677899999999999999999999999887652111 10 111110 00 011123556666788
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++.++++.+.+.|++.+.++..++++++.+.|++++++++
T Consensus 255 a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~ 294 (376)
T TIGR01977 255 GLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKI 294 (376)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999999999999999999999999999999998888764
No 29
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.95 E-value=1.1e-26 Score=234.96 Aligned_cols=244 Identities=21% Similarity=0.220 Sum_probs=193.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675 165 IFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y 239 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~ 239 (438)
..+...+..+++++.+++++|.+ +++ + ++|+|+|+++.+++.++... ..++| ++|+++.++|++ +
T Consensus 54 ~~~~~~~~~~~~r~~la~~~g~~~~~~----i--~~t~g~t~~l~~~~~~~~~~-~~~~g---d~Vl~~~~~~~s~~~~~ 123 (398)
T TIGR03392 54 QAQSLTARYELARQQVARFLNAPDAEN----I--VWTRGTTESINLVAQSYARP-RLQPG---DEIIVSEAEHHANLIPW 123 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCChHHHHHHHHHHhhhc-cCCCC---CEEEECCcchhHHHHHH
Confidence 34445667788999999999995 444 6 89999999999999887420 01256 899999999987 4
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
...++..|++++.+|+++++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..
T Consensus 124 ~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-- 201 (398)
T TIGR03392 124 LMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-- 201 (398)
T ss_pred HHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC--
Confidence 567788899999999988888999999999999999999999999999999999999999999999999999864332
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----------c-----CCCC
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----------Y-----VSPT 384 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----------~-----~~~~ 384 (438)
+++....++|++++++||+ ++|.|+|+++.+++ ..+.. ..|.++. + ....
T Consensus 202 ---------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
T TIGR03392 202 ---------PPDVQALDIDFYAFSGHKL-YGPTGIGVLYGKTE-LLEAM----PPWQGGGKMLSHVSFDGFIPQAVPHRF 266 (398)
T ss_pred ---------CCChhhcCCCEEEEecccc-cCCCceEEEEEcHH-HHhhC----CCeecCCceEeeccccccccCCChhhc
Confidence 3455556799999999995 79999999877654 32221 1122110 0 0111
Q ss_pred ccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 385 ~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..|+.+...++++.++++.+...|++++.++..++++++.+.|+++|++++
T Consensus 267 e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~ 317 (398)
T TIGR03392 267 EAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRS 317 (398)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 245666667889999999888888999999999999999999999988764
No 30
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.95 E-value=1.6e-26 Score=231.67 Aligned_cols=248 Identities=21% Similarity=0.196 Sum_probs=193.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH---
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--- 239 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--- 239 (438)
..++...+...++++.+++++|.+ +.+ + ++|+|+|+++.+++.++.... .+| ++|+++..+|++.
T Consensus 36 ~~~~~~~~~~~~~~~~la~~~~~~~~~~----v--~~~~g~t~a~~~~~~~l~~~~--~~g---~~vl~~~~~~~~~~~~ 104 (373)
T cd06453 36 ELSARATDAYEAAREKVARFINAPSPDE----I--IFTRNTTEAINLVAYGLGRAN--KPG---DEIVTSVMEHHSNIVP 104 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCe----E--EEeCCHHHHHHHHHHHhhhcC--CCC---CEEEECcchhHHHHHH
Confidence 345667778888999999999998 443 4 899999999999999876310 145 8999999999984
Q ss_pred -HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 240 -DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 240 -~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
...++..|++++.||++.++.+|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+..
T Consensus 105 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~- 183 (373)
T cd06453 105 WQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM- 183 (373)
T ss_pred HHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-
Confidence 456678899999999988899999999999999999999999999999999999999999999999999999864443
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC--------CCccCC---CCccC
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS--------GGLYVS---PTVAG 387 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~--------g~~~~~---~~~~g 387 (438)
++++...++|++++++|||+ +++|+|+++.+++.+..... ....|. ...+.. ....|
T Consensus 184 ----------~~~~~~~~~d~~~~s~~K~~-~~~g~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
T cd06453 184 ----------PVDVQDLGCDFLAFSGHKML-GPTGIGVLYGKEELLEEMPP-YGGGGEMIEEVSFEETTYADLPHKFEAG 251 (373)
T ss_pred ----------eeeccccCCCEEEecccccc-CCCCcEEEEEchHHhhcCCC-eecCCCccccccccccccCCCccccCCC
Confidence 24455668999999999995 55889988877543322211 110110 000000 01124
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+.+...+++++++++.+...|++++.++..++++++.+.|+++|++++
T Consensus 252 t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~ 299 (373)
T cd06453 252 TPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV 299 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 455556778999999998889999999999999999999999988765
No 31
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.95 E-value=2.1e-26 Score=231.47 Aligned_cols=240 Identities=26% Similarity=0.273 Sum_probs=190.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh-
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ- 244 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~- 244 (438)
++...+..+++++++++++|.++++ + ++|+|+|+++.+++.++.... .+| ++|+++..+|+++...+.
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~~----i--~~t~~~t~a~~~al~~~~~~~--~~~---~~vv~~~~~~~s~~~~~~~ 105 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPDE----I--IFTSGGTESDNTAIKSALAAQ--PEK---RHIITTAVEHPAVLSLCQH 105 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCcHHHHHHHHHHHHHHhc--CCC---CeEEEcccccHHHHHHHHH
Confidence 3556777889999999999998765 6 899999999999998875321 133 789999999998765444
Q ss_pred --hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 245 --YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 245 --~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
..|++++.+|+++++.+|+++++++++++|+++++++++|++|.+.|+++|+++|+++|+++|+|++++.+..
T Consensus 106 ~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~----- 180 (379)
T TIGR03402 106 LEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI----- 180 (379)
T ss_pred HHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccccc-----
Confidence 3599999999988889999999999999999999999999999999999999999999999999999764332
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
+++....++|++++++||+ ++|.|+|+++++++.. ..+.+.|+........|+.....++++.++++
T Consensus 181 ------~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~v~~~~~------~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~ 247 (379)
T TIGR03402 181 ------PIDLKEMNIDMLSLSGHKL-HGPKGVGALYIRKGTR------FRPLLRGGHQERGRRAGTENVPGIVGLGKAAE 247 (379)
T ss_pred ------ccCcccCCCCEEEEcHHHc-CCCCceEEEEECCCCC------CCCcccCCccCCCcCCCCccHHHHHHHHHHHH
Confidence 4677778999999999994 8999999999986431 11222222211112234444455777778886
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP 435 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~ 435 (438)
.. .+++++..++..++++++.+.|++ +|++++
T Consensus 248 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 280 (379)
T TIGR03402 248 LA-TEHLEEENTRVRALRDRLEAGLLARIPDARL 280 (379)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 55 557888889999999999999986 887764
No 32
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.95 E-value=2.1e-26 Score=233.25 Aligned_cols=243 Identities=22% Similarity=0.233 Sum_probs=193.2
Q ss_pred chhHHHHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HH
Q 013675 166 FQSVARFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YD 240 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~ 240 (438)
.....+..+++++.+++++|. ++++ | ++|+|+|+++.+++.++... ..++| ++|+++.+.|++ +.
T Consensus 58 ~~~~~~~~~~~r~~la~~~g~~~~~~----i--~~~~~~t~~i~~~~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~~ 127 (401)
T PRK10874 58 AQRLTARYEAAREQVAQLLNAPDAKN----I--VWTRGTTESINLVAQSYARP-RLQPG---DEIIVSEAEHHANLVPWL 127 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCE----E--EEECCHHHHHHHHHHHhhhc-cCCCc---CEEEECCcchHHHHHHHH
Confidence 345667788899999999999 5554 6 89999999999999887420 01356 899999999976 55
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
..++..|++++.+|++.++.+|+++++++++++|++|++++++|+||.+.|+++|+++|+++|+++++|++++.+..
T Consensus 128 ~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~--- 204 (401)
T PRK10874 128 MVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF--- 204 (401)
T ss_pred HHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccc---
Confidence 67788899999999988889999999999999999999999999999999999999999999999999999864332
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----------c-----CCCCc
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----------Y-----VSPTV 385 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----------~-----~~~~~ 385 (438)
+++....++|++++++||+ ++|.|+|+++.+++ ..+.. ..|.++. + .....
T Consensus 205 --------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e 270 (401)
T PRK10874 205 --------PADVQALDIDFYAFSGHKL-YGPTGIGVLYGKSE-LLEAM----SPWQGGGKMLTEVSFDGFTPQSAPWRFE 270 (401)
T ss_pred --------cCCchhcCCCEEEEecccc-cCCCccEEEEEchH-HHhcC----CCeecCCcceEeeccCccCCCCChhhcc
Confidence 2455566799999999995 89999999887654 33221 1111110 0 01112
Q ss_pred cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.|+.+...++++.+++..+...|+.++.+++.++++++.+.|+++||+++
T Consensus 271 ~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 271 AGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred CCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 35555566788999999888888999999999999999999999988764
No 33
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.95 E-value=1e-26 Score=226.28 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=189.9
Q ss_pred HHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC
Q 013675 145 FSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224 (438)
Q Consensus 145 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~ 224 (438)
.+.+.+++.. ...||.....+-......++.++.+|+|+|+++.+ | +||+|+|||+.++++........ +
T Consensus 60 ldam~~~~~~-~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d----I--iFts~ATEs~Nlvl~~v~~~~~~--~- 129 (428)
T KOG1549|consen 60 LDAMLPYLLE-YLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD----I--VFTSGATESNNLVLKGVARFFGD--K- 129 (428)
T ss_pred HHHHHHHHHH-hhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc----E--EEeCCchHHHHHHHHHhhccccc--c-
Confidence 3444555543 35566554112222333557899999999999987 7 99999999999999997643221 1
Q ss_pred CCCeEEecCCCcCcHHHHHhhc---CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH
Q 013675 225 TRPEMIIPVSAHSAYDKAAQYF---NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301 (438)
Q Consensus 225 ~~~~Viv~~~~h~s~~~a~~~~---Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~ 301 (438)
.+.+||+...+|++....++.+ |++++.+|++.++..|++.+++.|+++|++|.+.+.||..|++.|+++|.++|++
T Consensus 130 ~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~ 209 (428)
T KOG1549|consen 130 TKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICRE 209 (428)
T ss_pred ccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCc
Confidence 1238999999999999888877 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (438)
Q Consensus 302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 381 (438)
+|+.+|+|+|+ +.|+ + ++|....++|++++++||| ++|+|+|++++|.+.. .....+.+.||...
T Consensus 210 ~~v~v~~DaAQ---------avG~-i-~vDV~eln~D~~s~s~HK~-ygp~~iGaLYvr~~~~---~~~~~p~~~GGgq~ 274 (428)
T KOG1549|consen 210 EGVQVHVDAAQ---------AVGK-I-PVDVQELNADFLSISAHKI-YGPPGIGALYVRRKRP---RLRVEPPLSGGGQE 274 (428)
T ss_pred CCcEEEeehhh---------hcCC-c-cccHHHcCchheeeecccc-cCCCcceEEEEccCCC---cccccCcccCCccc
Confidence 99999999995 4554 4 5899999999999999999 8888899999986221 12233445555433
Q ss_pred CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427 (438)
Q Consensus 382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L 427 (438)
...-.|++....+.++-.+.+...++ +.-....+.++...+..++
T Consensus 275 r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~~~~~~~~~~~~ll~~i 319 (428)
T KOG1549|consen 275 RGLRSGTVATPLAVGLGSAAEFVNKE-MAYDEAIIKRLSEKLLMGI 319 (428)
T ss_pred cccccCCcCchhhhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Confidence 33344555555666777777655332 1111222223555555554
No 34
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.95 E-value=4.4e-26 Score=231.03 Aligned_cols=247 Identities=21% Similarity=0.177 Sum_probs=192.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----H
Q 013675 166 FQSVARFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----D 240 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~ 240 (438)
.+...+..+++++.+++++|.+ +++ + ++|+|+|+++.+++.++... ...+| ++|+++.+.|++. .
T Consensus 57 ~~~~~~~~~~~r~~ia~~~~~~~~~~----v--~~~~g~t~~l~~~~~~~~~~-~~~~g---~~vl~~~~~~~s~~~~~~ 126 (403)
T TIGR01979 57 SVRATEAYEAVREKVAKFINAASDEE----I--VFTRGTTESINLVAYSWGDS-NLKAG---DEIVISEMEHHANIVPWQ 126 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCe----E--EEeCCHHHHHHHHHHHhhhh-cCCCC---CEEEECcchhhHHHHHHH
Confidence 3445566778999999999998 444 5 89999999999988876421 11256 8999999999873 4
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
+.++..|++++.+|+++++.+|+++++++++++|++|++++++|++|.+.|+++|+++|+++|+++|+|++++.+..
T Consensus 127 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~--- 203 (403)
T TIGR01979 127 LLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM--- 203 (403)
T ss_pred HHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCcc---
Confidence 66778899999999998899999999999999999999999999999999999999999999999999999864433
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--------CccC---CCCccCCC
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--------GLYV---SPTVAGSR 389 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--------~~~~---~~~~~gsr 389 (438)
+++....++|++++++||+ ++|.|+|+++++++ ...........|.. ..+. .....|+.
T Consensus 204 --------~~~~~~~~~d~~~~s~~K~-~gp~G~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~ 273 (403)
T TIGR01979 204 --------PVDVQALDCDFYVFSGHKM-YGPTGIGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTP 273 (403)
T ss_pred --------ccCccccCCCEEEEecccc-cCCCCceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCc
Confidence 3556667899999999997 68999999888754 32211111001100 0000 01123555
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+...+++++++++.+...|++++.+++.++++++.+.|++++++++
T Consensus 274 ~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~ 319 (403)
T TIGR01979 274 NIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRI 319 (403)
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5566788899998887778899999999999999999999888765
No 35
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.95 E-value=3.4e-26 Score=229.34 Aligned_cols=249 Identities=22% Similarity=0.206 Sum_probs=200.0
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD- 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~- 240 (438)
+..+....++.+++++.+++++|+++ .+ + ++++|+|+++..++.++... .++| ++|++....|++..
T Consensus 35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~~----v--~~~~~~t~a~~~~~~~l~~~--~~~g---~~vl~~~~~~~s~~~ 103 (371)
T PF00266_consen 35 SHRSREFAEILEEAREALAKLLGAPPDEE----V--VFTSNGTEALNAVASSLLNP--LKPG---DEVLVTSNEHPSNRY 103 (371)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHTSSTTEE----E--EEESSHHHHHHHHHHHHHHH--GTTT---CEEEEEESSHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCccccc----c--ccccccchhhhhhhhccccc--cccc---ccccccccccccccc
Confidence 44556678888899999999999998 54 6 89999999999999998643 2356 89999999999865
Q ss_pred ---HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 241 ---KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 241 ---~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
..++..|++++.+|.+.++.+|+++++++|+++|++|++++.++.+|.+.|+++|+++||++|+++++|++++.+.+
T Consensus 104 ~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~ 183 (371)
T PF00266_consen 104 PWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV 183 (371)
T ss_dssp HHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS
T ss_pred ccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccc
Confidence 45567799999999988899999999999999999999999999999999999999999999999999999764433
Q ss_pred hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC-----------ccCCCCcc
Q 013675 318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG-----------LYVSPTVA 386 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~-----------~~~~~~~~ 386 (438)
++|+...++|++++++|| +++|+|+|++++|++...+. ......|... ........
T Consensus 184 -----------~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (371)
T PF00266_consen 184 -----------PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERL-RPAKPGGGYLDFPSLQEYGLADDARRFEG 250 (371)
T ss_dssp -----------S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHH-HTSSSSSSTTTHHHHHHHCHHSTTTGSSS
T ss_pred -----------cccccccccceeeecccc-cCCCCchhhheehhhhhhcc-ccccccccccccccchhcccccccccccc
Confidence 578888999999999999 79999999999997543322 1111122100 00011123
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
|+.+...++++..+++.+.+.|++++.++..++++++.+.|+++|++++
T Consensus 251 GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~ 299 (371)
T PF00266_consen 251 GTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEV 299 (371)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred cceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeE
Confidence 5666666788899999998899999999999999999999999988775
No 36
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.95 E-value=1.9e-25 Score=242.21 Aligned_cols=303 Identities=15% Similarity=0.155 Sum_probs=232.4
Q ss_pred CCCCCCCC--CCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHH
Q 013675 98 GWWTELPR--AGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVAR 171 (438)
Q Consensus 98 ~~~~~lP~--~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~ 171 (438)
..++.+|+ +-.| .++++++.++.+++.... -...|.+.+..++ -.++..-.+..|.+-.|+.+ +..+|..+
T Consensus 492 ~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~~plgsctmk~n~---~~~~~~~~~~~~~~~hp~~p~~~~~g~~~ 568 (993)
T PLN02414 492 SPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNA---TTEMMPVTWPEFANIHPFAPVDQAQGYQE 568 (993)
T ss_pred CccccCcccccccCHHHHHHHHHHHhhcccccccCCccCcccccccCc---hhhhhhhcCcchhhcCCCCCHHHHHHHHH
Confidence 33445564 4468 999999999966665544 3567888887776 44444445556777778876 56799999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChH----HHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhc
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT----ESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt----~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
+..++++++++++|++ . + ++++++| +|++++++++.+ .+|- .+++|++|..+|.+....+...
T Consensus 569 ~~~~~r~~la~i~g~~--~----v--~f~pnaga~ge~a~~~vi~~~~~----~~Gd~~r~~vli~~~aH~sn~a~a~~~ 636 (993)
T PLN02414 569 MFEDLGDLLCEITGFD--S----F--SLQPNAGAAGEYAGLMVIRAYHL----SRGDHHRNVCIIPVSAHGTNPASAAMC 636 (993)
T ss_pred HHHHHHHHHHHHhCCC--e----E--EEcCCCcHHHHHHHHHHHHHHHh----ccCCCCCCEEEeCCCcCccCHHHHHHC
Confidence 9999999999999994 2 5 8999998 899999998853 2352 3458999999999999999999
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
|++++.||+|++|.+|+++|+++|++ +|++|++++|+|..|..+|+++|+++||++|+.++||+++.....
T Consensus 637 G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~------ 710 (993)
T PLN02414 637 GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQV------ 710 (993)
T ss_pred CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhcc------
Confidence 99999999999999999999999994 789999999999999999999999999999999999999743221
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCC-----CCcEEEEEecccccccchhcccccCC---CccC---CCCccCCCCC-
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTEWSG---GLYV---SPTVAGSRPG- 391 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~~~g---~~~~---~~~~~gsr~~- 391 (438)
...+....|+|+++++.||++++| +|+|++.++.+ +... .+.|.- +.+. .....|++..
T Consensus 711 ----~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p~----lPg~~v~~~~~~~~r~~~s~iGt~~~a 781 (993)
T PLN02414 711 ----GLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPF----LPSHPVVPTGGIPRPEKTQPLGTISAA 781 (993)
T ss_pred ----CcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hccc----CCCCccccCCCcccccCCCCcCCccch
Confidence 134456789999999999987655 45999888753 2221 222210 0011 1122355443
Q ss_pred -----chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 392 -----GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 392 -----~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+...|+-++.+|.+|+++..++...+++|++++|++.
T Consensus 782 ~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~ 825 (993)
T PLN02414 782 PWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH 825 (993)
T ss_pred hhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223456777788999999999999999999999999874
No 37
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.95 E-value=1.8e-25 Score=224.94 Aligned_cols=237 Identities=19% Similarity=0.222 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH---hhcC
Q 013675 172 FEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA---QYFN 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~---~~~G 247 (438)
..++.++.+++.+|+ ++++ + ++|+|+|+++.++++++......++| +++|+++...|+++...+ +..|
T Consensus 43 ~l~~a~~~~~~~~~~~~~~~----i--~~t~g~teal~~~~~~~~~~~~~~~~--~~~vi~~~~e~ps~~~~~~~~~~~G 114 (382)
T TIGR03403 43 AIAEALDKLYKGINARDLDD----I--IITSCATESNNWVLKGVYFDEILKGG--KNHIITTEVEHPAVRATCAFLESLG 114 (382)
T ss_pred HHHHHHHHHHHHcCcCCCCe----E--EEeCCHHHHHHHHHHHHHHhhcccCC--CCEEEEcCCccHHHHHHHHHHHHCC
Confidence 344455566667776 4454 6 89999999999999886421110122 268999999999877654 4569
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~ 327 (438)
++++.+|+++++.+|+++++++++++|+++++++++||||.+.|+++|.++|+++|+++|+|++++.+..
T Consensus 115 ~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~---------- 184 (382)
T TIGR03403 115 VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI---------- 184 (382)
T ss_pred CEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC----------
Confidence 9999999998899999999999999999999999999999999999999999999999999999763322
Q ss_pred CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
+++....++|++++++||| ++|+|+|++++|+... ..+.+.|+........|+.+...++++..+++.. .+
T Consensus 185 -~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~------~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~ 255 (382)
T TIGR03403 185 -PVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGVE------LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-NE 255 (382)
T ss_pred -ccCccccCCCEEEEcchhh-CCCCceEEEEECCCCC------CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHH-HH
Confidence 3667778999999999998 7999999999886531 1122223222222223444445566777787654 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.++...++..++++++.+.|+++|++++
T Consensus 256 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 283 (382)
T TIGR03403 256 YLDFEKSHVRRLRDRLEDALLELPDVFV 283 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5778888999999999999999888765
No 38
>PRK14012 cysteine desulfurase; Provisional
Probab=99.95 E-value=1.5e-25 Score=227.18 Aligned_cols=238 Identities=21% Similarity=0.258 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh---cC
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY---FN 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~---~G 247 (438)
+..+++++.+++++|.++++ + ++|+|+|+++.+++.++.... .++| ++|+++..+|+++..+++. .|
T Consensus 49 ~~~~~~r~~ia~~~g~~~~~----v--~~~~g~t~al~~~l~~l~~~~-~~~g---d~Vi~~~~~~~s~~~~~~~~~~~g 118 (404)
T PRK14012 49 EAVDIARNQIADLIGADPRE----I--VFTSGATESDNLAIKGAAHFY-QKKG---KHIITSKTEHKAVLDTCRQLEREG 118 (404)
T ss_pred HHHHHHHHHHHHHcCcCcCe----E--EEeCCHHHHHHHHHHHHHHhh-cCCC---CEEEEecCccHHHHHHHHHHHhCC
Confidence 45667888999999998765 5 899999999999998875321 1356 8999999999998666554 49
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~ 327 (438)
++++.+++++++.+|+++++++|+++|++|++++++|+||.+.|+++|.++|+++|+++|+|++++.+..
T Consensus 119 ~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~---------- 188 (404)
T PRK14012 119 FEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV---------- 188 (404)
T ss_pred CEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc----------
Confidence 9999999998999999999999999999999999999999999999999999999999999999764333
Q ss_pred CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 328 PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 328 p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
+++....++|++++++||+ ++|.|+|+++++++...+. .+.+.|+........|+.+...++++-+++... +.
T Consensus 189 -~~~~~~~~~D~~~~s~~K~-~gp~g~G~l~~~~~~~~~~----~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~ 261 (404)
T PRK14012 189 -PIDLSKLKVDLMSFSAHKI-YGPKGIGALYVRRKPRVRL----EAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KE 261 (404)
T ss_pred -ccCcccCCCCEEEEehhhc-cCCCceEEEEEecCCCCCC----CceecCCCccCCccCCCcCHHHHHHHHHHHHHH-Hh
Confidence 3455566899999999996 7899999999987643221 111222221111122344444455666666544 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+..+..++..++++++.+.|++++++++
T Consensus 262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~ 289 (404)
T PRK14012 262 EMATENERIRALRDRLWNGIKDIEEVYL 289 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 6778889999999999999998887654
No 39
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.95 E-value=1.1e-25 Score=229.74 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHH
Q 013675 167 QSVARFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDK 241 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~ 241 (438)
....+..+++++.+++++|.++ ++ + ++|+|+|+++..++.++... ..++| ++|+++...|++ +..
T Consensus 72 ~~~~~~~~~~r~~la~~~~~~~~~~----v--~~t~g~t~al~~i~~~~~~~-~~~~g---d~vl~~~~~~~s~~~~~~~ 141 (424)
T PLN02855 72 AKATDAYELARKKVAAFINASTSRE----I--VFTRNATEAINLVAYTWGLA-NLKPG---DEVILSVAEHHSNIVPWQL 141 (424)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCE----E--EEeCCHHHHHHHHHHHhhhh-cCCCc---CEEEECCCccHHHHHHHHH
Confidence 3345566788999999999964 44 6 89999999999988764210 11356 899999999986 455
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.++..|++++.+|+++++.+|+++++++|+++|++|++++++|+||.+.|+++|+++|+++|+++++|++++....
T Consensus 142 ~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~---- 217 (424)
T PLN02855 142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM---- 217 (424)
T ss_pred HHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc----
Confidence 6677899999999988778999999999999999999999999999999999999999999999999999753222
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--------CccC---CCCccCCCC
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--------GLYV---SPTVAGSRP 390 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--------~~~~---~~~~~gsr~ 390 (438)
+++....++|++++++||+ ++|.|+|+++++++.+ +........|.. ..+. .....|+.+
T Consensus 218 -------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~ 288 (424)
T PLN02855 218 -------PVDVQTLGADFLVASSHKM-CGPTGIGFLWGKSDLL-ESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPA 288 (424)
T ss_pred -------CCCchhcCCCEEEeecccc-cCCCccEEEEEchhhh-hcCCCEecCCCceeeeecCccccCCChhhccCCChH
Confidence 4666777899999999996 8999999988875432 221111001100 0000 112245666
Q ss_pred CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
...++++.++++.+...|++++.+++.++++++++.|+++|++++
T Consensus 289 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i 333 (424)
T PLN02855 289 IGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRI 333 (424)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 667889999999888889999999999999999999999988765
No 40
>PRK02948 cysteine desulfurase; Provisional
Probab=99.94 E-value=1.6e-24 Score=218.09 Aligned_cols=237 Identities=23% Similarity=0.252 Sum_probs=185.0
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-- 242 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-- 242 (438)
.......+.+++++.+++++|.++++ + ++|+|+|+++..++.++.... .++| ++|+++...|+++...
T Consensus 37 ~~~~~~~~~~~~r~~la~~~g~~~~~----i--~~~~g~t~a~~~~~~~~~~~~-~~~g---~~vv~~~~~h~s~~~~~~ 106 (381)
T PRK02948 37 IGGTASSLLQVCRKTFAEMIGGEEQG----I--YFTSGGTESNYLAIQSLLNAL-PQNK---KHIITTPMEHASIHSYFQ 106 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCe----E--EEeCcHHHHHHHHHHHHHHhc-cCCC---CEEEECCcccHHHHHHHH
Confidence 34455677889999999999998765 6 899999999999998876321 1245 7899999999987654
Q ss_pred -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
++..|++++.+|+++++.+|++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.
T Consensus 107 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~------- 179 (381)
T PRK02948 107 SLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTF------- 179 (381)
T ss_pred HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhc-------
Confidence 455699999999988899999999999999999999999999999999999999999999999999988542
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal 401 (438)
|. . +++....++|+++.++||+ ++|.|+|+++++++..... ...++........|+.+...++++.+++
T Consensus 180 --g~-~-~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~~------~~~~~~~~~~~~~~t~~~~~~~a~~~al 248 (381)
T PRK02948 180 --GK-L-PIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQVRWKP------VFPGTTHEKGFRPGTVNVPGIAAFLTAA 248 (381)
T ss_pred --cc-c-ccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCCCCCCC------cccCCCCCCCcCCCCccHHHHHHHHHHH
Confidence 21 2 4566677899999999997 7899999988875421100 0111111111234455555677777888
Q ss_pred HHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 402 MSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+.+. ++.++..++..++++++.+.|+++
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 276 (381)
T PRK02948 249 ENIL-KNMQEESLRFKELRSYFLEQIQTL 276 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7653 567888999999999999999887
No 41
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.94 E-value=2.2e-24 Score=229.80 Aligned_cols=309 Identities=17% Similarity=0.161 Sum_probs=225.7
Q ss_pred CCCCCC--CCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHH
Q 013675 99 WWTELP--RAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARF 172 (438)
Q Consensus 99 ~~~~lP--~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~ 172 (438)
.+...| .++.| .|++++++++..++.... ..+.|.+.+.... ....+-.....|...+|+++ +.+++..++
T Consensus 468 ~~~~~p~f~~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~---~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~ 544 (954)
T PRK12566 468 AYLQHPVFNAHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNA---TSEMIPITWPEFAQLHPFAPREQAEGYRAM 544 (954)
T ss_pred ccccCcccccCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCc---HHhhhcccchhhhcCCCCCchhhhcCHHHH
Confidence 334455 46789 999999999966655433 3566665554444 33333334455667799998 999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
..++.+|+++++|++... +.-.+|+.+.+.++++.|.+... +|- .+++|+++...|.+....+...|++++
T Consensus 545 i~elq~~l~eLtGmd~~S-------l~p~sGA~gE~A~Lmair~yh~~-~Ge~~r~~vLIp~saHgtNpasa~~~GieVv 616 (954)
T PRK12566 545 IDELEAWLCAITGFDAIC-------MQPNSGAQGEYAGLLAIRRYHRS-RGQSQRDICLIPSSAHGTNPASAQMAGMRVV 616 (954)
T ss_pred HHHHHHHHHHHHCCCeEe-------ecCCchHHHHHHHHHHHHHHHHh-cCCCCCCEEEecccccccCHHHHHHCCCEEE
Confidence 999999999999998642 45558888888888888865543 343 367899999999887777888999999
Q ss_pred EeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 252 RVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 252 ~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
.||+|++|.+|+++|+++++ +++++|++++|++..+..+|+++|+++||++|+++++|+++.-...
T Consensus 617 ~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~----------- 685 (954)
T PRK12566 617 IVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQV----------- 685 (954)
T ss_pred EeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhcc-----------
Confidence 99999999999999999997 6899999999998666667799999999999999999999742111
Q ss_pred CCc-cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc-CCCCccCCCC------CchHHHHHHH
Q 013675 329 PFD-FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY-VSPTVAGSRP------GGLIAGAWAA 400 (438)
Q Consensus 329 ~~~-~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~gsr~------~~~ia~~~aa 400 (438)
.++ ....|+|++++++|||+++|.|.|...++.=..++......+.|++-.. ....-.|+.+ +..+...|+-
T Consensus 686 ~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Y 765 (954)
T PRK12566 686 GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMY 765 (954)
T ss_pred CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHH
Confidence 122 3678999999999999888888777655531222222223333443110 0000012221 1124466677
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++.+|.+ +.+..+....+++|++++|++.
T Consensus 766 i~~lG~e-Lk~aa~~ailnAnYla~rL~~~ 794 (954)
T PRK12566 766 IAMMGPQ-LADASEVAILSANYLANQLGGA 794 (954)
T ss_pred HHHHCHH-HHHHHHHHHHHHHHHHHHhHhh
Confidence 7778998 8888888999999999999764
No 42
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=99.93 E-value=2.6e-24 Score=213.37 Aligned_cols=321 Identities=18% Similarity=0.232 Sum_probs=198.0
Q ss_pred hhhHHHHHHHHhhhhhc-cccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675 73 VNKYIEAEKQKVVDKMQ-SGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN 149 (438)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (438)
+++|++....+.+++++ ..++++ +......||+. +| .|++++++++..++....++..++.|.+..| ..+.
T Consensus 11 ~~~ML~~iG~~sieeL~~~~IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P-----~~i~ 84 (429)
T PF02347_consen 11 IQEMLDAIGVKSIEELFDSDIPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKSYTSFIGAGSYTHYVP-----AVID 84 (429)
T ss_dssp HHHHHHHCT-SSTGGGG-TTS-GGG-SS-----------HHHHHHHHHHHHTTS--TTS---CTTT----------HHHH
T ss_pred HHHHHHhcCCCCHHHHhhhhCCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCccccccccCceeC-----hhhc
Confidence 45667777777889998 666654 34556788876 78 9999999999777666557776666665544 3333
Q ss_pred H-HH---HHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675 150 E-AC---SMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (438)
Q Consensus 150 ~-~~---~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~ 225 (438)
+ .+ +.+...+|++++.++|..++..+.+.+++++.|+|..+ . .+..|+|.+-..++++.|...+ +
T Consensus 85 ~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaN----a--Slyd~atA~aEa~~ma~r~~~~--~--- 153 (429)
T PF02347_consen 85 RNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVAN----A--SLYDGATAAAEAMLMAVRATKR--K--- 153 (429)
T ss_dssp H-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-----S--EBSSCCHHHHHHHHHHHHHHTT------
T ss_pred CccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccC----C--CCCChhHHHHHHHHHHHHhccc--C---
Confidence 3 22 22345689999999999999999999999999999765 3 6788888777777666664321 1
Q ss_pred CCeEEecCCCcCcHHHHHhh----cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH
Q 013675 226 RPEMIIPVSAHSAYDKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301 (438)
Q Consensus 226 ~~~Viv~~~~h~s~~~a~~~----~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~ 301 (438)
+.+|++|...|+....+++. .|++++.+|.++++..| ++++.+|++++||+ .|.++|+++|++++|+
T Consensus 154 ~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~ 224 (429)
T PF02347_consen 154 RNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHA 224 (429)
T ss_dssp --EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STTEEEEEEESS-T-TSB--THHHHHHHHHH
T ss_pred CcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccCeEEEEeecCCC-CceEeeHHHHHHHHHH
Confidence 26899999999999886655 48999999998877777 78899999999987 9999999999999999
Q ss_pred cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCC----CCCCCCcEEEEEecccccccchh---cccc
Q 013675 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY----GLAPKGTSVVLYRNREIRKHQFV---AVTE 374 (438)
Q Consensus 302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~----~~~p~g~g~l~~r~~~~~~~~~~---~~~~ 374 (438)
+|..+++ ++-- -+++. --.....|+|+++.+.+.+ ++|++++|++.++++-.+...-+ ...|
T Consensus 225 ~gal~~~-~ad~-------~aL~~---l~~Pge~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D 293 (429)
T PF02347_consen 225 AGALVIV-GADP-------NALGG---LKSPGEYGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD 293 (429)
T ss_dssp TT-EEEE-CGGC-------CGCCT---C--GGGGT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred cCCEEEE-ecCH-------HHHhC---cCChhhcCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence 9999887 5521 11221 1123556899997664444 36778899999998744432211 1112
Q ss_pred cCCCccC-----CCCccCCCCC---------chH-HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYV-----SPTVAGSRPG---------GLI-AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~-----~~~~~gsr~~---------~~i-a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
-.|.... +....-+|.. +++ ...++-+..+|.+|++++.+++..+|+|+++.|+++
T Consensus 294 ~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 294 ADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp CCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221100 1111111211 121 123334445999999999999999999999999987
No 43
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.93 E-value=1.9e-24 Score=218.64 Aligned_cols=246 Identities=18% Similarity=0.126 Sum_probs=189.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD---- 240 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~---- 240 (438)
...+..++.+++++.+++++|.++++ + ++++|+|+++..++.++... .++| ++|+++.+.|++..
T Consensus 54 ~~~~~~~~~~~l~~~ia~~~~~~~~~----v--~~~~~~t~~l~~~~~~~~~~--~~~g---d~vl~~~~~~~s~~~~~~ 122 (397)
T TIGR01976 54 SSRRADQVVDDAREAVADLLNADPPE----V--VFGANATSLTFLLSRAISRR--WGPG---DEVIVTRLDHEANISPWL 122 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCe----E--EEeCCHHHHHHHHHHHHHhc--CCCC---CEEEEcCCchHhHHHHHH
Confidence 34556677889999999999998765 6 89999999998877776321 1356 89999999998753
Q ss_pred HHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 241 KAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
..++..|++++.+++++ ++.+|+++++++++++|++|++++++|++|.+.|+++|+++|+++|+++++|+++....
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--- 199 (397)
T TIGR01976 123 QAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH--- 199 (397)
T ss_pred HHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc---
Confidence 56677899999999986 78999999999999999999999999999999999999999999999999999974221
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
. ++++...++|++++++||| ++|. +|+++.+++ ...........|...........|+++...++++.+
T Consensus 200 -------~-~~~~~~~~~d~~~~s~~K~-~g~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 268 (397)
T TIGR01976 200 -------G-LIDVQATGADFLTCSAYKF-FGPH-MGILWGRPE-LLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVA 268 (397)
T ss_pred -------c-CCCHHHcCCCEEEEechhh-cCCc-eEEEEEcHH-HHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHH
Confidence 1 3556667899999999999 5665 898887754 332221112223221111223357777777888888
Q ss_pred HHHHHcHHH--------------HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 400 ALMSLGQEG--------------YLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 400 al~~~g~~g--------------~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+++.+...| ++++.++..++++++.+.|++++++++
T Consensus 269 al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 318 (397)
T TIGR01976 269 AVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL 318 (397)
T ss_pred HHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 888775443 677788899999999999998877664
No 44
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.93 E-value=1.8e-24 Score=215.48 Aligned_cols=245 Identities=15% Similarity=0.143 Sum_probs=188.8
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHHH
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDKA 242 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~a 242 (438)
.++...++.+++++.+++++|.++.. ..++|+|||+++.+++.++. .+| ++|+++...|++ +...
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~~-----~~~~~~~~t~al~~~~~~~~-----~~g---~~vl~~~~~~~~~~~~~~ 92 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENGL-----TFLLSGSGTGAMEAALSNLL-----EPG---DKVLVGVNGVFGDRWADM 92 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC-----EEEEecCcHHHHHHHHHHhC-----CCC---CEEEEecCCchhHHHHHH
Confidence 35567777889999999999996544 33789999999999998875 367 899999888887 5678
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
++..|++++.+|+++++.+|++++++.+++ +|++|++++++|++|.+.|+++|+++|+++|+++++|++++.+..
T Consensus 93 ~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~---- 168 (356)
T cd06451 93 AERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGE---- 168 (356)
T ss_pred HHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCc----
Confidence 888999999999988889999999999987 899999999999999999999999999999999999998752222
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh--cccccCCC-----ccCC--CCccCCCCCc
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV--AVTEWSGG-----LYVS--PTVAGSRPGG 392 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~--~~~~~~g~-----~~~~--~~~~gsr~~~ 392 (438)
+++....++|++++++|||+++|.|+|+++.+++.. ..... ....|... .+.. ....++.+-.
T Consensus 169 -------~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 240 (356)
T cd06451 169 -------PFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERAL-ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVN 240 (356)
T ss_pred -------cccccccCccEEEecCchhccCCCCcceeEECHHHH-HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHH
Confidence 244445578999999999999999999988876532 22111 11111100 0000 0111222233
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.++++.++++.+...|+++..++..++++++.+.|.++ |+++
T Consensus 241 ~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 282 (356)
T cd06451 241 LLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKL 282 (356)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 35677889988888899999999999999999999876 5543
No 45
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.93 E-value=1.7e-24 Score=219.12 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=193.4
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHH
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKA 242 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a 242 (438)
.++.+.++.+++++++++++|.+.++ .-+++++||+++..++.... .+| |+|+++...|++. ...
T Consensus 36 ~~~~~~~~~~~~~~~l~~~~g~~~~~-----~vi~~~~gt~a~~~a~~~~~-----~~G---d~Vlv~~~~~~~~~~~~~ 102 (401)
T PLN02409 36 RSPAFPALTKELLEDVKYIFKTKSGT-----PFIFPTTGTGAWESALTNTL-----SPG---DKVVSFRIGQFSLLWIDQ 102 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCC-----EEEEeCCcHHHHHHHHHhcC-----CCC---CEEEEeCCCchhHHHHHH
Confidence 36788889999999999999997654 23889999999988887754 367 8999999998765 577
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHH--HHHcCCeEEEeccccchh
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGEL--ALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~l--a~~~~i~lhVD~a~gg~~ 316 (438)
++.+|++++.++.+.+..+|++++++++++ +|++|++++++|+||.+.|+++|+++ |+++|++++||++++.+.
T Consensus 103 ~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~ 182 (401)
T PLN02409 103 MQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA 182 (401)
T ss_pred HHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC
Confidence 888999999999987666899999999986 78999999999999999999999999 999999999999975322
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch----hcccccCCCc-cC-C-CCccCCC
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF----VAVTEWSGGL-YV-S-PTVAGSR 389 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~----~~~~~~~g~~-~~-~-~~~~gsr 389 (438)
. +++....++|++++++|||+++|+|+|+++++++.+.+..- ....+|.... +. . ....++.
T Consensus 183 ----------~-~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp 251 (401)
T PLN02409 183 ----------L-DFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTP 251 (401)
T ss_pred ----------c-cccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCc
Confidence 2 57777889999999999999999999999887653322110 0111111000 00 0 0012334
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+...++++..+++.+...|++++.++..++++++++.|+++ |+++
T Consensus 252 ~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~ 296 (401)
T PLN02409 252 SIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKL 296 (401)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 44457788899998888999999999999999999999876 6654
No 46
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.93 E-value=9.6e-24 Score=213.49 Aligned_cols=294 Identities=17% Similarity=0.145 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCCCCCC-C-CceeeeecCCCCcchHHHHHHHHHHHh---hccCCCCcccchhHHHHHHHHHHHHHHHhC
Q 013675 111 GVIEKLKEEKGKDVVWQ-G-KCSGTVYIGGSEAEGHFSLINEACSMF---AHTNPLHLDIFQSVARFEAEVIAMTAALLG 185 (438)
Q Consensus 111 ~i~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g 185 (438)
||++++.++..++.... + -..+...+++.. +..+.++.... ...+++++..+.+..++.+++++++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g 78 (398)
T cd00613 3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNP----PAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTG 78 (398)
T ss_pred HHHHHHHHHHhcCcCcccCcccccccccCCcC----cHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHC
Confidence 78888888744333222 1 112222233443 23333333222 112233333378888999999999999999
Q ss_pred CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC----cEEEEeeCCCCCcc
Q 013675 186 NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN----IKLWRVPVDKEFRA 261 (438)
Q Consensus 186 ~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G----i~v~~v~~~~~~~~ 261 (438)
++.++ + +++.+|+++...++.+++.. ..+| ++|+++.+.|+++..++...| ++++.+|+++++.+
T Consensus 79 ~~~~~----v--~~~~~g~~~~~~~~~~~~~~--~~~g---d~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 147 (398)
T cd00613 79 MDVAN----A--SLQDEATAAAEAAGLAAIRA--YHKR---NKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTV 147 (398)
T ss_pred CCccc----e--eccCchHHHHHHHHHHHHhc--ccCC---CEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCc
Confidence 97655 4 56666665555555554421 1136 899999999999999888887 99999999877889
Q ss_pred CHHHHHHhhccCcEEEEEecCCCCCccccCH-HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEE
Q 013675 262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPI-QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSI 340 (438)
Q Consensus 262 d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi-~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsi 340 (438)
|+++++++++++|++|++++++ ++|.+.|+ ++|+++|+++|+++++|++++.+.. ..+....++|++
T Consensus 148 d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~-----------~~~~~~~~~d~~ 215 (398)
T cd00613 148 DLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTG-----------LKPPGEYGADIV 215 (398)
T ss_pred CHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccC-----------CCChHHcCCCEE
Confidence 9999999999999999999986 79999885 9999999999999999998754332 123344579999
Q ss_pred EeCCCCCCCCC-----CCcEEEEEecccccccchhcccccCCCc------cC--CC------CccCCC-----CCchHHH
Q 013675 341 SVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTEWSGGL------YV--SP------TVAGSR-----PGGLIAG 396 (438)
Q Consensus 341 s~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~~~g~~------~~--~~------~~~gsr-----~~~~ia~ 396 (438)
+.++|||+ .| +++|+++.+++ +..........|.... +. .+ ...|+. .....+.
T Consensus 216 ~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~ 293 (398)
T cd00613 216 VGNLQKTG-VPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALM 293 (398)
T ss_pred EeeccccC-CCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHH
Confidence 99999997 65 55778777643 3322111111111100 00 00 001111 1123446
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
+++++..++.+|++++.++..++++++.++|+++++.
T Consensus 294 a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 330 (398)
T cd00613 294 AAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGV 330 (398)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6777888899999999999999999999999987654
No 47
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.93 E-value=9.1e-24 Score=212.88 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
....++++.+++++|.++ + .+|+|+|+++..++.++. .+| ++|+++...|++...+++..|+++
T Consensus 63 ~~~~~l~~~lA~~~g~~~------~--~~~~g~t~a~~~al~~l~-----~~g---d~Vlv~~~~h~s~~~~~~~~G~~~ 126 (387)
T PRK09331 63 PPIADFHEDLAEFLGMDE------A--RVTHGAREGKFAVMHSLC-----KKG---DYVVLDGLAHYTSYVAAERAGLNV 126 (387)
T ss_pred hHHHHHHHHHHHHhCCCc------E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEECCCchHHHHHHHHHcCCEE
Confidence 346677778999999863 3 789999999999998875 367 899999999999999999999999
Q ss_pred EEeeC--CCCCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 251 WRVPV--DKEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 251 ~~v~~--~~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
+.+|+ ++++.+|++++++++++ ++++|+++++++++|.+.|+++|+++|+++|+++|||++++.+.+
T Consensus 127 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~---- 202 (387)
T PRK09331 127 REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM---- 202 (387)
T ss_pred EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc----
Confidence 99999 66888999999999963 689999999999999999999999999999999999999875444
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC-CCCCchHHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG-SRPGGLIAGAWAA 400 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g-sr~~~~ia~~~aa 400 (438)
+++....|+|+++.++||++.+|.|+|+++.+++ ...........+.-. .....| +.+.+.+++++++
T Consensus 203 -------~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~aa 271 (387)
T PRK09331 203 -------PVDGKKLGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVK---EVELLGCTLRGAPLVTLMAS 271 (387)
T ss_pred -------CCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCccc---ceeeeceecCchHHHHHHHH
Confidence 3455567899999999999889999999887654 322211111111000 000011 2222334456666
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+..+-.. .+..++..++++++++.|+++||+++
T Consensus 272 l~~~~~~--~~~~~~~~~~~~~l~~~L~~l~g~~~ 304 (387)
T PRK09331 272 FPHVVER--VKRWDEEVKKARWFVDELEKIEGFKQ 304 (387)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 6544222 24556678899999999999988765
No 48
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.92 E-value=1.8e-23 Score=212.17 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYF 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~ 246 (438)
.+.++..+ + +++|+++++ + ++|+|+|+++..++.++.. +|-.+++|+++..+|++.. ..++..
T Consensus 71 ~~~~~~~~-~-~l~g~~~~~----v--~~~~~~t~~l~~~~~~~~~-----~~~~~~~i~~~~~~~~s~~~~~~~~~~~~ 137 (406)
T TIGR01814 71 TLDESLLK-L-RLVGAKEDE----V--VVMNTLTINLHLLLASFYK-----PTPKRYKILLEAKAFPSDHYAIESQLQLH 137 (406)
T ss_pred hhhhhhcc-c-cccCCCCCc----E--EEeCCchHHHHHHHHHhcC-----CcCCccEEEecCCCCChHHHHHHHHHHhc
Confidence 34444433 4 899998776 6 9999999999999888621 2211247888889999843 345667
Q ss_pred CcEE----EEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 247 NIKL----WRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 247 Gi~v----~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
|+++ +.++.++++.+|++++++.++ ++|++|+++++++.+|.+.|+++|+++|+++|++++||++++.+.+
T Consensus 138 g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~-- 215 (406)
T TIGR01814 138 GLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV-- 215 (406)
T ss_pred CCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc--
Confidence 8887 567766678899999999884 7899999999999999999999999999999999999999765443
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCcc-------------CCCCcc
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY-------------VSPTVA 386 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-------------~~~~~~ 386 (438)
+++....|+|++++++|||+++|+| |+++++.+..... ......|.+... ......
T Consensus 216 ---------~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (406)
T TIGR01814 216 ---------PLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTE-RPRLAGWWGHARPTRFKMDNTLGLIPCGFRI 284 (406)
T ss_pred ---------ccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhc-CCCCCcccCCCCccccccccccCCCccceee
Confidence 4777788999999999999888888 6666655433221 111122322110 000112
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
|+.+-..++++.++++.+...|++++.++...+++++++.|+++
T Consensus 285 GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~ 328 (406)
T TIGR01814 285 SNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKAR 328 (406)
T ss_pred CCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455567788889998888899999999999999999999875
No 49
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.92 E-value=3e-23 Score=207.29 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++++.+++++|. ++ + ++|+|+|+++..++.++. .+| ++|+++..+|++...+++..|++++.
T Consensus 46 ~~~l~~~la~~~g~--~~----i--~~~~g~t~al~~~l~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~ 109 (361)
T cd06452 46 IKDFHHDLAEFLGM--DE----A--RVTPGAREGKFAVMHSLC-----EKG---DWVVVDGLAHYTSYVAAERAGLNVRE 109 (361)
T ss_pred HHHHHHHHHHHcCC--ce----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCcchHHHHHHHhcCCEEEE
Confidence 44566679999998 23 4 899999999999998875 367 89999999999998899999999999
Q ss_pred eeCCCC--CccCHHHHHHhhc-------cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 253 VPVDKE--FRADVKAIKKYIN-------RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 253 v~~~~~--~~~d~~~Le~~I~-------~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
+|++++ +.+|+++++++++ +++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+..
T Consensus 110 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~------ 183 (361)
T cd06452 110 VPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM------ 183 (361)
T ss_pred EecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc------
Confidence 999864 4899999999986 3789999999999999999999999999999999999999874333
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCC-ccCCCCCchHHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT-VAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~-~~gsr~~~~ia~~~aal~ 402 (438)
+++....++|+++.++||++.+|.++|+++.+++ +.+........|... ... ..++...+.++++++++.
T Consensus 184 -----~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~ 254 (361)
T cd06452 184 -----PVSGKELGADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMFKIK---EVELLGCTLRGAPLVTLMASFP 254 (361)
T ss_pred -----CCCHHHcCCCEEEecCCccccCCCCeEEEEECHH-HHHHHhccccccccc---eeeeeccccCchHHHHHHHHHH
Confidence 2444456789999999999878888998887643 333221111111110 011 112222233445666665
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+ .+. .+..++..+.++++++.|+++||+++
T Consensus 255 ~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v 285 (361)
T cd06452 255 HV-KER-VKRWDEEVEKARWFVAELEKIEGIKQ 285 (361)
T ss_pred HH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 43 222 34455556678999999999988765
No 50
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.92 E-value=8.6e-23 Score=222.61 Aligned_cols=325 Identities=14% Similarity=0.109 Sum_probs=221.1
Q ss_pred hHHHHHHHHhhhhhccc-cccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHH
Q 013675 75 KYIEAEKQKVVDKMQSG-VKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEA 151 (438)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (438)
+|++....+.++++..+ +++. +...+..||+ +.| .|++++++++..++..+..+...+.|....|+.+...++. .
T Consensus 24 ~ml~~~g~~s~~~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~-~ 101 (954)
T PRK05367 24 AMLAALGADSLDALIDQAVPASIRLAEPLDLPA-ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILE-N 101 (954)
T ss_pred HHHHhcCCCCHHHHhhhhCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHh-C
Confidence 44444445666777776 4433 3445677875 467 9999999999766665656666666666555211122222 1
Q ss_pred HHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Q 013675 152 CSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231 (438)
Q Consensus 152 ~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv 231 (438)
-..+...+|++++.++|..+...+++.++++|+|++..+ + .++.++|.+...++++.+.. ++++ ++|++
T Consensus 102 ~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~an----a--Sl~d~aTAa~ea~~~a~~~~--~~~~---~~vlv 170 (954)
T PRK05367 102 PAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIAN----A--SLLDEATAAAEAMALAKRVS--KSKS---NRFFV 170 (954)
T ss_pred cchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhh----c--cccccHHHHHHHHHHhhhhc--cCCC---CEEEE
Confidence 122556789999999999999999999999999999887 5 89999999999777776531 1113 79999
Q ss_pred cCCCcCcHHHH----HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 232 PVSAHSAYDKA----AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 232 ~~~~h~s~~~a----~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
++..|++...+ ++..|++++.+|.+.+ .+ ++++.++++..|+ .+|.+.|+++|+++||++|++++
T Consensus 171 ~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~~~~~~vlvq~p~-~~G~i~d~~~i~~~ah~~Gal~~ 239 (954)
T PRK05367 171 DDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------HDDVFGVLLQYPG-TSGEVRDYTALIAAAHARGALVA 239 (954)
T ss_pred cCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------cccEEEEEEecCC-CCeeeccHHHHHHHHHHcCCEEE
Confidence 99999997654 4567999999998642 11 3467777777765 49999999999999999999999
Q ss_pred EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchhc---ccccCCCc-
Q 013675 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFVA---VTEWSGGL- 379 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~~---~~~~~g~~- 379 (438)
||+.+.+..+ ..+....|+|+++.++|||| +|++++|++.+|++-.+...-.. ..++.|..
T Consensus 240 vda~~~Al~~-----------l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~ 308 (954)
T PRK05367 240 VAADLLALTL-----------LTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPA 308 (954)
T ss_pred EEehhhhccC-----------CCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcc
Confidence 9996532222 12457789999999999993 34446999999875333221111 11222221
Q ss_pred cC----CCCccCCCCCc-----h---HHHHHH--HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 380 YV----SPTVAGSRPGG-----L---IAGAWA--ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 380 ~~----~~~~~gsr~~~-----~---ia~~~a--al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
|. .....-+|..+ . +.++.+ .+.++|.+|++++.+++..++++++++|++ +|+++
T Consensus 309 ~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~ 377 (954)
T PRK05367 309 LRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEV 377 (954)
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence 10 00011112111 1 111222 235689999999999999999999999977 57664
No 51
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.91 E-value=4.8e-23 Score=205.94 Aligned_cols=243 Identities=18% Similarity=0.172 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE-EecCCCcCc-HHHHH
Q 013675 167 QSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM-IIPVSAHSA-YDKAA 243 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V-iv~~~~h~s-~~~a~ 243 (438)
+.+.+..+++++.+++++|++++ + .+ ++|+|||+++..++.++.. +| +++ +++...|.. +.+.+
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~~---~i--~~t~~~t~al~~~~~~l~~-----~~---~~vlv~~~~~~~~~~~~~a 97 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGYT---SV--LLQGSGTFAVEAVIGSAVP-----KD---GKLLVVINGAYGARIVQIA 97 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCce---EE--EEcCCCHHHHHHHHHhcCC-----CC---CeEEEEeCChhhHHHHHHH
Confidence 45667778899999999999764 2 14 8999999999999988752 44 454 445555655 35778
Q ss_pred hhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 244 QYFNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
+.+|++++.+|+++++.+|++++++++++ +++++.+++++|+||.+.|+++|+++|+++|++++||++++.+..
T Consensus 98 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~---- 173 (363)
T TIGR02326 98 EYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGI---- 173 (363)
T ss_pred HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCc----
Confidence 89999999999988889999999999975 457788999999999999999999999999999999998653222
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc-------ccCCCccCCCCccCCCCCchH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT-------EWSGGLYVSPTVAGSRPGGLI 394 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-------~~~g~~~~~~~~~gsr~~~~i 394 (438)
+++....++|+++.++|||+++|+|+|+++++++.+.+....... .|....+.......+.+...+
T Consensus 174 -------~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~ 246 (363)
T TIGR02326 174 -------PIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVV 246 (363)
T ss_pred -------ccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHH
Confidence 466677789999999999999999999999876543221100000 010000000011123344556
Q ss_pred HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.++.++++.+..+ |++++.++..++++++.+.|+++ |++
T Consensus 247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~ 286 (363)
T TIGR02326 247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFE 286 (363)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence 7788888887666 48889999999999999999876 544
No 52
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.91 E-value=2.1e-22 Score=193.97 Aligned_cols=305 Identities=16% Similarity=0.183 Sum_probs=233.5
Q ss_pred CCCCCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHH
Q 013675 102 ELPRAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVI 177 (438)
Q Consensus 102 ~lP~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~ 177 (438)
..|....| .|+++++.++.+++...+ -...|.+.+..++ -.+...-.+..|.+-.|+.+ +..++..++..++.
T Consensus 39 ~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np---~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq 115 (496)
T COG1003 39 YPPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNP---KAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQ 115 (496)
T ss_pred CCCCccccHHHHHHHHHHHHhcccccccCccCCcccccccCc---hhhcccccccchhhcCCCCChHHHHHHHHHHHHHH
Confidence 33444467 999999999966665554 4567888887777 45555566677888889887 46799999999999
Q ss_pred HHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC
Q 013675 178 AMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257 (438)
Q Consensus 178 ~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~ 257 (438)
+|++++.|+|.-. +-...|+++-.+.++++|.+...+....|+.+++|+++|......+.+.|++|+.|++++
T Consensus 116 ~~L~~ITG~Davs-------LQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~ 188 (496)
T COG1003 116 EWLKEITGMDAVS-------LQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE 188 (496)
T ss_pred HHHHHhcCCceee-------ccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence 9999999998632 567888999999999998877654333678999999999999999999999999999999
Q ss_pred CCccCHHHHHHhhccCcEEEEEecCCCCCcccc-CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC
Q 013675 258 EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID-PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG 336 (438)
Q Consensus 258 ~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id-di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g 336 (438)
+|.+|+++|++++++++.++.+|+||| +|.++ +|.+|+++.|++|..+..|||--- .-+|. .+....|
T Consensus 189 ~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlN------A~vG~----~rPGd~G 257 (496)
T COG1003 189 NGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLN------AIVGL----ARPGDMG 257 (496)
T ss_pred CCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchh------hhhcc----ccccccc
Confidence 999999999999999999999999988 89985 699999999999999999999521 12332 4456778
Q ss_pred ccEEEeCCCCCCCCC-----CCcEEEEEecccccccchhcccc-cCCCccC----CCCccCC---C--CCchHHHHHHHH
Q 013675 337 VTSISVDVHKYGLAP-----KGTSVVLYRNREIRKHQFVAVTE-WSGGLYV----SPTVAGS---R--PGGLIAGAWAAL 401 (438)
Q Consensus 337 vdsis~s~hK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~-~~g~~~~----~~~~~gs---r--~~~~ia~~~aal 401 (438)
+|++-++.||.++.| +|.|-+.++. .+....-... . ..++.|. .....|. - +.....-.|+-+
T Consensus 258 ~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~-~L~pfLP~p~-~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI 335 (496)
T COG1003 258 FDVVHLNLHKTFCIPHGGGGPGAGPVGVKA-HLAPFLPGPV-VYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYI 335 (496)
T ss_pred cceEEeecccccccCCCCCCCCCCceehHh-hccccCCCCc-ccCCCccccccCCCCccceeeccccCcchHHHHHHHHH
Confidence 999999999996544 5566677763 2322111000 0 1111110 1101110 0 113455789999
Q ss_pred HHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 402 MSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 402 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+.+|.+|+++..+...-+|.|++++|+.
T Consensus 336 ~~mG~~GL~~ase~AvLNANYia~rL~~ 363 (496)
T COG1003 336 RMMGADGLKQASEVAVLNANYIARRLKG 363 (496)
T ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 9999999999999999999999999985
No 53
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=198.38 Aligned_cols=247 Identities=17% Similarity=0.221 Sum_probs=204.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HHH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YDK 241 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~~ 241 (438)
..+|.+..+..++.+.+..+++.+... +-+++++||.++..++.++.. +| ++|++....-++ |.+
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~~-----~~ll~gsGt~amEAav~sl~~-----pg---dkVLv~~nG~FG~R~~~ 97 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENGD-----VVLLSGSGTLAMEAAVASLVE-----PG---DKVLVVVNGKFGERFAE 97 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCc-----EEEEcCCcHHHHHHHHHhccC-----CC---CeEEEEeCChHHHHHHH
Confidence 568889999999999999999998544 338889999999999999874 77 899888777655 889
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
.++.+|.+++.+...+.-.+|++++++++++ +.++|.++|..|+||+..|+++|+++|++||..++||++.+
T Consensus 98 ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS------ 171 (383)
T COG0075 98 IAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSS------ 171 (383)
T ss_pred HHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEeccc------
Confidence 9999999999999988888999999999985 46799999999999999999999999999999999999954
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc-------cccCCCccCCCCccCCCCCc
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-------TEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-------~~~~g~~~~~~~~~gsr~~~ 392 (438)
+|. . +++...+|+|.+..+++|++.+|+|.|++.++++.+....-... ..|..........+.+.+-.
T Consensus 172 ---~Gg-~-~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~ 246 (383)
T COG0075 172 ---LGG-E-PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVN 246 (383)
T ss_pred ---CCC-c-ccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHH
Confidence 332 2 68889999999999999999999999999999876543221111 11111000013445566777
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+.++..+++.+-.+|++.+.++...+++++++.++++ |+++
T Consensus 247 ~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~ 288 (383)
T COG0075 247 LIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLEL 288 (383)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 89999999999999999999999999999999999987 6654
No 54
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=99.91 E-value=3.1e-22 Score=192.96 Aligned_cols=332 Identities=16% Similarity=0.147 Sum_probs=231.4
Q ss_pred chhhHHHHHHHHhhhhhcc-ccccc-cCCCCCCC--CCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHH
Q 013675 72 GVNKYIEAEKQKVVDKMQS-GVKSK-REGWWTEL--PRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFS 146 (438)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l--P~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (438)
..++|++....+.+++++. .+++. +.. ...+ +.++.+ .+++++++++..++..+.+++..++|....|+.+...
T Consensus 18 d~~~ML~~iG~~Sld~L~~~~IP~~Ir~~-~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rn 96 (450)
T COG0403 18 DQQEMLAAIGVSSLDELFSQDIPPSIRKK-LDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRN 96 (450)
T ss_pred HHHHHHHHcCCCCHHHHhhccCCHHHHhc-ccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHH
Confidence 3556777777778888888 45433 222 2222 234568 9999999999777775556776666666665222212
Q ss_pred HHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226 (438)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~ 226 (438)
++. -=+.+..++|++++.++|..+...+.+.++++|.|++..+ . .+..++|.+-..++++.|.... ++
T Consensus 97 ile-~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VAN----A--Sm~DeaTAaAEAm~ma~r~~k~-----k~ 164 (450)
T COG0403 97 ILE-NPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVAN----A--SMLDEATAAAEAMLMAKRVTKK-----KR 164 (450)
T ss_pred hhc-CccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCccc----c--hhhhhHHHHHHHHHHHHHhhcC-----cC
Confidence 322 1122456789999999999999999999999999999886 3 7889999888888888775321 23
Q ss_pred CeEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCc-cccCHHHHHHHHHH
Q 013675 227 PEMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG-IIDPIQELGELALS 301 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG-~iddi~~I~~la~~ 301 (438)
.+++++...|+....+.+.+ |++++.++.+ |.++++++.+.++.++++..|++ +| .+.|+.+|.+.+|+
T Consensus 165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d~~~l~~~~h~ 238 (450)
T COG0403 165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGDVFGVLVQYPNT-FGIVEEDLRALIEAAHS 238 (450)
T ss_pred ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccCeEEEEEecCCC-CCccchhHHHHHHHHhh
Confidence 78999999999988877765 7888888776 89999999445899999999997 77 77789999999999
Q ss_pred cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccch---hcccc
Q 013675 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQF---VAVTE 374 (438)
Q Consensus 302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~---~~~~~ 374 (438)
+|..++|=.---+ ++.--| ....|+|++..+++.+| ||++.+|++.++++-.|+..= -...|
T Consensus 239 ~~al~~v~aDpla--------L~LL~p---PGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D 307 (450)
T COG0403 239 AGALVIVAADPLA--------LGLLKP---PGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVD 307 (450)
T ss_pred cCCEEEEEechhH--------hhccCC---ccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeec
Confidence 9998665332111 111012 35678999999999885 777779999999775544210 01111
Q ss_pred cCCCccCCCCcc-----CCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc
Q 013675 375 WSGGLYVSPTVA-----GSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP-MFLP 435 (438)
Q Consensus 375 ~~g~~~~~~~~~-----gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~ 435 (438)
-.|..-...+++ =+|.- ++++++|+++ +|.+|++++.+++++++.+++++|+++. |+++
T Consensus 308 ~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~--hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~ 384 (450)
T COG0403 308 AAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY--HGPQGLKEIAERIHRLAAYLAAGLKEIGAGVEL 384 (450)
T ss_pred CCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 111110000111 01211 2355666665 8999999999999999999999999764 4444
No 55
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.90 E-value=1.1e-21 Score=212.96 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=221.0
Q ss_pred hcCcch----hhHHHHHHHHhhhhhc-cccccccCCCCCCCCC--CCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCC
Q 013675 68 KLVPGV----NKYIEAEKQKVVDKMQ-SGVKSKREGWWTELPR--AGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGS 139 (438)
Q Consensus 68 ~~~p~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lP~--~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 139 (438)
|++|.. ++|++....+.++++. ..+++.-....+.||+ .++| .|++++++++..++..+..+...+.|....
T Consensus 38 r~i~~~~~~~~~ML~~ig~~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~fiG~G~y~~~~ 117 (993)
T PLN02414 38 RHNSATPEEQKAMAEYCGFDSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHV 117 (993)
T ss_pred ccCCcCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccccCCCCCCccC
Confidence 355543 3444444556677777 4444322222567882 5788 999999999966555444555555555545
Q ss_pred CcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH
Q 013675 140 EAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR 219 (438)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~ 219 (438)
++. ..+-+.+....+...+|++++.+++..+...+++.++++|+|++.++ + .++.++|.+...++++.+.
T Consensus 118 P~~-v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~an----a--SL~d~aTAaaea~~~a~~~--- 187 (993)
T PLN02414 118 PPV-ILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSN----A--SLLDEGTAAAEAMAMCNNI--- 187 (993)
T ss_pred CHH-HHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhh----E--eecCChHHHHHHHHHHHhc---
Confidence 422 22333344444566789999999999999999999999999999887 6 8999999999988877653
Q ss_pred HhcCCCCCeEEecCCCcCcHHHHHh----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHH
Q 013675 220 NKRGITRPEMIIPVSAHSAYDKAAQ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL 295 (438)
Q Consensus 220 ~~~G~~~~~Viv~~~~h~s~~~a~~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I 295 (438)
.+| ++++|++++..|++...+++ ..|++++.+|.+.. | ..++++..+++..|++ +|.+.|+++|
T Consensus 188 -~~g-~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~~~v~~vlvq~P~~-~G~v~dv~~I 255 (993)
T PLN02414 188 -LKG-KKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSSGDVCGVLVQYPAT-DGEVLDYAEF 255 (993)
T ss_pred -ccC-CCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------cccCceEEEEEecCCC-CeEEcCHHHH
Confidence 123 23789999999999765554 45999999987531 1 1233566666666654 9999999999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-----cEEEEEecccccccchh
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-----TSVVLYRNREIRKHQFV 370 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-----~g~l~~r~~~~~~~~~~ 370 (438)
+++||++|++++| +|..-...+ + -+....|+|+++.++|||| +|.| +|++.++++..+. ...
T Consensus 256 ~~~ah~~GaL~iV-aad~lal~~--------l--~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~-~Pg 322 (993)
T PLN02414 256 VKNAHANGVKVVM-ATDLLALTM--------L--KPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRL-MPG 322 (993)
T ss_pred HHHHHHcCCEEEE-EECHHHhcC--------C--CCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhh-CCC
Confidence 9999999999999 665322221 1 1357789999999999997 4444 8999998764332 111
Q ss_pred cccccCC----CccC-----CCCc-----cCCCCCchHHHHHHH-----HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 371 AVTEWSG----GLYV-----SPTV-----AGSRPGGLIAGAWAA-----LMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 371 ~~~~~~g----~~~~-----~~~~-----~gsr~~~~ia~~~aa-----l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
....|.. .... .... .|+..-....+++++ +.++|..|++++.+++..++.+++++|++.
T Consensus 323 riVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~- 401 (993)
T PLN02414 323 RIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL- 401 (993)
T ss_pred cccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-
Confidence 1222311 1110 0111 122222111223322 235689999999999999999999999874
Q ss_pred Cccc
Q 013675 432 MFLP 435 (438)
Q Consensus 432 g~~~ 435 (438)
|+++
T Consensus 402 G~~~ 405 (993)
T PLN02414 402 GFQV 405 (993)
T ss_pred CCcc
Confidence 6664
No 56
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.89 E-value=2.2e-21 Score=208.33 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHhhhhhccc-cccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675 73 VNKYIEAEKQKVVDKMQSG-VKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN 149 (438)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (438)
+++|++....+.++++..+ ++++ +...+..||+ ++| .|++++++++..++.....+..++.|++..++.+...++.
T Consensus 10 ~~~ML~~iG~~s~d~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~ 88 (939)
T TIGR00461 10 QKKMLKTMGYSDLNALIEQLVPPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLE 88 (939)
T ss_pred HHHHHHhcCCCCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHh
Confidence 4456666666777788777 4433 3344567876 467 9999999999666655556666666665554221112222
Q ss_pred HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM 229 (438)
Q Consensus 150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V 229 (438)
.=.-+...+|++++.++|..++..+++.++++|.|++..+ . .+..++|.+...++++.+.. ++ ++++|
T Consensus 89 -~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aN----a--Sl~d~atA~aEa~~~a~~~~----~~-~~~~v 156 (939)
T TIGR00461 89 -NPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVAN----A--SLLDEGTAAAEAMALSFNVS----KK-KANKF 156 (939)
T ss_pred -CchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhh----h--hccchhhHHHHHHHHHHHhh----cC-CCCEE
Confidence 1122456689999999999999999999999999999876 4 78899998888777776532 11 23789
Q ss_pred EecCCCcCcHHHHHh----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675 230 IIPVSAHSAYDKAAQ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (438)
Q Consensus 230 iv~~~~h~s~~~a~~----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~ 305 (438)
++++..|+....+.+ ..|++++.++ +++|++.+ +++++++++|++ +|.++|+++|++++|+.|.+
T Consensus 157 lv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~--~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~gal 225 (939)
T TIGR00461 157 FVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV--DVFGCLLQYPAT-DGSILDYKQLIDALHSHKSL 225 (939)
T ss_pred EECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC--CEEEEEEECCCC-CeEEecHHHHHHHHHHcCCE
Confidence 999999999775555 6699998874 45677766 688999999987 99999999999999999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchhc---ccccCCC
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFVA---VTEWSGG 378 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~~---~~~~~g~ 378 (438)
+++++-.-+..+ ..+....|+|+++.++++|| +|+++.|++.++++-.+...-.. ..+-.|.
T Consensus 226 ~~~~ad~~al~l-----------l~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~ 294 (939)
T TIGR00461 226 VSVAADLMALTL-----------LTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGN 294 (939)
T ss_pred EEEEechHHhCC-----------cCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCC
Confidence 999766432222 13346679999988889886 45666899999876444322111 1111221
Q ss_pred c-c-C---CCCccCCCCCc--------hHHHHHHH--HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 379 L-Y-V---SPTVAGSRPGG--------LIAGAWAA--LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 379 ~-~-~---~~~~~gsr~~~--------~ia~~~aa--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
. | . +....=+|..+ .+.++.++ +.++|.+|++++.+++..++.++++.|++ .|+++
T Consensus 295 ~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~ 365 (939)
T TIGR00461 295 TALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHEL 365 (939)
T ss_pred ccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcc
Confidence 1 0 0 11111122111 11222223 45689999999999999999999999998 58775
No 57
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.89 E-value=1.4e-21 Score=194.28 Aligned_cols=243 Identities=18% Similarity=0.179 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCc-HHHHHhh
Q 013675 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSA-YDKAAQY 245 (438)
Q Consensus 168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s-~~~a~~~ 245 (438)
...++.+++++.+++++|.++.. ...++++|||+++..++.++.. +| +++++ ....|.. +..+++.
T Consensus 28 ~~~~~~~~~~~~la~~~~~~~~~----~~i~~~~~gt~~l~~~~~~~~~-----~~---~~vi~~~~~~~~~~~~~~a~~ 95 (355)
T TIGR03301 28 EFNDVTDQVRDRLLALAGGDDNH----TCVLLQGSGTFAVEATIGSLVP-----RD---GKLLVLINGAYGERLAKICEY 95 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC----cEEEEeCCcHHHHHHHHHhccC-----CC---CeEEEECCCchhhHHHHHHHH
Confidence 44577888999999999998653 1226899999999999998752 34 56554 4444544 5678889
Q ss_pred cCcEEEEeeCCCCCccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 246 FNIKLWRVPVDKEFRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
+|++++.++.++++.+|++++++++++ ++++++.++++|++|.+.|+++|+++|++||+++++|++++-+..
T Consensus 96 ~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~------ 169 (355)
T TIGR03301 96 LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAI------ 169 (355)
T ss_pred cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCc------
Confidence 999999999987889999999999975 456888899999999999999999999999999999987642221
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC------CccCCCCccCCCCCchHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG------GLYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g------~~~~~~~~~gsr~~~~ia~~ 397 (438)
++++...++|+++.++|||+++|.|+|+++++++.+........+.+.. .........++.+...++++
T Consensus 170 -----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~ 244 (355)
T TIGR03301 170 -----PIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAF 244 (355)
T ss_pred -----ccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHH
Confidence 3556667899999999999889999999888765332211000000000 00000011223333445677
Q ss_pred HHHHHHHcHHH-HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 398 WAALMSLGQEG-YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 398 ~aal~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..+++.+..+| +.+..++..++++++.+.|+++ |++
T Consensus 245 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~ 281 (355)
T TIGR03301 245 AQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQ 281 (355)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence 77888777776 8888999999999999999876 554
No 58
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.89 E-value=1.9e-21 Score=194.69 Aligned_cols=244 Identities=20% Similarity=0.280 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH--HHHHh
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY--DKAAQ 244 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~--~~a~~ 244 (438)
+...+..+++++.+++++|.+++. ..-++|++||+++..++.++.. +| +++++....++.. .+.++
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~----~~i~~~~~gt~~l~~~~~~l~~-----~~---~~vlv~~~~~~~~~~~~~~~ 100 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGY----TCVPLQGSGTFSVEAAIGSLVP-----RD---GKVLVPDNGAYGARIAQIAE 100 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc----eEEEEcCCcHHHHHHHHHhccC-----CC---CeEEEEeCCchHHHHHHHHH
Confidence 445567889999999999997532 0227899999999999998753 55 6788877666554 47888
Q ss_pred hcCcEEEEeeCCCCCccCHHHHHHhhccC--cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 245 YFNIKLWRVPVDKEFRADVKAIKKYINRN--TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~--t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
..|++++.+|+++++.+|+++++++++++ +++|++++++|+||.+.|+++|.++|+++|++++||++++
T Consensus 101 ~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~--------- 171 (368)
T PRK13479 101 YLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSS--------- 171 (368)
T ss_pred HcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccc---------
Confidence 99999999999878889999999999754 5689999999999999999999999999999999997753
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc-----cC--CCCccCCCCCchHH
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL-----YV--SPTVAGSRPGGLIA 395 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~-----~~--~~~~~gsr~~~~ia 395 (438)
.|. . +++....++|++++++|||+++|+|+|+++++++...... .....|.... +. ......+.+...++
T Consensus 172 ~g~-~-~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 248 (368)
T PRK13479 172 FGA-I-PIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACK-GNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVA 248 (368)
T ss_pred cCC-c-cccccccCceEEEecCccccccCCCceEEEECHHHHHHhh-cCCCCeeecHHHHHhhhcccCCCCCCCcHHHHH
Confidence 221 1 4666667899999999999999999999988764322111 1111111000 00 00111133344567
Q ss_pred HHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 396 GAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 396 ~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++.+++..+..+ ++++..+++.++++++.+.|+++ |+++
T Consensus 249 ~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 288 (368)
T PRK13479 249 AFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEP 288 (368)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 888888877555 47888899999999999999887 5553
No 59
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.88 E-value=7.4e-22 Score=191.64 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...++++.+++++|.+.. + ++|+|+|+++..++.++. ++| ++|+++.+.|.++..++...|++++
T Consensus 60 ~i~~~~~~~A~~~ga~~~-----~--~~~~Gst~a~~~~l~al~-----~~g---d~Vlv~~~~h~s~~~~~~~~g~~~~ 124 (294)
T cd00615 60 PIKEAQELAARAFGAKHT-----F--FLVNGTSSSNKAVILAVC-----GPG---DKILIDRNCHKSVINGLVLSGAVPV 124 (294)
T ss_pred HHHHHHHHHHHHhCCCCE-----E--EEcCcHHHHHHHHHHHcC-----CCC---CEEEEeCCchHHHHHHHHHCCCEEE
Confidence 345667789999998643 2 569999999999988875 377 8999999999999999999999999
Q ss_pred EeeCCCC------CccCHHHHHHhhcc--CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 252 RVPVDKE------FRADVKAIKKYINR--NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 252 ~v~~~~~------~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
.++++.+ +.+|++++++++++ +++++++++| |++|.+.|+++|+++|+++|++++||+++++... |..
T Consensus 125 ~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~-~~~-- 200 (294)
T cd00615 125 YLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFR-FHP-- 200 (294)
T ss_pred EecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhc-cCc--
Confidence 9987532 47999999999964 6889999998 5799999999999999999999999999986432 111
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~ 403 (438)
. . +.+....|+|+++.|+||++.++.++|++..+++......+.... .....++.+...++++-.+++.
T Consensus 201 -~-~-~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~--------~~~~ttsps~~~~asl~~a~~~ 269 (294)
T cd00615 201 -I-L-PSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL--------NLHQSTSPSYLILASLDVARAM 269 (294)
T ss_pred -c-c-CcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH--------HHHCCCCcHHHHHHHHHHHHHH
Confidence 0 1 233445689999999999987777788877776522211111100 0111234444557788888877
Q ss_pred HcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 404 LGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 404 ~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+..+| .+..++..+++++++++|.+
T Consensus 270 ~~~~g-~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 270 MALEG-KELVEELIELALYARQEINK 294 (294)
T ss_pred HHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence 75555 44678888899999988753
No 60
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.88 E-value=2.6e-21 Score=210.91 Aligned_cols=249 Identities=14% Similarity=0.039 Sum_probs=185.0
Q ss_pred ccCCCC-cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675 157 HTNPLH-LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA 235 (438)
Q Consensus 157 ~~n~~~-~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~ 235 (438)
..|+.. +..+....++.+++++.+++++|+++++ -.| +||+|+|+|+.++..++.. ++| ++|+++...
T Consensus 63 ~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~--~~V--vFtsnaT~alnlva~~l~~----~~g---d~Iv~t~~e 131 (805)
T PLN02724 63 YGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD--YAC--VFTSGATAALKLVGETFPW----SSE---SHFCYTLEN 131 (805)
T ss_pred cCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc--eEE--EEeCChHHHHHHHHHHCCC----CCC---CeEEEeecc
Confidence 345543 2234556778889999999999997643 014 8999999999998777531 356 899999999
Q ss_pred cCcHHH---HHhhcCcEEEEeeCC--------CCCccCH--HHHHHhh----------ccCcEEEEEecCCCCCccccCH
Q 013675 236 HSAYDK---AAQYFNIKLWRVPVD--------KEFRADV--KAIKKYI----------NRNTVLIVGSAPGFPHGIIDPI 292 (438)
Q Consensus 236 h~s~~~---a~~~~Gi~v~~v~~~--------~~~~~d~--~~Le~~I----------~~~t~~vv~~~~~~~tG~iddi 292 (438)
|.+... .++..|++++.+|++ +++.+|+ +++++.+ +++|++|++++.+|.+|.+.|+
T Consensus 132 H~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi 211 (805)
T PLN02724 132 HNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPL 211 (805)
T ss_pred ccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCH
Confidence 988553 344569999999987 3444544 6677764 2457899999999999999999
Q ss_pred HHHHHHHHHc--------CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675 293 QELGELALSH--------GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREI 364 (438)
Q Consensus 293 ~~I~~la~~~--------~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~ 364 (438)
+.|.++++.. +++++||++++ +|+ . ++|+...++|++++|+|||+++|.|+|++++|++..
T Consensus 212 ~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~---------~g~-~-piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~ 280 (805)
T PLN02724 212 DLVKLIKDNQHSNFSKSGRWMVLLDAAKG---------CGT-S-PPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAA 280 (805)
T ss_pred HHHHHHHHhcccccccCcceEEEeehhhh---------cCC-C-CCChhhcCCCEEEEecceeccCCCCceEEEEehhhh
Confidence 9876655532 35799999965 343 3 578888899999999999976799999999986533
Q ss_pred cccchhcccccCCCc----------c-------CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh
Q 013675 365 RKHQFVAVTEWSGGL----------Y-------VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427 (438)
Q Consensus 365 ~~~~~~~~~~~~g~~----------~-------~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L 427 (438)
... .+.+.|+. + ......|+.+...++++.++++++-..|++++.++..++++++.+.|
T Consensus 281 ~~l----~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L 356 (805)
T PLN02724 281 KLL----KKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSL 356 (805)
T ss_pred hhh----cCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 211 11222221 0 01123467777778899999999888899999999999999999999
Q ss_pred hcCC
Q 013675 428 VLFP 431 (438)
Q Consensus 428 ~~~~ 431 (438)
++++
T Consensus 357 ~~l~ 360 (805)
T PLN02724 357 RNLK 360 (805)
T ss_pred Hhcc
Confidence 9886
No 61
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.88 E-value=1.3e-20 Score=201.17 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=218.8
Q ss_pred hhhHHHHHHHHhhhhhc-cccccc-cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHH
Q 013675 73 VNKYIEAEKQKVVDKMQ-SGVKSK-REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN 149 (438)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (438)
+++|++....+.++++. ..+++. +....++||+ +.+ .|++++++++..++..+..+..++.|.+..|+.+...++.
T Consensus 25 ~~~ML~~iG~~s~d~l~~~~iP~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~ 103 (954)
T PRK12566 25 QQAMLDALGVASRAELIEQTVPPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLE 103 (954)
T ss_pred HHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHh
Confidence 44566655667777887 444433 3344567877 568 9999999999766666666666666666555222223332
Q ss_pred HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 013675 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEM 229 (438)
Q Consensus 150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V 229 (438)
.=.-+...+|++++.++|..+...+.+.|+++|.|++..+ . .+..++|.+-..++++.|.. +. + +.++
T Consensus 104 -~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaN----A--Sl~D~atA~aEA~~ma~~~~-~~-k---~~~~ 171 (954)
T PRK12566 104 -NPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLAN----A--SLLDEATAAAEAMALAKRVA-KS-K---SNRF 171 (954)
T ss_pred -CchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhh----h--hhccchhHHHHHHHHHHHHh-hc-C---CCEE
Confidence 1122455689999999999999999999999999999776 3 67788887666555444421 11 1 3689
Q ss_pred EecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675 230 IIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (438)
Q Consensus 230 iv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~ 305 (438)
+++...|+....+.+.+ |++++. +++++.+++++++|++.+|++ .|.+.|+++|.+++|+.|..
T Consensus 172 ~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~~i~~~~h~~gal 239 (954)
T PRK12566 172 FVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAHAVFGALLQYPDT-HGEIRDLRPLIDQLHGQQAL 239 (954)
T ss_pred EECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCCCEEEEEEECCCC-ceEEccHHHHHHHHHHcCCE
Confidence 99999999987766654 777764 445556777899999999987 89999999999999999998
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccchh---cccccCCC
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQFV---AVTEWSGG 378 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~~~---~~~~~~g~ 378 (438)
+++-+-.- +++.--| ....|+|+++.+++.+| ||++..|++.++++-.++..-+ ...|-.|.
T Consensus 240 ~~~~~d~l--------aL~ll~~---Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~ 308 (954)
T PRK12566 240 ACVAADLL--------SLLVLTP---PGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGN 308 (954)
T ss_pred EEEEeCHH--------HHhCCCC---hhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCC
Confidence 55332211 1221112 36679999999888664 7778899999987644432110 11111111
Q ss_pred ccCCCCcc-----CCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 379 LYVSPTVA-----GSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 379 ~~~~~~~~-----gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
.-...+++ =+|.- ++++++|+++ +|.+|++++.+++..++.++++.|++ +|+++.
T Consensus 309 ~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~--~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~ 380 (954)
T PRK12566 309 TALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVY--HGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRL 380 (954)
T ss_pred eeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHh-cCCccc
Confidence 10001111 11211 2345555554 79999999999999999999999998 687753
No 62
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.87 E-value=8.7e-21 Score=194.77 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc---CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT---SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t---~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~ 243 (438)
....++|+.+++.++++||+++++ + +++ ++||+|+.+++.++. ++| ++|+++...|.+....+
T Consensus 76 ~~~~~iE~~ar~~~a~lf~a~~~~----~--~~~~~~~sgt~an~~v~~al~-----~~g---d~Ii~~~~ehg~~l~~~ 141 (452)
T PTZ00094 76 EVVDKIENLCQKRALEAFGLDPEE----W--GVNVQPYSGSPANFAVYTALL-----QPH---DRIMGLDLPSGGHLTHG 141 (452)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccc----c--eeecCCCchHHHHHHHHHHhc-----CCC---CEEEecccccCCccccc
Confidence 445667777899999999998765 3 444 899999999999884 367 89999999998865443
Q ss_pred hh----------cCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 244 QY----------FNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 244 ~~----------~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
.. .++++..+++++++.+|+++|++++++ ++++++++ ++.+|.+.|+++|+++|+++|+++|||+++
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq 219 (452)
T PTZ00094 142 FYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAH 219 (452)
T ss_pred ccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccc
Confidence 21 123455666777899999999999964 67666654 345999999999999999999999999998
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
+.+.+|. +. . +. ...++|++++++|||++||.| |+++++++ .... +. .+... ...+...|+..-.
T Consensus 220 ~~G~i~~----~~-~-~~--~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~-~~~~-l~---~~~~~-~~~p~~~G~~~~~ 284 (452)
T PTZ00094 220 TSGLVAA----GV-L-PS--PFPYADVVTTTTHKSLRGPRS-GLIFYRKK-VKPD-IE---NKINE-AVFPGLQGGPHNH 284 (452)
T ss_pred hhccccC----CC-C-CC--CCCCCcEEEcCCccCCCCCCc-eEEEEecc-cchH-HH---Hhhcc-ccCCCCCCCchHH
Confidence 7766641 10 0 11 123799999999999899998 88888654 2211 00 00000 0112233444445
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.++++.++++.+...++++..+++.+++++|.+.|++. |+++
T Consensus 285 ~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v 326 (452)
T PTZ00094 285 QIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDL 326 (452)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEE
Confidence 68889999988877788889999999999999999875 6543
No 63
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.87 E-value=2e-20 Score=187.85 Aligned_cols=247 Identities=17% Similarity=0.162 Sum_probs=182.7
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~ 241 (438)
+|....|..++.+.+.+++.+.+|.+.+. ..+| ++|.|+++|+..++.++.+ +| |+|+++++.|+++..
T Consensus 60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~-~~ei--ivt~Ga~~al~~~~~a~~~-----pG---DeVlip~P~Y~~y~~ 128 (393)
T COG0436 60 HYTPSAGIPELREAIAEKYKRRYGLDVDP-EEEI--IVTAGAKEALFLAFLALLN-----PG---DEVLIPDPGYPSYEA 128 (393)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCeE--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCCcCHHH
Confidence 55578899999999999999998854221 0126 9999999999999999985 88 999999999999999
Q ss_pred HHhhcCcEEEEeeCC---CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 242 AAQYFNIKLWRVPVD---KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~---~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.....|.+++.+|++ .++.+|+++++++|+++|++|++++||||||.+.+ +++|+++|++||++++.|++|.++
T Consensus 129 ~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l 208 (393)
T COG0436 129 AVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEEL 208 (393)
T ss_pred HHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhc
Confidence 999999999999975 37999999999999999999999999999999966 789999999999999999999877
Q ss_pred hhhhhhhcCCCCCCCccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675 316 VLPFAKKLGYPIPPFDFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ 393 (438)
..- ..-+ .+...... ....+..-|..|.. +++..+|+++..++++.+........ .-.+..
T Consensus 209 ~yd---~~~~-~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~-------------~~~~~~ 271 (393)
T COG0436 209 VYD---GAEH-PSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSY-------------LTSCAP 271 (393)
T ss_pred ccC---CCCc-CCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHh-------------cccCCC
Confidence 651 1000 11111111 11244555778983 35566999887755444332211110 011111
Q ss_pred HHHHHHHHHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 394 IAGAWAALMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 394 ia~~~aal~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
...+.++...+.. ...++..+...+.++.+.+.|.+++|+.+.
T Consensus 272 ~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~ 318 (393)
T COG0436 272 TPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVV 318 (393)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 3355555555532 356666678889999999999999887653
No 64
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.87 E-value=6e-20 Score=184.05 Aligned_cols=230 Identities=16% Similarity=0.101 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...+.++.+++++|.++. .+++|+++++..++.++. ++| ++|+++...|++...+++..|++++
T Consensus 52 ~~~~~~e~lA~~~g~~~~--------~i~~g~~~a~~~~~~~l~-----~~g---d~Vl~~~~~h~s~~~~~~~~g~~~~ 115 (370)
T TIGR02539 52 PIHDFLEDLAEFLGMDEA--------RVTHGAREGKFAVMHALC-----KEG---DWVVLDGLAHYTSYVAAERAGLNVK 115 (370)
T ss_pred HHHHHHHHHHHHhCCCce--------EEECChHHHHHHHHHHhh-----CCC---CEEEECCcccHHHHHHHHHcCCEEE
Confidence 334556679999999753 578999999999988875 366 8999999999998888999999999
Q ss_pred EeeCCC--CCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 252 RVPVDK--EFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 252 ~v~~~~--~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
.+|.++ ++.+|+++|++++++ ++++|++++|++++|.+.|+++|+++|+++|+++++|++|+.+..|
T Consensus 116 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~---- 191 (370)
T TIGR02539 116 EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMP---- 191 (370)
T ss_pred EEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcC----
Confidence 999863 688999999999963 6889999999999999999999999999999999999998754322
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
.+....++|+++.++||++.++.++|+++.++ ++.+........|.-... ....++......+++++++.
T Consensus 192 -------~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~-~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~al~ 261 (370)
T TIGR02539 192 -------VSAKEIGADFIVGSGHKSMAASGPCGVLGMSE-EWEDIVLRKSRYSPVKEV--ELLGCTSRGAPIVTMMASFP 261 (370)
T ss_pred -------CCHHHcCCCEEEeeCcccccCCCCEEEEEECH-HHHhhhcccccCCcccee--eeecccccccHHHHHHHHHH
Confidence 23334568999999999976666689887764 433322222222211110 00112222233445555554
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.. .+ +.+..++..++++++++.|+++ |++
T Consensus 262 ~~-~~-~l~~~~~~~~~~~~l~~~L~~~-g~~ 290 (370)
T TIGR02539 262 HV-VE-RVKRWDEEVKKTRWFVAELEDI-GFI 290 (370)
T ss_pred HH-HH-HHHHHHHHHHHHHHHHHHHHhC-CcE
Confidence 32 22 2233444556678999999887 554
No 65
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.85 E-value=1.3e-19 Score=184.20 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi 248 (438)
.+++.+.++++.|.... ++|++||+|+.+++.++. ++| ++||++...|.+....+ ..+|+
T Consensus 66 ~~~le~~lA~l~g~~~a--------v~~sSGt~Al~~al~~ll-----~~G---d~Vi~~~~~y~~t~~~~~~~l~~~Gi 129 (433)
T PRK08134 66 VAVLEERVAALEGGVGA--------IATASGQAALHLAIATLM-----GAG---SHIVASSALYGGSHNLLHYTLRRFGI 129 (433)
T ss_pred HHHHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEeCCccHHHHHHHHHHHhhCCe
Confidence 33444568899987642 899999999999998874 367 89999999998764444 45799
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++++ |+++++++|+++|++|++++++||+|.+.|+++|+++|+++|++++||++++....+ .
T Consensus 130 ~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~--------~- 195 (433)
T PRK08134 130 ETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL--------R- 195 (433)
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC--------C-
Confidence 99999875 899999999999999999999999999999999999999999999999998644331 1
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc--c-----cchhcccccCCCccCCC----------------
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR--K-----HQFVAVTEWSGGLYVSP---------------- 383 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~--~-----~~~~~~~~~~g~~~~~~---------------- 383 (438)
+ ...|+|+++.|.|||+ +|.| .|.+++...... . ........| ++.....
T Consensus 196 p---l~~GaD~vv~S~tK~l-~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 270 (433)
T PRK08134 196 P---FEHGADLVYHSATKFL-GGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF-HGMVFAEESTVAAFLLRARREGL 270 (433)
T ss_pred c---hhcCCCEEEecccccc-CCCCCceEEEEEecCccccccccccccccCCcccc-cccchhhccchhHHHHHHHHHHH
Confidence 2 2468999999999995 5555 455555322111 0 000000011 1110000
Q ss_pred CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
...|.... ...+|..+ .|.+.+..+.++..++|..+.+.|+++|.++-+.|
T Consensus 271 ~~~G~~ls--~~~A~l~~--~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~y 321 (433)
T PRK08134 271 RDFGACLS--PMNAWQLL--QGIETLPLRMERHVANTRKVVAFLASHPAVARVAH 321 (433)
T ss_pred HhcCCCCC--HHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 00111111 12444443 56678899999999999999999999998875544
No 66
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.85 E-value=9.7e-20 Score=181.81 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC------------CCCeEEecCCCc
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI------------TRPEMIIPVSAH 236 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~------------~~~~Viv~~~~h 236 (438)
..++.+++.+++++++|.+. + ++|+|+|+|+.++++++.. +|- ..++|+++.+.+
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~------~--~~~~g~t~al~~al~al~~-----~Gd~~~~~~~~~s~~~~~eVi~~~~~~ 109 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVED------A--VIVSSASAGIAQSVAAVIT-----RGNRYLVENLHDSKIEVNEVVLPKGHN 109 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCe------E--EEEcCHHHHHHHHHHHHhc-----CCCcchhhcccccccccceEEEECccc
Confidence 45677889999999999862 3 8999999999999999853 440 124899987544
Q ss_pred Cc----HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEE-EecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 237 SA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIV-GSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 237 ~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv-~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
.. +..++...|++++.++. ++.+|+++++++|+++|++++ ++.+++++|.+.|+++|+++|++||+++++|++
T Consensus 110 ~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a 187 (363)
T TIGR01437 110 VDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAA 187 (363)
T ss_pred hhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECC
Confidence 43 35677788999999987 356999999999999999766 567788999999999999999999999999999
Q ss_pred ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
++.-. + .....|+|++++|+||++.+|. .|+++.+ ++...... ..+.+.. .....| .
T Consensus 188 ~~~~~----~---------~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~-~~~i~~~~---~~~~~~~--~~~~~~---~ 244 (363)
T TIGR01437 188 AEEDL----Q---------KYYRLGADLVIYSGAKAIEGPT-SGLVLGK-KKYIEWVK---LQSKGIG--RAMKVG---K 244 (363)
T ss_pred CCCch----H---------HHHHcCCCEEEEeCCcccCCCc-eEEEEEc-HHHHHHHH---hccCCCc--ceeccC---H
Confidence 86111 0 0112368999999999988888 6876654 33332211 1111110 000011 1
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..++++.+++..+-..+. +..+...+.++++.++|+++||+++
T Consensus 245 ~~~~gl~aAl~~~~~~~~-~~~~~~~~~~~~l~~~L~~i~g~~~ 287 (363)
T TIGR01437 245 ENILGLTAALEQYLSTGK-ESGAEMVAKLTPFIEALNTLKGVSA 287 (363)
T ss_pred HHHHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHHHhcCCCeEE
Confidence 236688888877644343 3333444567789999999999865
No 67
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.84 E-value=4.4e-19 Score=171.07 Aligned_cols=295 Identities=16% Similarity=0.107 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHHHHHHhhccC-CCCcccchhHHHHHHHHHHHHHHHhCCCC
Q 013675 110 VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGNKE 188 (438)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~e~~~~~~~a~l~g~~~ 188 (438)
..++-++.++...+..-.+ .|..+++..+ ++.+.+++....... ..+|...-|..++...+++++++++|...
T Consensus 17 ~~vw~e~~~la~e~~~~~~--LgqGfp~~~~----P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~ 90 (420)
T KOG0257|consen 17 PYVWTEINRLAAEHKVPNP--LGQGFPDFPP----PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLL 90 (420)
T ss_pred CcHHHHHHHHHHhcCCCCc--ccCCCCCCCC----cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhcccc
Confidence 5677777776332222111 3433344443 466677666655553 34466667788899999999999887632
Q ss_pred CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC--------CCCc
Q 013675 189 KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--------KEFR 260 (438)
Q Consensus 189 ~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~--------~~~~ 260 (438)
.. -++| ++|.|+.+|+..+++++.+ +| |+|++.++.+.++.....+.|.+.+.||.. +++.
T Consensus 91 ~~-~~eV--lVT~GA~~ai~~~~~~l~~-----~G---DeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~ 159 (420)
T KOG0257|consen 91 DP-DDEV--LVTAGANEAISSALLGLLN-----PG---DEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT 159 (420)
T ss_pred CC-cccE--EEecCchHHHHHHHHHHcC-----CC---CEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence 11 1137 9999999999999999985 88 999999999999999999999999999986 3789
Q ss_pred cCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC-
Q 013675 261 ADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG- 336 (438)
Q Consensus 261 ~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g- 336 (438)
+|.+++|.+++++|++|++++|+||||.+.+ +++|+++|++||++++.|.+|..++. + |...+.+... +|
T Consensus 160 ~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~---d--~~~h~r~asl-Pgm 233 (420)
T KOG0257|consen 160 LDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY---D--GNKHIRIASL-PGM 233 (420)
T ss_pred CChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh---C--CCcceeeecC-Cch
Confidence 9999999999999999999999999999976 88999999999999999999975543 1 1101112212 44
Q ss_pred --ccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH--cH-HHHH
Q 013675 337 --VTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL--GQ-EGYL 410 (438)
Q Consensus 337 --vdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~--g~-~g~~ 410 (438)
.++-+.|+.|+. +.+...|+++. ++.+.........+.. +..++. -..+..++....+... +. ....
T Consensus 234 ~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~---~~~~Tp---~q~A~a~a~~~~~~~~~p~~~y~~~ 306 (420)
T KOG0257|consen 234 YERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNFV---FTCPTP---IQEASAAAFALELACLQPGGSYFIT 306 (420)
T ss_pred hheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhccc---cccCcH---HHHHHHHHHhhhhhccCCcchhHHH
Confidence 477778889992 33344898777 5554433222221110 000000 0011111222222101 11 2234
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 411 ENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 411 ~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++.+..+++++.|.+.|.++ |+++
T Consensus 307 ~~~~~y~~krdil~k~L~~l-g~~v 330 (420)
T KOG0257|consen 307 ELVKEYKEKRDILAKALEEL-GLKV 330 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 47888999999999999988 7664
No 68
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.84 E-value=4.6e-19 Score=178.30 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=178.6
Q ss_pred HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675 149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226 (438)
Q Consensus 149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~ 226 (438)
.+++...+......|...++..++.+.+.+++.+.+| .++++ + ++|+|+++++.+++.++.. +|
T Consensus 43 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~----i--~~t~g~~~al~~~~~~l~~-----~g--- 108 (382)
T PRK06108 43 RDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPER----I--AVTSSGVQALMLAAQALVG-----PG--- 108 (382)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcce----E--EEeCChHHHHHHHHHHhcC-----CC---
Confidence 3333333333333455567778889999999998888 55554 6 8999999999999888753 67
Q ss_pred CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHH
Q 013675 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELAL 300 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~ 300 (438)
++|+++.++|+.+...++.+|++++.+|++. ++.+|++++++.++++++++++++|+||||.+.+ +++|.++|+
T Consensus 109 d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~ 188 (382)
T PRK06108 109 DEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCR 188 (382)
T ss_pred CEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence 8999999999999999999999999999973 4679999999999889999999999999998865 678999999
Q ss_pred HcCCeEEEeccccchhhhhhhhcCCCCCC-CccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCC
Q 013675 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPP-FDFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (438)
Q Consensus 301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g 377 (438)
++|+++++|++|+.+... .+...+. .+... ..-.++..+++|.+ ..+.++|+++.++ ++....... ..+..
T Consensus 189 ~~~~~li~De~y~~~~~~----~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~-~~~~~~~~~-~~~~~ 262 (382)
T PRK06108 189 RHGLWIVADEVYERLYYA----PGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP-ALGQVLEKL-IEYNT 262 (382)
T ss_pred HCCcEEEEehhhhhhccC----CCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH-HHHHHHHHH-HHhcc
Confidence 999999999999876541 0100111 12111 12357788999973 3445589988754 333221110 01100
Q ss_pred CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..-+.....++..++. -+.+.+++..++..++.+++.+.|++++++++
T Consensus 263 ---------~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 310 (382)
T PRK06108 263 ---------SCVAQFVQRAAVAALD-EGEDFVAELVARLRRSRDHLVDALRALPGVEV 310 (382)
T ss_pred ---------cCCChHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 0001111122333332 24455678888899999999999988877654
No 69
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.84 E-value=3e-19 Score=180.31 Aligned_cols=241 Identities=20% Similarity=0.210 Sum_probs=172.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
..|...++..++++.+.+++.+.+|. ++++ + ++|+|+++|+.+++.++. .+| ++|+++.++|.+
T Consensus 64 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---~~Vlv~~p~y~~ 129 (391)
T PRK08361 64 THYTPNAGIPELREAIAEYYKKFYGVDVDVDN----V--IVTAGAYEATYLAFESLL-----EEG---DEVIIPDPAFVC 129 (391)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCccc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCCcc
Confidence 33444567788888888888777764 4444 6 899999999999988875 367 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
+...+...|++++.+|+++ ++.+|++++++.++++++++++++|+||||.+.| +++|.++|+++++++++|++|+
T Consensus 130 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 209 (391)
T PRK08361 130 YVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE 209 (391)
T ss_pred cHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc
Confidence 9999999999999999975 5679999999999999999999999999999998 8899999999999999999998
Q ss_pred chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
.+... ... .+++.......++++.+++|. ++.+| +|+++..+ ++.+..........++ -+
T Consensus 210 ~~~~~---~~~--~~~~~~~~~~~~i~~~s~SK~-~~~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~----------~~- 271 (391)
T PRK08361 210 HFLYE---GAK--HYPMIKYAPDNTILANSFSKT-FAMTGWRLGFVIAPE-QVIKDMIKLHAYIIGN----------VA- 271 (391)
T ss_pred cceeC---CCC--CCCHhhcCCCCEEEEecCchh-cCCcHhhhhhhccCH-HHHHHHHHHHhhhccC----------CC-
Confidence 66431 100 111111112347888999998 56556 89988754 3332211111100000 00
Q ss_pred chHHHHHHHHHHHc--H--HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 392 GLIAGAWAALMSLG--Q--EGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 392 ~~ia~~~aal~~~g--~--~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
...+.++...+. . +.+++..++..+..+.+.+.|++++++++
T Consensus 272 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 317 (391)
T PRK08361 272 --SFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKV 317 (391)
T ss_pred --hHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 112333333332 1 34667777788888899999988877653
No 70
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.84 E-value=8.3e-19 Score=177.01 Aligned_cols=240 Identities=17% Similarity=0.178 Sum_probs=172.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|....+..++.+.+++++++.+|.+ +++ + ++|+|+++++..++.++. .+| |+|+++.+.|.
T Consensus 59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~P~y~ 124 (389)
T PRK05957 59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQA----I--VVTAGSNMAFMNAILAIT-----DPG---DEIILNTPYYF 124 (389)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCe----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEeCCCCc
Confidence 345556777788899999999999974 333 5 899999999998888765 367 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
.+...++..|++++.+|.++++.+|+++++++++++|++|++++|+||||.+.| +++|+++|+++|+++++|++|+.
T Consensus 125 ~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~ 204 (389)
T PRK05957 125 NHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEY 204 (389)
T ss_pred CHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchh
Confidence 988888999999999999888899999999999999999999999999999987 88999999999999999999986
Q ss_pred hhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 315 FVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
+... .... .+.... ....-.++..+..|. ++.+| +|+++..+ ++.+........+... -+
T Consensus 205 ~~~~---~~~~-~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~~----------~~- 267 (389)
T PRK05957 205 FTYD---GVKH-FSPGSIPGSGNHTISLYSLSKA-YGFASWRIGYMVIPI-HLLEAIKKIQDTILIC----------PP- 267 (389)
T ss_pred ccCC---CCCc-cChhhCCCccCcEEEEecchhh-ccCccceeEEEecCH-HHHHHHHHHHhhcccC----------CC-
Confidence 6431 1110 111111 111224666778898 56555 99987754 3332211111001000 01
Q ss_pred chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
..+..++...+ +...+++..+++.++++++.+.|++++++
T Consensus 268 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 268 --VVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred --cHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11333433334 34456777778888899999999887663
No 71
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.84 E-value=5.7e-19 Score=174.56 Aligned_cols=253 Identities=16% Similarity=0.101 Sum_probs=184.1
Q ss_pred hhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC
Q 013675 155 FAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234 (438)
Q Consensus 155 ~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~ 234 (438)
....+...+...++..++++.+.+++...++.+... .++ ++++|+|+++..++.++.. +| ++|+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~--~~~~~~t~a~~~~~~~~~~-----~g---~~vl~~~~ 91 (350)
T cd00609 24 ALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP--EEI--VVTNGAQEALSLLLRALLN-----PG---DEVLVPDP 91 (350)
T ss_pred hhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc--ceE--EEecCcHHHHHHHHHHhCC-----CC---CEEEEcCC
Confidence 344555566777888899999888888887743211 125 8999999999999888752 56 89999999
Q ss_pred CcCcHHHHHhhcCcEEEEeeCCCCCccCH--HHHHHhhccCcEEEEEecCCCCCccccCHHHH---HHHHHHcCCeEEEe
Q 013675 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADV--KAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL---GELALSHGTCLHVD 309 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~--~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I---~~la~~~~i~lhVD 309 (438)
.|.++..+++..|.+++.+|.++++..+. +.+++.+++++++|++++++||+|.+.|++++ .++|+++|+++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 92 TYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred CchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 99999999999999999999988776665 78888888899999999999999999986655 48999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
++++++.... .+. .........+.|++..++||++. ++.+.|+++.+++++.+...... .+. .++
T Consensus 172 ~a~~~~~~~~---~~~-~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~-~~~---------~~~ 237 (350)
T cd00609 172 EAYAELVYDG---EPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL-PYT---------TSG 237 (350)
T ss_pred cchhhceeCC---ccc-ccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH-Hhc---------ccC
Confidence 9998765420 000 00122345567999999999965 45678998877644433221110 000 112
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+.....++..+++... +++++..++..++++++.+.|++++...
T Consensus 238 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 282 (350)
T cd00609 238 PSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV 282 (350)
T ss_pred CChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 22233445555554332 7888999999999999999999875543
No 72
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=181.81 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=171.1
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCC-CCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEK-ASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK- 241 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~-~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~- 241 (438)
.++.+.++.+++++.+++++|.++. + + +++ ++||+++..++.++. +++ +..+++ ...|.+-..
T Consensus 42 r~~~f~~~~~~~r~~l~~l~~~~~~~~----v--~~~~gs~T~~~~~~~~~l~-----~~~--~~~vi~-~g~f~~~~~~ 107 (378)
T PRK03080 42 RQKPVKALLKRVIEGTRELLSLPEGYE----V--GIVPGSDTGAWEMALWSLL-----GAR--RVDHLA-WESFGSKWAT 107 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCce----E--EEECCchHHHHHHHHHhcC-----CCC--cceEEE-eCHHHHHHHH
Confidence 3457788899999999999999643 3 4 666 599999999998863 121 134554 457766433
Q ss_pred -HHhhcCc-EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 242 -AAQYFNI-KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 242 -a~~~~Gi-~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
+++.+|+ +++.++.+++..+|+++++ . ++.|.++|.+|.||.+.|+++|++ +++|++++||++++.+..
T Consensus 108 ~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~-- 178 (378)
T PRK03080 108 DVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL-- 178 (378)
T ss_pred HHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccC--
Confidence 3467899 9999998877788887743 2 567899999999999999999999 889999999999764443
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC---------C-CCccCCC
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV---------S-PTVAGSR 389 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~---------~-~~~~gsr 389 (438)
++|+.. +|++++++|||+++|+|+|+++++++.+.+.. .....|....+. . ....++.
T Consensus 179 ---------pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 246 (378)
T PRK03080 179 ---------PLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLE-SYTPARPIPKFFRLTKGGKAIENSFKGQTI 246 (378)
T ss_pred ---------CCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhh-cccCCCCCchhheeccchHHhhhhhcCCcc
Confidence 355553 89999999999999999999999865443211 111112111010 0 0111222
Q ss_pred ---CCchHHHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 390 ---PGGLIAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 390 ---~~~~ia~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+-..+.++.++++++-+. |++++.++..++++++++.|++++++++
T Consensus 247 ~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~ 296 (378)
T PRK03080 247 NTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATP 296 (378)
T ss_pred cCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 223345557799998887 8999999999999999999999876654
No 73
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.83 E-value=3.6e-19 Score=179.75 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~ 249 (438)
+++.+.++++.|.+. . +++++|++|+.+++.++. ++| ++|+++.+.|.. +...+...|++
T Consensus 63 ~~Le~~lA~l~g~~~-~-------v~~~sG~~Ai~~~l~all-----~pG---D~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 63 DLLGEALAELEGGAG-G-------VITATGMGAINLVLNALL-----QPG---DTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred HHHHHHHHHHhCCCc-e-------EEEcCHHHHHHHHHHHHh-----CCC---CEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 345567888888742 2 788888999999888875 377 899999999887 44555666888
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++. .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.... ..+
T Consensus 127 v~~v~~-----~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~---------~~p 192 (405)
T PRK08776 127 LITADL-----TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL---------QKP 192 (405)
T ss_pred EEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc---------CCc
Confidence 888875 389999999999999999999999999999999999999999999999999864321 112
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
+ ..|+|++..|+||++++|.+ .|+++.+++++.+...... ... |.... ...+|+.+ .|.+
T Consensus 193 l---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~-~~~----------g~~~s--~~~a~l~~--~gl~ 254 (405)
T PRK08776 193 L---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA-NAL----------GLTGS--PFDAFLTL--RGLR 254 (405)
T ss_pred c---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH-Hhc----------CCCCC--HHHHHHHH--hhhC
Confidence 3 25889999999999777755 5777776665543321111 001 11111 23566665 4667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.++.+.++..+++..+.+.|++.|.++-+.|
T Consensus 255 tl~~r~~~~~~na~~la~~L~~~p~v~~V~y 285 (405)
T PRK08776 255 TLDARLRVHQENADAIAALLDGHAAVNQVYY 285 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence 8899999999999999999999998765443
No 74
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.83 E-value=7.1e-19 Score=176.71 Aligned_cols=233 Identities=15% Similarity=0.102 Sum_probs=166.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
.|...++|+ .+++++|.+. + ++|+|||+|+.+++.++.- ++| ++|+++.++|.+...++..
T Consensus 32 g~~~~~le~----~la~~~g~~~------~--v~~~sgt~al~lal~al~~----~~G---d~Viv~~~~~~~~~~~~~~ 92 (379)
T PRK11658 32 GPKNQALEQ----AFCQLTGNQH------A--IAVSSATAGMHITLMALGI----GPG---DEVITPSLTWVSTLNMIVL 92 (379)
T ss_pred CHhHHHHHH----HHHHHhCCCe------E--EEECCHHHHHHHHHHHcCC----CCC---CEEEECCCcHHHHHHHHHH
Confidence 344555554 6888888863 2 7899999999999988721 367 8999999999999999999
Q ss_pred cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
.|++++.+|+++ ++.+|+++++++++++|++|+.++ ++|...|+++|.++|+++|+++++|++++.+... .|
T Consensus 93 ~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~----~~ 165 (379)
T PRK11658 93 LGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY----KG 165 (379)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE----CC
Confidence 999999999986 567999999999999999887554 5899999999999999999999999998633321 11
Q ss_pred CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc-ccccCCCcc-----C-CC----CccCCCCCch
Q 013675 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA-VTEWSGGLY-----V-SP----TVAGSRPGGL 393 (438)
Q Consensus 325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~-~~~~~g~~~-----~-~~----~~~gsr~~~~ 393 (438)
......|+++++++.+|.+.++. .|+++.+++++....... ...+....+ . .+ ...|....
T Consensus 166 -----~~~g~~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~-- 237 (379)
T PRK11658 166 -----RHIGARGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYN-- 237 (379)
T ss_pred -----eecCCCCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccC--
Confidence 12234567889999999875554 466666666654322111 011110000 0 00 01122111
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
+..+-+++.....+++++..++..++++++.+.|+++|.
T Consensus 238 ~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~ 276 (379)
T PRK11658 238 LADINAAIALVQLAKLEALNARRREIAARYLQALADLPF 276 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 225556666666788999999999999999999998764
No 75
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.83 E-value=3.3e-19 Score=178.81 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi 248 (438)
.+++.+.+++++|.+. + +++++|+.|+.+++. +. ++| ++|+++...|.+... .+..+|+
T Consensus 49 ~~~le~~la~l~g~~~------~--l~~~sG~~al~~~l~-ll-----~~G---d~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 49 RTALESLLAKLDKADR------A--FAFSSGMAALDVITR-LL-----NNG---DEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHH-Hh-----CCC---CEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 4456667999999842 2 677778888776554 32 367 899999999987654 4566799
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++++ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.... ..
T Consensus 112 ~v~~vd~~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~---------~~ 177 (378)
T TIGR01329 112 VVVHVDTT-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL---------CN 177 (378)
T ss_pred EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc---------CC
Confidence 99999874 89999999999999999999999999999999999999999999999999854332 11
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
++ ..|+|+++.|+|||+++|.+ .|+++++++.+.+....... .+ |...... .+|..+ .+.
T Consensus 178 ~l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--~~---------G~~~~~~--~a~l~~--~~l 239 (378)
T TIGR01329 178 PL---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--ST---------GSGLAPF--DCWLLL--RGI 239 (378)
T ss_pred hh---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH--hc---------CCcCCHH--HHHHHH--ccC
Confidence 23 34889999999999888877 88888876654332211110 01 1111111 334433 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
+.+..+.++..+++..+.+.|++.|.++-++
T Consensus 240 ~tl~~R~e~~~~na~~la~~L~~~~~v~~v~ 270 (378)
T TIGR01329 240 KTLAIRIEKQQENARAIAMFLSTHPRVKKVR 270 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 7788889999999999999999988875443
No 76
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.83 E-value=3.7e-19 Score=179.14 Aligned_cols=216 Identities=23% Similarity=0.236 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi 248 (438)
.+++.+.+++++|.+. + ++|+||++|+..++.++. ++| ++|+++...|.+.. +.+..+|+
T Consensus 63 ~~~le~~la~l~g~~~------~--v~~ssG~~Ai~~al~al~-----~~G---d~Vi~~~~~y~~t~~~~~~~~~~~G~ 126 (390)
T PRK08133 63 VTMFQERLAALEGAEA------C--VATASGMAAILAVVMALL-----QAG---DHVVSSRSLFGSTVSLFEKIFARFGI 126 (390)
T ss_pred HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEccCcchhHHHHHHHHHHHcCc
Confidence 3445567899999753 3 789999999999988875 367 89999999887643 45667899
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++++ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.... + .
T Consensus 127 ~v~~vd~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~---~-----~- 192 (390)
T PRK08133 127 ETTFVDLT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPAL---Q-----Q- 192 (390)
T ss_pred EEEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccccc---C-----C-
Confidence 99999875 79999999999999999999999999999999999999999999999999754322 0 1
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--c-EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--T-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~-g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
+ ...|+|+++.|+||++ ++.| . |+++.+ ++.......... ..|.... ...+|.++ .|
T Consensus 193 p---l~~g~Divv~S~sK~~-~g~g~~~GG~vv~~-~~~~~~~~~~~~-----------~~g~~~~--~~~a~~~l--~g 252 (390)
T PRK08133 193 P---LKLGADVVIHSATKYL-DGQGRVLGGAVVGS-KELMEEVFGFLR-----------TAGPTLS--PFNAWVFL--KG 252 (390)
T ss_pred c---hhhCCcEEEeecceee-cCCcceEeEEEEcC-HHHHHHHHHHHH-----------HhCCCCC--HHHHHHHH--cc
Confidence 2 2347899999999994 5544 4 554444 433221111000 0111111 12456555 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+.+..+.++..+++..+.+.|++.|+++-+.|
T Consensus 253 l~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y 285 (390)
T PRK08133 253 LETLSLRMEAHSANALALAEWLEAHPGVERVFY 285 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 567888888999999999999999998876554
No 77
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.83 E-value=3.3e-19 Score=178.65 Aligned_cols=221 Identities=18% Similarity=0.111 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--- 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--- 242 (438)
.|....+|+ .++++.|.+ . + ++|+||++|+.+++.++. ++| ++|+++.+.|.+....
T Consensus 52 npt~~~Le~----~lA~leg~e--~----i--vvt~gg~~Ai~~~l~all-----~~G---d~Il~~~~~y~~~~~~~~~ 111 (388)
T PRK08861 52 NPNRGLLEQ----TLSELESGK--G----A--VVTNCGTSALNLWVSALL-----GPD---DLIVAPHDCYGGTYRLFNT 111 (388)
T ss_pred CchHHHHHH----HHHHHhCCC--e----E--EEECCHHHHHHHHHHHHc-----CCC---CEEEEcCCchHHHHHHHHH
Confidence 344455554 688888853 2 4 899999999999998875 377 8999999998864433
Q ss_pred -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
....|++++.++. .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.++..
T Consensus 112 ~~~~~gi~v~~vd~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~--- 183 (388)
T PRK08861 112 RANKGDFKVQFVDQ-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ--- 183 (388)
T ss_pred HHhcCCeEEEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC---
Confidence 3334788888763 4899999999999999999999999999999999999999999999999998754321
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
. ++ ..|+|+++.|+|||+.||.+ .|+++.+++++.+...... ... |.-.. ...+|.
T Consensus 184 -----~-pl---~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~-~~~----------G~~~~--p~~a~l 241 (388)
T PRK08861 184 -----K-PL---ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG-NCI----------GATGT--PFDSYM 241 (388)
T ss_pred -----C-Cc---ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHH-hcc----------CCCCC--hHHHHH
Confidence 1 23 34899999999999888765 5766666654432211111 111 11111 125665
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+ .|.+-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus 242 ~~--rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~y 278 (388)
T PRK08861 242 TL--RGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYH 278 (388)
T ss_pred HH--hcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 55 56788889999999999999999999998865544
No 78
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.83 E-value=1.3e-18 Score=175.74 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=171.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
.|....+..++++.+.+++.+..|. ++++ + ++|+|+++|+..++.++.. +| ++|+++.+.|..+
T Consensus 63 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~~~g~~~a~~~~~~~~~~-----~g---d~vl~~~p~y~~~ 128 (393)
T PRK05764 63 KYTPAAGIPELREAIAAKLKRDNGLDYDPSQ----V--IVTTGAKQALYNAFMALLD-----PG---DEVIIPAPYWVSY 128 (393)
T ss_pred CcCCCCChHHHHHHHHHHHHHHhCCCCCHHH----E--EEeCCcHHHHHHHHHHhcC-----CC---CEEEecCCCCcch
Confidence 3545567778888888888777664 4443 6 8999999999998888753 66 8999999999999
Q ss_pred HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
..+++.+|++++.+|+++ ++.+|+++++++++++++++++++|+||||.+.+ +++|.++|++||+++++|.+|+.
T Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 129 PEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccc
Confidence 999999999999999974 5789999999999889999999999999999865 78999999999999999999976
Q ss_pred hhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
+... .........+.....+.+++..++.|.+ +.+| +|+++.+ +++.+........+ +....
T Consensus 209 ~~~~--~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~-~~~~~~~~~~~~~~-----------~~~~~- 272 (393)
T PRK05764 209 LVYD--GAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGP-KELIKAMSKLQSHS-----------TSNPT- 272 (393)
T ss_pred eeeC--CCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecC-HHHHHHHHHHHhhc-----------ccCCC-
Confidence 5431 0000001011112234577888899994 5445 7887644 44433211111000 00111
Q ss_pred hHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 393 LIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 393 ~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..+++++...+. .+.+++..++..++++.+.+.|++++++.+
T Consensus 273 -~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 316 (393)
T PRK05764 273 -SIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLEC 316 (393)
T ss_pred -hHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 124444444442 455667777788888999999998877653
No 79
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.83 E-value=6.7e-19 Score=174.70 Aligned_cols=262 Identities=19% Similarity=0.147 Sum_probs=175.0
Q ss_pred eeeeecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHH
Q 013675 131 SGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLA 210 (438)
Q Consensus 131 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~a 210 (438)
+|.-|.|....+.+.+.+.+.+..+.+ +...+....+.....+++++.+++++|.+. . +++++||+++..+
T Consensus 7 ~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~--iv~~sg~~a~~~~ 77 (349)
T cd06454 7 CSNDYLGLANHPEVIEAAKEALDKYGV-GAGGSRLISGTSDLHEELEEELAEFHGKEA------A--LVFSSGYAANDGV 77 (349)
T ss_pred ccCCccccCCCHHHHHHHHHHHHHhCC-CCCCcCeecCCchHHHHHHHHHHHHhCCCC------E--EEeccHHHHHHHH
Confidence 344455554322355555666654322 212222222445566778888999999853 2 6777889999988
Q ss_pred HHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-----CcEEEEEecCCCC
Q 013675 211 VKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-----NTVLIVGSAPGFP 285 (438)
Q Consensus 211 l~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~ 285 (438)
++++. .+| ++|+++.+.|+++...++..|++++.++. +|.+++++++++ +++++++++++|+
T Consensus 78 ~~~~~-----~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~ 144 (349)
T cd06454 78 LSTLA-----GKG---DLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSM 144 (349)
T ss_pred HHHhc-----CCC---CEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccC
Confidence 87765 367 89999999999999999999999988763 478889988874 5789999999999
Q ss_pred CccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR 365 (438)
Q Consensus 286 tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~ 365 (438)
+|.+.|+++|+++|+++|+++++|++++.+..+. .+...+.++....+.|+++.++||+ +++.| |+++.+ +++.
T Consensus 145 tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~---~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~g-G~i~~~-~~~~ 218 (349)
T cd06454 145 DGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGP---HGRGVEEFGGLTDDVDIIMGTLGKA-FGAVG-GYIAGS-KELI 218 (349)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEccccccccCC---CCCChhhhccccccCcEEEeechhh-hcccC-CEEECC-HHHH
Confidence 9999999999999999999999999986433321 0100112333455789999999999 55555 665544 4443
Q ss_pred ccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 366 KHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 366 ~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+........+ ...++.+...++++.++++.+.. +++..++..++++++.+.|+++
T Consensus 219 ~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~ 273 (349)
T cd06454 219 DYLRSYARGF--------IFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL 273 (349)
T ss_pred HHHHHhchhh--------hccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc
Confidence 2211111111 01122223335566667765532 4667888899999999999875
No 80
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.82 E-value=4.2e-19 Score=180.28 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi 248 (438)
.+++.+.++++.|.+.. +++++|+.|+.+++.++. ++| ++||++...|.+.. +.+..+|+
T Consensus 71 ~~~le~~la~l~g~~~~--------v~fsSG~~Ai~~al~~ll-----~~G---d~VI~~~~~y~~t~~~~~~~l~~~Gi 134 (437)
T PRK05613 71 VEALENRIASLEGGVHA--------VAFASGQAAETAAILNLA-----GAG---DHIVTSPRLYGGTETLFLVTLNRLGI 134 (437)
T ss_pred HHHHHHHHHHHhCCCeE--------EEeCCHHHHHHHHHHHhc-----CCC---CEEEECCCccHHHHHHHHHHHHhcCe
Confidence 44555679999998522 677777799988887764 367 89999999998863 45577899
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++ +++ |+++++++|+++|++|++.+++||+|.+.|+++|+++|+++|++++||++++.+..
T Consensus 135 ~v~~vd-~~~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~----------- 199 (437)
T PRK05613 135 EVTFVE-NPD---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL----------- 199 (437)
T ss_pred EEEEEC-CCC---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-----------
Confidence 999998 332 89999999999999999999999999999999999999999999999999754322
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccc---------cchhcccccCCCc-----cCC----------
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRK---------HQFVAVTEWSGGL-----YVS---------- 382 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~---------~~~~~~~~~~g~~-----~~~---------- 382 (438)
++....|+|++++|+||| ++|.| .|.+++.++.... ......+++.... ...
T Consensus 200 -~~p~~~GaDivv~S~~K~-l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (437)
T PRK05613 200 -VRPLELGADVVVASLTKF-YTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAG 277 (437)
T ss_pred -cChHHhCCCEEEeeccce-ecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHH
Confidence 223346899999999999 46554 3555553322110 0000000000000 000
Q ss_pred -CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 383 -PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 383 -~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
....|...... .+|..+ .|.+.+.-+.++..++|..+++.|+++|.++-+.|
T Consensus 278 ~~~~~G~~~~p~--~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y 330 (437)
T PRK05613 278 LLRDTGATLSPF--NAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF 330 (437)
T ss_pred HHHhcCCCCCHH--HHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence 00012222222 455554 56788899999999999999999999998865544
No 81
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.82 E-value=7.8e-20 Score=182.13 Aligned_cols=236 Identities=16% Similarity=0.083 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCC-hHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSG-GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~g-gt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
+.+.++.+++++.+++++|.+.+. ++ ++|+| +|+|+.+++.++.. ..++| ++|++....|- +.+.++.
T Consensus 40 ~~~~~~~~~~r~~l~~l~~~~~~~---~v--vf~~gs~T~a~~~~~~~l~~--~~~~~---~~i~~g~~~~~-~~~~a~~ 108 (355)
T cd00611 40 KDFEAIVNEAESDLRELLNIPDNY---KV--LFLQGGATGQFAAVPLNLLG--DKGTA---DYVVTGAWSAK-AAKEAKR 108 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCCchHHHHHHHHhcCC--CCCeE---EEEECCHHHHH-HHHHHHh
Confidence 667788899999999999985433 25 88877 99999999998742 01133 55555333332 2446788
Q ss_pred cCcEEEEeeCCCCCcc-C-HHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 246 FNIKLWRVPVDKEFRA-D-VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 246 ~Gi~v~~v~~~~~~~~-d-~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
.|++++.+++++++.. + ++..+..++++|++|.++|.+|.||.+.+ ++++.||+.++||++++.+..
T Consensus 109 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~------ 177 (355)
T cd00611 109 YGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSR------ 177 (355)
T ss_pred cCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCC------
Confidence 8999999998765433 5 34444557788999999999999999822 455669999999999754443
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC--CccCCCCccCCCCCchHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG--GLYVSPTVAGSRPGGLIAGAWAAL 401 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g--~~~~~~~~~gsr~~~~ia~~~aal 401 (438)
++|....++ +..++||+ ++|+|+|+++++++.+.+.... .+.+.. .........|+.+...++++.+++
T Consensus 178 -----~idv~~~~~--~~ss~~K~-lGP~G~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal 248 (355)
T cd00611 178 -----PIDVSKFGV--IYAGAQKN-LGPAGVTVVIVRKDLLGKARKI-TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVL 248 (355)
T ss_pred -----CCCHHHhCE--EEeecccc-cCCCceEEEEECHHHHhhcccC-CCCcccHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 466665554 44668997 6899999999987644321111 111100 000111124666666789999999
Q ss_pred HHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 402 MSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 402 ~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
+++-.+ |++.+.++..++++++++.|+++||+
T Consensus 249 ~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 249 KWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999888 79999999999999999999999886
No 82
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=161.61 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=196.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~ 240 (438)
...+|.+.++.+++.+-+...|....+. .+ ++...|+.+...|+..... +| |++++-...-.+ +.
T Consensus 42 gh~sPe~~qIm~~v~egikyVFkT~n~~---tf--~isgsGh~g~E~al~N~le-----Pg---d~vLv~~~G~wg~ra~ 108 (385)
T KOG2862|consen 42 GHMSPEFVQIMDEVLEGIKYVFKTANAQ---TF--VISGSGHSGWEAALVNLLE-----PG---DNVLVVSTGTWGQRAA 108 (385)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCCCc---eE--EEecCCcchHHHHHHhhcC-----CC---CeEEEEEechHHHHHH
Confidence 3468899999999999999999887654 13 6777888888888877664 78 888877766444 66
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
..++.+|++|..|+.+......++.+++++.. ++++++++++.+.||+..| ++.+.++||+|++.++||++.+
T Consensus 109 D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaS----- 183 (385)
T KOG2862|consen 109 DCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVAS----- 183 (385)
T ss_pred HHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhh-----
Confidence 78899999999999888888999999999986 4789999999999999999 7888999999999999999843
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc--------chhcccccCCCcc---CCC-Ccc
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH--------QFVAVTEWSGGLY---VSP-TVA 386 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~--------~~~~~~~~~g~~~---~~~-~~~ 386 (438)
.|. .+|.+..+|||+.-..++|.+.+|.|.+.+.++++..... .+++...|.+..+ ..+ ...
T Consensus 184 ----lgg--t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yh 257 (385)
T KOG2862|consen 184 ----LGG--TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYH 257 (385)
T ss_pred ----cCC--ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccc
Confidence 332 2688899999999999999999999999988877643221 1222222222211 111 122
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
-+.+-.+++++-+||..+-++|+++++++..+++++++..|++. |++
T Consensus 258 hT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq 304 (385)
T KOG2862|consen 258 HTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQ 304 (385)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence 34556678999999999999999999999999999999999986 554
No 83
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.82 E-value=7.6e-19 Score=176.81 Aligned_cols=216 Identities=21% Similarity=0.218 Sum_probs=159.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~Gi~v 250 (438)
++++.++++.|.+.. +.+++|++|+.+++.++. ++| ++|+++.+.|.+.... +..+|+++
T Consensus 65 ~Le~~lA~~~g~~~~--------i~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~gi~~ 128 (388)
T PRK07811 65 ALEEQLAALEGGAYG--------RAFSSGMAATDCLLRAVL-----RPG---DHIVIPNDAYGGTFRLIDKVFTRWGVEY 128 (388)
T ss_pred HHHHHHHHHhCCCce--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchHHHHHHHHhCcCCCeEE
Confidence 344468889988753 566778999999998885 377 8999999999864433 33358888
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++. .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+... . ++
T Consensus 129 ~~~d~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~--------~-p~ 194 (388)
T PRK07811 129 TPVDL-----SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ--------Q-PL 194 (388)
T ss_pred EEeCC-----CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC--------C-ch
Confidence 88775 3899999999999999999999999999999999999999999999999998754321 1 22
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
..|+|+++.|++|++.+|.+ .|+++.+++++.+..... ....|. ... ...+|.+++ +.+.
T Consensus 195 ---~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~-~~~~g~----------~~s--~~~a~l~~~--~L~t 256 (388)
T PRK07811 195 ---ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL-QNGAGA----------VPG--PFDAYLTLR--GLKT 256 (388)
T ss_pred ---hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH-HHhcCC----------CCC--HHHHHHHHh--ccCc
Confidence 24789999999999766654 577777766543322111 011111 111 124455553 3455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+..+.++..++++.+++.|++.|+++-+.|
T Consensus 257 l~~R~~~~~~na~~la~~L~~~p~v~~V~y 286 (388)
T PRK07811 257 LAVRMDRHSENAEAVAEFLAGHPEVSTVLY 286 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 778888899999999999999998876554
No 84
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.9e-18 Score=169.58 Aligned_cols=234 Identities=21% Similarity=0.133 Sum_probs=175.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
.|.++++|+ ++++++|.+.. +.+++||.|+.++++++. -++| |+||+|+.++.+...++-+
T Consensus 33 G~~v~~FE~----~~ae~~G~k~a--------va~~sgT~AL~laL~al~----ig~G---DeVI~ps~TfvATan~i~~ 93 (374)
T COG0399 33 GPFVRRFEQ----AFAEYLGVKYA--------VAVSSGTAALHLALLALA----IGPG---DEVIVPSFTFVATANAVLL 93 (374)
T ss_pred ChHHHHHHH----HHHHHhCCCeE--------EEecChHHHHHHHHHhcC----CCCC---CEEEecCCchHHHHHHHHH
Confidence 566666666 68999999853 799999999999999654 2477 9999999999999999999
Q ss_pred cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
.|++++.|++|+ ++.+|++.+|++|+++|++|+..|- .|...|+++|.++|++||++++.|+|++ +|
T Consensus 94 ~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa---------~G 161 (374)
T COG0399 94 VGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQA---------HG 161 (374)
T ss_pred cCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchh---------cc
Confidence 999999999996 7999999999999999999998886 8999999999999999999999999964 34
Q ss_pred CCCCCCccCCCC----ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC---ccCCCCccCCCCCchHHHH
Q 013675 325 YPIPPFDFSVQG----VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---LYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 325 ~~~p~~~~~~~g----vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---~~~~~~~~gsr~~~~ia~~ 397 (438)
. .++.+..| +-++|+.+.|.+-+. ..|+++++|+++.+............ ........|.... +-.+
T Consensus 162 a---~y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~r--m~~i 235 (374)
T COG0399 162 A---TYKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYR--LTEI 235 (374)
T ss_pred C---eecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccC--HHHH
Confidence 3 23333333 456777777885444 56888888877655432221111000 0001111222221 2244
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
-+++.....+.+++..++..+++++..+.|++++++.++
T Consensus 236 qAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p 274 (374)
T COG0399 236 QAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLP 274 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 555555556888999999999999999999998876654
No 85
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.82 E-value=8e-19 Score=176.73 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~ 249 (438)
+++.+.++++.|.+. . +++++|+.|+.+++. +. ++| ++|+++.+.|.+. .+.++.+|++
T Consensus 57 ~~le~~lA~l~g~~~-~-------v~~~sG~~ai~~~l~-~l-----~~G---d~Vlv~~~~y~~~~~~~~~~~~~~G~~ 119 (390)
T PRK08064 57 EALEDIIAELEGGTK-G-------FAFASGMAAISTAFL-LL-----SKG---DHVLISEDVYGGTYRMITEVLSRFGIE 119 (390)
T ss_pred HHHHHHHHHHhCCCC-e-------EEECCHHHHHHHHHH-Hh-----CCC---CEEEEccCccchHHHHHHHHHHHcCCE
Confidence 344557999999873 2 566777888877775 22 367 8999999988753 3556678999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|.++|+++|++++||++|+.+... . +
T Consensus 120 v~~v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~--------~-~ 185 (390)
T PRK08064 120 HTFVDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ--------K-P 185 (390)
T ss_pred EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc--------C-c
Confidence 9999874 799999999999999999999999999999999999999999999999998754321 1 2
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
. ..|+|+++.|+|||+.++.| .|+++++++++.+........|.. -.. ...+|..+ .|.+
T Consensus 186 ~---~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~-----------~~~--~~~a~l~~--~gl~ 247 (390)
T PRK08064 186 L---DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA-----------VLG--VQDCWLVL--RGLK 247 (390)
T ss_pred h---hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC-----------CCC--HHHHHHHH--cccC
Confidence 2 34789999999999877876 487777765544332211111111 001 12455544 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
.+..+.++..+++..+.+.|++.|.+.-+
T Consensus 248 tl~~R~~~~~~~a~~la~~L~~~~~v~~v 276 (390)
T PRK08064 248 TLHVRLEHSSETANKIALYLQEHPKVQNV 276 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCcceE
Confidence 67788899999999999999998876543
No 86
>PLN02271 serine hydroxymethyltransferase
Probab=99.82 E-value=2e-18 Score=175.21 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=179.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccce--eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCG--NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD- 240 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g--~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~- 240 (438)
.....+.++|..+++...++||++..+ +| +-..+|+.|++.++.++. ++| |+|+..+..|....
T Consensus 187 ~G~~~iD~iE~la~era~~lF~~~~~~-----~gaNVQp~SGs~AN~aV~~ALl-----~PG---D~IL~ldl~~GGHls 253 (586)
T PLN02271 187 TGNQYIDQIERLCCERALAAFGLDSEK-----WGVNVQPYSCTSANFAVYTGLL-----LPG---DRIMGLDSPSGGHMS 253 (586)
T ss_pred CCChhHHHHHHHHHHHHHHHhCCcccc-----cccceeeccHHHHHHHHHHHhc-----CCC---CEEEEecCCCCCchh
Confidence 344567889999999999999988743 22 566799999999999886 488 99998666544322
Q ss_pred --------HHHhhcCcEEEEee--CC-CCCccCHHHHHH-hhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 241 --------KAAQYFNIKLWRVP--VD-KEFRADVKAIKK-YINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 241 --------~a~~~~Gi~v~~v~--~~-~~~~~d~~~Le~-~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
+.+...|+.+..+| +| +++.+|.+++++ +...+|++|++.+..++ ...|+++|+++|+++|+++++
T Consensus 254 hg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~Lmv 331 (586)
T PLN02271 254 HGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMC 331 (586)
T ss_pred cccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEE
Confidence 23455676666665 65 489999999998 66789999999888877 678999999999999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc----c----
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL----Y---- 380 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~----~---- 380 (438)
|+++..++++ .|. +..-..++|++++++|||+.||.| |+++++++. ..........|.+.. +
T Consensus 332 D~AH~aGLIa----~g~----~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~-~~~~~g~~gs~s~~~~~~d~~~kI 401 (586)
T PLN02271 332 DMAHISGLVA----AKE----CVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGP-KLRKQGMLLSHGDDNSHYDFEEKI 401 (586)
T ss_pred ECcccccccc----cCc----CCCCCcCCcEEEeCCcccCCCCCc-eEEEecccc-cccccCCccccccccccHHHHHHh
Confidence 9998877764 121 111223689999999999999999 888887532 111000001111110 0
Q ss_pred ---CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 381 ---VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 381 ---~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.-|.++|......++++..+++......|++..+++.++|+.|++.|.+. |+++
T Consensus 402 ~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~v 458 (586)
T PLN02271 402 NFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRL 458 (586)
T ss_pred hcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeE
Confidence 12344555555558899999988777788999999999999999999876 6665
No 87
>PLN02509 cystathionine beta-lyase
Probab=99.82 E-value=9.6e-19 Score=178.34 Aligned_cols=218 Identities=17% Similarity=0.190 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcC
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFN 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~G 247 (438)
..+++.++++++.|.+. . +++++|+.++.+++ .+. ++| |+||++.+.|.+... .+...|
T Consensus 134 t~~aLE~~lA~leg~e~------a--i~~~SG~aAi~~il-~ll-----~~G---D~VI~~~~~y~~t~~ll~~~l~~~G 196 (464)
T PLN02509 134 TRDALESLLAKLDKADR------A--FCFTSGMAALSAVT-HLI-----KNG---EEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_pred HHHHHHHHHHHHhCCCE------E--EEeCcHHHHHHHHH-HHh-----CCC---CEEEEcCCchhhHHHHHHHHHHHCC
Confidence 35566678888887543 2 67788888775444 332 378 999999999988764 445679
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~ 327 (438)
++++.++. .|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+.. + .
T Consensus 197 ~~v~~vd~-----~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~------~--~ 263 (464)
T PLN02509 197 VVVKRVNT-----TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL------S--R 263 (464)
T ss_pred eEEEEeCC-----CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc------C--C
Confidence 99998864 378999999999999999999999999999999999999999999999999864432 1 1
Q ss_pred CCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 328 PPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 328 p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
+ ...|+|+++.|.+||+.++.+ .|++.++++.+....+.. .... |+... -..+|..+ .|
T Consensus 264 -p---l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~-~~~~----------g~~l~--p~~A~l~l--r~ 324 (464)
T PLN02509 264 -P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-QNSE----------GSGLA--PFDCWLCL--RG 324 (464)
T ss_pred -h---hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHH-HHhc----------CCCcC--HHHHHHHH--hh
Confidence 1 234789999999999877766 677776665432221111 1111 11111 22466665 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+-+..++++..++++++.+.|+++|.++-+.|
T Consensus 325 L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~y 357 (464)
T PLN02509 325 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYY 357 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence 577889999999999999999999998875544
No 88
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.82 E-value=6.9e-19 Score=177.28 Aligned_cols=215 Identities=19% Similarity=0.119 Sum_probs=162.2
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v 250 (438)
++.+.++++.|.+. + ++++||++|+.+++.++. ++| |+|+++.+.|.... ..+..+|+++
T Consensus 69 ~Le~~lA~l~g~~~------~--l~~~sgt~Ai~~~l~al~-----~~G---D~Vl~~~~~y~~~~~~~~~~~~~~Gi~v 132 (394)
T PRK07050 69 ALAQRLAEIEGGRH------A--LLQPSGLAAISLVYFGLV-----KAG---DDVLIPDNAYGPNRDHGEWLARDFGITV 132 (394)
T ss_pred HHHHHHHHHhCCCe------E--EEeccHHHHHHHHHHHHh-----CCC---CEEEEecCCcccHHHHHHHHHHhcCeEE
Confidence 44456888888642 4 899999999999999875 378 99999999998855 4567789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++.. +.++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+.. +
T Consensus 133 ~~vd~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~------------~ 195 (394)
T PRK07050 133 RFYDPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA------------F 195 (394)
T ss_pred EEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc------------c
Confidence 988753 45789999999999999999999999999999999999999999999999864332 2
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
+....|+|+++.|.+|+..+..+ .|+++++++++.+...... ...|. +.....+|.+++ |.+.
T Consensus 196 ~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~-~~~G~------------~~~~~~a~l~lr--~l~t 260 (394)
T PRK07050 196 KPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR-MRLGI------------GVSADDCSLVLR--GLPS 260 (394)
T ss_pred CHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH-HhcCC------------CCCHHHHHHHHc--CCCc
Confidence 22334789999999999655554 5777777765433221111 11111 111235566663 4456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
+..+.++..+++.++.+.|++.|++.-+.
T Consensus 261 l~~Rl~~~~~~a~~la~~L~~~p~v~~v~ 289 (394)
T PRK07050 261 LQVRLAAHDRSALEVAEWLKARPEIATVL 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 77788999999999999999998876544
No 89
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.82 E-value=5.9e-19 Score=176.77 Aligned_cols=220 Identities=15% Similarity=0.067 Sum_probs=163.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---- 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---- 241 (438)
.|....+|+ .++++.|.. + + ++++||++|+..++.++. ++| |+|+++.+.|.+...
T Consensus 60 npt~~~Le~----~iA~le~~~--~----~--~~~~sG~~Ai~~~l~all-----~~G---D~Vvv~~~~Y~~t~~l~~~ 119 (394)
T PRK09028 60 TPTHFAFQA----AIVELEGGA--G----T--ALYPSGAAAISNALLSFL-----KAG---DHLLMVDSCYEPTRDLCDK 119 (394)
T ss_pred CchHHHHHH----HHHHHhCCC--c----E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEECCCcHHHHHHHHH
Confidence 455555554 577777654 2 3 899999999999998875 378 999999999877664
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
....+|++++.++.+ |.++++++++++|++|++++|+||+|.+.|+++|+++||++|++++||++|+....
T Consensus 120 ~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~---- 190 (394)
T PRK09028 120 ILKGFGIETTYYDPM-----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN---- 190 (394)
T ss_pred hhhhcceEEEEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc----
Confidence 335578888887643 56889999999999999999999999999999999999999999999999875321
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
++....|+|++..|.|||++|+.+ .|++ +.+++..+..... .... |.-... ..+|.
T Consensus 191 --------~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~~~l~~~-~~~~----------G~~~~p--~~a~l 248 (394)
T PRK09028 191 --------SRPFEMGVDISIQAATKYIVGHSDVMLGTA-TANEKHWDQLREH-SYLM----------GQCTSP--DDVYL 248 (394)
T ss_pred --------CCccccCceEEEEeCCeEecCCCCEEEEEE-ECCHHHHHHHHHH-HHhc----------CCCCCH--HHHHH
Confidence 223356999999999999877743 4544 4554432211111 0111 211222 25666
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+ .|.+.+.-+.++..++|..+++.|++.|.++-++|
T Consensus 249 ~~--rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~y 285 (394)
T PRK09028 249 AM--RGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH 285 (394)
T ss_pred HH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence 55 56678899999999999999999999998865544
No 90
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.82 E-value=5e-19 Score=178.20 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=159.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v 250 (438)
++.+.+++++|.+.. +++++|+.|+.+++.++. ++| ++|+++.+.|.+ +...+..+|+++
T Consensus 63 ~le~~lA~l~g~~~a--------v~~~sG~~Ai~~~l~al~-----~~G---d~Vi~~~~~y~~t~~~~~~~~~~~G~~~ 126 (391)
T TIGR01328 63 NLEGRIAFLEGTEAA--------VATSSGMGAIAATLLTIL-----KAG---DHLISDECLYGCTFALLEHALTKFGIQV 126 (391)
T ss_pred HHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHHh-----CCC---CEEEEecCcchHHHHHHHHHHhcCCeEE
Confidence 344469999998642 789999999998888764 367 899999987764 445566789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++++ |+++++++|+++|++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+... . +
T Consensus 127 ~~vd~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~--------~-~- 191 (391)
T TIGR01328 127 DFINMA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLT--------N-P- 191 (391)
T ss_pred EEECCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccC--------C-c-
Confidence 999875 899999999999999999999999999999999999999999999999998643221 1 2
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhc-ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
...++|+++.|++|++.++.+ .|++ +.++++.+..... ...+ .|...... .+|.+++ +.+
T Consensus 192 --~~~g~Divv~S~sK~lgg~g~~~gG~v-~~~~~li~~l~~~~~~~~----------~g~~l~~~--~a~l~l~--~L~ 254 (391)
T TIGR01328 192 --VALGVDVVVHSATKYIGGHGDVVAGLI-CGKAELLQQIRMVGIKDM----------TGSVISPF--DAWLILR--GLK 254 (391)
T ss_pred --hhcCCCEEEccccccccCCCCceEEEE-EcCHHHHHHHHHHHHHhC----------CCCCCCcH--HHHHHHh--CcC
Confidence 234789999999999655543 4554 5555544322111 1111 12222222 3455553 445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+..+.++..++++++.+.|++.|+++.++|
T Consensus 255 tl~~r~~~~~~na~~la~~L~~~p~v~~v~y 285 (391)
T TIGR01328 255 TLNIRMKRHSENAMKVAEYLKSHPAVEKVYY 285 (391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 6678889999999999999999998876554
No 91
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.82 E-value=7.8e-19 Score=177.22 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=157.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v 250 (438)
++.+.+++++|.+.. .++++|+.++..++.+.. ++| ++|+++.+.|.+.. ..+..+|+++
T Consensus 69 ~Le~~lA~l~G~~~~--------~~~~sG~~Ai~~~l~~~l-----~~G---d~Vl~~~~~y~~~~~~~~~~~~~~G~~v 132 (398)
T PRK07504 69 MFEKRMCALEGAEDA--------RATASGMAAVTAAILCQV-----KAG---DHVVAARALFGSCRYVVETLLPRYGIES 132 (398)
T ss_pred HHHHHHHHHhCCCee--------eEecCHHHHHHHHHHHHh-----CCC---CEEEEcCCchhHHHHHHHHHHhhcCeEE
Confidence 444578899998754 467889999987776644 377 89999999888744 3445679999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++ ..|+++++++|+++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+... . +.
T Consensus 133 ~~vd-----~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~--------~-~~ 198 (398)
T PRK07504 133 TLVD-----GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ--------K-PL 198 (398)
T ss_pred EEEC-----CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC--------C-ch
Confidence 8886 26899999999999999999999999999999999999999999999999998643321 1 22
Q ss_pred ccCCCCccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGY 409 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~ 409 (438)
..|+|+++.|+||++.++. ..|.+++.+++.......... ...|...... .+|.++ .+.+.+
T Consensus 199 ---~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~----------~~~g~~~s~~--~A~~~l--~~L~tl 261 (398)
T PRK07504 199 ---ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF----------RHTGPSLSPF--NAWTLL--KGLETL 261 (398)
T ss_pred ---hhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHH----------HHhCCCCCHH--HHHHHH--hccchH
Confidence 3478999999999965542 244344444443321111000 0112222222 555655 455778
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 410 LENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
..+.++..++++.+.+.|++.|+++-+.|
T Consensus 262 ~~R~~~~~~na~~la~~L~~~p~v~~v~y 290 (398)
T PRK07504 262 PVRVRQQTESAAAIADFLAGHPKVARVIY 290 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 88999999999999999999998864443
No 92
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.82 E-value=7.7e-19 Score=176.40 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=162.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-- 243 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-- 243 (438)
.|...++|+ .+++++|.+. + +++++|+.|+..++.++. ++| |+|+++.+.|.+....+
T Consensus 52 np~~~~lE~----~lA~l~g~~~------~--l~~~sG~~Ai~~~l~~ll-----~~G---D~Vlv~~~~y~~~~~~~~~ 111 (385)
T PRK08574 52 NPTLRPLEE----ALAKLEGGVD------A--LAFNSGMAAISTLFFSLL-----KAG---DRVVLPMEAYGTTLRLLKS 111 (385)
T ss_pred CccHHHHHH----HHHHHhCCCc------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCchhHHHHHHH
Confidence 345555554 6888998753 2 788999999999988765 377 99999999999877665
Q ss_pred -hhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 244 -QYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 244 -~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
...|++++.++ .|++++++++++ +|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.++.
T Consensus 112 ~~~~g~~v~~~~------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~---- 181 (385)
T PRK08574 112 LEKFGVKVVLAY------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLL---- 181 (385)
T ss_pred hhccCcEEEEEC------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc----
Confidence 44588887764 368999999998 899999999999999999999999999999999999999864322
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
++....|+|+++.|++|++.+|.+ .|+++++++++.+...... ... |..... ..+|.
T Consensus 182 --------~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-~~~----------g~~~~p--~~a~l 240 (385)
T PRK08574 182 --------YRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR-RRL----------GTIMQP--FEAYL 240 (385)
T ss_pred --------CChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-Hhc----------CCCCCH--HHHHH
Confidence 111235789999999999766654 4656776665433221111 111 111111 14455
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
++ .|.+-+..+.++..+++.++.+.|++.|.++-+.|
T Consensus 241 ~l--~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~y 277 (385)
T PRK08574 241 VL--RGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYY 277 (385)
T ss_pred HH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEEC
Confidence 55 35566788899999999999999999998865544
No 93
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.82 E-value=3.4e-19 Score=176.10 Aligned_cols=224 Identities=24% Similarity=0.252 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HHhhcCc
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNI 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~~~~Gi 248 (438)
...++++.+++++| ++. + ++++|||+++.+++.++. .+| ++|+++.+.|.+..+ .+...|+
T Consensus 33 ~~~~l~~~~a~~~g-~~~-----~--~~~~~gt~a~~~~~~~l~-----~~g---d~v~~~~~~~~~~~~~~~~~~~~g~ 96 (338)
T cd06502 33 TTAKLEARAAELFG-KEA-----A--LFVPSGTAANQLALAAHT-----QPG---GSVICHETAHIYTDEAGAPEFLSGV 96 (338)
T ss_pred HHHHHHHHHHHHhC-CCe-----E--EEecCchHHHHHHHHHhc-----CCC---CeEEEecCcceeeecCCcHHHHcCc
Confidence 34566678999999 332 3 899999999999888875 367 899999999988654 3556899
Q ss_pred EEEEeeCCCCCccCHHHHHHhhcc-------CcEEEEEecCCCCCcc--ccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGI--IDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~--iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
+++.+|.+. +.+|++++++++++ ++++|++++|+|+.|. .+++++|+++|+++|+++|+|++|..+..
T Consensus 97 ~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~-- 173 (338)
T cd06502 97 KLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAA-- 173 (338)
T ss_pred eEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHH--
Confidence 999999864 78999999999975 7899999999997443 46688999999999999999999754322
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
...|. .+.....++|+++.++||++..|. |.+++.++++..........|.+. .+.... .+++
T Consensus 174 -~~~~~---~~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~a 236 (338)
T cd06502 174 -AALGV---ALKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGG---------MRQSGF--LAAA 236 (338)
T ss_pred -HhcCC---CHHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCC---------hhhHHH--HHHH
Confidence 11121 122223467999999999965554 334555555443321111111110 111112 3344
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
++..+...++.+..++..++++++.+.|++++
T Consensus 237 ~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 237 GLAALENDLWLRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445445677888899999999999998864
No 94
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.82 E-value=1.8e-19 Score=179.14 Aligned_cols=232 Identities=18% Similarity=0.182 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...+..+..|+.||++..- .+|+|+|.+|..++.++.. +| ++|+++..+|-|+..++.+.|++++
T Consensus 67 ~I~eAe~~aA~~fGAd~t~-------flvnGsT~g~~a~i~a~~~-----~g---d~VLv~RN~HkSv~~alil~ga~Pv 131 (417)
T PF01276_consen 67 IIKEAEELAARAFGADKTF-------FLVNGSTSGNQAMIMALCR-----PG---DKVLVDRNCHKSVYNALILSGAIPV 131 (417)
T ss_dssp HHHHHHHHHHHHHTESEEE-------EESSHHHHHHHHHHHHHTT-----TT---CEEEEETT--HHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhcCCCeEE-------EEecCchHHHHHHHHHhcC-----CC---CEEEEcCCcHHHHHHHHHHcCCeEE
Confidence 3445666799999999763 7899999999999999874 78 9999999999999999999999999
Q ss_pred EeeCCC-----CCccCH-----HHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 252 RVPVDK-----EFRADV-----KAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 252 ~v~~~~-----~~~~d~-----~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+++... -+.+++ +.++++|+++ ++++++++||+ .|.+.|+++|+++|++++++|+||+|||+..
T Consensus 132 yi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 210 (417)
T PF01276_consen 132 YIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHF 210 (417)
T ss_dssp EEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred EecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccc
Confidence 998742 234666 9999999864 23599999988 8999999999999999999999999998754
Q ss_pred hhhhhhcCCCCCCCccCCCCcc-------EEEeCCCCCCCCCCCcEEEEEeccc-ccccchhcccccCCCccCCCCccCC
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVT-------SISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvd-------sis~s~hK~~~~p~g~g~l~~r~~~-~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
. |.. . +-+....|+| +++.|.||.+.+-..++++.+++.. +....+....... ...|
T Consensus 211 ~-F~~-----l-p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~--------~TTS 275 (417)
T PF01276_consen 211 G-FHP-----L-PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMH--------QTTS 275 (417)
T ss_dssp G-CSG-----G-GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHH--------S-SS
T ss_pred c-CCC-----C-ccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHH--------cCCC
Confidence 3 331 1 1223456778 9999999999999999999999876 3222211111100 1123
Q ss_pred CCCchHHHHHHHHHHH-cHHHHHHHHHHHHHHHHHHHHHh---hcCCCccc
Q 013675 389 RPGGLIAGAWAALMSL-GQEGYLENTKAIMEVSESIQKGL---VLFPMFLP 435 (438)
Q Consensus 389 r~~~~ia~~~aal~~~-g~~g~~~~~~~~~~~a~~l~~~L---~~~~g~~~ 435 (438)
.+..+++++-.+.+++ +.+| ++..++..++++.++++| .+++++++
T Consensus 276 PSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~ 325 (417)
T PF01276_consen 276 PSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKV 325 (417)
T ss_dssp --HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEE
T ss_pred hHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEec
Confidence 4445678888888877 5555 677788888889999998 55666553
No 95
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.81 E-value=1.9e-18 Score=171.78 Aligned_cols=233 Identities=18% Similarity=0.068 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++++.+++++|.+. + +++++||+|+..++.+++. ++| ++|+++..+|.+...++...|++++.
T Consensus 20 ~~~~~~~la~~~~~~~------~--~~~~sgt~al~~~l~~l~~----~~g---d~vl~~~~~~~~~~~~~~~~g~~~~~ 84 (352)
T cd00616 20 VREFEKAFAEYLGVKY------A--VAVSSGTAALHLALRALGI----GPG---DEVIVPSFTFVATANAILLLGATPVF 84 (352)
T ss_pred HHHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHcCC----CCC---CEEEeCCcchHHHHHHHHHcCCeEEE
Confidence 3345557888898642 3 7889999999999988731 256 89999999999999999999999999
Q ss_pred eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
+++++ ++.+|+++++++++++|++|++++ ++|.+.|+++|.++|+++|+++++|++++.+..+ .+. ..
T Consensus 85 ~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~----~~~---~~- 153 (352)
T cd00616 85 VDIDPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATY----KGR---KV- 153 (352)
T ss_pred EecCCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeE----CCE---Ec-
Confidence 99987 889999999999998999998876 4899999999999999999999999998633321 000 00
Q ss_pred cCCCCccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCCcc--CCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 332 FSVQGVTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY--VSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 332 ~~~~gvdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~--~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
. ...|+.++| .||++.+|. .|+++++++++.+.............+ ......|...+.. .+-+++.....+
T Consensus 154 -~-~~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~~~~~l~ 228 (352)
T cd00616 154 -G-TFGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLS--EIQAAIGLAQLE 228 (352)
T ss_pred -c-cCcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcC--HHHHHHHHHHHH
Confidence 1 113555555 559963333 466677765544321111100000000 0001111111211 222222223456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
++++..++..++++++.+.|+++|++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 257 (352)
T cd00616 229 KLDEIIARRREIAERYKELLADLPGIRLP 257 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence 77888899999999999999999888753
No 96
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.81 E-value=1.2e-18 Score=174.97 Aligned_cols=216 Identities=18% Similarity=0.146 Sum_probs=160.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----HhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA----AQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a----~~~~Gi~v 250 (438)
++.+.++++.|.+ . + ++++||++++.+++.++. ++| |+|+++.+.|.+.... +...|+++
T Consensus 56 ~L~~~lA~l~g~~--~----~--i~~~sg~~Ai~~~l~~l~-----~~G---D~Vl~~~~~y~~~~~~~~~~~~~~gi~v 119 (386)
T PRK08045 56 VVQRALAELEGGA--G----A--VLTNTGMSAIHLVTTVFL-----KPG---DLLVAPHDCYGGSYRLFDSLAKRGCYRV 119 (386)
T ss_pred HHHHHHHHHhCCC--e----E--EEECCHHHHHHHHHHHHc-----CCC---CEEEEcCCCcHHHHHHHHHHHhhCCeEE
Confidence 4455788888853 2 4 899999999999998765 377 8999999999864432 23345677
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
..++ ..|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|++++||++|+.+..+ . ++
T Consensus 120 ~~vd-----~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~--------~-pl 185 (386)
T PRK08045 120 LFVD-----QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ--------N-PL 185 (386)
T ss_pred EEeC-----CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC--------C-ch
Confidence 7664 25899999999999999999999999999999999999999999999999998754321 1 22
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
..|+|++..|.|||+.|+.+ .|+++.+++++.+...... ...|. -. ....+|.+++ |.+-
T Consensus 186 ---~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~-~~~g~----------~~--~p~~~~l~~r--gl~t 247 (386)
T PRK08045 186 ---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA-NNIGV----------TG--GAFDSYLLLR--GLRT 247 (386)
T ss_pred ---hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHH-HhcCC----------CC--CHHHHHHHHh--hhcc
Confidence 34789999999999877776 6777666655433221111 11111 11 1236677764 4466
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+..+.++..+++..+++.|++.|.++-+.|
T Consensus 248 l~~R~~~~~~na~~la~~L~~~p~v~~V~y 277 (386)
T PRK08045 248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYH 277 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence 889999999999999999999998865544
No 97
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.81 E-value=1.7e-18 Score=173.41 Aligned_cols=219 Identities=21% Similarity=0.162 Sum_probs=161.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---- 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---- 241 (438)
.|...++|+ .+++++|.+. . +++++|++|+..++.++. ++| ++|+++...|.+...
T Consensus 39 ~p~~~~le~----~la~l~g~~~------a--~~~~sG~~Ai~~~l~~l~-----~~g---d~Vl~~~~~y~~~~~~~~~ 98 (369)
T cd00614 39 NPTVDALEK----KLAALEGGEA------A--LAFSSGMAAISTVLLALL-----KAG---DHVVASDDLYGGTYRLFER 98 (369)
T ss_pred ChhHHHHHH----HHHHHHCCCC------E--EEEcCHHHHHHHHHHHHc-----CCC---CEEEECCCCcchHHHHHHH
Confidence 455555554 6888888753 2 788999999999999875 367 899999999887543
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.+..+|++++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..
T Consensus 99 ~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~---- 169 (369)
T cd00614 99 LLPKLGIEVTFVDPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL---- 169 (369)
T ss_pred HHhhcCeEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc----
Confidence 455779999998865 69999999998999999999999999999999999999999999999999875432
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
..++ ..|+|+++.+.+|++.++.. .|+++.+++++.+........ .|.... ...+|+
T Consensus 170 -----~~~~---~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-----------~g~~~~--p~~a~~ 228 (369)
T cd00614 170 -----QRPL---ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA-----------LGTILS--PFDAWL 228 (369)
T ss_pred -----CChh---hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHh-----------hCCCCC--HHHHHH
Confidence 0122 34789999999999655432 677777653443322111110 111111 225666
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
+++.+ +.+..+.++..++++++.+.|++.|+++-+
T Consensus 229 ~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V 263 (369)
T cd00614 229 LLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERV 263 (369)
T ss_pred HHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 65433 566778889999999999999999877543
No 98
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.81 E-value=1.8e-18 Score=175.74 Aligned_cols=232 Identities=18% Similarity=0.179 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHH
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDK 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~ 241 (438)
.|....+|+ .++++.|.+. . ++|++|+.|+..++.++. .+| ++|+++.+.|.. +..
T Consensus 63 ~p~~~~Le~----~lA~leg~~~------a--l~~~sG~~Ai~~al~~ll-----~~G---D~Vlv~~~~y~~t~~~~~~ 122 (431)
T PRK08248 63 NPTTDVFEK----RIAALEGGIG------A--LAVSSGQAAITYSILNIA-----SAG---DEIVSSSSLYGGTYNLFAH 122 (431)
T ss_pred CchHHHHHH----HHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEccCchhhHHHHHHH
Confidence 444455554 6899998643 2 899999999999998865 377 899999988865 345
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.++.+|++++.++++ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....
T Consensus 123 ~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~---- 193 (431)
T PRK08248 123 TLPKLGITVKFVDPS-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL---- 193 (431)
T ss_pred HHHhCCEEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc----
Confidence 567789999999863 89999999999999999999999999999999999999999999999999863211
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccccc--cc-ch----hcccccCCCccCC-----------
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIR--KH-QF----VAVTEWSGGLYVS----------- 382 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~--~~-~~----~~~~~~~g~~~~~----------- 382 (438)
..++ ..|+|+++.+.|||+.+|.. +|.+++.+.+.. .. .+ ...++|.+..+..
T Consensus 194 -----~~pl---~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (431)
T PRK08248 194 -----LRPI---EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKA 265 (431)
T ss_pred -----CChh---HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHH
Confidence 1122 46899999999999654432 566566433211 00 00 0011111110000
Q ss_pred ----CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 383 ----PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 383 ----~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
....|...... .+|..+ .|.+-+..+.++..++|..+++.|+++|+++-+.|
T Consensus 266 ~~~~~~~~G~~l~p~--~a~l~~--rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~y 321 (431)
T PRK08248 266 RVQLLRDLGAALSPF--NSFLLL--QGLETLHLRMERHSENALAVAKFLEEHEAVEWVSY 321 (431)
T ss_pred HHHHHHhcCCCCCHH--HHHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence 00112222222 455444 56677889999999999999999999999876554
No 99
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.81 E-value=1.1e-18 Score=176.33 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=158.9
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v 250 (438)
++.+.++++.|.+.. +++++|+.|+.+++.++. ++| ++|+++.+.|.. +...+..+|+++
T Consensus 69 ~le~~lA~l~g~~~~--------i~~~sG~~Al~~~l~~ll-----~~G---d~Viv~~~~y~~t~~~~~~~~~~~G~~v 132 (403)
T PRK07503 69 LLEQRMASLEGGEAA--------VALASGMGAITATLWTLL-----RPG---DEVIVDQTLYGCTFAFLHHGLGEFGVTV 132 (403)
T ss_pred HHHHHHHHHhCCCcE--------EEEcCHHHHHHHHHHHHc-----CCC---CEEEEccCccchHHHHHHHHHhhCCEEE
Confidence 344578999998642 678899999999888754 377 899999988865 334566789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++++ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+.. ..++
T Consensus 133 ~~vd~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~---------~~~l 198 (403)
T PRK07503 133 RHVDLT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL---------QRPL 198 (403)
T ss_pred EEeCCC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---------CCch
Confidence 999874 79999999999999999999999999999999999999999999999999864322 1122
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
..++|+++.|.+|++.++.+ .|+++ .++++........ +. ...|.+.... .+|..+ .+.+.
T Consensus 199 ---~~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~--~~-------~~~g~~~s~~--~a~l~l--~~L~t 261 (403)
T PRK07503 199 ---ELGADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEG--LK-------DMTGAVMSPF--DAFLLM--RGLKT 261 (403)
T ss_pred ---hhCCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhh--HH-------hCcCCCCCHH--HHHHHH--cCcch
Confidence 24789999999999654433 67665 5554433211000 00 1112333322 445555 35567
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+..+.++..++++.+.+.|+++|.++.+.|
T Consensus 262 l~~r~~~~~~na~~~a~~L~~~p~v~~V~~ 291 (403)
T PRK07503 262 LALRMDRHCASAQAVAEWLARHPAVELVHY 291 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 778888888999999999999998775543
No 100
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.81 E-value=2.6e-18 Score=172.64 Aligned_cols=216 Identities=22% Similarity=0.221 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~ 249 (438)
.++.+.+++++|.+. + +++++|++|+..++.++. ++| ++|+++...|.+ +.+.+..+|++
T Consensus 57 ~~le~~la~l~g~~~------~--~~~~sG~~Ai~~al~al~-----~~G---d~Vl~~~~~~~~t~~~~~~~~~~~g~~ 120 (380)
T TIGR01325 57 AAFEERIAALEGAER------A--VATATGMSAIQAALMTLL-----QAG---DHVVASRSLFGSTVGFISEILPRFGIE 120 (380)
T ss_pred HHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHHh-----CCC---CEEEEecCCcchHHHHHHHHHHHhCCE
Confidence 344456888998852 2 789999999999998875 367 899999888865 34566778999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+.. + . +
T Consensus 121 v~~v~~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~---~-----~-p 186 (380)
T TIGR01325 121 VSFVDPT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVL---Q-----Q-P 186 (380)
T ss_pred EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---C-----C-c
Confidence 9999875 79999999999999999999999999999999999999999999999999874332 1 1 2
Q ss_pred CccCCCCccEEEeCCCCCCCCCC-Cc-EEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPK-GT-SVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~-g~-g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
+ ..|+|+++.|++|++.++. .. |+++.+ ++..+........ . |..... ..+|.++ .|.+
T Consensus 187 l---~~g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~~~l~~~~~~-~----------g~~~~p--~~a~~~l--~~l~ 247 (380)
T TIGR01325 187 L---KLGADVVVYSATKHIDGQGRVMGGVIAGS-EELMAEVAVYLRH-T----------GPAMSP--FNAWVLL--KGLE 247 (380)
T ss_pred h---hhCCCEEEeeccceecCCCCeEEEEEEeC-HHHHHHHHHHHHh-h----------CCCCCH--HHHHHHH--hccC
Confidence 2 3478999999999965542 23 555544 4433221111000 1 111111 1345555 4557
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+..+.++..++++++.+.|+++|+++-+.|
T Consensus 248 tl~~r~~~~~~~a~~la~~L~~~p~v~~V~y 278 (380)
T TIGR01325 248 TLSLRMQKQFDSALAIAEWLQAQPQVQAVYY 278 (380)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 7788899999999999999999998765443
No 101
>PLN02721 threonine aldolase
Probab=99.81 E-value=1.5e-18 Score=172.53 Aligned_cols=225 Identities=24% Similarity=0.219 Sum_probs=149.8
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---HHhhcCcEEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---AAQYFNIKLW 251 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a~~~~Gi~v~ 251 (438)
++++.+++++|.+. ++++++||+++..++.+... .+| ++|++++++|+++.+ .+...|++++
T Consensus 44 ~l~~~la~~~~~~~--------~~~~~~Gs~a~~~~l~~~~~----~~g---d~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 108 (353)
T PLN02721 44 RLEEEMAKIFGKEA--------ALFVPSGTMGNLISVLVHCD----VRG---SEVILGDNSHIHLYENGGISTLGGVHPR 108 (353)
T ss_pred HHHHHHHHHhCCce--------eEEecCccHHHHHHHHHHcc----CCC---CeEEEcCccceehhcccchhhhcCceeE
Confidence 44556888888753 27888889998887777542 256 899999999987776 5778899999
Q ss_pred EeeCCCCCccCHHHHHHhhc-------cCcEEEEEec-CCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 252 RVPVDKEFRADVKAIKKYIN-------RNTVLIVGSA-PGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 252 ~v~~~~~~~~d~~~Le~~I~-------~~t~~vv~~~-~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
.+|.++++.+|+++++++|+ +++++|++++ ++||+|.+.| +++|.++|+++|+++|+|+++.-....
T Consensus 109 ~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-- 186 (353)
T PLN02721 109 TVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-- 186 (353)
T ss_pred ecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh--
Confidence 99988888999999999998 5889999877 4678898765 789999999999999999987422110
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa 400 (438)
..+. +.+....++|++++++||++.+|.| ++++.++++..........+.++. +... . .+.++
T Consensus 187 -~~~~---~~~~~~~~~d~~~~s~sK~l~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~-~~~~~ 249 (353)
T PLN02721 187 -ALGV---PVHRLVKAADSVSVCLSKGLGAPVG--SVIVGSKSFIRKAKRLRKTLGGGM---------RQVG-V-LAAAA 249 (353)
T ss_pred -hhCC---CHHHHhhhCCEEEEecccccCCcee--eEEecCHHHHHhHHHHHHhcCCCe---------ehhH-H-HHHHH
Confidence 0111 1222234789999999999766544 345555655433211111111110 0011 1 11122
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+..+ +...+..++..++++++.+.|++++++++
T Consensus 250 ~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 282 (353)
T PLN02721 250 LVAL--QENVPKLEDDHKKAKLLAEGLNQIKGLRV 282 (353)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 2212 22233345556778899999998887743
No 102
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.81 E-value=2e-18 Score=174.08 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~ 249 (438)
+++.+.++++.|.+. . +++++|++|+..++.++. ++| |+|+++.+.|.+.. ..+..+|++
T Consensus 67 ~~le~~lA~l~g~~~------~--i~~ssG~~Ai~~~l~all-----~~G---D~Vi~~~~~y~~~~~~~~~~~~~~Gi~ 130 (398)
T PRK08249 67 QAFEEKVRILEGAEA------A--TAFSTGMAAISNTLYTFL-----KPG---DRVVSIKDTYGGTNKIFTEFLPRMGVD 130 (398)
T ss_pred HHHHHHHHHHhCCCe------E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCchHHHHHHHHHHHhhCCeE
Confidence 345557899999753 2 778888999999988765 367 89999999998754 345677999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++. .|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+.. ..+
T Consensus 131 v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~---------~~~ 196 (398)
T PRK08249 131 VTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPIN---------QNP 196 (398)
T ss_pred EEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcccc---------CCc
Confidence 887764 589999999999999999999999999999999999999999999999999874332 011
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
...++|+++.|.+|++.++.. .|.+++.++++.+....... ..|..... ..+|.++ .+.+.
T Consensus 197 ---l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-----------~~g~~~s~--~~a~l~l--~~l~t 258 (398)
T PRK08249 197 ---LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE-----------INGATMDP--MSAYLIL--RGMKT 258 (398)
T ss_pred ---hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH-----------hcCCCCCH--HHHHHHH--hCcch
Confidence 234789999999999544332 33345555554332211110 11222222 2556555 35577
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+..+.++..++++.+.+.|++.|.++-+.|
T Consensus 259 L~~R~~~~~~na~~la~~L~~~p~v~~V~y 288 (398)
T PRK08249 259 LKLRVRQQQESAMALAKYLQTHPKVEAVYY 288 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence 788889999999999999999988775544
No 103
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.81 E-value=4.9e-18 Score=172.08 Aligned_cols=235 Identities=20% Similarity=0.162 Sum_probs=162.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-- 242 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-- 242 (438)
..+...++++.+++.+++++|.+... ++++|||+|+..++.++. ++| ++|+++.+.|++....
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~g~~~~~-------v~~~sgt~a~~~~l~~l~-----~~G---d~Vl~~~~~~~~~~~~~~ 123 (402)
T cd00378 59 GCEYVDEIEDLAIERAKKLFGAEYAN-------VQPHSGSQANLAVYFALL-----EPG---DTIMGLDLSHGGHLTHGS 123 (402)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcee-------eecCCcHHHHHHHHHHhc-----CCC---CEEEEecCccCccccccc
Confidence 45566778877888999999998653 454568999999998875 377 8999999998765332
Q ss_pred ---HhhcCcEEEEeeCCC---CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675 243 ---AQYFNIKLWRVPVDK---EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 243 ---~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
++..|.+++.++++. ++.+|++++++++. +++++++++++++ |...|+++|+++|+++|+++++|+++...
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g 201 (402)
T cd00378 124 FTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPIDFKRFREIADEVGAYLLVDMAHVAG 201 (402)
T ss_pred cccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCcCHHHHHHHHHhcCCEEEEEccchhh
Confidence 566788777777643 68999999999995 5788998888765 56789999999999999999999996332
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
... .|. . +.... ++|+++.++||++.||.| |+++++++++.+........ ...++.....++
T Consensus 202 ~~~----~g~-~-~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~ 263 (402)
T cd00378 202 LVA----GGV-F-PNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFP---------GLQGGPHLHVIA 263 (402)
T ss_pred hhh----ccc-C-CCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCc---------cccCCchHHHHH
Confidence 221 111 1 11222 679999999999756665 66667653444322111110 011111122333
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++..++......++.+..++..++++++.+.|++. |+++
T Consensus 264 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 302 (402)
T cd00378 264 AKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKV 302 (402)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 44445544433467788888999999999999886 6553
No 104
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.81 E-value=1.5e-18 Score=174.78 Aligned_cols=221 Identities=19% Similarity=0.151 Sum_probs=157.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--- 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--- 242 (438)
.|...++|+ .+++++|.+. . +++++|+.|+..++.++. ++| ++|+++.+.|......
T Consensus 60 ~pt~~~Le~----~lA~l~G~~~-a-------l~~~sG~~Ai~~~l~al~-----~~G---d~Vv~~~~~y~~~~~~~~~ 119 (386)
T PRK06767 60 NPTVKLFEE----RMAVLEGGEE-A-------LAFGSGMAAISATLIGFL-----KAG---DHIICSNGLYGCTYGFLEV 119 (386)
T ss_pred CcchHHHHH----HHHHHhCCCc-E-------EEECCHHHHHHHHHHHHh-----CCC---CEEEEcCCcHHHHHHHHHH
Confidence 344555554 6899999753 2 678888999988887765 377 8999999988775444
Q ss_pred -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
+..+|+++..++. .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... +
T Consensus 120 ~~~~~gi~~~~~~~-----~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~---~ 191 (386)
T PRK06767 120 LEEKFMITHSFCDM-----ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL---Q 191 (386)
T ss_pred HHhhcCeEEEEeCC-----CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc---C
Confidence 3445777776654 389999999999999999999999999999999999999999999999999864322 1
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
. ++ ..|+|+++.+++|++.++.. .|+++.+++.+.+........ .|+ .... ..+|+
T Consensus 192 -----~-pl---~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~-~g~----------~~~~--~~a~l 249 (386)
T PRK06767 192 -----R-PL---ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKD-IGG----------IMAP--FDAWL 249 (386)
T ss_pred -----C-ch---hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHH-hCC----------CCCH--HHHHH
Confidence 1 22 35789999999999655443 577766654332211111111 111 1111 23555
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.++ +.+.+..+.++..++++++++.|+++|+++.+.|
T Consensus 250 ~~~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~ 286 (386)
T PRK06767 250 LLR--GLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY 286 (386)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 553 4455667888999999999999999999986543
No 105
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.81 E-value=3e-18 Score=171.79 Aligned_cols=217 Identities=18% Similarity=0.164 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi 248 (438)
..++.+.++++.|.+.. +++++|+.++..++. +. ++| ++|+++.+.|.+.. +.+..+|+
T Consensus 52 ~~~Le~~lA~l~g~~~~--------~~~~sG~aai~~~~~-~l-----~~G---d~Viv~~~~y~~~~~~~~~~~~~~G~ 114 (377)
T PRK07671 52 RAALEELIAVLEGGHAG--------FAFGSGMAAITAVMM-LF-----SSG---DHVILTDDVYGGTYRVMTKVLNRFGI 114 (377)
T ss_pred HHHHHHHHHHHhCCCce--------EEeCCHHHHHHHHHH-Hh-----CCC---CEEEECCCccchHHHHHHHHHhcCCe
Confidence 34455579999997642 677778877765543 32 367 89999999888543 34456799
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++.+ |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.... + .
T Consensus 115 ~v~~v~~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~---~-----~- 180 (377)
T PRK07671 115 EHTFVDTS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW---Q-----S- 180 (377)
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc---C-----C-
Confidence 99988753 89999999999999999999999999999999999999999999999999864322 0 1
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
++ ..|+|+++.|.+||+.+|.+ .|+++++++++........ ...| ...+. ..+|..++ |.
T Consensus 181 p~---~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-~~~g----------~~~~~--~~a~l~~~--~l 242 (377)
T PRK07671 181 PI---SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-NSTG----------GILGP--QDSWLLLR--GL 242 (377)
T ss_pred hh---hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH-Hhhc----------CCCCH--HHHHHHHc--Cc
Confidence 22 34789999999999777754 5666676655443221111 1111 11111 25666653 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+.+..+.++..++++.+.+.|++.|++.-+.|
T Consensus 243 ~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~ 274 (377)
T PRK07671 243 KTLGIRMEEHETNSRAIAEFLNNHPAVNKVYY 274 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence 56677888999999999999999998765543
No 106
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.81 E-value=1.2e-18 Score=174.15 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=167.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~ 243 (438)
...|....+|+ .++++-|... .+++++|+.|+.+++.++. ++| |+|+++...|.+....+
T Consensus 59 ~~nPt~~~le~----~la~LEg~~~--------a~~~~SGmaAi~~~~~~ll-----~~G---D~Vv~~~~~Yg~t~~l~ 118 (395)
T PRK08114 59 RGTLTHFSLQE----AMCELEGGAG--------CALYPCGAAAVANAILAFV-----EQG---DHVLMTGTAYEPTQDFC 118 (395)
T ss_pred CCChhHHHHHH----HHHHHhCCCe--------EEEEhHHHHHHHHHHHHHc-----CCC---CEEEEeCCCcHHHHHHH
Confidence 34566666666 5777877653 2788889999999998875 377 99999999987766544
Q ss_pred ----hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEeccccchhh
Q 013675 244 ----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLGGFVL 317 (438)
Q Consensus 244 ----~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~gg~~~ 317 (438)
+.+|++++.++. .|.++++++|+++|++|++.+|+||+|.+.||++|+++||++| ++++||++++...
T Consensus 119 ~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~- 192 (395)
T PRK08114 119 SKILSKLGVTTTWFDP-----LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV- 192 (395)
T ss_pred HHHHHhcCcEEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc-
Confidence 567999999875 3789999999999999999999999999999999999999984 9999999986432
Q ss_pred hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
-++....|+|+++.|.|||++|+. +.|+++.+ ++.......... ..|.-.. .-
T Consensus 193 -----------~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~-----------~~G~~~~--p~ 247 (395)
T PRK08114 193 -----------LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSY-----------LMGQMVD--AD 247 (395)
T ss_pred -----------ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHH-----------hccCCCC--HH
Confidence 245566799999999999988885 67765544 332211110000 1122112 22
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.+|..+ .|.+-+.-+.++..++|..+++.|+++|.++-++|
T Consensus 248 ~a~l~~--rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~y 288 (395)
T PRK08114 248 TAYMTS--RGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNH 288 (395)
T ss_pred HHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence 566655 56678889999999999999999999998875544
No 107
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.80 E-value=3e-18 Score=171.96 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=160.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH----hhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA----QYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~----~~~Gi~v 250 (438)
++.+.++++.|.+ + + ++|+||++|+.+++.++. ++| |+|+++.+.|.+....+ ...|+++
T Consensus 55 ~le~~lA~l~g~~--~----v--~~~~gg~~Ai~~~l~all-----~~G---D~Vl~~~p~y~~~~~~~~~~~~~~~~~v 118 (382)
T TIGR02080 55 LLQQALAELEGGA--G----A--VVTNTGMSAIHLVTTALL-----GPD---DLLVAPHDCYGGTYRLLNALAKKGCFRV 118 (382)
T ss_pred HHHHHHHHHhCCC--c----E--EEEcCHHHHHHHHHHHHc-----CCC---CEEEEcCCCcHHHHHHHHHHHhhcCeEE
Confidence 4445788888843 2 4 899999999999998875 377 89999999998654433 3335677
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
..++. .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+... . ++
T Consensus 119 ~~~d~-----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~--------~-pl 184 (382)
T TIGR02080 119 LFVDQ-----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ--------N-PL 184 (382)
T ss_pred EEECC-----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC--------C-ch
Confidence 66642 3899999999999999999999999999999999999999999999999998644321 1 22
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
..|+|+++.+++||+.++.+ .|++..+++++.+...... ...| .... ...+|..++ |.+-
T Consensus 185 ---~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-~~~g----------~~~s--p~~a~l~lr--~l~t 246 (382)
T TIGR02080 185 ---ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-NNLG----------VTGG--AFDSYLTLR--GLRT 246 (382)
T ss_pred ---hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH-HccC----------CCCC--HHHHHHHHc--ccch
Confidence 24789999999999877776 7777777665543221111 1111 1111 225666654 5577
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+..+.++..+++..+.+.|++.|.++-+.|
T Consensus 247 l~~R~~~~~~na~~~a~~L~~~p~v~~V~y 276 (382)
T TIGR02080 247 LVARMRLQQRNAQAIVEYLQTQPLVKKIYY 276 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 788889999999999999999998875554
No 108
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.80 E-value=1.2e-18 Score=153.98 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcCcEEEE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFNIKLWR 252 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~Gi~v~~ 252 (438)
.+++++++++++.+.+. + .+++|||+|+.+++++++. +| ++|+++.+.|++.. ..+...|++++.
T Consensus 3 ~~~~~~l~~~~~~~~~~----~--~~~~~~t~a~~~~~~~~~~-----~~---~~v~~~~~~~~~~~~~~~~~~g~~~~~ 68 (170)
T cd01494 3 EELEEKLARLLQPGNDK----A--VFVPSGTGANEAALLALLG-----PG---DEVIVDANGHGSRYWVAAELAGAKPVP 68 (170)
T ss_pred HHHHHHHHHHcCCCCCc----E--EEeCCcHHHHHHHHHHhCC-----CC---CEEEEeecccceehhhHHHhcCCEEEE
Confidence 46778899999744443 4 8899999999999999863 45 78999999999988 888999999999
Q ss_pred eeCCCCCccCH--HHHHHh-hccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 253 VPVDKEFRADV--KAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 253 v~~~~~~~~d~--~~Le~~-I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.+.++..+. +++++. .++++.+++++++++++|...|+++|+++|+++|+++|+|++++++..+. +.
T Consensus 69 v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~--------~~ 140 (170)
T cd01494 69 VPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA--------PG 140 (170)
T ss_pred eccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccc--------cc
Confidence 99876443333 355544 35689999999999999999999999999999999999999998776531 11
Q ss_pred CccCCCCccEEEeCCCCCCCCCCCcEEEEEe
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r 360 (438)
.+....++|+++.++||++.+ +|+|++++|
T Consensus 141 ~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 141 VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 234456789999999999545 899998875
No 109
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.80 E-value=2.8e-18 Score=173.29 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=159.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v 250 (438)
++.+.++++.|.+. . +++++|+.|+..++.++. .+| ++|+++...|.. +.+.++.+|+++
T Consensus 74 ~le~~lA~l~g~~~------a--l~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~~~~t~~~~~~~~~~~G~~v 137 (403)
T PRK07810 74 MFEERLRLIEGAEA------C--FATASGMSAVFTALGALL-----GAG---DRLVAARSLFGSCFVVCNEILPRWGVET 137 (403)
T ss_pred HHHHHHHHHhCCCc------E--EEECChHHHHHHHHHHHh-----CCC---CEEEEccCCcchHHHHHHHHHHHcCcEE
Confidence 34446899999763 2 899999999999888765 367 899999876633 345677789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++++.+.. .
T Consensus 138 ~~vd~~-----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~------------~ 200 (403)
T PRK07810 138 VFVDGE-----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL------------Q 200 (403)
T ss_pred EEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc------------C
Confidence 999753 89999999999999999999999999999999999999999999999999864332 1
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC---cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG---TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
.....|+|+++.|.+|++ ++.| .|+++.+++.+.......... .|..... ..+|.++ .+.+
T Consensus 201 ~~~~~gaDivv~S~tK~l-~g~g~~~gG~v~~~~~~~~~~l~~~~~~-----------~g~~~s~--~~a~l~l--~~L~ 264 (403)
T PRK07810 201 RGLPLGADVVVYSGTKHI-DGQGRVLGGAILGDREYIDGPVQKLMRH-----------TGPALSA--FNAWVLL--KGLE 264 (403)
T ss_pred ChhhcCCcEEEccCCcee-cCCcCceeEEEEeChHHHHHHHHHHHHH-----------hCCCCCH--HHHHHHH--hccC
Confidence 112347899999999995 4444 476665543222111000000 1112222 2555555 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
-+..+.++..+++.++.+.|++.|.++-+.|
T Consensus 265 tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~y 295 (403)
T PRK07810 265 TLALRVRHSNASALRIAEFLEGHPAVRWVRY 295 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence 8899999999999999999999998875554
No 110
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.80 E-value=3.6e-18 Score=170.92 Aligned_cols=220 Identities=17% Similarity=0.087 Sum_probs=161.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--- 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--- 242 (438)
.|....+|+ .++++.|.+. + ++++||++|+..++.++. ++| |+|+++++.|.+....
T Consensus 49 nPt~~~lE~----~lA~l~g~~~------~--~~~~sG~~Ai~~al~all-----~~G---D~Vl~~~~~y~~t~~~~~~ 108 (377)
T TIGR01324 49 TLTHFALQD----AMCELEGGAG------C--YLYPSGLAAVTNSILAFV-----KAG---DHVLMVDSAYEPTRYFCDI 108 (377)
T ss_pred CccHHHHHH----HHHHHhCCCc------E--EEECcHHHHHHHHHHHhc-----CCC---CEEEEcCCCcHHHHHHHHH
Confidence 455556665 5888888752 3 789999999999998875 377 9999999998776543
Q ss_pred -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
+..+|++++.++.+ +.++++++++++|++|++++|+||+|.+.|+++|+++|+++|++++||++|+.+..
T Consensus 109 ~~~~~gi~v~~~d~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~---- 179 (377)
T TIGR01324 109 VLKRMGVDITYYDPL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL---- 179 (377)
T ss_pred HHHhcCcEEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc----
Confidence 45678988887643 23889999999999999999999999999999999999999999999999875432
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
++....|+|++..|.|||+.++.+ .|++..+ ++......... ...|.-... ..+|.
T Consensus 180 --------~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l~~~~-----------~~~G~~l~p--~~a~~ 237 (377)
T TIGR01324 180 --------FKPLEHGVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQLREHS-----------YLMGQMVDA--DDAYT 237 (377)
T ss_pred --------cCccccCceEEEecCceeccCCCCceEEEEEeC-HHHHHHHHHHH-----------HHhCCCCCH--HHHHH
Confidence 122346899999999999777754 4665554 33322111100 011211121 25676
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.++ |.+-+..+.++..++|..+++.|++.|.++-+.|
T Consensus 238 ~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y 274 (377)
T TIGR01324 238 TLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLH 274 (377)
T ss_pred HHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEEC
Confidence 664 4466777789999999999999999988765443
No 111
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.80 E-value=1.4e-17 Score=168.85 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=170.4
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
.|...++..++.+.+.+++++.+|.+ + ++ + ++|+|+++++.+++.++.+ +| |+|+++.++|+.
T Consensus 73 ~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~----I--~it~Ga~~al~~~~~~l~~-----~G---d~Vlv~~P~y~~ 138 (405)
T PRK06207 73 AYTEYRGDADIRELLAARLAAFTGAPVDAADE----L--IITPGTQGALFLAVAATVA-----RG---DKVAIVQPDYFA 138 (405)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----E--EEeCCcHHHHHHHHHHhcC-----CC---CEEEEeCCCchh
Confidence 35455677788999999999999964 3 44 6 8999999999999988763 77 999999999999
Q ss_pred HHHHHhhcCcEEEEeeCC-----CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675 239 YDKAAQYFNIKLWRVPVD-----KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL 310 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~-----~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~ 310 (438)
+...++.+|.+++.+|++ .++.+|+++|+++++++++++++++|+||||.+.+ +++|+++|+++|+++++|+
T Consensus 139 ~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De 218 (405)
T PRK06207 139 NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQ 218 (405)
T ss_pred HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 999999999999999986 25789999999999989999999999999999987 6788899999999999999
Q ss_pred cccchhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675 311 CLGGFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g 387 (438)
+|+.+... +.+.+++ ... ...-.++..++.|... .+..+|+++.. +++.+........+...
T Consensus 219 ~Y~~~~~~-----~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~~~~~~~~~~~~~~--------- 283 (405)
T PRK06207 219 LYSRLLYD-----GTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-PAIIDRMEKLQAIVSLR--------- 283 (405)
T ss_pred cccccccC-----CCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC-HHHHHHHHHHHhHhccC---------
Confidence 99865431 1001111 111 1122477778899943 33459997654 44433221111111000
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+.....++..++. -+...+++..++..+.++.+.+.|++++++++
T Consensus 284 -~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 329 (405)
T PRK06207 284 -AAGYSQAVLRTWFS-EPDGWMKDRIARHQAIRDDLLRVLRGVEGVFV 329 (405)
T ss_pred -CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 00111112222221 13334677777788888889999988766553
No 112
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.80 E-value=4.6e-18 Score=173.15 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH---H-
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---A- 242 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---a- 242 (438)
+...++|+.+++.+++++|.+... +++++||+|+..++.++. ++| ++|+++.++|.++.. .
T Consensus 67 ~~~~~~e~~~~~~la~~~g~~~~~-------i~~~sgt~al~~~l~~l~-----~~g---d~Vl~~~~~~~~~~~~~~~~ 131 (416)
T PRK00011 67 EYVDVVEQLAIDRAKELFGAEYAN-------VQPHSGSQANAAVYFALL-----KPG---DTILGMDLAHGGHLTHGSPV 131 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcee-------eecCCchHHHHHHHHHhc-----CCC---CEEEEeccccCCcccccccc
Confidence 345667777888999999998654 444567889998888774 377 899999999876432 1
Q ss_pred -HhhcCcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 243 -AQYFNIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
....|++++.+++++ ++.+|++++++++++ +|++|+++.++ +|...|+++|+++|+++|+++++|++++.+...
T Consensus 132 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~- 208 (416)
T PRK00011 132 NFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVA- 208 (416)
T ss_pred ccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccc-
Confidence 223467888888874 689999999999975 78888876544 567789999999999999999999997533221
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
.|. . +..+. ++|+++.++||++.+|.| |+++++++++......... .+ ..++.....++++..
T Consensus 209 ---~g~-~-~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~--~~-------~~~~~~~~~~aa~~~ 271 (416)
T PRK00011 209 ---AGV-H-PSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVF--PG-------IQGGPLMHVIAAKAV 271 (416)
T ss_pred ---cCc-c-CCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhC--cc-------ccCCccHHHHHHHHH
Confidence 111 1 12222 689999999999766665 6667765554432211111 11 111222234556566
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++.....+++++..++..++++++++.|++. |+++
T Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 306 (416)
T PRK00011 272 AFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRV 306 (416)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCee
Confidence 6655556678899999999999999999886 5653
No 113
>PRK07179 hypothetical protein; Provisional
Probab=99.80 E-value=6.7e-18 Score=171.45 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++.+.+++++|.+. + ++|+||++|+..+++++.. +| +.|+++...|++....++..|++++.
T Consensus 101 ~~~le~~la~~~g~~~------~--~~~~sG~~An~~~l~~l~~-----~g---~~v~~~~~~h~s~~~~~~~~g~~~~~ 164 (407)
T PRK07179 101 KPQFEKKLAAFTGFES------C--LLCQSGWAANVGLLQTIAD-----PN---TPVYIDFFAHMSLWEGVRAAGAQAHP 164 (407)
T ss_pred HHHHHHHHHHHhCCCc------E--EEECCHHHHHHHHHHHhCC-----CC---CEEEEECCcCHHHHHHHHHCCCeEEE
Confidence 3344467899998853 2 7899999999999998763 56 78999999999999988888988766
Q ss_pred eeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCC
Q 013675 253 VPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPF 330 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~ 330 (438)
++. .|++++++++++ ++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+... ..|.. ...+
T Consensus 165 ~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g---~~g~g~~~~~ 236 (407)
T PRK07179 165 FRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG---PQGAGLVAEL 236 (407)
T ss_pred ecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcC---CCCCchHHhc
Confidence 543 489999999986 5889999999999999999999999999999999999999743321 01100 0012
Q ss_pred ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYL 410 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~ 410 (438)
+.. .++|+++.+.||++ ++. +|+++.++ ++........ ++ . ...++.+...++++.++++.+ +...
T Consensus 237 ~~~-~~vdi~~~S~sK~~-g~~-~G~l~~~~-~~~~~~~~~~--~~-~-----~~~~t~~~~~~aa~~aal~~~--~~~~ 302 (407)
T PRK07179 237 GLT-SRVHFITASLAKAF-AGR-AGIITCPR-ELAEYVPFVS--YP-A-----IFSSTLLPHEIAGLEATLEVI--ESAD 302 (407)
T ss_pred CCC-CCCCEEEeechHhh-hcc-CeEEEeCH-HHHHHHHHhC--cC-e-----eeCCCCCHHHHHHHHHHHHHH--hcCH
Confidence 211 35799999999995 554 78877654 3332211110 00 0 011222233445555666654 2235
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 411 ENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 411 ~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+..++..++++++.+.|+++ |++
T Consensus 303 ~~~~~l~~~~~~l~~~L~~~-g~~ 325 (407)
T PRK07179 303 DRRARLHANARFLREGLSEL-GYN 325 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCC
Confidence 67788999999999999887 554
No 114
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.80 E-value=6e-18 Score=170.22 Aligned_cols=225 Identities=19% Similarity=0.178 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++++++++|.++++ + ++|+|+|+++.+++.++. .+| ++|+++.+.|..+..+++..|.+++.+
T Consensus 69 ~~lr~~ia~~l~~~~~~----v--~~~~g~t~al~~~~~~~~-----~~g---d~vl~~~p~y~~~~~~~~~~g~~~~~v 134 (380)
T PRK06225 69 PELRELILKDLGLDDDE----A--LITAGATESLYLVMRAFL-----SPG---DNAVTPDPGYLIIDNFASRFGAEVIEV 134 (380)
T ss_pred HHHHHHHHHhcCCCCCc----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCCcchHHHHHHhCceEEee
Confidence 35666788889998765 6 899999999999998875 266 889999999999999999999999999
Q ss_pred eCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC
Q 013675 254 PVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI 327 (438)
Q Consensus 254 ~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~ 327 (438)
|++. ++.+|+++++++++++++++++++|+||||.+.+ +++|+++|+++|+++++|++|+.+... . .
T Consensus 135 ~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~------~-~ 207 (380)
T PRK06225 135 PIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE------H-T 207 (380)
T ss_pred ccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc------C-C
Confidence 9742 4689999999999999999999999999999754 889999999999999999998765321 1 1
Q ss_pred CCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 328 PPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 328 p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
+.... .....++..+++|++ +++| +|+++.++ ++.+........ . .+. +....+++.+++.. .
T Consensus 208 ~~~~~-~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~-~l~~~~~~~~~~----~------~~~-~~~~~~~a~~~l~~-~ 272 (380)
T PRK06225 208 LAAEY-APEHTVTSYSFSKIF-GMAGLRIGAVVATP-DLIEVVKSIVIN----D------LGT-NVIAQEAAIAGLKV-K 272 (380)
T ss_pred chhhc-CCCCEEEEeechhhc-CCccceeEEEecCH-HHHHHHHHHHhc----c------cCC-CHHHHHHHHHHHhc-c
Confidence 00111 122356666888994 6555 79887754 343321111100 0 010 00011122223322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+.+++..+...++.+.+.+.|++++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 273 DEWIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 23344555555667777888888876643
No 115
>PRK05968 hypothetical protein; Provisional
Probab=99.80 E-value=3.3e-18 Score=172.27 Aligned_cols=215 Identities=19% Similarity=0.162 Sum_probs=157.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~ 249 (438)
.++.+.+++++|.+.. +++++|+.|+.+++.+.. ++| ++|+++...|.+ +...+...|++
T Consensus 66 ~~le~~lA~l~g~~~a--------v~~~sG~~Ai~~al~al~-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~ 129 (389)
T PRK05968 66 RAFEEMLAKLEGAEDA--------RGFASGMAAISSTVLSFV-----EPG---DRIVAVRHVYPDAFRLFETILKRMGVE 129 (389)
T ss_pred HHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHHh-----CCC---CEEEEeCCCchHHHHHHHHHHHHcCce
Confidence 3444578999998642 566788899998887754 377 899999998876 34567778999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++.+ |++++++++ ++|++|++++|+++++.+.|+++|+++|+++|+++++|++++.+... . +
T Consensus 130 v~~vd~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~--------~-p 194 (389)
T PRK05968 130 VDYVDGR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQ--------R-P 194 (389)
T ss_pred EEEeCCC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhcc--------C-c
Confidence 9998754 899999998 67899999999999999999999999999999999999998654321 1 2
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
. ..|+|+++.|++|++.+|.+ .|+++ .++++..........|.|+ .... ..+|..+ .+.+
T Consensus 195 ~---~~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g~----------~~~~--~~A~~~l--~~L~ 256 (389)
T PRK05968 195 I---TLGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLGA----------KLSP--FEAWLLL--RGLR 256 (389)
T ss_pred h---hcCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCCC----------CCCh--HHHHHHH--cccC
Confidence 2 34789999999999777654 56655 4444332211111112221 1111 1444444 4456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
.+..+.++..++++++.+.|+++|+++.+.
T Consensus 257 tl~~r~~~~~~~a~~la~~L~~~p~v~~v~ 286 (389)
T PRK05968 257 TLPLRMKAHEASALEIARRLKAHPVVERVC 286 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 778899999999999999999999886544
No 116
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.80 E-value=4.9e-18 Score=172.45 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK---- 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~---- 241 (438)
.|...++| +.++++.|.+.. +++++|+.|+.+++.++. ++| ++|+++...|.+...
T Consensus 68 ~p~~~~Le----~~lA~l~g~~~a--------v~~sSG~aAi~~al~all-----~~G---d~Vv~~~~~y~~t~~~~~~ 127 (436)
T PRK07812 68 NPTQDVVE----QRIAALEGGVAA--------LLLASGQAAETFAILNLA-----GAG---DHIVSSPRLYGGTYNLFHY 127 (436)
T ss_pred CchHHHHH----HHHHHHhCCCeE--------EEEccHHHHHHHHHHHHh-----CCC---CEEEEeCCcchHHHHHHHH
Confidence 34444444 468899988642 788899999999998775 367 899999988877543
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.+..+|++++.++ +. .|+++++++++++|++|++.+++||+|.+.|+++|+++|+++|++++||++++....
T Consensus 128 ~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~---- 199 (436)
T PRK07812 128 TLPKLGIEVSFVE-DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL---- 199 (436)
T ss_pred HhhcCeEEEEEEC-CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc----
Confidence 3445788888886 32 289999999999999999999999999999999999999999999999999764322
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc--ccchh--c--ccccCC-------C-cc-----
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR--KHQFV--A--VTEWSG-------G-LY----- 380 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~--~~~~~--~--~~~~~g-------~-~~----- 380 (438)
.+....|+|+++.|+|||+ ++.| +|.+++.+.... ...+. . .+.|.. . .+
T Consensus 200 --------~~pl~~GaDivv~S~tK~l-gg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (436)
T PRK07812 200 --------IRPLEHGADIVVHSATKYL-GGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKAR 270 (436)
T ss_pred --------CCchhcCCCEEEEeccccc-CCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHH
Confidence 1223468999999999995 5555 455555433211 00000 0 001100 0 00
Q ss_pred -CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 381 -VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 381 -~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
......|.+.... .+|..+ .|.+.+..+.++..++|..+++.|+++|+++-+.|
T Consensus 271 ~~~~~~~G~~l~p~--~a~l~~--rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~y 325 (436)
T PRK07812 271 VQLLRDLGSAISPF--NAFLIA--QGLETLSLRIERHVANAQRVAEFLEARDEVASVNY 325 (436)
T ss_pred HHHHHhcCCCCCHH--HHHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 0000112233322 555554 57788999999999999999999999999876554
No 117
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.80 E-value=1.2e-17 Score=170.53 Aligned_cols=242 Identities=12% Similarity=0.148 Sum_probs=169.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
|....+..++++.+.+++.+..|. ++++ + ++|+|+++|+.+++.++. .+| |+|+++.+.|+.+.
T Consensus 90 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~----v--~it~G~~~al~l~~~~l~-----~~G---d~Vlv~~P~y~~y~ 155 (430)
T PLN00145 90 YSTCVGLLPARRAIAEYLSRDLPYELSTDD----I--YLTAGCAQAIEIIMSVLA-----QPG---ANILLPRPGYPLYE 155 (430)
T ss_pred CCCCccCHHHHHHHHHHHhhccCCCCChhh----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCCccHH
Confidence 444556777777777777665554 3444 6 899999999999999875 377 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
..+...|++++.+++.+ ++.+|+++++++++++|+++++++|+||||.+.| +++|.++|+++|+++++|++|+.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~ 235 (430)
T PLN00145 156 ARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHL 235 (430)
T ss_pred HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhh
Confidence 99999999999998753 6889999999999999999999999999999988 788899999999999999999865
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccc-cccc-----chhcccccCCCccCCCCccCC
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNRE-IRKH-----QFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~-~~~~-----~~~~~~~~~g~~~~~~~~~gs 388 (438)
... .. .+ .|...+....-.++..+..|. +..+..+|+++..++. +... ....... . +.
T Consensus 236 ~~~--~~-~~-~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~----------~-~~ 300 (430)
T PLN00145 236 TFG--SK-PF-VPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLN----------I-ST 300 (430)
T ss_pred ccC--CC-Cc-cchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc----------c-cC
Confidence 431 10 00 111111111224666678899 4455669998875432 2111 0000000 0 00
Q ss_pred CCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 389 RPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 389 r~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+... .+.++...+ ..+.+++..+...+.++.+.+.|++++++..
T Consensus 301 ~~~~~--~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~ 348 (430)
T PLN00145 301 DPATF--VQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITC 348 (430)
T ss_pred CCCHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 01111 233333333 2355778888888999999999998888753
No 118
>PLN00175 aminotransferase family protein; Provisional
Probab=99.80 E-value=1.7e-17 Score=168.54 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=175.7
Q ss_pred HHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCC
Q 013675 149 NEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226 (438)
Q Consensus 149 ~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~ 226 (438)
.+.+...+..+..+|....+..++++.+.+++.+..|.+ +++ ++ ++|+|+++|+.+++.++. .+|
T Consensus 73 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~---~I--~vt~G~~~al~~~~~~l~-----~~g--- 139 (413)
T PLN00175 73 KEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK---EV--TVTSGCTEAIAATILGLI-----NPG--- 139 (413)
T ss_pred HHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CE--EEeCCHHHHHHHHHHHhC-----CCC---
Confidence 333333333333445566778888888888888887754 331 15 889999999999888765 377
Q ss_pred CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH 302 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~ 302 (438)
|+|+++.+.|+.+...++..|++++.+|+++ ++.+|++++++++++++++|++++|+||||.+.+ +++|+++|++|
T Consensus 140 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~ 219 (413)
T PLN00175 140 DEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN 219 (413)
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999975 6899999999999999999999999999999975 77899999999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccC
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 381 (438)
++++++|++|..+... .....+..++ ...+..++..++.|.+. .+..+|+++..+ ++........ .+.
T Consensus 220 ~~~ii~De~Y~~l~~~---~~~~s~~~~~-~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~-~l~~~l~~~~-~~~----- 288 (413)
T PLN00175 220 DVLAFTDEVYDKLAFE---GDHISMASLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAH-SFL----- 288 (413)
T ss_pred CcEEEEecccCccccC---CcccChhhCC-CCcCcEEEEecchhhccCcchheeeeEeCH-HHHHHHHHHH-hhc-----
Confidence 9999999999866431 0000010111 11233577788899954 445689877653 3332211111 000
Q ss_pred CCCccCCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 382 SPTVAGSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 382 ~~~~~gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
....+ ...++++...+ +...+++..++..+.++.+.+.|++. ++.
T Consensus 289 --~~~~s-----~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 335 (413)
T PLN00175 289 --TFATA-----TPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFK 335 (413)
T ss_pred --cCCCC-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 00001 11233333333 34556777888888999999999876 443
No 119
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.80 E-value=1.3e-18 Score=172.47 Aligned_cols=236 Identities=16% Similarity=0.086 Sum_probs=172.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCC-hHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSG-GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD 240 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~g-gt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~ 240 (438)
..++.+.++.+++++.++++++.+.+. ++ ++++| ||+|+..++..+.. +| +++++.....++ +.
T Consensus 30 hr~~~f~~~~~~~~~~l~~l~~~~~~~---~v--~~~~gsgT~a~ea~~~nl~~-----~~---~~~l~i~~G~fg~r~~ 96 (349)
T TIGR01364 30 HRSKEFEAVANEAESDLRELLNIPDNY---EV--LFLQGGATGQFAAVPLNLLA-----EG---KVADYIVTGAWSKKAA 96 (349)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCCc---eE--EEEcCCchHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHH
Confidence 345667789999999999999985432 14 56655 99999999998753 44 555554444333 67
Q ss_pred HHHhhcCcEEEEeeCCCC----CccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 241 KAAQYFNIKLWRVPVDKE----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~----~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+.++.+|+ ++.++.++. -.+|+++++ +++++++|.++|..|.||+..| ++++.++++++||++++.+.
T Consensus 97 ~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~ 168 (349)
T TIGR01364 97 KEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILS 168 (349)
T ss_pred HHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccC
Confidence 88999999 877776532 245666555 4568999999999999999876 77778899999999975443
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc--cCCCCccCCCCCchH
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL--YVSPTVAGSRPGGLI 394 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~--~~~~~~~gsr~~~~i 394 (438)
. ++|... .|++++++||+ ++|+|.|+++++++.+.+.... .+.+.... .......|+.+-..+
T Consensus 169 ~-----------~id~~~--~d~~~~ssqK~-lgP~Glg~l~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Tp~~~~i 233 (349)
T TIGR01364 169 R-----------PIDVSK--FGLIYAGAQKN-IGPAGLTVVIVRKDLLGRASRI-TPSMLNYKIHAENDSMYNTPPTFAI 233 (349)
T ss_pred c-----------cCCHHH--ccEEEEecccc-cCCCceEEEEECHHHHhhcccC-CCCcchHHHHHhcCCCCCCCcHHHH
Confidence 3 355543 56999999998 5799999999987654332111 11110000 001233467777789
Q ss_pred HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+++.++++++-.+ |++++.++..++++++++.|+++||+..
T Consensus 234 ~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~ 275 (349)
T TIGR01364 234 YVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYR 275 (349)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 9999999999888 7999999999999999999999987643
No 120
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.80 E-value=3.2e-18 Score=172.92 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=160.4
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD---- 240 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~---- 240 (438)
..|...++|+ .+++++|.+. + ++++||+.|+..++.+.. .+| ++|+++.+.|.+..
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~~------~--l~~~sG~~Ai~~al~~ll-----~~G---d~Vl~~~~~y~~~~~~~~ 121 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGEA------A--VVAASGMGAISSSLWSAL-----KAG---DHVVASDTLYGCTFALLN 121 (400)
T ss_pred CCccHHHHHH----HHHHHhCCCc------E--EEEcCHHHHHHHHHHHHh-----CCC---CEEEEecCccchHHHHHH
Confidence 3466666665 5888888642 2 789999999998887765 377 89999999887644
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhh
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLP 318 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~p 318 (438)
..++..|++++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++ |+++++|++|+.+...
T Consensus 122 ~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~ 196 (400)
T PRK06234 122 HGLTRYGVEVTFVDTS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ 196 (400)
T ss_pred HHHhhCCeEEEEECCC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence 4457789999999864 89999999999999999999999999999999999999997 9999999998754321
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhc-ccccCCCccCCCCccCCCCCchHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVA-VTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
. +. ..++|+++.|.+|++.++.. .|+++.++ ++.+..... ..++. |..... .
T Consensus 197 --------~-~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~~----------g~~l~p--~ 251 (400)
T PRK06234 197 --------R-PL---QLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDMT----------GSVIGP--F 251 (400)
T ss_pred --------C-ch---hhCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHhc----------CCCCCH--H
Confidence 1 22 23789999999999654432 57766654 332221100 01111 111121 1
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
.+|..+ .|.+.+..+.++..++++++.+.|++.|.+.-+.
T Consensus 252 ~a~l~~--~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~ 291 (400)
T PRK06234 252 EAFLII--RGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVY 291 (400)
T ss_pred HHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 445554 3445667888888999999999999988775443
No 121
>PLN02368 alanine transaminase
Probab=99.80 E-value=1.7e-17 Score=167.66 Aligned_cols=245 Identities=11% Similarity=0.096 Sum_probs=171.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..+|....+..++.+.+.+++.+..|. ++++ | ++|+|+++++.+++.++.. .+| |+|+++.+.|+
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~~~~~l~~----~pG---d~Vli~~P~Y~ 166 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPEL----I--FLTDGASKGVMQILNAVIR----GEK---DGVLVPVPQYP 166 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcccHHHHHHHHHHHHcC----CCC---CEEEEeCCCCc
Confidence 345656667778888888888887775 4444 6 8999999999999988751 267 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
.+...++..|.+++.+|+++ ++.+|++++++++++ +|+++++++|+||||.+.+ +++|.++|++||+++
T Consensus 167 ~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~I 246 (407)
T PLN02368 167 LYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVL 246 (407)
T ss_pred cHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999975 578999999999974 6899999999999999976 667888899999999
Q ss_pred EEeccccchhhhhhhhcCCCCC------CCcc--CCCCccEEEeCCCCCCC--CCCCcEEEEE--ecccccccchhcc-c
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIP------PFDF--SVQGVTSISVDVHKYGL--APKGTSVVLY--RNREIRKHQFVAV-T 373 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p------~~~~--~~~gvdsis~s~hK~~~--~p~g~g~l~~--r~~~~~~~~~~~~-~ 373 (438)
++|++|+.+... ....+ .+ .++. ...+-.++..++.|..+ .+..+|+++. .++++.+...... .
T Consensus 247 I~DE~Y~~l~y~--~~~~~-~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~ 323 (407)
T PLN02368 247 LGDEVYQQNIYQ--DERPF-ISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASI 323 (407)
T ss_pred EEEccccccccC--CCCCc-ccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcc
Confidence 999999876531 00000 00 0000 00112456668899843 5667999875 3444433221111 1
Q ss_pred ccCCCccCCCCccCCCCCchHHHHHHHHHHHcH------------HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ------------EGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~------------~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.|. .. ..+++++...+.. +..++..+...+.++.+.+.|+++||+.+
T Consensus 324 ~~~-------------~~--~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~ 382 (407)
T PLN02368 324 ALS-------------PN--VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC 382 (407)
T ss_pred cCC-------------CC--cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEe
Confidence 111 11 1144444444421 11234567778889999999999988754
No 122
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.80 E-value=1.1e-17 Score=168.42 Aligned_cols=227 Identities=17% Similarity=0.077 Sum_probs=158.7
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++++|.+.. ++++|||+|+.+++.++.- ++| ++|+++.++|.++..++...|++++.++
T Consensus 33 ~le~~la~~~g~~~~--------v~~~sgt~al~~~l~al~~----~~G---d~Viv~~~~~~~~~~~~~~~G~~~~~~~ 97 (380)
T TIGR03588 33 AFEEALAEYVGAKYA--------VAFNSATSALHIACLALGV----GPG---DRVWTTPITFVATANCALYCGAKVDFVD 97 (380)
T ss_pred HHHHHHHHHHCCCeE--------EEEcCHHHHHHHHHHHcCC----CCC---CEEEeCCcchHHHHHHHHHcCCEEEEEe
Confidence 345568888888532 5677899999999988621 367 8999999999999999999999999999
Q ss_pred CCC-CCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 255 VDK-EFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 255 ~~~-~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+++ ++.+|+++++++++ ++|++|+.++ ++|...|+++|.++|+++|+++++|++++.+..
T Consensus 98 ~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~------------ 162 (380)
T TIGR03588 98 IDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAE------------ 162 (380)
T ss_pred cCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCc------------
Confidence 975 78899999999998 7899888765 479999999999999999999999999864322
Q ss_pred CccCCCCc----cEEEeCCC--CCCCCCCCcEEEEEecccccccchhc-ccccCCCc-----------cCCCCccCCCCC
Q 013675 330 FDFSVQGV----TSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVA-VTEWSGGL-----------YVSPTVAGSRPG 391 (438)
Q Consensus 330 ~~~~~~gv----dsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~-~~~~~g~~-----------~~~~~~~gsr~~ 391 (438)
++....|. |+.++|+| |++.+|. .|+++++++++.+..... ...+.... +......|....
T Consensus 163 ~~~~~~g~~~~~d~~~~S~~~~K~~~~~~-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~ 241 (380)
T TIGR03588 163 YGGKPVGNCRYADATVFSFHPVKIITTAE-GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYR 241 (380)
T ss_pred cCCEeCCCccccceEEEecCCCCcccccC-ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccC
Confidence 12222233 99999988 8876654 466777776654432111 00010000 000001111111
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+..+-+++.....+.+++..++..++++++.+.|+++|+++
T Consensus 242 --m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 242 --MTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 11122222222235678999999999999999999988765
No 123
>PRK07337 aminotransferase; Validated
Probab=99.79 E-value=1.3e-17 Score=168.25 Aligned_cols=245 Identities=15% Similarity=0.118 Sum_probs=168.1
Q ss_pred HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227 (438)
Q Consensus 150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~ 227 (438)
+.+...+..+...|...++..++++.+.+++.+.+|. ++++ + ++|+|+++|+.+++.++. .+| |
T Consensus 50 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d 115 (388)
T PRK07337 50 EAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPER----I--VVTAGASAALLLACLALV-----ERG---D 115 (388)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHh----E--EEecCcHHHHHHHHHHhc-----CCC---C
Confidence 3333333333344555566778888888888877775 4444 6 899999999999888875 367 8
Q ss_pred eEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH 302 (438)
Q Consensus 228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~ 302 (438)
+|+++.++|+.+...++..|.+++.+|+++ ++.+|++++++.+++++++|++++|+||||.+.+ +++|+++|+++
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~ 195 (388)
T PRK07337 116 EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR 195 (388)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999974 5789999999999999999999999999999876 67888999999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccE-EEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCcc
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTS-ISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvds-is~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~ 380 (438)
++++++|.+|..+.. +. ...+... .+.+. +..+.+|.+. ....+|+++..++ +..........+...
T Consensus 196 ~~~ii~De~y~~~~~---~~--~~~~~~~---~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~-- 264 (388)
T PRK07337 196 GGFTIVDEIYQGLSY---DA--APVSALS---LGDDVITINSFSKYFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFIC-- 264 (388)
T ss_pred CCEEEEecccccccc---CC--CCcChhh---ccCCEEEEEechhhcCCchhheeeeecCHH-HHHHHHHHHHHhccC--
Confidence 999999999976542 10 0011111 12234 4558899842 3344899877543 332211111111100
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHc---HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 381 VSPTVAGSRPGGLIAGAWAALMSLG---QEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 381 ~~~~~~gsr~~~~ia~~~aal~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.. ..+..+++..+. .+.+++..++..+.++++.+.|+++
T Consensus 265 ---------~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 306 (388)
T PRK07337 265 ---------AS--ALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL 306 (388)
T ss_pred ---------CC--hHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 113333333332 2346666777778888888888875
No 124
>PRK08912 hypothetical protein; Provisional
Probab=99.79 E-value=2e-17 Score=166.91 Aligned_cols=242 Identities=17% Similarity=0.135 Sum_probs=168.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|....+..++.+.+.+++.+.+|.+ ++ + + ++|+|+++++.+++.+.. .+| ++|+++.++|+
T Consensus 57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~----i--~~t~G~~~al~~~~~~~~-----~~g---d~Vlv~~p~y~ 122 (387)
T PRK08912 57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETE----V--MVTSGATEALAAALLALV-----EPG---DEVVLFQPLYD 122 (387)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCccc----E--EEeCCcHHHHHHHHHHhc-----CCC---CEEEEeCCCch
Confidence 345455667788888888888777753 43 3 6 899999999988888765 367 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
.+...++.+|++++.+|+++ ++.+|++++++.++++++++++++|+||||.+.+ +++|.++|++|++++++|.+|+
T Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~ 202 (387)
T PRK08912 123 AYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE 202 (387)
T ss_pred hhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 99999999999999999975 7889999999999989999999999999999977 6779999999999999999997
Q ss_pred chhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675 314 GFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~ 390 (438)
.+... ...+ .+-... ...+.+++..+.+|. ++.+| +|+++... ++..........+. . +-+
T Consensus 203 ~~~~~---~~~~-~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~l~~~~~~~~--------~--~~~ 266 (387)
T PRK08912 203 HVVFD---GRRH-IPLMTLPGMRERTVKIGSAGKI-FSLTGWKVGFVCAAP-PLLRVLAKAHQFLT--------F--TTP 266 (387)
T ss_pred hcccC---CCCC-cChhhCCCccCceEEEeechhh-ccCcCceeEEEecCH-HHHHHHHHHHhhcc--------c--cCC
Confidence 65431 1010 110111 112347888999998 55445 89987654 33322111110000 0 001
Q ss_pred CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....++..++. -..+.+++..++..+.++++.+.|++. |++
T Consensus 267 ~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 308 (387)
T PRK08912 267 PNLQAAVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRI-GFP 308 (387)
T ss_pred hHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 101112222221 123445677777888889999999876 443
No 125
>PLN02656 tyrosine transaminase
Probab=99.79 E-value=1.6e-17 Score=168.75 Aligned_cols=254 Identities=16% Similarity=0.142 Sum_probs=174.4
Q ss_pred HHHHHHHHhhccC-CCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675 147 LINEACSMFAHTN-PLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (438)
Q Consensus 147 ~~~~~~~~~~~~n-~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G 223 (438)
.+.+++...+..+ ...|...++..++++.+.+++.+..|. ++++ + ++|+|+++++.+++.++. .+|
T Consensus 52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g 120 (409)
T PLN02656 52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDD----V--FITSGCTQAIDVALSMLA-----RPG 120 (409)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCccc----E--EEeCChHHHHHHHHHHHh-----CCC
Confidence 3344443333333 234545567777888888887776654 4444 6 899999999999998875 377
Q ss_pred CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHH
Q 013675 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGEL 298 (438)
Q Consensus 224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~l 298 (438)
|+|+++.++|+.+...+...|++++.+|+++ ++.+|+++++++++++++++++++|+||||.+. ++++|.++
T Consensus 121 ---d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~ 197 (409)
T PLN02656 121 ---ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAET 197 (409)
T ss_pred ---CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999863 578999999999999999999999999999994 58899999
Q ss_pred HHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCC-CCCCCCcEEEEEecc-------cccccch
Q 013675 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNR-------EIRKHQF 369 (438)
Q Consensus 299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~-------~~~~~~~ 369 (438)
|+++|+++++|++|+.+... +...+++ .+....-.++..|+.|. +..+..+|+++..++ ++.....
T Consensus 198 a~~~~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~ 272 (409)
T PLN02656 198 AEKLKILVIADEVYGHLAFG-----SNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIK 272 (409)
T ss_pred HHHcCCEEEEehhhhhcccC-----CCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHH
Confidence 99999999999999866531 1000111 11111124667788998 556677999887532 2222111
Q ss_pred hcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
.....+ +.-+ ...+.++...+ ....+++..++..+.++.+.+.|++++++
T Consensus 273 ~~~~~~-----------~~~s---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~ 325 (409)
T PLN02656 273 KYFDIL-----------GGPA---TFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCI 325 (409)
T ss_pred HHHhhh-----------cCCC---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 100000 0001 11333333333 23457777788888888999999887653
No 126
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.79 E-value=3.4e-18 Score=169.74 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.+++++|+++++ + ++|+|+++++..+++++. .+| ++|+++.+.|+.+...++..|++++.+
T Consensus 57 ~~lr~~ia~~~~~~~~~----i--~~~~G~~~~l~~~~~~l~-----~~g---d~v~~~~p~y~~~~~~~~~~g~~~~~~ 122 (346)
T TIGR01141 57 AELKQALADYYGVDPEQ----I--LLGNGSDEIIELLIRAFL-----EPG---DAVLVPPPTYSMYEISAKIHGAEVVKV 122 (346)
T ss_pred HHHHHHHHHHhCcChHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCCHHHHHHHHHHcCCeEEEe
Confidence 35667788999987765 6 899999999988887764 266 899999999988888999999999999
Q ss_pred eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
|+++++.+|+++++++++++|++|++++|+||||.+.|++++.++|+.+ ++++++|++|+.+... +...+..+
T Consensus 123 ~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~-----~~~~~~~~ 197 (346)
T TIGR01141 123 PLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGE-----PSTLPLLA 197 (346)
T ss_pred ccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCC-----ccHHHHHh
Confidence 9988888999999999988999999999999999999999999999887 9999999998744321 00000011
Q ss_pred cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675 332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY 409 (438)
Q Consensus 332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~ 409 (438)
....+++..+.+|++. .+.++|+++.+ +++.+........|.. + ..++.++...+.. ..+
T Consensus 198 --~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~l~~~~~~ 259 (346)
T TIGR01141 198 --EYPNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAPFNL----------S-----RLAQAAAIAALRDDDFI 259 (346)
T ss_pred --hCCCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhccCCCCC----------C-----HHHHHHHHHHhCCHHHH
Confidence 1123566778899952 23448987764 4433321111111110 0 1133333333322 247
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 410 LENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
++..++..++++++.+.|+++||+++
T Consensus 260 ~~~~~~~~~~~~~l~~~L~~~~g~~~ 285 (346)
T TIGR01141 260 EKTVEEINAERERLYDGLKKLPGLEV 285 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 77888889999999999998877653
No 127
>PRK05939 hypothetical protein; Provisional
Probab=99.79 E-value=1.2e-17 Score=168.34 Aligned_cols=233 Identities=13% Similarity=0.086 Sum_probs=162.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc---HHH
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA---YDK 241 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s---~~~ 241 (438)
..|....+|+ .++++.|.... +.+++|+.|+..++.++. ++| |+|+++...|++ +..
T Consensus 45 g~p~~~~lE~----~la~leg~~~~--------v~~ssG~~Ai~~~l~all-----~~G---d~Vv~~~~~y~~t~~~~~ 104 (397)
T PRK05939 45 GTPTTAALEA----KITKMEGGVGT--------VCFATGMAAIAAVFLTLL-----RAG---DHLVSSQFLFGNTNSLFG 104 (397)
T ss_pred CCHHHHHHHH----HHHHHhCCCeE--------EEeCCHHHHHHHHHHHHc-----CCC---CEEEECCCccccHHHHHH
Confidence 4566666666 58888887642 567778999999988764 377 899999988765 344
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.+..+|++++.+++. |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++...
T Consensus 105 ~l~~~G~~v~~v~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~----- 174 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW----- 174 (397)
T ss_pred HHHhcCCEEEEECCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-----
Confidence 567789999999864 8999999999999999999999999999999999999999999999999986432
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccch----hcccccCCCcc----CC---CCccCCC
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQF----VAVTEWSGGLY----VS---PTVAGSR 389 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~----~~~~~~~g~~~----~~---~~~~gsr 389 (438)
.++....|+|++..+.|||+.++.+ .|.++..+.......+ ....++....+ .. ....|..
T Consensus 175 -------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 247 (397)
T PRK05939 175 -------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGAT 247 (397)
T ss_pred -------ccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCC
Confidence 2344456899999999999655322 3444443222110000 00000000000 00 0011222
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
... ..+|..+ .|.+.+..+.++..+++..+++.|++.|.++-+.|
T Consensus 248 ~~p--~~a~l~~--rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~y 292 (397)
T PRK05939 248 LSS--EAAHRIA--IGAETLALRVDRSCSNALALAQFLEAHPKVARVYY 292 (397)
T ss_pred CCH--HHHHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 222 2455554 57788899999999999999999999998765444
No 128
>PRK08363 alanine aminotransferase; Validated
Probab=99.79 E-value=1.5e-17 Score=168.43 Aligned_cols=246 Identities=16% Similarity=0.155 Sum_probs=167.7
Q ss_pred cccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
|...++..++++.+.+++...+| .++++ + ++|+|+++++.+++.++. .+| ++|+++.++|+.+.
T Consensus 66 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d~Vl~~~p~y~~~~ 131 (398)
T PRK08363 66 YGPSEGLPELREAIVKREKRKNGVDITPDD----V--RVTAAVTEALQLIFGALL-----DPG---DEILIPGPSYPPYT 131 (398)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHhC-----CCC---CEEEEcCCCCcchH
Confidence 33456677788877777776656 44544 6 899999999999998875 377 89999999999999
Q ss_pred HHHhhcCcEEEEe-eCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRV-PVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v-~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
..++.+|.+++.+ +.++ ++.+|+++++++++++++++++++|+||||.+.+ +++|.++|+++|+++++|++|+.+
T Consensus 132 ~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~ 211 (398)
T PRK08363 132 GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM 211 (398)
T ss_pred HHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh
Confidence 9999999998888 5554 5679999999999989999999999999999977 889999999999999999999865
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCC-CCCCCCcEEEEEe-cccccccchhcccccCCCccCCCCccCCCCCch
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKY-GLAPKGTSVVLYR-NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ 393 (438)
... +...+........-.++..+++|. +..+.++|+++.+ ++++..........+... ....+.+ .
T Consensus 212 ~~~-----~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~s~~--~ 279 (398)
T PRK08363 212 TYE-----GKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARI-----RLCPNTP--A 279 (398)
T ss_pred ccC-----CcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcc-----cccCChH--H
Confidence 321 100000111111113556789999 5566789998873 332221100000000000 0000111 1
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..++..++.. ..+.+++..++..+..+++.+.|+++|++++
T Consensus 280 q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (398)
T PRK08363 280 QFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIST 320 (398)
T ss_pred HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence 1122233321 3466777788888899999999988877653
No 129
>PRK08960 hypothetical protein; Provisional
Probab=99.79 E-value=3.1e-17 Score=165.47 Aligned_cols=248 Identities=14% Similarity=0.119 Sum_probs=166.4
Q ss_pred HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227 (438)
Q Consensus 150 ~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~ 227 (438)
+++......+...|...++..++.+.+.+++.+.+|. ++++ + ++|+|+++++.+++.++. .+| +
T Consensus 52 ~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d 117 (387)
T PRK08960 52 AAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPER----I--LVTPGGSGALLLASSLLV-----DPG---K 117 (387)
T ss_pred HHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EEccCcHHHHHHHHHHhc-----CCC---C
Confidence 3333333333344555667777888888888776664 4444 6 899999999999998875 377 8
Q ss_pred eEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH 302 (438)
Q Consensus 228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~ 302 (438)
+|+++.++|+.+...++..|.+++.+|+++ ++.+|+++++++++++++++++++|+||||.+.+ +++|+++|+++
T Consensus 118 ~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~ 197 (387)
T PRK08960 118 HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRAR 197 (387)
T ss_pred EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999975 4679999999999999999999999999999987 55777789999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCcc
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLY 380 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~ 380 (438)
|+++++|++|..+... .. . .+... ...-.++..|.+|. ++.+| +|+++..+ ++.+........+..
T Consensus 198 ~~~li~De~Y~~~~~~--~~--~-~~~~~--~~~~vi~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~~--- 265 (387)
T PRK08960 198 GGHLVVDEIYHGLTYG--VD--A-ASVLE--VDDDAFVLNSFSKY-FGMTGWRLGWLVAPP-AAVPELEKLAQNLYI--- 265 (387)
T ss_pred CCEEEEEccccccccC--CC--C-CChhh--ccCCEEEEeecccc-cCCcccEEEEEEcCH-HHHHHHHHHHhhhcc---
Confidence 9999999999765321 00 0 11111 11124667789998 44444 99987754 333221111111100
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+... ..++.+++..-..+.+.+..+...+..+.+.+.|+++
T Consensus 266 -----~~s~~~--q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 308 (387)
T PRK08960 266 -----SASTPA--QHAALACFEPETLAILEARRAEFARRRDFLLPALREL 308 (387)
T ss_pred -----CCCHHH--HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111 1122222321112445566667777788888888875
No 130
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.79 E-value=1e-17 Score=170.42 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=160.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~Gi~v 250 (438)
++.+.++++.|.+.. +++++|++|+.+++.++. ++| ++|+++...|.+.. ..+..+|+++
T Consensus 67 ~le~~lA~l~g~~~a--------l~~~SG~~Ai~~al~all-----~pG---d~VIv~~~~y~~t~~~~~~~~~~~G~~v 130 (427)
T PRK05994 67 VLEERVAALEGGTAA--------LAVASGHAAQFLVFHTLL-----QPG---DEFIAARKLYGGSINQFGHAFKSFGWQV 130 (427)
T ss_pred HHHHHHHHHhCCCcE--------EEEcCHHHHHHHHHHHHh-----CCC---CEEEEecCcchhHHHHHHHHHHhcCcEE
Confidence 444568899988642 789999999999998875 377 89999999988643 4467789999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++.+ |+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.... .
T Consensus 131 ~~vd~~-----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~------------~ 193 (427)
T PRK05994 131 RWADAD-----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL------------I 193 (427)
T ss_pred EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc------------C
Confidence 998864 89999999999999999999999999999999999999999999999999864322 1
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccc--ccc-cc--hhcc-cccCCCccCC----------------CCccC
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNRE--IRK-HQ--FVAV-TEWSGGLYVS----------------PTVAG 387 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~--~~~-~~--~~~~-~~~~g~~~~~----------------~~~~g 387 (438)
+....|+|+++.|.|||+.++.+ .|.+++.... +.. .. +... ....++.... ....|
T Consensus 194 ~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 273 (427)
T PRK05994 194 RPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLG 273 (427)
T ss_pred CccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcC
Confidence 12246899999999999655543 4544543221 100 00 0000 0000110000 00112
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
...... .+|..+ .|.+.+..+.++..+++.++.+.|+++|+++-+.|
T Consensus 274 ~~~~~~--~A~l~~--~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~y 320 (427)
T PRK05994 274 PAISPF--NAFLIL--TGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNY 320 (427)
T ss_pred CCCCHH--HHHHHH--cCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 221111 344443 56688899999999999999999999999876554
No 131
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.79 E-value=1.3e-17 Score=168.56 Aligned_cols=229 Identities=16% Similarity=0.124 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (438)
Q Consensus 168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G 247 (438)
+...+..++++.+++++|.+. + ++++||++|+..++.++. ++| |+|+++.+.|+++...++..+
T Consensus 80 G~~~~~~~le~~ia~~~g~~~------~--ii~~~~~~a~~~~~~~l~-----~~g---d~vi~~~~~~~s~~~~~~~~~ 143 (393)
T TIGR01822 80 GTQDIHKELEAKIAAFLGTED------T--ILYASCFDANGGLFETLL-----GAE---DAIISDALNHASIIDGVRLCK 143 (393)
T ss_pred CChHHHHHHHHHHHHHhCCCc------E--EEECchHHHHHHHHHHhC-----CCC---CEEEEeccccHHHHHHHHhcC
Confidence 445556677788999999852 2 677899999998887764 377 999999999999999988888
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
.+.+.++ .+|++++++++++ +|++|+..+++|++|.+.|+++|+++|++||+++++|++|+.+..+
T Consensus 144 ~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~--- 215 (393)
T TIGR01822 144 AKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLG--- 215 (393)
T ss_pred CceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcC---
Confidence 7765443 3789999999875 7889999999999999999999999999999999999998533321
Q ss_pred hcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675 322 KLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (438)
Q Consensus 322 ~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa 400 (438)
..|.. .+..+. ..++|+++.++||++.++ ..|+++.+ +++..........+ ...++.+...+++..++
T Consensus 216 ~~~~~~~~~~~~-~~~~di~~~s~sK~l~g~-r~G~~~~~-~~~~~~l~~~~~~~--------~~~~~~~~~~~~a~~~a 284 (393)
T TIGR01822 216 PTGRGSHELCGV-MGRVDIITGTLGKALGGA-SGGFTTAR-KEVVELLRQRSRPY--------LFSNSLPPAVVGASIKV 284 (393)
T ss_pred CCCCchHHhcCC-CCCCeEEEEEChHHhhCC-CcEEEEeC-HHHHHHHHHhCccc--------eecCCCCHHHHHHHHHH
Confidence 01100 001121 236899999999995444 56886654 44333211110000 11122222333445556
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
++.+ ++.++..++..++++++.+.|++. |++
T Consensus 285 l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 315 (393)
T TIGR01822 285 LEML--EASNELRDRLWANTRYFRERMEAA-GFD 315 (393)
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 5543 345677788889999999999875 544
No 132
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.79 E-value=3.2e-17 Score=163.17 Aligned_cols=243 Identities=16% Similarity=0.103 Sum_probs=164.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|...++..++++.+.+++.+..|.+ ++ + + ++|+|+++++..++.++.+ +|-+.++|+++.++|+
T Consensus 30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--iit~Gs~~ai~~~~~~~~~-----~g~~~d~Vl~~~p~y~ 98 (350)
T TIGR03537 30 SQYPSALGTKALREAISGWFERRFGVKLDPDAQ----V--LPSAGSKEAIFHFPLVFID-----PEEDRRRVIFGTPGYP 98 (350)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEcCChHHHHHHHHHHHcC-----CCCCCceEEEcCCCCc
Confidence 334445567788888888888877753 43 3 6 8999999999998887753 4422369999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~ 312 (438)
.+..+++.+|++++.+|+++ ++.+|+++++++++++++++++++|+||||.+.| +++|+++|+++|+++++|++|
T Consensus 99 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 99 VYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred chHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 99999999999999999973 5679999999999999999999999999999988 889999999999999999999
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
+.+... . ..+.+......-.++..+++|.. .....+|+++. ++++..........+.. +.+.
T Consensus 179 ~~~~~~---~---~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~----------~~~~ 241 (350)
T TIGR03537 179 TEIYFG---E---PPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKLRANFGV----------ASPD 241 (350)
T ss_pred cccccC---C---CCCchhhcCcCCEEEEeecccccCCccccceeeec-CHHHHHHHHHHHHhhcc----------CCCH
Confidence 754321 1 01011100112246666899983 23344888754 44433322111111110 0111
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
....++..++. ..+..++..++..++.+.+.+.|++. |++
T Consensus 242 ~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~ 281 (350)
T TIGR03537 242 FVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKV-GLE 281 (350)
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 11112222221 23455666777788888888888775 443
No 133
>PRK07682 hypothetical protein; Validated
Probab=99.79 E-value=1.8e-17 Score=166.65 Aligned_cols=242 Identities=12% Similarity=0.118 Sum_probs=170.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
.+|...++..++.+.+.+++.+.+|.+ +++ ++ ++|+|+++|+.++++++.+ +| ++|+++.++|+.
T Consensus 51 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i--~~t~G~~~al~~~~~~l~~-----~g---d~vl~~~p~y~~ 117 (378)
T PRK07682 51 TSYTANAGLLELRQEIAKYLKKRFAVSYDPND---EI--IVTVGASQALDVAMRAIIN-----PG---DEVLIVEPSFVS 117 (378)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cE--EEeCChHHHHHHHHHHhCC-----CC---CEEEEeCCCchh
Confidence 335446778888888889988877764 321 26 8999999999999888753 67 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
+...++..|.+++.++++. ++.+|+++++++++++++++++++|+||||.+.+ +++|.++|++|++++++|++|+
T Consensus 118 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~ 197 (378)
T PRK07682 118 YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYA 197 (378)
T ss_pred hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhh
Confidence 9999999999999999863 6789999999999989999999999999999865 7899999999999999999998
Q ss_pred chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
.+... .. ...+..+. ....-.++..++.|.+. .+..+|+++.++ ++.+...... .+... +-+
T Consensus 198 ~~~~~--~~-~~~~~~~~-~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~-~~i~~l~~~~-~~~~~---------~~~-- 260 (378)
T PRK07682 198 ELTYD--EA-YTSFASIK-GMRERTILISGFSKGFAMTGWRLGFIAAPV-YFSEAMLKIH-QYSMM---------CAP-- 260 (378)
T ss_pred hcccC--CC-CCChhhcc-cccCCEEEEecCcccccChhhhhhhhhcCH-HHHHHHHHHH-Hhhcc---------CCC--
Confidence 76531 00 00011111 11123577888899943 233489987654 3333211111 01000 001
Q ss_pred hHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 393 LIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 393 ~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..++.++...+ |...+++..++..+.++++.+.|+++ +++
T Consensus 261 -~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 302 (378)
T PRK07682 261 -TMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLT 302 (378)
T ss_pred -HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 11333333333 34556777788888999999999876 543
No 134
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.79 E-value=7.2e-18 Score=169.08 Aligned_cols=214 Identities=17% Similarity=0.134 Sum_probs=155.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~v 250 (438)
++.+.++++.|.+.. +++++|+.|+.+++. +. ++| ++|+++.+.|.+. ...+...|+++
T Consensus 54 ~Le~~la~l~g~~~a--------l~~~SG~~Al~~~l~-~l-----~pG---d~Vi~~~~~y~~t~~~~~~~~~~~gi~v 116 (380)
T PRK06176 54 ALEELIADLEGGVKG--------FAFASGLAGIHAVFS-LF-----QSG---DHVLLGDDVYGGTFRLFDKVLVKNGLSC 116 (380)
T ss_pred HHHHHHHHHhCCCCE--------EEECCHHHHHHHHHH-Hc-----CCC---CEEEEcCCChhHHHHHHHHHHHhcCeEE
Confidence 344468999987542 677888888876553 32 377 8999999888754 34566779999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.... . . +.
T Consensus 117 ~~vd~~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~---~-----~-p~ 182 (380)
T PRK06176 117 TIIDTS-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY---Q-----N-PL 182 (380)
T ss_pred EEcCCC-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc---C-----C-cc
Confidence 988763 89999999999999999999999999999999999999999999999999874322 0 1 22
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
..|+|+++.|++||+.+|.. .|++..+++++..... ......|. -.+ ....|..+ .|.+.
T Consensus 183 ---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~-~~~~~~G~----------~~~--~~~~~l~~--~gl~t 244 (380)
T PRK06176 183 ---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA-FFQNAIGG----------VLG--PQDSWLLQ--RGIKT 244 (380)
T ss_pred ---ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH-HHHHHhcC----------CCC--HHHHHHHH--hccCc
Confidence 45899999999999766653 5666666655432211 11111111 011 12445554 45567
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
+..+.++..+++..+.+.|++.|.+.-+.
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~ 273 (380)
T PRK06176 245 LGLRMEAHQKNALCVAEFLEKHPKVEKVY 273 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence 78888888899999999999998876544
No 135
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.79 E-value=1.1e-17 Score=167.12 Aligned_cols=233 Identities=19% Similarity=0.121 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
.+.+.++|+ .+++++|.+. ++.+++||.|+.+++.++.- ++| ++|++|..++++...++..
T Consensus 24 g~~~~~fE~----~~a~~~g~~~--------~~~~~sgt~Al~~al~~l~~----~~g---deVi~p~~t~~~~~~ai~~ 84 (363)
T PF01041_consen 24 GPYVEEFEK----EFAEYFGVKY--------AVAVSSGTSALHLALRALGL----GPG---DEVIVPAYTFPATASAILW 84 (363)
T ss_dssp SHHHHHHHH----HHHHHHTSSE--------EEEESSHHHHHHHHHHHTTG----GTT---SEEEEESSS-THHHHHHHH
T ss_pred CHHHHHHHH----HHHHHhCCCe--------EEEeCChhHHHHHHHHhcCC----CcC---ceEecCCCcchHHHHHHHH
Confidence 566666776 4788888653 38999999999999999542 367 9999999999999999999
Q ss_pred cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
.|++++.+++++ ++.+|+++++++|+++|++|+++|. .|...|+++|.++|+++|++++.|+|++-+..
T Consensus 85 ~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~------- 154 (363)
T PF01041_consen 85 AGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGAR------- 154 (363)
T ss_dssp TT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-E-------
T ss_pred hccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCce-------
Confidence 999999999995 9999999999999999999999987 89999999999999999999999999753321
Q ss_pred CCCCCCccCCCCc--cEEEeCC--CCCCCCCCCcEEEEEecccccccchhccc-ccCCCcc--CCCCc-cCCCCCchHHH
Q 013675 325 YPIPPFDFSVQGV--TSISVDV--HKYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLY--VSPTV-AGSRPGGLIAG 396 (438)
Q Consensus 325 ~~~p~~~~~~~gv--dsis~s~--hK~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~--~~~~~-~gsr~~~~ia~ 396 (438)
++-+..|- |+.++|+ .|...++- .|+++++++++.++...... .+..... ..... .|..... ..
T Consensus 155 -----~~g~~~G~~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm--~~ 226 (363)
T PF01041_consen 155 -----YKGRPVGSFGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRM--SE 226 (363)
T ss_dssp -----ETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B---BH
T ss_pred -----eCCEeccCCCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccccc--HH
Confidence 12121221 5555555 58864444 48888888776544321111 1100000 00000 1211111 12
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+-+++.....+.+++..++..++++++.+.|.+++++..
T Consensus 227 ~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~ 265 (363)
T PF01041_consen 227 LQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKP 265 (363)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEE
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccc
Confidence 233333333467889999999999999999999988743
No 136
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.79 E-value=1.5e-17 Score=158.98 Aligned_cols=260 Identities=18% Similarity=0.141 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (438)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~ 225 (438)
..+.+++.......-+.|. -...++-+.+..|.++..++....+ ++ ++++|.--++.++++++.. +|
T Consensus 41 p~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e--~i--~~~p~VVpgi~~~I~~~T~-----~g-- 107 (388)
T COG1168 41 PEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPE--WI--VFVPGVVPGISLAIRALTK-----PG-- 107 (388)
T ss_pred HHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcc--eE--EEcCcchHhHHHHHHHhCc-----CC--
Confidence 3445666666665555554 2334578889999999998865431 24 8999999999999999884 88
Q ss_pred CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccC-cEEEEEecCCCCCccc---cCHHHHHHH
Q 013675 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRN-TVLIVGSAPGFPHGII---DPIQELGEL 298 (438)
Q Consensus 226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~-t~~vv~~~~~~~tG~i---ddi~~I~~l 298 (438)
|.|++..+.|+.|.++.+..|-++...|+-. .+.||.++||+++.+. ++++++|+|+||+|.+ +.+.+|++|
T Consensus 108 -d~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~el 186 (388)
T COG1168 108 -DGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAEL 186 (388)
T ss_pred -CeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHH
Confidence 9999999999999999999999999999863 4568999999998764 6999999999999988 668999999
Q ss_pred HHHcCCeEEEeccccchhhhhhhhcCC-CCCCC--ccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchh-ccc
Q 013675 299 ALSHGTCLHVDLCLGGFVLPFAKKLGY-PIPPF--DFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFV-AVT 373 (438)
Q Consensus 299 a~~~~i~lhVD~a~gg~~~pf~~~~g~-~~p~~--~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~-~~~ 373 (438)
|++||+.++.|+.+..+++. |+ .+|.. +.......+.+.++.|.++ ++..++.+++.+++++..-.. ...
T Consensus 187 c~kh~v~VISDEIHaDlv~~-----g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~ 261 (388)
T COG1168 187 CLRHGVRVISDEIHADLVLG-----GHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR 261 (388)
T ss_pred HHHcCCEEEeeccccccccc-----CCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence 99999999999999876652 21 12211 1122223566667799954 445688888988877543111 110
Q ss_pred ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 013675 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL-FPMFLP 435 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~ 435 (438)
.-.++ .+.-.+.+.-+|. ..|..++.+..+.+..+.+++.+.+.+ +|++++
T Consensus 262 ~~~~~----------~n~lg~~A~~aAY-~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v 313 (388)
T COG1168 262 NGLHG----------PSALGIIATEAAY-NQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV 313 (388)
T ss_pred hcCCC----------CchHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 10000 1111133444444 369999999999999999999999987 788876
No 137
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.79 E-value=1.7e-17 Score=173.40 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=164.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHh--CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALL--GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~--g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
+|....+..++.+.+.+++.+.. +.++++ | ++|+|+++++.+++.++.+ +| |+|+++.+.|+.+
T Consensus 180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~----I--~it~G~~eal~~~~~~l~~-----~G---d~Vli~~P~y~~y 245 (517)
T PRK13355 180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVDD----I--YTGNGVSELINLSMSALLD-----DG---DEVLIPSPDYPLW 245 (517)
T ss_pred CCCCCcChHHHHHHHHHHHHhcCCCCCChhH----E--EEeCcHHHHHHHHHHHhCC-----CC---CEEEEcCCCCcCH
Confidence 45556677777777777765543 345554 7 8999999999999988763 77 9999999999999
Q ss_pred HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
..+++..|.+++.+++++ ++.+|+++++++++++|++|++++|+||||.+.+ +++|.++|++||+++++|++|..
T Consensus 246 ~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~ 325 (517)
T PRK13355 246 TACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDR 325 (517)
T ss_pred HHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhh
Confidence 999999999999999875 5789999999999999999999999999999987 78899999999999999999976
Q ss_pred hhhhhhhhcCCCCCCCccCCCCccEE-EeCCCCC-CCCCCCcEEEEEe-ccccccc---chhcccccCCCccCCCCccCC
Q 013675 315 FVLPFAKKLGYPIPPFDFSVQGVTSI-SVDVHKY-GLAPKGTSVVLYR-NREIRKH---QFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~~~~~gvdsi-s~s~hK~-~~~p~g~g~l~~r-~~~~~~~---~~~~~~~~~g~~~~~~~~~gs 388 (438)
+... +...+++......+..+ ..++.|. +.++..+|+++.. ++++... ....... .
T Consensus 326 ~~~~-----~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~-------------~ 387 (517)
T PRK13355 326 LVMD-----GLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLAN-------------M 387 (517)
T ss_pred hcCC-----CCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhc-------------C
Confidence 5431 10001111111222233 3567898 3455669998764 3322111 0000000 0
Q ss_pred CCCchHHHHHHHHHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 389 RPGGLIAGAWAALMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+......+++++...+.. ..+.+..++..+.++++.+.|+++||+++
T Consensus 388 ~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 438 (517)
T PRK13355 388 RLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISA 438 (517)
T ss_pred cCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 000112244444444421 11222234455667889999988888754
No 138
>PRK06460 hypothetical protein; Provisional
Probab=99.79 E-value=1.3e-17 Score=167.26 Aligned_cols=215 Identities=13% Similarity=0.066 Sum_probs=153.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc----CcHHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH----SAYDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h----~s~~~a~~~~Gi~v 250 (438)
++++.++++.|.+.. +++++|++|+..++.++. ++| |+|+++.+.+ ..+...++..|+++
T Consensus 49 ~L~~~lA~l~g~~~~--------v~~~sG~~ai~~~l~al~-----~~G---d~Vl~~~~~~~~ty~~~~~~~~~~G~~v 112 (376)
T PRK06460 49 ELTKKIVELENAEMG--------VAFSSGMGAISTTALALL-----KPG---NSVLVHRDMFGRSYRFFTDYLKNWGVNV 112 (376)
T ss_pred HHHHHHHHHhCCCcE--------EEeCCHHHHHHHHHHHHh-----CCC---CEEEEecCCcCcHHHHHHHHHHhhCcEE
Confidence 444568999998642 456777899998888775 377 8999987654 34557788889999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.++.++ .+.+++.++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+.. .
T Consensus 113 ~~~~~~~-----~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~------------~ 175 (376)
T PRK06460 113 DASNPGS-----DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN------------Q 175 (376)
T ss_pred EEECCCC-----HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc------------C
Confidence 9888652 3456666678899999999999999999999999999999999999999864311 1
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
.....++|+++.+++|++.++.+ .|+++ .++++.+........| +. -.. ...+|.++ .|.+.
T Consensus 176 ~~l~~~~divv~S~sK~l~G~~~~~~G~~~-~~~~l~~~l~~~~~~~-g~----------~~~--~~~a~~~l--~~~~~ 239 (376)
T PRK06460 176 KPLELGADIVVHSASKFLAGHNDVIAGLAA-GYGKLLNVIDQMRRTL-GT----------SLD--PHAAYLTL--RGIKT 239 (376)
T ss_pred ChhhcCCCEEEeecceeccCCCCceEEEEe-cCHHHHHHHHHHHHhc-CC----------CCC--HHHHHHHH--hchhh
Confidence 11124689999999999543332 56654 4455443221111111 11 011 12556665 36688
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
++.+.+++.++++++.+.|++.|.++-+.|
T Consensus 240 l~~r~~~~~~n~~~l~~~L~~~p~v~~v~y 269 (376)
T PRK06460 240 LKIRMDVINRNAEQIAEFLEGHPKVVKVYY 269 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 899999999999999999999988765443
No 139
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.78 E-value=1.2e-17 Score=170.93 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=159.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
.+|..+++..++++. +++++|.+. + ++|+|||+|+.+++.++. ++| | |+++.+.+.++.
T Consensus 72 ~~Y~~~~g~~~Lrea----ia~~~~~~~------v--v~t~ggt~A~~~~~~all-----~pG---D-Vii~~p~~~~~~ 130 (460)
T PRK13238 72 EAYAGSRSYYRLEDA----VKDIFGYPY------T--IPTHQGRAAEQILFPVLI-----KKG---D-VVPSNYHFDTTR 130 (460)
T ss_pred cccCCCCCHHHHHHH----HHHHhCCCc------E--EECCCHHHHHHHHHHHhC-----CCC---C-EEccCCcccchH
Confidence 356677787777764 667777642 4 899999999999988875 378 8 888988788888
Q ss_pred HHHhhcCcEEEEeeCCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCCc-ccc---CHHHHHHHHHHc
Q 013675 241 KAAQYFNIKLWRVPVDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPHG-IID---PIQELGELALSH 302 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG-~id---di~~I~~la~~~ 302 (438)
..+...|.+++.+|+++ .+.+|+++|+++|++ +|++|++++|+||+| .+. ++++|+++|++|
T Consensus 131 ~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~ 210 (460)
T PRK13238 131 AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY 210 (460)
T ss_pred HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 88889999999999863 244999999999984 799999999999998 554 478999999999
Q ss_pred CCeEEEeccccchhhhhhhh--cCCCCCCCccC------CCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 303 GTCLHVDLCLGGFVLPFAKK--LGYPIPPFDFS------VQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~--~g~~~p~~~~~------~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
|++++.|+|+..-..-|... .|+. ..... ....|++++++||.+++|.| |+++.+++++....-.....
T Consensus 211 gi~li~Daa~~~e~a~f~~~~e~g~~--~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~ 287 (460)
T PRK13238 211 GIPVVIDAARFAENAYFIKQREPGYK--DKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCIL 287 (460)
T ss_pred CCEEEEECcchhhhhhhhhhcccccc--CCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccc
Confidence 99999999863211112110 1110 01110 12469999999999999987 88888875554332111111
Q ss_pred cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+.|. ...|..++....++..+++..-.+ +..+...+.+++|.+.|++. |+.+
T Consensus 288 ~~g~-----~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~-G~~~ 339 (460)
T PRK13238 288 YEGF-----PTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEA-GVPI 339 (460)
T ss_pred cCCc-----ccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHC-CCCe
Confidence 1111 111211222233444444322112 22333344578888888775 6654
No 140
>PRK12414 putative aminotransferase; Provisional
Probab=99.78 E-value=2.1e-17 Score=166.46 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=167.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC--C-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK--E-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|...++..++.+++.+++++++|.+ + ++ + ++|+|+++++.++++++.+ +| ++|+++.++|.
T Consensus 60 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~----i--~it~g~~~al~~~~~~l~~-----~g---d~Vlv~~p~y~ 125 (384)
T PRK12414 60 NQYAPMAGIAALREALAEKTERLYGARYDPASE----V--TVIASASEGLYAAISALVH-----PG---DEVIYFEPSFD 125 (384)
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc----E--EEECChHHHHHHHHHHhcC-----CC---CEEEEeCCCcc
Confidence 345455677888999999999999985 2 23 5 8999999999999988753 77 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEEecccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhVD~a~g 313 (438)
.+...++..|.+++.+|+++ ++.+|++++++++++++++|++++|+||||.+. ++++|+++|++||+++++|++|.
T Consensus 126 ~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 126 SYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE 205 (384)
T ss_pred chHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 99999999999999999985 678999999999998999999999999999984 58889999999999999999997
Q ss_pred chhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCC
Q 013675 314 GFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS 388 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gs 388 (438)
.+... +...+++. + ...+-.++..|++|.+. .+..+|+++..+ ++........ ..|.. +
T Consensus 206 ~~~~~-----~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~-~l~~~l~~~~~~~~~~~----------s 269 (384)
T PRK12414 206 HVVFD-----GARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA-ELMDEIRKVHQFMVFSA----------D 269 (384)
T ss_pred hccCC-----CCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH-HHHHHHHHHHhheecCC----------C
Confidence 54421 10011111 1 11122477888999842 445589977654 3332211111 01110 1
Q ss_pred CCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 389 RPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. ..++++...+.. ..+.+..+...+.++.+.+.|++. |++
T Consensus 270 ~-----~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 310 (384)
T PRK12414 270 T-----PMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFE 310 (384)
T ss_pred c-----HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 1 133333333321 234455666777888888888875 443
No 141
>PLN02187 rooty/superroot1
Probab=99.78 E-value=3.9e-17 Score=168.02 Aligned_cols=245 Identities=15% Similarity=0.140 Sum_probs=170.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
.|...++..++.+.+.+++.+.+|. ++++ | ++|+|+++++.+++.++.+ +| |+|+++.++|+.+
T Consensus 103 ~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----pG---d~Vlv~~P~y~~y 168 (462)
T PLN02187 103 SYGPGAGILPARRAVADYMNRDLPHKLTPED----I--FLTAGCNQGIEIVFESLAR-----PN---ANILLPRPGFPHY 168 (462)
T ss_pred CCCCCCChHHHHHHHHHHHHHhcCCCCCccc----E--EEeCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCCccH
Confidence 4445667777888888887766554 5554 6 8999999999999998863 78 9999999999999
Q ss_pred HHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
...++..|++++.+++. .++.+|+++|+++++++++++++++|+||||.+.+ +++|+++|+++|+++++|++|+.
T Consensus 169 ~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 169 DARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 99999999999999985 36899999999999999999999999999999977 78899999999999999999987
Q ss_pred hhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCC-CCCCCCcEEEEEeccccc----ccchhcccccCCCccCCCCccCC
Q 013675 315 FVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIR----KHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~----~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
+... +.+.+++ .+....-.++..++.|. +..+..+|+++..+++.. .........|... ..
T Consensus 249 l~f~-----~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~--------~~ 315 (462)
T PLN02187 249 TIFG-----DNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVT--------PD 315 (462)
T ss_pred cccC-----CCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhcccc--------CC
Confidence 5531 0000011 11111113566688999 555567999887554311 1111111111000 00
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
.+.....++.+++..-..+.+++..+...+.++++.+.|+++|++
T Consensus 316 ~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~ 360 (462)
T PLN02187 316 PATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV 360 (462)
T ss_pred CCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 001111222233322134567778888888999999999887654
No 142
>PRK07324 transaminase; Validated
Probab=99.78 E-value=2e-17 Score=165.98 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=160.8
Q ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675 157 HTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA 235 (438)
Q Consensus 157 ~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~ 235 (438)
....+.|....+..++++. ++++++ .++++ + ++|+|+++|+.+++.++. .+| ++|+++.++
T Consensus 52 ~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~~~~----v--i~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~P~ 113 (373)
T PRK07324 52 GQKKLTYGWIEGSPEFKEA----VASLYQNVKPEN----I--LQTNGATGANFLVLYALV-----EPG---DHVISVYPT 113 (373)
T ss_pred hcCCccCCCCCCCHHHHHH----HHHHhcCCChhh----E--EEcCChHHHHHHHHHHhC-----CCC---CEEEEcCCC
Confidence 3334455555565555554 555553 55655 6 899999999999998875 377 899999999
Q ss_pred cCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675 236 HSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL 310 (438)
Q Consensus 236 h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~ 310 (438)
|..+...++..|++++.+|+++ ++.+|+++++++++++|+++++++|+||||.+.+ +++|+++|+++|+++++|+
T Consensus 114 y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 114 YQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred chhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 9999999999999999999975 4578999999999999999999999999999988 8899999999999999999
Q ss_pred cccchhhhhhhhcCCCCCC-CccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 311 CLGGFVLPFAKKLGYPIPP-FDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~-~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
+|..+... +. .+. .+. ..-.+...++.|... .+..+|+++. ++++......... +. +...
T Consensus 194 ~y~~l~~~-----~~-~~s~~~~--~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~~-~~-------~~~~- 255 (373)
T PRK07324 194 VYRPLDED-----GS-TPSIADL--YEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRD-YT-------MICA- 255 (373)
T ss_pred cccccccC-----CC-CCChhhc--cCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHHhC-cE-------EecC-
Confidence 99765421 00 111 111 112355668889832 3345799876 4444432211110 00 0000
Q ss_pred CCCchHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 389 RPGGLIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. ....+++...+. ..-+++..+...++.+.+.+.|++.++++
T Consensus 256 --~--~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 299 (373)
T PRK07324 256 --G--VFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVS 299 (373)
T ss_pred --C--hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 0 113333333332 22344555556677778888888776654
No 143
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.78 E-value=4.6e-17 Score=164.89 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=164.4
Q ss_pred chhHHHHHHHHHHHHHHHhCC--CC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 166 FQSVARFEAEVIAMTAALLGN--KE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~--~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
.++..++.+.+.+++.+..|. ++ ++ + ++|+|+++++.+++.++. .+| |+|+++.++|+.+...
T Consensus 68 ~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~G~~~al~~~~~~~~-----~~G---d~Vlv~~P~y~~~~~~ 133 (399)
T PRK07681 68 LSGIQEFHEAVTEYYNNTHNVILNADKE----V--LLLMGSQDGLVHLPMVYA-----NPG---DIILVPDPGYTAYETG 133 (399)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCe----E--EECCCcHHHHHHHHHHhC-----CCC---CEEEECCCCccchHHH
Confidence 357777888888888877675 44 33 6 899999999999988875 377 8999999999999999
Q ss_pred HhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhh
Q 013675 243 AQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
++..|++++.+|+++ ++.+|++++++++.+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+..
T Consensus 134 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~ 213 (399)
T PRK07681 134 IQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYF 213 (399)
T ss_pred HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhee
Confidence 999999999999975 4678999999999889999999999999999988 77889999999999999999986643
Q ss_pred hhhhhcCCCCCCCccC-CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhccc--ccCCCccCCCCccCCCCCch
Q 013675 318 PFAKKLGYPIPPFDFS-VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT--EWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~-~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~--~~~g~~~~~~~~~gsr~~~~ 393 (438)
. .... .+-.... .....++..+++|.+. .+..+|+++. ++++.+....... .|.. +
T Consensus 214 ~---~~~~-~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~----------s----- 273 (399)
T PRK07681 214 D---GNKP-ISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGV----------F----- 273 (399)
T ss_pred C---CCCC-CChhhCCCCcccEEEEeecccccCCccceeEEEec-CHHHHHHHHHHHhhcccCC----------C-----
Confidence 1 0000 0001111 1123466778899842 3344899865 4444432211110 1100 0
Q ss_pred HHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 394 IAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 394 ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....++...+ +...+++..+...+..+++.+.|++. +++
T Consensus 274 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 315 (399)
T PRK07681 274 LPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWN 315 (399)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 11223333333 33455666777788888899999876 554
No 144
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.78 E-value=4.7e-17 Score=164.51 Aligned_cols=243 Identities=15% Similarity=0.149 Sum_probs=166.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
..|....+..++.+++.+++.+.+|.+ +++ .+ ++|+|+++++..++.++. .+| |+|+++.++|+.
T Consensus 67 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~---~i--~vt~G~~~al~~~~~~~~-----~~g---d~Vlv~~P~y~~ 133 (394)
T PRK05942 67 HGYPPFEGTASFRQAITDWYHRRYGVELDPDS---EA--LPLLGSKEGLTHLALAYV-----NPG---DVVLVPSPAYPA 133 (394)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCC---eE--EEccChHHHHHHHHHHhC-----CCC---CEEEEcCCCCcc
Confidence 344445566788888888888877753 332 14 789999999999988875 377 999999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
+...+...|++++.+|+++ ++.+|+++++++++++++++++++|+||||.+.+ +++|.++|+++|+++++|++|+
T Consensus 134 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~ 213 (394)
T PRK05942 134 HFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA 213 (394)
T ss_pred hHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 9999999999999999974 4679999999999999999999999999999987 7789999999999999999997
Q ss_pred chhhhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675 314 GFVLPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~ 390 (438)
.+.. + +...+++ .+. .....++..++.|.+ ..+..+|+++.+ +++.+.......... .+.+
T Consensus 214 ~~~~---~--~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~-~~l~~~l~~~~~~~~----------~~~~ 277 (394)
T PRK05942 214 ELAF---D--GYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN-RHIIQGLRTLKTNLD----------YGIF 277 (394)
T ss_pred hhcc---C--CCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-HHHHHHHHHHHhhcc----------cCCC
Confidence 6542 1 1000111 111 123345667778973 344558998764 444332111111000 0011
Q ss_pred CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....++-.+++ ...+..++..++..+..+++.+.|++. +++
T Consensus 278 ~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 319 (394)
T PRK05942 278 SALQKAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGEL-GWN 319 (394)
T ss_pred HHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 111112223332 234566777777888888888888765 443
No 145
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.78 E-value=2.8e-17 Score=166.16 Aligned_cols=232 Identities=17% Similarity=0.125 Sum_probs=164.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH---
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--- 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--- 242 (438)
.|....+|+ .++++.|.... +.+++|+.|+.+++.++. ++| |+||++...|.+....
T Consensus 60 nPtv~~lE~----~la~leg~~~a--------v~~~SG~aAi~~al~all-----~~G---D~VI~~~~~Y~~T~~~~~~ 119 (432)
T PRK06702 60 NPTLAAFEQ----KLAELEGGVGA--------VATASGQAAIMLAVLNIC-----SSG---DHLLCSSTVYGGTFNLFGV 119 (432)
T ss_pred CcHHHHHHH----HHHHHhCCCcE--------EEECCHHHHHHHHHHHhc-----CCC---CEEEECCCchHHHHHHHHH
Confidence 456666666 58888887532 789999999999998874 378 9999999998765554
Q ss_pred -HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 243 -AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
+..+|++++.++. .+|+++++++|+++|++|++.+|+||++.+.|+++|+++|+++|+++++|++++. |++
T Consensus 120 ~l~~~Gi~v~~vd~----~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~t---P~~- 191 (432)
T PRK06702 120 SLRKLGIDVTFFNP----NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLAT---PYL- 191 (432)
T ss_pred HHHHCCCEEEEECC----CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCc---hhh-
Confidence 6778999998864 4799999999999999999999999999999999999999999999999999853 221
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecc---------ccccc--chhcccccCCC----c-----
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNR---------EIRKH--QFVAVTEWSGG----L----- 379 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~---------~~~~~--~~~~~~~~~g~----~----- 379 (438)
.+....|+|++..|..||..+..+ .|+++.+.. .+... .+.. ..|... .
T Consensus 192 --------~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (432)
T PRK06702 192 --------CQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHG-VSYVQNFGAAAYIVKA 262 (432)
T ss_pred --------CChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccc-cchhhccchhhHHHHH
Confidence 223456899999999999655433 233321211 11100 0000 000000 0
Q ss_pred c-CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 380 Y-VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 380 ~-~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
. ......|...... .+|.++ .|.+.+..+.++..+++..+++.|++.|.++.+.|
T Consensus 263 ~~~~~~~~g~~~sp~--~a~l~~--rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~y 318 (432)
T PRK06702 263 RVQLLRDYGNCMSPF--NAYISN--IGLETLHLRMERHSENALAVAKWLADHERIEWVNY 318 (432)
T ss_pred HHHHHHHccCCCCHH--HHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence 0 0000113322322 566665 45577889999999999999999999998875544
No 146
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.78 E-value=1.1e-17 Score=167.27 Aligned_cols=213 Identities=21% Similarity=0.208 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~a~~~~Gi~ 249 (438)
.++.+.++++.|.+.. ++++||++|+.+++ ++. .+| ++|+++.+.|++. ...+..+|++
T Consensus 55 ~~le~~la~l~g~~~~--------~~~~sG~~ai~~~~-~ll-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~ 117 (366)
T PRK08247 55 GVLEQAIADLEGGDQG--------FACSSGMAAIQLVM-SLF-----RSG---DELIVSSDLYGGTYRLFEEHWKKWNVR 117 (366)
T ss_pred HHHHHHHHHHhCCCcE--------EEEcCHHHHHHHHH-HHh-----CCC---CEEEEecCCcCcHHHHHHHHhhccCce
Confidence 3444579999998642 78899999998765 333 267 8999999998873 4456678999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.... + . +
T Consensus 118 v~~vd~~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~---~-----~-p 183 (366)
T PRK08247 118 FVYVNTA-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL---Q-----R-P 183 (366)
T ss_pred EEEECCC-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc---c-----C-c
Confidence 9998863 89999999999999999999999999999999999999999999999999853322 1 1 1
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
. ..|+|+++.|.+|++.++.+ .|++..+++++........ ... |.... ...+|.+++ +.+
T Consensus 184 ~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~~----------g~~~s--~~~a~l~~~--~l~ 245 (366)
T PRK08247 184 L---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NAA----------GAVLS--PFDSWLLIR--GMK 245 (366)
T ss_pred h---hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hhc----------CCCCC--hHHHHHHHh--ccC
Confidence 2 24789999999999665544 5666655444432211111 111 11111 124566654 445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+..+.++..++++.+.+.|+++|++..
T Consensus 246 tl~~r~~~~~~~a~~l~~~L~~~p~v~~ 273 (366)
T PRK08247 246 TLALRMRQHEENAKAIAAFLNEQPGVTD 273 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 6677788889999999999999998764
No 147
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.78 E-value=2.5e-17 Score=169.07 Aligned_cols=244 Identities=12% Similarity=0.069 Sum_probs=165.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCcc-ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC---CC---cCcH
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQV-CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV---SA---HSAY 239 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v-~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~---~~---h~s~ 239 (438)
....++|+.+++..+++|+...+. + +.+-+.+|+.||..++.++.. +| |+|+..+ .. |.+.
T Consensus 76 ~~~d~lE~~~~~~~~~~f~~~~~~----~~~nv~~~SG~~AN~av~~aL~~-----pg---D~Il~~d~~~gGhl~H~~~ 143 (475)
T PLN03226 76 EYIDQIETLCQKRALEAFRLDPEK----WGVNVQPLSGSPANFAVYTALLQ-----PH---DRIMGLDLPHGGHLSHGYQ 143 (475)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcce----eEEecCcCchHHHHHHHHHHhCC-----CC---CEEEECCCCcCcchhhhhh
Confidence 356788888889999999998765 2 112248899999999999863 77 8998744 23 3333
Q ss_pred HHHHhhcCcE--EE--EeeCC-CCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 240 DKAAQYFNIK--LW--RVPVD-KEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 240 ~~a~~~~Gi~--v~--~v~~~-~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
...++.-+.. +. ..+.+ +++.+|+++|++++.+ ++++|++.. +.+|...|+++|+++|+++|++++||++++
T Consensus 144 ~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~--S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~ 221 (475)
T PLN03226 144 TDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGA--SAYPRDWDYARMRKIADKVGALLMCDMAHI 221 (475)
T ss_pred hcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEec--CcCCCccCHHHHHHHHHHcCCEEEEEchhh
Confidence 3332222222 22 33445 4789999999999874 677665533 347889999999999999999999999988
Q ss_pred chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc---ccc--CCCccCCCCccCC
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV---TEW--SGGLYVSPTVAGS 388 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~---~~~--~g~~~~~~~~~gs 388 (438)
.++++- -+.+. ++ .++|++++++|||+.||.| |+++++++ ......... .++ .-.....+...|+
T Consensus 222 ~Gli~~---~~~~~-p~----~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~ 291 (475)
T PLN03226 222 SGLVAA---QEAAS-PF----EYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYDYEDKINFAVFPGLQGG 291 (475)
T ss_pred hCcccC---CCCCC-CC----CCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHHHHHHHhccccCCccCCC
Confidence 776641 11111 22 3699999999999889998 88888654 221100000 000 0000011123344
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+-..++++.++++.+-..+++++.++..+++++|++.|.+ .|+++
T Consensus 292 p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l 337 (475)
T PLN03226 292 PHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKL 337 (475)
T ss_pred chHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEE
Confidence 44455788889998887778888999999999999999988 47664
No 148
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.78 E-value=8.2e-17 Score=162.16 Aligned_cols=243 Identities=18% Similarity=0.184 Sum_probs=167.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~ 241 (438)
.|....+..++.+.+.+++.+.+|.+.+. .+++ ++|+|+++++..++.++. .+| ++|+++.++|+.+..
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~~v--i~t~G~~~~l~~~~~~~~-----~~g---d~vlv~~P~y~~~~~ 130 (383)
T TIGR03540 62 RYPSYEGMLAYRQAVADWYKRRFGVELDP-ETEV--LSLIGSKEGIAHIPLAFV-----NPG---DIVLVPDPGYPVYRI 130 (383)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCC-CCeE--EECCCcHHHHHHHHHHhC-----CCC---CEEEEeCCCCcchHH
Confidence 34445566778888888888877764221 0025 788999999999988875 367 899999999999999
Q ss_pred HHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchh
Q 013675 242 AAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+++..|++++.+|+++ ++.+|++++++++.+++++|++++|+||||.+.+ +++|.++|++||+++++|++|+.+.
T Consensus 131 ~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 131 GTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred HHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 9999999999999974 4668999999999889999999999999999988 6889999999999999999997554
Q ss_pred hhhhhhcCCCCCCC-ccC-CCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 317 LPFAKKLGYPIPPF-DFS-VQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 317 ~pf~~~~g~~~p~~-~~~-~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
.. +...+++ ... .....++..++.|. ++.+| +|+++. ++++.+........+..+ -+..
T Consensus 211 ~~-----~~~~~~~~~~~~~~~~~i~~~SfSK~-~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~----------~~~~ 273 (383)
T TIGR03540 211 FD-----GYKAPSFLEVDGAKDVGIEFHSLSKT-YNMTGWRIGMAVG-NADLIAGLGKVKTNVDSG----------VFQA 273 (383)
T ss_pred cC-----CCCCcCcccCCCcccCEEEEEecccc-cCCccceeeEEeC-CHHHHHHHHHHHHhcccC----------CChH
Confidence 21 1101111 111 11234666788898 55555 898765 444443221111111000 0111
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
...++..++. -+.+..++..+...+.++.+.+.|++. ++.
T Consensus 274 ~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 313 (383)
T TIGR03540 274 IQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKI-GID 313 (383)
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 1122223332 234556777777888899999999876 554
No 149
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.78 E-value=2.8e-17 Score=167.10 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIK 249 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~ 249 (438)
.++.+.++++.|.+. . +++++|++|+..++.++. ++| ++|+++...|.+ +...+..+|++
T Consensus 60 ~~le~~lA~l~g~~~------~--v~~~sG~~Ai~~al~~l~-----~~G---d~Vl~~~~~y~~t~~~~~~~~~~~G~~ 123 (418)
T TIGR01326 60 DVLEQRIAALEGGVA------A--LAVASGQAAITYAILNLA-----QAG---DNIVSSSYLYGGTYNLFKHTLKRLGIE 123 (418)
T ss_pred HHHHHHHHHHhCCCe------E--EEEccHHHHHHHHHHHHh-----CCC---CEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence 455567999998742 2 899999999999998875 367 899999988755 34556778999
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
++.++.+ |+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+.. ..+
T Consensus 124 v~~v~~~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~---------~~~ 189 (418)
T TIGR01326 124 VRFVDPD-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL---------CRP 189 (418)
T ss_pred EEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc---------CCc
Confidence 9999853 89999999999999999999999999999999999999999999999999874321 112
Q ss_pred CccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccc--hhcc----cccCCCccCC---------------CCcc
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQ--FVAV----TEWSGGLYVS---------------PTVA 386 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~--~~~~----~~~~g~~~~~---------------~~~~ 386 (438)
+ ..|+|+++.|++|++ ++.| .|+++++.+...... +... +......... ....
T Consensus 190 l---~~g~Divv~S~sK~l-~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
T TIGR01326 190 I---DHGADIVVHSATKYI-GGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDL 265 (418)
T ss_pred h---hcCCeEEEECccccc-cCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhc
Confidence 2 347899999999995 4444 677677543322110 0000 0000000000 0001
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
|.... ...+|..+ .|.+.+..+.++..+++..+++.|.+.|++..+.|
T Consensus 266 G~~~~--p~~a~~~~--~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~y 313 (418)
T TIGR01326 266 GAALS--PFNAFLLL--QGLETLSLRMERHVENALKVAEFLEAHPKVAWVNY 313 (418)
T ss_pred CCCCC--HHHHHHHH--CCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 21221 12555554 45567777788888899999999999999876654
No 150
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.78 E-value=1.5e-17 Score=165.86 Aligned_cols=219 Identities=15% Similarity=0.120 Sum_probs=156.0
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~ 244 (438)
..|...++|+ .++++.|.+. + +.++||++|+.+++..+ ++| |+|+++...|......+.
T Consensus 52 ~~p~~~~le~----~lA~leg~~~------~--v~~~sG~aAi~~~l~~l------~~G---D~VI~~~~~yg~~~~~~~ 110 (364)
T PRK07269 52 KNPTRAKLEE----TLAAIESADY------A--LATSSGMSAIVLAFSVF------PVG---SKVVAVRDLYGGSFRWFN 110 (364)
T ss_pred CCccHHHHHH----HHHHHhCCCe------E--EEeCCHHHHHHHHHHHh------CCC---CEEEEecCCcCchHHHHH
Confidence 3455566665 5777877542 3 89999999999988532 377 999999887765433322
Q ss_pred hc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 245 YF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 245 ~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
.. ++++ ++..|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++....
T Consensus 111 ~~~~~~~~~~-------~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~--- 180 (364)
T PRK07269 111 QQEKEGRFHF-------TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY--- 180 (364)
T ss_pred HHHhcCcEEE-------EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc---
Confidence 21 2221 234589999999999999999999999999999999999999999999999999754321
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
......|+|+++.|.+|++.++.. .|+++.+++++.+...... .. .|...... .+|
T Consensus 181 ---------~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~~----------~G~~~s~~--~a~ 238 (364)
T PRK07269 181 ---------QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-NT----------TGAVLSPF--DSY 238 (364)
T ss_pred ---------CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-HH----------hCCCCCHH--HHH
Confidence 111235899999999999666554 5777777665443222111 01 12222222 556
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
..+ .|.+.+..+.++..+++.++.+.|++.|+++-++|
T Consensus 239 l~~--~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~y 276 (364)
T PRK07269 239 LLM--RGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLY 276 (364)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeC
Confidence 555 45567899999999999999999999998765544
No 151
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.77 E-value=1.5e-17 Score=166.40 Aligned_cols=217 Identities=17% Similarity=0.098 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH----HHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK----AAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~----a~~~~Gi 248 (438)
.+.+.+.++.+-+.+.. +++++|++|+..++.++. ++| |+|+++.+.|.++.. .++.+|+
T Consensus 66 ~~~Le~~la~le~~~~~--------v~~sSG~aAi~~~l~all-----~~G---D~Vlv~~~~Y~~~~~l~~~~l~~~Gi 129 (395)
T PRK05967 66 TDALCKAIDALEGSAGT--------ILVPSGLAAVTVPFLGFL-----SPG---DHALIVDSVYYPTRHFCDTMLKRLGV 129 (395)
T ss_pred HHHHHHHHHHHhCCCCE--------EEECcHHHHHHHHHHHhc-----CCC---CEEEEccCCcHHHHHHHHHHHHhcCe
Confidence 33445567777765421 677779999999998875 378 999999999988764 5677899
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
+++.++.+ +.++++++++++|++|++++|+||++.+.|+++|+++|+++|++++||++++..+.
T Consensus 130 ~v~~vd~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~----------- 193 (395)
T PRK05967 130 EVEYYDPE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY----------- 193 (395)
T ss_pred EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----------
Confidence 99998653 45889999999999999999999999999999999999999999999999865322
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
++....|+|++..|..||..|-.+ .|++. .+++........... .|.-.. ...+|..+ .|.
T Consensus 194 -~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~-~~~~~~~~l~~~~~~-----------~G~~~~--p~da~l~~--rgl 256 (395)
T PRK05967 194 -FRPLDFGVDISIHAATKYPSGHSDILLGTVS-ANEKCWPQLLEAHGT-----------LGLCAG--PDDTYQIL--RGL 256 (395)
T ss_pred -cChhHcCCCEEEEecccccCCCCCeeEEEEE-cCHHHHHHHHHHHHH-----------cCCCCC--HHHHHHHH--cCc
Confidence 334456999999999999433221 56544 333322111111100 121111 12566555 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+-+.-+.++..++|..+++.|++.|.++-+.|
T Consensus 257 ~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~y 288 (395)
T PRK05967 257 RTMGIRLEHHRKSALEIARWLEGRPDVARVLH 288 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCcEEEC
Confidence 88899999999999999999999998865544
No 152
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.77 E-value=1.3e-16 Score=160.71 Aligned_cols=238 Identities=17% Similarity=0.179 Sum_probs=164.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
|....+..++.+.+.+++.+.+|.+ +++ ++ ++|+|+++++..++.++.+ +| |+|+++.++|+.+.
T Consensus 65 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i--i~t~G~~~~i~~~~~~~~~-----~g---d~Vl~~~P~y~~~~ 131 (385)
T PRK09276 65 YPSYEGMLEFRKAVADWYKRRFGVELDPET---EV--ISLIGSKEGIAHIPLAFVN-----PG---DVVLVPDPGYPVYK 131 (385)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cE--EEccCcHHHHHHHHHHhCC-----CC---CEEEEcCCCCcChH
Confidence 4334456677888888888777753 332 15 7889999999999888763 67 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.+++..|++++.+|+++ ++.+|++++++++.+++++|++++|+||||.+.+ +++|+++|++||+++++|.+|+.+
T Consensus 132 ~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~ 211 (385)
T PRK09276 132 IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEI 211 (385)
T ss_pred HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhhe
Confidence 99999999999999974 4678999999999889999999999999999987 578889999999999999999765
Q ss_pred hhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 316 VLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
... +...+++. . ...+..++..++.|. ++.+| +|+++.. +++..........+..+ -+
T Consensus 212 ~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~----------~~- 273 (385)
T PRK09276 212 AYD-----GYKPPSFLEVPGAKDVGIEFHSLSKT-YNMTGWRIGFAVGN-ADLIAGLGKVKSNVDSG----------VF- 273 (385)
T ss_pred ecC-----CCCCCChhccCCCcCCEEEEecchhh-cCCcchhheeeeCC-HHHHHHHHHHHhhccCC----------CC-
Confidence 431 11011111 1 112345667788898 55555 8987654 44433221111100000 01
Q ss_pred chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....++...+ ....+++..++..+.++++.+.|+++ +++
T Consensus 274 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 315 (385)
T PRK09276 274 --QAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLE 315 (385)
T ss_pred --HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 11222222223 24556677777788889999999876 443
No 153
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=3.1e-17 Score=163.32 Aligned_cols=224 Identities=16% Similarity=0.099 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.++++++.++++ + ++|+|+++++.+++.++. .+| ++|+++.+.|..+..+++..|++++.+
T Consensus 62 ~~lr~~ia~~~~~~~~~----i--~it~G~~~~l~~~~~~l~-----~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v 127 (351)
T PRK14807 62 EKLREELARYCSVVPTN----I--FVGNGSDEIIHLIMLAFI-----NKG---DVVIYPHPSFAMYSVYSKIAGAVEIPV 127 (351)
T ss_pred HHHHHHHHHHhCCCccc----E--EEecCHHHHHHHHHHHhc-----CCC---CEEEEeCCChHHHHHHHHHcCCeEEEe
Confidence 35566788888988776 6 899999999999888865 377 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 254 PVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
++++++.+|++++++++++ +++++++++|+||||.+.+.+++.++|++++.++++|++|+.+.- ...++. .
T Consensus 128 ~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~-------~~~~~~-~ 199 (351)
T PRK14807 128 KLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYG-------NTIVDV-I 199 (351)
T ss_pred ecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcc-------cchHHH-h
Confidence 9988889999999999975 899999999999999999999999999998899999999975421 001111 0
Q ss_pred CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675 333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE 411 (438)
Q Consensus 333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~ 411 (438)
....-.++..|++|... .+..+|+++. ++++..........|. .. ..++.++...+....+++
T Consensus 200 ~~~~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~-------------~~--~~~q~~~~~~l~~~~~~~ 263 (351)
T PRK14807 200 NEFENLIVLRTLSKAFGLAGLRVGYAVA-NENILKYLNLVKSPYN-------------IN--SLSQVIALKVLRTGVLKE 263 (351)
T ss_pred hhCCCEEEEecchHhcccchhceeeeec-CHHHHHHHHHccCCCC-------------cC--HHHHHHHHHHHhHHHHHH
Confidence 11123577788899953 4456898765 3444332111111110 01 124444444454445677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccc
Q 013675 412 NTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..++..+.++++.+.|++++|+++
T Consensus 264 ~~~~~~~~r~~l~~~l~~~~g~~~ 287 (351)
T PRK14807 264 RVNYILNERERLIKELSKIPGIKV 287 (351)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEE
Confidence 777788888889999988777653
No 154
>PRK09082 methionine aminotransferase; Validated
Probab=99.77 E-value=3.6e-17 Score=164.95 Aligned_cols=241 Identities=18% Similarity=0.182 Sum_probs=168.8
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~ 241 (438)
.|...++..++++++.+++.+++|.+.+. ..++ ++|+|+++|+.+++.++. .+| |+|+++.+.|.++..
T Consensus 62 ~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~-~~~i--~~t~G~~~al~~~~~~~~-----~~g---d~Vli~~p~y~~~~~ 130 (386)
T PRK09082 62 QYPPMTGVAALREAIAAKTARLYGRQYDA-DSEI--TVTAGATEALFAAILALV-----RPG---DEVIVFDPSYDSYAP 130 (386)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCC-CCcE--EEeCCHHHHHHHHHHHHc-----CCC---CEEEEeCCCchhhHH
Confidence 34445678889999999999998875321 0015 899999999999998875 367 899999999999999
Q ss_pred HHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 242 AAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
+++..|.+++.+|+++ ++.+|+++++++++++++++++++|+||||.+ +++++|.++|++||+++++|.+|+.+..
T Consensus 131 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~ 210 (386)
T PRK09082 131 AIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210 (386)
T ss_pred HHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhcc
Confidence 9999999999999974 78999999999999999999999999999987 5688999999999999999999976543
Q ss_pred hhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCCCCch
Q 013675 318 PFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 318 pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr~~~~ 393 (438)
. ...+ .+.... ......++..++.|.+. .+..+|+++.. +++........ ..|. ..
T Consensus 211 ~--~~~~--~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l~~~~~~~~~~~~~~-------------~~-- 270 (386)
T PRK09082 211 D--GAGH--ASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AALSAEFRKVHQYNTFT-------------VN-- 270 (386)
T ss_pred C--CCCC--CChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHHHHHHHHHHhhhcCC-------------CC--
Confidence 1 1000 000111 11234577778899842 33458987764 34332211110 1111 00
Q ss_pred HHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 394 IAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 394 ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
...+.++...+ ..+..++..+...++.+++.+.|++. +++
T Consensus 271 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 312 (386)
T PRK09082 271 TPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFK 312 (386)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 11222222222 34556666777788888888888764 444
No 155
>PRK07550 hypothetical protein; Provisional
Probab=99.77 E-value=9.4e-17 Score=161.89 Aligned_cols=241 Identities=19% Similarity=0.173 Sum_probs=166.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
.|...++..++++.+.+++.+..|.+ +++ + ++|+|+++++.+++.++. ++| ++|+++.+.|..+
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vlv~~p~y~~~ 127 (386)
T PRK07550 62 LYGPVEGLPELREAYAAHYSRLYGAAISPEQ----V--HITSGCNQAFWAAMVTLA-----GAG---DEVILPLPWYFNH 127 (386)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCcce----E--EEecCcHHHHHHHHHHhc-----CCC---CEEEEcCCCCcch
Confidence 34455678888888888988887753 443 6 899999999999888875 367 8999999999999
Q ss_pred HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
...++..|++++.+++++ ++.+|+++++++++++++++++++|+||||.+.+ +++|+++|+++|+++++|++|+.
T Consensus 128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~ 207 (386)
T PRK07550 128 KMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRD 207 (386)
T ss_pred HHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence 999999999999999974 5678999999999999999999999999999876 78999999999999999999986
Q ss_pred hhhhhhhhcCCCCCCCccCCCC-ccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 315 FVLPFAKKLGYPIPPFDFSVQG-VTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~~~~~g-vdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
+.. ..+...+.+.....+ -.++..+++|... ....+|+++..++ +..........+. ...+..
T Consensus 208 ~~~----~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~~~~~~~--------~~~s~~-- 272 (386)
T PRK07550 208 FDS----GGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPA-RIAEIEKFMDTVA--------ICAPRI-- 272 (386)
T ss_pred hcc----CCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHH-HHHHHHHHHhhcc--------cCCCcH--
Confidence 531 011101111111112 2456778999843 3456898877543 3222111111000 001111
Q ss_pred hHHHHHHHHHHHc--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 393 LIAGAWAALMSLG--QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 393 ~ia~~~aal~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+++++...+. .+..++..++..+.++++.+.|++++++.
T Consensus 273 ---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 313 (386)
T PRK07550 273 ---GQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWE 313 (386)
T ss_pred ---HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 2222222222 33445566677788888888888765543
No 156
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.77 E-value=3e-16 Score=159.34 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=168.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
+|....+..++.+.+.+++.+.+|. ++++ + ++|+|+++++.+++.++.+ +| ++|+++.++|+.+
T Consensus 69 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~v~v~~P~y~~~ 134 (409)
T PLN00143 69 SYAPTGGILPARRAIADYLSNDLPYQLSPDD----V--YLTLGCKHAAEIIIKVLAR-----PE---ANILLPRPGFPDV 134 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhh----E--EEecChHHHHHHHHHHHcC-----CC---CEEEEcCCCCcCH
Confidence 3545566777888877787776654 4444 6 8999999999999998763 77 8999999999999
Q ss_pred HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
...++..|++++.+++++ ++.+|+++|+++++++++.+++++|+||||.+.+ +++|.++|++|++++++|++|..
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 214 (409)
T PLN00143 135 ETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGH 214 (409)
T ss_pred HHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 999999999999999853 5789999999999889999999999999999987 67888899999999999999986
Q ss_pred hhhhhhhhcCCCCCCCc-cCCCCccEEEeCCCCC-CCCCCCcEEEEEecc-ccccc-----chhcccccCCCccCCCCcc
Q 013675 315 FVLPFAKKLGYPIPPFD-FSVQGVTSISVDVHKY-GLAPKGTSVVLYRNR-EIRKH-----QFVAVTEWSGGLYVSPTVA 386 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~-~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~-~~~~~-----~~~~~~~~~g~~~~~~~~~ 386 (438)
+.. + +...+++. +....-.++..++.|. +..+..+|+++..++ .+.+. .+..... ...
T Consensus 215 l~~---~--~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~--------~~~- 280 (409)
T PLN00143 215 IVF---G--SKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALN--------PAP- 280 (409)
T ss_pred ccc---C--CCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHh--------ccC-
Confidence 543 1 10011111 1111124677788999 566677999887543 22211 0100000 000
Q ss_pred CCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 387 GSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
.. + .. .+.++...+ ....+++..++..+..+++.+.|+++++.
T Consensus 281 ~~-~-~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 326 (409)
T PLN00143 281 FP-P-TF--IQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI 326 (409)
T ss_pred CC-C-ch--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 00 0 11 222333223 24567788888888888899998877543
No 157
>PLN02242 methionine gamma-lyase
Probab=99.77 E-value=1.6e-17 Score=168.30 Aligned_cols=216 Identities=17% Similarity=0.102 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-- 243 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-- 243 (438)
.|...++| +.+++++|.+.. ++++||++|+..++.++.. +| |+|+++.+.|......+
T Consensus 75 ~Pt~~~LE----~~lA~l~g~~~~--------l~~~sG~~Ai~~al~al~~-----~G---D~Vl~~~~~Y~~~~~~~~~ 134 (418)
T PLN02242 75 NPTVLNLG----RQMAALEGTEAA--------YCTASGMSAISSVLLQLCS-----SG---GHVVASNTLYGGTHALLAH 134 (418)
T ss_pred ChhHHHHH----HHHHHHhCCCeE--------EEEccHHHHHHHHHHHHhC-----CC---CEEEEcCCcHHHHHHHHHH
Confidence 45445444 468999988642 7899999999999998763 77 99999999887776654
Q ss_pred ---hhcCcEEEEeeCCCCCccCHHHHHHhhccC-cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 244 ---QYFNIKLWRVPVDKEFRADVKAIKKYINRN-TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 244 ---~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~-t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
+..|++++.++.+ |+++++++|+++ |++|++++|+||+|.+.|+++|+++|+++|+++++|.+|+.+..
T Consensus 135 ~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~-- 207 (418)
T PLN02242 135 FLPRKCNITTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL-- 207 (418)
T ss_pred hhhhccCceEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--
Confidence 3578888877654 899999999984 99999999999999999999999999999999999999853221
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~ 397 (438)
+....|+|+++.+++|++.++.. .|+++. ++++.......... . ....|.... ..
T Consensus 208 -----------~~~~~g~divv~S~SK~l~g~g~~~gG~iv~-~~~li~~l~~~~~~---~----~~~~g~~~~----~~ 264 (418)
T PLN02242 208 -----------SPARLGADVVVHSISKFISGGADIIAGAVCG-PAELVNSMMDLHHG---A----LMLLGPTMN----PK 264 (418)
T ss_pred -----------CHHHcCCcEEEEeCccccCCCCCceEEEEEc-CHHHHHHHHHHhhh---h----hhccCCCCC----HH
Confidence 12233689999999999544433 466554 44443321111100 0 001122222 23
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
.+++...+...+..+.++..++++++.+.|++++
T Consensus 265 ~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 265 VAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333335556677788899999999999999883
No 158
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.77 E-value=1.1e-16 Score=162.68 Aligned_cols=240 Identities=15% Similarity=0.107 Sum_probs=165.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHhC--------CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLG--------NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV 233 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g--------~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~ 233 (438)
.|....+..++.+.+.+++.+.++ .++++ + ++|+|+++++.+++.++.. +| ++|+++.
T Consensus 70 ~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~~-----~g---d~vlv~~ 135 (412)
T PTZ00433 70 GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDN----V--VLCSGVSHAILMALTALCD-----EG---DNILVPA 135 (412)
T ss_pred CCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhh----E--EEeCChHHHHHHHHHHhcC-----CC---CEEEEcc
Confidence 344445667777777777776543 44554 6 8999999999999998763 67 8999999
Q ss_pred CCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675 234 SAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV 308 (438)
Q Consensus 234 ~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV 308 (438)
++|+.+...++..|++++.+|+++ ++.+|++++++++++++++|++++|+||||.+.+ +++|.++|+++|+++++
T Consensus 136 P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 136 PGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred CCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999864 6789999999999989999999999999998765 77889999999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc-----cccccchhccc-ccCCCccC
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR-----EIRKHQFVAVT-EWSGGLYV 381 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~-----~~~~~~~~~~~-~~~g~~~~ 381 (438)
|++|..+... ...-..+..++. ..-.++..++.|.+ ..+..+|+++..++ ++......... .|.
T Consensus 216 De~y~~~~~~--~~~~~~~~~~~~--~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~----- 286 (412)
T PTZ00433 216 DEIYAGMVFN--GATFTSVADFDT--TVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCG----- 286 (412)
T ss_pred eccccccccC--CCCccchhhccC--CCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCC-----
Confidence 9999865431 000000101111 11135677889984 56677999887432 12211101000 010
Q ss_pred CCCccCCCCCchHHHHHHHHHHH--c-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 382 SPTVAGSRPGGLIAGAWAALMSL--G-QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 382 ~~~~~gsr~~~~ia~~~aal~~~--g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.. ...+.++...+ + ...+++..++..+..+.+.+.|++..++.
T Consensus 287 --------~~--~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 332 (412)
T PTZ00433 287 --------PC--SVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS 332 (412)
T ss_pred --------CC--hHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 00 11222222222 1 34566677788888888999998765554
No 159
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.77 E-value=6.3e-17 Score=167.68 Aligned_cols=189 Identities=15% Similarity=0.162 Sum_probs=143.5
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
...|....+..++.+.+.+++.+..|.+ +++ | ++|+|+++++.++++++.. .+| |+|+++.++|+
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~~~~~l~~----~~g---D~Vlv~~P~y~ 174 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSD----I--FLTDGASSGIKLLLQLLIG----DPS---DGVMIPIPQYP 174 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcCCCCChhh----E--EEcCCHHHHHHHHHHHhcc----CCC---CEEEECCCCch
Confidence 3456667788888888888888776654 444 7 8999999999999998751 267 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
.+...++..|.+++.+|+++ ++.+|+++|++++++ +|+++++++|+||||.+.+ +++|+++|++||+++
T Consensus 175 ~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~i 254 (481)
T PTZ00377 175 LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVL 254 (481)
T ss_pred hHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEE
Confidence 99999999999999999975 468999999999975 7899999999999999988 789999999999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCC-----ccCCC---Cc-cEEEeCCCCCCC--CCCCcEEEEEe--ccccc
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPF-----DFSVQ---GV-TSISVDVHKYGL--APKGTSVVLYR--NREIR 365 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~-----~~~~~---gv-dsis~s~hK~~~--~p~g~g~l~~r--~~~~~ 365 (438)
++|++|+.+... . +.+.+++ +.... +. .++..+..|.++ ++..+|+++.. ++++.
T Consensus 255 I~De~Y~~l~~~--~--~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li 322 (481)
T PTZ00377 255 MADEVYQENIYD--G--EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR 322 (481)
T ss_pred EEehhhHhhccC--C--CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH
Confidence 999999765430 0 0000011 00000 11 245568899644 46678998762 44443
No 160
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.77 E-value=1.1e-16 Score=161.76 Aligned_cols=235 Identities=13% Similarity=0.188 Sum_probs=159.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
|....+..++++.+.+++...+|.+ +++ + ++|+|+++++.+++.++. .+| ++|+++.+.|..+
T Consensus 63 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~-----~~g---d~vl~~~p~y~~~ 128 (391)
T PRK07309 63 YTGMAGLLELRQAAADFVKEKYNLDYAPENE----I--LVTIGATEALSASLTAIL-----EPG---DKVLLPAPAYPGY 128 (391)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEeCCCCcch
Confidence 4344566778888888888777763 233 6 899999999999988865 367 8999999999999
Q ss_pred HHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675 240 DKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~ 312 (438)
...++..|++++.+|+++ ++.+|++++++++++ +++++++++|+||||.+.+ +++|+++|++||+++++|++|
T Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 129 EPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccc
Confidence 999999999999999876 568999999999864 6899999999999999865 889999999999999999999
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
+.+... +...+++......-.++..|++|... ....+|+++.. +++....... ..|.. ....
T Consensus 209 ~~~~~~-----~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~-~~~~~~~~~~-~~~~~----------~~~~ 271 (391)
T PRK07309 209 SELTYT-----GEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP-AEFTAQLIKS-HQYLV----------TAAT 271 (391)
T ss_pred cceeeC-----CCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC-HHHHHHHHHH-Hhhcc----------cCCC
Confidence 865431 10011111011123477788999942 33448887765 3443322111 11110 0001
Q ss_pred chHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 392 GLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 392 ~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.. .+.++...+ +........++..+.++++.+.|++.
T Consensus 272 ~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 272 TM--AQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred hH--HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 11 222323223 22223344556667778888888775
No 161
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.77 E-value=2e-16 Score=160.43 Aligned_cols=246 Identities=16% Similarity=0.177 Sum_probs=161.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
+...++..++++.+.+++....+. ++++ + ++|+|+|+|+.+++.++.. +| ++|+++.++|+.+.
T Consensus 69 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----i--i~t~G~t~al~~~~~~l~~-----~g---d~Vlv~~p~y~~~~ 134 (403)
T TIGR01265 69 YAPSVGALAAREAVAEYLSSDLPGKLTADD----V--VLTSGCSQAIEICIEALAN-----PG---ANILVPRPGFPLYD 134 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCHHH----E--EEecChHHHHHHHHHHhCC-----CC---CEEEEeCCCchhHH
Confidence 333455555555544444433232 3333 6 8999999999999998762 67 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
..+...|++++.+++++ ++.+|+++++++++++++++++++|+||||.+.+ +++|.++|+++|+++++|++|+.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 214 (403)
T TIGR01265 135 TRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHM 214 (403)
T ss_pred HHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 99999999999998853 5789999999999999999999999999999976 889999999999999999999866
Q ss_pred hhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCC-CCCCCCcEEEEEecc-cccccchhc-ccccCCCccCCCCccCCCCC
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKY-GLAPKGTSVVLYRNR-EIRKHQFVA-VTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~-~~~p~g~g~l~~r~~-~~~~~~~~~-~~~~~g~~~~~~~~~gsr~~ 391 (438)
... . .+.+++....... -+++.|+.|. +..+..+|+++..++ ......+.. ...... ... + .+.
T Consensus 215 ~~~--~---~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-----~~~-~-~~~ 282 (403)
T TIGR01265 215 VFG--D---APFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-----RIL-G-PAT 282 (403)
T ss_pred ccC--C---CCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-----hhc-C-CCh
Confidence 531 0 0001111001111 3566788998 445567999887643 211110000 000000 000 0 011
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
....++-.++......-+++..+++.+.++++.+.|+++++++
T Consensus 283 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (403)
T TIGR01265 283 IVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLV 325 (403)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 1111222333222234566677788888899999998877765
No 162
>PLN02231 alanine transaminase
Probab=99.77 E-value=1.5e-16 Score=165.66 Aligned_cols=245 Identities=14% Similarity=0.177 Sum_probs=169.8
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
...|..+.|..++.+.+.+++.+..|.+ +++ | ++|+|+++++.++++++.. .+| |.|+++.+.|+
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~----I--~iT~Ga~~ai~~~~~~l~~----~~g---d~Vli~~P~Y~ 227 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPND----I--FLTDGASPAVHMMMQLLIR----SEK---DGILCPIPQYP 227 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccCCCCCccc----E--EEeCCHHHHHHHHHHHhcc----CCC---CEEEEeCCCCh
Confidence 3557778888999999999988876754 444 7 8999999999999998752 256 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
.+..++..+|.+++.+++++ ++.+|+++|++++++ +++++++++|+||||.+.+ +++|.++|++||+++
T Consensus 228 ~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~l 307 (534)
T PLN02231 228 LYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVL 307 (534)
T ss_pred hHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999985 479999999999975 6899999999999999976 678899999999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCCc-c------CCCCccEE-EeCCCCCCC--CCCCcEEEEEe--cccccccchhcccc
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPFD-F------SVQGVTSI-SVDVHKYGL--APKGTSVVLYR--NREIRKHQFVAVTE 374 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~~-~------~~~gvdsi-s~s~hK~~~--~p~g~g~l~~r--~~~~~~~~~~~~~~ 374 (438)
++|++|..+... . +...+++. . ....+..+ ..|..|.++ ++..+|++... ++++.+.......
T Consensus 308 I~DEvY~~l~y~--~--~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~- 382 (534)
T PLN02231 308 LADEVYQENVYV--P--DKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS- 382 (534)
T ss_pred EEEccchhcccC--C--CCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-
Confidence 999999865431 0 00000110 0 01122234 448899533 56779998763 4444433221110
Q ss_pred cCCCccCCCCccCCCCCchHHHHHHHHHHH-----cHHHH-------HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSL-----GQEGY-------LENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-----g~~g~-------~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
...+.+ ..+..++...+ |...| +++.+...+.++.+.+.|++++|+++
T Consensus 383 --------~~~~s~-----~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~ 442 (534)
T PLN02231 383 --------VNLCSN-----ISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC 442 (534)
T ss_pred --------hhcCCC-----hHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 001101 11222222222 11222 23456778888999999998888764
No 163
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.76 E-value=3.5e-17 Score=166.26 Aligned_cols=226 Identities=18% Similarity=0.159 Sum_probs=157.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh----hcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ----YFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~----~~Gi~v 250 (438)
++.+.++++.|.+. . +++++|++|+..++.++.. +| ++|+++...|......+. ..|+++
T Consensus 62 ~Le~~lA~l~g~~~------~--l~~ssG~~Ai~~al~al~~-----~G---d~Vl~~~~~Y~~t~~~~~~~l~~~gi~v 125 (425)
T PRK06084 62 VLEQRVAALEGGVG------A--LAVASGMAAITYAIQTIAE-----AG---DNIVSVAKLYGGTYNLLAHTLPRIGIET 125 (425)
T ss_pred HHHHHHHHHhCCCc------e--eEehhHHHHHHHHHHHHhC-----CC---CEEEEeCCCcchHHHHHHHhcccceeEE
Confidence 44456888888643 2 7889999999999998763 67 899999988875444433 357777
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
..++. .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+.. .
T Consensus 126 ~~~d~-----~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~------------~ 188 (425)
T PRK06084 126 RFAAH-----DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL------------C 188 (425)
T ss_pred EEECC-----CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc------------C
Confidence 77764 389999999999999999999999999999999999999999999999999874322 1
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC-cEEEEEeccccc-----ccc--hh-cccccCCCccCCCC----------------c
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIR-----KHQ--FV-AVTEWSGGLYVSPT----------------V 385 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~-----~~~--~~-~~~~~~g~~~~~~~----------------~ 385 (438)
+....|+|+++.|++||+.++.. .|.+++.+.... ... +. ..+.|.+ .+.... .
T Consensus 189 ~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 267 (425)
T PRK06084 189 RPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHG-VTYTEAFGPAAFIGRCRVVPLRN 267 (425)
T ss_pred ChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccccc-chhhhhcchHHHHHHHHHHHHHh
Confidence 11235799999999999655432 343444322210 010 00 0111111 100000 0
Q ss_pred cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.|.+.... .+|..+ .|.+.+..+.++..+++..+++.|+++|+++-+.|
T Consensus 268 ~g~~l~~~--~a~l~l--rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y 316 (425)
T PRK06084 268 MGAALSPF--NAFLIL--QGLETLALRMERHTENALKVARYLQQHPQVAWVKY 316 (425)
T ss_pred cCCCCCHH--HHHHHH--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 12222222 455444 56788999999999999999999999999875554
No 164
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.76 E-value=1.5e-17 Score=165.75 Aligned_cols=235 Identities=11% Similarity=0.043 Sum_probs=171.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC--cHHH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS--AYDK 241 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~--s~~~ 241 (438)
..++.+.++.+++++.+++++|.+.+. + +.+++++||.++..++..+.. +| +++++.....+ .+.+
T Consensus 41 hr~~~f~~~~~~~~~~l~~l~~~~~~~---~-v~~~~gsgt~~~Ea~~~nl~~-----~g---~~~l~i~~G~fg~r~~~ 108 (360)
T PRK05355 41 HRSKEFEAVAEEAEADLRELLNIPDNY---K-VLFLQGGASLQFAMVPMNLLG-----GG---KKADYVDTGSWSKKAIK 108 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCc---E-EEEEcCCchHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHHH
Confidence 456777889999999999999985432 1 335567788888888877653 45 44443333322 2577
Q ss_pred HHhhcCcEEEEeeCCC-CCccCHHHHHH-hhccCcEEEEEecCCCCCcccc-CHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 242 AAQYFNIKLWRVPVDK-EFRADVKAIKK-YINRNTVLIVGSAPGFPHGIID-PIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~-~I~~~t~~vv~~~~~~~tG~id-di~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
.++.+|.. +.++.++ .+..+..++++ ++++++++|.++|..|.||.+. |+++| +|+.++||++++.+..
T Consensus 109 ~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~- 180 (360)
T PRK05355 109 EAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR- 180 (360)
T ss_pred HHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc-
Confidence 88889975 6676664 56666666666 8888899999999999999997 77776 8999999999754433
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc--ccccCCCccCCCCccCCCCCchHHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA--VTEWSGGLYVSPTVAGSRPGGLIAG 396 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~--~~~~~g~~~~~~~~~gsr~~~~ia~ 396 (438)
++|... .|++++++||+ ++|+|.|+++++++.+.+..-.. ..+|... .......|+.+-..+++
T Consensus 181 ----------~idv~~--~d~~~~ssqK~-lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~Tp~~~~i~a 246 (360)
T PRK05355 181 ----------PIDVSK--FGLIYAGAQKN-IGPAGLTIVIVREDLLGRALPSIPSMLDYKTH-ADNDSMYNTPPTFAIYL 246 (360)
T ss_pred ----------cCCHHH--ccEEEEecccc-ccCCceEEEEECHHHHhhcccCCChHHHHHHH-HhcCCccCCCcHHHHHH
Confidence 355544 46999999998 57999999999976553321100 0011100 01122347777788999
Q ss_pred HHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 397 AWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 397 ~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
+.++++++-.+ |++++.++..++++++++.|++++.
T Consensus 247 L~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~ 283 (360)
T PRK05355 247 AGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF 283 (360)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888 8999999999999999999999863
No 165
>PRK07683 aminotransferase A; Validated
Probab=99.76 E-value=2e-16 Score=159.51 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=166.5
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC
Q 013675 159 NPLHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA 235 (438)
Q Consensus 159 n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~ 235 (438)
+...|...++..++++++.+++.+.+|. +++ + + ++|+|+++|+.+++.++. ++| ++|+++.+.
T Consensus 57 ~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~----I--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~ 122 (387)
T PRK07683 57 NYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESE----I--IVTIGASEAIDIAFRTIL-----EPG---TEVILPAPI 122 (387)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEeCChHHHHHHHHHHhC-----CCC---CEEEEcCCC
Confidence 3344444566778888888888776665 444 4 6 899999999999988865 267 899999999
Q ss_pred cCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecc
Q 013675 236 HSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 236 h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a 311 (438)
|+.+..+++..|++++.+|+++ ++.+|++++++.++++++++++++|+||||.+.+ +++|.++|+++|+++++|++
T Consensus 123 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~ 202 (387)
T PRK07683 123 YPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEI 202 (387)
T ss_pred ccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecc
Confidence 9999999999999999999975 6778999999999989999999999999999865 78899999999999999999
Q ss_pred ccchhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675 312 LGGFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr 389 (438)
|..+... .. . .+-..+ ...+-.++..+..|.+. .+..+|++.... ++.+..... ..|... .
T Consensus 203 y~~~~~~--~~-~--~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~-~l~~~~~~~-~~~~~~----------~ 265 (387)
T PRK07683 203 YSELVYE--QP-H--TSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS-YLAKHILKV-HQYNVT----------C 265 (387)
T ss_pred cccceeC--CC-c--CChhhccCCcCCeEEEeeccccccCccceeEEEEcCH-HHHHHHHHH-HHhccC----------C
Confidence 9865421 10 0 111111 11223577788899954 445589877654 333221111 111110 0
Q ss_pred CCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 390 PGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 390 ~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.... ++.++...+ |...+++..++..+.++++.+.|++.
T Consensus 266 ~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (387)
T PRK07683 266 ASSI--SQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM 306 (387)
T ss_pred CChH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111 222222222 44556667777788888888888765
No 166
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.76 E-value=1.9e-16 Score=161.17 Aligned_cols=168 Identities=21% Similarity=0.286 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC------cHHHHHhhc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS------AYDKAAQYF 246 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~------s~~~a~~~~ 246 (438)
...+.+.+++++|++.. +++++|+.|+.+++.++ .+| ++||++...|. ++...++..
T Consensus 124 ~~~le~~lA~l~gae~a--------lvv~sg~aAi~l~l~~l------~~G---deVIvs~~e~v~~ggs~~i~~~~~~~ 186 (454)
T TIGR00474 124 YSHVEGLLCELTGAEDA--------LVVNNNAAAVLLALNTL------AKG---KEVIVSRGELVEIGGSFRIPDVMEQS 186 (454)
T ss_pred HHHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHh------CCc---CEEEECCChhhhhcchhhHHHHHHHc
Confidence 45677889999999753 57788999998888553 266 89999988763 234566778
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC--c--cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH--G--IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t--G--~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
|++++.++.+ ...|+++++++|+++|++|+.++++|++ | .+.|+++|+++||++|++++||++.|.+ .+.. .
T Consensus 187 G~~~~~v~~~--~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l-~~~~-~ 262 (454)
T TIGR00474 187 GAKLVEVGTT--NRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSL-VDLS-R 262 (454)
T ss_pred CCEEEEeCCC--CCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCccc-ccch-h
Confidence 9999998764 3468999999999999999999999874 6 5789999999999999999999875432 1110 0
Q ss_pred cCCC-CC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 323 LGYP-IP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 323 ~g~~-~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
.|.. .| ..+....|+|++++|+|||++||. .|+++.+++
T Consensus 263 ~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~ 303 (454)
T TIGR00474 263 YGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE 303 (454)
T ss_pred ccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHH
Confidence 1100 11 124556799999999999977774 788777754
No 167
>PRK04311 selenocysteine synthase; Provisional
Probab=99.76 E-value=1.4e-16 Score=162.43 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc------HHHHHhhcC
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA------YDKAAQYFN 247 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s------~~~a~~~~G 247 (438)
..+.+.+++++|.+. . +++++|+.|+.+++.++. +| ++||++...|++ +...++..|
T Consensus 130 ~~~e~~lA~l~Gae~------a--~vv~sgtaAl~l~l~~l~------~G---deVIvs~~e~~~~ggs~~i~~~~~~~G 192 (464)
T PRK04311 130 RALAALLCALTGAED------A--LVVNNNAAAVLLALNALA------AG---KEVIVSRGELVEIGGAFRIPDVMRQAG 192 (464)
T ss_pred HHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHhC------CC---CEEEEcchhhhhcCcchhhHHHHHHCC
Confidence 467778999999863 2 788889999998886642 66 899999876652 334667789
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCC--Cc--cccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFP--HG--IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~--tG--~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
++++.++.+ ...++++++++|+++|++|+.++++|+ +| ...|+++|+++||+||+++++|++.|.+ .++. ..
T Consensus 193 ~~l~~v~~~--~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l-~~~~-~~ 268 (464)
T PRK04311 193 ARLVEVGTT--NRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSL-VDLS-QY 268 (464)
T ss_pred cEEEEECCC--CCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCccc-ccch-hc
Confidence 999999764 346899999999999999999999997 34 5679999999999999999999975432 1111 11
Q ss_pred CCC-CCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC-CCchHHHHHHH
Q 013675 324 GYP-IPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR-PGGLIAGAWAA 400 (438)
Q Consensus 324 g~~-~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr-~~~~ia~~~aa 400 (438)
|.. .|. .+....|+|++++|+|||++|| .+|+++.+++ +.... ... +....-| .+..++++.++
T Consensus 269 gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~-li~~l-~~~----------~~~r~lr~dk~~l~~l~~~ 335 (464)
T PRK04311 269 GLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKE-LIARL-KKH----------PLKRALRVDKLTLAALEAT 335 (464)
T ss_pred cCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHH-HHHHH-hhc----------hhHHHHhcchHHHHHHHHH
Confidence 100 111 1233478999999999997777 4788777644 33211 000 0000011 23335566666
Q ss_pred HHHHc--------H---HHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 401 LMSLG--------Q---EGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 401 l~~~g--------~---~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
+..+- . .-+....++..++|+.+.+.|++.+
T Consensus 336 l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 336 LRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL 377 (464)
T ss_pred HHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence 65331 1 1133344667778888888887754
No 168
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.76 E-value=4e-17 Score=163.11 Aligned_cols=217 Identities=16% Similarity=0.113 Sum_probs=153.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH--
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA-- 243 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~-- 243 (438)
.|...++|+ .++++. ..+ . +++++|++|+..++.++. ++| |+|+++.+.|+.....+
T Consensus 50 ~p~~~~Le~----~lA~l~--~~~-----~--v~~~sG~~Ai~~~l~all-----~~G---d~Vl~~~~~y~~~~~~~~~ 108 (366)
T PRK07582 50 NPTWRALEA----ALGELE--GAE-----A--LVFPSGMAAITAVLRALL-----RPG---DTVVVPADGYYQVRALARE 108 (366)
T ss_pred CccHHHHHH----HHHHHc--CCC-----E--EEECCHHHHHHHHHHHhc-----CCC---CEEEEeCCCcHhHHHHHHH
Confidence 455555555 577776 232 2 778888999998887764 377 89999999987766544
Q ss_pred --hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhh
Q 013675 244 --QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 244 --~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~ 321 (438)
..+|++++.++.++++. .+.++|++|++++|+||+|.+.|+++|+++|+++|++++||++|+..
T Consensus 109 ~l~~~G~~v~~v~~~~~~~--------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~------ 174 (366)
T PRK07582 109 YLAPLGVTVREAPTAGMAE--------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP------ 174 (366)
T ss_pred HHhcCeEEEEEECCCChHH--------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc------
Confidence 45799999998764321 33468999999999999999999999999999999999999997521
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
.+. .+++ .|+|+++.++|||+.+|.| .|+++.+++++........ .+.| ..+. ...+|.
T Consensus 175 -~~~--~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~-~~~g----------~~~~--~~~a~l 235 (366)
T PRK07582 175 -LGQ--RPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR-LLAG----------AIPG--PFEAWL 235 (366)
T ss_pred -ccc--Cchh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH-HHhC----------CCCC--HHHHHH
Confidence 121 1333 4789999999999878777 5877766655433221111 1111 1111 225666
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+++ |.+-+..+.++..+++..+++.|++.|.++-+.|
T Consensus 236 ~~r--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~y 272 (366)
T PRK07582 236 AHR--SLGTLGLRFARQCANALAVAELLAGHPAVRGVRY 272 (366)
T ss_pred HHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 654 4456778888999999999999999998865443
No 169
>PRK07777 aminotransferase; Validated
Probab=99.75 E-value=2e-16 Score=159.60 Aligned_cols=243 Identities=16% Similarity=0.143 Sum_probs=168.5
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
..|...++..++++.+.+++.+.+|.+... ..++ ++|+|+++|+.+++.+.. .+| ++|+++.+.|..+.
T Consensus 55 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~~i--~~t~G~~~al~~~~~~~~-----~~g---d~vli~~p~y~~~~ 123 (387)
T PRK07777 55 NQYPPGPGIPELRAAIAAQRRRRYGLEYDP-DTEV--LVTVGATEAIAAAVLGLV-----EPG---DEVLLIEPYYDSYA 123 (387)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCcE--EEeCCcHHHHHHHHHHhc-----CCC---CEEEEeCCCchhhH
Confidence 445555777888888888888888875321 0026 899999999998888764 366 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 241 KAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
.+++..|.+++.+++++ ++.+|++++++++++++++|++++|+||||.+.+ +++|.++|+++++++++|++|+.
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~ 203 (387)
T PRK07777 124 AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEH 203 (387)
T ss_pred HHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchh
Confidence 99999999999999875 3579999999999989999999999999999865 88999999999999999999976
Q ss_pred hhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCC
Q 013675 315 FVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr 389 (438)
+... .... . ++. + ...+.+++..+++|.+. .+..+|+++.++ ++.+...... ..|.. +.
T Consensus 204 ~~~~--~~~~--~-~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~l~~~~~~~~~~~~~~~----------~~ 267 (387)
T PRK07777 204 LVFD--GARH--L-PLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPA-PLIAAVRAAKQYLTYVG----------GA 267 (387)
T ss_pred cccC--CCCc--c-cHhhCCCCcCcEEEEeechhhccCcCceeEEEecCH-HHHHHHHHHHhhcccCC----------CC
Confidence 5531 1100 1 111 1 12346788899999943 233478876554 3332211111 01110 11
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+ ...++..++. .+....++..+...++++++.+.|++. +++
T Consensus 268 ~--~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 308 (387)
T PRK07777 268 P--FQPAVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEA-GFE 308 (387)
T ss_pred H--HHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 1 1111222222 234556677788888999999999875 443
No 170
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.75 E-value=2.6e-17 Score=164.16 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=164.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDK 241 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~ 241 (438)
..++.+.++.+++++.+++++|.+++. ++ +++ ++||.++.+++.++.. + +.+++....|.+ +.+
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~~---~v--~f~~gs~T~a~~~~~~~l~~----~-----~~l~i~~G~~~~~~~~ 99 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDGY---EV--ILGNGGATAFWDAATFGLIE----K-----KSLHLSFGEFSSKFAK 99 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCCc---eE--EEECCchhHHHHHHHHhccc----c-----cccEEecCHHHHHHHH
Confidence 456778899999999999999996542 14 664 6699999999988741 1 234555555544 445
Q ss_pred HHhhc--CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 242 AAQYF--NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 242 a~~~~--Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
.+... +.+++.++.+++..++. .++++|++|+++|.+|.||.+.|+++| ++++|++++||++++.+..
T Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~-- 169 (361)
T TIGR01366 100 AVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL-- 169 (361)
T ss_pred HHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCC--
Confidence 55542 23777777765443333 457789999999999999999999988 5889999999999653333
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc--------ccccCCCc--cCCCCccCCC
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA--------VTEWSGGL--YVSPTVAGSR 389 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~--------~~~~~g~~--~~~~~~~gsr 389 (438)
++|.. .+|++++++||++.+|+|.++++++++.+.+..-.. ..+|.... .......++.
T Consensus 170 ---------~idv~--~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp 238 (361)
T TIGR01366 170 ---------PVDIA--ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTP 238 (361)
T ss_pred ---------CCCHH--HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCc
Confidence 35554 389999999999777778887777765442221000 00000000 0001222344
Q ss_pred CCchHHHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 390 PGGLIAGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+-..++++..+++++..+ |++.+.++..+++++++++|.+++++++
T Consensus 239 ~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~ 285 (361)
T TIGR01366 239 AIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATP 285 (361)
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 444566888999999877 6999999999999999999999876543
No 171
>PRK15029 arginine decarboxylase; Provisional
Probab=99.75 E-value=6.8e-17 Score=171.60 Aligned_cols=231 Identities=15% Similarity=0.120 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...+..+..|++||++..- .+|+|+|.+|..++.++. ++| +.|+++..+|-|+..++.+.|++++
T Consensus 206 ~I~eAq~~aA~~fgA~~t~-------FlvNGST~gn~a~i~a~~-----~~g---d~Vlv~RN~HKSv~~al~L~ga~Pv 270 (755)
T PRK15029 206 AFGESEKYAARVFGADRSW-------SVVVGTSGSNRTIMQACM-----TDN---DVVVVDRNCHKSIEQGLILTGAKPV 270 (755)
T ss_pred HHHHHHHHHHHHhCCCcEE-------EEeCChhHHHHHHHHHhc-----CCC---CEEEeecccHHHHHHHHHHcCCeEE
Confidence 3455666899999998763 789999999999888877 378 9999999999999999999999999
Q ss_pred EeeCCC-----CCccC-----HHHHHHhhccC--cE--------EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 252 RVPVDK-----EFRAD-----VKAIKKYINRN--TV--------LIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 252 ~v~~~~-----~~~~d-----~~~Le~~I~~~--t~--------~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+++... .+.++ ++.++++|.++ ++ ++++++||+ .|.+.|+++|+++|++++++++||+|
T Consensus 271 yl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 271 YMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred EecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECc
Confidence 997542 23355 99999999653 33 899999988 89999999999999999999999999
Q ss_pred ccchhhhhhhhcCCCCCC-Ccc-----CCCCcc-EEEeCCCCCCCCCCCcEEEEEeccc--ccccchhcccccCCCccCC
Q 013675 312 LGGFVLPFAKKLGYPIPP-FDF-----SVQGVT-SISVDVHKYGLAPKGTSVVLYRNRE--IRKHQFVAVTEWSGGLYVS 382 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~-~~~-----~~~gvd-sis~s~hK~~~~p~g~g~l~~r~~~--~~~~~~~~~~~~~g~~~~~ 382 (438)
||+... |... .|. ... ...|+| .++-|+||.+.+-..++++.++++. +....+.....
T Consensus 350 hGah~~-F~~~----~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~-------- 416 (755)
T PRK15029 350 WYGYAR-FNPI----YADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYM-------- 416 (755)
T ss_pred cccccc-cCcc----ccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHH--------
Confidence 987542 3221 222 111 126888 8899999999888899999997652 22111111000
Q ss_pred CCccCCCCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 383 PTVAGSRPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 383 ~~~~gsr~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
.....|.+..+++++-.+.+++-. .| .+..++..+.+..+++.|.++++
T Consensus 417 ~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~ 466 (755)
T PRK15029 417 MHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 011123444567788888776644 34 56678888889999999988765
No 172
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=145.02 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=178.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
-|.+..+.+ .+++++|+|.. -+|.|+.+|-..++.+++. +| |-|++...+|++..-+++.
T Consensus 60 kPpI~~F~~----dlaeFlg~D~~--------R~t~GARe~KfavMhal~~-----~g---d~vV~D~~aHYttyvAAEr 119 (382)
T COG1103 60 KPPIKDFLE----DLAEFLGMDEV--------RVTAGAREAKFAVMHALCK-----EG---DWVVVDSLAHYTTYVAAER 119 (382)
T ss_pred CCcHHHHHH----HHHHHhCCcee--------eecccchhhHHHHHHHhcc-----CC---CEEEEcCcchHHHHHHHHh
Confidence 344444443 49999999864 6999999999999999873 78 9999999999999999999
Q ss_pred cCcEEEEeeCC--CCCccCHHHHHHhhcc-------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 246 FNIKLWRVPVD--KEFRADVKAIKKYINR-------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 246 ~Gi~v~~v~~~--~~~~~d~~~Le~~I~~-------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
.|+++..||-. +++.++++...+.|++ .+.+.+++++....|.+.|.+.++++|++||+++.+.+||.-+-
T Consensus 120 agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Gr 199 (382)
T COG1103 120 AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGR 199 (382)
T ss_pred cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecc
Confidence 99999999965 4899999999888853 37899999999999999999999999999999999999997554
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc-cccCCCccCCCCccCCCCCchHH
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV-TEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
+ |...+..|+|+++.|+||.+-+...+|++.++.+ .....+..+ ..|+..- . ..+-.+-.|+.++
T Consensus 200 m-----------pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE-~ae~V~r~Sg~~~~~KE-v-ellGCT~rGapiv 265 (382)
T COG1103 200 M-----------PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEE-WAEIVLRRSGRAFPKKE-V-ELLGCTVRGAPIV 265 (382)
T ss_pred c-----------cccccccCCCEEEecCccchhccCCeeEEeehhH-HHHHHHhhcccccccce-e-eeecccccCchHH
Confidence 4 4667888999999999999877777999888753 222221111 0111100 0 0112345566677
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+.+++-+. ..-..+.+.-.+.++++.++|+++.|++
T Consensus 266 TlmASfP~V--~eRVkrWdeEv~kaR~fv~elEkigg~~ 302 (382)
T COG1103 266 TLMASFPHV--VERVKRWDEEVEKARWFVAELEKIGGVK 302 (382)
T ss_pred HHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777777554 2224556667789999999999987664
No 173
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.75 E-value=7.9e-17 Score=163.06 Aligned_cols=243 Identities=16% Similarity=0.103 Sum_probs=168.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH-----HhcC-----------------
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR-----NKRG----------------- 223 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~-----~~~G----------------- 223 (438)
...+.++|..+.+...++||++..+ +-..+|+.||+.+..++....- .++|
T Consensus 90 ~~~~d~ie~l~~~ra~~lf~a~~an-------vqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~ 162 (493)
T PRK13580 90 CQNVDTVEWEAAEHAKELFGAEHAY-------VQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRA 162 (493)
T ss_pred CchHHHHHHHHHHHHHHHhCCCccc-------ccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhc
Confidence 4557788999999999999999876 6888999999999999874200 0011
Q ss_pred -CCCCeEEecCCC---cCcHHHHHhhcC--cEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHH
Q 013675 224 -ITRPEMIIPVSA---HSAYDKAAQYFN--IKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELG 296 (438)
Q Consensus 224 -~~~~~Viv~~~~---h~s~~~a~~~~G--i~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~ 296 (438)
+..|+|+.-+.. |.+........| .+.+..++++ ++.+|.+++++.+.+++..|++++.++. |...|+++|+
T Consensus 163 ~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~ 241 (493)
T PRK13580 163 ELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLR 241 (493)
T ss_pred cCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHH
Confidence 012777654333 433222223333 4666777775 7899999999999999888888888886 5577999999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhccccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW 375 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~ 375 (438)
++|+++|++++||++++.++++ .+. .+ .++ ...++|++++++||+++||.| |+++++++ +......
T Consensus 242 eia~~~gA~L~VD~AH~~Glig----g~~-~~~~~~-~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~~~L~~----- 308 (493)
T PRK13580 242 EIADEVGAVLMVDMAHFAGLVA----GKV-FTGDED-PVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YADAVDK----- 308 (493)
T ss_pred HHHHHcCCEEEEECchhhceec----ccc-chhhcC-CCCCCcEEEeCChhhccCCCe-EEEEecHH-HHHHHhh-----
Confidence 9999999999999999877764 110 10 011 124799999999999889986 88777643 3222110
Q ss_pred CCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 376 SGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 376 ~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..+.+.|+..-..+++...++..+....+.+..++..+++++|++.|.+. |+.+
T Consensus 309 -----a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~v 362 (493)
T PRK13580 309 -----GCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARL 362 (493)
T ss_pred -----CCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 01223333333345566666666644456778999999999999999876 5543
No 174
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.75 E-value=2.1e-16 Score=159.92 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=140.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|....+..++.+.+.+++.+.+|.+ +++ ++ ++|+|+++++.++++++.+ +|.+.++|+++.+.|+
T Consensus 59 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~---~i--~it~G~~~al~~~~~~l~~-----~~~~gd~vlv~~P~y~ 128 (396)
T PRK09147 59 ASYPTTAGLPALREAIAAWLERRYGLPALDPAT---QV--LPVNGSREALFAFAQTVID-----RDGPGPLVVCPNPFYQ 128 (396)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccc---eE--EECCChHHHHHHHHHHHcC-----CCCCCCEEEEcCCCcc
Confidence 445555666778888888888887854 331 26 8899999999999998763 5111288999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~ 312 (438)
.+..+++..|++++.||+++ ++.+|++++++.+.++++++++++|+||||.+.+ +++|.++|++|++++++|.+|
T Consensus 129 ~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y 208 (396)
T PRK09147 129 IYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY 208 (396)
T ss_pred chHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc
Confidence 99999999999999999974 4689999999988888999999999999999975 678888899999999999999
Q ss_pred cchhhhhhhhcCCCCCCC------ccCCCCccEEEeCCCCC-CCCCCCcEEEEEec
Q 013675 313 GGFVLPFAKKLGYPIPPF------DFSVQGVTSISVDVHKY-GLAPKGTSVVLYRN 361 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~------~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~ 361 (438)
+.+... ... ...+.+ +.....-.++..++.|. +..+..+|+++..+
T Consensus 209 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~ 261 (396)
T PRK09147 209 SEIYFD--EAA-PPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA 261 (396)
T ss_pred cccccC--CCC-CCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCH
Confidence 876431 000 000000 00011224777889994 56667799976543
No 175
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.75 E-value=2.9e-16 Score=159.13 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=163.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
|...++..++.+.+.+++.+. + .++++ + ++|+|+++++.+++.++.. +| ++|+++.++|..+.
T Consensus 69 Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~----i--~~t~G~~~al~~~~~~l~~-----~g---d~v~i~~P~y~~~~ 133 (401)
T TIGR01264 69 YAPTVGALSAREAIASYYHNP-DGPIEADD----V--VLCSGCSHAIEMCIAALAN-----AG---QNILVPRPGFPLYE 133 (401)
T ss_pred CCCCCCCHHHHHHHHHHHhhc-CCCCCHHH----E--EECcChHHHHHHHHHHhCC-----CC---CEEEEeCCCChhHH
Confidence 444556666666655555442 2 34443 6 8999999999999988763 66 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
..++..|++++.++++. ++.+|+++++++++++++++++++|+||||.+.+ +++|+++|+++|+++++|++|..+
T Consensus 134 ~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~ 213 (401)
T TIGR01264 134 TLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDM 213 (401)
T ss_pred HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhh
Confidence 99999999999998864 5789999999999888999999999999999965 788999999999999999999866
Q ss_pred hhhhhhhcCCCCCCCccCCCC-ccEEEeCCCCC-CCCCCCcEEEEEeccc-----ccccchhcc-cccCCCccCCCCccC
Q 013675 316 VLPFAKKLGYPIPPFDFSVQG-VTSISVDVHKY-GLAPKGTSVVLYRNRE-----IRKHQFVAV-TEWSGGLYVSPTVAG 387 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~g-vdsis~s~hK~-~~~p~g~g~l~~r~~~-----~~~~~~~~~-~~~~g~~~~~~~~~g 387 (438)
... +...+++...... -.+++.++.|. +..+..+|+++..++. ......... ..|..
T Consensus 214 ~~~-----~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~---------- 278 (401)
T TIGR01264 214 VFS-----GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGP---------- 278 (401)
T ss_pred ccC-----CcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCC----------
Confidence 531 0001111111111 13677788996 6666779998876421 111110000 01100
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+.....++..++.....+.+++..++..+..+++.+.|+++|++.
T Consensus 279 --~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~ 323 (401)
T TIGR01264 279 --CTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR 323 (401)
T ss_pred --CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 000111222233221235566777888888889999998887754
No 176
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.75 E-value=4.4e-16 Score=156.89 Aligned_cols=240 Identities=17% Similarity=0.142 Sum_probs=166.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
..|....+..++.+.+.+++.+.+|. ++++ + ++|+|+++|+.+++.++.. +| ++|+++.+.|+.
T Consensus 60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i--~it~G~~~al~~~~~~~~~-----~g---d~vlv~~p~y~~ 125 (384)
T PRK06348 60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNE----I--MATVGACHGMYLALQSILD-----PG---DEVIIHEPYFTP 125 (384)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhh----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEeCCCCcc
Confidence 44555566667888888888777665 4444 6 8999999999999998763 67 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
+..+++..|.+++.+|+++ ++.+|++++++++++++++|++++|+||||.+.+ +++|.++|+++|+++++|.+|+
T Consensus 126 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~ 205 (384)
T PRK06348 126 YKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYD 205 (384)
T ss_pred hHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccc
Confidence 9999999999999998743 5679999999999888999999999999999976 6788889999999999999998
Q ss_pred chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCCCC
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gsr~ 390 (438)
.+... .. ..+...++. ..+-.++..+..|... .+..+|+++..+ ++........ ..|.. +
T Consensus 206 ~~~~~--~~-~~~~~~~~~-~~~~vi~~~SfSK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~~~~----------~-- 268 (384)
T PRK06348 206 GFSFY--ED-FVPMATLAG-MPERTITFGSFSKDFAMTGWRIGYVIAPD-YIIETAKIINEGICFSA----------P-- 268 (384)
T ss_pred cceeC--CC-ccchhhcCC-CcCcEEEEecchhccCCccccceeeecCH-HHHHHHHHHHHhccCCC----------C--
Confidence 76531 00 000111211 1223467778899853 456789977753 3332211111 11111 1
Q ss_pred CchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 391 GGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 391 ~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....++...+ ..+..++..+...+.++++.+.|+++++++
T Consensus 269 ---~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~ 311 (384)
T PRK06348 269 ---TISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLS 311 (384)
T ss_pred ---HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11222222222 233355666667777888889988876654
No 177
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.75 E-value=7.4e-17 Score=160.91 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.++++++.++++ + ++|+|+++++..++.++. +| + +++..+.+..+...++..|++++.+
T Consensus 58 ~~lr~~ia~~~~~~~~~----i--~it~Ga~~~l~~~~~~l~------~g---~-viv~~P~y~~~~~~~~~~g~~~~~v 121 (356)
T PRK08056 58 RHLHQALARHHQVPASW----I--LAGNGETESIFAVVSGLK------PR---R-AMIVTPGFAEYRRALQQVGCEIRRY 121 (356)
T ss_pred HHHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHHHhC------CC---C-EEEeCCCcHHHHHHHHHcCCeEEEE
Confidence 46777888889998776 6 899999999998887652 44 4 6777788888999999999999999
Q ss_pred eCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 254 PVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 254 ~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
|+++ ++.+| +++++.+++++++|++++|+||||.+.+ +++|+++|+++++++++|++|..+.. +.... ++
T Consensus 122 ~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~---~~~~~-~~ 196 (356)
T PRK08056 122 SLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIP---DETGF-IP 196 (356)
T ss_pred ecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCC---cchHH-HH
Confidence 9874 35566 4566677788999999999999999988 78899999999999999999976542 11000 11
Q ss_pred CCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cH
Q 013675 329 PFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQ 406 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~ 406 (438)
.+. ....++++.|++|+.. ....+|+++..+++...........|.. ...+..++...+ +.
T Consensus 197 ~~~--~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~---------------~~~~~~~a~~~l~~~ 259 (356)
T PRK08056 197 QLA--DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSI---------------NAFAALAGEVILQDR 259 (356)
T ss_pred Hhc--cCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCch---------------hHHHHHHHHHHhCCH
Confidence 111 1234688899999944 4456899877554443322111111110 011333333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
...++..++..+.++++.+.|++++++.
T Consensus 260 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 287 (356)
T PRK08056 260 AYQQATWQWLAEEGARFYQALCALPLLT 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 4455666778888999999998887754
No 178
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.75 E-value=1.1e-16 Score=159.76 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.+++++|.+.++ ++ ++|+|+++++.+++.++.+ +| ++|+++.++|..+..+++..|++++.+
T Consensus 66 ~~lr~~ia~~~~~~~~~---~I--~~t~G~~~~i~~~~~~~~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~~~~i 132 (356)
T PRK04870 66 AALKAALRAAMGVPAGA---DV--LLGNGSDELIQLLALACAK-----PG---ATVLAPEPGFVMYRMSAKLAGLEFVGV 132 (356)
T ss_pred HHHHHHHHHHhCcCCCC---cE--EEcCCHHHHHHHHHHHhcC-----CC---CEEEECCCCHHHHHHHHHHcCCEEEEe
Confidence 35666788888886542 26 8999999999998887753 67 899999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 254 PVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
|+++++.+|++++++++. .+++++++++|+||||.+.+.+++.++++..++++++|++|..+.. . .. .+.++
T Consensus 133 ~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~---~--~~-~~~~~- 205 (356)
T PRK04870 133 PLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG---D--SW-LPRLA- 205 (356)
T ss_pred cCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC---c--ch-HHHHh-
Confidence 998888999999999996 4789999999999999999999888888877899999999975431 0 00 11111
Q ss_pred CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHHHHH
Q 013675 333 SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEGYLE 411 (438)
Q Consensus 333 ~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g~~~ 411 (438)
...-.++..+.+|++..+..+|+++.. +++.+........|.. . ..++.++...+ ..+.+++
T Consensus 206 -~~~~vi~~~S~SK~~~~GlRiG~~i~~-~~~i~~~~~~~~~~~~-------------~--~~~q~~a~~~l~~~~~~~~ 268 (356)
T PRK04870 206 -RFPNLLVMRTVSKLGLAGLRLGYLAGH-PAWIAELDKVRPPYNV-------------N--VLTQATALFALEHVDVLDA 268 (356)
T ss_pred -hCCCEEEEecchhhhhHHHhhhhhhCC-HHHHHHHHHccCCCcC-------------C--HHHHHHHHHHHhCHHHHHH
Confidence 111246778889975555568987664 3333322111111211 0 11222222222 1234677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccc
Q 013675 412 NTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..++..+.++++.+.|++++++++
T Consensus 269 ~~~~~~~~~~~l~~~L~~~~~~~~ 292 (356)
T PRK04870 269 QAAQLRAERTRLAAALAALPGVTV 292 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEE
Confidence 788888999999999998877653
No 179
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.75 E-value=2.9e-16 Score=159.21 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=167.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..+|....+..++.+++.+++.+.+|.+ +++ + ++|+|+++|+..++.+.. .+| +.|+++.+.|+
T Consensus 63 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~----i--~~t~G~~~al~~~~~~~~-----~~g---d~vl~~~p~y~ 128 (402)
T PRK06107 63 ETKYTLVNGTPALRKAIIAKLERRNGLHYADNE----I--TVGGGAKQAIFLALMATL-----EAG---DEVIIPAPYWV 128 (402)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh----E--EEeCCHHHHHHHHHHHhc-----CCC---CEEEEecCCCc
Confidence 3445555677788888999999888874 333 6 899999999999988754 367 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc-CCeEEEecc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH-GTCLHVDLC 311 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~-~i~lhVD~a 311 (438)
.+..++...|.+++.+++++ ++.+|+++++++++++++++++++|+||||.+.+ +++|+++|+++ ++++++|.+
T Consensus 129 ~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~ 208 (402)
T PRK06107 129 SYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDI 208 (402)
T ss_pred CHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehh
Confidence 99888888899888888863 4679999999999989999999999999998876 56778889998 999999999
Q ss_pred ccchhhhhhhhcCCCCCCCc---cCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCcc
Q 013675 312 LGGFVLPFAKKLGYPIPPFD---FSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVA 386 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~---~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 386 (438)
|+.+.. + +.+.|.+. ....+-.++..+.+|.+ +.+ .+|+++.. +++..........+.
T Consensus 209 y~~l~~---~--~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~-~~~~~~~~~~~~~~~---------- 271 (402)
T PRK06107 209 YDHIRF---D--DEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGP-ADLIAAINKLQSQSS---------- 271 (402)
T ss_pred cccccc---C--CCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecC-HHHHHHHHHHHHhcc----------
Confidence 975432 1 10011111 11112346666779994 434 47987654 444332111111000
Q ss_pred CCCCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 387 GSRPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.... ...++++...+ +....++..+...+..+.+.+.|++++|+.+
T Consensus 272 -~~~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~ 319 (402)
T PRK06107 272 -SCPS--SISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSC 319 (402)
T ss_pred -cCCC--hHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 0111 11334444334 3455667777788888889999988766553
No 180
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.75 E-value=1.7e-16 Score=161.21 Aligned_cols=234 Identities=18% Similarity=0.141 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQ 244 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~ 244 (438)
.|...++|+-+.+.+++++|.+... +++++|+.|+..++.++. ++| |+|+++...|.+ +...++
T Consensus 69 ~~~~~~lE~~~~~~la~l~g~~~al-------v~~~SG~~A~~~~l~al~-----~~G---D~Vl~~~~~~~~~~~~g~~ 133 (416)
T PRK13034 69 CEFVDEVEALAIERAKQLFGCDYAN-------VQPHSGSQANGAVYLALL-----KPG---DTILGMSLSHGGHLTHGAK 133 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCceE-------EecCCcHHHHHHHHHHhc-----CCC---CEEEEcCccceeeeecCCc
Confidence 3667778877888999999987531 567899999999999875 378 999999999987 222222
Q ss_pred h--cCcEE--EEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 245 Y--FNIKL--WRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 245 ~--~Gi~v--~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
. .+... +.+++++ ++.+|++++++.+.. ++++|+++.+. +|..-|+++|.++|+++|+++++|++++.+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~ 211 (416)
T PRK13034 134 VSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVA 211 (416)
T ss_pred ceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcc
Confidence 1 12222 3455544 677999999999854 68888775543 688889999999999999999999998765542
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
.|. .. ....++|++++++||++.+|.| |+++.+++.+....... -+.+ +.+...-..++++.
T Consensus 212 ----~g~--~~--~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~aa~~ 273 (416)
T PRK13034 212 ----AGE--HP--NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSA--VFPG-------LQGGPLMHVIAAKA 273 (416)
T ss_pred ----cCC--CC--CCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhh--cCCc-------ccCCccHHHHHHHH
Confidence 121 11 1123589999999999878887 66666655433221110 0111 11111112233444
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.++...-..+..+..++..+++++|++.|++. |+++
T Consensus 274 ~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~ 309 (416)
T PRK13034 274 VAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDL 309 (416)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 34433322344566789999999999999877 6654
No 181
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.74 E-value=3.1e-16 Score=149.16 Aligned_cols=246 Identities=18% Similarity=0.219 Sum_probs=172.0
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCC--CCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKA--SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~--~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
|..+.|.....++ +|++++-+.+. ++.+| ++|+|.++|+.+++.++.+ +| .+|++|.+.++-+.
T Consensus 99 Yaps~G~~~AR~A----VAeYl~~~l~~kl~a~DV--~ltsGC~qAIe~~i~~LA~-----p~---aNILlPrPGfp~Y~ 164 (447)
T KOG0259|consen 99 YAPSVGILPARRA----VAEYLNRDLPNKLTADDV--VLTSGCSQAIELAISSLAN-----PG---ANILLPRPGFPLYD 164 (447)
T ss_pred cCCccccHHHHHH----HHHHhhcCCCCccCcCce--EEeccchHHHHHHHHHhcC-----CC---CceecCCCCCchHH
Confidence 5556676655555 44443332211 13347 9999999999999999874 67 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 241 KAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.-+.+.|+++++.++-+ +|++|++.+|.++++||.++++.+|+||+|.+.. +++|+++|+++++.++.|++|+.+
T Consensus 165 ~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~ 244 (447)
T KOG0259|consen 165 TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHT 244 (447)
T ss_pred HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhccee
Confidence 99999999999998753 8999999999999999999999999999999965 899999999999999999999887
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCC-CCCCCCC-CCcEEEEEeccccc-ccchh--cccccCCCccCCCCccCCCC
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDV-HKYGLAP-KGTSVVLYRNREIR-KHQFV--AVTEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~-hK~~~~p-~g~g~l~~r~~~~~-~~~~~--~~~~~~g~~~~~~~~~gsr~ 390 (438)
+.. .+ .+ +| +..-..-|-++++++ .|-...| ...|++.+.|+.-. +..-. ...++.+-. ..|
T Consensus 245 vfg--~~-pf-vp-mg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~--------~~p 311 (447)
T KOG0259|consen 245 VFG--DK-PF-VP-MGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDII--------PGP 311 (447)
T ss_pred ecC--CC-Cc-cc-hhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhcc--------CCc
Confidence 752 11 11 11 111122245566553 4543555 56999999876421 11000 000000000 111
Q ss_pred CchH-HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 391 GGLI-AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 391 ~~~i-a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+.+ +++-.-|..--++-+.....-...+++...+.|+++|+++.
T Consensus 312 ~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~c 357 (447)
T KOG0259|consen 312 ATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTC 357 (447)
T ss_pred cHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCccc
Confidence 1222 23333444444567888888899999999999999999884
No 182
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.74 E-value=5.6e-16 Score=156.78 Aligned_cols=240 Identities=20% Similarity=0.239 Sum_probs=161.4
Q ss_pred cccchhHHHHHHHHHHHHHHH-hCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAAL-LGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l-~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~ 241 (438)
|....+..++.+.+.+++... .+.++++ + ++|+|+++++.+++.++. .+| ++|+++.+.|..+..
T Consensus 62 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vl~~~p~y~~~~~ 127 (397)
T PRK07568 62 YSHSQGIPELREAFAKYYKKWGIDVEPDE----I--LITNGGSEAILFAMMAIC-----DPG---DEILVPEPFYANYNG 127 (397)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCcce----E--EEcCChHHHHHHHHHHhc-----CCC---CEEEEecCCCccHHH
Confidence 433455556666555555421 1344554 6 899999999999988764 367 899999999999888
Q ss_pred HHhhcCcEEEEeeCCC-C-Cc-cCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 242 AAQYFNIKLWRVPVDK-E-FR-ADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~-~-~~-~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.++..|++++.++++. + +. .|++++++++++++++|++++|+||||.+.+ +++|+++|+++|+++++|++|+.+
T Consensus 128 ~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 128 FATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREF 207 (397)
T ss_pred HHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence 8899999999999863 3 33 3689999999999999999999999999875 788999999999999999999876
Q ss_pred hhhhhhhcCCCCCC-CccCC-CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcc-cccCCCccCCCCccCCCCC
Q 013675 316 VLPFAKKLGYPIPP-FDFSV-QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAV-TEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 316 ~~pf~~~~g~~~p~-~~~~~-~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~gsr~~ 391 (438)
... +...+. ..+.. ..-.++..|.+|.+. .+..+|+++..++++........ ..|.. +.
T Consensus 208 ~~~-----~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~----------s~-- 270 (397)
T PRK07568 208 VYD-----GLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSP----------PT-- 270 (397)
T ss_pred ccC-----CCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCC----------Cc--
Confidence 431 100111 11111 122366778899843 34568998876555543221111 01100 11
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
....++-.++. .+.+.+++..+...+.++.+.+.|++++++.
T Consensus 271 ~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 312 (397)
T PRK07568 271 LEQIGAAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVV 312 (397)
T ss_pred HHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11112222232 1345567777788889999999998877654
No 183
>PRK09105 putative aminotransferase; Provisional
Probab=99.74 E-value=1.1e-16 Score=160.34 Aligned_cols=220 Identities=20% Similarity=0.130 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++++.+++.+|.++++ | ++|+|+++++.+++.++.+ +| ++|++++++|+.+...++.+|++++.
T Consensus 80 ~~~Lr~aia~~~~v~~e~----I--~it~Gs~~ai~~~~~~l~~-----~g---d~Vli~~P~y~~~~~~~~~~g~~~~~ 145 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADH----V--MAYAGSSEPLNYAVLAFTS-----PT---AGLVTADPTYEAGWRAADAQGAPVAK 145 (370)
T ss_pred HHHHHHHHHHHhCcChhh----E--EEcCChHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHHHHHHHcCCeEEE
Confidence 345666788889998876 7 8999999999999988763 67 89999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+|.++++.+|++++++. .++++++++++|+||||.+.+.++|.++++. +++++++|++|..+.- . .+..
T Consensus 146 v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~----~----~s~~ 216 (370)
T PRK09105 146 VPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSD----A----PSVV 216 (370)
T ss_pred ecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhcc----C----cchH
Confidence 99988889999999987 5678999999999999999998888888764 4899999999954321 0 0011
Q ss_pred ccCCCCccEE-EeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-H
Q 013675 331 DFSVQGVTSI-SVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q 406 (438)
Q Consensus 331 ~~~~~gvdsi-s~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~ 406 (438)
+......+++ ..++.|. ++.+| +|+++.. +++.+..... .+ .... ..++.++...+. .
T Consensus 217 ~~~~~~~~vi~~~SfSK~-~g~~GlRiG~~v~~-~~~i~~l~~~--~~------------~~~~--~~~~~aa~~~L~~~ 278 (370)
T PRK09105 217 DLVAQRKDLIVLRTFSKL-YGMAGMRLGLAAAR-PDLLAKLARF--GH------------NPLP--VPAAAAGLASLRDP 278 (370)
T ss_pred HHHhhCCCEEEEecccHh-hcCCccceeeeecC-HHHHHHHHhc--CC------------CCcC--HHHHHHHHHHHhCH
Confidence 2211223444 4567788 55555 9987764 3333321111 00 0011 123344444343 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+.+++..++..++.+++.+.|++. +++
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 305 (370)
T PRK09105 279 KLVPQRRAENAAVREDTIAWLKKK-GYK 305 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence 445666678888889999999875 554
No 184
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.74 E-value=4.6e-17 Score=162.07 Aligned_cols=225 Identities=18% Similarity=0.181 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++++++.+|+++++ | ++|+|+++++.++++++.. +| .++|+++.++|+.+...++..|++++.+
T Consensus 60 ~~l~~~~a~~~g~~~~~----I--~~~~Gs~e~i~~~~~~~~~-----~g--~~~vli~~P~y~~y~~~~~~~G~~~~~v 126 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQ----V--LVSRGADEGIELLIRAFCE-----PG--KDAILYCPPTYGMYSVSAETIGVEIRTV 126 (351)
T ss_pred HHHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC--CCEEEEcCCCHHHHHHHHHHcCCEEEEe
Confidence 46777899999998876 7 8999999999999988652 32 2689999999999999999999999999
Q ss_pred eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
|+++++.+|++++++++ ++|++|++++||||||.+.+.+++.++++.. ++++++|++|..|... .. ..+
T Consensus 127 ~~~~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~--~s------~~~ 197 (351)
T PRK01688 127 PTLDNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQ--AS------LAG 197 (351)
T ss_pred ecCCCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCC--CC------hHH
Confidence 99888999999999988 5899999999999999999887777776542 6889999999765410 00 001
Q ss_pred c-CCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 332 F-SVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 332 ~-~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
. ....--++.-+++|. ++.. .+|+++.+ +++.+........|..+ .. ...++-++|..-+.+.
T Consensus 198 ~~~~~~n~iv~rSfSK~-~glaGlRiGy~i~~-~~~i~~l~~~~~~~~v~----------~~--~~~~a~~~L~~~~~~~ 263 (351)
T PRK01688 198 WLAEYPHLVILRTLSKA-FALAGLRCGFTLAN-EEVINLLLKVIAPYPLS----------TP--VADIAAQALSPQGIAA 263 (351)
T ss_pred HHhhCCCEEEEecchHh-hcCHHHHHhHHhCC-HHHHHHHHhccCCCCCC----------HH--HHHHHHHHHhcchHHH
Confidence 0 111124677789997 4544 46887654 44433222222222211 00 0111112332212345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+++..+...+.++++.+.|+++++++
T Consensus 264 ~~~~~~~~~~~r~~l~~~L~~~~~~~ 289 (351)
T PRK01688 264 MRERVAEINANRQWLIAALKEIPCVE 289 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66777788888899999999887764
No 185
>PRK08068 transaminase; Reviewed
Probab=99.74 E-value=7.2e-16 Score=155.65 Aligned_cols=242 Identities=14% Similarity=0.118 Sum_probs=165.8
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
.|...++..++.+++.+++.+.+|. +++ + + ++|+|+++++..++.++. .+| ++|+++.++|+.
T Consensus 65 ~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~----i--~it~G~~~~l~~~~~~~~-----~~g---d~vlv~~P~y~~ 130 (389)
T PRK08068 65 KYSPFRGYPFLKEAAADFYKREYGVTLDPETE----V--AILFGGKAGLVELPQCLM-----NPG---DTILVPDPGYPD 130 (389)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----E--EEcCCcHHHHHHHHHHhC-----CCC---CEEEEcCCCCcc
Confidence 3444566778888888888776774 444 3 6 899999999999888765 367 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~g 313 (438)
+..+++..|++++.+|+++ ++.+|++++++++++++++|++++|+||||.+.+. ++|.++|+++++++++|.+|+
T Consensus 131 ~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~ 210 (389)
T PRK08068 131 YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYG 210 (389)
T ss_pred hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhh
Confidence 9999999999999999975 56789999999998889999999999999999885 578888999999999999997
Q ss_pred chhhhhhhhcCCCCCCCcc-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 314 GFVLPFAKKLGYPIPPFDF-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
.+.. +.. ...+-... ......++..++.|.+ .++..+|+++. ++++..........|.. +-+.
T Consensus 211 ~~~~---~~~-~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~----------~~~~ 275 (389)
T PRK08068 211 AIGF---DGQ-KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHLFV----------SLFG 275 (389)
T ss_pred hhcc---CCC-CCcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHHHHhhccC----------CCCh
Confidence 5432 100 00110111 1122346777889994 24455899765 44444322111111111 1111
Q ss_pred chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
....++..++. -+.+.+++..++..+..+++.+.|+++ |+.
T Consensus 276 ~~q~~~~~~l~-~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~ 316 (389)
T PRK08068 276 AIQDAAIEALL-SDQSCVAELVARYESRRNAFISACREI-GWE 316 (389)
T ss_pred HHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 11111222221 134556777888888888899998876 443
No 186
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.74 E-value=4e-16 Score=157.88 Aligned_cols=243 Identities=16% Similarity=0.078 Sum_probs=159.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
.+|..+++..++|++ +++++|.+. + ++|+|||+|+.++++++. ++| |+| ++.+.+.++.
T Consensus 47 ~~Y~~~~g~~~Leea----ia~~~g~~~------v--v~t~~Gt~Al~la~~al~-----~pG---D~V-~~~~~f~~~~ 105 (431)
T cd00617 47 EAYAGSKSFYDLEDA----VQDLFGFKH------I--IPTHQGRGAENILFSILL-----KPG---RTV-PSNMHFDTTR 105 (431)
T ss_pred CccCCCCCHHHHHHH----HHHHHCCCe------E--EEcCCHHHHHHHHHHHhC-----CCC---CEE-ccCCcccchH
Confidence 346778888877775 677777753 4 899999999999998875 377 766 5777777888
Q ss_pred HHHhhcCcEEEEeeCCC----------CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccccC---HHHHHHHHHHc
Q 013675 241 KAAQYFNIKLWRVPVDK----------EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GIIDP---IQELGELALSH 302 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~----------~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~idd---i~~I~~la~~~ 302 (438)
..+.+.|.+++.+++++ .+.+|+++|+++|+++ +++|+++.|+|++ |.+-+ +++|+++|++|
T Consensus 106 ~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~ 185 (431)
T cd00617 106 GHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKY 185 (431)
T ss_pred HHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc
Confidence 88999999999999974 2449999999999865 7899999999998 88764 66889999999
Q ss_pred CCeEEEeccccchhhhhhhh--cCCCCCCCcc----CCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675 303 GTCLHVDLCLGGFVLPFAKK--LGYPIPPFDF----SVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS 376 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~--~g~~~p~~~~----~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~ 376 (438)
|+++|.|+|....-..|.+. .|+.-.++.. -....|++++++||.+.+|.| |+++.+++++.+..........
T Consensus 186 gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~~~~ 264 (431)
T cd00617 186 GIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVVLYE 264 (431)
T ss_pred CCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhccccC
Confidence 99999999954321112110 1110001100 012469999999999878774 7778877655443211100011
Q ss_pred CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+ ....|.-.+..++++..+|....+ .+..++..+.++++.+.|++. |+.
T Consensus 265 ~-----~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~-G~~ 313 (431)
T cd00617 265 G-----FVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEA-GVP 313 (431)
T ss_pred C-----ccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHC-CCC
Confidence 1 111121122223344334432111 234555555678898999876 543
No 187
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.74 E-value=6.3e-16 Score=156.88 Aligned_cols=235 Identities=16% Similarity=0.187 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675 167 QSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~ 243 (438)
++..++.+.+.+++.+.+|.+ +++ +| ++|+|+++++..++.++.+ +| ++|+++.+.|+.+...+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~---~I--~it~Gs~~al~~~~~~~~~-----~g---d~Vlv~~P~y~~~~~~~ 147 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVT---EV--IHSIGSKPALAMLPSCFIN-----PG---DVTLMTVPGYPVTGTHT 147 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcc---eE--EEccCHHHHHHHHHHHhCC-----CC---CEEEEeCCCCccHHHHH
Confidence 677788888888888777754 331 26 8999999999999888763 67 89999999999999999
Q ss_pred hhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 244 QYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 244 ~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
+.+|++++.+|+++ ++.+|++++++++.+++++|++++|+||||.+.+ +++|.++|++||+++++|.+|+.+...
T Consensus 148 ~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~ 227 (410)
T PRK06290 148 KYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFD 227 (410)
T ss_pred HHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeC
Confidence 99999999999985 5678999999999889999999999999999988 578888899999999999999865421
Q ss_pred hhhhcCCCCCCCcc-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675 319 FAKKLGYPIPPFDF-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396 (438)
Q Consensus 319 f~~~~g~~~p~~~~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~ 396 (438)
+...+-... .....+++..|..|.. .++..+|+++.. +++..........+..+ .....
T Consensus 228 -----~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-~~l~~~l~~~~~~~~~~-------------~~~~~ 288 (410)
T PRK06290 228 -----GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-ELIVKAFATVKDNNDSG-------------QFIAI 288 (410)
T ss_pred -----CCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeC-HHHHHHHHHHHhccccC-------------CcHHH
Confidence 000110111 1123568888999994 244458987753 44433221111111110 00112
Q ss_pred HHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 397 AWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 397 ~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+.++...+.. +..++..++..+.++++.+.|++. |+.
T Consensus 289 q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 326 (410)
T PRK06290 289 QKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFK 326 (410)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 2333333322 335566777788888999999876 443
No 188
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.74 E-value=2e-16 Score=159.80 Aligned_cols=228 Identities=15% Similarity=0.108 Sum_probs=156.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
..+..++.+++.+++++++|.+ ++ + ++|+| ++++..+++++. ++| |+|+++++.|+++...++.
T Consensus 82 ~~G~~~l~~~l~~~la~~~g~~-~~----i--~~tsG-~~a~~~~~~~l~-----~~g---d~vi~~~~~~~~~~~~~~~ 145 (397)
T PRK06939 82 ICGTQDLHKELEEKLAKFLGTE-DA----I--LYSSC-FDANGGLFETLL-----GKE---DAIISDALNHASIIDGVRL 145 (397)
T ss_pred ccCCcHHHHHHHHHHHHHhCCC-cE----E--EEcCh-HHHHHHHHHHhC-----CCC---CEEEEEhhhhHHHHHHHHh
Confidence 4566778889999999999975 33 3 55554 888888887764 367 9999999999999999999
Q ss_pred cCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 246 FNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
.|.+++.++. .|++++++++++ ++++|+..+..+++|.+.++++|.++|++||+++++|++|+.+...
T Consensus 146 ~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~- 219 (397)
T PRK06939 146 CKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVG- 219 (397)
T ss_pred cCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcC-
Confidence 9999887764 488999888864 6888888888899999999999999999999999999999522221
Q ss_pred hhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 320 AKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 320 ~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
..|.. .+..+. ..++|+++.++||++.++ ..|+++.+ +++.+........+ ...++......+++.
T Consensus 220 --~~~~~~~~~~~~-~~~~~i~~~S~sK~~~g~-r~G~v~~~-~~~~~~l~~~~~~~--------~~~~~~~~~~~~a~~ 286 (397)
T PRK06939 220 --ENGRGTVEHFGV-MDRVDIITGTLGKALGGA-SGGYTAGR-KEVIDWLRQRSRPY--------LFSNSLAPAIVAASI 286 (397)
T ss_pred --CCCCCHHHHcCC-CCCCcEEEEECHHHhCcc-CceEEEeC-HHHHHHHHHhCccc--------cccCCCCHHHHHHHH
Confidence 11100 000111 235789999999996455 45887665 33333211111111 011111222234455
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++++.+. ...+..++..++++++.+.|+++
T Consensus 287 ~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~ 316 (397)
T PRK06939 287 KVLELLE--ESDELRDRLWENARYFREGMTAA 316 (397)
T ss_pred HHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc
Confidence 5565442 23566778888899999998875
No 189
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.73 E-value=7.3e-17 Score=160.80 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=154.7
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.+|+++++ | ++|+|+++++.+++.++.. +| .++|+++.+.|+.+...++.+|++++.+|
T Consensus 64 ~Lr~aia~~~~~~~~~----I--~it~Gs~~~i~~~~~~~~~-----~g--~d~vlv~~P~y~~y~~~~~~~g~~v~~v~ 130 (354)
T PRK04635 64 ELINAYSAYAGVAPEQ----I--LTSRGADEAIELLIRAFCE-----PG--QDSIACFGPTYGMYAISAETFNVGVKALP 130 (354)
T ss_pred HHHHHHHHHhCcCHHH----E--EEeCCHHHHHHHHHHHhcC-----CC--CCeEEEcCCChHHHHHHHHHcCCEEEEEe
Confidence 4556678888998876 7 8999999999999988752 33 16899999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~ 333 (438)
+++++.+|++.+++ + ++|++|++++|+||||.+.|.+++.++++.. ++++++|++|..+... .. ...+...
T Consensus 131 ~~~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~--~s----~~~~~~~ 202 (354)
T PRK04635 131 LTADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE--YS----VADLLAS 202 (354)
T ss_pred cCCCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC--cc----hHHHHhh
Confidence 98788999999974 4 6899999999999999999999999999864 7999999999755421 00 0011111
Q ss_pred CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHH
Q 013675 334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGY 409 (438)
Q Consensus 334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~ 409 (438)
... -++..+++|+.. ++..+|+++.+ +++.+........|.. + .....+++..+ |.+.+
T Consensus 203 ~~~-~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~~~~~------------~---~~~~~~a~~~l~~~~~~~~ 265 (354)
T PRK04635 203 YPN-LVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIAPYPV------------P---LPVSEIATQALSEAGLARM 265 (354)
T ss_pred CCC-EEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcCCCCC------------C---HHHHHHHHHHHhcccHHHH
Confidence 122 256778899932 34457987665 4443322111111110 0 11222333333 23445
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 410 LENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
++..++..+.++++.+.|+++++++
T Consensus 266 ~~~~~~~~~~r~~l~~~L~~~~~~~ 290 (354)
T PRK04635 266 KFQVLDLNAQGARLQAALSMYGGAK 290 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCce
Confidence 5666677778889999998886554
No 190
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.73 E-value=3e-16 Score=157.82 Aligned_cols=222 Identities=18% Similarity=0.118 Sum_probs=160.0
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++++|+++++ | ++|+|+++++.+++.++.+ +| ++|+++.+.|..+...++..|++++.+|
T Consensus 90 ~lr~~ia~~~~~~~~~----I--~~t~Ga~~~i~~~~~~~~~-----~g---d~Vlv~~P~y~~y~~~~~~~g~~~~~v~ 155 (380)
T PLN03026 90 RLRAALAEDSGLESEN----I--LVGCGADELIDLLMRCVLD-----PG---DKIIDCPPTFGMYVFDAAVNGAEVIKVP 155 (380)
T ss_pred HHHHHHHHHhCcChhh----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCChHHHHHHHHHcCCEEEEee
Confidence 5677888899998776 6 8999999999998887652 67 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675 255 VDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~ 333 (438)
.++++.+|++++++++ ++++++|++++|+||||.+.|.+++.++++.. +++++|++|..+... +...... .
T Consensus 156 ~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-----~~~~~~~--~ 227 (380)
T PLN03026 156 RTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-----ESRMKWV--K 227 (380)
T ss_pred cCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-----cchHHHH--H
Confidence 9878899999999999 77899999999999999999999999999865 899999999754320 0000001 1
Q ss_pred CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHH
Q 013675 334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLE 411 (438)
Q Consensus 334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~ 411 (438)
...-.++..++.|... ++..+|+++.. +++..........|.- . ..++.++...+. .+.+++
T Consensus 228 ~~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~~~~-------------~--~~~q~aa~~aL~~~~~~~~ 291 (380)
T PLN03026 228 KYDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQPYNV-------------S--VAAEVAACAALSNPKYLED 291 (380)
T ss_pred hCCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCCCCC-------------C--HHHHHHHHHHhhCHHHHHH
Confidence 1123577788899932 44558887654 3333221111111110 0 113333333332 244567
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcc
Q 013675 412 NTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..++..+..+++.+.|+++++++
T Consensus 292 ~~~~~~~~r~~l~~~L~~~~~~~ 314 (380)
T PLN03026 292 VKNALVEERERLFGLLKEVPFLE 314 (380)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCe
Confidence 77778888899999998876543
No 191
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.73 E-value=6.3e-16 Score=154.95 Aligned_cols=225 Identities=16% Similarity=0.082 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
.+++.+++++++|.+. + ++|+|||+|+.+++.++. .++| |+|+++..+|++...++...|++++.
T Consensus 33 ~~~~e~~la~~~g~~~------~--v~~~sgt~aL~~~l~al~----~~pG---d~Viv~~~t~~~~~~~~~~~G~~~v~ 97 (376)
T TIGR02379 33 SRRCETWLENRTGTKK------A--LLTPSCTAALEMAALLLD----IQPG---DEVIMPSYTFVSTANAFVLRGAKIVF 97 (376)
T ss_pred HHHHHHHHHHHhCCCe------E--EEeCCHHHHHHHHHHHcC----CCCc---CEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 3445556788887752 4 899999999999888752 1367 89999999999999999999999999
Q ss_pred eeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 253 VPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 253 v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
+++++ ++.+|+++++++++++|++|+. ++++|...|+++|.++|++||+++++|++++-+.. ++
T Consensus 98 vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~------------~~ 162 (376)
T TIGR02379 98 VDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST------------YK 162 (376)
T ss_pred EecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc------------cC
Confidence 99987 4789999999999999999874 45689999999999999999999999999863321 11
Q ss_pred cCCCCc--cEEEeCCC--CCCCCCCCcEEEEEecccccccchhccc-ccCCCc-c------CCCCccCC--CCCchHHHH
Q 013675 332 FSVQGV--TSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGL-Y------VSPTVAGS--RPGGLIAGA 397 (438)
Q Consensus 332 ~~~~gv--dsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~-~------~~~~~~gs--r~~~~ia~~ 397 (438)
.+..|. |..++|+| |.+..+...|+++++++++.+....... ...... + ......|. |...+.|++
T Consensus 163 ~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~ 242 (376)
T TIGR02379 163 GRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAY 242 (376)
T ss_pred CcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHH
Confidence 111222 55555554 4433322357788887765544222110 000000 0 00011222 333332222
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
. .-..+.+++..++.++++++..+.|+.++
T Consensus 243 g----~~qL~~l~~~~~~r~~~~~~y~~~L~~~~ 272 (376)
T TIGR02379 243 L----WAQLEQADRINQDRLATWQLYQDALKPLE 272 (376)
T ss_pred H----HHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence 2 12235568888888888888888887654
No 192
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.73 E-value=6.1e-16 Score=155.58 Aligned_cols=226 Identities=21% Similarity=0.224 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (438)
Q Consensus 168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G 247 (438)
+......++++++++++|.+ . . +++++|++++..+++++. ++| ++|+++.+.|+++..++...|
T Consensus 81 g~~~~~~~l~~~la~~~~~~-~-----~--i~~~~g~~~~~~~l~~~~-----~~g---d~V~~~~~~~~~~~~~~~~~g 144 (385)
T PRK05958 81 GNSPAHEALEEELAEWFGAE-R-----A--LLFSSGYAANLAVLTALA-----GKG---DLIVSDKLNHASLIDGARLSR 144 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCC-c-----E--EEECcHHHHHHHHHHHhC-----CCC---CEEEEeCccCHHHHHHHHhcC
Confidence 33455677888999999853 2 2 677788888887776653 367 899999999999999999999
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
++++.+|. .|++++++++++ ++.++++.++++++|.+.|+++|+++|++||+++++|++|+.+..+ ..|
T Consensus 145 ~~~~~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~---~~g 216 (385)
T PRK05958 145 ARVRRYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLG---PQG 216 (385)
T ss_pred CceEEeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccC---CCC
Confidence 99988875 388999999975 3677888888999999999999999999999999999999654332 011
Q ss_pred CCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHH
Q 013675 325 YPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMS 403 (438)
Q Consensus 325 ~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~ 403 (438)
...+. +.......+++..++||+ +++.| |+++.+ +++.+........+ ...++.+....+++.++++.
T Consensus 217 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G-g~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~aa~~aal~~ 285 (385)
T PRK05958 217 RGLAAEAGLAGEPDVILVGTLGKA-LGSSG-AAVLGS-ETLIDYLINRARPF--------IFTTALPPAQAAAARAALRI 285 (385)
T ss_pred CchHHhhCCCCCCceEEEEechhh-cccCC-cEEEcC-HHHHHHHHHhCccc--------eecCCCCHHHHHHHHHHHHH
Confidence 10001 111112235778899999 46666 665544 44332211100001 00111111224455566655
Q ss_pred HcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 404 LGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 404 ~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+... .+..++..++++++.+.|++.
T Consensus 286 ~~~~--~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T PRK05958 286 LRRE--PERRERLAALIARLRAGLRAL 310 (385)
T ss_pred HhcC--HHHHHHHHHHHHHHHHHHHHc
Confidence 4222 567788888999999999875
No 193
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.73 E-value=1.1e-15 Score=157.57 Aligned_cols=238 Identities=12% Similarity=0.167 Sum_probs=164.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 163 LDIFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
|....+..++.+.+.+++.+.+| +++++ | ++|+|+++++.+++.++.+ +| |.|+++.+.|+.
T Consensus 82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~----I--iit~Ga~~al~~l~~~l~~-----pG---d~Vlv~~P~Y~~ 147 (468)
T PLN02450 82 FQDYHGLPAFKNALAEFMSEIRGNKVTFDPNK----L--VLTAGATSANETLMFCLAE-----PG---DAFLLPTPYYPG 147 (468)
T ss_pred CCCCCChHHHHHHHHHHHHHhhCCCCCcChHH----e--EEccChHHHHHHHHHHhCC-----CC---CEEEECCCCCCc
Confidence 33455667788888888887766 34554 6 8999999999999998763 77 899999999999
Q ss_pred HHHHHh-hcCcEEEEeeCC--CCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 239 YDKAAQ-YFNIKLWRVPVD--KEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 239 ~~~a~~-~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
+...+. ..|++++.||++ +++.+|++++++++.+ +++++++++|+||||.+.+ +++|.++|+++|+++
T Consensus 148 ~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~i 227 (468)
T PLN02450 148 FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHL 227 (468)
T ss_pred hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEE
Confidence 988888 589999999986 3678899999998864 6899999999999999977 567888899999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCCcc---------CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccC
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPFDF---------SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWS 376 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~~~---------~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~ 376 (438)
++|.+|+.+... ...+ .+.... ....-..+..+..|.+. ++..+|+++..++.+.+..... ..+.
T Consensus 228 I~DE~Y~~~~f~---~~~~-~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~-~~~~ 302 (468)
T PLN02450 228 ISDEIYSGTVFD---SPGF-VSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM-SSFG 302 (468)
T ss_pred EEEccccccccC---CCCc-ccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH-hhcC
Confidence 999999865431 0000 000110 01122467778899853 6677999887655433321111 1100
Q ss_pred CCccCCCCccCCCCCchHHHHHHHHHHHcH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-----EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. .. ...+.++...+.. ..+++..++..+..+.+.+.|+++ |+.
T Consensus 303 -----------~-~s--~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~ 350 (468)
T PLN02450 303 -----------L-VS--SQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIK 350 (468)
T ss_pred -----------C-CC--HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 0 00 1133333333432 235666777888888888888876 554
No 194
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.72 E-value=3.6e-16 Score=150.13 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=176.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC---cCcH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAY 239 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~---h~s~ 239 (438)
|.....+.++|..+++...+|||++..+ +-..+|+.||..+..++.+ +| |.|+-.+.. |-+.
T Consensus 64 YgGce~VD~vE~laierak~LFga~~an-------VQPhSGs~AN~av~~All~-----pG---Dtimgm~l~~GGHltH 128 (413)
T COG0112 64 YGGCEYVDEVEELAIERAKKLFGAEYAN-------VQPHSGSQANQAVYLALLQ-----PG---DTIMGLDLSHGGHLTH 128 (413)
T ss_pred cCCCeeHHHHHHHHHHHHHHHhCCCccc-------cCCCCchHHHHHHHHHHcC-----CC---CeEecccCCCCCcccC
Confidence 3445567888999999999999999877 6888999999999999884 88 888765554 3333
Q ss_pred HHHHhhcC--cEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675 240 DKAAQYFN--IKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 240 ~~a~~~~G--i~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
-.-....| .+++..++|+ ++.+|.+++++.+.+ +|++|++-. +.+-...|++++.++|++.|.++.+|.++=.+
T Consensus 129 g~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaG 206 (413)
T COG0112 129 GSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAG 206 (413)
T ss_pred CCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECc--cccccccCHHHHHHHHHHhCceEEehHHHHHH
Confidence 32222334 3677778885 799999999998865 799887544 34556789999999999999999999998666
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh-cccccCCCccCCCCccCCCCCchH
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLYVSPTVAGSRPGGLI 394 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~-~~~~~~g~~~~~~~~~gsr~~~~i 394 (438)
++. .|. +.--.+.+|+++.++||.+.||.| |+++++++++.+..-. ..|. ..|...-..|
T Consensus 207 LVA----~G~----~p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg----------~qggpl~Hvi 267 (413)
T COG0112 207 LIA----GGV----HPNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPG----------LQGGPLMHVI 267 (413)
T ss_pred HHh----ccc----CCCCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCc----------cCCChHHHHH
Confidence 552 332 112223489999999999999987 8888887555443211 2222 2222223347
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 395 AGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 395 a~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
|+...+++...+.++++..++..++|+.|++.|.+. |++++
T Consensus 268 AakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vv 308 (413)
T COG0112 268 AAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVV 308 (413)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEe
Confidence 788888888888999999999999999999999885 77653
No 195
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.72 E-value=1.5e-15 Score=153.21 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=167.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|...++..++.+.+.+++.+..|. +++ + | ++|+|+++++.+++.++.+ +| |+|+++.++|+
T Consensus 62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~Gs~~al~~~~~~l~~-----~g---d~Vlv~~P~y~ 127 (388)
T PRK07366 62 HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETE----V--LPLIGSQEGTAHLPLAVLN-----PG---DFALLLDPGYP 127 (388)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCe----E--EECCCcHHHHHHHHHHhCC-----CC---CEEEEcCCCCc
Confidence 34555567777888888888877775 444 3 6 7899999999999988763 67 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccc
Q 013675 238 AYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~ 312 (438)
.+...++..|++++.+|+++ ++.+|++++++.+.++++++++++|+||||.+.+ +++|.++|++||+++++|.+|
T Consensus 128 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y 207 (388)
T PRK07366 128 SHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPY 207 (388)
T ss_pred chHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecch
Confidence 99999999999999999975 4678999999888888999999999999999977 567788999999999999999
Q ss_pred cchhhhhhhhcCCCCCCC-ccCCC-CccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675 313 GGFVLPFAKKLGYPIPPF-DFSVQ-GVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~-~~~~~-gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr 389 (438)
+.+... .... .+.+ ..... ...++..|+.|.. ..+..+|+++. ++++.+........+..+ .
T Consensus 208 ~~~~~~--~~~~--~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~----------~ 272 (388)
T PRK07366 208 VDLVFD--GEVE--PPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFN----------Q 272 (388)
T ss_pred hhcccC--CCCC--CCChhhCCCCcccEEEEeecccccCCcchhheehcC-CHHHHHHHHHHHhhcccC----------C
Confidence 866531 0000 1111 11111 1245677899995 35567998765 444443221111111100 0
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
......++.+++.. ..+.+++..+...+..+++.+.|+++ ++.
T Consensus 273 ~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~ 315 (388)
T PRK07366 273 YRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQI-GWP 315 (388)
T ss_pred CHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 01111122233311 24556777788888888899998876 443
No 196
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.72 E-value=7.5e-16 Score=154.67 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
..+++.+++++.+|.+. + ++|+|||+|+.+++.++. .++| ++|+++.++|+++..++...|++++
T Consensus 32 ~~~~~e~~la~~~g~~~------~--v~~~sgt~al~~~l~~~~----~~~G---d~Viv~~~t~~~~~~~~~~~G~~~v 96 (375)
T PRK11706 32 FTRRCQQWLEQRFGSAK------V--LLTPSCTAALEMAALLLD----IQPG---DEVIMPSYTFVSTANAFVLRGAKIV 96 (375)
T ss_pred HHHHHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHhC----CCCC---CEEEECCCCcHHHHHHHHHcCCEEE
Confidence 34555567888888752 4 899999999988877652 1367 8999999999999999999999999
Q ss_pred EeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 252 RVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 252 ~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
.+++++ ++.+|+++++++++++|++|++++ ++|...|+++|.++|+++|+++++|++++.+.. +
T Consensus 97 ~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~------------~ 161 (375)
T PRK11706 97 FVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMST------------Y 161 (375)
T ss_pred EEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccc------------c
Confidence 999987 468999999999999999998775 489999999999999999999999999864321 1
Q ss_pred ccCCCC--ccEEEeCCC--CCCCCCCCcEEEEEecccccccchhccc-ccCCCcc-------CCCCccCCC--CCchHHH
Q 013675 331 DFSVQG--VTSISVDVH--KYGLAPKGTSVVLYRNREIRKHQFVAVT-EWSGGLY-------VSPTVAGSR--PGGLIAG 396 (438)
Q Consensus 331 ~~~~~g--vdsis~s~h--K~~~~p~g~g~l~~r~~~~~~~~~~~~~-~~~g~~~-------~~~~~~gsr--~~~~ia~ 396 (438)
+.+..| .|.-++|+| |.+ ++...|+++++++++.+....... .+..... ......|.. ...+.
T Consensus 162 ~~~~~g~~~~~~~~Sf~~~K~l-~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 238 (375)
T PRK11706 162 KGRALGTIGHIGCFSFHETKNY-TAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQ-- 238 (375)
T ss_pred CCeeeecCcCEEEEeCCCCccc-cccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHH--
Confidence 111111 256666666 985 443346566766655432111110 0000000 000011222 22222
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 397 AWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 397 ~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
+++.....+.+++..++..++++++.+.|++++
T Consensus 239 --aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~ 271 (375)
T PRK11706 239 --AAYLWAQLEAADRINQRRLALWQRYYDALAPLA 271 (375)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222222235578888888999999999998876
No 197
>PRK09265 aminotransferase AlaT; Validated
Probab=99.72 E-value=1.8e-15 Score=153.55 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=133.0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHh--CCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALL--GNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~--g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
..|....+..++.+.+.+++.... +.++++ + ++|+|+++++.+++.++. ++| ++|+++.++|+.
T Consensus 66 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~p~y~~ 131 (404)
T PRK09265 66 QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDD----I--YIGNGVSELIVMAMQALL-----NNG---DEVLVPAPDYPL 131 (404)
T ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCCCCccc----E--EEeCChHHHHHHHHHHhC-----CCC---CEEEEeCCCCcC
Confidence 344444555556555555543321 556655 6 899999999999988875 367 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~g 313 (438)
+..+++..|.+++.++++. ++.+|++++++++++++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+
T Consensus 132 ~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 211 (404)
T PRK09265 132 WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYD 211 (404)
T ss_pred hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhh
Confidence 9999999999999998864 5779999999999989999999999999999988 8899999999999999999997
Q ss_pred chhhhhhhhcCCCCCCCccCCCCcc-EEEeCCCCCC-CCCCCcEEEEEe
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVT-SISVDVHKYG-LAPKGTSVVLYR 360 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvd-sis~s~hK~~-~~p~g~g~l~~r 360 (438)
.+... +...+++........ ++..+..|.. .....+|+++..
T Consensus 212 ~~~~~-----~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~ 255 (404)
T PRK09265 212 KILYD-----GAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS 255 (404)
T ss_pred hccCC-----CCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence 65421 000111111111222 3445668984 344568998864
No 198
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.72 E-value=9.4e-16 Score=154.42 Aligned_cols=233 Identities=16% Similarity=0.120 Sum_probs=156.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
+....+..++.+++.+++++++|.+. . +++++|++++..++.++. .+| ++|+++.+.|+++...
T Consensus 70 ~~~~~g~~~l~~~l~~~l~~~~g~~~-~-------i~~~sG~~a~~~a~~~~~-----~~g---d~vi~~~~~~~~~~~~ 133 (385)
T TIGR01825 70 VRTIAGTLRLHEELEEKLAKFKKTEA-A-------LVFQSGFNTNQGVLSALL-----RKG---DIVLSDELNHASIIDG 133 (385)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCc-E-------EEECcHHHHHHHHHHHhC-----CCC---CEEEEEccccHHHHHH
Confidence 44455667788899999999999643 2 344455888888888765 367 8999999999999988
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
+...|++++.++ .+|++++++.+.+ ++++|+.+++.+++|.+.|+++|.++|++||+++++|++|+.+..+
T Consensus 134 ~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~ 208 (385)
T TIGR01825 134 LRLTKATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMG 208 (385)
T ss_pred HHhcCCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcC
Confidence 888888877664 4688888887764 6889999999999999999999999999999999999999755432
Q ss_pred hhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675 319 FAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 319 f~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~ 397 (438)
..|.. .+.++.. .++|++..+++|++ ++.| |+++.+ +++.+........|.. .+..+....+++
T Consensus 209 ---~~~~~~~~~~~~~-~~~~i~~~s~sK~~-~~~g-G~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~ 273 (385)
T TIGR01825 209 ---EAGRGTVHHFGLE-DKVDIQVGTLSKAI-GVVG-GYAAGH-KELIEYLKNRARPFLF--------STAQPPAVVAAL 273 (385)
T ss_pred ---CCCCccHhhcCCC-cCCcEEEEeccHHh-hcCC-CEEecC-HHHHHHHHHhCccccc--------cCCCCHHHHHHH
Confidence 01100 1112222 46789999999995 5544 665543 3333221111011110 001111223455
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.++++.+.. ..+..++..++++++.+.|+++ |++
T Consensus 274 ~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~ 307 (385)
T TIGR01825 274 AAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYD 307 (385)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 555544322 2345667778889999999875 443
No 199
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.71 E-value=4.1e-16 Score=155.71 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
.++++.+++++|.++++ + ++ |+|+++++..+++++. ++| ++|+++.+.|+.+...++..|++++.
T Consensus 72 ~~lr~~ia~~~~~~~~~----i--~~~~~Ga~~~i~~~~~~~~-----~~g---d~vlv~~p~y~~~~~~~~~~g~~~~~ 137 (361)
T PRK00950 72 PELREALSKYTGVPVEN----I--IVGGDGMDEVIDTLMRTFI-----DPG---DEVIIPTPTFSYYEISAKAHGAKPVY 137 (361)
T ss_pred HHHHHHHHHHhCCCHHH----E--EEeCCCHHHHHHHHHHHhc-----CCC---CEEEEcCCChHHHHHHHHHcCCEEEE
Confidence 45666788888988765 5 66 6788888888877764 267 89999999999998899999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
+|.+.++.+|+++++++++++++++++++|+||||.+.|.+++.++|+++|+++++|++|+.+.- ...+++..
T Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~-------~~~~~~~~ 210 (361)
T PRK00950 138 AKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAE-------YDYTPLAL 210 (361)
T ss_pred eecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCc-------cchHHHHH
Confidence 99877889999999999988899999999999999999999999999999999999999976531 00111110
Q ss_pred CCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675 333 SVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY 409 (438)
Q Consensus 333 ~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~ 409 (438)
.. .-.++..+..|. ++.+| +|+++..+ ++..........|. .. ..++.++...+.. +.+
T Consensus 211 ~~-~~vi~~~S~SK~-~g~~GlRiG~~~~~~-~~~~~~~~~~~~~~-------------~~--~~~~~~a~~~l~~~~~~ 272 (361)
T PRK00950 211 EY-DNLIIGRTFSKV-FGLAGLRIGYGFVPE-WLIDYYMRAKTPFS-------------LT--RLSQAAAIAALSDKEYI 272 (361)
T ss_pred hc-CCEEEEEeehHh-hcCchhhcchhcCCH-HHHHHHHHhcCCCC-------------CC--HHHHHHHHHHhcCHHHH
Confidence 11 123566688898 45444 78876543 33322111111110 01 1133333333432 345
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013675 410 LENTKAIMEVSESIQKGLV 428 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~ 428 (438)
++..++..+..+++.+.|+
T Consensus 273 ~~~~~~~~~~r~~l~~~l~ 291 (361)
T PRK00950 273 EKSIEHGIKSREYLYNELP 291 (361)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 6666777777777777664
No 200
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=6e-16 Score=154.46 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=154.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.++++++.++++ + ++|+|+++++..++.++. .+| ++|+++.++|+.+...+...|++++.+|
T Consensus 68 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~v~~~~p~y~~~~~~~~~~g~~~~~~~ 133 (359)
T PRK03158 68 ELRTKVAKHLGVDEEQ----L--LFGAGLDEVIQMISRALL-----NPG---TNTVMAEPTFSQYRHNAIIEGAEVREVP 133 (359)
T ss_pred HHHHHHHHHhCCCHHH----E--EECCCHHHHHHHHHHHHh-----CCC---CEEEEcCCCHHHHHHHHHHcCCeEEEEe
Confidence 4556677788887765 6 899999999998888775 267 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
++ ++.+|+++++++++++++++++++|+||||.+.|.++|.++++. +|+++++|++|..+... . .. .+.+..
T Consensus 134 ~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~--~--~~-~~~~~~ 207 (359)
T PRK03158 134 LK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTA--E--DY-PDTLPL 207 (359)
T ss_pred cC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCC--c--cc-ccHHHH
Confidence 97 67899999999999899999999999999999999999999887 59999999999765431 0 00 000010
Q ss_pred -CCCCccEEEeCCCCCCCCC--CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675 333 -SVQGVTSISVDVHKYGLAP--KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG 408 (438)
Q Consensus 333 -~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g 408 (438)
...+-.++..++.|. ++. ..+|+++.. +++.+........|. . ...++.++...+. .+.
T Consensus 208 ~~~~~~vi~~~S~SK~-~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~-------------~--~~~~q~~~~~~l~~~~~ 270 (359)
T PRK03158 208 LEKYENLIVLRTFSKA-YGLAALRVGYGIAS-EELIEKLNIARPPFN-------------T--TRIAQYAAIAALEDQAF 270 (359)
T ss_pred HHhcCCEEEEEechHh-hcCcchhhehhcCC-HHHHHHHHHhcCCCC-------------C--CHHHHHHHHHHhcCHHH
Confidence 112235777788998 454 446987654 333322111111110 1 1123444444443 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 013675 409 YLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.++..+...+..+++.+.|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~ 292 (359)
T PRK03158 271 LKECVEKNAEGLEQYYAFCKEY 292 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 5555666677777888888765
No 201
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.71 E-value=3.7e-15 Score=154.36 Aligned_cols=189 Identities=17% Similarity=0.227 Sum_probs=140.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 163 LDIFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
+....|..++.+.+.+++.+.+| .++++ | ++|+|+++++.+++.++.+ +| |.|+++.+.|+.
T Consensus 90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~----I--vit~Ga~~al~~l~~~l~~-----pG---D~Vlv~~P~Y~~ 155 (496)
T PLN02376 90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPER----V--VMSGGATGANETIMFCLAD-----PG---DVFLIPSPYYAA 155 (496)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCcCChhh----E--EEccchHHHHHHHHHHhCC-----CC---CEEEECCCCccc
Confidence 34456777888888888888877 56665 7 8999999999999998874 78 999999999999
Q ss_pred HHHHHh-hcCcEEEEeeCCC--CCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 239 YDKAAQ-YFNIKLWRVPVDK--EFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 239 ~~~a~~-~~Gi~v~~v~~~~--~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
+...+. ..|++++.||++. ++.+|++++++++. .++++|++++|+||||.+.+ +++|.++|+++|+++
T Consensus 156 ~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~l 235 (496)
T PLN02376 156 FDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHL 235 (496)
T ss_pred hHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 999887 5799999999963 67899999987642 36889999999999999987 567888899999999
Q ss_pred EEeccccchhhh---hhhhcCCCCCCCccC--CCCccEEEeCCCCCC-CCCCCcEEEEEecccccc
Q 013675 307 HVDLCLGGFVLP---FAKKLGYPIPPFDFS--VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRK 366 (438)
Q Consensus 307 hVD~a~gg~~~p---f~~~~g~~~p~~~~~--~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~ 366 (438)
++|++|+.+... |..-... .+..+.. ....-.+..+++|.+ ..+..+|+++..++.+..
T Consensus 236 I~DEiY~~~~f~~~~~~si~~l-~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~ 300 (496)
T PLN02376 236 VVDEIYAATVFAGGDFVSVAEV-VNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVS 300 (496)
T ss_pred EEEcCccccccCCCCcccHHHh-hccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHH
Confidence 999999876431 1000000 0000110 011224467999985 355779998876555443
No 202
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.71 E-value=1.4e-15 Score=153.74 Aligned_cols=252 Identities=17% Similarity=0.171 Sum_probs=167.2
Q ss_pred HHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (438)
Q Consensus 147 ~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~ 222 (438)
.+.+++..... ....|....+..++.+.+.+++.+.+|.+ +++ ++ ++|+|+++++.+++.++.+ +
T Consensus 45 ~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~---~i--~it~Ga~~al~~~~~~l~~-----~ 113 (393)
T TIGR03538 45 FVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPER---HV--LPVNGTREALFAFAQAVIN-----P 113 (393)
T ss_pred HHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCc---eE--EECCCcHHHHHHHHHHHcC-----C
Confidence 34444443332 23345445666778888888888877654 321 25 8899999999999998763 6
Q ss_pred CCCCCe--EEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHH
Q 013675 223 GITRPE--MIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQEL 295 (438)
Q Consensus 223 G~~~~~--Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I 295 (438)
| ++ |+++.+.|+.+...++..|++++.+|+++ ++.+|++++++++.++++++++++|+||||.+.+ +++|
T Consensus 114 g---d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l 190 (393)
T TIGR03538 114 G---QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKL 190 (393)
T ss_pred C---CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHH
Confidence 6 54 99999999999999999999999999964 4678999999999889999999999999999977 7888
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC-C-ccC-----CCCccEEEeCCCC-CCCCCCCcEEEEEeccccccc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP-F-DFS-----VQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKH 367 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~-~~~-----~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~~~~~ 367 (438)
.++|++||+++++|.+|..+... . +.+.++ + ... ...-.++..|..| ++..+..+|+++.. +++...
T Consensus 191 ~~~a~~~~~~ii~De~Y~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~-~~l~~~ 265 (393)
T TIGR03538 191 IELADQYGFIIASDECYSELYFD---E-GNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD-AEILKA 265 (393)
T ss_pred HHHHHHCCEEEEECcchhhcccC---C-CCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecC-HHHHHH
Confidence 99999999999999999755421 0 000000 0 000 0112367788999 56677789997654 333322
Q ss_pred chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
...... +. +.... ...+.+++..+. .+.+++..+...+..+.+.+.|++.
T Consensus 266 ~~~~~~-~~----------~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 266 FLRYRT-YH----------GCAMP--IPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred HHHHHH-hh----------ccCcC--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111110 00 00001 113333333332 3345566666777777787777653
No 203
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.71 E-value=3.1e-15 Score=151.77 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=163.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
...|...++...+.+.+.+++.+.+|.+ +++ ++ ++|+|+++++.+++.++.+ +| |.|+++.++|+
T Consensus 64 ~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~---~I--~it~G~~~al~~~~~~l~~-----~g---d~Vlv~~P~y~ 130 (403)
T PRK08636 64 THGYSVSKGIYKLRLAICNWYKRKYNVDLDPET---EV--VATMGSKEGYVHLVQAITN-----PG---DVAIVPDPAYP 130 (403)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---eE--EECCChHHHHHHHHHHhCC-----CC---CEEEEcCCCCc
Confidence 3445556777888888899998887854 331 26 8999999999999998763 77 99999999999
Q ss_pred cHHHHHhhcCcEEEEeeCC--CCCccCHHHH----HHhhc---cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCe
Q 013675 238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAI----KKYIN---RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTC 305 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~L----e~~I~---~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~ 305 (438)
.+..+++..|++++.+|++ +++.+|++++ +++++ .+++++++++|+||||.+.+ +++|.++|++|+++
T Consensus 131 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~ 210 (403)
T PRK08636 131 IHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFY 210 (403)
T ss_pred chHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcE
Confidence 9999999999999999985 3578998754 56554 46899999999999999977 57888899999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS 382 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~ 382 (438)
+++|.+|+.+... +...+++. . ......+.+.++.|.. .....+|+++. ++++...... ...+... .
T Consensus 211 II~De~Y~~l~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~li~~~~~-~~~~~~~--~- 280 (403)
T PRK08636 211 IISDIAYADITFD-----GYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKK-IKSWLDY--G- 280 (403)
T ss_pred EEEeccchhhccC-----CCCCCChhcCCCccccEEEEEecccccCCccceeeeeeC-CHHHHHHHHH-HHHHhcc--c-
Confidence 9999999865431 11011111 1 1112345567899995 45567999765 4444332111 1111000 0
Q ss_pred CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.+.+ ...++. .++. -..+.+++..+...+..+.+.+.|++.
T Consensus 281 ----~~~~-~q~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (403)
T PRK08636 281 ----MFTP-IQVAAT-IALD-GDQSCVEEIRETYRKRRDVLIESFANA 321 (403)
T ss_pred ----CChH-HHHHHH-HHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0001 111111 2222 124456666777778888888888775
No 204
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.71 E-value=4.1e-16 Score=155.97 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=155.6
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HH
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YD 240 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~ 240 (438)
..|...++|+ .++++.|.+. . +.+++|+.|+.+++.++. ++| |+|+++...|.. +.
T Consensus 62 ~~P~~~~lE~----~la~leg~~~------a--v~~sSG~aAi~~al~all-----~~G---D~Vl~~~~~yg~t~~~~~ 121 (384)
T PRK06434 62 GNPTVQAFEE----KYAVLENAEH------A--LSFSSGMGAITSAILSLI-----KKG---KRILSISDLYGQTFYFFN 121 (384)
T ss_pred CChhHHHHHH----HHHHHhCCCc------E--EEeCCHHHHHHHHHHHHh-----CCC---CEEEEecCccchHHHHHH
Confidence 4566666666 4888888763 2 789999999999998864 378 999998764333 34
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
..+..+|++++.+++++...++ +++ +|++|++.+++||++.+.|+++|+++|++++ ++||++++....
T Consensus 122 ~~~~~~Gi~v~fvd~~~~~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~-- 190 (384)
T PRK06434 122 KVLKTLGIHVDYIDTDRLNSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN-- 190 (384)
T ss_pred HHHHhcCcEEEEECCCChhhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc--
Confidence 6777889999999986422222 333 6899999999999999999999999999998 567999764322
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~ 397 (438)
..++ ..|+|+++.|.||++.++.+ .|+++.+++++.+........ .|..... ..+
T Consensus 191 -------~~pl---~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~-----------~G~~~~~--~~A 247 (384)
T PRK06434 191 -------QNPL---DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKT-----------LGSNPDP--IQA 247 (384)
T ss_pred -------CCch---hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHh-----------cCCCCCH--HHH
Confidence 1122 35799999999999777665 576666665543322111000 1111111 144
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
|..+ .|.+.+..++++..++++.+.+.|+++|.++-++|
T Consensus 248 ~l~~--~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~y 286 (384)
T PRK06434 248 YLAL--RGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYY 286 (384)
T ss_pred HHHH--hCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence 4444 56688899999999999999999999998876554
No 205
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=4.4e-16 Score=155.00 Aligned_cols=220 Identities=16% Similarity=0.149 Sum_probs=156.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.++++++.++++ + ++|+|+++++.++++++.+ +| |+|+++.+.|+.+...++.+|++++.+|
T Consensus 64 ~lr~aia~~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~~~~v~ 129 (353)
T PRK05387 64 ALRQAIAAYYGLDPEQ----V--FVGNGSDEVLAHAFLAFFN-----HD---RPLLFPDITYSFYPVYAGLYGIPYEEIP 129 (353)
T ss_pred HHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEEeCCCHHHHHHHHHHcCCEEEEee
Confidence 6677788888988775 6 9999999999999998863 77 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~ 333 (438)
+++++.+|++++++ +++++++++|+||||.+.|.+++.++++.+ ++++++|++|..+.- ....+.- .
T Consensus 130 ~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~-------~~~~~~~-~ 197 (353)
T PRK05387 130 LDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGG-------ESAIPLI-D 197 (353)
T ss_pred cCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCC-------cchHHHH-h
Confidence 98888999999974 457889999999999999999999999886 999999999864321 0000110 1
Q ss_pred CCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHHH
Q 013675 334 VQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYLE 411 (438)
Q Consensus 334 ~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~~ 411 (438)
...-+++..+++|... .+..+|+++. ++++.+........+. ..+ ....+++++...+. .+.+++
T Consensus 198 ~~~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~---------~~~---~~~~~q~~~~~~l~~~~~~~~ 264 (353)
T PRK05387 198 RYPNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSFN---------SYP---LDRLAQAGAIAAIEDEAYFEE 264 (353)
T ss_pred hCCCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccCC---------CCC---cCHHHHHHHHHHhcCHHHHHH
Confidence 1123578889999843 3345898765 3444332111110000 000 01113333333332 345677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcc
Q 013675 412 NTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..++..++++++.+.|+++ +++
T Consensus 265 ~~~~~~~~~~~l~~~L~~~-g~~ 286 (353)
T PRK05387 265 TRAKVIATRERLVEELEAL-GFE 286 (353)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCe
Confidence 7888888899999999876 544
No 206
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.71 E-value=1e-15 Score=152.30 Aligned_cols=223 Identities=19% Similarity=0.167 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
....++++.+++++|.+. . +++++|++++..++.++. ++| ++|+++.+.|+++...++..|+++
T Consensus 61 ~~~~~l~~~la~~~~~~~-~-------i~~~~G~~~~~~~l~~~~-----~~g---d~v~~~~~~~~~~~~~~~~~g~~~ 124 (360)
T TIGR00858 61 PLHEELEEELAEWKGTEA-A-------LLFSSGYLANVGVISALV-----GKG---DLILSDALNHASLIDGCRLSGARV 124 (360)
T ss_pred HHHHHHHHHHHHHhCCCC-E-------EEECchHHHHHHHHHHhC-----CCC---CEEEEEccccHHHHHHHHhcCCce
Confidence 455667788888888542 2 455566788777766654 367 899999999999999999999999
Q ss_pred EEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP 326 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~ 326 (438)
+.++. +|++++++++++ +++++++.++++++|.+.|+++|.++|+++|+++++|++|+.+..+. .+..
T Consensus 125 ~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~ 196 (360)
T TIGR00858 125 RRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGE---DGRG 196 (360)
T ss_pred EEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCC---CCCc
Confidence 88874 589999999874 47899999999999999999999999999999999999997443321 0000
Q ss_pred -CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 327 -IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 327 -~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
.+.++....+.+++..+++|+ +++.| |+++.+ +++.+........|. ..++.+...++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~i~i~s~sK~-~~~~g-G~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~ 265 (360)
T TIGR00858 197 TLEHFGLKPEPVDIQVGTLSKA-LGSYG-AYVAGS-QALIDYLINRARTLI--------FSTALPPAVAAAALAALELIQ 265 (360)
T ss_pred hHHhcCCCccCCcEEEEechhh-hhccC-cEEEcC-HHHHHHHHHhCccce--------ecCCCCHHHHHHHHHHHHHHh
Confidence 001122234678999999999 56766 776554 333322111111110 011111122345555665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..++..++..++.+++.+.|+++
T Consensus 266 --~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 266 --EEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHc
Confidence 23566788899999999999876
No 207
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=5.2e-16 Score=155.69 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=158.9
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++++|+++++ + ++|+|+++++.+++.++. ++| ++|+++.++|+.+...++..|++++.+|
T Consensus 75 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~~~-----~~g---d~vli~~P~y~~~~~~~~~~g~~~~~v~ 140 (371)
T PRK05166 75 ALREAIAARTGVPADR----I--ILGNGSEDLIAVICRAVL-----RPG---DRVVTLYPSFPLHEDYPTMMGARVERVT 140 (371)
T ss_pred HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEcCCChHHHHHHHHHcCCeEEEee
Confidence 4666788888987765 6 899999999998888764 367 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCC-Cc
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPP-FD 331 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~-~~ 331 (438)
+++++.+|+++++++++++|+++++++|+||||.+.|.+++.++++. .++++++|++|+.+.. +...+. +.
T Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~------~~~~~~~~~ 214 (371)
T PRK05166 141 VTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA------GDDYPSALT 214 (371)
T ss_pred cCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC------CcCcccHHH
Confidence 98888999999999999899999999999999999998777777664 4789999999976541 000111 11
Q ss_pred c-CCCC-ccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHH
Q 013675 332 F-SVQG-VTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQE 407 (438)
Q Consensus 332 ~-~~~g-vdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~ 407 (438)
. ...+ -.++..++.|.+. .+..+|+++..++++.+........|. .. ..+..+++..+ ..+
T Consensus 215 ~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~-------------~~--~~~q~~~~~~l~~~~ 279 (371)
T PRK05166 215 LLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFN-------------VN--GAAQAAALAALDDEE 279 (371)
T ss_pred HHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCC-------------CC--HHHHHHHHHHhcCHH
Confidence 1 1111 2367778899943 556689877766655433211111111 01 11222223222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+++..+...+..+++.+.|++. +++
T Consensus 280 ~~~~~~~~~~~~r~~l~~~L~~~-g~~ 305 (371)
T PRK05166 280 HLAKGVALALAERERLKKELAEM-GYR 305 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-cCe
Confidence 56666777788888899999876 443
No 208
>PRK03321 putative aminotransferase; Provisional
Probab=99.71 E-value=4.1e-16 Score=155.24 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.+++++|.++++ + ++|+|+++++..++.+.. ++| ++|+++.+.+..+..+++..|++++.+
T Consensus 60 ~~lr~~ia~~~~~~~~~----I--~~~~G~~~~l~~~~~~~~-----~~g---d~Vli~~p~y~~~~~~~~~~g~~~~~v 125 (352)
T PRK03321 60 VELRAALAEHLGVPPEH----V--AVGCGSVALCQQLVQATA-----GPG---DEVIFAWRSFEAYPILVQVAGATPVQV 125 (352)
T ss_pred HHHHHHHHHHhCcCHHH----E--EECCCHHHHHHHHHHHhc-----CCC---CEEEeCCCCHHHHHHHHHHcCCEEEEc
Confidence 35556788888887765 6 889999998888877654 367 899999999888888899999999999
Q ss_pred eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
|+++++.+|++++++++++++++|++++|+||||.+.|.++|.++|++ +++++++|++|+.+... +...+.+.
T Consensus 126 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~-----~~~~~~~~ 200 (352)
T PRK03321 126 PLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRD-----DDVPDGLE 200 (352)
T ss_pred cCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccC-----cCCCcHHH
Confidence 998778899999999999899999999999999999999999999987 59999999999765431 00001111
Q ss_pred cCCC-CccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHH
Q 013675 332 FSVQ-GVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEG 408 (438)
Q Consensus 332 ~~~~-gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g 408 (438)
.... .-.+++.+..|.+. .+..+|+++.+ +++.+........|. .. ..++.+++..+ ..+.
T Consensus 201 ~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~~-------------~s--~~~q~~a~~~l~~~~~ 264 (352)
T PRK03321 201 LVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPFS-------------VN--SLAQAAAIASLAAEDE 264 (352)
T ss_pred HHhhCCCEEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCCC-------------CC--HHHHHHHHHHhcCHHH
Confidence 1111 12355667889943 23348887764 444332211111111 01 11333332222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 013675 409 YLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+.+..++..+..+++.+.|++.
T Consensus 265 ~~~~~~~~~~~r~~~~~~L~~~ 286 (352)
T PRK03321 265 LLERVDAVVAERDRVRAALRAA 286 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 5555666666667788888765
No 209
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.71 E-value=8.6e-16 Score=153.79 Aligned_cols=223 Identities=18% Similarity=0.144 Sum_probs=157.3
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++++|.++++ + ++|+|+++++..++.++. ++| ++|+++.+.|..+...++..|++++.+|
T Consensus 71 ~lr~~ia~~~~~~~~~----i--~~t~G~~~~l~~~~~~l~-----~~g---d~vl~~~p~y~~~~~~~~~~g~~~~~~~ 136 (367)
T PRK02731 71 ELKAALAEKFGVDPER----I--ILGNGSDEILELLARAYL-----GPG---DEVIYSEHGFAVYPIAAQAVGAKPVEVP 136 (367)
T ss_pred HHHHHHHHHhCcCHHH----E--EEcCCHHHHHHHHHHHhc-----CCC---CEEEEecCCHHHHHHHHHHcCCeEEEec
Confidence 5666788888987765 6 899999999888877764 367 8999999999888888899999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
++ ++.+|++++++++++++++|++++|+||||.+.|.+++.++++.+ |+++++|++|..+..- . .. .+.++.
T Consensus 137 ~~-~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~---~-~~-~~~~~~ 210 (367)
T PRK02731 137 AK-DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRR---K-DY-EDGLEL 210 (367)
T ss_pred cc-CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccC---c-Cc-ccHHHH
Confidence 84 578999999999998999999999999999999999999999875 8999999998754420 0 00 001111
Q ss_pred CCC-CccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHH
Q 013675 333 SVQ-GVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGY 409 (438)
Q Consensus 333 ~~~-gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~ 409 (438)
... .-.+++.+..|.+ ..+..+|+++.++ ++.+........|. . ...+++++...+.. +.+
T Consensus 211 ~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~~~----------~-----~~~~~~~a~~~l~~~~~~ 274 (367)
T PRK02731 211 VAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP-EIIDALNRVRQPFN----------V-----NSLALAAAVAALDDDAFV 274 (367)
T ss_pred HhhcCCEEEEeeehHhhcCcccceeeeeCCH-HHHHHHHHccCCCC----------C-----CHHHHHHHHHHhCCHHHH
Confidence 111 1245566778973 2344579977654 33322111111110 0 12245555555543 446
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 410 LENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
++..++..++.+++.+.|++. |+.
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~-g~~ 298 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAEL-GLE 298 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 777778888888899998876 543
No 210
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.6e-16 Score=150.24 Aligned_cols=228 Identities=20% Similarity=0.252 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH--HHhhcC-c
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK--AAQYFN-I 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~--a~~~~G-i 248 (438)
..+++.+.+++++|. .. + +|+.+||+||.+++.+... +| ..||+...+|...++ +...++ +
T Consensus 36 ~~~~~e~~~ae~~g~-~a-----~--~Fv~sGT~aN~lal~~~~~-----~~---~~vi~~~~aHi~~~E~Ga~~~~~~~ 99 (342)
T COG2008 36 TTNALEQRIAELFGK-EA-----A--LFVPSGTQANQLALAAHCQ-----PG---ESVICHETAHIYTDECGAPEFFGGG 99 (342)
T ss_pred HHHHHHHHHHHHhCC-ce-----E--EEecCccHHHHHHHHHhcC-----CC---CeEEEeccccceecccCcHHHHcCC
Confidence 344444579999998 32 4 8999999999999999873 67 789999999988775 344554 3
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccC-------cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRN-------TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~-------t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
..+.+...++|.++++++++.|..+ +.++..+.. |..|++.| +++|.++||++|++||+||+--+-.++
T Consensus 100 ~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~v 178 (342)
T COG2008 100 QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALV 178 (342)
T ss_pred ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHH
Confidence 3333333469999999999988642 344444444 47899977 567888999999999999996444443
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccCCCCCchHHHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~ 397 (438)
. .| |+..--..++|++++.+.|.|..|.| + +++-+.++.+. .+.... .|+. -|-...+++.
T Consensus 179 a---lg---~~~~~~~~~~D~v~~~~tK~g~~~~g-A-iv~gn~~~~~~a~~~rK~--~Ggl--------~~k~r~laA~ 240 (342)
T COG2008 179 A---LG---VALKTIKSYVDSVSFCLTKGGGAPVG-A-IVFGNRDFAKRARRWRKR--AGGL--------MRKARFLAAQ 240 (342)
T ss_pred H---cC---CCHHHHHhhCCEEEEecccCCcceee-e-EEEcCHHHHHHHHHHHHH--hccc--------HhhhhHHHHH
Confidence 2 22 12222345789999999999877764 4 45555544332 221111 1221 2333345566
Q ss_pred HHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 398 ~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
|... +..+-+....++..++|++|++.+.+.||+++.
T Consensus 241 ~~~~--l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~ 277 (342)
T COG2008 241 GLYA--LEDDVWRLAADHANAMAARLAEGLEAKPGVKLA 277 (342)
T ss_pred HHHH--HhccHHHHHHHHHHHHHHHHHHhhhhcCCceec
Confidence 6554 555557777788888999999999988898764
No 211
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.70 E-value=2e-15 Score=154.05 Aligned_cols=230 Identities=16% Similarity=0.077 Sum_probs=159.9
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHH----HHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYM----RNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~----~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
++.+.+++++|.+. + ++|+|||+|+.+++.++.... ..++| ++||++..+|++...++...|+++
T Consensus 67 ~fe~~lA~~~g~~~------~--v~~~sGt~al~~aL~al~~~~~~~~~~~pG---d~VIv~~~t~~a~~~~v~~~G~~p 135 (438)
T PRK15407 67 AFEKKLAEFLGVRY------A--LLVNSGSSANLLAFSALTSPKLGDRALKPG---DEVITVAAGFPTTVNPIIQNGLVP 135 (438)
T ss_pred HHHHHHHHHhCCCe------E--EEECCHHHHHHHHHHHHhhccccccCCCCC---CEEEECCCCcHHHHHHHHHcCCEE
Confidence 44556888888753 3 789999999999998874211 11245 899999999999999999999999
Q ss_pred EEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 251 WRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 251 ~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+.++++. ++.+|+++++++++++|++|+++++ +|...|+++|.++|+++|+++++|+|++-+... -|.
T Consensus 136 v~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~----~g~---- 204 (438)
T PRK15407 136 VFVDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY----DGR---- 204 (438)
T ss_pred EEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhc----CCe----
Confidence 9999984 8899999999999999999999885 788899999999999999999999998644331 011
Q ss_pred CccCCCCccEEEeC--CCCCCCCCCCcEEEEEecccccccchhcccccCCC---------------------c---cC--
Q 013675 330 FDFSVQGVTSISVD--VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG---------------------L---YV-- 381 (438)
Q Consensus 330 ~~~~~~gvdsis~s--~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~---------------------~---~~-- 381 (438)
.....| |..++| ..|.+.++.| |+++++++++.+...... +|... . +.
T Consensus 205 -~~G~~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (438)
T PRK15407 205 -MTGTFG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHK 280 (438)
T ss_pred -eeeccC-ceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHH-HhCccccccccccccccccccccccccccccccc
Confidence 011112 444444 4465555444 888888877654321111 11000 0 00
Q ss_pred -CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 382 -SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 382 -~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
.....|.... +..+.+++.....+.+++..++..++++++.+.|+++++
T Consensus 281 ~~~~~~G~n~r--msel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~ 330 (438)
T PRK15407 281 YTYSHLGYNLK--ITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED 330 (438)
T ss_pred ccccccccccC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 0001121111 123445554445577899999999999999999988875
No 212
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.70 E-value=9.4e-16 Score=152.83 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=157.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.++++++.++++ + ++|+|+++++..++.++. + +.|+++.+.|+.+..+++..|++++.+
T Consensus 57 ~~lr~~ia~~~~~~~~~----i--~it~Ga~~~l~~~~~~~~------~----~~v~i~~P~y~~~~~~~~~~g~~~~~~ 120 (354)
T PRK06358 57 LELRKRIASFEQLDLEN----V--ILGNGATELIFNIVKVTK------P----KKVLILAPTFAEYERALKAFDAEIEYA 120 (354)
T ss_pred HHHHHHHHHHhCCChhh----E--EECCCHHHHHHHHHHHhC------C----CcEEEecCChHHHHHHHHHcCCeeEEE
Confidence 35666778888988876 7 899999999999887641 2 479999999999999999999999999
Q ss_pred eCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 254 PVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 254 ~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
|+++ ++.+| +++.+.+.++++++++++|+||||.+.+ +++|.++|+++++++++|++|..+... +...+
T Consensus 121 ~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~-----~~~~~ 194 (354)
T PRK06358 121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEE-----NETIS 194 (354)
T ss_pred eCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCC-----ccchh
Confidence 9974 46789 6776777778999999999999999987 778888899999999999999765431 00011
Q ss_pred CCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 329 PFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 329 ~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
.+.. ....-.++..|+.|... .+..+|+++..++.+..........|.. ...+.+++...+..
T Consensus 195 ~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~---------------~~~~q~~~~~~l~~ 259 (354)
T PRK06358 195 MINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSI---------------NTFADLAGQTLLDD 259 (354)
T ss_pred HHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCcc---------------hHHHHHHHHHHhcc
Confidence 1111 11112367778899954 5667999877555443222111111111 12234444444433
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 407 E-GYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 407 ~-g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. .+.+..+...+..+++.+.|++++++.
T Consensus 260 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 288 (354)
T PRK06358 260 KEYIKKTIQWIKEEKDFLYNGLSEFKGIK 288 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 3 346777777888899999998887754
No 213
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.70 E-value=5.3e-16 Score=163.35 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-HhhcCcEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLW 251 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-~~~~Gi~v~ 251 (438)
..+..+..|++||++..- .+|+|+|.+|..++.++.. +| +.|+++..+|-|+..+ ..+.|++.+
T Consensus 176 i~eAq~~AA~~fgAd~ty-------FlvNGTS~gn~a~i~a~~~-----~G---d~VLvdRN~HKSv~hgaLiLsGa~PV 240 (720)
T PRK13578 176 AKDAQKHAAKVFNADKTY-------FVLNGTSASNKVVTNALLT-----PG---DLVLFDRNNHKSNHHGALIQAGATPV 240 (720)
T ss_pred HHHHHHHHHHHhCCCceE-------EEeCChhHHHHHHHHHhcC-----CC---CEEEeecccHHHHHHHHHHHcCCeEE
Confidence 445556799999999863 7899999999999999873 78 9999999999999985 888899999
Q ss_pred EeeCCC-----CCccCHHH-----HHHhhccC----------cEEEEEecCCCCCccccCHHHHHHH-HHHcCCeEEEec
Q 013675 252 RVPVDK-----EFRADVKA-----IKKYINRN----------TVLIVGSAPGFPHGIIDPIQELGEL-ALSHGTCLHVDL 310 (438)
Q Consensus 252 ~v~~~~-----~~~~d~~~-----Le~~I~~~----------t~~vv~~~~~~~tG~iddi~~I~~l-a~~~~i~lhVD~ 310 (438)
+++... -+.++.+. ++++|.++ .+++++++||+ .|.+.|+++|+++ ++.++ ++|||+
T Consensus 241 Yl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDE 318 (720)
T PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDS 318 (720)
T ss_pred EeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeC
Confidence 997653 23456544 89888765 48999999988 8999999999998 68888 999999
Q ss_pred cccchhhhhhhhcCCCCCCCccCCCCcc----EEEeCCCCCCCCCCCcEEEEEeccccc-------ccchhcccccCCCc
Q 013675 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVT----SISVDVHKYGLAPKGTSVVLYRNREIR-------KHQFVAVTEWSGGL 379 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~~~~~~gvd----sis~s~hK~~~~p~g~g~l~~r~~~~~-------~~~~~~~~~~~g~~ 379 (438)
|||+... |..... ..|+.. ...|+| +++-|+||.+.+-..++++.+++..+. ...+.....
T Consensus 319 Ahgah~~-F~p~~~-~~p~~a-l~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~----- 390 (720)
T PRK13578 319 AWVGYEQ-FIPMMA-DCSPLL-LELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFM----- 390 (720)
T ss_pred cchhhhc-cCcccc-cCChhh-hhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHH-----
Confidence 9987653 321100 022222 245778 999999999988888999988765322 011100000
Q ss_pred cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHh-hcCCCccc
Q 013675 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL-VLFPMFLP 435 (438)
Q Consensus 380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L-~~~~g~~~ 435 (438)
.....|.+..++|++-.+-+.+-.+.-++..++..+.+..+++.| +.++++++
T Consensus 391 ---m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~ 444 (720)
T PRK13578 391 ---LHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRP 444 (720)
T ss_pred ---HHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 001123334556666665554433223567777888888888888 66676654
No 214
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.70 E-value=1e-15 Score=152.79 Aligned_cols=220 Identities=18% Similarity=0.154 Sum_probs=158.3
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~ 244 (438)
..|....+|+ .++++-|... .+.+++|..|+..++.++.. +| ++|+++...|....+.++
T Consensus 53 gnPt~~~le~----~la~Le~g~~--------a~~~~SGmaAi~~~l~~ll~-----~G---d~iv~~~~~Y~~t~~~~~ 112 (386)
T PF01053_consen 53 GNPTVRALEQ----RLAALEGGED--------ALLFSSGMAAISAALLALLK-----PG---DHIVASDDLYGGTYRLLE 112 (386)
T ss_dssp C-HHHHHHHH----HHHHHHT-SE--------EEEESSHHHHHHHHHHHHS------TT---BEEEEESSSSHHHHHHHH
T ss_pred ccccHHHHHH----HHHHhhcccc--------eeeccchHHHHHHHHHhhcc-----cC---CceEecCCccCcchhhhh
Confidence 3455555555 5788888742 27889999999999988763 67 899999998877655554
Q ss_pred ----hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC-CeEEEeccccchhhhh
Q 013675 245 ----YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG-TCLHVDLCLGGFVLPF 319 (438)
Q Consensus 245 ----~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~-i~lhVD~a~gg~~~pf 319 (438)
.+|+++..++.+ |+++++++++++|++|++..|+||+..+.||++|+++|+++| ++++||.+++..+.
T Consensus 113 ~~l~~~gv~v~~~d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-- 185 (386)
T PF01053_consen 113 ELLPRFGVEVTFVDPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-- 185 (386)
T ss_dssp HCHHHTTSEEEEESTT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT--
T ss_pred hhhcccCcEEEEeCch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee--
Confidence 459999999764 899999999999999999999999999999999999999998 99999999875432
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC---cEEEEEec-ccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG---TSVVLYRN-REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g---~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
++....|+|++..|..||+ ++.+ .|+++.++ +++........ ...|. -.. ..
T Consensus 186 ----------~~pL~~GaDivv~S~TKyl-~Ghsdv~~G~vv~~~~~~~~~~l~~~~-~~~G~----------~~~--p~ 241 (386)
T PF01053_consen 186 ----------QNPLELGADIVVHSATKYL-SGHSDVMGGAVVVNGSSELYDRLREFR-RLLGA----------TLS--PF 241 (386)
T ss_dssp ----------C-GGGGT-SEEEEETTTTT-TTSSSE-EEEEEESSHHHHHHHHHHHH-HHHT-----------B----HH
T ss_pred ----------eccCcCCceEEEeeccccc-cCCcceeeEEEEECchhhhhhhhcchh-hhcCc----------cch--HH
Confidence 2334458999999999995 4444 67777766 33322211111 11111 111 12
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPL 437 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l 437 (438)
.+|..+ .|.+.+.-+.++..++|+.+++.|++.|.++-+.
T Consensus 242 da~ll~--rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~ 281 (386)
T PF01053_consen 242 DAWLLL--RGLRTLPLRMERQNENAEALAEFLEEHPKVKRVY 281 (386)
T ss_dssp HHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred HHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 556555 4678889999999999999999999999886443
No 215
>PRK06855 aminotransferase; Validated
Probab=99.70 E-value=3.9e-15 Score=152.31 Aligned_cols=243 Identities=14% Similarity=0.047 Sum_probs=162.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
++|....+..++.+.+.+++.+..|. ++++ | ++|+|+++++.+++. +. .+| |+|+++.++|+.
T Consensus 67 ~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~----I--~it~G~~~al~~~~~-l~-----~~G---d~Vlv~~P~Y~~ 131 (433)
T PRK06855 67 YGYCPTKGVLETREFLAELNNKRGGAQITPDD----I--IFFNGLGDAIAKIYG-LL-----RRE---ARVIGPSPAYST 131 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCHhH----E--EEcCcHHHHHHHHHH-hc-----CCC---CeEEEeCCCCch
Confidence 45656677788888888888887665 4444 6 899999999988864 33 367 899999999998
Q ss_pred HHHHH-hhcCcEEEEeeCCC--CCccCHHHHHHhhc--cCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEec
Q 013675 239 YDKAA-QYFNIKLWRVPVDK--EFRADVKAIKKYIN--RNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDL 310 (438)
Q Consensus 239 ~~~a~-~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~--~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~ 310 (438)
+..+. ...|++++.+|+++ ++.+|+++|++++. ++++++++++|+||||.+.+ +++|.++|++||+++++|.
T Consensus 132 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De 211 (433)
T PRK06855 132 HSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDE 211 (433)
T ss_pred HHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 76543 35589999999874 46799999999996 45789999999999999987 5678888999999999999
Q ss_pred cccchhhhhhhhcCCCCCCC-ccCCCCccEEEeCCCCCCC-CCCCcEEEEEec----ccccccchhcccccCCCccCCCC
Q 013675 311 CLGGFVLPFAKKLGYPIPPF-DFSVQGVTSISVDVHKYGL-APKGTSVVLYRN----REIRKHQFVAVTEWSGGLYVSPT 384 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~-~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~----~~~~~~~~~~~~~~~g~~~~~~~ 384 (438)
+|+.+... +.+.+++ .....+-.++..|..|.+. .+..+|+++..+ +.+....-....... ..
T Consensus 212 ~Y~~l~~~-----~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~------~~ 280 (433)
T PRK06855 212 IYNNIVYN-----GKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM------IE 280 (433)
T ss_pred cccccccC-----CCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc------cc
Confidence 99876431 1001111 1111122367788899963 556799988732 111110000000000 00
Q ss_pred ccCCCCCchHHHHHHHHHHHc----HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 385 VAGSRPGGLIAGAWAALMSLG----QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 385 ~~gsr~~~~ia~~~aal~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. + +. ...+.++...+. .+.+++..+...+..+.+.+.|++++++.
T Consensus 281 ~-~--~~--~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~ 329 (433)
T PRK06855 281 V-C--ST--TLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK 329 (433)
T ss_pred c-C--CC--hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 0 0 00 113444444442 23456667777888888999998877654
No 216
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.69 E-value=2.4e-15 Score=153.87 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=155.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY 245 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~ 245 (438)
..+..++.+.+.+++....+ ++++ + ++|+|+++++.+++.++.+ +| |.|+++.++|+.+...++.
T Consensus 120 ~~g~~~lr~~ia~~~~~~~~-~~~~----I--iit~G~~~al~~~~~~l~~-----pg---d~Vlv~~P~y~~~~~~~~~ 184 (431)
T PRK15481 120 APVSPELHAWAARWLRDDCP-VAFE----I--DLTSGAIDAIERLLCAHLL-----PG---DSVAVEDPCFLSSINMLRY 184 (431)
T ss_pred cCCCHHHHHHHHHHHhhccC-CcCe----E--EEecCcHHHHHHHHHHhCC-----CC---CEEEEeCCCcHHHHHHHHH
Confidence 33444455555555443222 2233 6 8999999999999998763 77 8999999999999999999
Q ss_pred cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEe-cCCCCCccccCHH---HHHHHHHHc-CCeEEEeccccchhhhhh
Q 013675 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGS-APGFPHGIIDPIQ---ELGELALSH-GTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~-~~~~~tG~iddi~---~I~~la~~~-~i~lhVD~a~gg~~~pf~ 320 (438)
+|++++.+|+++++ +|+++|++++++++++++++ +|+||||.+.+.+ +|.++|+++ ++++++|.+|+.+...
T Consensus 185 ~g~~~~~v~~~~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~-- 261 (431)
T PRK15481 185 AGFSASPVSVDAEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS-- 261 (431)
T ss_pred cCCeEEeeccCCCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC--
Confidence 99999999997654 89999999998888888876 9999999998875 999999999 9999999999866421
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa 400 (438)
++ .+.+... ..-.++..++.|....+..+|+++.. +++............. .....++.++
T Consensus 262 ---~~-~~~~~~~-~~~vi~~~SfSK~~~~GlRiG~~i~~-~~~~~~~~~~~~~~~~-------------~~s~~~q~a~ 322 (431)
T PRK15481 262 ---PY-HSVIPQT-TQRWALIRSVSKALGPDLRLAFVASD-SATSARLRLRLNSGTQ-------------WVSHLLQDLV 322 (431)
T ss_pred ---CC-CCCCcCC-CCCEEEEeeeccccCCCceeEEEeCC-HHHHHHHHHHHhcccc-------------CCCHHHHHHH
Confidence 11 1112111 12347777889995544558886654 4333221111110000 0011234444
Q ss_pred HHHHcH----HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 401 LMSLGQ----EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 401 l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
...+.. +.+++..+...+..+.+.+.|++. +++
T Consensus 323 ~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~ 359 (431)
T PRK15481 323 YACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA 359 (431)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 443422 224566777788888888888775 443
No 217
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.69 E-value=3.2e-15 Score=142.16 Aligned_cols=237 Identities=19% Similarity=0.195 Sum_probs=164.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----H
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----Y 239 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~ 239 (438)
-..|-...+|+ .++.|=|.- .++.+++|..|+.+|+..+.. .| |+|+.+..-|.. +
T Consensus 59 i~NPT~~vlE~----RiAaLEGG~--------aa~a~aSG~AA~~~ai~~la~-----aG---D~iVss~~LYGGT~~lf 118 (426)
T COG2873 59 IMNPTTDVLEE----RIAALEGGV--------AALAVASGQAAITYAILNLAG-----AG---DNIVSSSKLYGGTYNLF 118 (426)
T ss_pred ccCchHHHHHH----HHHHhhcch--------hhhhhccchHHHHHHHHHhcc-----CC---CeeEeeccccCchHHHH
Confidence 34466666666 466665543 337889999999999998773 78 999988886644 5
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
....+.+|++++.|+.+ |++.++++|++||++|++..-.||-+.+-|+++|+++||++|++++||...+..++
T Consensus 119 ~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-- 191 (426)
T COG2873 119 SHTLKRLGIEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-- 191 (426)
T ss_pred HHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee--
Confidence 56678889999999875 79999999999999999999999999999999999999999999999999876433
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEeccccc---ccchhc----ccccCCCccCCC-C-----
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIR---KHQFVA----VTEWSGGLYVSP-T----- 384 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~---~~~~~~----~~~~~g~~~~~~-~----- 384 (438)
+.|+ .-|+|+++-|..||. ++.| +|.+++-..... ...|.. .+.|.|-.|... .
T Consensus 192 -------~rP~---~hGADIVvHS~TK~i-gGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~ 260 (426)
T COG2873 192 -------CRPI---EHGADIVVHSATKYI-GGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFI 260 (426)
T ss_pred -------cchh---hcCCCEEEEeecccc-cCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHH
Confidence 2234 458999999999993 4433 444555332211 111110 111222211110 0
Q ss_pred ----ccCCC-CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 385 ----VAGSR-PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 385 ----~~gsr-~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
..+-| .|+.+...-+-+-..|.+-+.=+.++..++|..+++.|+++|.+.-+.|
T Consensus 261 ~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~Y 319 (426)
T COG2873 261 IKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNY 319 (426)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeec
Confidence 00111 1222222222233357888888999999999999999999998765443
No 218
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.69 E-value=1.4e-15 Score=150.82 Aligned_cols=237 Identities=19% Similarity=0.218 Sum_probs=157.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC---cCcHHHH
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA---HSAYDKA 242 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~---h~s~~~a 242 (438)
...+.++|.-+++.++++||+++++ |.+-+-..+|+.|++.++.++.+ +| |+|+..+.. |.+.-..
T Consensus 61 ~~~id~iE~la~~ra~~lF~~~~~~---w~anvqp~SGs~An~av~~aLl~-----pG---D~Im~l~l~~GGHlshg~~ 129 (399)
T PF00464_consen 61 CEYIDEIEELAIERAKELFGAEPKE---WYANVQPHSGSQANLAVYMALLK-----PG---DTIMGLSLPHGGHLSHGSS 129 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHT-STTT---EEEE---SSHHHHHHHHHHHHT------TT----EEEEEEGGGT--GGGT-T
T ss_pred cchhhHHHHHHHHHHHHHhCCCccc---ceEEeecCCchHHHHHHHHHHHh-----hc---CcEEecChhhccccccccc
Confidence 4557788999999999999999655 12224568999999999999884 78 888765543 5443333
Q ss_pred Hhh-------cCcEEEEeeCCC-CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 243 AQY-------FNIKLWRVPVDK-EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 243 ~~~-------~Gi~v~~v~~~~-~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
... ...+.+..++|+ ++.+|.+++++.+.+ +|++|++..-++| ...|++++.++|++.|+.+++|.++-
T Consensus 130 ~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~ 207 (399)
T PF00464_consen 130 VNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHI 207 (399)
T ss_dssp TSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTT
T ss_pred ccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEeccccc
Confidence 222 234788888984 899999999998875 7999988776654 46789999999999999999999987
Q ss_pred chhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEe-------------cccccccchhcccccCCCc
Q 013675 314 GFVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR-------------NREIRKHQFVAVTEWSGGL 379 (438)
Q Consensus 314 g~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r-------------~~~~~~~~~~~~~~~~g~~ 379 (438)
.+++. .|. .| |+ ..+|++++++||.+.||.| |+++++ ++++.+..-.
T Consensus 208 ~GLIa----~g~-~~~P~----~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~--------- 268 (399)
T PF00464_consen 208 AGLIA----GGL-FPNPF----PYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDS--------- 268 (399)
T ss_dssp HHHHH----TTS-S--GC----CTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHH---------
T ss_pred cccee----hhe-ecCcc----ccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhcc---------
Confidence 77763 232 21 33 3489999999999989887 888888 2222211100
Q ss_pred cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..-|...|+..-..++++..+++......+++..+++.++|+.|++.|.+. |+++
T Consensus 269 avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v 323 (399)
T PF00464_consen 269 AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKV 323 (399)
T ss_dssp HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EE
T ss_pred ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEE
Confidence 011233333444457788888887766778999999999999999999986 6665
No 219
>PRK09148 aminotransferase; Validated
Probab=99.69 E-value=1.1e-14 Score=147.73 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=158.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCC--CC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNK--EK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~--~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
.|....+..++.+.+.+++.+.+|.+ ++ + + ++|+|+++++.+++.++.+ +| ++|+++.++|+.
T Consensus 63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----I--~it~G~~~al~~~~~~l~~-----~g---d~Vl~~~P~y~~ 128 (405)
T PRK09148 63 RYSASKGIPGLRRAQAAYYARRFGVKLNPDTQ----V--VATLGSKEGFANMAQAITA-----PG---DVILCPNPSYPI 128 (405)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----E--EEcCChHHHHHHHHHHhcC-----CC---CEEEEcCCCCcc
Confidence 34445567788888888888777753 43 3 6 8999999999999988763 67 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCC--CccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecccc
Q 013675 239 YDKAAQYFNIKLWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~g 313 (438)
+...+...|++++.+|++++ +..+++++.+...++++++++++|+||||.+.+. ++|.++|+++|+++++|++|+
T Consensus 129 ~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~ 208 (405)
T PRK09148 129 HAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYS 208 (405)
T ss_pred cHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 99999999999999999753 3334444444444688999999999999999885 678889999999999999998
Q ss_pred chhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhccc--ccCCCccCCCCccCC
Q 013675 314 GFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVT--EWSGGLYVSPTVAGS 388 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~--~~~g~~~~~~~~~gs 388 (438)
.+... .. ..+.+. . ...+..++..++.|... .+..+|+++. ++++.+....... .|.. +
T Consensus 209 ~~~~~--~~---~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~----------~ 272 (405)
T PRK09148 209 EIYFD--GN---PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGA----------F 272 (405)
T ss_pred hhhcC--CC---CCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHHHHHHHHHHhccCC----------C
Confidence 66431 10 011111 1 11234566788999843 3345899765 4444332111110 1100 0
Q ss_pred CCCchHHHHHHHHHHH--cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 389 RPGGLIAGAWAALMSL--GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 389 r~~~~ia~~~aal~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.. ...++...+ +.+..++..+.+.+..+++.+.|++.
T Consensus 273 ---~~--~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 311 (405)
T PRK09148 273 ---TP--IQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA 311 (405)
T ss_pred ---hH--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 223333333 23445666777888888898998875
No 220
>PRK07049 methionine gamma-lyase; Validated
Probab=99.68 E-value=4.4e-15 Score=151.09 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH----
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA---- 242 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a---- 242 (438)
|....+|+ .++++.|.+. + ++++||++|+.+++.++.+ +| ++|+++.+.|..+...
T Consensus 83 Pt~~~Le~----~lA~leg~~~------~--iv~~sG~~Ai~~~l~al~~-----~G---d~Vv~~~p~Y~~~~~~~~~~ 142 (427)
T PRK07049 83 PNSEIVED----RLAVYEGAES------A--ALFSSGMSAIATTLLAFVR-----PG---DVILHSQPLYGGTETLLAKT 142 (427)
T ss_pred cCHHHHHH----HHHHHhCCCc------E--EEEccHHHHHHHHHHHHhC-----CC---CEEEEcCCCcccHHHHHHHH
Confidence 44444444 6888888652 3 7899999999998888763 77 8999999999988665
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhc-----cCcEEEEEecCCCCCccccCHHHHHHHHHH------cCCeEEEecc
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDPIQELGELALS------HGTCLHVDLC 311 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~iddi~~I~~la~~------~~i~lhVD~a 311 (438)
+..+|++++.++. ..|.++++++++ ++|++|++++|+||||.+.|+++|.+++++ +++++++|.+
T Consensus 143 l~~~Gi~~v~~~~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 143 FRNFGVGAVGFAD----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred HHhcCcEEEEEeC----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 3567998777762 246778877774 479999999999999999999999999988 8999999999
Q ss_pred ccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC--CcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675 312 LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK--GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr 389 (438)
|.++.. ..++ ..|+|++..|..|+..+.. -+|+++ .++++.+........+ | .-
T Consensus 219 y~~~~~---------~~pl---~~g~divv~S~SK~~gG~~glr~G~vv-~~~~l~~~l~~~~~~~-g----------~~ 274 (427)
T PRK07049 219 LLGPVF---------QKPL---EHGADLSVYSLTKYVGGHSDLVAGAVL-GRKALIRQVRALRSAI-G----------TQ 274 (427)
T ss_pred cccccc---------CCcc---ccCCCEEEEcCceeecCCCCcEEEEEE-CCHHHHHHHHHHHHhc-C----------CC
Confidence 865432 1122 3368999999999965433 367655 4444433221111111 1 11
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
.. ...+|++++.+ +.+..++++..++++.+.+.|+++|+++-++|
T Consensus 275 ls--~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~y 319 (427)
T PRK07049 275 LD--PHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKVEKLHY 319 (427)
T ss_pred CC--HHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 11 23677776544 56778888889999999999999998875544
No 221
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.68 E-value=2e-15 Score=148.99 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++++++++|.++++ + ++|+|+++++..+..++ .+| .|+++.+.|..+...++..|++++.+
T Consensus 50 ~~lr~~la~~~~~~~~~----i--~~t~G~~~~i~~~~~~l------~~g----~vl~~~p~y~~~~~~~~~~g~~~~~~ 113 (330)
T TIGR01140 50 DELRAAAAAYYGLPAAS----V--LPVNGAQEAIYLLPRLL------APG----RVLVLAPTYSEYARAWRAAGHEVVEL 113 (330)
T ss_pred HHHHHHHHHHhCCChhh----E--EECCCHHHHHHHHHHHh------CCC----eEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence 45666788888987665 6 89999999988865442 133 58999999999999999999999988
Q ss_pred eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+ |++++++++ ++++++++++|+||||.+.| +++|+++|+++|+++++|++|+.+... .. . .
T Consensus 114 ~-------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~--~--~ 177 (330)
T TIGR01140 114 P-------DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----AS--L--A 177 (330)
T ss_pred C-------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cc--h--h
Confidence 7 899999998 46778999999999999988 667788889999999999999766421 00 1 1
Q ss_pred cc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
+. ...+-+++..+++|++. .+.++|+++.+++ +..........|. . ...++.++...+...+
T Consensus 178 ~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~~~-------------~--s~~~q~~~~~~l~~~~ 241 (330)
T TIGR01140 178 PQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LLARLREALGPWT-------------V--NGPARAAGRAALADTA 241 (330)
T ss_pred hHhccCCCEEEEEecchhhcCchhhhhheeCCHH-HHHHHHhcCCCCC-------------c--hHHHHHHHHHHHhchH
Confidence 11 11234688889999943 2244798777543 3332211111111 0 1123444444444333
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 409 -YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 409 -~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.++..++..++.+++.+.|++++.++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~L~~~~~~~ 268 (330)
T TIGR01140 242 WQAATRARLAAERARLAALLARLGGLE 268 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 36667888889999999998886554
No 222
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.68 E-value=1.2e-14 Score=148.80 Aligned_cols=186 Identities=14% Similarity=0.212 Sum_probs=137.5
Q ss_pred cchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 165 IFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
...|..++.+++.+++.+.+| .++++ + ++|+|+++++.+++.++.+ +| |.|+++.+.|+.+.
T Consensus 93 ~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~----I--vit~G~t~al~~l~~~l~~-----pG---D~Vlv~~P~Y~~f~ 158 (447)
T PLN02607 93 DYHGLKSFRQAMASFMEQIRGGKARFDPDR----I--VLTAGATAANELLTFILAD-----PG---DALLVPTPYYPGFD 158 (447)
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCcCHHH----e--EEcCChHHHHHHHHHHhCC-----CC---CEEEEcCCCCcchH
Confidence 345777888888888888776 34444 6 8999999999998888763 77 89999999999998
Q ss_pred HHHh-hcCcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675 241 KAAQ-YFNIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV 308 (438)
Q Consensus 241 ~a~~-~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV 308 (438)
..+. ..|++++.|++++ ++.+|++++++++++ +++++++++|+||||.+.+ +++|.++|+++|+++++
T Consensus 159 ~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 159 RDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred HHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 8777 4799999999874 467999999999874 6899999999999999987 67888999999999999
Q ss_pred eccccchhh---hhhhhcCCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEeccccc
Q 013675 309 DLCLGGFVL---PFAKKLGYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIR 365 (438)
Q Consensus 309 D~a~gg~~~---pf~~~~g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~ 365 (438)
|++|+.... +|..-... ++..+. ....--.+..+..|.++ .+..+|+++..++.+.
T Consensus 239 DEiYa~~~f~~~~f~S~~s~-~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~ 299 (447)
T PLN02607 239 DEIYSGSVFSASEFVSVAEI-VEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV 299 (447)
T ss_pred eccccccccCCCCcccHHHH-HhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHH
Confidence 999986543 11100000 000000 00112355678889843 5566899887555543
No 223
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=5.3e-15 Score=148.56 Aligned_cols=230 Identities=16% Similarity=0.134 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC-eEEecCCCcCcHHH
Q 013675 167 QSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP-EMIIPVSAHSAYDK 241 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~-~Viv~~~~h~s~~~ 241 (438)
++..++.+.+.+++.+.+| .++++ | ++|+|+++++..++.+... +| + +|+++.++|+.+..
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~----I--~it~Ga~~al~~~~~~~~~-----~g---~~~Vlv~~P~y~~~~~ 131 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPAN----I--SVGNGSDELIRSLLIATCL-----GG---EGSILVAEPTFSMYGI 131 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHH----E--EEcCChHHHHHHHHHHHcC-----CC---CCeEEEcCCChHHHHH
Confidence 5666666666666655432 55554 6 8999999999887776542 44 4 79999999999999
Q ss_pred HHhhcCcEEEEeeCCC-CCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEeccccch
Q 013675 242 AAQYFNIKLWRVPVDK-EFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALS-HGTCLHVDLCLGGF 315 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~-~~i~lhVD~a~gg~ 315 (438)
+++.+|++++.+|+++ ++.+|+++++++++ ++++++++++|+||||.+.+.+++.++++- +++++++|++|..+
T Consensus 132 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~ 211 (374)
T PRK02610 132 LAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEF 211 (374)
T ss_pred HHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecccccc
Confidence 9999999999999876 58999999999987 479999999999999999887766666532 48999999999765
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchH
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLI 394 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~i 394 (438)
... .. .+.+. .... .++..|+.|.+ ..+..+|+++. ++++.+........|.. + .
T Consensus 212 ~~~--~~----~~~~~-~~~~-~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~~------------~---~ 267 (374)
T PRK02610 212 SQT--TL----VGELA-QHPN-WVILRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPYNL------------P---S 267 (374)
T ss_pred Ccc--ch----HHHHh-cCCC-EEEEEecchhccCcccceeeeec-CHHHHHHHHHhcCCCCC------------C---H
Confidence 310 00 11111 1112 35677889995 45567999775 44443322111111110 1 1
Q ss_pred HHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 395 AGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 395 a~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..+.++...++. +.+.+..++..+..+.+.+.|+++++++
T Consensus 268 ~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 308 (374)
T PRK02610 268 FSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLR 308 (374)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 123333333332 3445555555566777888888776654
No 224
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.68 E-value=4.6e-15 Score=148.75 Aligned_cols=249 Identities=11% Similarity=0.080 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhhccC------CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHH
Q 013675 144 HFSLINEACSMFAHTN------PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY 217 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n------~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~ 217 (438)
+.+.+.+++..+.... ........+..+..+++++.+++++|.+.. ++.++|+.++...+..+.
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~--------l~~~sG~~a~~~~~~~~~-- 92 (370)
T PRK05937 23 LVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEA--------FIVPSGYMANLGLCAHLS-- 92 (370)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeE--------EEECChHHHHHHHHHHhC--
Confidence 5556666666664322 222333344567778889999999999632 445555567654333321
Q ss_pred HHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC
Q 013675 218 MRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP 291 (438)
Q Consensus 218 ~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd 291 (438)
++| +.|++....|.+...+++......+.++ ..|+++|+++++ +++.+|+++++++++|.+.|
T Consensus 93 ---~~~---d~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p 161 (370)
T PRK05937 93 ---SVT---DYVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP 161 (370)
T ss_pred ---CCC---CEEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC
Confidence 244 7788889999999998887643333332 358999999987 34678889999999999999
Q ss_pred HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhc
Q 013675 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371 (438)
Q Consensus 292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~ 371 (438)
+++|.++|+++|+++|||++++.+.++.. -.|. . ........+.+..+.+|. ++|.|+|++.. ++ ........
T Consensus 162 l~eI~~l~~~~~~~livDea~~~G~~g~~-g~g~-~--~~~~~~~~~~~~~tlsK~-~g~~G~~vl~~-~~-~~~~~~~~ 234 (370)
T PRK05937 162 LEQIIALSKKYHAHLIVDEAHAMGIFGDD-GKGF-C--HSLGYENFYAVLVTYSKA-LGSMGAALLSS-SE-VKQDLMLN 234 (370)
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCC-CCch-H--HhhCCCCCcEEEEechhh-hhcCceEEEcC-HH-HHHHHHHh
Confidence 99999999999999999999975444310 0000 0 001111223456677798 78888776543 22 21111000
Q ss_pred ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
...+. ..++-+...++++.++++.+...+ +...++..++.+++.+.|..
T Consensus 235 ~~~~~--------~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~ 283 (370)
T PRK05937 235 SPPLR--------YSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSS 283 (370)
T ss_pred CCCCe--------ecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCC
Confidence 00110 111112223556777787775555 45667888899999988865
No 225
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.67 E-value=5.6e-15 Score=148.01 Aligned_cols=231 Identities=15% Similarity=0.089 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHh
Q 013675 167 QSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQ 244 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~ 244 (438)
++...+.+.+.+++.+.+|. ++++ + ++|+|+++++.+++.++.+ +| ++|+++.++|+.+..+++
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~~~~----I--~it~G~~~~l~~~~~~~~~-----~g---d~v~v~~P~y~~~~~~~~ 130 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLTVEN----V--WAANGSNEILQQLLQAFGG-----PG---RTALGFVPSYSMHPIIAR 130 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCChhh----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHHHHHH
Confidence 45566777777777776664 4444 6 8999999999999998863 77 899999999999999999
Q ss_pred hcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 245 YFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
..|++++.+|.++++.+|++++++++++ +++++++++|+||||.+.+.+++.++++.+++++++|++|+.+...
T Consensus 131 ~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~----- 205 (368)
T PRK03317 131 GTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRS----- 205 (368)
T ss_pred hcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhccc-----
Confidence 9999999998877889999999999974 6888999999999999999999999999999999999999865421
Q ss_pred CCCCCCCcc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHH
Q 013675 324 GYPIPPFDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401 (438)
Q Consensus 324 g~~~p~~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal 401 (438)
|. .+.... ....-.++..++.|.+. .+..+|+++.+ +++..........|. .+ ..++.++.
T Consensus 206 ~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~~~----------~s-----~~~~~a~~ 268 (368)
T PRK03317 206 GT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVDALRLVRLPYH----------LS-----AVTQAAAR 268 (368)
T ss_pred CC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC-HHHHHHHHhcCCCCC----------CC-----HHHHHHHH
Confidence 10 001111 01112356668899843 34557887754 444332211111111 01 11222322
Q ss_pred HHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 402 MSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 402 ~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..+. .+.+.+..++..+..+++.+.|++. |++
T Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 301 (368)
T PRK03317 269 AALRHADELLASVAALRAERDRVVAWLREL-GLR 301 (368)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 2232 2345556666777778888888765 443
No 226
>PRK08175 aminotransferase; Validated
Probab=99.67 E-value=1.4e-14 Score=146.65 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=162.7
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
...|....+..++.+.+.+++.+.+|.+ +++ ++ ++|+|+++++..++.++. .+| ++|+++.++|+
T Consensus 60 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i--~~t~G~~~~l~~~~~~~~-----~~g---d~Vlv~~P~y~ 126 (395)
T PRK08175 60 THGYSTSRGIPRLRRAISRWYQDRYDVDIDPES---EA--IVTIGSKEGLAHLMLATL-----DHG---DTVLVPNPSYP 126 (395)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cE--EEccCcHHHHHHHHHHhC-----CCC---CEEEEcCCCCc
Confidence 3445556677888888888888877764 331 25 899999999998887765 377 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEecc
Q 013675 238 AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLC 311 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a 311 (438)
.+...++..|++++.+|+++++ .+.++++++++ ++++++++++|+||||.+.+. ++|.++|+++|+++++|.+
T Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~ 205 (395)
T PRK08175 127 IHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLA 205 (395)
T ss_pred chHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 9999899999999999997643 35888888886 378999999999999999886 7899999999999999999
Q ss_pred ccchhhhhhhhcCCCCCCCc-c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 312 LGGFVLPFAKKLGYPIPPFD-F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 312 ~gg~~~pf~~~~g~~~p~~~-~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
|+.+.. + +...+++. . ...+..+++.++.|.+. ....+|+++. ++++.+.......... .+
T Consensus 206 y~~l~~---~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~----------~~ 269 (395)
T PRK08175 206 YADIVY---D--GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHD----------YG 269 (395)
T ss_pred hHhhcc---C--CCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHHHHHHHHhhcc----------cC
Confidence 976542 1 11011111 1 11234466788999952 3345788765 4444432211110000 00
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
-+.....++..++.. ....+++..+...+.++++.+.|+++ ++.
T Consensus 270 ~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 313 (395)
T PRK08175 270 TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM 313 (395)
T ss_pred CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 001111122233321 23445666777778888899998876 443
No 227
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.67 E-value=1.5e-14 Score=146.32 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=141.1
Q ss_pred HHHHHHHHHhhcc-CCCCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675 146 SLINEACSMFAHT-NPLHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (438)
Q Consensus 146 ~~~~~~~~~~~~~-n~~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~ 222 (438)
+.+.+++...... ....|....|..++.+.+.+++.+..+. ++++ +..++|+|+++|+.++++++.. ..+
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~----i~v~iT~Ga~~al~~~~~~l~~---~~p 119 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGR----VATVQTPGGTGALRVGADFLKR---AFP 119 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCe----EEEEecCCccHHHHHHHHHHHH---hCC
Confidence 4455555544332 2234666778788888888777655332 3332 2237899999999999876531 137
Q ss_pred CCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HHH
Q 013675 223 GITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQE 294 (438)
Q Consensus 223 G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~~ 294 (438)
| |+|++++++|+.+..+++..|++++.+|+ ++ ++.+|++++++++. +++.+++.++|+||||.+.+ +++
T Consensus 120 G---d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~ 196 (396)
T PRK09257 120 D---AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDE 196 (396)
T ss_pred C---CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence 7 99999999999999999999999999998 33 57899999999886 34678888999999999976 678
Q ss_pred HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEE
Q 013675 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLY 359 (438)
Q Consensus 295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~ 359 (438)
|+++|++||+++++|.+|..+....-.... .++.++... .-.+++.|+.|.... +..+|++++
T Consensus 197 l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~-~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 197 LAELLKERGLIPFLDIAYQGFGDGLEEDAY-GLRAFAAAG-LELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred HHHHHHhCCcEEEEeccccccccchHHHHH-HHHHHHhcC-CcEEEEEEcCCcCccccccceeEEE
Confidence 889999999999999999765420000000 000111111 124677889999432 455898774
No 228
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.66 E-value=5e-15 Score=148.00 Aligned_cols=240 Identities=16% Similarity=0.083 Sum_probs=157.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
|..+|.+.++|++ +++++|.+. + +.|++||.|+.++..+.. ++| ++| +...|..-..+
T Consensus 67 yag~~s~~~lE~~----va~~~G~~~------a--v~v~sGT~Al~ll~~l~l-----~pG---DeV--psn~~f~Tt~a 124 (450)
T TIGR02618 67 YAGSRNFYHLERT----VRELYGFKY------V--VPTHQGRGAENLLSQIAI-----KPG---DYV--PGNMYFTTTRY 124 (450)
T ss_pred hcCCCcHHHHHHH----HHHHHCCCe------E--EEcCCHHHHHHHHHHhCC-----CCc---CEE--CCceeHHHHHH
Confidence 6677888888875 788889874 2 899999999886532222 366 655 66777665555
Q ss_pred -HhhcCcEEEEeeCC---------C-CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccc---cCHHHHHHHHHHcC
Q 013675 243 -AQYFNIKLWRVPVD---------K-EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GII---DPIQELGELALSHG 303 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~---------~-~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~i---ddi~~I~~la~~~~ 303 (438)
..+.|...+.++.+ + +|.+|+++++++|+++ +.+|++..++|.. |.. +++++|.++|++||
T Consensus 125 hIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~G 204 (450)
T TIGR02618 125 HQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHG 204 (450)
T ss_pred HHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcC
Confidence 68888877666543 2 6889999999999863 4467777777755 677 66899999999999
Q ss_pred CeEEEeccccchhhhhhh--hcCC-CCCCC----ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccC
Q 013675 304 TCLHVDLCLGGFVLPFAK--KLGY-PIPPF----DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS 376 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~--~~g~-~~p~~----~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~ 376 (438)
+++|.|+|....-.-|.+ ..|+ .. +. .--...+|++++|+||.+.+|.| |+++++++++.+.......-+
T Consensus 205 l~vi~DaAR~~gNA~~I~~re~g~~~~-~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~- 281 (450)
T TIGR02618 205 IKVFYDATRCVENAYFIKEREQGYEDK-SIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVF- 281 (450)
T ss_pred CEEEEEccchhhChhhhhcccccccCC-CHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhc-
Confidence 999999997542111211 1121 01 11 11133579999999999999986 778889887765533222222
Q ss_pred CCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 377 GGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 377 g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+|. ...|.-.+..+.++..+|...-. ....++....+++|.+.|.+. |+.+
T Consensus 282 eG~----~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-Gvpv 332 (450)
T TIGR02618 282 EGM----PSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-GVPI 332 (450)
T ss_pred CCc----cccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 211 11222222223344444433221 245566777899999999887 6654
No 229
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.66 E-value=1.1e-14 Score=148.06 Aligned_cols=226 Identities=15% Similarity=0.049 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++.+.+++++|.+ .. +++++|++|+..++.++... .+| +.|+++...|.++..+++..|.+++.
T Consensus 93 ~~~Le~~la~~~g~~-~~-------i~~~sG~~a~~~~i~~l~~~---~~g---~~vi~~~~~h~s~~~~~~~~g~~~~~ 158 (410)
T PRK13392 93 HVLLERELADLHGKE-SA-------LLFTSGYVSNDAALSTLGKL---LPG---CVILSDALNHASMIEGIRRSGAEKQV 158 (410)
T ss_pred HHHHHHHHHHHhCCC-CE-------EEECcHHHHHHHHHHHHhcC---CCC---CEEEEehhhhHHHHHHHHHcCCeEEE
Confidence 346667899999964 32 56666788988888865421 245 78888888999998888889999877
Q ss_pred eeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCC
Q 013675 253 VPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP 328 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p 328 (438)
++.+ |.+++++.++ ++|++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+... ..|....
T Consensus 159 ~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g---~~g~g~~ 230 (410)
T PRK13392 159 FRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYG---ARGGGIA 230 (410)
T ss_pred EeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcC---CCCCchh
Confidence 7643 4455555553 57899999999999999999999999999999999999999733220 0111010
Q ss_pred CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 329 ~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
........+|+++.+.+|.+ +..| |++.. ++++..........|. ...+.+....+++.++|+.+..
T Consensus 231 ~~~~~~~~~div~~tlsK~~-g~~G-G~~~~-~~~~~~~l~~~~~~~~--------~s~~~~~~~~~a~~aaL~~~~~-- 297 (410)
T PRK13392 231 ERDGLMDRIDMIQGTLAKAF-GCLG-GYIAA-SADLIDFVRSFAPGFI--------FTTALPPAVAAGATAAIRHLKT-- 297 (410)
T ss_pred hhccCCCCCcEEEEEChHhh-hccc-chhhc-CHHHHHHHHHhCcchh--------ccCcCCHHHHHHHHHHHHHHhc--
Confidence 11111234688888999984 3344 66544 4444332211111111 0011122234455566655422
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..+..++..++++++.+.|+++ |++
T Consensus 298 ~~~~~~~~~~~~~~l~~~L~~~-g~~ 322 (410)
T PRK13392 298 SQTERDAHQDRVAALKAKLNAN-GIP 322 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 3345567788889999999875 444
No 230
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.66 E-value=4.5e-15 Score=150.10 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=137.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
+....+..++.+.+.+++.+.++. ++++ + ++|+|+++++..++.++. .+| ++|+++.++|..+.
T Consensus 69 y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----i--~~t~G~~~al~~~~~~l~-----~~g---d~Vli~~p~~~~~~ 134 (394)
T PRK06836 69 YMPNAGYPEVREAIAESLNRRFGTPLTADH----I--VMTCGAAGALNVALKAIL-----NPG---DEVIVFAPYFVEYR 134 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCcCc----E--EEeCChHHHHHHHHHHhc-----CCC---CEEEEcCCCCccHH
Confidence 434456666777777777665543 4554 6 899999999999988875 367 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCCC-CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH------cCCeEEEec
Q 013675 241 KAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS------HGTCLHVDL 310 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~-~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~------~~i~lhVD~ 310 (438)
..++.+|++++.+|++++ +.+|+++++++++++++++++++|+||||.+.| +++|+++|++ ||+++++|+
T Consensus 135 ~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De 214 (394)
T PRK06836 135 FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDE 214 (394)
T ss_pred HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 999999999999999874 789999999999999999999999999999977 6677778888 899999999
Q ss_pred cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEec
Q 013675 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRN 361 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~ 361 (438)
+|..+... +...+.+ .....-.++..|+.|.+. .+..+|++...+
T Consensus 215 ~y~~~~~~-----~~~~~~~-~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~ 260 (394)
T PRK06836 215 PYREIVYD-----GAEVPYI-FKYYDNSIVVYSFSKSLSLPGERIGYIAVNP 260 (394)
T ss_pred cccccccC-----CCCCCCh-HHccCcEEEEecchhhccCcceeeEEEecCH
Confidence 99765421 1001111 111223577788999843 345689977754
No 231
>PLN02822 serine palmitoyltransferase
Probab=99.66 E-value=6.8e-15 Score=151.92 Aligned_cols=259 Identities=17% Similarity=0.132 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G 223 (438)
+.+.+.+.+..+-. +...+..+-+......++.+.++++++.+. . + ++++|++ ++..++.++. ++|
T Consensus 128 i~ea~~~al~~~G~-g~~g~r~~yg~~~~~~~Lee~La~~~~~~~-~----i--~~s~G~~-a~~sai~a~~-----~~g 193 (481)
T PLN02822 128 IKESCTSALEKYGV-GSCGPRGFYGTIDVHLDCETKIAKFLGTPD-S----I--LYSYGLS-TIFSVIPAFC-----KKG 193 (481)
T ss_pred HHHHHHHHHHHhCC-CCcccCccccCHHHHHHHHHHHHHHhCCCC-E----E--EECCHHH-HHHHHHHHhC-----CCC
Confidence 44555555554322 112222233445566677778999998763 2 4 6676666 6777777765 367
Q ss_pred CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhc--cCc-EEEEEecCCCCCccccCHHHHHHH
Q 013675 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYIN--RNT-VLIVGSAPGFPHGIIDPIQELGEL 298 (438)
Q Consensus 224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~--~~t-~~vv~~~~~~~tG~iddi~~I~~l 298 (438)
|.|++....|+++..++...|.+++.++.++ ++..+++++++... +++ ++|++..+.+++|.+.|+++|.++
T Consensus 194 ---d~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l 270 (481)
T PLN02822 194 ---DIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRL 270 (481)
T ss_pred ---CEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHH
Confidence 8999999999999999999999999998763 23333333333321 334 799999999999999999999999
Q ss_pred HHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675 299 ALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (438)
Q Consensus 299 a~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g 377 (438)
|++||+++++|++|+-+++ ...|.. ...++.....+|+++.+..|. +++.| |+++.+ +++.+.+.... .+
T Consensus 271 ~~k~~~~LIvDEa~s~gvl---G~~G~G~~e~~~v~~~~~dii~~s~sKa-lg~~G-G~i~g~-~~ii~~~~~~~---~~ 341 (481)
T PLN02822 271 KEKYRFRVLLDESNSFGVL---GKSGRGLSEHFGVPIEKIDIITAAMGHA-LATEG-GFCTGS-ARVVDHQRLSS---SG 341 (481)
T ss_pred HHHcCCEEEEECCcccccc---CCCCCChHHHcCCCCCCCeEEEecchhh-hhhCC-eEEEcC-HHHHHHHHhcC---Cc
Confidence 9999999999999973332 111110 001122223579999999999 56666 776654 44443321110 00
Q ss_pred CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+..++.|....+++-++++.+. ...+..++..++.+++.+.|++++|+.+
T Consensus 342 -----~~fsa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 392 (481)
T PLN02822 342 -----YVFSASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPGLSI 392 (481)
T ss_pred -----eeeccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 11122222222334445664432 2357788899999999999998777654
No 232
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.66 E-value=8.2e-15 Score=145.04 Aligned_cols=219 Identities=24% Similarity=0.256 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 174 AEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 174 ~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
.++++.+++.+| .++++ | +++.|++|.+...+++++. +| +.|+++.+++..+...++..|++++.
T Consensus 60 ~~l~~a~a~~~~~~~~~~----V--~~gnGsde~i~~l~~~~~~-----~g---d~vl~~~Ptf~~Y~~~a~~~g~~~~~ 125 (356)
T COG0079 60 RELRAALAEYYGVVDPEN----V--LVGNGSDELIELLVRAFVE-----PG---DTVLIPEPTFSMYEIAAQLAGAEVVK 125 (356)
T ss_pred HHHHHHHHHHhCCCCcce----E--EEcCChHHHHHHHHHHhhc-----CC---CEEEEcCCChHHHHHHHHhcCCeEEE
Confidence 355667889999 66555 5 7799999999999999884 77 89999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
||.++ +.+|++++.+++++++++|++++||||||...+.++|.+++... +.+++||+||..|.-+ +. ++..
T Consensus 126 v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~--~~----~~l~ 198 (356)
T COG0079 126 VPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPE--SS----LELL 198 (356)
T ss_pred ecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCc--hh----hhhc
Confidence 99988 99999999999999999999999999999999988888887754 7899999999765431 00 1001
Q ss_pred ccCCCCccEEEeCCCC-CCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675 331 DFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK-~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g 408 (438)
. ...--++.=++.| +|.++..+|+ .+.++++..........|.-.. .+..++...+. .+.
T Consensus 199 ~--~~~nlivlRTfSKa~gLAGlRlGy-~ia~~~~i~~l~~vr~p~~v~~---------------~a~~aa~aal~~~~~ 260 (356)
T COG0079 199 K--YPPNLIVLRTFSKAFGLAGLRVGY-AIANPELIAALNKVRPPFNVSS---------------PALAAAIAALRDADY 260 (356)
T ss_pred c--CCCCEEEEEecHHhhhcchhceee-ccCCHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHcccHHH
Confidence 1 1111266668889 5677888999 5666776665555555554331 13333333332 256
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
+++..+++.+.++++.+.|++++
T Consensus 261 ~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 261 LEESVERIREERERLYAALKALG 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888999999999999999885
No 233
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.66 E-value=2.9e-15 Score=149.00 Aligned_cols=242 Identities=11% Similarity=0.016 Sum_probs=168.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-H
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-K 241 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~ 241 (438)
...+|.+.++..++.+.+.++++.+.+. -+-+++.+||.++.+++..+.. .+| +++++...--..|. +
T Consensus 31 ~HRs~~F~~i~~e~~~~L~~l~~~~~~~----~v~~l~GsGT~a~Eaa~~nl~~----~~g---~~vLv~g~FG~r~~~e 99 (374)
T TIGR01365 31 SHRSKLGKEKLAEAIKKTREMLGVPADY----LIGIVPASDTGAVEMALWSMLG----CRG---VDVLAWESFGKGWVTD 99 (374)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhCCCCCc----EEEEECCchHHHHHHHHHHcCC----CCC---CeEEEECHHHHHHHHH
Confidence 3568889999999999999999985432 1347799999999999988752 145 67777651112245 8
Q ss_pred HHhhcCc-EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 242 AAQYFNI-KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 242 a~~~~Gi-~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
.++.+|+ +++.+..+.+..+|+++++. ++ .|+++|..|.||+..|+++|.+.+ +++.++||++.+-+..
T Consensus 100 ia~~~g~~~v~~l~~~~g~~~~~~~ve~--~~---~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~--- 169 (374)
T TIGR01365 100 VTKQLKLPDVRVLEAEYGKLPDLKKVDF--KN---DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQ--- 169 (374)
T ss_pred HHHhcCCCCcEEEcCCCCCCCCHHHcCC--CC---CEEEecCCCchheecccccccccc--CCCcEEEEccchhcCC---
Confidence 8899999 58888877777889999984 22 267999999999999997666432 5899999999654333
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch-hcccccCCCcc--C--C--CC-c-cCCCCC
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF-VAVTEWSGGLY--V--S--PT-V-AGSRPG 391 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~-~~~~~~~g~~~--~--~--~~-~-~gsr~~ 391 (438)
+++.. ++|++..+++|++.+|+|.|++.++++.+.+..- ....+|+.... . . .. . ..++..
T Consensus 170 --------~l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~T 239 (374)
T TIGR01365 170 --------DLDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINT 239 (374)
T ss_pred --------CCChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCC
Confidence 34444 5999999999999999999999999876543221 00001111000 0 0 00 0 113333
Q ss_pred chHHHHHHH---HHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 392 GLIAGAWAA---LMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 392 ~~ia~~~aa---l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
..+.++++. ++.+.++ |++.+.++..++++.+++.+++++.+++
T Consensus 240 P~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~ 287 (374)
T TIGR01365 240 PSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHF 287 (374)
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 344455554 4444465 8999999999999999999999853543
No 234
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.66 E-value=1e-14 Score=145.53 Aligned_cols=243 Identities=16% Similarity=0.173 Sum_probs=157.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCC-CCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS 237 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~-~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~ 237 (438)
..|....+..++++.+.+++.+-.|. +++ + + ++++|+.+++..+...++ ..+| +.|+++.+.|+
T Consensus 38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~----i--~~~~G~~~~~~~~~~~~~----~~~~---~~vlv~~P~y~ 104 (363)
T PF00155_consen 38 LGYPPPQGYPELREAIADFLGRRYGVPVDPEAN----I--LVTSGAQAALFLLLRLLK----INPG---DTVLVPDPCYP 104 (363)
T ss_dssp TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEG----E--EEESHHHHHHHHHHHHHH----SSTT---SEEEEEESSST
T ss_pred ccCCCchhhHHHHHHHHHHhhhccCcccccceE----E--EEecccccchhhhhhccc----cccc---ccceecCCccc
Confidence 44555667777887766666644444 333 3 3 555555555555555442 1255 89999999999
Q ss_pred cHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHH---HHHHHHHHcCCeE
Q 013675 238 AYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQ---ELGELALSHGTCL 306 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~---~I~~la~~~~i~l 306 (438)
.+...++..|++++.+|++ .++.+|+++|++.+++ ++.++++++|+||||...+.+ +|+++|++||+++
T Consensus 105 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~i 184 (363)
T PF00155_consen 105 SYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIII 184 (363)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEE
T ss_pred cccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccce
Confidence 9999999999999999975 4889999999999988 678999999999999987755 5555599999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCCccCCCCc-cEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV-TSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv-dsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 384 (438)
++|.+|+.+... ..+. .+.......+. .++..|..|.+. .+..+|+++. ++++.+........|..
T Consensus 185 i~De~y~~~~~~---~~~~-~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~------- 252 (363)
T PF00155_consen 185 IVDEAYSDLIFG---DPDF-GPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLS------- 252 (363)
T ss_dssp EEEETTTTGBSS---SSHT-HHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTS-------
T ss_pred eeeeceeccccC---CCcc-Ccccccccccccceeeeeccccccccccccccccc-hhhhhhhhhhccccccc-------
Confidence 999999876542 0000 00011111222 478889999843 3345899888 45444432222111111
Q ss_pred ccCCCCCchHHHHHHHHHHHcH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 385 VAGSRPGGLIAGAWAALMSLGQ--EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 385 ~~gsr~~~~ia~~~aal~~~g~--~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+......+...+...+. +..++..++..++++++.+.|++. ++.
T Consensus 253 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~ 298 (363)
T PF00155_consen 253 -----SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT 298 (363)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred -----cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh
Confidence 11111122223322222 266788888999999999999876 544
No 235
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.65 E-value=5.7e-15 Score=147.79 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=152.8
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.+|+++++ + ++|+|+++++.+++.++.+ +| ++|+++.++|+.+...++..|++++.||
T Consensus 68 ~Lr~aia~~~~~~~~~----I--~vt~Gs~e~i~~~~~~l~~-----~g---d~vlv~~P~y~~~~~~~~~~g~~v~~v~ 133 (366)
T PRK01533 68 TLRQTIANKLHVKMEQ----V--LCGSGLDEVIQIISRAVLK-----AG---DNIVTAGATFPQYRHHAIIEGCEVKEVA 133 (366)
T ss_pred HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEcCCcHHHHHHHHHHcCCEEEEee
Confidence 4556678888998876 7 8999999999999998763 67 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHH---HcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL---SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~---~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
++ ++.+|+++++++++++++++++++|+||||.+.+.+++.++++ +++ ++++|.+|..+... . .. .+...
T Consensus 134 ~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~--~--~~-~~~~~ 206 (366)
T PRK01533 134 LN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA--K--DF-PETLP 206 (366)
T ss_pred cC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc--c--cC-cchhH
Confidence 96 4579999999999989999999999999999988766666654 444 67889998754421 0 00 00111
Q ss_pred c-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HH
Q 013675 332 F-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EG 408 (438)
Q Consensus 332 ~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g 408 (438)
. ....-.++..|+.|... ++..+|+++.. +++.+........|. ....++.++...+.. +.
T Consensus 207 ~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~~~---------------~~~~~q~aa~~~l~~~~~ 270 (366)
T PRK01533 207 LLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEKLNVVRLPFN---------------VSSLAQKAATIAFGDDEF 270 (366)
T ss_pred HhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHHHHHhcCCCC---------------cCHHHHHHHHHHhCCHHH
Confidence 1 11123477778899943 44558887654 444332211111111 112244444444433 44
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.++..+...+..+++.+.++.+ |++
T Consensus 271 ~~~~~~~~~~~r~~~~~~l~~~-g~~ 295 (366)
T PRK01533 271 IEEIVRVNTEGLRQYESFCKEN-EIP 295 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 5566667777788888888765 443
No 236
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=99.65 E-value=7.8e-15 Score=147.18 Aligned_cols=303 Identities=17% Similarity=0.213 Sum_probs=219.1
Q ss_pred CCCCc-HHHHHHHHHHhCCCCCCC--CCceeeeecCCCCcchHHHHHHHHHHHhhccCCCCc-ccchhHHHHHHHHHHHH
Q 013675 105 RAGLG-VGVIEKLKEEKGKDVVWQ--GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHL-DIFQSVARFEAEVIAMT 180 (438)
Q Consensus 105 ~~g~~-~~i~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~e~~~~~~~ 180 (438)
..-.| .+++++++++.+++.... --..|.+...-+. ..+++--.+..|.+-.|+.| +..++..++..++.+++
T Consensus 515 n~yhSEt~lvRYm~kLenKDlSLvhSMiPLGSCTMKLNs---ttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~~Le~~L 591 (1001)
T KOG2040|consen 515 NSYHSETELVRYMKKLENKDLSLVHSMIPLGSCTMKLNS---TTEMMPITWPEFANIHPFAPVEQAQGYQQLFTELEKDL 591 (1001)
T ss_pred hhcccHHHHHHHHHHhhccchhhhhhcccccceeeeccc---cceeccccchhhccCCCCCchHHHhhHHHHHHHHHHHh
Confidence 45568 999999999977766543 3455666665444 35566666777888888876 67899999999999999
Q ss_pred HHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCC
Q 013675 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEF 259 (438)
Q Consensus 181 a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~ 259 (438)
|++.|.|.-. .-.++|.++-...+++.|.+... +|- .+..-++|.++|......+.+.|++++.|.++.+|
T Consensus 592 c~iTG~D~~s-------~QPNsGA~GEYaGL~~IRaY~~~-kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G 663 (1001)
T KOG2040|consen 592 CEITGFDSFS-------LQPNSGAQGEYAGLRVIRAYLES-KGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANG 663 (1001)
T ss_pred heeeccccee-------ecCCCCcccchhhHHHHHHHHHh-ccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCC
Confidence 9999998642 56677888888888888877664 343 23456999999999999999999999999999999
Q ss_pred ccCHHHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC
Q 013675 260 RADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ 335 (438)
Q Consensus 260 ~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~ 335 (438)
.+|..+|+++.++ +-.++.++.|++ +|.+++ +++++++.|++|--+..|||-- ...+|. -.....
T Consensus 664 ~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANM------NAqVGl----c~pGd~ 732 (1001)
T KOG2040|consen 664 NIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANM------NAQVGL----CRPGDI 732 (1001)
T ss_pred CccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCc------cceecc----cCCccc
Confidence 9999999998865 467999999988 899976 9999999999999999999941 123343 233556
Q ss_pred CccEEEeCCCCCCCCCC-----CcEEEEEecccccccc---hhcccccCCCccCCCCccCCCCC--chHHHHHHHHHHHc
Q 013675 336 GVTSISVDVHKYGLAPK-----GTSVVLYRNREIRKHQ---FVAVTEWSGGLYVSPTVAGSRPG--GLIAGAWAALMSLG 405 (438)
Q Consensus 336 gvdsis~s~hK~~~~p~-----g~g~l~~r~~~~~~~~---~~~~~~~~g~~~~~~~~~gsr~~--~~ia~~~aal~~~g 405 (438)
|.|+.-.+.||.++-|. |.|-+.++.. +.... -...+.-.++...-.+......| ..+.-.|+-++.+|
T Consensus 733 GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H-LapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG 811 (1001)
T KOG2040|consen 733 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMG 811 (1001)
T ss_pred cccceeecccceeeecCCCCCCCCCccchhhh-ccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhc
Confidence 88999999999965444 4455555432 21110 00000000000000000111111 12334688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..|+.+..+-.+-+|.|++++|+..
T Consensus 812 ~~GL~~as~~AiLNaNYMakRLe~h 836 (1001)
T KOG2040|consen 812 SGGLKDASKIAILNANYMAKRLESH 836 (1001)
T ss_pred ccccchhhHHHhhhhHHHHHHHhhc
Confidence 9999999999999999999999874
No 237
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.65 E-value=2.8e-14 Score=144.75 Aligned_cols=209 Identities=12% Similarity=0.103 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhhc-cCCCCcccchhHHHHHHHHHHHHHHHhC--CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh
Q 013675 145 FSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLG--NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK 221 (438)
Q Consensus 145 ~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~~~~~~~a~l~g--~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~ 221 (438)
.+.+.+++..... ....+|....|..++.+.+.+++.+..+ .++++ +....|.|+++|+.+++.+++... .
T Consensus 49 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~----v~~~~t~G~~~al~~~~~~l~~~~--~ 122 (404)
T PTZ00376 49 LESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKR----IATVQALSGTGALRLGFEFLKRFL--P 122 (404)
T ss_pred hhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCe----EEEeeccCcchHHHHHHHHHHHhc--C
Confidence 4455555533332 2335566677888888887777755433 24444 511159999999998877543221 3
Q ss_pred cCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC--CCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---HH
Q 013675 222 RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD--KEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP---IQ 293 (438)
Q Consensus 222 ~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~--~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd---i~ 293 (438)
+| |+|++++++|+.+...++..|++++.+|+. +++.+|++.+++++. ++++++++++|+||||.+.+ ++
T Consensus 123 ~G---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~ 199 (404)
T PTZ00376 123 AG---TTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWK 199 (404)
T ss_pred CC---CEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHH
Confidence 67 999999999999999999999999999994 358999999999985 35688889999999999976 66
Q ss_pred HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEE--Eeccc
Q 013675 294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVL--YRNRE 363 (438)
Q Consensus 294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~--~r~~~ 363 (438)
+|+++|++|++++++|.+|..+.....+........+... ..-.++..|+.|... .+..+|+++ +.+++
T Consensus 200 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~ 271 (404)
T PTZ00376 200 EIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER-GVEFLVAQSFSKNMGLYGERIGALHIVCANKE 271 (404)
T ss_pred HHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCcccccccccceEEEEeCCHH
Confidence 7888899999999999999765431000000000011111 112467778899954 446689975 45554
No 238
>PRK07908 hypothetical protein; Provisional
Probab=99.64 E-value=9.6e-15 Score=145.26 Aligned_cols=216 Identities=19% Similarity=0.166 Sum_probs=145.1
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.+|.++++ + ++|+|+++++.++++ +. +| .+++..+++..+...++..|++++.+|
T Consensus 62 ~lr~aia~~~~~~~~~----I--~it~Ga~~al~~~~~-l~------~~----~viv~~P~y~~~~~~~~~~G~~i~~v~ 124 (349)
T PRK07908 62 RARAAVAARHGRTPDE----V--LLLAGAAEGFALLAR-LR------PR----RAAVVHPSFTEPEAALRAAGIPVHRVV 124 (349)
T ss_pred HHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHh-cC------CC----eEEEeCCCChHHHHHHHHcCCEEEeec
Confidence 4556777888988776 7 899999999988776 21 33 567788899888999999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV 334 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~ 334 (438)
+++++.+|++++ +++++++++++|+||||.+.+.++|.++|++ +.++++|++|+.+.. +. .+++....
T Consensus 125 ~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~------~~-~~~l~~~~ 192 (349)
T PRK07908 125 LDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVP------GE-PESLAGDD 192 (349)
T ss_pred cCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhcc------CC-cccccccc
Confidence 987788999855 4578899999999999999999999999964 789999999975421 11 11111111
Q ss_pred CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch-HHHHHHHHHHHcHHHHHHH
Q 013675 335 QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL-IAGAWAALMSLGQEGYLEN 412 (438)
Q Consensus 335 ~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~-ia~~~aal~~~g~~g~~~~ 412 (438)
..-.++..+++|.. ..+..+|+++.+ +++.+........|.. +.. .+++...+...+.+.+++.
T Consensus 193 ~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~ 258 (349)
T PRK07908 193 LPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRAHWPV-------------GTLQLEAIAACCAPRAVAEAAAD 258 (349)
T ss_pred CCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCCCCCc-------------cHHHHHHHHHHhcccchHHHHHH
Confidence 11134445889973 244557998865 3333322111111211 111 1122222211123456677
Q ss_pred HHHHHHHHHHHHHHhhcCCCcc
Q 013675 413 TKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 413 ~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.++..++++++.+.|+++ +++
T Consensus 259 ~~~~~~~r~~l~~~L~~~-~~~ 279 (349)
T PRK07908 259 AARLAADRAEMVAGLRAV-GAR 279 (349)
T ss_pred HHHHHHHHHHHHHHHHhC-CcE
Confidence 788888899999999876 554
No 239
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=140.37 Aligned_cols=234 Identities=22% Similarity=0.223 Sum_probs=161.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
+..-|...++|++ +|+++|-+ .|+|+++||++|++++++.++ ++| .+||+...+|.-..+.
T Consensus 52 yGeD~tt~rLE~~----vA~l~GKE--------AgLFv~SGTmgNllaIm~Hc~----~rg---~eii~gd~~HI~~~E~ 112 (384)
T KOG1368|consen 52 YGEDPTTNRLEQR----VAELFGKE--------AGLFVPSGTMGNLLAIMVHCH----QRG---SEIIVGDRAHIHRYEQ 112 (384)
T ss_pred ccCCccHHHHHHH----HHHHhCcc--------ceeeecccccccHHHHHHHhc----CCC---ceEEeccchheeehhc
Confidence 3445667888886 67777765 458999999999999999886 367 7999999999765543
Q ss_pred ---HhhcCcEEEEeeCCCCCccCHHHHHHhhcc--------CcEEEEEecCCCCCc-cccCHH---HHHHHHHHcCCeEE
Q 013675 243 ---AQYFNIKLWRVPVDKEFRADVKAIKKYINR--------NTVLIVGSAPGFPHG-IIDPIQ---ELGELALSHGTCLH 307 (438)
Q Consensus 243 ---~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--------~t~~vv~~~~~~~tG-~iddi~---~I~~la~~~~i~lh 307 (438)
....|+.++.+...+++.||++++|++|.. -|++|++.+-.+.+| .+.|++ +|.++|+++|+.+|
T Consensus 113 gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH 192 (384)
T KOG1368|consen 113 GGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLH 192 (384)
T ss_pred cChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeee
Confidence 334478888888888999999999999973 279999999988888 777755 77889999999999
Q ss_pred EeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g 387 (438)
.|||--.-+. -+.| + +..--..-+||+++...|.+.+|-|+ +++.++++....-.+.....||.
T Consensus 193 ~DGARi~NAa---vasg--V-~vk~i~~~fDSVsiCLSKglgAPVGS--ViVG~k~FI~kA~~~RKalGGGm-------- 256 (384)
T KOG1368|consen 193 MDGARIFNAA---VASG--V-PVKKICSAFDSVSICLSKGLGAPVGS--VIVGSKDFIDKARHFRKALGGGM-------- 256 (384)
T ss_pred cchhhhhhHH---HHcC--C-CHHHHHHhhhhhhhhhhccCCCCccc--EEEccHHHHHHHHHHHHHhcCch--------
Confidence 9999421110 1122 2 12212223599999999999999874 56666665544322222222222
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
+..|.+.++...++. .. ....++-++.|+.+++.+.+.+++++.
T Consensus 257 RQsGvLaaaaLval~---~~--~~~L~~dHk~A~~lAe~~~~~~~i~v~ 300 (384)
T KOG1368|consen 257 RQSGVLAAAALVALD---EN--VPLLRADHKRAKELAEYINTPEEIRVE 300 (384)
T ss_pred hHHHHHHHHHHHHhh---cc--hHHHHHHHHHHHHHHHHhccccceeee
Confidence 223444333333332 22 236677778888888888887767653
No 240
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.64 E-value=3.5e-14 Score=144.00 Aligned_cols=227 Identities=16% Similarity=0.091 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
....++.+.+++++|.+. . +++++|++|+..++..++.. .+| +.|+.....|.+....+...|+++
T Consensus 90 ~~~~~Le~~la~~~g~~~------~--l~~~sG~~an~~ai~~l~~~---~~~---~~v~~~~~~h~s~~~~~~~~g~~~ 155 (402)
T TIGR01821 90 IPHVELEAELADLHGKES------A--LVFTSGYVANDATLATLAKI---IPG---CVIFSDELNHASMIEGIRHSGAEK 155 (402)
T ss_pred HHHHHHHHHHHHHhCCCe------E--EEECchHHHHHHHHHHhhCC---CCC---CEEEEcchHhHHHHHHHHHcCCeE
Confidence 344567778999998642 2 67788899999999887631 123 567777778999988888889887
Q ss_pred EEeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh-hhhhhcCC
Q 013675 251 WRVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL-PFAKKLGY 325 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~-pf~~~~g~ 325 (438)
..++.+ |++++++.++ ++|++|+++++++++|.+.|+++|.++|++||+++++|++++.+.. ++- .|.
T Consensus 156 ~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g--~g~ 228 (402)
T TIGR01821 156 FIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRG--GGI 228 (402)
T ss_pred EEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCC--Ccc
Confidence 766542 6778888775 2588999999999999999999999999999999999999873322 210 111
Q ss_pred CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
....+ ....+|++..+..|.+ +..| |+++.+ +++.+........| ...++.+....+++.++++.+.
T Consensus 229 -~~~~~-~~~~~div~~t~sKa~-g~~G-G~i~~~-~~~~~~l~~~~~~~--------~~t~~~~~~~~aaa~aaL~~~~ 295 (402)
T TIGR01821 229 -AERDG-LMHRIDIIEGTLAKAF-GVVG-GYIAAS-RKLIDAIRSYAPGF--------IFTTSLPPAIAAGATASIRHLK 295 (402)
T ss_pred -chhcc-CCCCCeEEEEechhhh-ccCC-ceeecC-HHHHHHHHHhCcCc--------eecCcCCHHHHHHHHHHHHHhh
Confidence 00011 1134688888999994 5444 665544 33332211111111 0111122223445556665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 406 QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.. .+..++..++++++.+.|+++ |++
T Consensus 296 ~~--~~~~~~~~~~~~~l~~~L~~~-g~~ 321 (402)
T TIGR01821 296 ES--QDLRRAHQENVKRLKNLLEAL-GIP 321 (402)
T ss_pred cC--HHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 22 444556668899999999875 443
No 241
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.64 E-value=3.3e-14 Score=140.76 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=148.4
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++++|.++++ + ++|+|+++++.+++.++ +| ++|+++.+.|..+..+++..|++++.++
T Consensus 59 ~lr~~ia~~~~~~~~~----I--~~t~G~~~~l~~~~~~~-------~g---d~V~v~~P~y~~~~~~~~~~g~~~~~v~ 122 (337)
T PRK03967 59 PLREAIAEFYGLDAEN----I--AVGNGSDELISYLVKLF-------EG---KHIVITPPTFGMYSFYAKLNGIPVIDVP 122 (337)
T ss_pred HHHHHHHHHhCcCcce----E--EEcCCHHHHHHHHHHHh-------CC---CeEEEeCCChHHHHHHHHHcCCeEEEee
Confidence 4555677788888776 6 89999999998766543 45 8999999999999989999999999999
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCC
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV 334 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~ 334 (438)
+++++.+|++++++.+ ++++++++++|+||||.+.+.++|.++++ +++++++|++|..+.- .. . .+..+ ..
T Consensus 123 ~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~---~~--~-~~~~~-~~ 193 (337)
T PRK03967 123 LKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSG---KS--L-IGLID-EY 193 (337)
T ss_pred cCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcc---cc--h-HHHHh-hC
Confidence 9888899999999875 57888889999999999999999999995 7999999999976531 00 0 00011 11
Q ss_pred CCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH-cHHHHHHH
Q 013675 335 QGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-GQEGYLEN 412 (438)
Q Consensus 335 ~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-g~~g~~~~ 412 (438)
.. .++..|+.|... ....+|+++.. +++.+........|. -+ ..+..++...+ ..+.+.+.
T Consensus 194 ~~-vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~~~------------~~---~~~q~~~~~~l~~~~~~~~~ 256 (337)
T PRK03967 194 PN-LILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPPFS------------LN---ILTMKIVRLALDHYDLIEER 256 (337)
T ss_pred CC-EEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCCCC------------CC---HHHHHHHHHHHhCHHHHHHH
Confidence 11 467778999954 44668998764 444332211111110 01 11333333223 23445566
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 013675 413 TKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 413 ~~~~~~~a~~l~~~L~~~ 430 (438)
.++..+.++.+.+.|.+.
T Consensus 257 ~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 257 IDYIIKERERVRRELGEY 274 (337)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 666677777888888653
No 242
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.64 E-value=1.9e-14 Score=151.51 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..+..+..|+.||++..- .+|+|+|.||..++.++.. +| |.|+++..+|-|+..++.+.|+++++
T Consensus 197 i~eAe~~aA~~fgAd~ty-------fvvNGTS~~n~av~~a~~~-----~G---d~VLvdRN~HKSv~~aLilsga~PVY 261 (713)
T PRK15399 197 HLEAEEYIARTFGAEQSY-------IVTNGTSTSNKIVGMYAAP-----AG---STLLIDRNCHKSLAHLLMMSDVVPIW 261 (713)
T ss_pred HHHHHHHHHHHhCCCcEE-------EEeCChHHHHHHHHHHhcC-----CC---CEEEeecccHHHHHHHHHHcCCeeEE
Confidence 334555789999999763 7899999999999999873 78 99999999999999999999999999
Q ss_pred eeCCC-----CCccCH-----HHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeE-EEeccccchh
Q 013675 253 VPVDK-----EFRADV-----KAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCL-HVDLCLGGFV 316 (438)
Q Consensus 253 v~~~~-----~~~~d~-----~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l-hVD~a~gg~~ 316 (438)
++... -+.++. +.++++|.++ ++.+++++||+ .|.+.|+++|.++| |+.+ |||+|||+..
T Consensus 262 l~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~ 337 (713)
T PRK15399 262 LKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYT 337 (713)
T ss_pred ecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhh
Confidence 97653 134555 9999999753 36899999977 89999999999999 6776 8999998754
Q ss_pred hhhhhhcCCCCCC-Ccc-CCCCccEE---EeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 317 LPFAKKLGYPIPP-FDF-SVQGVTSI---SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 317 ~pf~~~~g~~~p~-~~~-~~~gvdsi---s~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
. |... .|+ ... ...+.|.+ +-|+||.+.+-..++++.++.. +....+...... ....|.+.
T Consensus 338 ~-F~p~----~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-vd~~~~n~a~~m--------~~STSPsY 403 (713)
T PRK15399 338 H-FHPI----YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-YDEETFNEAFMM--------HTSTSPSY 403 (713)
T ss_pred h-cCcc----cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-CCHHHHHHHHHH--------HcCCCcHH
Confidence 2 3211 111 111 11245666 9999999988888999988653 221111111000 01123444
Q ss_pred chHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 392 GLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 392 ~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
.++|++-.+.+.+.. .| ++..++..+.+..+++.|.++++
T Consensus 404 ~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~ 444 (713)
T PRK15399 404 PIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLRE 444 (713)
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 567777777766643 44 66788888888899998887654
No 243
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.64 E-value=5.9e-15 Score=155.38 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..+..+..|+.||++..- .+|+|+|.+|..++.++. .+| +.|+++..+|-|+..++.+.|+++++
T Consensus 197 i~eAe~~AA~~fgAd~ty-------fvvNGTS~~n~av~~a~~-----~~G---d~VLvdRN~HKSv~haLilsga~PVY 261 (714)
T PRK15400 197 HKEAEEYIARVFNADRSY-------MVTNGTSTANKIVGMYSA-----PAG---STVLIDRNCHKSLTHLMMMSDVTPIY 261 (714)
T ss_pred HHHHHHHHHHHhCCCcEE-------EEeCchHHHHHHHHHHhc-----CCC---CEEEeecccHHHHHHHHHHcCCeEEE
Confidence 345556799999999863 789999999999999876 378 99999999999999999999999999
Q ss_pred eeCCCC-----CccC-----HHHHHHhhccC-----cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 253 VPVDKE-----FRAD-----VKAIKKYINRN-----TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 253 v~~~~~-----~~~d-----~~~Le~~I~~~-----t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
++...+ +.++ .+.++++|.++ ++.+++++||+ .|.+.|+++|.++|+.++ +|||+|||+...
T Consensus 262 l~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 262 FRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred ecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhc
Confidence 976531 2345 89999999754 33799999977 899999999999999887 799999987653
Q ss_pred hhhhhcCCCCCCCccCCCCc---c--EEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 318 PFAKKLGYPIPPFDFSVQGV---T--SISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~gv---d--sis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
|... .|+...-..|. | +++-|+||.+.+-..++++.++.. +....+...... ....|.+..
T Consensus 339 -F~p~----~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~m--------~~STSPsY~ 404 (714)
T PRK15400 339 -FSPI----YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMM--------HTTTSPHYG 404 (714)
T ss_pred -cCcc----cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHHH--------HcCCCcHHH
Confidence 2211 11111111334 4 899999999888888888877643 221111110000 011234445
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPM 432 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g 432 (438)
++|++-.+.+.+-.+.-++..++..+.+..+++.|.++++
T Consensus 405 l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~ 444 (714)
T PRK15400 405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT 444 (714)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6777877776664323367788888999999999988766
No 244
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.63 E-value=6.8e-15 Score=137.47 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=175.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-----H
Q 013675 165 IFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-----Y 239 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-----~ 239 (438)
..+....+-+.+-..++.++|+.+++ + +++.+.|--+.-.+.++.. ..+| ..||+++...+. .
T Consensus 70 a~~~W~~lp~~lgdklApLiGA~~~E----v--vv~dtts~nl~k~L~aalr---~~~~---r~vIv~E~~~fpTdly~a 137 (407)
T COG3844 70 AKADWFDLPERLGDKLAPLIGARAGE----V--VVTDTTSINLFKVLAAALR---PQEG---RRVIVSEGDNFPTDLYIA 137 (407)
T ss_pred cCCchhhchhHHHHHhhhhhcCCCCc----e--EEeCCcchHHHHHHHHHhc---cCCC---ceEEeecCCCCCcchhhh
Confidence 34556778888999999999999887 4 5555555444444444432 1234 788888765333 4
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhh
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf 319 (438)
...++.+|+. .+-.+.+++.++++++++++.+|++++.++-||...|+.+|.+++|++|+.+.-|-|++.+.+
T Consensus 138 ~g~~~~~~~~-----~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav-- 210 (407)
T COG3844 138 EGLADLLGIG-----YDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV-- 210 (407)
T ss_pred cchhhhhccc-----ccceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc--
Confidence 4556666554 222456788899999999999999999999999999999999999999999999999876665
Q ss_pred hhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC-cEEEEEecccccccchhcccccCCCcc-------------CCCCc
Q 013675 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG-TSVVLYRNREIRKHQFVAVTEWSGGLY-------------VSPTV 385 (438)
Q Consensus 320 ~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g-~g~l~~r~~~~~~~~~~~~~~~~g~~~-------------~~~~~ 385 (438)
+.+....|+|+-+.++|||+++++| .+++++. ++.++........|.|-.- .....
T Consensus 211 ---------p~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~ 280 (407)
T COG3844 211 ---------PVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFL 280 (407)
T ss_pred ---------ceeecccCCCeeeeeeceeccCCCCCceeEEec-cccccccccccccccCCCCcchhhhccCcCcccccee
Confidence 4778889999999999999987666 5555555 4444444444455655220 11123
Q ss_pred cCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 386 AGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 386 ~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+|+.+-..++++..+|..+..-++.+..++...++.++.+.++..
T Consensus 281 ~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~ 325 (407)
T COG3844 281 CGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEAR 325 (407)
T ss_pred eCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhc
Confidence 444555556788889988888899999999999999999999864
No 245
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.63 E-value=3.2e-14 Score=142.29 Aligned_cols=224 Identities=18% Similarity=0.180 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEe
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v 253 (438)
.++++.+++++|+++++ + ++|+|+++++.+++.++.. +| .++|+++.+.|..+...++..|++++.+
T Consensus 62 ~~lr~~ia~~~~~~~~~----I--~~t~G~~~~l~~~~~~~~~-----~g--~~~vlv~~p~y~~~~~~~~~~g~~~~~v 128 (364)
T PRK04781 62 PGLRSALAALYGCAPEQ----L--LIGRGSDEAIDLLVRALCV-----PG--RDAVLVTPPVFGMYAVCARLQNAPLVEV 128 (364)
T ss_pred HHHHHHHHHHhCcChHH----E--EEeCCHHHHHHHHHHHhcC-----CC--CCeEEEcCCChHHHHHHHHHcCCEEEEE
Confidence 35666788888988776 6 8999999999999987752 33 1479999999888888889999999999
Q ss_pred eCCC---CCccCHHHHHHh-hccCcEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEeccccchhhhhhhhcCCCC
Q 013675 254 PVDK---EFRADVKAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALS--HGTCLHVDLCLGGFVLPFAKKLGYPI 327 (438)
Q Consensus 254 ~~~~---~~~~d~~~Le~~-I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~--~~i~lhVD~a~gg~~~pf~~~~g~~~ 327 (438)
|+++ ++.+|++++++. +++++++|++++|+||||.+.|.+++.++++. +++++++|++|+.|... .. ..
T Consensus 129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~--~~---~~ 203 (364)
T PRK04781 129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDV--PS---AV 203 (364)
T ss_pred ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCC--cc---hH
Confidence 9842 356899998654 46789999999999999999999888888775 47999999999866420 00 00
Q ss_pred CCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH--
Q 013675 328 PPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL-- 404 (438)
Q Consensus 328 p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~-- 404 (438)
+..+ .... -++..++.|... .+..+|+++.. +++..........|.. + ..++.++...+
T Consensus 204 ~~~~-~~~~-vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l~~~~~~~~~----------~-----~~~~~~a~~~l~~ 265 (364)
T PRK04781 204 GLLA-RYDN-LAVLRTLSKAHALAAARIGSLIAN-AELIAVLRRCQAPYPV----------P-----TPCAALAEQALSA 265 (364)
T ss_pred HHHh-hCCC-EEEEecChhhcccccceeeeeeCC-HHHHHHHHhccCCCCC----------C-----HHHHHHHHHHHhc
Confidence 0111 1112 367788999843 55678997754 4444322211111211 0 11222333333
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 405 G-QEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 405 g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
+ .+...+..++..+.++.+.+.|++++++
T Consensus 266 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 295 (364)
T PRK04781 266 PALAVTARRVAEVRAERERLHAALAQLPGV 295 (364)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 2345566667778889999999888775
No 246
>PLN02483 serine palmitoyltransferase
Probab=99.63 E-value=4.4e-14 Score=146.26 Aligned_cols=254 Identities=11% Similarity=0.037 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG 223 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G 223 (438)
..+.+.+++..+... ........+......++.+.+++++|.+.. ++.++|+.++..++.++. ++|
T Consensus 120 ~~~~~~~ai~~~g~~-~~~sr~~~g~~~~~~ele~~lA~~~g~~~a--------i~~~~G~~an~~~i~al~-----~~G 185 (489)
T PLN02483 120 CTPRVIESLKKYSAS-TCSSRVDGGTTKLHRELEELVARFVGKPAA--------IVFGMGYATNSTIIPALI-----GKG 185 (489)
T ss_pred HHHHHHHHHHHhCCC-CCccccccCCcHHHHHHHHHHHHHhCCCcE--------EEECCHHHHHHHHHHHhC-----CCC
Confidence 345556666555322 111221122334455666779999996542 455557777877777765 377
Q ss_pred CCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc-------cCc-----E-EEEEecCCCCCcccc
Q 013675 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN-------RNT-----V-LIVGSAPGFPHGIID 290 (438)
Q Consensus 224 ~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-------~~t-----~-~vv~~~~~~~tG~id 290 (438)
|+|++++..|+++...++..|++++.++.+ |++++++.++ ++| + +|++....+++|.+.
T Consensus 186 ---d~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~ 257 (489)
T PLN02483 186 ---GLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC 257 (489)
T ss_pred ---CEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc
Confidence 999999999999999999999999999865 4566665553 222 4 455555558899999
Q ss_pred CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675 291 PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369 (438)
Q Consensus 291 di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~ 369 (438)
++++|.++|++||+++++|++++-+... ..|.. .+.++....++|++..+++|. +++.| |+++. ++++.+...
T Consensus 258 ~l~~I~~la~~~~~~livDEa~s~g~~G---~~G~g~~~~~~v~~~~~dI~~~SfSKs-~g~~G-G~i~~-~~~li~~l~ 331 (489)
T PLN02483 258 KLPEIVAVCKKYKAYVYLDEAHSIGAVG---KTGRGVCELLGVDPADVDIMMGTFTKS-FGSCG-GYIAG-SKELIQYLK 331 (489)
T ss_pred CHHHHHHHHHHcCCEEEEECcCccCccC---CCCCchHHhcCCCcccCcEEEEecchh-cccCc-eEEEc-CHHHHHHHH
Confidence 9999999999999999999998632221 11110 111222234689999999999 56666 77654 444443321
Q ss_pred hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-H---HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-Q---EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~---~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.....+ ...++.+...++++.++++.+- . +...+..++..++++++.+.|+++ |+.
T Consensus 332 ~~~~~~--------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~ 391 (489)
T PLN02483 332 RTCPAH--------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFE 391 (489)
T ss_pred HhCccc--------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 111000 0011111122333444554432 1 223556778889999999999886 554
No 247
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.62 E-value=1.1e-13 Score=140.58 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=149.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
..|...++..++.+.+.+++.+..|. ++++ | ++|+|+++++.+.+ .+. .+| ++|+++.++|+.
T Consensus 70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~----I--~it~Ga~~al~~l~-~~~-----~~g---d~V~v~~P~Y~~ 134 (409)
T PRK07590 70 RGYGPEQGYDFLREKIAENDYQARGCDISADE----I--FISDGAKCDTGNIL-DIF-----GPD---NTIAVTDPVYPV 134 (409)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCcCChhh----E--EECCCHHHHHHHHH-Hhc-----CCC---CEEEEeCCCCcc
Confidence 34545677777888777777666554 5554 6 89999999988743 322 267 899999999999
Q ss_pred HHHHHhhcCcE-----------EEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc
Q 013675 239 YDKAAQYFNIK-----------LWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH 302 (438)
Q Consensus 239 ~~~a~~~~Gi~-----------v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~ 302 (438)
+...++..|.+ ++.+|+++ ++..|.+ ++++++|++++|+||||.+.+ +++|+++|++|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~ 208 (409)
T PRK07590 135 YVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN 208 (409)
T ss_pred hHHHHHHcCCcccccccccccceeEeecccccCCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc
Confidence 99999999987 89999874 3444432 257899999999999999977 56788889999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCc-cC-CCCccEEEeCCCCCC-CCCCCcEEEEEeccccccc-----------c
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFD-FS-VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKH-----------Q 368 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~-~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~-----------~ 368 (438)
|+++++|.+|+.+.. + +...+++. .. .....++..|+.|.+ .....+|+++..++ +... .
T Consensus 209 ~~~iI~De~Y~~~~~---~--~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~ 282 (409)
T PRK07590 209 GSLILFDAAYEAFIS---D--PSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKE-LKGKTSDGEGVSLNSL 282 (409)
T ss_pred CeEEEEEccchhhcc---C--CCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHH-HhhhccccchhhhHHH
Confidence 999999999986542 1 10011111 11 112245677899985 35567899876543 3320 0
Q ss_pred hhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 369 FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 369 ~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+...... ... +.....+.++...+ +...+++..++..+..+.+.+.|++.
T Consensus 283 ~~~~~~~--------~~~----~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 335 (409)
T PRK07590 283 WNRRQST--------KFN----GVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA 335 (409)
T ss_pred HHHHHhh--------ccc----CcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000000 000 00111333332222 34456667777788888888988875
No 248
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.62 E-value=5.9e-14 Score=142.53 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~ 249 (438)
.....++.+.+++++|.+ .. ++.++|++|+..++..++.. .++ +.|+.....|.+....+...|.+
T Consensus 90 ~~~~~~l~~~la~~~g~~-~~-------~~~~sG~~an~~ai~~l~~~---~~~---~~i~~~~~~h~s~~~~~~~~~~~ 155 (407)
T PRK09064 90 NHYHVELERELADLHGKE-AA-------LVFTSGYVSNDATLSTLAKL---IPD---CVIFSDELNHASMIEGIRRSRCE 155 (407)
T ss_pred HHHHHHHHHHHHHHhCCC-cE-------EEECcHHHHHHHHHHHHhCC---CCC---CEEEEeCcchHHHHHHHHHcCCc
Confidence 344556667788888853 22 66677889999988877531 123 55666667798888888888888
Q ss_pred EEEeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcC
Q 013675 250 LWRVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLG 324 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g 324 (438)
+..++.+ |++++++.++ +++++|+++++++++|.+.|+++|.++|++||+++++|++|+.+. -| .|
T Consensus 156 ~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~----~g 226 (407)
T PRK09064 156 KHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGP----RG 226 (407)
T ss_pred EEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCC----CC
Confidence 7766642 7788888876 468999999999999999999999999999999999999997322 22 11
Q ss_pred CCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH
Q 013675 325 YPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL 404 (438)
Q Consensus 325 ~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~ 404 (438)
............+|++..+++|. +++.| |+++.+ +++..........|. ...+.+....+++.++++.+
T Consensus 227 ~g~~~~~~~~~~~div~~t~sKa-~g~~G-G~~~~~-~~~~~~l~~~~~~~~--------~t~~~~~~~~~aa~~al~~~ 295 (407)
T PRK09064 227 GGIAERDGLMDRIDIIEGTLAKA-FGVMG-GYIAGS-AALVDAVRSYAPGFI--------FTTSLPPAIAAAALASIRHL 295 (407)
T ss_pred CChHHhcCCCCCCeEEEEecchh-hhccC-ceEecC-HHHHHHHHHhCcccc--------ccCcCCHHHHHHHHHHHHHH
Confidence 10100000112458888899998 56555 666554 433322111111110 01112222334555666655
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 405 GQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 405 g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
... ....++..++++++.+.|+++ |++
T Consensus 296 ~~~--~~~~~~~~~~~~~l~~~L~~~-g~~ 322 (407)
T PRK09064 296 KES--NEERERHQERAAKLKAALDAA-GIP 322 (407)
T ss_pred hcC--HHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 332 334577888999999999875 443
No 249
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.62 E-value=3.8e-14 Score=140.13 Aligned_cols=222 Identities=22% Similarity=0.191 Sum_probs=164.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH----HH
Q 013675 166 FQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY----DK 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~----~~ 241 (438)
.|....+|+ .++.|-|... ++.+++|..|+..++.++.. +| |+|+++...|... .+
T Consensus 62 nPT~~~lE~----~~a~LEg~~~--------~~afsSGmaAI~~~~l~ll~-----~G---D~vl~~~~~YG~t~~~~~~ 121 (396)
T COG0626 62 NPTRDALEE----ALAELEGGED--------AFAFSSGMAAISTALLALLK-----AG---DHVLLPDDLYGGTYRLFEK 121 (396)
T ss_pred CccHHHHHH----HHHHhhCCCc--------EEEecCcHHHHHHHHHHhcC-----CC---CEEEecCCccchHHHHHHH
Confidence 455555555 5777776653 37899999999999888773 68 9999999987774 44
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
....+|+++..++.. |.+++++++. ++|++|++..|+||+-.+.||++|+++|+++|+.++||.+++..+.
T Consensus 122 ~l~~~gi~~~~~d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~--- 193 (396)
T COG0626 122 ILQKFGVEVTFVDPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL--- 193 (396)
T ss_pred HHHhcCeEEEEECCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc---
Confidence 555679999988753 5667777777 5999999999999999999999999999999999999999876543
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
.+....|+|++.-|..||+.|-.. .|+++.+++++.+..+.......|. -.+. -.+|
T Consensus 194 ---------q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~----------~l~p--~dA~ 252 (396)
T COG0626 194 ---------QRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA----------VLSP--FDAW 252 (396)
T ss_pred ---------cChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC----------CCCH--HHHH
Confidence 233456899999999999654433 4655555555443322221111121 1111 1567
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
..+ .|.+-+.-+.++..++|..+++.|++.|.++-++|
T Consensus 253 l~l--RGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y 290 (396)
T COG0626 253 LLL--RGLRTLALRMERHNENALKIAEFLADHPKVKKVYY 290 (396)
T ss_pred HHH--hccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 776 57788899999999999999999999998876655
No 250
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.62 E-value=5.3e-14 Score=140.59 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=152.0
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.++.++++ + ++|+|+++++.+++.++. +| +.|+++.++|+.+...++.+|++++.+|
T Consensus 61 ~Lr~aia~~~~v~~~~----I--~it~G~~~~i~~~~~~l~------~g---~~vlv~~P~y~~~~~~~~~~g~~~~~v~ 125 (360)
T PRK07392 61 ELRLALAQHHQLPPEW----I--LPGNGAAELLTWAGRELA------QL---RAVYLITPAFGDYRRALRAFGATVKELP 125 (360)
T ss_pred HHHHHHHHHhCcChhh----E--EECCCHHHHHHHHHHHhC------CC---CeEEEECCCcHHHHHHHHHcCCeEEEEe
Confidence 4555677777888876 7 899999999998887643 45 7899999999999999999999999999
Q ss_pred CCCCC-----ccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 255 VDKEF-----RADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 255 ~~~~~-----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+++++ ..|++++++.. ++++++++++|+||||.+.+.++|.++++++++ +++|++|..+... +...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-----~~~~s~ 198 (360)
T PRK07392 126 LPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-----DAEQSL 198 (360)
T ss_pred cccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccC-----ccccch
Confidence 97533 25677777654 468899999999999999999999999999985 6779999876531 000000
Q ss_pred Cc-cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FD-FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~-~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
.. .....-.++..|+.|.+. .+..+|+++..+ ++.+........|. ....+++++...+...
T Consensus 199 ~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~-~~~~~~~~~~~~~~---------------~s~~~q~~~~~~l~~~ 262 (360)
T PRK07392 199 IPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP-DRLQRWQQWRDPWP---------------VNGLAAAAAIAALADR 262 (360)
T ss_pred HHHhhcCCCEEEEEechhhhcCCchheeeeeCCH-HHHHHHHhhCCCCC---------------CCHHHHHHHHHHhccH
Confidence 11 011112366778899954 567799987754 33322111111111 1122444444444333
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 408 GY-LENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 408 g~-~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.+ +...+...+.++++.+.|++++++.+
T Consensus 263 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (360)
T PRK07392 263 DFQQQTWAWLPPAREALFQGLASLPGLTP 291 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 33 33445667778889999988877653
No 251
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=4.7e-14 Score=141.44 Aligned_cols=218 Identities=18% Similarity=0.104 Sum_probs=152.6
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.+++++++ + ++|+|+++++..++.++.+ +| +.|+++.++|+.+...++.+|.+++.+|
T Consensus 71 ~Lr~~ia~~~~~~~~~----I--~it~G~~~~l~~~~~~~~~-----~g---d~vlv~~p~y~~~~~~~~~~g~~~~~vp 136 (369)
T PRK08153 71 DLRHALAAHHGVAPEN----I--MVGEGIDGLLGLIVRLYVE-----PG---DPVVTSLGAYPTFNYHVAGFGGRLVTVP 136 (369)
T ss_pred HHHHHHHHHhCCCHHH----E--EEcCCHHHHHHHHHHHhcC-----CC---CEEEECCCcchHHHHHHHHcCCeEEEee
Confidence 5666777788888776 6 9999999999998888653 77 8999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHhh-ccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 255 VDKEFRADVKAIKKYI-NRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I-~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
.+.+ .+|++++++.+ +++++++++++|+||||.+.+.+++.++++.+ ++++++|++|+.+.. + +. .+++.
T Consensus 137 ~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~---~--~~-~~~~~ 209 (369)
T PRK08153 137 YRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAP---A--GA-APPID 209 (369)
T ss_pred CCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcC---c--cc-chhhh
Confidence 8755 48999998776 46789999999999999999988877777654 899999999976542 1 11 11222
Q ss_pred cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHH
Q 013675 332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGY 409 (438)
Q Consensus 332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~ 409 (438)
.. ..-.++..++.|... .+..+|+++.. +++.+........|. ....+++++...+. .+.+
T Consensus 210 ~~-~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~~l~~~~~~~~---------------~s~~~q~~~~~~l~~~~~~ 272 (369)
T PRK08153 210 TD-DPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIKAFDKVRNHFG---------------MNRIAQAAALAALKDQAYL 272 (369)
T ss_pred hc-CCCEEEEecchHhccCcchheeeeecC-HHHHHHHHHhhcCCC---------------CCHHHHHHHHHHhcCHHHH
Confidence 11 112466778899943 44557987764 333322111111111 01123444443343 3446
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 013675 410 LENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++..+...+..+++.+.|++.
T Consensus 273 ~~~~~~~~~~r~~~~~~L~~~ 293 (369)
T PRK08153 273 AEVVGKIAAARDRIAAIARAN 293 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 667777778888888888765
No 252
>PRK05839 hypothetical protein; Provisional
Probab=99.62 E-value=7.2e-14 Score=140.34 Aligned_cols=182 Identities=17% Similarity=0.172 Sum_probs=132.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
.|....+..++.+.+.+++.+.+|. ++++ | ++|+|+++++..++.++.. ..+| +.|+++.++|+.+
T Consensus 55 ~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~----I--~it~G~~~al~~~~~~~~~---~~~g---d~vlv~~P~y~~~ 122 (374)
T PRK05839 55 KYPKSAGEESLREAQRGFFKRRFKIELKENE----L--IPTFGTREVLFNFPQFVLF---DKQN---PTIAYPNPFYQIY 122 (374)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCcce----E--EEecCcHHHHHHHHHHHhc---CCCC---CEEEECCCCchhh
Confidence 3444456677888888899888884 5554 6 8999999999888776531 0245 8899999999999
Q ss_pred HHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg 314 (438)
...++..|++++.+|+++ ++.+|+.+.+ + ++++++++++|+||||.+.+ +++|.++|+++|+++++|.+|+.
T Consensus 123 ~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~ 199 (374)
T PRK05839 123 EGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE 199 (374)
T ss_pred HHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhh
Confidence 999999999999999975 4566655433 3 46899999999999999976 56788889999999999999986
Q ss_pred hhhhhhhhcCCCCCCC-cc------CCCCccEEEeCCCCC-CCCCCCcEEEEEeccccc
Q 013675 315 FVLPFAKKLGYPIPPF-DF------SVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIR 365 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~-~~------~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~ 365 (438)
+.. +. +.+.+ .. ...+-.++..+..|. +.++..+|+++.. +++.
T Consensus 200 ~~~---~~---~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~-~~~~ 251 (374)
T PRK05839 200 IYE---NT---PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD-ASIL 251 (374)
T ss_pred ccc---CC---CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC-HHHH
Confidence 531 00 01111 10 011224677888996 5677789997764 4444
No 253
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.61 E-value=8.2e-14 Score=135.80 Aligned_cols=219 Identities=22% Similarity=0.207 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHH--------
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAA-------- 243 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~-------- 243 (438)
..++.+.++++.+ ..+. + .|+++||||+..|++.+|.+.. +..+.+||....+ |--..-+.
T Consensus 86 ~~~la~~L~~~s~-~~d~----v--ff~NSGaEA~EaAiKlARk~~~---~~~k~~Iia~~nsFHGRT~galS~t~~~ky 155 (404)
T COG4992 86 QAELAEKLVELSP-FADR----V--FFCNSGAEANEAALKLARKYTG---DPEKSKIIAFENSFHGRTLGALSATGQPKY 155 (404)
T ss_pred HHHHHHHHHhhCc-cccE----E--EEcCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEcCCcCCccceeeeccCChhh
Confidence 4456667888886 3333 5 8999999999999999998754 2234577765554 32211111
Q ss_pred -hhcC---cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675 244 -QYFN---IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 244 -~~~G---i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
+.++ -.++.+|.+ |+++++++|+++|++|++...+-..|++-+ ++++.++|++||+.++.|+++.|+
T Consensus 156 ~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~ 230 (404)
T COG4992 156 RKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGL 230 (404)
T ss_pred ccCCCCCCCCceecCCC-----CHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCC
Confidence 1111 145666665 899999999999999999999998998865 889999999999999999999886
Q ss_pred hhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ 393 (438)
.. .|. -|.+...|| |+++.. |.+.++..+|.++.+ +.... ..++...||..|..
T Consensus 231 GR-----TGk---~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~-~~~~~-------------~~~~G~HgSTfGGN 286 (404)
T COG4992 231 GR-----TGK---LFAYEHYGVEPDILTLA--KALGGGFPIGAMLAT-EEIAS-------------AFTPGDHGSTFGGN 286 (404)
T ss_pred Cc-----cch---HHHHHHhCCCCCEEEee--ccccCCccceeeEEc-hhhhh-------------cCCCCcccCCCCcC
Confidence 53 222 133333354 888765 887777888998887 32221 13455667777766
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..++.++...+..-.-++..++..+...+|.+.|+++
T Consensus 287 pLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l 323 (404)
T COG4992 287 PLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL 323 (404)
T ss_pred HHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 5566655544433333455666777788888888764
No 254
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.61 E-value=3.6e-14 Score=146.44 Aligned_cols=186 Identities=12% Similarity=0.149 Sum_probs=133.4
Q ss_pred cccchhHHHHHHHHHHHHH-HHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 163 LDIFQSVARFEAEVIAMTA-ALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a-~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
|...++..++.+++++... +..+. ++.. ..+| ++|+|+++|+..++.++.......+| |+|+++.+.|+.+
T Consensus 130 Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~-~~~I--~vT~Ga~~al~~~~~aL~~~~ll~pG---D~Vlv~~P~y~~Y 203 (527)
T PRK09275 130 YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKG-EFDL--FAVEGGTAAMCYIFDSLKENGLLKAG---DKIALMTPIFTPY 203 (527)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCCCC-cCeE--EEeCCHHHHHHHHHHHHhhhhcCCCC---CEEEEeCCChHHH
Confidence 5566777788888777544 33322 1210 0126 89999999999998875322222478 9999999999999
Q ss_pred HHHHhhcCc--EEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHH--cCCeEEEec
Q 013675 240 DKAAQYFNI--KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALS--HGTCLHVDL 310 (438)
Q Consensus 240 ~~a~~~~Gi--~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~--~~i~lhVD~ 310 (438)
...++..|. +++.++.++ ++.+|+++++++++++|++|++++|+||||.+.+ +++|+++|++ +++++++|.
T Consensus 204 ~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DE 283 (527)
T PRK09275 204 LEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDD 283 (527)
T ss_pred HHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence 999988864 555565543 5899999999999999999999999999999987 7788888964 599999999
Q ss_pred cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR 362 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~ 362 (438)
+|+.+.-.| .+.... ...-.++..|..|.. ..+..+|+++..++
T Consensus 284 vY~~f~~~~-------~s~~~~-~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 284 VYGTFVDDF-------RSLFAV-LPYNTILVYSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred CChhhcccc-------cCHHHh-CCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence 998754211 101111 122356777889994 24455899877654
No 255
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.61 E-value=6.2e-14 Score=138.51 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..++++.+++.+|.++.+ | ++|+|+++++.+++.. . .+| +|+++.++|+.+..+++..|++++.
T Consensus 42 ~~~lr~~ia~~~~~~~~~----I--~it~Gs~~~l~~~~~~-~-----~~~----~vv~~~P~y~~y~~~~~~~G~~v~~ 105 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIK----V--LIGPGLTHFIYRLLSY-I-----NVG----NIIIVEPNFNEYKGYAFTHGIRISA 105 (332)
T ss_pred HHHHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHH-h-----CCC----cEEEeCCChHHHHHHHHHcCCeEEE
Confidence 346777899999998776 6 8999999999988753 2 133 5777799999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+|+++ ...|.+.+++ .+++++++++|+||||.+.+ +++|.++|+++|+++++|++|+.+... +. .+.
T Consensus 106 vp~~~-~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~-----~~-~~~ 175 (332)
T PRK06425 106 LPFNL-INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPN-----RA-EED 175 (332)
T ss_pred EeCCc-ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccc-----cc-hhH
Confidence 99975 4456666653 37889999999999999977 567777889999999999999866421 00 000
Q ss_pred Ccc-CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHH
Q 013675 330 FDF-SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQE 407 (438)
Q Consensus 330 ~~~-~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~ 407 (438)
... ....-.++..++.|... .+..+|+++.. +++.+........|... .+ ++ .++.....+
T Consensus 176 ~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~~~~~~--------------~~-~~-~~l~~~~~~ 238 (332)
T PRK06425 176 VLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITEPWSVC--------------DP-AI-DFIRSIDLD 238 (332)
T ss_pred HHHhccCCCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCCCCccC--------------HH-HH-HHHHHhhhH
Confidence 000 01122467778899844 44568997765 44433221111112110 11 11 122222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 408 G-YLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 408 g-~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
. .++..+...+..+++.+.|+++ +++
T Consensus 239 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 265 (332)
T PRK06425 239 YVAKHSLDIMENERSYLINNLEAM-GFR 265 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 3 2456677778888888888876 443
No 256
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.60 E-value=5.2e-14 Score=145.09 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhCC---CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675 170 ARFEAEVIAMTAALLGN---KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~---~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
...++.+.+++.+.++. ++++ .++ ++|+|+++|+..++.++.......+| |+|+++.+.|+.+...++..
T Consensus 132 ~~~e~iv~~y~~~~~~~~~~~~~~--~~V--~it~Gat~al~~~~~~l~~~~ll~pG---D~Vlv~~P~y~~y~~~~~l~ 204 (521)
T TIGR03801 132 PHSEKIVHQYLIQEMCGNKPPPGE--FDL--FAVEGGTAAMCYIFDSLKANELLKKG---DKIALMTPIFTPYLEIPELP 204 (521)
T ss_pred HHHHHHHHHHHHhhccCCCCCCCc--CeE--EEeCCHHHHHHHHHHHHhHhhcCCCC---CEEEEeCCCcHHHHHHHHHh
Confidence 33444444566655443 2220 026 89999999999998875332223477 99999999999999998876
Q ss_pred --CcEEEEeeCCC--C-----CccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHc--CCeEEEeccc
Q 013675 247 --NIKLWRVPVDK--E-----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSH--GTCLHVDLCL 312 (438)
Q Consensus 247 --Gi~v~~v~~~~--~-----~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~--~i~lhVD~a~ 312 (438)
|++++.+++++ + +.+|.++++++++++|+++++++|+||||.+.+ +++|+++|+++ ++++++|.+|
T Consensus 205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY 284 (521)
T TIGR03801 205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVY 284 (521)
T ss_pred cCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCc
Confidence 67888888763 2 789999999999999999999999999999977 67888889986 8999999999
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-LAPKGTSVVLYRNR 362 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~-~~p~g~g~l~~r~~ 362 (438)
+.+.-.|. +.... ...-.++..|..|.. ..+..+|+++..++
T Consensus 285 ~~f~~~~~-------sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 285 GTFVDDFR-------SLFAE-LPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred hhhccccc-------chhhh-CCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 87653211 01111 122357777889984 34566999887654
No 257
>PLN02452 phosphoserine transaminase
Probab=99.60 E-value=2.8e-14 Score=141.84 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=169.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc--HH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA--YD 240 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s--~~ 240 (438)
...++.+.++.+++++.+.++++.|.+.. +-+++.|||.++.+++..+.. +| +++++-.+...+ +.
T Consensus 44 sHRs~~f~~i~~~~~~~L~~l~~~p~~y~----v~~l~Gsgt~~~ea~~~nl~~-----~~---~~~l~~~~G~fg~r~~ 111 (365)
T PLN02452 44 SHRGKEFLSIIQKAEADLRELLDIPDNYE----VLFLQGGASTQFAAIPLNLCK-----PG---DKADFVVTGSWSKKAA 111 (365)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCCce----EEEEeCccHHHHHHHHHhcCC-----CC---CeEEEEECCHHHHHHH
Confidence 34578889999999999999999865421 336679999999998888753 45 566666666555 67
Q ss_pred HHHhhcCcEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 241 KAAQYFNIKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGI-IDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+.++.+|...+.....+ ....|+++++ .+++...|.+++.+|.+|+ +.|++++.+ ++++||++++.+.
T Consensus 112 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~ 183 (365)
T PLN02452 112 KEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLS 183 (365)
T ss_pred HHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccC
Confidence 78888887444332222 2246777653 2456889999999999999 588888753 8999999965333
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh--cccccCCCccCCCCccCCCCCchH
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV--AVTEWSGGLYVSPTVAGSRPGGLI 394 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~--~~~~~~g~~~~~~~~~gsr~~~~i 394 (438)
. ++|....++|+ .++||. ++|+|.|++++|++.+.+.... ...+|... ....+..++.+...+
T Consensus 184 ~-----------pidv~~~~v~~--~saqK~-lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~-~~~~s~~~TP~v~~i 248 (365)
T PLN02452 184 K-----------PVDVSKYGVIY--AGAQKN-VGPSGVTIVIIRKDLIGNARPITPGMLDYKIH-AENDSLYNTPPCFGI 248 (365)
T ss_pred c-----------ccCHHHcCEEE--Eecccc-cCCCCeEEEEEcHHHHhhcccCCCchhhHHHH-HhcCCccCChhHHHH
Confidence 3 57777778766 599998 5899999999987655332110 00111100 001133356666778
Q ss_pred HHHHHHHHHHcHH-HHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 395 AGAWAALMSLGQE-GYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 395 a~~~aal~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
+++..+++++-++ |++.+.++..++++++++.|++.+|+
T Consensus 249 ~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 249 YMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8999999999776 89999999999999999999998876
No 258
>PLN02672 methionine S-methyltransferase
Probab=99.60 E-value=2.9e-13 Score=148.27 Aligned_cols=239 Identities=13% Similarity=0.154 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
++...+++++++.+|++.+. ..++ ++|+|+++++..++.++.+ +| |+|+++.++|+.+..+++..|+++
T Consensus 734 dlr~aLa~~la~~~Gv~~d~-~e~I--Ivt~Gs~elL~lll~aLl~-----pG---D~VLVp~PtY~~Y~~~a~~~Ga~v 802 (1082)
T PLN02672 734 DPRPSILQFIKSNYGFPTDS-CTEF--VYGDTSLALFNKLVLCCVQ-----EG---GTLCFPAGSNGTYVSAAKFLKANF 802 (1082)
T ss_pred HHHHHHHHHHHHHhCcCCCC-CCEE--EEeCCHHHHHHHHHHHHcC-----CC---CEEEEeCCChHHHHHHHHHcCCEE
Confidence 45678899999999987541 0125 7889988888888888764 77 999999999999999999999999
Q ss_pred EEeeCCC--CCccCHHHHHHhhcc-CcEEEEEecCC-CCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 251 WRVPVDK--EFRADVKAIKKYINR-NTVLIVGSAPG-FPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 251 ~~v~~~~--~~~~d~~~Le~~I~~-~t~~vv~~~~~-~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
+.+|+++ ++.+|++++++++++ ++.++++++|+ ||||.+.+ +++|.++|++||+++++|.+|+.+...- ...
T Consensus 803 v~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~-~~~ 881 (1082)
T PLN02672 803 RRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDT-SGW 881 (1082)
T ss_pred EEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCC-CCC
Confidence 9999974 688999999999976 45689999998 99999966 6788889999999999999997654310 000
Q ss_pred C-CCCCCCccCCC-----CccEEEeCCC-CCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHH
Q 013675 324 G-YPIPPFDFSVQ-----GVTSISVDVH-KYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396 (438)
Q Consensus 324 g-~~~p~~~~~~~-----gvdsis~s~h-K~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~ 396 (438)
. ...++.-.... ..-++..+.. |++.++..+|+++..++++.+...... .. ..+ ......+
T Consensus 882 s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~-~~-----s~~------~~~~q~A 949 (1082)
T PLN02672 882 GGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAP-GL-----SRP------HSTLKYT 949 (1082)
T ss_pred cccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhh-hh-----cCC------CcHHHHH
Confidence 0 00000000000 1124455777 555666779998876554443221110 00 000 0011112
Q ss_pred HHHHHHHHc------HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 397 AWAALMSLG------QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 397 ~~aal~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+.+++..+. .+.+.+..+...+..+++.+.|++. |++
T Consensus 950 aaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~ 992 (1082)
T PLN02672 950 IKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWD 992 (1082)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 223232121 2345566677888889999999875 443
No 259
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.60 E-value=1.7e-13 Score=138.35 Aligned_cols=221 Identities=15% Similarity=0.136 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...++.+.+++++|.+.. ++.++|+.++..++.++. ++| |+|++++..|+++...+...+.+++
T Consensus 44 ~~~~LE~~lA~~~g~e~a--------l~~~sG~~a~~~~i~~l~-----~~G---D~Vl~~~~~h~s~~~~~~l~~~~~~ 107 (392)
T PLN03227 44 AHLELEQCMAEFLGTESA--------ILYSDGASTTSSTVAAFA-----KRG---DLLVVDRGVNEALLVGVSLSRANVR 107 (392)
T ss_pred HHHHHHHHHHHHhCCCcE--------EEecCcHHHHHHHHHHhC-----CCC---CEEEEeccccHHHHHHHHHcCCeEE
Confidence 455566679999998632 566667777777777764 378 9999999999999988888888888
Q ss_pred EeeCCCCCccCHHHHHHhhc-----------cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh---
Q 013675 252 RVPVDKEFRADVKAIKKYIN-----------RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL--- 317 (438)
Q Consensus 252 ~v~~~~~~~~d~~~Le~~I~-----------~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~--- 317 (438)
.++.++ .-|++.+.+.+. ++|++|++..+.+++|.+.|+++|.++|++||+++++|++++....
T Consensus 108 ~~~~~d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~ 185 (392)
T PLN03227 108 WFRHND--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKS 185 (392)
T ss_pred EeCCCC--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCC
Confidence 777642 113333333442 3588999999999999999999999999999999999999862211
Q ss_pred --hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 318 --PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 318 --pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
...+..| +++ ..++|+++.+.+|+ ++|.| |+++.+ +++.+..... ..+. +..++-+....+
T Consensus 186 G~g~~~~~g--~~p----~~~~Div~~slsk~-~g~~g-g~v~~~-~~~~~~~~~~---~~~~-----~~~~~~~p~~~~ 248 (392)
T PLN03227 186 GRGSLEHAG--LKP----MVHAEIVTFSLENA-FGSVG-GMTVGS-EEVVDHQRLS---GSGY-----CFSASAPPFLAK 248 (392)
T ss_pred CCcHHHHcC--CCC----CCCceEEEeechhh-hhccC-cEEecC-HHHHHHHHHh---CcCc-----cccCCCCHHHHH
Confidence 0111112 111 34789999999998 56665 454444 3333211100 0011 111111111122
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+..+++... ...++..++..++++++++.|++
T Consensus 249 aa~~al~~~--~~~~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 249 ADATATAGE--LAGPQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred HHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHh
Confidence 222333222 12356778888999999999974
No 260
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.59 E-value=1.3e-15 Score=146.44 Aligned_cols=232 Identities=23% Similarity=0.274 Sum_probs=151.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
|...+.+.++++ .+++++|.+.. +|+.+||.||.+++++... ++ +.|++..++|..+.+.
T Consensus 25 Yg~D~~~~~l~~----~i~~l~g~e~a--------~f~~sGT~An~~al~~~~~-----~~---~~vi~~~~aHi~~~E~ 84 (290)
T PF01212_consen 25 YGEDPTTARLEE----RIAELFGKEAA--------LFVPSGTMANQLALRAHLR-----PG---ESVICADTAHIHFDET 84 (290)
T ss_dssp TTSSHHHHHHHH----HHHHHHTSSEE--------EEESSHHHHHHHHHHHHHH-----TT---EEEEEETTEHHHHSST
T ss_pred cCCChhHHHHHH----HHHHHcCCCEE--------EEeCCCChHHHHHHHHHHh-----cC---Cceeccccceeeeecc
Confidence 444555555554 68899999742 7999999999999999873 56 7899999999876543
Q ss_pred ---HhhcCcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCC-ccccC---HHHHHHHHHHcCCeEEEe
Q 013675 243 ---AQYFNIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPH-GIIDP---IQELGELALSHGTCLHVD 309 (438)
Q Consensus 243 ---~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~t-G~idd---i~~I~~la~~~~i~lhVD 309 (438)
....|++++.++.++++.+|+++|++.+++ ++.+|+++++++.. |++.+ +++|.++||++|+++|.|
T Consensus 85 ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD 164 (290)
T PF01212_consen 85 GAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD 164 (290)
T ss_dssp THHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE
T ss_pred chhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe
Confidence 245699999999876699999999999975 47899999998853 77654 778899999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr 389 (438)
|+--+-... ..+. ....-..++|+++++++|.|.+|.| ++++.++ +......... ...|+... .
T Consensus 165 GARl~~a~~---~~~~---~~~e~~~~~D~v~~~~tK~~g~~~G-avl~~~~-~~i~~~~~~~-k~~gg~~~-------~ 228 (290)
T PF01212_consen 165 GARLANAAA---ALGV---SLAEIAAGADSVSFGGTKNGGAPGG-AVLAGNK-EFIAKARRQR-KRLGGGMR-------Q 228 (290)
T ss_dssp ETTHHHHHC---HHHH---HHHHHHTTSSEEEEETTSTT-SSSE-EEEEESH-HHHHHHHHHH-HHHTHHHH-------H
T ss_pred hhhHHHhhh---cccc---cHHHHhhhCCEEEEEEEcccccccc-eEEEech-HHHHHHHHHH-HHhccCee-------e
Confidence 995322221 0111 1112236789999999999777765 5555554 4322211111 01121100 0
Q ss_pred CCchHHH--HH--HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 390 PGGLIAG--AW--AALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 390 ~~~~ia~--~~--aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
.| .+++ ++ .++.. .+...+...+..+++++|++.|+.+++.
T Consensus 229 ~G-~~~a~~~~~~~~l~~--l~~~~~~~~~~~~~A~~La~~l~~~~~~ 273 (290)
T PF01212_consen 229 AG-VLAAAELYQFAALRA--LELWLERARHANAMAKRLAAGLEALGGV 273 (290)
T ss_dssp TT-HHHHHHHHHHHHHCH--EECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred cc-eeeeechhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 11 1222 11 22211 1223667788889999999999988653
No 261
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.59 E-value=1.1e-13 Score=138.71 Aligned_cols=237 Identities=15% Similarity=0.066 Sum_probs=151.9
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
|..+|.+.++|++ +++++|.+. + +.|++||.|+.++..... ++| ++| +...|..-.++
T Consensus 74 Yagd~s~~~LE~~----vAe~lG~e~------a--V~v~sGTaAl~ll~~l~v-----~pG---d~V--p~n~~f~Tt~a 131 (460)
T PRK13237 74 YAGSRNFYHLEET----VQEYYGFKH------V--VPTHQGRGAENLLSRIAI-----KPG---QYV--PGNMYFTTTRY 131 (460)
T ss_pred hcCCCcHHHHHHH----HHHHHCCCe------E--EEeCCHHHHHHHHHHhCC-----CCc---CEE--CCccchHhhHH
Confidence 5567788888875 778889874 2 899999999998533221 356 643 77777766665
Q ss_pred -HhhcCcEEEEeeCC---------C-CCccCHHHHHHhhccC----cEEEEEecCCCCC-ccc---cCHHHHHHHHHHcC
Q 013675 243 -AQYFNIKLWRVPVD---------K-EFRADVKAIKKYINRN----TVLIVGSAPGFPH-GII---DPIQELGELALSHG 303 (438)
Q Consensus 243 -~~~~Gi~v~~v~~~---------~-~~~~d~~~Le~~I~~~----t~~vv~~~~~~~t-G~i---ddi~~I~~la~~~~ 303 (438)
....|...+-++.+ + +|.+|+++++++|+++ +.++.+..++|.. |.. +++++|.++|++||
T Consensus 132 hI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~G 211 (460)
T PRK13237 132 HQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHG 211 (460)
T ss_pred HHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcC
Confidence 67778755544311 3 7899999999999864 4466777777777 444 47899999999999
Q ss_pred CeEEEeccccchhhhhhhh--cCCCCCCC----ccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCC
Q 013675 304 TCLHVDLCLGGFVLPFAKK--LGYPIPPF----DFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSG 377 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~--~g~~~p~~----~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g 377 (438)
+++|.|+|......-|.+. .|+.-.+. .......|.+++|+||.+.+|.| |+++++|+++.+........|.|
T Consensus 212 l~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG 290 (460)
T PRK13237 212 IKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEG 290 (460)
T ss_pred CEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCC
Confidence 9999999975332212211 12100000 00122469999999999888875 88899998877654433333333
Q ss_pred CccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 378 GLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 378 ~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.. ..|.-.+--+.++..++...-.. +..++....+++|.+.|.+.
T Consensus 291 ~~-----tygg~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~ 335 (460)
T PRK13237 291 MP-----SYGGMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAA 335 (460)
T ss_pred Cc-----CCCChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHC
Confidence 21 11112221233444444322111 66677778889999998764
No 262
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.59 E-value=1.2e-13 Score=137.81 Aligned_cols=217 Identities=18% Similarity=0.183 Sum_probs=148.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.++.++++ + ++|+|+++++.++++++.+ +| ++|+++.++|..+...+...|.+++.+|
T Consensus 69 ~lr~~ia~~~~~~~~~----I--~it~G~~~al~~~~~~~~~-----~g---d~V~v~~P~y~~~~~~~~~~g~~~~~~~ 134 (357)
T PRK14809 69 DLTAALADRWDVSPEQ----V--WLANGGDGALDYLARAMLD-----PG---DTVLVPDPGFAYYGMSARYHHGEVREYP 134 (357)
T ss_pred HHHHHHHHHhCCCcce----E--EECCCHHHHHHHHHHHhcC-----CC---CEEEEeCCChHHHHHHHHHcCCeEEEEe
Confidence 4566677778888776 6 8999999999999888753 77 8999999999988888899999999999
Q ss_pred CCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 255 VDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 255 ~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
++. ++.+|++++++.+ ++++++++++|+||||.+.+.+++.++++.. ++++++|++|+.+... +...+..
T Consensus 135 l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-----~~~~~~~ 208 (357)
T PRK14809 135 VSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-----PSAVALV 208 (357)
T ss_pred cccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-----chhHHHH
Confidence 864 5678888888776 4688999999999999999988777777654 7899999999865421 0000001
Q ss_pred ccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHH
Q 013675 331 DFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g 408 (438)
+ ...-.++..++.|.+. .+..+|+++..+ ++.+........|. ....++.+++..+. .+.
T Consensus 209 ~--~~~~vi~~~SfSK~~~~~GlRiG~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~a~~~l~~~~~ 270 (357)
T PRK14809 209 E--ERDDVAVLRTFSKAYGLAGLRLGYAVVPE-EWADAYARVNTPFA---------------ASELACRAGLAALDDDEH 270 (357)
T ss_pred h--hCCCEEEEecchhHhcCcchhheeeecCH-HHHHHHHHhCCCCC---------------CCHHHHHHHHHHhCCHHH
Confidence 1 1112356678889953 445689987754 33332111111110 01123444444443 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013675 409 YLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+++..+...+..+++.+.|..
T Consensus 271 ~~~~~~~~~~~r~~l~~~L~~ 291 (357)
T PRK14809 271 VERTVETARWAREYIREELDA 291 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 556666666777777777754
No 263
>PRK10534 L-threonine aldolase; Provisional
Probab=99.59 E-value=8.6e-14 Score=137.44 Aligned_cols=228 Identities=20% Similarity=0.145 Sum_probs=139.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
|...+...++++ .+++++|.++. +++.||++++..++.+.. .+| ++|+++.+.|.....+
T Consensus 30 Y~~~~~~~~L~~----~la~~~g~~~~--------~v~~~g~~a~~~~l~~~~-----~~g---d~vi~~~~~~~~~~~~ 89 (333)
T PRK10534 30 YGDDPTVNALQD----YAAELSGKEAA--------LFLPTGTQANLVALLSHC-----ERG---EEYIVGQAAHNYLYEA 89 (333)
T ss_pred cCCCHHHHHHHH----HHHHHhCCCeE--------EEeCchHHHHHHHHHHhc-----CCC---CeeEEechhhhhHhcC
Confidence 334455555555 57888898642 688999999998888764 367 8899988888543322
Q ss_pred --HhhcC-cEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHH---HHHHHHHHcCCeEEEec
Q 013675 243 --AQYFN-IKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDL 310 (438)
Q Consensus 243 --~~~~G-i~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~ 310 (438)
+...| ++++.+++++++.+|+++|++++++ +|++|++++|+ +|.+.|.+ +|.++|+++++++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDE 167 (333)
T PRK10534 90 GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDG 167 (333)
T ss_pred CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeH
Confidence 34444 7888888888899999999999976 58899998765 59997765 55678899999999999
Q ss_pred cccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 311 a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~ 390 (438)
||.-+... ..+. .........|.++++++|....+ .|+.++.++++.+........|.++. ..
T Consensus 168 A~~~~~~~---~~~~---~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~~~~~---------~~ 230 (333)
T PRK10534 168 ARIFNAVV---AYGC---ELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMTGGGM---------RQ 230 (333)
T ss_pred HHHHHHHH---HcCC---CHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHhCCch---------hh
Confidence 97521110 0011 11101122355566789974434 56444556665443222111111110 00
Q ss_pred CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+. .+.+++..+ +...+..++..+.++++.+.|+++ |++
T Consensus 231 ~~~--~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 269 (333)
T PRK10534 231 AGI--LAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GAD 269 (333)
T ss_pred HHH--HHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 111 222233222 112344455566778899999876 554
No 264
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.58 E-value=4.4e-13 Score=132.85 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec---CCCcCcHHHHHhh
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP---VSAHSAYDKAAQY 245 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~---~~~h~s~~~a~~~ 245 (438)
..++.+++.+.+++++|.++++ + ++++||++||..++.++.+ +| ++|+++ .+.|+++...++.
T Consensus 52 ~~~~~~~Le~~lA~~~g~~~e~----i--lv~~gg~~a~~~~~~al~~-----~g---d~Vli~~~d~p~~~s~~~~~~l 117 (346)
T TIGR03576 52 PAIFEEKVQELGREHLGGPEEK----I--LVFNRTSSAILATILALEP-----PG---RKVVHYLPEKPAHPSIPRSCKL 117 (346)
T ss_pred CHHHHHHHHHHHHHHcCCCcce----E--EEECCHHHHHHHHHHHhCC-----CC---CEEEECCCCCCCchhHHHHHHH
Confidence 3477888888999999997765 5 8999999999999998863 67 889864 4699999999999
Q ss_pred cCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 246 FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 246 ~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
.|.++... .|+++++. .+++++|+++ +++++|.+ .|+++|+++|+++|++++||++|+.++...
T Consensus 118 ~ga~~~~~-------~~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~--- 184 (346)
T TIGR03576 118 AGAEYFES-------DELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRL--- 184 (346)
T ss_pred cCCEEecc-------CCHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcccccccc---
Confidence 99986432 14555543 3567777775 46889998 789999999999999999999998665320
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccc
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRK 366 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~ 366 (438)
.|. . + ....++|++..+++|++.|+. .|+++.+ +++.+
T Consensus 185 ~~~-~-~--~~~~~~divv~s~SKalaG~r-~G~v~~~-~~li~ 222 (346)
T TIGR03576 185 YGQ-P-P--ALDLGADLVVTSTDKLMDGPR-GGLLAGR-KELVD 222 (346)
T ss_pred CCC-C-C--HHHcCCcEEEeccchhccccc-eEEEEeC-HHHHH
Confidence 111 0 1 112257888999999743554 5876655 44443
No 265
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.58 E-value=4.5e-13 Score=136.04 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLW 251 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~ 251 (438)
...++.+.+++++|.+. . +++++|++|+..++.++... .+| +.|+.....|.++..+++..|.+++
T Consensus 91 ~~~~le~~la~~~g~~~------~--~~~~SG~~An~~ai~~l~~~---~~g---~~I~~~~~~H~s~~~~~~~~g~~~~ 156 (406)
T PRK13393 91 YHVLLEAELADLHGKEA------A--LLFTSGYVSNWAALSTLGSR---LPG---CVILSDELNHASMIEGIRHSRAEKR 156 (406)
T ss_pred HHHHHHHHHHHHhCCCc------E--EEeCCcHHHHHHHHHHhhcC---CCC---CEEEEccchhHHHHHHHHHcCCeEE
Confidence 45566678999998642 2 66667788999999865421 134 6777888899999999988898888
Q ss_pred EeeCCCCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcCCC
Q 013675 252 RVPVDKEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLGYP 326 (438)
Q Consensus 252 ~v~~~~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g~~ 326 (438)
.++.. |++++++.++ +++++|+++++++++|.+.|+++|.++|+++|+++++|++++.++ -|.- .|.
T Consensus 157 ~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G--~g~- 228 (406)
T PRK13393 157 IFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRG--GGI- 228 (406)
T ss_pred EeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCC--Cch-
Confidence 77743 6777777764 357899999999999999999999999999999999999987332 2210 010
Q ss_pred CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH
Q 013675 327 IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406 (438)
Q Consensus 327 ~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~ 406 (438)
....+ ....+|++..+..|. ++..| |+++. ++++..........| ...++.+....+++.++++.+..
T Consensus 229 ~~~~~-~~~~~~i~~~tlsKa-~g~~G-G~~~~-~~~~~~~l~~~~~~~--------~~t~~~~p~~~aa~~aaL~~~~~ 296 (406)
T PRK13393 229 AEREG-LADRLTIIEGTLAKA-FGVMG-GYITG-SAALCDFIRSFASGF--------IFTTSLPPAVAAGALASVRHLKA 296 (406)
T ss_pred hhhcC-CCCCCeEEEEeCchh-hcccC-ceeeC-CHHHHHHHHHhCcCc--------eecCccCHHHHHHHHHHHHHHhh
Confidence 00011 112357887889999 45444 66543 344332211110000 01112222334566677765533
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 407 EGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 407 ~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.+ ...++..++++++.+.|+++
T Consensus 297 ~~--~~~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 297 SS--AERERHQDRVARLRARLDKA 318 (406)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHc
Confidence 32 22355677888999988764
No 266
>PRK08637 hypothetical protein; Provisional
Probab=99.57 E-value=4.6e-13 Score=135.15 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~ 222 (438)
....+.+++........+.|...+|..++.+.+.+++.+..+ .++.+ -.++ ++|+|+++++.+++.++.+ +
T Consensus 21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-~~~I--~it~G~~~al~~~~~~l~~-----~ 92 (388)
T PRK08637 21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKK-MSLP--IVTNALTHGLSLVADLFVD-----Q 92 (388)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccc-ccee--eEccchHHHHHHHHHHhcC-----C
Confidence 445555555543333344565667777777777666665432 22210 0125 8999999999999988763 6
Q ss_pred CCCCCeEEecCCCcCcHHHHH-hhcCcEEEEeeCC-CCCccCHHHHHHhhc----cCcEEEEEecCCCCCccccC---HH
Q 013675 223 GITRPEMIIPVSAHSAYDKAA-QYFNIKLWRVPVD-KEFRADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP---IQ 293 (438)
Q Consensus 223 G~~~~~Viv~~~~h~s~~~a~-~~~Gi~v~~v~~~-~~~~~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd---i~ 293 (438)
| |+|+++.++|+.+..++ ...|++++.+|++ +++.+|+++++++++ +.+.++++++|+||||.+.+ ++
T Consensus 93 g---d~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~ 169 (388)
T PRK08637 93 G---DTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEAT 169 (388)
T ss_pred C---CEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHH
Confidence 7 89999999999999875 4689999999984 566799999999987 45667888999999999876 56
Q ss_pred HHHHHHHH-----cCCeEEEeccccchhhhhhhhcCCCCCCC-cc---CCCCccEE-EeCCCCC-CCCCCCcEEEEEe
Q 013675 294 ELGELALS-----HGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DF---SVQGVTSI-SVDVHKY-GLAPKGTSVVLYR 360 (438)
Q Consensus 294 ~I~~la~~-----~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~---~~~gvdsi-s~s~hK~-~~~p~g~g~l~~r 360 (438)
+|+++|++ |++++++|.+|..+... . ...+++ .. ....+-.+ +.++.|. +.....+|++++.
T Consensus 170 ~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~--~---~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 170 AIVEAIKELADAGTKVVAVVDDAYFGLFYE--D---SYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred HHHHHHHHHHhcCCcEEEEecccchhcccC--C---ccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 77777765 89999999999876431 1 001111 10 11123222 3377784 5566779998865
No 267
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.57 E-value=1.1e-13 Score=140.78 Aligned_cols=229 Identities=21% Similarity=0.156 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc-HHHHHhhc--
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA-YDKAAQYF-- 246 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s-~~~a~~~~-- 246 (438)
.+...++.+.++++++.+.+. + ++++|||+|+..++++++... .+ ++|++.+..|.. ...+....
T Consensus 78 ~~~~~~l~~~l~~~~~~~~~~----v--~~~~sgsea~~~al~~~~~~~---~~---~~ii~~~~~yhg~~~~~~~~~~~ 145 (413)
T cd00610 78 NEPAVELAELLLALTPEGLDK----V--FFVNSGTEAVEAALKLARAYT---GR---KKIISFEGAYHGRTLGALSLTGS 145 (413)
T ss_pred CHHHHHHHHHHHHhCCCCCCE----E--EEcCcHHHHHHHHHHHHHHHc---CC---CeEEEECCCcCCccHHHHHhcCC
Confidence 456777888899999865444 5 899999999999999987531 23 678887765444 33333322
Q ss_pred ----------CcEEEEeeCCC------CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675 247 ----------NIKLWRVPVDK------EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (438)
Q Consensus 247 ----------Gi~v~~v~~~~------~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~ 303 (438)
+.+++.+|.++ ++..|+++|++.+++ ++++++++..++++|.+.| +++|.++|++||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (413)
T cd00610 146 KKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHG 225 (413)
T ss_pred ccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 22466677652 345599999999976 5778888887888899877 999999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCC
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 383 (438)
+++++|++++++.. .|... .++......|.++++ |++.++..+|+++.+ +++.+.. .+... ....
T Consensus 226 ~~li~Dev~~g~g~-----~g~~~-~~~~~~~~~d~~t~s--K~l~~g~~~g~~~~~-~~~~~~~-----~~~~~-~~~~ 290 (413)
T cd00610 226 ILLIADEVQTGFGR-----TGKMF-AFEHFGVEPDIVTLG--KGLGGGLPLGAVLGR-EEIMDAF-----PAGPG-LHGG 290 (413)
T ss_pred CEEEEeccccCCCc-----Ccchh-hHhhcCCCCCeEEEc--ccccCccccEEEEEc-HHHHHhh-----ccCCC-CCCC
Confidence 99999999987522 01000 011111123666554 997666778988765 4333221 00000 0000
Q ss_pred CccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 384 ~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+. +.+....+++.++++.+.. .+..++..++.+++.+.|+++
T Consensus 291 t~--~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~ 332 (413)
T cd00610 291 TF--GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLREL 332 (413)
T ss_pred CC--CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 11 1111224456666766543 355677777788888877654
No 268
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.57 E-value=1.4e-13 Score=134.56 Aligned_cols=216 Identities=20% Similarity=0.102 Sum_probs=160.8
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc----HHHHHhhcCcEE
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKL 250 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s----~~~a~~~~Gi~v 250 (438)
.+.+.++.+-|++.. +.+++|..|+..+++.+.. .| ++|++....|.. +.+....+|++.
T Consensus 81 ~le~~iaal~ga~~~--------l~fsSGmaA~~~al~~L~~-----~g---~~iV~~~~~Y~gT~~~l~~~~~~~gie~ 144 (409)
T KOG0053|consen 81 VLESGIAALEGAAHA--------LLFSSGMAAITVALLHLLP-----AG---DHIVATGDVYGGTLRILRKFLPKFGGEG 144 (409)
T ss_pred HHHHHHHHHhCCceE--------EEecccHHHHHHHHHHhcC-----CC---CcEEEeCCCcccHHHHHHHHHHHhCcee
Confidence 344468888888742 7788899999999988773 66 889998877766 455666779999
Q ss_pred EEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 251 WRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 251 ~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
..++++ |+++++++++++|.+|.+..|+||+..+-||++|+++||++|+.++||..+++++. .
T Consensus 145 ~~vd~~-----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~------------~ 207 (409)
T KOG0053|consen 145 DFVDVD-----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN------------Q 207 (409)
T ss_pred eeechh-----hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc------------c
Confidence 999876 79999999999999999999999999999999999999999999999999886532 3
Q ss_pred ccCCCCccEEEeCCCCCCCCCCC--cEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 331 DFSVQGVTSISVDVHKYGLAPKG--TSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 331 ~~~~~gvdsis~s~hK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
+....|+|+++-|..||..|-.. .|++..+.+++.+..+... ...| .-+.+ ..+|..+ -|.+.
T Consensus 208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-~~lg----------~~~~p--~~~~ll~--Rglkt 272 (409)
T KOG0053|consen 208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ-EDLG----------WCEDP--FDLFLLS--RGLKT 272 (409)
T ss_pred ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH-HHhc----------CCCCH--HHHHHHh--cCcch
Confidence 44556899999999999544433 5666666454433322221 1111 11222 2566555 35566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCC
Q 013675 409 YLENTKAIMEVSESIQKGLVLFPMFLPPLF 438 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~l~ 438 (438)
+.-++++..+++..+++.|++.|.++-++|
T Consensus 273 l~lRi~~~~ena~~~A~~Le~~~~v~kv~Y 302 (409)
T KOG0053|consen 273 LHLRINKHSENALKIALLLEAHPKVKKVYY 302 (409)
T ss_pred hhhhHHHHHHHHHHHHHHhhhCCceeEEEc
Confidence 677778888888889999988887775444
No 269
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.56 E-value=3.6e-13 Score=134.79 Aligned_cols=228 Identities=15% Similarity=0.113 Sum_probs=148.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
.|....+..++.+.+.+++.+..|.+ +++ + ++|+|+++++..++.++.- ++| ++|+++.++|+.
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~----I--~it~G~~~~i~~~~~~l~~----~~g---d~Vl~~~p~y~~ 123 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAA----V--LPVIGSKELVAWLPTLLGL----GPG---DVVVIPELAYPT 123 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCCccc----E--EEccChHHHHHHHHHHHcC----CCC---CEEEECCCCccc
Confidence 34445667778888888888877754 554 6 8999999999887666521 267 899999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccch
Q 013675 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
+..+++.+|++++.++. +++++ .+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+
T Consensus 124 ~~~~~~~~g~~~~~~~~-------~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 193 (364)
T PRK07865 124 YEVGARLAGATVVRADS-------LTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLEL 193 (364)
T ss_pred HHHHHHhcCCEEEecCC-------hhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhh
Confidence 99999999999888752 23332 257899999999999998866 578888999999999999999865
Q ss_pred hhhhhhhcCCCCCCCccC----CCCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcc--cccCCCccCCCCccCC
Q 013675 316 VLPFAKKLGYPIPPFDFS----VQGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAV--TEWSGGLYVSPTVAGS 388 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~----~~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~--~~~~g~~~~~~~~~gs 388 (438)
... +.....++.. ...-.+++.+..|.. ..+..+|+++. ++++........ ..|.
T Consensus 194 ~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~------------ 255 (364)
T PRK07865 194 GWD-----AEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGMM------------ 255 (364)
T ss_pred ccC-----CCCCccccccccCCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHHHHhcCCC------------
Confidence 431 0001111111 112257888999984 34455888755 444433221111 0110
Q ss_pred CCCchHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 389 RPGGLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
-+. . .+.++...+. .+..++..+...+..+.+.+.|++. |+.
T Consensus 256 ~~~-~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 298 (364)
T PRK07865 256 VPA-P--VQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFR 298 (364)
T ss_pred cCH-H--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 011 1 2222222232 2345566677778888888888765 443
No 270
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.56 E-value=7.7e-13 Score=134.10 Aligned_cols=220 Identities=22% Similarity=0.188 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcC--
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFN-- 247 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~G-- 247 (438)
..++.+.++++++.+ . + +++++||+|+..|+++++.+....+|.+ +++|++.... |.+...+. ..+
T Consensus 85 ~~~l~~~l~~~~~~~--~----~--~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~ 155 (401)
T PRK00854 85 LAPLYEELAALTGSH--K----V--LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTD 155 (401)
T ss_pred HHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCC
Confidence 344555677887764 2 4 8999999999999999987532222332 3567666554 55433322 211
Q ss_pred -----------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccc
Q 013675 248 -----------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 248 -----------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~ 312 (438)
.++..+|. .|+++++++|++++++|+++++++|+|.+.| +++|+++|++||+++++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~ 230 (401)
T PRK00854 156 PDARGGFGPFTPGFRVVPF-----GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQ 230 (401)
T ss_pred ccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 12333332 4899999999999999999999999999987 999999999999999999999
Q ss_pred cchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCccCCCCccCCC
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr 389 (438)
+|+.. .|. .+..... ..|.++++ |++.+.. .+|+++.+++ +.... . ....+. +..+
T Consensus 231 ~g~g~-----~g~---~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~-~~~~l-~--~~~~~~-----t~~~-- 289 (401)
T PRK00854 231 TGLGR-----TGK---LLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSE-VLGVL-K--PGQHGS-----TFGG-- 289 (401)
T ss_pred hCCCC-----Cch---HhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHH-HHhcc-c--CCCCCC-----CCCc--
Confidence 76432 010 0111111 24777764 8865542 4677777644 22211 0 000111 1111
Q ss_pred CCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 390 ~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+....++..++|+.+.. .+..++..++++++.+.|+++
T Consensus 290 ~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~ 327 (401)
T PRK00854 290 NPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI 327 (401)
T ss_pred CHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh
Confidence 11112334444443322 335677778888888888775
No 271
>PLN02397 aspartate transaminase
Probab=99.55 E-value=6.1e-13 Score=135.70 Aligned_cols=257 Identities=13% Similarity=0.126 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhhc-cCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHH--HHHHHHHHHHHHH
Q 013675 145 FSLINEACSMFAH-TNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTES--ILLAVKSSRDYMR 219 (438)
Q Consensus 145 ~~~~~~~~~~~~~-~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a--~~~al~a~~~~~~ 219 (438)
.+.+.+++..... ....+|....|..++.+.+.+++.+..+.+ ++. +....+.+|+.+ +..++.+..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~----i~~~~i~~g~Ga~~l~~~~~~~~---- 139 (423)
T PLN02397 68 LNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENR----VATVQCLSGTGSLRLGAEFLARF---- 139 (423)
T ss_pred chHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCe----eEeeecccchHHHHHHHHHHHHh----
Confidence 3455555433322 222357777888888887777765442211 111 211223444444 333334332
Q ss_pred HhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-CC-CCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC---
Q 013675 220 NKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-DK-EFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP--- 291 (438)
Q Consensus 220 ~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~~-~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd--- 291 (438)
.+| |+|++++++|+.+...++..|++++.+|+ ++ ++.+|++.+++.+. +++++++.++|+||||.+.+
T Consensus 140 -~pG---d~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~ 215 (423)
T PLN02397 140 -YPG---STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQ 215 (423)
T ss_pred -CCC---CEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH
Confidence 267 99999999999999999999999999998 33 57899998888875 56889999999999999976
Q ss_pred HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC-ccCCCC-ccEEEeCCCCCCC-CCCCcEEEE--Eecccccc
Q 013675 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF-DFSVQG-VTSISVDVHKYGL-APKGTSVVL--YRNREIRK 366 (438)
Q Consensus 292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~-~~~~~g-vdsis~s~hK~~~-~p~g~g~l~--~r~~~~~~ 366 (438)
+++|+++|++||+++++|.+|..+... ....+.++. .+...+ -.++..|+.|... .+..+|+++ ..+++...
T Consensus 216 l~~i~~~a~~~~~~vI~De~Y~~l~~~---~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~ 292 (423)
T PLN02397 216 WEQISDLIKSKNHLPFFDSAYQGFASG---DLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAV 292 (423)
T ss_pred HHHHHHHHHhCCcEEEEecccCCccCC---chhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHH
Confidence 667888999999999999999876521 000000000 011111 1356668899943 345589975 33333221
Q ss_pred c---ch-hcc-cccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-----H---HHHHHHHHHHHHHHHHHHHhhcC
Q 013675 367 H---QF-VAV-TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-----E---GYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 367 ~---~~-~~~-~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-----~---g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
. .. ... ..|.+ ....++.++...+.. + .+++..++..+..+.+.+.|+++
T Consensus 293 ~~~~~~~~~~~~~~~~--------------~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~ 355 (423)
T PLN02397 293 RVKSQLKLIARPMYSN--------------PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR 355 (423)
T ss_pred HHHHHHHHHHhcccCC--------------CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 000 00100 011133333332321 1 25667778888999999999887
No 272
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.55 E-value=7.3e-13 Score=131.04 Aligned_cols=211 Identities=17% Similarity=0.139 Sum_probs=141.1
Q ss_pred HHHHHHHHhC---CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 176 VIAMTAALLG---NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 176 ~~~~~a~l~g---~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
+++.+++.++ .++++ + ++|+|+++++.+++.++ ++|+++.++|+.+..+++..|++++.
T Consensus 61 Lr~aia~~~~~~~~~~~~----i--~it~Ga~~~i~~~~~~~------------d~v~v~~P~y~~~~~~~~~~g~~~~~ 122 (335)
T PRK14808 61 LIEKILSYLDTDFLSKNN----V--SVGNGADEIIYVMMLMF------------DRSVFFPPTYSCYRIFAKAVGAKFLE 122 (335)
T ss_pred HHHHHHHHhCCCCCCcce----E--EEcCCHHHHHHHHHHHh------------CcEEECCCCHHHHHHHHHHcCCeEEE
Confidence 3444555555 66665 6 89999999999998765 35999999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
+|+++++.+|... + +.++++++++|+||||.+.+.+++.+++ ++++++++|++|..+.- .. . .+...
T Consensus 123 v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~---~~--~-~~~~~- 189 (335)
T PRK14808 123 VPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHG---ES--Y-VDLLK- 189 (335)
T ss_pred ecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcC---Cc--h-HHHHH-
Confidence 9998777666443 2 3578999999999999999999999998 57999999999975421 00 0 11011
Q ss_pred CCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHH
Q 013675 333 SVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE 411 (438)
Q Consensus 333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~ 411 (438)
... -.++..+..|... ++..+|+++..+ ++.+........|.. +.....++.+++. ..+.+.+
T Consensus 190 ~~~-~vi~~~S~SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~~------------~~~~q~a~~~~l~--~~~~~~~ 253 (335)
T PRK14808 190 KYE-NLAVIRTFSKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFNV------------SYVSQMFAKVALD--HREIFEE 253 (335)
T ss_pred hCC-CEEEEEechhhccCcccceEEEEeCH-HHHHHHHHhcCCCCC------------CHHHHHHHHHHHh--CHHHHHH
Confidence 111 2467778899954 445689977654 443322111111110 0111112233332 2244566
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcc
Q 013675 412 NTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 412 ~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..+...+..+++.+.|++. |++
T Consensus 254 ~~~~~~~~r~~l~~~L~~~-g~~ 275 (335)
T PRK14808 254 RTKFIVEERERMKSALREM-GYR 275 (335)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCE
Confidence 6677777778888888876 443
No 273
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.55 E-value=7.7e-13 Score=133.98 Aligned_cols=217 Identities=18% Similarity=0.147 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC-cHHHHHhhcCc---
Q 013675 174 AEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-AYDKAAQYFNI--- 248 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~-s~~~a~~~~Gi--- 248 (438)
.++.++++++++.+. +. + ++++||++|+..+++.++. .| +.+++..+.+|. ....+....|.
T Consensus 88 ~~la~~l~~~~~~~~~~~----v--~~~~sgsea~~~al~~~~~-----~g--~~~ii~~~~~yhg~~~~~~~~~~~~~~ 154 (398)
T PRK03244 88 IALAERLVELLGAPEGGR----V--FFCNSGAEANEAAFKLARL-----TG--RTKIVAAEGGFHGRTMGALALTGQPAK 154 (398)
T ss_pred HHHHHHHHHhCCCCCCCE----E--EEeCchHHHHHHHHHHHHH-----HC--CCeEEEECCCcCCccHHHHhccCCccc
Confidence 467778888888542 33 5 8999999999999999875 22 245666554544 43333333332
Q ss_pred ---------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675 249 ---------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 249 ---------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
++..+|. .|++++++.+++++++|+++.+++++|.+.| +++|.++|++||+++++|++++|+
T Consensus 155 ~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 229 (398)
T PRK03244 155 RAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGI 229 (398)
T ss_pred ccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 2233332 3899999999888999999999999999987 889999999999999999999875
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
.. .|... .+.......|++++ .|.+.++..+|+++.+++ +... +. .... ..+..++. ...+
T Consensus 230 gr-----~g~~~-~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~~-~~~~-~~--~~~~-----~~t~~~~~--~~~a 290 (398)
T PRK03244 230 GR-----TGAWF-AHQHDGVTPDVVTL--AKGLGGGLPIGACLAFGP-AADL-LT--PGLH-----GSTFGGNP--VACA 290 (398)
T ss_pred cc-----cchHH-hhhhhCCCCCEEEE--chhhhCCcccEEEEEcHH-HHhh-cc--CCCC-----cCCCCCCH--HHHH
Confidence 42 11000 01111112477666 599666667898888754 3221 00 0000 01111111 1233
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+..++|+.+.. .+..++..++.+++.+.|+++
T Consensus 291 aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~ 322 (398)
T PRK03244 291 AALAVLDTIAS---EGLLENAERLGEQLRAGIEAL 322 (398)
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc
Confidence 44444444433 245677778888899999874
No 274
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.55 E-value=6.5e-13 Score=132.59 Aligned_cols=229 Identities=16% Similarity=0.111 Sum_probs=146.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCC---CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNK---EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~---~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
|....+..++.+++.+++.+.+|.+ +++ + ++|+|+++++..++.++.- ++| ++|+++.++|+.+
T Consensus 52 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~----I--~it~G~~~~i~~~~~~l~~----~~g---d~Vl~~~p~y~~~ 118 (357)
T TIGR03539 52 YPQTWGTPELREAIVDWLERRRGVPGLDPTA----V--LPVIGTKELVAWLPTLLGL----GPG---DTVVIPELAYPTY 118 (357)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCcCe----E--EEccChHHHHHHHHHHHcC----CCC---CEEEECCCCcHHH
Confidence 4445666788888888888876654 444 6 8999999999987776521 367 8999999999999
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchh
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
...++.+|++++.++ |+++++ .+++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.
T Consensus 119 ~~~~~~~g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 119 EVGALLAGATPVAAD-------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred HHHHHhcCCEEeccC-------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 999999999988774 233322 257899999999999999876 6679999999999999999997543
Q ss_pred hhhhhhcCCCCCCCccCC----CCccEEEeCCCCCC-CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC
Q 013675 317 LPFAKKLGYPIPPFDFSV----QGVTSISVDVHKYG-LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG 391 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~----~gvdsis~s~hK~~-~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~ 391 (438)
.. +.....++... ..-.++..|..|.. .+...+|+++. ++++........ ...+. + +.
T Consensus 189 ~~-----~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~-~~~~~---------~-~~ 251 (357)
T TIGR03539 189 WE-----GRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVR-KHAGL---------M-VP 251 (357)
T ss_pred cC-----CCCccceecccCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHH-hhccc---------C-CC
Confidence 20 00010111111 01136777899983 34445788764 344433211111 00000 0 01
Q ss_pred chHHHHHHHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 392 GLIAGAWAALMSLG-QEGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 392 ~~ia~~~aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..++.++...+. ....++..++..+.++++.+.|++. |+.
T Consensus 252 --~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~ 292 (357)
T TIGR03539 252 --APVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFR 292 (357)
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 112233333332 2445566666777788888888774 443
No 275
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.54 E-value=1.9e-12 Score=131.29 Aligned_cols=174 Identities=13% Similarity=0.117 Sum_probs=120.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA 242 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a 242 (438)
|...++..++.+.+.+++.+. +.++++ + ++|+|+++++...+ ++. .+| ++|+++.++|..+...
T Consensus 71 Y~p~~g~~~lr~aia~~~~~~-~~~~d~----I--~it~Ga~~al~~l~-~l~-----~~g---d~Vlv~~P~y~~~~~~ 134 (402)
T TIGR03542 71 YGPEQGYPFLREAIAENDYRG-RIDPEE----I--FISDGAKCDVFRLQ-SLF-----GSD---NTVAVQDPVYPAYVDS 134 (402)
T ss_pred CCCCCCCHHHHHHHHHHHHhc-CCCHHH----E--EECCCcHHHHHHHH-Hhc-----CCC---CEEEEeCCCCcchHHH
Confidence 333455555665555443221 566665 7 89999999998743 332 266 8999999999999999
Q ss_pred HhhcCc-----------EEEEeeCCC--CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeE
Q 013675 243 AQYFNI-----------KLWRVPVDK--EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCL 306 (438)
Q Consensus 243 ~~~~Gi-----------~v~~v~~~~--~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~l 306 (438)
++..|+ +++.+|+++ ++..|+.+ .+++++|++++|+||||.+.+ +++|.++|+++|+++
T Consensus 135 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 209 (402)
T TIGR03542 135 NVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLI 209 (402)
T ss_pred HHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEE
Confidence 999999 999999874 34444322 156899999999999999987 788999999999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCC-ccCC-CCccEEEeCCCCCC-CCCCCcEEEEEecc
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPF-DFSV-QGVTSISVDVHKYG-LAPKGTSVVLYRNR 362 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~-~~~~-~gvdsis~s~hK~~-~~p~g~g~l~~r~~ 362 (438)
++|++|..+.. +. .. .+++ .... ....++..|+.|.+ ..+..+|+++...+
T Consensus 210 I~De~y~~~~~---~~-~~-~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~ 263 (402)
T TIGR03542 210 LFDAAYSAFIS---DP-SL-PHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE 263 (402)
T ss_pred EEEchhhhhcc---CC-CC-CcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHH
Confidence 99999986542 10 00 0011 1111 12245567889984 34556899877543
No 276
>PRK08354 putative aminotransferase; Provisional
Probab=99.54 E-value=1e-12 Score=128.66 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=114.5
Q ss_pred HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+++++++.+|. + + ++|+|+++++.+++..+. +| ++|+++.++|+.+..+++..|++++.++
T Consensus 45 l~~~ia~~~~~---~----I--~vt~G~~~al~~~~~~~~------~g---d~vlv~~P~y~~~~~~~~~~g~~~~~~~- 105 (311)
T PRK08354 45 LEEEFSKLFGE---P----I--VITAGITEALYLIGILAL------RD---RKVIIPRHTYGEYERVARFFAARIIKGP- 105 (311)
T ss_pred HHHHHHHHHCC---C----E--EECCCHHHHHHHHHHhhC------CC---CeEEEeCCCcHHHHHHHHHcCCEEeecC-
Confidence 45678888873 3 6 899999999987764332 56 8999999999999999999999997764
Q ss_pred CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc
Q 013675 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF 332 (438)
Q Consensus 256 ~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~ 332 (438)
+|++.++++++ +++++++++|+||||.+.+ +++|.++|+++|+++++|++|+.|... +. . .+
T Consensus 106 -----~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~-----~~-~--~~- 170 (311)
T PRK08354 106 -----NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKK-----PE-S--PE- 170 (311)
T ss_pred -----CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccc-----cc-c--cC-
Confidence 47899998887 5678999999999999977 567777888999999999999876531 10 1 11
Q ss_pred CCCCccEEEeCCCCCCC-CCCCcEEEEE
Q 013675 333 SVQGVTSISVDVHKYGL-APKGTSVVLY 359 (438)
Q Consensus 333 ~~~gvdsis~s~hK~~~-~p~g~g~l~~ 359 (438)
..-.++..++.|.+. .+..+|+++.
T Consensus 171 --~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 171 --GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred --CCcEEEEeccHhhcCCccceeeeeee
Confidence 123467778899953 4456898776
No 277
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.54 E-value=5e-13 Score=136.16 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=127.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCC--CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCc
Q 013675 162 HLDIFQSVARFEAEVIAMTAALLGN--KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSA 238 (438)
Q Consensus 162 ~~~~~~~~~~~e~~~~~~~a~l~g~--~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s 238 (438)
.|....+..++.+.+.+++.+..|. ++++ | ++|+|+++++.+++.++.......+| +.|++ ..++|+.
T Consensus 69 ~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~----I--~it~Ga~~al~~~~~~l~~~~~~~~g---d~v~i~~~P~y~~ 139 (416)
T PRK09440 69 NYDGPQGKDELIEALAALLNERYGWNISPQN----I--ALTNGSQSAFFYLFNLFAGRRADGSL---KKILFPLAPEYIG 139 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCChhh----E--EEccChHHHHHHHHHHHhccccCCCC---CeEEEecCCCchh
Confidence 3444556667888888888877675 4444 6 89999999999999887631111135 78999 6999999
Q ss_pred HHHHHhhcCc----EEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEE
Q 013675 239 YDKAAQYFNI----KLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHV 308 (438)
Q Consensus 239 ~~~a~~~~Gi----~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhV 308 (438)
+..++...|. .+..++++. ++.+|+++|+ ++++++++++++|+||||.+.+ +++|.++|++|++++++
T Consensus 140 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 217 (416)
T PRK09440 140 YADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI 217 (416)
T ss_pred hHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 8886654442 233344433 3679999998 4667899999999999999987 67888899999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR 365 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~ 365 (438)
|.+|+.+.-. ..+ . .......+-.++..|+.|.+.....+|+++.. +++.
T Consensus 218 De~Y~~~~~~----~~~-~-~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~-~~l~ 267 (416)
T PRK09440 218 DNAYGPPFPG----IIF-S-EATPLWNPNIILCMSLSKLGLPGVRCGIVIAD-EEII 267 (416)
T ss_pred eCCccccCCC----cch-h-hcCccccCCeEEEecccccCCCcceEEEEeCC-HHHH
Confidence 9999632110 000 0 00000112246677899987677789987654 4443
No 278
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.53 E-value=1.1e-12 Score=129.40 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=136.9
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
++++.+++.+|.+ + + ++|+|+++++.+++.. .+| ++|+++.++|+.+..+++.+|++++.+|
T Consensus 53 ~Lr~~ia~~~~~~--~----I--~it~Gs~~al~~~~~~-------~~g---d~v~v~~P~y~~~~~~~~~~g~~~~~v~ 114 (330)
T PRK05664 53 GLEAAARAYYGAP--Q----L--LPVAGSQAAIQALPRL-------RAP---GRVGVLSPCYAEHAHAWRRAGHQVRELD 114 (330)
T ss_pred HHHHHHHHHhCCC--C----E--EECcCHHHHHHHHHHc-------cCC---CEEEEcCCChHHHHHHHHHcCCeEEEec
Confidence 5566788888753 3 6 8999999999887532 267 8999999999999999999999999998
Q ss_pred CCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCH---HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI---QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 255 ~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
++ +++++++ +++++++++||||||.+.+. ++|+++|+++|+++++|.+|..+.- . ..+..++
T Consensus 115 ~~--------~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~-----~s~~~~~ 179 (330)
T PRK05664 115 EA--------EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP-Q-----HSLAACA 179 (330)
T ss_pred hh--------hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-c-----ccccccc
Confidence 64 4555553 67789999999999999874 5666667899999999999865431 0 0010111
Q ss_pred cCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHH
Q 013675 332 FSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGY 409 (438)
Q Consensus 332 ~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~ 409 (438)
.. .-.++..++.|... .+..+|+++.. +++.+........|.. + ....+++...+. ....
T Consensus 180 -~~-~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~~~~~----------~-----~~~~~~~~~~L~~~~~~ 241 (330)
T PRK05664 180 -HR-PGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLGPWTV----------S-----GPTRWLAQAALADTPWQ 241 (330)
T ss_pred -cC-CCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcCCCCC----------C-----HHHHHHHHHHHhChHHH
Confidence 11 11367778899953 55679998764 4443322111111111 0 112233333332 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 013675 410 LENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 410 ~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++..++..+..+++.+.|++.
T Consensus 242 ~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 242 RRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 556677777888899988876
No 279
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.52 E-value=1.3e-12 Score=134.38 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=146.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY 239 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~ 239 (438)
...+....+..++.+.+.+++....|..... ++| ++|+|+++|+.++++.+.+ +| |.|++.+++|+..
T Consensus 125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~--~~I--iiT~G~q~al~l~~~~l~~-----pG---d~v~vE~PtY~~~ 192 (459)
T COG1167 125 ALQYGPTAGLPELREAIAAYLLARRGISCEP--EQI--VITSGAQQALDLLLRLLLD-----PG---DTVLVEDPTYPGA 192 (459)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHhcCCccCc--CeE--EEeCCHHHHHHHHHHHhCC-----CC---CEEEEcCCCcHHH
Confidence 3455666788888888888888666665332 137 9999999999999998874 78 9999999999999
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcE-EEEEecCCCCCccccCHH---HHHHHHHHcCCeEEEeccccc
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTV-LIVGSAPGFPHGIIDPIQ---ELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~-~vv~~~~~~~tG~iddi~---~I~~la~~~~i~lhVD~a~gg 314 (438)
..+.+.+|++++.||+|+ ..+|+++|++.+.. +++ +.+....+||||...+.+ +|.++|++||++++.|..|+-
T Consensus 193 ~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~e 271 (459)
T COG1167 193 LQALEALGARVIPVPVDE-DGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE 271 (459)
T ss_pred HHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchh
Confidence 999999999999999995 45999999999976 455 556667789999999864 899999999999999999986
Q ss_pred hhhhhhhhcCCCCCC-CccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 315 FVLPFAKKLGYPIPP-FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~-~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+.. -+.+.|+ ......+-.++..++.|.++....+|+++...+
T Consensus 272 l~~-----~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~ 315 (459)
T COG1167 272 LRY-----DGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE 315 (459)
T ss_pred hhc-----CCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence 543 1111222 222333557889999999877789999877643
No 280
>PRK07505 hypothetical protein; Provisional
Probab=99.50 E-value=1.7e-12 Score=131.69 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH--Hhhc
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA--AQYF 246 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a--~~~~ 246 (438)
..+...++.+.+++++|. .. +++++|++|+..+++.++.... .+| +...|+.....|.++... ....
T Consensus 89 ~~~~~~~l~~~la~~~~~--~~-------~~~~sG~~a~~~ai~~~~~~~~-~~~-~~~vi~~~~~~H~s~~~~~~~~~~ 157 (402)
T PRK07505 89 RSQILKDLEEALSELFGA--SV-------LTFTSCSAAHLGILPLLASGHL-TGG-VPPHMVFDKNAHASLNILKGICAD 157 (402)
T ss_pred hhHHHHHHHHHHHHHhCC--CE-------EEECChHHHHHHHHHHHHhccc-CCC-CCCEEEEchhhhHhHHhhhhhhhc
Confidence 355667888899999987 32 5566778899999887653111 112 112344555778886432 2223
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh-hhhhhhcCC
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV-LPFAKKLGY 325 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~-~pf~~~~g~ 325 (438)
+.+++.+|.+ |++++++++++++++++++.|++|+|.+.|+++|.++|+++|+++++|++++... -++.. +.
T Consensus 158 ~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~--~~ 230 (402)
T PRK07505 158 ETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGE--GY 230 (402)
T ss_pred CCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCC--ch
Confidence 5678888763 8999999998888899999999999999999999999999999999999984211 11000 00
Q ss_pred CCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc
Q 013675 326 PIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG 405 (438)
Q Consensus 326 ~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g 405 (438)
..+.+........+++.+..|. +++.| |+++..++++..........| +..++.+....++..+++..+.
T Consensus 231 ~~~~~~~~~~d~~i~~~s~sK~-~~~~G-g~~~~~~~~~~~~~~~~~~~~--------t~~~~~~~~a~aa~~a~l~~~~ 300 (402)
T PRK07505 231 VRSELDYRLNERTIIAASLGKA-FGASG-GVIMLGDAEQIELILRYAGPL--------AFSQSLNVAALGAILASAEIHL 300 (402)
T ss_pred HHHHcCCCCCCCeEEEEechhh-hhccC-eEEEeCCHHHHHHHHHhCCCc--------eeCCCCCHHHHHHHHHHHHHHh
Confidence 0001111122345666788898 44444 666655554433221111111 1122222233445556665555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013675 406 QEGYLENTKAIMEVSESIQK 425 (438)
Q Consensus 406 ~~g~~~~~~~~~~~a~~l~~ 425 (438)
++.+.+..++..++.+.+.+
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~ 320 (402)
T PRK07505 301 SEELDQLQQKLQNNIALFDS 320 (402)
T ss_pred ccCcHHHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 281
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.50 E-value=2.4e-12 Score=127.50 Aligned_cols=210 Identities=15% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 174 AEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
.++++.+++.+|.+. ++ | ++|+|+++++.+... +. .+| + |+++.++|+.+..+++..|++++.
T Consensus 56 ~~L~~~ia~~~~~~~~~~----I--~i~~Gs~e~i~~l~~-~~-----~~g---~-v~v~~P~y~~y~~~~~~~g~~~~~ 119 (339)
T PRK06959 56 DGLAACAARYYGAPDAAH----V--LPVAGSQAAIRALPA-LL-----PRG---R-VGIAPLAYSEYAPAFARHGHRVVP 119 (339)
T ss_pred HHHHHHHHHHhCCCCccc----E--EECcCHHHHHHHHHH-hc-----CCC---e-EEEcCCCcHHHHHHHHHCCCEEEe
Confidence 467778999999975 44 6 899999999875443 22 244 4 888999999999999999999999
Q ss_pred eeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHH---HHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 253 VPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGEL---ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 253 v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~l---a~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
+|.++ +. +.+.++++++++||||||.+.+.+++.++ |++++.++++|++|..+... .. +..
T Consensus 120 v~~~~------~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~--~s----~~~ 183 (339)
T PRK06959 120 LDEAA------DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA--AS----LAA 183 (339)
T ss_pred ecccc------hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--cc----chh
Confidence 88753 22 23345689999999999999886666555 56789999999999865421 00 001
Q ss_pred CccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-H
Q 013675 330 FDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-E 407 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~ 407 (438)
+. ...+ -++..++.|... ++..+|+++.. +++.+........|... ..++.++...+.. +
T Consensus 184 ~~-~~~~-vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~vs---------------~~~q~a~~~~L~~~~ 245 (339)
T PRK06959 184 HT-DRPG-LVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALGAWTVS---------------GPARHAVRAAFADAA 245 (339)
T ss_pred cc-CCCC-EEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcCCCCCc---------------HHHHHHHHHHhCcHH
Confidence 11 1123 367778899843 55668997764 44443322222222211 1133333333433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 408 GYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 408 g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
..++..++..+..+++.+.|+++ |++
T Consensus 246 ~~~~~~~~~~~~r~~l~~~L~~~-g~~ 271 (339)
T PRK06959 246 WQAAMRERLAADGARLAALLRAH-GFA 271 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence 34566677788889999999886 444
No 282
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.49 E-value=1.5e-12 Score=128.48 Aligned_cols=237 Identities=12% Similarity=0.012 Sum_probs=165.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE-ecCCCcCc--H
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMI-IPVSAHSA--Y 239 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi-v~~~~h~s--~ 239 (438)
...++.+.++..++.+.+.++++.|.+. + +-+++.|||.+..+++..+.. +| ++++ +..+.+.+ +
T Consensus 41 sHRs~~F~~i~~~~~~~Lr~Ll~~P~~y---~-Vlfl~GggT~~~ea~~~Nll~-----~g---~~~~~~~~tG~fg~r~ 108 (364)
T PRK12462 41 SHRSSWFSSLLAQAEADLRDLLGIPDEY---G-VVFLQGGSSLQFSMIPMNFSR-----PG---AAAPEYVTTGYWSRKA 108 (364)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCCCC---e-EEEEeccHHHHHHHHHHHcCC-----CC---CcEEEEEeCCHHHHHH
Confidence 4567889999999999999999997543 1 335667799999988887753 45 5443 34444444 5
Q ss_pred HHHHhhcCcEEEEeeCCC----CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675 240 DKAAQYFNIKLWRVPVDK----EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~----~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.+.++.+| ++..+...+ +.-++++++ .++++...|.+++-+|.+|+..| ++.+.++.+++||++.+-+
T Consensus 109 ~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~ 180 (364)
T PRK12462 109 IGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFM 180 (364)
T ss_pred HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhh
Confidence 67777777 555554211 234566665 34567789999999999999986 3333468999999996533
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch--hcccccCCCccCCCCccCCCCCch
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF--VAVTEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~--~~~~~~~g~~~~~~~~~gsr~~~~ 393 (438)
.. ++|+... |.+..+.+|.+ +|+|.+++++|++.+.+... ....+|.... ...+...+.+...
T Consensus 181 s~-----------pid~~~~--dvi~agsQKnl-gP~Gltvvivs~~al~~~~~~~p~~ldy~~~~-~~~s~~nTPpv~~ 245 (364)
T PRK12462 181 SR-----------PFDVEAY--GMVYAHAQKNL-GPAGVTVAIIRRALLERVPDTLPPMLDFRTHV-EHRSNYNTPPVFA 245 (364)
T ss_pred CC-----------CCChHHc--cEEEeeccccC-CCCceEEEEECHHHHhhccccCCchhhHHHHH-hcCCCCCCchHHH
Confidence 22 4565554 99999999996 59999999999876533221 1111111000 0112223555566
Q ss_pred HHHHHHHHHHHcHH--HHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 394 IAGAWAALMSLGQE--GYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 394 ia~~~aal~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
+.++-.+++++-++ |++.+.++..+.++.+++.|.+.+++.
T Consensus 246 iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~ 288 (364)
T PRK12462 246 IYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVI 288 (364)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77888889888777 999999999999999999999988664
No 283
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.49 E-value=4.9e-12 Score=127.74 Aligned_cols=172 Identities=21% Similarity=0.139 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
...++.+.++++.+.+ . + ++++||++|+..|+++++.+... +|. .+++|++.+..|......+...+...
T Consensus 74 ~~~~la~~l~~~~~~~--~----v--~~~~sGseA~~~al~~ar~~~~~-~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~ 144 (389)
T PRK01278 74 EQERLAERLVENSFAD--K----V--FFTNSGAEAVECAIKTARRYHYG-KGHPERYRIITFEGAFHGRTLATIAAGGQE 144 (389)
T ss_pred HHHHHHHHHHhhCCCC--E----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCCcHHHHhccCCh
Confidence 3445666777776432 3 5 89999999999999999875332 452 24588888887666554444443221
Q ss_pred EEe----eCCCCCc----cCHHHHHHhhccCcEEEEEecCCCCCccc----cCHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 251 WRV----PVDKEFR----ADVKAIKKYINRNTVLIVGSAPGFPHGII----DPIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 251 ~~v----~~~~~~~----~d~~~Le~~I~~~t~~vv~~~~~~~tG~i----ddi~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
... |..++.. .|++++++++++++++|+++.+++++|.. +.+++|.++|++||+++++|+++.|+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~- 223 (389)
T PRK01278 145 KYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR- 223 (389)
T ss_pred hhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc-
Confidence 111 2112222 58999999999899999999888888843 3589999999999999999999987643
Q ss_pred hhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 319 FAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
.|. .+.....+ .|.+++ .|.+.+....|+++.+++
T Consensus 224 ----~g~---~~~~~~~~~~pdi~t~--sK~l~~G~~ig~~~~~~~ 260 (389)
T PRK01278 224 ----TGK---LFAHEWAGVTPDIMAV--AKGIGGGFPLGACLATEE 260 (389)
T ss_pred ----CCc---ceeecccCCCCCEEEE--ehhccCCcceEEEEEcHH
Confidence 111 01111112 365554 588554455888777654
No 284
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.48 E-value=7.5e-12 Score=126.68 Aligned_cols=223 Identities=21% Similarity=0.166 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCC-CcCcHHHHHhhcCc-
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVS-AHSAYDKAAQYFNI- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~-~h~s~~~a~~~~Gi- 248 (438)
..++.+.++++.+.+ . + .++++||+|+..|++.+|.+....+|. .+++|+.... .|.....+....+-
T Consensus 84 ~~~l~~~l~~~~~~~--~----~--~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~ 155 (396)
T PRK04073 84 LGPWYEKVAKLTGKD--M----V--LPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEE 155 (396)
T ss_pred HHHHHHHHHhcCCCC--e----E--EEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCc
Confidence 344556677776643 2 4 899999999999999998763322232 2456776654 46555444443331
Q ss_pred -----------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEecccc
Q 013675 249 -----------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 249 -----------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~g 313 (438)
.+..+|.+ |++++++++++++++|+++.+++|+|.+.| +++|.++|++||+++++|++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~ 230 (396)
T PRK04073 156 EYKRGFGPMLPGIKKIPYG-----DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT 230 (396)
T ss_pred ccccCCCCCCCCceEeCCC-----CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence 12233322 789999999989999999999999999866 8999999999999999999998
Q ss_pred chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 314 GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 314 g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
++... |... .++......|++++ .|.+.++ ..+|+++.++ ++.+.. . .... ..+..+. + .
T Consensus 231 g~g~~-----g~~~-~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~-~i~~~~-~--~~~~-----~~t~~~~-~-~ 291 (396)
T PRK04073 231 GLGRT-----GKLF-ACDWDNVTPDMYIL--GKALGGGVFPISCVAANR-DILGVF-T--PGSH-----GSTFGGN-P-L 291 (396)
T ss_pred CCCcC-----cHHH-HhhhcCCCCCEEEe--cccccCCCCcceEEEEcH-HHHhhh-c--CCCC-----CCCCCCC-H-H
Confidence 76431 1000 01112223577776 4874443 4578877654 332211 0 0000 0111111 1 1
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..++.-++|+.+.++ +..++..++.+++.+.|+++
T Consensus 292 ~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l 326 (396)
T PRK04073 292 ACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEI 326 (396)
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhh
Confidence 122333445443232 34466677788888888775
No 285
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.46 E-value=8.2e-12 Score=125.51 Aligned_cols=229 Identities=17% Similarity=0.120 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKL 250 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v 250 (438)
+...++.+.+++++|.+ . + ++++||++|+..++++++..... .|..+++|+++.+.+..+...+...+...
T Consensus 69 ~~~~~l~~~la~~~g~~--~----~--~~~~sg~~a~~~a~~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~~~~ 139 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD--R----V--FFCNSGAEANEAALKLARKYTGD-KGKEKKKIIAFENSFHGRTMGALSATGQP 139 (379)
T ss_pred HHHHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHhhc-cCCCCCeEEEECCCcCCccHHHHHhcCCh
Confidence 34566777889998875 3 4 89999999999999987643221 11113789988877655544444443322
Q ss_pred E----EeeCCCCCcc----CHHHHHHhhccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 251 W----RVPVDKEFRA----DVKAIKKYINRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 251 ~----~v~~~~~~~~----d~~~Le~~I~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
. ..++..+... |++++++.+++++++|+++.+++++|... ++++|.++|+++|+++++|++|+++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~ 219 (379)
T TIGR00707 140 KYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRT 219 (379)
T ss_pred hhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 1 1233222222 89999999998999999988877777642 3899999999999999999999765321
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
|... .+.......|+++ .+|.+.++.++|+++.++ ++....... ..+ ... + -+....+++.
T Consensus 220 -----g~~~-~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~-~~~~~~~~~---~~~-----~~~-~-~~~~~~~aa~ 280 (379)
T TIGR00707 220 -----GKFF-AYEHYGIEPDIIT--LAKGLGGGVPIGATLAKE-EVAEAFTPG---DHG-----STF-G-GNPLACAAAL 280 (379)
T ss_pred -----chhh-hHHhcCCCCCEEE--EcccccCCcccEEEEEcH-HHHhhhcCC---CCC-----CCC-C-CCHHHHHHHH
Confidence 1000 1111111235554 469966556789877653 333221100 000 011 1 1122344566
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++|+.+.. .+..++..++++++++.|+++
T Consensus 281 aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~ 309 (379)
T TIGR00707 281 AVLEVIEK---ERLLENVKEKGDYFKERLEEL 309 (379)
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence 66665532 234556666777777776553
No 286
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.44 E-value=2.3e-11 Score=123.32 Aligned_cols=175 Identities=19% Similarity=0.109 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
...++.+.++++++.+ . + .++++||+|+..|++.++.+...++|. .+.+|+..+.+ |..........+-
T Consensus 74 ~~~~~~~~l~~~~~~~--~----~--~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~ 145 (400)
T PTZ00125 74 VLGLAEKYITDLFGYD--K----V--LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTD 145 (400)
T ss_pred HHHHHHHHHHhCCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCC
Confidence 4456666777777764 2 4 899999999999999998654333443 23556665554 5555554443332
Q ss_pred EEE---EeeCCCC----CccCHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchh
Q 013675 249 KLW---RVPVDKE----FRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 249 ~v~---~v~~~~~----~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
... ..+..++ ...|+++++++++ +++++|++..+++++|.+.| +++|.++|++||+++++|++++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g 225 (400)
T PTZ00125 146 PKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225 (400)
T ss_pred cchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 110 0011110 1138999999996 67999999999999999887 9999999999999999999987653
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK-GTSVVLYRNR 362 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~-g~g~l~~r~~ 362 (438)
.. |... ..+......|.++++ |.+.++. ++|+++.+++
T Consensus 226 ~~-----G~~~-~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~ 264 (400)
T PTZ00125 226 RT-----GKLL-AHDHEGVKPDIVLLG--KALSGGLYPISAVLANDD 264 (400)
T ss_pred cc-----chhh-HHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHH
Confidence 21 1000 011111124777765 9866554 6888887654
No 287
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=8.8e-12 Score=120.08 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=160.2
Q ss_pred chhHHHHHHHHHHHHHHHhCC----CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH
Q 013675 166 FQSVARFEAEVIAMTAALLGN----KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK 241 (438)
Q Consensus 166 ~~~~~~~e~~~~~~~a~l~g~----~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~ 241 (438)
+.|...+.+++.+.+.+.-|. ++++ + ++|.|+|.|+.+.+..+.+ +| +..++|.+.|+.|..
T Consensus 120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~----~--Vv~~G~T~ane~l~fcLad-----pg---dafLvPtPyY~gfdr 185 (471)
T KOG0256|consen 120 YHGLPSFRQAVAEFMERARGNRVKFDPER----V--VVTNGATSANETLMFCLAD-----PG---DAFLVPTPYYPGFDR 185 (471)
T ss_pred ccCchHHHHHHHHHHHHHhCCCCccCccc----e--EEecccchhhHHHHHHhcC-----CC---ceeeecCCCCCcccc
Confidence 344555666666666666554 4554 6 8999999999998888775 88 899999999999998
Q ss_pred HHhhc-CcEEEEeeCCC--CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675 242 AAQYF-NIKLWRVPVDK--EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (438)
Q Consensus 242 a~~~~-Gi~v~~v~~~~--~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD 309 (438)
-+++. |++++.|.+.. ++++++++||.+.++ +.+.|++++|+||.|++.+ +..+.+.|.+++|.+++|
T Consensus 186 dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 186 DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee
Confidence 88877 88999998875 789999999999864 5789999999999999977 556667778999999999
Q ss_pred ccccchhhhhhhhcCCCCC------CCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCC
Q 013675 310 LCLGGFVLPFAKKLGYPIP------PFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVS 382 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p------~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~ 382 (438)
+.|++.+.- +.++ .+ ..+. ...-.-+..+..|-++-| ...|+++..++.+....-.... .+.. +
T Consensus 266 EIya~sVF~---~~~F-~Sv~ev~~~~~~-~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmss--f~~v--S 336 (471)
T KOG0256|consen 266 EIYAGSVFD---KSEF-RSVLEVRKDPHL-DPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--FGLV--S 336 (471)
T ss_pred hhhcccccC---ccCc-eEHHHHhhcccc-CCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhh--ccCC--c
Confidence 999887652 1122 10 0111 222245667788883322 3478887777765433211100 0000 0
Q ss_pred CCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 383 PTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 383 ~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
. . ...+++...+=..+-++-+++..+++...-+++.++|+++
T Consensus 337 s-----~-tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l 378 (471)
T KOG0256|consen 337 S-----Q-TQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL 378 (471)
T ss_pred H-----H-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 0 0 0001111111133344556778888888899999999876
No 288
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.43 E-value=4.4e-12 Score=128.93 Aligned_cols=233 Identities=14% Similarity=0.164 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~ 252 (438)
..+..+..|+.||.+..- .+++|.|.||...+.+.. ++| |.|+++...|-|.....-+.|+..++
T Consensus 72 i~eAqe~aA~~fgAd~ty-------FvvNGTS~ank~vi~a~~-----~~G---D~VLvdRN~HKSi~~glilaGa~Pvy 136 (557)
T COG1982 72 IKEAQELAARVFGADHTY-------FVVNGTSTANKAVINAVL-----TPG---DKVLVDRNCHKSIHHGLILAGATPVY 136 (557)
T ss_pred HHHHHHHHHHHhCCCceE-------EEECCccHHHHHHHHhhc-----CCC---CEEEecCCccHHHHHHHHHcCCceEE
Confidence 345556799999999873 789999999999999987 388 99999999999999998899999888
Q ss_pred eeCCC------CCccCHHHHHHhhccC--c-EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhc
Q 013675 253 VPVDK------EFRADVKAIKKYINRN--T-VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323 (438)
Q Consensus 253 v~~~~------~~~~d~~~Le~~I~~~--t-~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~ 323 (438)
+.... -+.++.+.+++++.++ . +++++++||+ .|++.++++|.+.++++++|+.+|.+++...- |..
T Consensus 137 l~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~-~~~-- 212 (557)
T COG1982 137 LEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFD-FSP-- 212 (557)
T ss_pred ecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCccccc-ccc--
Confidence 87643 2569999999987643 4 7899999988 99999999999999999999999999864322 110
Q ss_pred CCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc-cccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHH
Q 013675 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR-EIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALM 402 (438)
Q Consensus 324 g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~-~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~ 402 (438)
..|. .....+.|+++-|.||.+.+-..+|.+.+++. ......+... .......|.+..++|++-.|-+
T Consensus 213 --~l~~-~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea--------~~~h~STSPsY~l~ASlD~Ar~ 281 (557)
T COG1982 213 --MLPE-SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEA--------LMMHQSTSPSYPLMASLDVARM 281 (557)
T ss_pred --cCcc-hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHH--------HHHHccCCchHHHHHHHHHHHH
Confidence 1222 22336789999999999888888898888873 2211111100 0011123444556677766555
Q ss_pred HHcHHH---HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 403 SLGQEG---YLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 403 ~~g~~g---~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
+.+..| .++..+...+.++.+++...+++++++
T Consensus 282 ~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~ 317 (557)
T COG1982 282 QEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPV 317 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence 555555 344578888888888888888875543
No 289
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.43 E-value=2.4e-11 Score=122.95 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc-Cc
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF-NI 248 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~-Gi 248 (438)
.+...++.++++++.|.+ . + ++|+||++|+..|+++++..... .+..+++|++....+..+...+... +.
T Consensus 80 ~~~~~~la~~l~~~~~~~--~----v--~~~~gg~eA~~~al~~a~~~~~~-~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 150 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD--K----V--FFCNSGAEANEAAIKLARKYGHK-KGIEKPEIITAENSFHGRTLATLSATGQ 150 (396)
T ss_pred CHHHHHHHHHHHhhcCCC--E----E--EECCCcHHHHHHHHHHHHHHhcc-cCCCCCeEEEECCCcCcccHHHHHhcCC
Confidence 455667778888887653 3 5 89999999999999998864322 2333467887776654443333222 22
Q ss_pred EEE---EeeCCCCC----ccCHHHHHHhhccCcEEEEEecCCCCCcc-cc---CHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 249 KLW---RVPVDKEF----RADVKAIKKYINRNTVLIVGSAPGFPHGI-ID---PIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 249 ~v~---~v~~~~~~----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-id---di~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
... ..+..++. ..|++++++++++++++|+++.+++++|. .. .+++|.++|++||+++++|++|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~ 230 (396)
T PRK02627 151 PKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGR 230 (396)
T ss_pred ccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCc
Confidence 211 11222111 12899999999889999999999999994 43 389999999999999999999987643
Q ss_pred hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 318 PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
. |... .++......|.+++ .|...++..+|+++.+++
T Consensus 231 ~-----g~~~-~~~~~~~~pdi~t~--sK~~~~G~rig~~~~~~~ 267 (396)
T PRK02627 231 T-----GKLF-AYQHYGIEPDIMTL--AKGLGGGVPIGAVLAKEK 267 (396)
T ss_pred c-----Ccee-eehhcCCCCCEEEE--cchhhCCcccEEEEEcHH
Confidence 1 1100 11111112366654 488555556888877643
No 290
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.42 E-value=2.6e-11 Score=115.17 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccee--EcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE---ecCCCcCcHHHHH
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGN--MTSGGTESILLAVKSSRDYMRNKRGITRPEMI---IPVSAHSAYDKAA 243 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~--~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi---v~~~~h~s~~~a~ 243 (438)
+.++|.-+++...+.||++++. ||+ -..+||-||+.+-.++.. ++ ++|. .|...|-+.--.-
T Consensus 84 ID~iE~LCq~RALeaF~ldp~k-----WGVNVQp~SGSPANfavYtall~-----Ph---~RiMGLDLP~GGHLsHGy~T 150 (477)
T KOG2467|consen 84 IDQIELLCQKRALEAFGLDPEK-----WGVNVQPYSGSPANFAVYTALLK-----PH---ERIMGLDLPSGGHLSHGYQT 150 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCHHH-----CceeeccCCCCchhhHHHhhhcC-----CC---CeeeeccCCCCCcccccccc
Confidence 5567888888999999999987 555 458899999988888763 55 5554 4566665521111
Q ss_pred hhcCcE-----EE--EeeCCC-CCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccc
Q 013675 244 QYFNIK-----LW--RVPVDK-EFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 244 ~~~Gi~-----v~--~v~~~~-~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg 314 (438)
..-.+. .. ...+|+ +|-+|.+.||+.-. =+|+++++ +.+..-..-|..++.+||.+.|..+.+|-++-+
T Consensus 151 ~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iia--G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHIS 228 (477)
T KOG2467|consen 151 PTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIA--GTSAYSRLIDYARFRKIADKVGAYLMADMAHIS 228 (477)
T ss_pred CCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEe--ccccchhhccHHHHHHHHHhcCceeehhhhhHH
Confidence 111111 11 122454 89999999998644 47887763 445566778899999999999999999999866
Q ss_pred hhhhhhhhcCCCCC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc--cccccc-hhcccccCC--CccCCCCccCC
Q 013675 315 FVLPFAKKLGYPIP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR--EIRKHQ-FVAVTEWSG--GLYVSPTVAGS 388 (438)
Q Consensus 315 ~~~pf~~~~g~~~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~--~~~~~~-~~~~~~~~g--~~~~~~~~~gs 388 (438)
+++ ++|. +| ||+ .+|+++..+||.+-+|.| |++++|.. .....+ -....++.. +...-|.++|.
T Consensus 229 gLV----AA~v-ipsPFe----y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGG 298 (477)
T KOG2467|consen 229 GLV----AAGV-IPSPFE----YCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGG 298 (477)
T ss_pred HHH----hccc-CCCccc----ccceeeccccccccCCcc-eeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCC
Confidence 655 2333 22 444 379999999999999987 77888852 111110 000001100 01123456676
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLP 435 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 435 (438)
.....|+++..||+.-....|.+..++..++++.|.++|.+. |.++
T Consensus 299 PHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~l 344 (477)
T KOG2467|consen 299 PHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKL 344 (477)
T ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceE
Confidence 666778999999999888999999999999999999999876 5543
No 291
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.41 E-value=3e-11 Score=122.28 Aligned_cols=221 Identities=18% Similarity=0.104 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc---
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI--- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi--- 248 (438)
..++.+.++++++.+ . + .++++|++|+..|++.+|.+...+.|..+++|+..+. .|.+..-+...-+.
T Consensus 79 ~~~la~~L~~~~~~~--~----~--~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~ 150 (397)
T TIGR03246 79 VLRLAKKLVDATFAD--K----V--FFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKY 150 (397)
T ss_pred HHHHHHHHHhhCCCC--E----E--EEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 445666778777543 2 4 8999999999999999987643322323456666554 46655444443332
Q ss_pred ---------EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccch
Q 013675 249 ---------KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 249 ---------~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.+..+|. -|++++++++++++++|++...+++.|.+. .+++|.++|++||+++++|+++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~ 225 (397)
T TIGR03246 151 SQGFAPLPGGIKHAPY-----NDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGV 225 (397)
T ss_pred ccCCCCCCCceEEeCC-----CCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence 2233332 289999999988899999998777777653 3899999999999999999998766
Q ss_pred hhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCch
Q 013675 316 VLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGL 393 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ 393 (438)
.. .|. -+.....| .|++++ .|.+.+...+|+++.+++ +.+.. . .... ..+..|.. ..
T Consensus 226 Gr-----~G~---~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~~-i~~~~-~--~~~~-----~~t~~~~p--~~ 284 (397)
T TIGR03246 226 GR-----TGE---LYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTTE-IAAHL-K--VGTH-----GTTYGGNP--LA 284 (397)
T ss_pred Cc-----ccc---chhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcHH-HHHhc-c--CCCc-----CCCCCCCH--HH
Confidence 32 111 01111122 477755 577544456788777643 32111 0 0000 11111111 11
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 394 IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 394 ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.+++.+++..+.. .+..++..++.+++.+.|+++
T Consensus 285 ~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l 318 (397)
T TIGR03246 285 CAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKI 318 (397)
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence 3345555654422 456777888888888888764
No 292
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.40 E-value=3.3e-11 Score=119.52 Aligned_cols=226 Identities=20% Similarity=0.147 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
.+...+-.++.+.+|+++|.+.. ++.++|-.||..++.++.. ++ |.|+..+..|.|+...++..
T Consensus 80 ~G~~~~h~~LE~~lA~f~g~e~a--------l~f~SGy~AN~~~i~~l~~-----~~---dli~~D~lnHASiidG~rls 143 (388)
T COG0156 80 SGTSDLHVELEEELADFLGAEAA--------LLFSSGFVANLGLLSALLK-----KG---DLIFSDELNHASIIDGIRLS 143 (388)
T ss_pred cCCcHHHHHHHHHHHHHhCCCcE--------EEEcccchhHHHHHHHhcC-----CC---cEEEEechhhhhHHHHHHhC
Confidence 34445555666679999999853 6667788899998888873 55 88888899999999999999
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhcc------CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
+.+++..+-+ |+++||+.+.+ +.++|+....-+..|.+-|+++|.+++++|+.++.||.+++-+++
T Consensus 144 ~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~--- 215 (388)
T COG0156 144 RAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL--- 215 (388)
T ss_pred CCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc---
Confidence 9999988764 89999999976 357888888889999999999999999999999999999976654
Q ss_pred hhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH
Q 013675 321 KKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA 399 (438)
Q Consensus 321 ~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a 399 (438)
-..|.. ...+......+|++..+..|.+ |..| | .+..+..+..........+.- ..+-|....+++..
T Consensus 216 G~~GrG~~e~~g~~~~~vdi~~gTlsKAl-Gs~G-g-~v~g~~~~~d~L~~~ar~~if--------StalpP~~aaa~~~ 284 (388)
T COG0156 216 GPNGRGLAEHFGLEPEEVDIIVGTLGKAL-GSSG-G-YIAGSAALIDYLRNRARPFIF--------STALPPAVAAAALA 284 (388)
T ss_pred CCCCccHHHHhCCCCccceEEEEEchhhh-cccC-c-eeeCcHHHHHHHHHhCCceec--------cCCCCHHHHHHHHH
Confidence 111211 1112122234689999999994 5433 3 445555544433221111110 01223333456667
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 400 ALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 400 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+++.+ +...+..++..++++++++.++.
T Consensus 285 al~~l--~~~~~~r~~L~~~~~~~~~~~~~ 312 (388)
T COG0156 285 ALRIL--EEGPERRERLQELAAFFRSLLKA 312 (388)
T ss_pred HHHHH--HhCHHHHHHHHHHHHHHHHHHHh
Confidence 77665 34467777788888888866554
No 293
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=99.39 E-value=4.5e-12 Score=123.56 Aligned_cols=233 Identities=16% Similarity=0.132 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChH-HHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGT-ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt-~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G 247 (438)
+.++...+..-+.+..|++... ..++++-+| +++.+.+.++|. +..+ +.|+.+...|.+-.+++...|
T Consensus 54 ~~~ltn~l~~d~~~~~G~~~~~-----~~~~vP~atgm~l~l~l~~l~~---r~~a---~~Viw~ridqkSc~kai~~AG 122 (389)
T PF05889_consen 54 LAKLTNSLVLDALRLAGLRSVK-----SCFVVPMATGMSLTLCLLALRM---RPKA---KYVIWPRIDQKSCFKAIERAG 122 (389)
T ss_dssp HHHHHHHHHHHHHHHTTHTTHC-----EEEEESS-HHHHHHHHHHHHHH---HCT-----EEEEEEEETHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCcccc-----ceEEEecccccHHHHHHHHHhc---ccCC---ceEEEeeccccchHHHHHhcC
Confidence 4566666777777888987543 125666555 677777777772 1234 789999999999999999999
Q ss_pred cEEEEeeCC--C-CCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 248 IKLWRVPVD--K-EFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 248 i~v~~v~~~--~-~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
++++.||.. + ....|.+++|+.|++ +..+.++++.+...|...| +++|+++|++|||+.++.+|||--.--.+
T Consensus 123 l~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~ 202 (389)
T PF05889_consen 123 LEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCM 202 (389)
T ss_dssp -EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHH
T ss_pred CeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHH
Confidence 999999863 2 345788999998864 5688889999888888866 99999999999999999999974111111
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa 400 (438)
.... -..+.-.+|.+.-++-|.+..|-|.+.+...++..... ....|+|. -+.....-....
T Consensus 203 ~~i~-----~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~---vs~~YpGR----------as~sp~ld~~it 264 (389)
T PF05889_consen 203 HLIQ-----QAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILA---VSKEYPGR----------ASASPSLDLFIT 264 (389)
T ss_dssp HHHH-----HHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHH---HHHTSHSH----------BTSHHHHHHHHH
T ss_pred HHHH-----HHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHH---HHHHhhhh----------hhcccchHHHHH
Confidence 1100 01122236888888889999999988877766544321 22234433 333445577888
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+..+|..||........++-.++.++|++.
T Consensus 265 Ll~LG~~g~~~ll~~r~~~f~~l~erl~~~ 294 (389)
T PF05889_consen 265 LLSLGCTGYGALLKERKASFPYLKERLKKW 294 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 294
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.39 E-value=7e-11 Score=119.35 Aligned_cols=227 Identities=19% Similarity=0.126 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHHHHhhcCc
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFNI 248 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~a~~~~Gi 248 (438)
.+.+.++.+.+++..+.+ . + .++++|+||+..|++.++.+..+ .+..+.+|+... ..|.+...++..-|.
T Consensus 77 ~~~~~~la~~l~~~~~~~--~----v--~f~~SGseA~e~Aik~ar~~~~~-~~~~r~~ii~~~~~yHG~t~~~~~~s~~ 147 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD--K----V--FFANSGAEANEGAIKLARKWGRK-HKNGAYEIITFDHSFHGRTLATMSASGK 147 (395)
T ss_pred CHHHHHHHHHHhhccCCC--E----E--EEeCCcHHHHHHHHHHHHHHhhc-cCCCCcEEEEECCCcCCChHHHHhhcCC
Confidence 345666677777654432 2 4 89999999999999999875331 111234566555 557776666655543
Q ss_pred EE---EEeeCCCCC----ccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhh
Q 013675 249 KL---WRVPVDKEF----RADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 249 ~v---~~v~~~~~~----~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
.. ...|..++. ..|++++++++.+++++|++...+...|.+.| +++|.++|++||+++++|++++|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GR 227 (395)
T PRK03715 148 PGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGR 227 (395)
T ss_pred cccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 21 111211111 24789999999888999999999888888877 99999999999999999999987532
Q ss_pred hhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 318 PFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
.|. -+..... ..|+++++ |.+.++...|.++.+++ +.. + .... ...+..|. + ...+
T Consensus 228 -----tG~---~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~-i~~--~--~~~~-----~~~T~~g~-p-l~~a 285 (395)
T PRK03715 228 -----TGT---LFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAE-VAV--F--EAGD-----QGGTYNGN-P-LMTA 285 (395)
T ss_pred -----Ccc---hhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccc-ccc--c--cCCC-----cCCCCCCC-H-HHHH
Confidence 221 1111112 24887774 77555556777777654 321 1 0111 11122221 1 1234
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+..++++.+.+ .+..++..++.++|++.|+++
T Consensus 286 aala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l 317 (395)
T PRK03715 286 VGVAVISQLLA---PGFLEGVRARGEYLKEKLLEL 317 (395)
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 55566665532 356777788888888888753
No 295
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.34 E-value=1.3e-10 Score=118.04 Aligned_cols=251 Identities=15% Similarity=0.117 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHH----
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMR---- 219 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~---- 219 (438)
+.+...+++..+-.. ........+...+..++.+.+++++|.+.. ++.++|..||..++.++.....
T Consensus 121 v~~a~~~ai~~yG~g-~~gSrl~~G~~~~h~~LE~~LA~f~g~e~a--------ll~sSGy~AN~~~i~aL~~~~~~~~~ 191 (476)
T PLN02955 121 ISNAAANAAKEYGMG-PKGSALICGYTTYHRLLESSLADLKKKEDC--------LVCPTGFAANMAAMVAIGSVASLLAA 191 (476)
T ss_pred HHHHHHHHHHHcCCC-CCCcCccccChHHHHHHHHHHHHHHCCCcE--------EEECChHHHHHHHHHHHhhccccccc
Confidence 344445555554322 222334445555666777789999998753 7889999999999988631100
Q ss_pred -HhcCC-CCCeEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCcccc
Q 013675 220 -NKRGI-TRPEMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIID 290 (438)
Q Consensus 220 -~~~G~-~~~~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~id 290 (438)
..+.. +.+.|+.....|.|+...++.. +.++..++.+ |+++|+++++. +.++|+....-++.|.+.
T Consensus 192 ~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia 266 (476)
T PLN02955 192 SGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA 266 (476)
T ss_pred cccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC
Confidence 00001 1257888888999999999887 5777777755 89999988853 456888888888999999
Q ss_pred CHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC-CCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675 291 PIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP-IPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369 (438)
Q Consensus 291 di~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~-~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~ 369 (438)
|+++|.++|++||+.++||.+++.+.+- ..|.. ...+.. ...+|+++.+..|.+ |-.| |+++.++ +..+...
T Consensus 267 pL~eL~~L~~~~ga~LiVDEAH~~Gv~G---~~G~G~~e~~g~-~~di~ii~~TLsKA~-G~~G-Gfi~gs~-~~~~~l~ 339 (476)
T PLN02955 267 PMEELSQLRKKYGFLLVIDDAHGTFVCG---ENGGGVAEEFNC-EADVDLCVGTLSKAA-GCHG-GFIACSK-KWKQLIQ 339 (476)
T ss_pred CHHHHHHHHHHcCcEEEEcccccCceec---CCCCcHHHHhCC-CCCCcEEEEeCccch-hccC-ceeecHH-HHHHHHH
Confidence 9999999999999999999999876651 11111 111222 245799999999994 4433 6666554 3333221
Q ss_pred hcccccCCCccCCCCccC-CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHH
Q 013675 370 VAVTEWSGGLYVSPTVAG-SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKG 426 (438)
Q Consensus 370 ~~~~~~~g~~~~~~~~~g-sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~ 426 (438)
... . ..+.+ .-+-...+++.++++.+-.+ .++.++..++.+++++.
T Consensus 340 ~~~-----~----~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~ 386 (476)
T PLN02955 340 SRG-----R----SFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL 386 (476)
T ss_pred HhC-----C----CCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh
Confidence 111 1 11111 11222344555666544222 24567777888888874
No 296
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=99.33 E-value=3.9e-11 Score=121.03 Aligned_cols=316 Identities=14% Similarity=0.147 Sum_probs=202.0
Q ss_pred hhHHHHHHHHhhhhhccccccc--cCCCCCCCCCCCCc-HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHHHHH
Q 013675 74 NKYIEAEKQKVVDKMQSGVKSK--REGWWTELPRAGLG-VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINE 150 (438)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~g~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (438)
+++++.-.-+.++++.++..++ +..+.+.+ +++.. .|++++++++..++.-|.++..=+.|....+ ..++.+
T Consensus 65 ~~ml~tlG~~dl~~l~~~~VP~~Ir~~~~l~~-~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP----~~I~RN 139 (1001)
T KOG2040|consen 65 QQMLDTLGYKDLDELIEKTVPKSIRLKRPLKM-DKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVP----AVILRN 139 (1001)
T ss_pred HHHHHhcChhhHHHHHHhhcchhhcccchhcC-CCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCc----HHHHHH
Confidence 3455544555555555444333 34455555 45677 9999999999777777876654444555555 445555
Q ss_pred HHHH---hhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 013675 151 ACSM---FAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227 (438)
Q Consensus 151 ~~~~---~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~ 227 (438)
.++. +...+|++++.+++-.+-.-..+.+++++.|.|..+ . .+..-||.|-...+++.+.. ++ .
T Consensus 140 ilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aN----A--SLLDEgTAaaEAm~l~~~~~----kr---k 206 (1001)
T KOG2040|consen 140 ILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMAN----A--SLLDEGTAAAEAMALCNRIN----KR---K 206 (1001)
T ss_pred hhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccc----h--hhhccchhHHHHHHHHHhhc----cc---c
Confidence 5543 456678999999998877778899999999999876 3 66777888877777776643 22 4
Q ss_pred eEEecCCCcCcHHHHHhhc----CcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC
Q 013675 228 EMIIPVSAHSAYDKAAQYF----NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303 (438)
Q Consensus 228 ~Viv~~~~h~s~~~a~~~~----Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~ 303 (438)
+.++....|+-...+++.. |++++..+. ++.. ...++...+++..|.+ .|.+.|..++.+.+++.|
T Consensus 207 k~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~--------~~~~-~s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~ 276 (1001)
T KOG2040|consen 207 KFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDI--------KEAD-YSSKDVSGVLVQYPDT-EGSVLDFDELVELAHANG 276 (1001)
T ss_pred eEEecCCCCcchhhhhhccccccceeEEecCH--------HHhh-ccccceeEEEEEcCCC-CCcccCHHHHHHHhhccC
Confidence 6999999999977776654 566544332 2211 1234678888999987 799999999999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCC----CCCCCcEEEEEecccccccc---hhcccccC
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG----LAPKGTSVVLYRNREIRKHQ---FVAVTEWS 376 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~----~~p~g~g~l~~r~~~~~~~~---~~~~~~~~ 376 (438)
..+++-.-..+..+ + -| ....|+|+...|++.+| ||++-.||+.++++-.|... .-...|-.
T Consensus 277 s~vv~atDLLaLti--L------rp---PgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~ 345 (1001)
T KOG2040|consen 277 SLVVMATDLLALTI--L------RP---PGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDAL 345 (1001)
T ss_pred ceEEEeehhhHHHc--c------CC---hhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeeccc
Confidence 88665433322211 1 12 24568999999999984 44444666666643222110 00111111
Q ss_pred CCcc-----CCCCccCCCCC------------chHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 377 GGLY-----VSPTVAGSRPG------------GLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 377 g~~~-----~~~~~~gsr~~------------~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
|... .+....-+|.- +.+++.|+. +.|.+|++++.+++...+..|...|++.
T Consensus 346 gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyai--YHGp~gL~~IArrvh~~T~~l~~~l~~a 414 (1001)
T KOG2040|consen 346 GKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAI--YHGPHGLKEIARRVHNLTLILAEGLKNA 414 (1001)
T ss_pred ccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhh--hcCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1100 00000111211 112333333 4699999999999999999999999864
No 297
>PLN02624 ornithine-delta-aminotransferase
Probab=99.33 E-value=3e-10 Score=117.35 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcCc
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
...++.+.++++++.+ . + .++++|++|+..|++.+|.+...++|.+ +..|+....+ |....-+...-+-
T Consensus 118 ~~~~la~~L~~~~~~~--~----~--~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~ 189 (474)
T PLN02624 118 KFPEFAEYLTSMFGYD--M----V--LPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCD 189 (474)
T ss_pred HHHHHHHHHHhhcCCC--e----E--EEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCC
Confidence 3445666677777654 2 4 8999999999999999987644334432 2345555444 3332222222110
Q ss_pred ------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675 249 ------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD 309 (438)
Q Consensus 249 ------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD 309 (438)
.+..+|. -|++.+++.++ +++++|++..+++++|.+.| +++|.++|++||+++++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~D 264 (474)
T PLN02624 190 NEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD 264 (474)
T ss_pred ccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1223332 27899999886 45889999999999999877 999999999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEec
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRN 361 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~ 361 (438)
+++.|+.. .|... .++......|+++++ |.+.++ ..+|+++.++
T Consensus 265 Ev~tG~Gr-----tG~~~-a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~ 309 (474)
T PLN02624 265 EIQTGLAR-----TGKML-ACDWEEVRPDVVILG--KALGGGVIPVSAVLADK 309 (474)
T ss_pred ccccCcCc-----Ccchh-hHHhcCCCCCEEEec--ccccCCCCcceeeeecH
Confidence 99987532 11100 111122235888875 775444 4578877654
No 298
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.32 E-value=2.1e-10 Score=116.43 Aligned_cols=221 Identities=20% Similarity=0.125 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-CCcCcHHHHHhhcC-----
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFN----- 247 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-~~h~s~~~a~~~~G----- 247 (438)
.++.+.++++.+.+ . + .++++|++|+..|++.+|.+.....+..+..|+..+ ..|.+...+...-|
T Consensus 85 ~~l~~~l~~~~~~~--~----~--~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~ 156 (403)
T PRK05093 85 LRLAKKLIDATFAE--R----V--FFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS 156 (403)
T ss_pred HHHHHHHHhhCCCC--E----E--EEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh
Confidence 45666777776543 2 4 899999999999999998764332233345565554 45666544333211
Q ss_pred -------cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcc-ccC----HHHHHHHHHHcCCeEEEeccccch
Q 013675 248 -------IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI-IDP----IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 248 -------i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~-idd----i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
.+++.+|.+ |++++++.+++++++|+++ |.+++|. +.+ +++|.++|++||+++++|++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 230 (403)
T PRK05093 157 DGFGPKPADITHVPFN-----DLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGM 230 (403)
T ss_pred hcCCCCCCCcEEeCCC-----CHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 123333332 8999999998889999888 4555554 433 899999999999999999999875
Q ss_pred hhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHH
Q 013675 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIA 395 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia 395 (438)
.. .|... .+.......|..++ .|.+.+...+|+++.+++ +.+..... .. ..+..+. ....+
T Consensus 231 g~-----~g~~~-~~~~~~~~pdi~s~--sK~l~~G~rig~vv~~~~-i~~~l~~~---~~-----~~t~~~~--~~~~~ 291 (403)
T PRK05093 231 GR-----TGDLF-AYMHYGVTPDILTS--AKALGGGFPIGAMLTTAE-IASHFKVG---TH-----GSTYGGN--PLACA 291 (403)
T ss_pred CC-----Cccch-hhhhcCCCCCEEEe--cccccCCcceEEEEEcHH-HHhhcCCC---CC-----CCCCCCC--HHHHH
Confidence 32 11100 11111112355554 588654455888887643 32211000 00 0111111 11122
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 396 GAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 396 ~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++.++|+.+-. .+..++..++.+++.+.|+++
T Consensus 292 aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~ 323 (403)
T PRK05093 292 VAEAVFDIINT---PEVLEGVKARRQRFVDGLQKI 323 (403)
T ss_pred HHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence 33444544422 244566777777888877764
No 299
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.32 E-value=1.9e-10 Score=115.56 Aligned_cols=167 Identities=19% Similarity=0.164 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI 248 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi 248 (438)
.+++.++.+++++..+.+ . + +++++|++|+..|++.++.+ .| +++|++.+. .|.+........+.
T Consensus 70 ~~~~~~la~~l~~~~~~~--~----~--~~~~sG~~a~~~A~~~a~~~----~g--~~~vi~~~~~~Hg~~~~~~~~~~~ 135 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD--L----V--FFCNSGAEANEAALKLARKH----TG--KSKIVTFEQSFHGRTFGTMSATGQ 135 (377)
T ss_pred CHHHHHHHHHHHhcCCCC--E----E--EEeCCcHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCCcHHhhhccCC
Confidence 456777777777776542 2 4 89999999999999987743 23 256777655 45554444433332
Q ss_pred EEE---EeeCCCC--C--ccCHHHHHHhhccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhh
Q 013675 249 KLW---RVPVDKE--F--RADVKAIKKYINRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 249 ~v~---~v~~~~~--~--~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
... ..|..++ . .-|++++++.+.+++++|++..+.++.|...+ +++|.++|++||+++++|+++.|+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~ 215 (377)
T PRK02936 136 EKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGR 215 (377)
T ss_pred ccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 110 1111111 0 01789999999988999999999988887643 99999999999999999999977532
Q ss_pred hhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEe
Q 013675 318 PFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYR 360 (438)
Q Consensus 318 pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r 360 (438)
. |. .+.....+ .|.++ ..|.+.+...+|+++.+
T Consensus 216 ~-----g~---~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~ 250 (377)
T PRK02936 216 T-----GT---LFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGK 250 (377)
T ss_pred C-----ch---hhHHHhhCCCCcEEE--EcccccCCCccEEEEEc
Confidence 1 11 01111112 35554 57885543447877665
No 300
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.30 E-value=3.8e-10 Score=114.44 Aligned_cols=224 Identities=19% Similarity=0.165 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC--CCeEEecCCC-cCcHHHHHhhcCc
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT--RPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~--~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
...++.+.+++++|.+ . + .++++|++|+..|++.+|.+...++|+. ++.|+..... |.+...+...-|-
T Consensus 80 ~~~~l~~~l~~~~~~~--~----~--~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~ 151 (401)
T TIGR01885 80 VFGEFAEYVTKLFGYD--K----V--LPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTD 151 (401)
T ss_pred HHHHHHHHHHhhcCCC--E----E--EEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCC
Confidence 3445666788888753 2 4 8999999999999999987643333322 3567766666 4454444443221
Q ss_pred ------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675 249 ------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD 309 (438)
Q Consensus 249 ------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD 309 (438)
.+..+|.+ |+++++++++ +++.+|++..+.+++|.+.| +++|.++|++||+++++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~D 226 (401)
T TIGR01885 152 PDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIAD 226 (401)
T ss_pred cccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 23333332 7899999885 45778888889999999887 999999999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
+++.|+.. .|... .++......|+++++ |.+.++ ..+|+++.+ +++.+.... . ....+..+.
T Consensus 227 Ev~~g~g~-----~G~~~-~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~-~~i~~~~~~-------~-~~~~t~~~~ 289 (401)
T TIGR01885 227 EIQTGLGR-----TGKLL-CVDHENVKPDIVLLG--KALSGGVYPVSAVLAD-DDVMLTIKP-------G-EHGSTYGGN 289 (401)
T ss_pred chhhCCCc-----cchhh-HHhhcCCCCCEEEee--ccccCCCCCcEEEEEc-HHHHhhccC-------C-CCCCCCCCC
Confidence 99876432 11100 011112245777765 875443 346776665 343321100 0 001122221
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
....+++.++|+.+..++ ..++..++++++.+.|+++
T Consensus 290 --p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l 326 (401)
T TIGR01885 290 --PLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKL 326 (401)
T ss_pred --HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhc
Confidence 112335556666554333 4456777789999999876
No 301
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.26 E-value=1.6e-09 Score=108.89 Aligned_cols=222 Identities=24% Similarity=0.251 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc---
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI--- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi--- 248 (438)
..++.+.+.+++..+... .+ .++++||+|+..|++.+|.+.. +..||....+ |-...-+...-|-
T Consensus 101 ~v~~ae~L~~~~p~~~~~---~~--~f~~sGaeA~E~AiKiAr~~Tg------r~~viaf~~afHG~T~galslT~~~~~ 169 (447)
T COG0160 101 YVELAEKLTALAPGSGLK---KV--FFGNSGAEAVEAAIKIARAYTG------RPGVIAFDGAFHGRTLGALSLTGSKPP 169 (447)
T ss_pred HHHHHHHHHHhCCcccCC---eE--EecCCcHHHHHHHHHHHHHHhC------CCcEEEECCcccccchhhHHhccCccc
Confidence 344555677766553222 14 8999999999999999997633 2456665554 5444444433321
Q ss_pred ----------EEEEeeCCCCC------------ccCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHH
Q 013675 249 ----------KLWRVPVDKEF------------RADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 ----------~v~~v~~~~~~------------~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
.+..+|....+ .-..+.+++.+.. +++++++...+...|.+.| ++++.
T Consensus 170 ~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~ 249 (447)
T COG0160 170 YKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALR 249 (447)
T ss_pred cccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHH
Confidence 37777765311 1234446665532 4789999999999998876 88999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
++|++||+++++|+++.|+.. .|. -|.+...|+ |+++++ |-+.+....|.++.|.+ +. +
T Consensus 250 ~~~~~~gillI~DEVQtG~GR-----TG~---~fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~e-i~--------~ 310 (447)
T COG0160 250 KLCREHGILLIADEVQTGFGR-----TGK---MFAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAE-IM--------D 310 (447)
T ss_pred HHHHHcCCEEEEeccccCCCc-----ccc---chhhhhcCCCCCEEEec--ccccCCCceeEEeccHH-hc--------c
Confidence 999999999999999998764 343 355666665 999887 77666777888888754 22 1
Q ss_pred cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
|..+. ..++ .+....++.+++..+..-.-+.+.++..++.++++++|.++
T Consensus 311 ~~~g~-----~~~T-f~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l 360 (447)
T COG0160 311 WPPGG-----HGGT-FGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEEL 360 (447)
T ss_pred cCCcc-----cCCC-CCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 32221 1122 22222234444433322222367778888888888888754
No 302
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.25 E-value=7.6e-10 Score=112.41 Aligned_cols=220 Identities=16% Similarity=0.087 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCcE--
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNIK-- 249 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi~-- 249 (438)
..++.+.++++++.+ . + .++++|+||+..|++.+|.+.....+..+.+|+..... |.....+...-|-.
T Consensus 83 ~~~la~~l~~~~~~~--~----v--~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~ 154 (406)
T PRK12381 83 VLRLAKKLIDATFAD--R----V--FFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKY 154 (406)
T ss_pred HHHHHHHHHhhCCCC--e----E--EEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccc
Confidence 345666777776543 3 5 89999999999999999876432211234667766555 44443333322311
Q ss_pred ----------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-----cCHHHHHHHHHHcCCeEEEeccccc
Q 013675 250 ----------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-----DPIQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 250 ----------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-----ddi~~I~~la~~~~i~lhVD~a~gg 314 (438)
+..+| ..|++++++.+++++++|++. |.+++|-+ +.+++|.++|++||+++++|+++.|
T Consensus 155 ~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG 228 (406)
T PRK12381 155 SQDFAPLPPDIRHAA-----YNDLNSASALIDDQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTG 228 (406)
T ss_pred ccCCCCCCCCeeEeC-----CCCHHHHHHhccCCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhC
Confidence 22222 237899999998888888886 66666643 3489999999999999999999977
Q ss_pred hhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 315 FVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 315 ~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
+.. .|. .+.....+ .|++++ .|.+.+...+|+++.+++ +.+.. . ... ...+..++. .
T Consensus 229 ~gr-----~G~---~~~~~~~~v~pDi~t~--sK~l~gG~~ig~~~~~~~-~~~~~-~------~~~-~~~t~~~~p--l 287 (406)
T PRK12381 229 VGR-----TGE---LYAYMHYGVTPDVLTT--AKALGGGFPIGAMLTTEK-CASVM-T------VGT-HGTTYGGNP--L 287 (406)
T ss_pred CCC-----Ccc---hhhhHhhCCCCCEEEe--hhhhhCCCceEEEEEcHH-HHhhc-C------CCC-CCCCCCCCH--H
Confidence 632 111 11111122 466544 588655556888777643 32211 0 000 011111111 1
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+++.++++.+.. .+..++..++.+++.+.|+++
T Consensus 288 ~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l 322 (406)
T PRK12381 288 ASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTI 322 (406)
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence 13344455555422 246677777888888887664
No 303
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.24 E-value=1.4e-09 Score=111.03 Aligned_cols=220 Identities=20% Similarity=0.177 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... .| +.+|+....+ |....-+...-|-
T Consensus 117 ~~~~~lAe~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~t~~-~g--r~~ii~~~~~yHG~t~~~ls~t~~~ 187 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKLKY----S--FFCNSGTESVEAALKLAKAYQSP-RG--KFTFIAASGAFHGKSLGALSATAKP 187 (442)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHhh-cC--CcEEEEECCCccCCCHHHhhccCCc
Confidence 34456777788876543332 4 89999999999999999976432 23 3567766655 4433333322111
Q ss_pred -----------EEEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEE
Q 013675 249 -----------KLWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLH 307 (438)
Q Consensus 249 -----------~v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lh 307 (438)
.+..+|.+ |.+++++.++ +++.+|++......-|.+.| ++++.++|++||+.++
T Consensus 188 ~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI 262 (442)
T TIGR03372 188 AFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLI 262 (442)
T ss_pred ccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 23344432 6777777774 35788888888877888877 9999999999999999
Q ss_pred EeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 384 (438)
+|+++.|+.. .|. -+.+...| .|++++ .|.+.+. ..+|.++.+++ +.... . .. +.
T Consensus 263 ~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~~~-i~~~~-~------~~----~~ 320 (442)
T TIGR03372 263 LDEVQTGMGR-----TGK---MFACEHEGVQPDILCL--AKALGGGVMPIGATIATEA-VFSVL-F------DN----PF 320 (442)
T ss_pred EeecccCCCc-----ccc---chhhhhcCCCCCeeee--hhhhcCCcccceEEEecHH-HHHhh-h------cc----Cc
Confidence 9999977542 221 12222334 387774 5875544 34677777643 32211 0 00 00
Q ss_pred ccCCCCCch---HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 385 VAGSRPGGL---IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 385 ~~gsr~~~~---ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
..++-.++. .++..++|+.+-++ +..++..++.+++.+.|++
T Consensus 321 ~~~~T~~gnp~~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~ 365 (442)
T TIGR03372 321 LHTTTFGGNPLACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQ 365 (442)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence 111222111 33444555555333 3445666677777777655
No 304
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.24 E-value=1.5e-09 Score=110.88 Aligned_cols=234 Identities=15% Similarity=0.122 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHH-HHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYD-KAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~-~a~~~~G- 247 (438)
+...++.+.+++++....+. + .|+++||||+..|++.+|.+...+ |. .+.+|+.-..+|.... -+....+
T Consensus 85 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseA~e~A~klar~~~~~~-~~~~r~~ii~~~~~yHG~t~~~ls~~~~ 157 (423)
T PRK05964 85 EPAERLAQRLVALTPGGLDH----V--FFSDSGSVAVEVALKMALQYWRNR-GEPGRSRFLSLRGGYHGDTIGTMSVGDR 157 (423)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEcCCcCCccHHHHhcCCC
Confidence 34456777788876422222 5 899999999999999999764332 32 2467777666554432 2222111
Q ss_pred -----------cEEEEeeCCCC--CccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHHHHHHHcCCeE
Q 013675 248 -----------IKLWRVPVDKE--FRADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGELALSHGTCL 306 (438)
Q Consensus 248 -----------i~v~~v~~~~~--~~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~~la~~~~i~l 306 (438)
..+..+|...+ ...+++++++.+. +++.+|++.. .....|...+ +++|.++|++||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ll 237 (423)
T PRK05964 158 GGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLL 237 (423)
T ss_pred ccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 02333443321 1223888888885 3566777766 4666676644 899999999999999
Q ss_pred EEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCCc
Q 013675 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTV 385 (438)
Q Consensus 307 hVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 385 (438)
++|+++.|+.. .|... .++......|+++++ |++.++ ..+|+++.+ +++.+.... ...+ +. ..
T Consensus 238 I~DEv~tg~gr-----~G~~~-a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~-~~i~~~~~~-~~~~-~~-----~~ 301 (423)
T PRK05964 238 IFDEIATGFGR-----TGTLF-ACEQAGVSPDIMCLS--KGLTGGYLPLAATLCT-AEIFEAFYS-DDRA-KA-----FM 301 (423)
T ss_pred EEechhhCCCc-----Ccchh-HHHhcCCCCCeeeee--hhhhcCcccceEEEEc-HHHHHhhhc-CCcc-cc-----cc
Confidence 99999977643 11100 011111124777664 987666 467886665 443322100 0000 00 01
Q ss_pred cCCC-CCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 386 AGSR-PGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 386 ~gsr-~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.++- .+. ..++..++++.+.. .+..++..++.+++++.|+++
T Consensus 302 ~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l 346 (423)
T PRK05964 302 HSPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPF 346 (423)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhh
Confidence 1111 111 13344455554433 245677777788888877665
No 305
>PRK07482 hypothetical protein; Provisional
Probab=99.24 E-value=1.2e-09 Score=112.45 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhh--
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQY-- 245 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~-- 245 (438)
.+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|... .-+...
T Consensus 93 ~~~~~~lAe~L~~~~p~~~~~----v--~f~~sGSEAve~AlKlAr~~~~~-~g~~~r~~Ii~~~~~YHG~t~ga~s~~~ 165 (461)
T PRK07482 93 TEASITLSKRIIDRAPAGMSK----V--YYGLSGSDANETQIKLVWYYNNV-LGRPEKKKIISRWRGYHGSGVVTGSLTG 165 (461)
T ss_pred CHHHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHHHHh-cCCCCCceEEEecCccCCccHhhhhccC
Confidence 345566777788877433333 4 89999999999999999976432 232 246677655544332 211111
Q ss_pred -------cC---cEEEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHH
Q 013675 246 -------FN---IKLWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQE 294 (438)
Q Consensus 246 -------~G---i~v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~ 294 (438)
++ -.+..+|...... -+++++++.+. +++++|++.......|.+.| +++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~ 245 (461)
T PRK07482 166 LSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPA 245 (461)
T ss_pred CchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHH
Confidence 11 1233333321101 14678888884 35788888887777777754 789
Q ss_pred HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR 362 (438)
Q Consensus 295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~ 362 (438)
|.++|++||+.+++|+++.||.. .|. .+.....|+ |+++++ |.+.++. ..|.++.+++
T Consensus 246 lr~lc~~~giLlI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~ 306 (461)
T PRK07482 246 IQAVLKKYDILLIADEVVTGFGR-----LGS---MFGSDHYGIEPDLITVA--KGLTSAYAPLSGSIVGEK 306 (461)
T ss_pred HHHHHHHhCCEEEEeccccCCCc-----Ccc---hhhHHhcCCCCCEEEEc--cccccCccccceeeecHH
Confidence 99999999999999999988753 121 122233344 888874 7755543 5677777654
No 306
>PRK12403 putative aminotransferase; Provisional
Probab=99.22 E-value=2e-09 Score=110.77 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec--CCCcCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP--VSAHSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~--~~~h~s~~~a~~~~Gi 248 (438)
+...++.+.++++++.+.+. + .++++||||+..|++.+|.+... .|.++..+++. ...|.+...+...-|.
T Consensus 98 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AiklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~~~s~s~~ 170 (460)
T PRK12403 98 PAVIELSELLFSLLPGHYSH----A--IYTNSGSEANEVLIRTVRRYWQV-LGKPQKKIMIGRWNGYHGSTLAATALGGM 170 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-hCCCCCcEEEEECCCcCcccHhhhhcCCC
Confidence 44556667788887643232 4 89999999999999999976432 23221234333 3347665555443332
Q ss_pred E-----------EEEeeCCCCC----c--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675 249 K-----------LWRVPVDKEF----R--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE 297 (438)
Q Consensus 249 ~-----------v~~v~~~~~~----~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~ 297 (438)
+ +..+|....+ . .+.+++++.+. +++++|++.......|.+.| +++|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~ 250 (460)
T PRK12403 171 KFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQR 250 (460)
T ss_pred ccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 2 3334321100 0 12356666653 35778888888777788877 999999
Q ss_pred HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEec
Q 013675 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRN 361 (438)
Q Consensus 298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~ 361 (438)
+|++||+++++|++++||.. .|. -+.+...| .|++++ .|.+.++. .+|.++.++
T Consensus 251 lc~~~g~lLI~DEV~tGfGR-----tG~---~~a~e~~gv~PDiv~~--gK~lggG~~Piga~v~~~ 307 (460)
T PRK12403 251 ICRQYDVLLCADEVIGGFGR-----TGE---WFAHEHFGFEPDTLSI--AKGLTSGYVPMGGLVLSK 307 (460)
T ss_pred HHHHcCCEEEEeccccCCCc-----Cch---hhhhhhcCCCCCeEEE--cccccccccceEEEEECH
Confidence 99999999999999988743 121 11122223 388874 58755443 567667664
No 307
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.21 E-value=2.6e-09 Score=110.81 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecC-CCcCcHHHHHhhcC
Q 013675 171 RFEAEVIAMTAALLGN-KEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPV-SAHSAYDKAAQYFN 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~-~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~-~~h~s~~~a~~~~G 247 (438)
+...++.+.+++++.. +.+. + .|+++|+||+..|++.+|.+... .|. .+.+||... ..|.+...+...-|
T Consensus 133 ~~~~~lae~L~~~~~~~~~~~----v--~f~~SGsEA~e~AlKlAr~~~~~-~g~~~r~~iI~~~~~yHG~t~~a~slsg 205 (504)
T PLN02760 133 KPSLDLAKELLEMFTARKMGK----V--FFTNSGSEANDTQVKLVWYYNNA-LGRPNKKKFIARSKSYHGSTLISASLSG 205 (504)
T ss_pred HHHHHHHHHHHhhcCCCCCCE----E--EEeCChHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCccCChHhhhhccC
Confidence 4455566677777532 2222 4 78999999999999999875432 232 245666554 45666554444333
Q ss_pred cE------------EEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHH
Q 013675 248 IK------------LWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQE 294 (438)
Q Consensus 248 i~------------v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~ 294 (438)
.. +..++.+..++ ...+++++.+. +++++|++.......|.+.| +++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~ 285 (504)
T PLN02760 206 LPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEK 285 (504)
T ss_pred ChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHH
Confidence 21 23333221111 12356777773 34778888888777888887 999
Q ss_pred HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhc
Q 013675 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVA 371 (438)
Q Consensus 295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~ 371 (438)
|.++|++||+++++|+++.||.. .|. -+.....| .|+++++ |.+.++. ..|.++.++ ++.... ..
T Consensus 286 lr~lc~~~g~lLI~DEV~TGfGR-----tG~---~~a~e~~gv~PDivtlg--K~lggG~~PigAv~~~~-~i~d~~-~~ 353 (504)
T PLN02760 286 IQAVLKKYDILFIADEVICAFGR-----LGT---MFGCDKYNIKPDLVSLA--KALSSAYMPIGAVLVSP-EISDVI-HS 353 (504)
T ss_pred HHHHHHHcCCEEEecchhhCCcc-----cch---hhHHHhcCCCCcEEEec--ccccCCccccceEeecH-HHHhhh-hc
Confidence 99999999999999999977743 111 12122223 4877764 7754432 456667764 332211 00
Q ss_pred ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.....+......+..| . ....++..++|+.+.+ ++..++..++.++|++.|+++
T Consensus 354 ~~~~~~~~~h~~T~~g-n-Pl~~Aaala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l 407 (504)
T PLN02760 354 QSNKLGSFAHGFTYSG-H-PVSCAVALEALKIYKE---RNIPEHVNKIAPRFQDGIKAF 407 (504)
T ss_pred ccccccCcccCCCCCC-C-HHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 0000000000111111 1 1113344445554433 256778888888888888764
No 308
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.21 E-value=2.2e-09 Score=103.09 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=150.0
Q ss_pred CcchhhHHHHHHHHhhhhhccccccccCCCCCCCCCCCCc--HHHHHHHHHHhCCCCCCCCCceeeeecCCCCcchHHHH
Q 013675 70 VPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELPRAGLG--VGVIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSL 147 (438)
Q Consensus 70 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~g~~--~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (438)
++.....|++|+.+....-+.++...+--.+..+-+++.+ -+++.....- ...-++.+ ..+.
T Consensus 28 i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p---~lLd~~~f-------------p~Da 91 (475)
T KOG0258|consen 28 IVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYP---ELLDSPEF-------------PTDA 91 (475)
T ss_pred hhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcCh---hhcCCCCC-------------CHHH
Confidence 4555566777777764444444442222233445555555 4444443321 11011221 1223
Q ss_pred HH--HHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675 148 IN--EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (438)
Q Consensus 148 ~~--~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~ 225 (438)
+. +.+...+......|..++++.-+.+.+.+.+.+.=|.+.+. .+| .+|+|+|.|+...+..+.. | +
T Consensus 92 i~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p--~dI--~LT~GAS~ai~~il~l~~~------~-~ 160 (475)
T KOG0258|consen 92 IKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADP--EDI--FLTTGASPAIRSILSLLIA------G-K 160 (475)
T ss_pred HHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCH--HHe--eecCCCcHHHHHHHHHHhc------C-C
Confidence 32 22223333344567888998888888888888877753221 136 8999999999998888763 2 2
Q ss_pred CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC--CCccCHHHHHHhhcc-----CcEEEEEecCCCCCcccc---CHHHH
Q 013675 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK--EFRADVKAIKKYINR-----NTVLIVGSAPGFPHGIID---PIQEL 295 (438)
Q Consensus 226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~--~~~~d~~~Le~~I~~-----~t~~vv~~~~~~~tG~id---di~~I 295 (438)
++-|++|-+-|+-+......+|...+..-+|+ +|.+|.++|++.+++ +++++++.+|.||||.+. .+++|
T Consensus 161 ~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i 240 (475)
T KOG0258|consen 161 KTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGI 240 (475)
T ss_pred CCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHH
Confidence 36799999999999999999999877766775 899999999999875 588999999999999884 58899
Q ss_pred HHHHHHcCCeEEEeccccc
Q 013675 296 GELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg 314 (438)
...|+++++.++.|++|--
T Consensus 241 ~~fa~~~~l~llaDEVYQ~ 259 (475)
T KOG0258|consen 241 ICFAAEEGLVLLADEVYQD 259 (475)
T ss_pred HHHHHHcCeEEechHHHHh
Confidence 9999999999999999743
No 309
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.20 E-value=1.5e-10 Score=115.19 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=140.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-------cCCC
Q 013675 163 LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-------PVSA 235 (438)
Q Consensus 163 ~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-------~~~~ 235 (438)
|..+|.+.++|+ .+++++|.+.. ++|..|+.+...+.++... .+| +++.+ +...
T Consensus 70 Y~gdpSv~~Lee----~vael~G~E~a--------lpthqGRgaE~Il~~~~~~----~~g---~e~g~~~~~~~v~hn~ 130 (467)
T TIGR02617 70 YSGSRSYYALAE----SVKNIFGYQYT--------IPTHQGRGAEQIYIPVLIK----KRE---QEKGLDRSKMVAFSNY 130 (467)
T ss_pred cccCchHHHHHH----HHHHHhCCceE--------EECCCCchHHHHHHHhhcc----ccc---ccccccccccccceEE
Confidence 556778887777 57889998742 7898899999999888763 134 44443 3333
Q ss_pred cCcH-HHHHhhcCcEEEEeeCC----------CCCccCHHHHHHhhcc----CcEEEEEecCCCC-Cccc---cCHHHHH
Q 013675 236 HSAY-DKAAQYFNIKLWRVPVD----------KEFRADVKAIKKYINR----NTVLIVGSAPGFP-HGII---DPIQELG 296 (438)
Q Consensus 236 h~s~-~~a~~~~Gi~v~~v~~~----------~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~-tG~i---ddi~~I~ 296 (438)
|+-- ...+...|+.++.++.+ .+|.+|+++|+++|++ +..++..+..+|. -|.+ +.+.+++
T Consensus 131 ~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~ 210 (467)
T TIGR02617 131 FFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVY 210 (467)
T ss_pred EEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHH
Confidence 4442 34566778888776432 2688999999999984 3333333333343 3545 4578999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhh--cCC-CCCCCcc---CCCCccEEEeCCCCCCCCCCCcEEEEEecc---ccccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKK--LGY-PIPPFDF---SVQGVTSISVDVHKYGLAPKGTSVVLYRNR---EIRKH 367 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~--~g~-~~p~~~~---~~~gvdsis~s~hK~~~~p~g~g~l~~r~~---~~~~~ 367 (438)
++|++||+++|.|+|--.=-.-|.+. .++ ..+.-+. -...+|++++|..|-+++|.| |+++.+++ ++.+.
T Consensus 211 ~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~ 289 (467)
T TIGR02617 211 EIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTE 289 (467)
T ss_pred HHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHH
Confidence 99999999999999842100001110 011 0110000 125679999999999999988 67778877 43333
Q ss_pred chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.-.....+.|. ...|...|--+-++...|... --.+.+++.....+||.+.|.+.
T Consensus 290 ~~~~~i~~EGf-----~tYGGlagrd~ea~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~ 344 (467)
T TIGR02617 290 CRTLCVVQEGF-----PTYGGLEGGAMERLAVGLYDG---MNLDWLAYRINQVQYLVNGLEEI 344 (467)
T ss_pred HHhhcccccCC-----cCcCchhHHHHHHHHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhC
Confidence 21111112221 112223332233333333222 12344556666677788887664
No 310
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.20 E-value=7.2e-10 Score=108.32 Aligned_cols=191 Identities=20% Similarity=0.203 Sum_probs=130.6
Q ss_pred HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC-----CCcCcHHHHHhhcCcEEEEe
Q 013675 179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-----SAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~-----~~h~s~~~a~~~~Gi~v~~v 253 (438)
..+.+.+....+ .++++++.+.|+++.+.++.. + .+++++. ..|+++...++..|.++++|
T Consensus 73 ~~~~~~~~~~ae-----a~~ivnnn~aAVll~~~al~~------~---~EvVis~g~lV~gg~~~v~d~~~~aG~~l~Ev 138 (395)
T COG1921 73 LAELLCGLTGAE-----AAAIVNNNAAAVLLTLNALAE------G---KEVVVSRGELVEGGAFRVPDIIRLAGAKLVEV 138 (395)
T ss_pred HHHHHhcccchh-----heeeECCcHHHHHHHHhhhcc------C---CeEEEEccccccCCCCChhHHHHHcCCEEEEe
Confidence 334445554333 348999999999988888763 2 3554432 58999999999999999887
Q ss_pred eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc--cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 254 PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII--DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 254 ~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i--ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
-. ..+....+++.+|+++|+++.-++.++. |.. -+++++.++||++|+++++|.+.|..+-+ ..+ .-.
T Consensus 139 G~--tn~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~---e~~----l~~ 208 (395)
T COG1921 139 GT--TNRTHLKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDK---EPD----LRE 208 (395)
T ss_pred cc--cCcCCHHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCcccccc---ccc----hhH
Confidence 54 4568899999999999998877776653 443 35788999999999999999998754321 000 112
Q ss_pred cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC-CchHHHHHHHHHHHcH
Q 013675 332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP-GGLIAGAWAALMSLGQ 406 (438)
Q Consensus 332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~-~~~ia~~~aal~~~g~ 406 (438)
.-..|+|.+++|++|.+.||. +|+++-| +++...... .+.-.+-|- ...++++.++|+.+-.
T Consensus 209 ~la~GaDLV~~SgdKllgGPq-aGii~Gk-KelI~~lq~-----------~~l~Ralrv~K~tla~l~~aLe~y~~ 271 (395)
T COG1921 209 ALALGADLVSFSGDKLLGGPQ-AGIIVGK-KELIEKLQS-----------HPLKRALRVDKETLAALEAALELYLQ 271 (395)
T ss_pred HHhcCCCEEEEecchhcCCCc-cceEech-HHHHHHHHh-----------hhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence 235689999999999987777 6776555 444322110 011111222 2347899999988854
No 311
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.19 E-value=2.2e-09 Score=110.33 Aligned_cols=221 Identities=18% Similarity=0.183 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH-HHHHhhcCcE
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQYFNIK 249 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~-~~a~~~~Gi~ 249 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +| +.+|+....+|... .-+...-|-.
T Consensus 124 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~t~~-~g--r~~ii~~~~~yHG~t~~~ls~~~~~ 194 (459)
T PRK11522 124 PLRAMLAKTLAALTPGKLKY----S--FFCNSGTESVEAALKLAKAYQSP-RG--KFTFIATSGAFHGKSLGALSATAKS 194 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCchHHHHHHHHHHHHHhcc-CC--CcEEEEecCCCCCCcHHHhhhcCCc
Confidence 34555666777776543333 4 89999999999999999976432 23 34677666554443 3333222211
Q ss_pred ------------EEEeeCCCCCccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEE
Q 013675 250 ------------LWRVPVDKEFRADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLH 307 (438)
Q Consensus 250 ------------v~~v~~~~~~~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lh 307 (438)
+..+|. -|.+++++.++ +++++|++.......|.+.| ++++.++|++||+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI 269 (459)
T PRK11522 195 TFRKPFMPLLPGFRHVPF-----GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLI 269 (459)
T ss_pred ccccCCCCCCCCCcccCC-----CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 122222 26788888885 35678888888888888877 9999999999999999
Q ss_pred EeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccCCCC
Q 013675 308 VDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPT 384 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 384 (438)
+|+++.|+.. .|. -+.+...| .|++++ .|.+.+. ..+|.++.+++ +... +. .+ +.
T Consensus 270 ~DEV~tG~GR-----tG~---~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~~~-i~~~-~~------~~----~~ 327 (459)
T PRK11522 270 LDEVQTGMGR-----TGK---MFACEHENVQPDILCL--AKALGGGVMPIGATIATEE-VFSV-LF------DN----PF 327 (459)
T ss_pred eccceecCCc-----cch---hhhhhccCCCCCEEEe--chhhhCCCccceeEEEcHH-HHHH-hc------cC----Cc
Confidence 9999977532 121 11222233 387765 4775544 34677777643 2211 10 00 00
Q ss_pred ccCCCCCc---hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 385 VAGSRPGG---LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 385 ~~gsr~~~---~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..++-.+. ..++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 328 ~~~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 328 LHTTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHH
Confidence 11111111 134555666665433 45677778888888887654
No 312
>PRK05965 hypothetical protein; Provisional
Probab=99.19 E-value=4.4e-09 Score=108.26 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhc--
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYF-- 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~-- 246 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|... .-+....
T Consensus 90 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGSEAve~AlKlAr~~~~~-~g~~~r~kii~~~~~YHG~t~~a~s~t~~ 162 (459)
T PRK05965 90 EPAIRLAAKLAERAPGSLNH----V--YFTLGGSDAVDSAVRFIRHYWNA-TGRPSKKQFISLERGYHGSSSVGAGLTAL 162 (459)
T ss_pred HHHHHHHHHHHhhCCCCcCE----E--EEeCChhHHHHHHHHHHHHHHHh-cCCCCccEEEEecCCcCcccHHHHHhcCC
Confidence 33446667777776433232 4 89999999999999999986543 342 245677666554333 2222221
Q ss_pred -------Cc---EEEEeeCCCCC----ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 247 -------NI---KLWRVPVDKEF----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 247 -------Gi---~v~~v~~~~~~----~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
|. .+..+|....+ .-| ++++++.+. +++.+|++.......|.+.| +++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr 242 (459)
T PRK05965 163 PAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMR 242 (459)
T ss_pred chhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHH
Confidence 11 12334332111 113 367888785 45788888888777787654 78999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecccccccchhccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~ 373 (438)
++|++||+.+++|+++.||.. .|. .+.+...|+ |+++++ |.+.++. ..|.++.+++-... +....
T Consensus 243 ~lc~~~gillI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~--~~~~~ 310 (459)
T PRK05965 243 EACRELGILFVADEVITGFGR-----TGP---LFACEAEGVVPDLMTVA--KGLTSGYVPMGAVLMSDHVYQG--IADGA 310 (459)
T ss_pred HHHHHcCCEEEEechhccCcc-----Cch---hhhHhhcCCCCCeEEec--hhhccCCcceeEEEEcHHHHHH--Hhccc
Confidence 999999999999999988753 121 122223343 888885 7755553 57877877542211 10000
Q ss_pred ccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
...+.. ...++-.+.. .++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 311 ~~~~~~----~h~~T~~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l 362 (459)
T PRK05965 311 GAAAPV----GHGYTYSAHPVSAAVGLEVLRLYHEG---GLLANGQKAGPRFAAGLDAL 362 (459)
T ss_pred cccccc----cccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Confidence 000000 0111222222 23344455444333 45567777888888888764
No 313
>PRK06541 hypothetical protein; Provisional
Probab=99.19 E-value=4.6e-09 Score=108.08 Aligned_cols=230 Identities=19% Similarity=0.153 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+...++.+.+++++..+.+. + .++++||||+..|++.+|.+... .|. .+.+|+.-..+ |....-+....|.
T Consensus 95 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~a~s~~~~ 167 (460)
T PRK06541 95 PPAIELAERLAALAPGDLNR----V--FFTTGGSEAVESAWKLAKQYFKL-TGKPGKHKVISRAIAYHGTTQGALAITGL 167 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCccEEEEEcCcccCcchhhhcCcCC
Confidence 33445666777776433233 5 89999999999999999976432 221 14567665554 4333333322111
Q ss_pred ------------EEEEeeCCCC-----CccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 249 ------------KLWRVPVDKE-----FRAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 249 ------------~v~~v~~~~~-----~~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
.+..+|.... +.-| ++.+++.++ +++++|++....++.|.+.| +++|
T Consensus 168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l 247 (460)
T PRK06541 168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV 247 (460)
T ss_pred hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 2333443221 1112 367888875 34667777776888899887 9999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~ 372 (438)
.++|++||+.+++|+++.||.. .|. .+.....| .|++++ .|.+.++. ..|.++.+++.......
T Consensus 248 ~~lc~~~g~llI~DEV~tGfGR-----~G~---~~a~~~~gv~PDivt~--gK~l~~G~~pigav~~~~~i~~~~~~--- 314 (460)
T PRK06541 248 REICDRYDVLLVSDEVICAFGR-----LGE---MFGCERFGYVPDIITC--AKGITSGYSPLGAMIASDRLFEPFLD--- 314 (460)
T ss_pred HHHHHHcCCEEEEechhhCCCc-----Cch---hhhhhhcCCCCCEEEe--cccccCCccceeEEEEcHHHHHHhhc---
Confidence 9999999999999999977642 121 11222223 477764 58755443 46777777543221110
Q ss_pred cccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
. . . ....+ +-.+.. .++..++++.+..+ +..++..++.++|.+.|+++
T Consensus 315 -~-~-~----~~~~~~T~~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l 365 (460)
T PRK06541 315 -G-P-T----MFLHGYTFGGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKL 365 (460)
T ss_pred -C-C-C----ccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0 01111 222211 33344445444333 45577778888888888765
No 314
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.17 E-value=4.2e-09 Score=108.12 Aligned_cols=222 Identities=20% Similarity=0.205 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~G- 247 (438)
+...++.+.+++++.... +. + .++++||||+..|++.+|.+ .| +++|+....+|..+. -+...-+
T Consensus 99 ~~~~~la~~l~~~~p~~~~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~al~~~~~ 166 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDHEKR----S--ALFNSGAEAVENAVKIARSY----TG--RQAVVVFDHAYHGRTNLTMALTAK 166 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCCE----E--EEeCCcHHHHHHHHHHHHHh----hC--CCeEEEECCCcCcChHHHHhhcCC
Confidence 445567778888875432 22 4 88999999999999999865 23 357777666544433 3332211
Q ss_pred -------c-----EEEEeeCCCCCc------c--------CHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 248 -------I-----KLWRVPVDKEFR------A--------DVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 248 -------i-----~v~~v~~~~~~~------~--------d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
. .+..+|....++ . ..+.+++.+. +++++|++...+...|.+.| +++|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr 246 (443)
T PRK06058 167 SMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALL 246 (443)
T ss_pred CcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence 1 233333211111 1 1334555554 46778887766665666654 89999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
++|++||+.++.|+++.||... |. .+.....| .|.++++ |.+.++...|+++.+++ +.+.. . ..
T Consensus 247 ~lc~~~gillI~DEV~tGfgRt-----G~---~fa~~~~gv~PDiv~~g--K~l~~G~Pi~av~~~~~-i~~~~-~--~~ 312 (443)
T PRK06058 247 EWCRENGVVFIADEVQTGFART-----GA---WFACEHEGIVPDLITTA--KGIAGGLPLSAVTGRAE-IMDAP-H--PG 312 (443)
T ss_pred HHHHHcCCEEEEeccccCCCcC-----hh---hhHHHhcCCCCCEEEEc--ccccCCCccEEEEEcHH-HHhhc-c--CC
Confidence 9999999999999999887431 11 11112223 3888875 88655566888887654 32211 0 00
Q ss_pred cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
. ..++-.+.. .++..++|+.+.+ .+..++..++.+++.+.|+++
T Consensus 313 ~---------~~~T~~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l 358 (443)
T PRK06058 313 G---------LGGTYGGNPVACAAALAAIETIEE---DDLVARARQIEALMTDRLRAL 358 (443)
T ss_pred C---------CCCCCCCCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHH
Confidence 0 011111211 2334444444432 245667777788888888653
No 315
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.17 E-value=1.9e-09 Score=108.33 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=100.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEE------eeCCCC-CccCHHHHHHh
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWR------VPVDKE-FRADVKAIKKY 269 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~------v~~~~~-~~~d~~~Le~~ 269 (438)
.++++||+|+..|++.+|.. .| +++|++. ...|.+...++...|.+... ++.... -..|++++++.
T Consensus 88 ~~~~SGseA~~~Al~~ar~~----~~--~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~ 161 (375)
T PRK04260 88 FFCNSGAEANEAAIKIARKA----TG--KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKAL 161 (375)
T ss_pred EEcCccHHHHHHHHHHHHHh----cC--CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHh
Confidence 79999999999999999854 22 2566665 55577665555443321110 000000 12489999999
Q ss_pred hccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCC
Q 013675 270 INRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH 345 (438)
Q Consensus 270 I~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~h 345 (438)
+++++++|++..+++++|.+.+ +++|.++|+++|+++++|+++.|+.. .|. ...+.......|++ +..
T Consensus 162 l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~-----~g~-~~~~~~~~~~pdi~--t~s 233 (375)
T PRK04260 162 VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGR-----TGK-LYAFEHYGIEPDIF--TLA 233 (375)
T ss_pred cCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-----ccc-hhhhHhhCCCCCEE--Eec
Confidence 9888999999999999999855 89999999999999999999976532 111 00111111123655 457
Q ss_pred CCCCCCCCcEEEEEecc
Q 013675 346 KYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 346 K~~~~p~g~g~l~~r~~ 362 (438)
|.+.++...|+++.+++
T Consensus 234 K~l~~G~~ig~~~~~~~ 250 (375)
T PRK04260 234 KGLANGVPVGAMLAKSS 250 (375)
T ss_pred ccccCCcceEEEEEcHH
Confidence 97543345788888743
No 316
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.16 E-value=8.9e-10 Score=102.36 Aligned_cols=185 Identities=20% Similarity=0.291 Sum_probs=122.1
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCc
Q 013675 160 PLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSA 238 (438)
Q Consensus 160 ~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s 238 (438)
...|+..++-..+...+..++.+-+|++-.. .++ .+|+|+..+...+.....-+. ..|. ..+|+.| .+.|-.
T Consensus 67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NI--alTnGSQs~fFYlfNlF~G~~--sdG~-~k~illPLaPeYiG 139 (417)
T COG3977 67 LCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNI--ALTNGSQSAFFYLFNLFAGRR--SDGT-EKKILLPLAPEYIG 139 (417)
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--cee--eecCCccchHHHHHHHhcCcc--CCCc-ceeEeeccChhhcc
Confidence 4457778888889999999999999987432 136 888888888777665543211 1232 2356655 444544
Q ss_pred HHHHHhhcCc------EEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEE
Q 013675 239 YDKAAQYFNI------KLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHV 308 (438)
Q Consensus 239 ~~~a~~~~Gi------~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhV 308 (438)
+..++---.+ ++..+|-.. .+++|.++|+ |.+.|.+|+++-|+||||.+- .+.+|.++|++||+++++
T Consensus 140 Y~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliI 217 (417)
T COG3977 140 YADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217 (417)
T ss_pred ccccccCccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEE
Confidence 4433321111 222222111 4568888775 458899999999999999883 477888999999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCC----CCc-cEEEeCCCCCCCCCCCcEEEEEeccccc
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSV----QGV-TSISVDVHKYGLAPKGTSVVLYRNREIR 365 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~----~gv-dsis~s~hK~~~~p~g~g~l~~r~~~~~ 365 (438)
|.||| .|| |.+.|.. ++- -+.++|..|.|.-+..||+++.+ +++.
T Consensus 218 DnAYg---~PF--------P~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIan-e~vi 267 (417)
T COG3977 218 DNAYG---VPF--------PGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIAN-EKVI 267 (417)
T ss_pred ecccC---CCC--------CceecccccccCCCCEEEEeehhhcCCCCcceeEEEcc-HHHH
Confidence 99997 332 2222221 222 46788999998888889986655 4443
No 317
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.15 E-value=7.9e-09 Score=104.84 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC--CCCeEEecCCC-cCcHHHHHhhcCcE
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSA-HSAYDKAAQYFNIK 249 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~--~~~~Viv~~~~-h~s~~~a~~~~Gi~ 249 (438)
..++.+.++++.... +. + .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |....-+....|-.
T Consensus 84 ~~~la~~L~~~~~~~-~~----v--~f~~sGseA~e~AlklAr~~~~~-~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~ 155 (408)
T PRK04612 84 PLKLAEELVTASRFA-EK----V--FLCNSGTEANEAAIKLVRKWASS-QGRPADKRVIVTFRGSFHGRTLAAVTATAQP 155 (408)
T ss_pred HHHHHHHHHhhCCCC-CE----E--EEcCchHHHHHHHHHHHHHHHHh-hCCCCCCcEEEEECCCcCCccHHHHHhcCCc
Confidence 445666777775432 22 5 89999999999999999986532 332 24567766555 44433333322211
Q ss_pred ------------EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cC----HHHHHHHHHHcCCeEEEeccc
Q 013675 250 ------------LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DP----IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 250 ------------v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-dd----i~~I~~la~~~~i~lhVD~a~ 312 (438)
++.+|. -|++++++++.+++.+.++.-|...+|.+ .+ +++|.++|++||+++++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 230 (408)
T PRK04612 156 KYQEGYEPLPGGFRYVDF-----NDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ 230 (408)
T ss_pred ccccCCCCCCCCceEcCC-----CCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 122222 27899999997555555555555556544 32 889999999999999999999
Q ss_pred cchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCC
Q 013675 313 GGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP 390 (438)
Q Consensus 313 gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~ 390 (438)
+|+.. .|. .+.....++ |++++ .|.+.++..+|+++.+++ +.... .. ... ..+..|.
T Consensus 231 tg~gr-----~G~---~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~~~-~~~~~-~~--~~~-----~~t~~~~-- 289 (408)
T PRK04612 231 CGMGR-----TGT---LFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAGPK-VAETM-QF--GAH-----GTTFGGN-- 289 (408)
T ss_pred cCCCc-----CCc---hhhhhhcCCCCCEEEE--cchhcCCCceEEEEECHH-HHhhh-cC--CCc-----CCCCCCC--
Confidence 87543 121 111122233 55555 588555456788777643 22111 00 000 1111121
Q ss_pred CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 391 GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 391 ~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
....++..++|+.+.+ .+..++..++.+++.+.|+++
T Consensus 290 p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l 326 (408)
T PRK04612 290 PLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEAL 326 (408)
T ss_pred HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 1123344455554432 356677777888888877654
No 318
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.15 E-value=3.7e-09 Score=108.32 Aligned_cols=224 Identities=18% Similarity=0.123 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcC--
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFN-- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~G-- 247 (438)
+...++.+.+++++.-..+. + .|+++|+||+..|++.+|.+ .| +++|+.-.. .|.+...+....+
T Consensus 86 ~~~~~la~~L~~~~~~~~~~----v--~f~~SGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~~~~~ 153 (433)
T PRK08117 86 ESILKLAEELAEITPGGLDC----F--FFSNSGAEAIEGALKLAKHV----TK--RPYIISFTGCFHGRTLGALSVTTSK 153 (433)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCcHHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCcCHHHHhhcCCC
Confidence 34556667788887322222 4 89999999999999999865 23 355665544 4555444322211
Q ss_pred -----------cEEEEeeCCCCCc------------cCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 248 -----------IKLWRVPVDKEFR------------ADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 248 -----------i~v~~v~~~~~~~------------~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
-.+..+|....+. -|++++++.++ +++.+|++.......|.+.| +++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l 233 (433)
T PRK08117 154 SKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKL 233 (433)
T ss_pred ccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHH
Confidence 0233444432111 25677777764 35788888888888888888 9999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~ 373 (438)
.++|++||+++++|++++|+.. .|. .+.....| .|++ +..|.+.++..+|+++.+++ +....
T Consensus 234 ~~lc~~~g~llI~DEv~tG~gr-----~G~---~~~~~~~gv~pDi~--t~sK~lg~G~pigav~~~~~-i~~~~----- 297 (433)
T PRK08117 234 REICDRHGILLIFDEVQTGFGR-----TGE---WFAAQTFGVVPDIM--TIAKGIASGLPLSAVVASKE-LMEQW----- 297 (433)
T ss_pred HHHHHHcCCEEEEecchhccCc-----ccc---chhHhhcCCCCCEe--ehhhhccCCCcceeEEEcHH-HHhhc-----
Confidence 9999999999999999987543 121 11111123 3654 45688655455788777643 32211
Q ss_pred ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.... ...+..| +....++..++++.+..+ +..++..++.+++++.|+++
T Consensus 298 --~~~~-~~~T~~~--np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l 346 (433)
T PRK08117 298 --PLGS-HGTTFGG--NPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVL 346 (433)
T ss_pred --cCCC-CCCCCCc--CHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHH
Confidence 0000 0111111 111233444555544332 45566667777777777653
No 319
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.14 E-value=8.4e-09 Score=105.95 Aligned_cols=232 Identities=19% Similarity=0.151 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcHH-HHHhhcCc-
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAYD-KAAQYFNI- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~~-~a~~~~Gi- 248 (438)
...++.+.++++++.+.+. + .|+++||||+..|++.++.+... +|. .+.+|+.-..+|.... -+...-|-
T Consensus 98 ~~~~lAe~L~~~~p~~~~~----v--~f~~sGseAve~AlKlA~~~~~~-rg~~~r~~Ii~~~~~yHG~t~gals~~~~~ 170 (453)
T PRK06943 98 PAIELAERLAALTGGTLGH----A--FFASDGASAVEIALKMSFHAWRN-RGRGDKREFVCLANGYHGETIGALGVTDVA 170 (453)
T ss_pred HHHHHHHHHHHhCCCCCCE----E--EEeCCCHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCcCCCcHHhhcccCCh
Confidence 4456777788877543232 5 89999999999999999876432 232 2456776665544322 22221111
Q ss_pred -----------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHHH
Q 013675 249 -----------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELGE 297 (438)
Q Consensus 249 -----------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~~ 297 (438)
.+..+|..... .-|++++++.++ +++.+|++.. .....|.+.| ++++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~ 250 (453)
T PRK06943 171 LFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA 250 (453)
T ss_pred hhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHH
Confidence 23334432110 013577888885 4678888887 3666777654 899999
Q ss_pred HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccc
Q 013675 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
+|++||+.+++|+++.|+.. .|. .+.+...|+ |+++++ |.+.++ ..+|.++.+++ +... +. ...
T Consensus 251 lc~~~gillI~DEV~TG~GR-----tG~---~fa~~~~gv~PDivt~g--Kgl~gG~~Pi~av~~~~e-i~~~-~~-~~~ 317 (453)
T PRK06943 251 LCDRYGVHLIADEIAVGCGR-----TGT---FFACEQAGVWPDFLCLS--KGISGGYLPLSLVLSRDA-IFAA-FY-DDD 317 (453)
T ss_pred HHHHcCCEEEeechhhCCCC-----Ccc---hhHHHhCCCCCCeEeee--hhhccCcccceEEEEcHH-HHHh-hc-ccC
Confidence 99999999999999988743 121 122223343 888884 765444 25777787754 2211 00 000
Q ss_pred cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+.. ...++-.+.. .++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 318 ~~~~~----~~~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l 368 (453)
T PRK06943 318 VTRGF----LHSHSYTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPL 368 (453)
T ss_pred ccCCc----cCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 00000 0111222222 23344445444333 45566667777777777654
No 320
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.14 E-value=4e-09 Score=104.41 Aligned_cols=175 Identities=22% Similarity=0.188 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc----
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF---- 246 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~---- 246 (438)
...++.+.++++++...+. + .++++||+|+..|++.++.+........+.+|+....+ |....-+...-
T Consensus 60 ~~~~la~~L~~~~p~~~~~----v--~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~ 133 (339)
T PF00202_consen 60 EAAELAEKLAELFPGGLDR----V--FFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP 133 (339)
T ss_dssp HHHHHHHHHHHHSSTTEEE----E--EEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred chhhhhhhhhhccccccce----e--eeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence 3456667788888443332 5 89999999999999999943221111114577776655 43332222221
Q ss_pred --------CcEEEEeeCCCCCc-----cCHHHHHHhh----ccCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCe
Q 013675 247 --------NIKLWRVPVDKEFR-----ADVKAIKKYI----NRNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC 305 (438)
Q Consensus 247 --------Gi~v~~v~~~~~~~-----~d~~~Le~~I----~~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~ 305 (438)
.-.+..+|.+.... -..+++++.+ .++..+|++.......|.+.+ +++|.++|++||++
T Consensus 134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil 213 (339)
T PF00202_consen 134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL 213 (339)
T ss_dssp HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence 11456777653111 1112233322 456788999888877776643 79999999999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+++|+++.|+.. .|. .+.+...| .|+++++ |.+.+....|.++++++
T Consensus 214 lI~DEV~tG~gR-----tG~---~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~ 262 (339)
T PF00202_consen 214 LIADEVQTGFGR-----TGK---FFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEE 262 (339)
T ss_dssp EEEEETTTTTTT-----TSS---SSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHH
T ss_pred eecccccccccc-----cCC---ccceecccccCcccccc--cchhhhhhcccccccch
Confidence 999999988743 121 12222233 3999997 87655578888888864
No 321
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.13 E-value=1e-08 Score=104.60 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 172 FEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
.+.++.+.++++..... .. + .|+++||||+..|++.+|.+ .| +++|+.-..+ |....-+...-|.
T Consensus 84 ~~~~la~~l~~~~p~~~~~~----~--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~~~~~ 151 (421)
T PRK09792 84 SYVTLAEKINALAPVSGQAK----T--AFFTTGAEAVENAVKIARAH----TG--RPGVIAFSGGFHGRTYMTMALTGKV 151 (421)
T ss_pred HHHHHHHHHHHhCCCCCCce----E--EEeCChHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHhhcCCC
Confidence 34566667777764321 22 4 88999999999999999964 33 3567766554 4433222222111
Q ss_pred ------------EEEEeeCCC--CC---ccCHHHHHHhhc-----cCcEEEEEecCCCCCcccc-C---HHHHHHHHHHc
Q 013675 249 ------------KLWRVPVDK--EF---RADVKAIKKYIN-----RNTVLIVGSAPGFPHGIID-P---IQELGELALSH 302 (438)
Q Consensus 249 ------------~v~~v~~~~--~~---~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~id-d---i~~I~~la~~~ 302 (438)
.+..+|... ++ .-|++++++.+. +++++|++....+++|... | +++|.++|++|
T Consensus 152 ~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~ 231 (421)
T PRK09792 152 APYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH 231 (421)
T ss_pred cccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 234444432 11 123578888875 3578899998888999764 5 89999999999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccCC--CCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSV--QGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~--~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
|+++++|++++|+.. .|. .+.... ...|++++ .|.+.+...+|+++.+++
T Consensus 232 g~llI~DEv~tg~gr-----~G~---~~a~~~~~~~pDi~t~--gK~l~~G~pigav~~~~~ 283 (421)
T PRK09792 232 GIVMIADEVQSGFAR-----TGK---LFAMDHYADKPDLMTM--AKSLAGGMPLSGVVGNAN 283 (421)
T ss_pred CCEEEEeccccCCCC-----CCc---hhHHHhcCCCCcEEEe--ehhhcCCCceEEEEEcHH
Confidence 999999999988643 121 111111 12476555 588665567888777543
No 322
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.13 E-value=7.2e-09 Score=97.56 Aligned_cols=226 Identities=19% Similarity=0.186 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCe-EEecCC--CcCcHH-------
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPE-MIIPVS--AHSAYD------- 240 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~-Viv~~~--~h~s~~------- 240 (438)
....+..+.+.++||.+. + +-++.|.||+..|++.+|.|....+++++++ ++++.. .|....
T Consensus 101 d~~~~f~~~vt~lf~~~k------v--lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~ 172 (427)
T KOG1402|consen 101 DVLGEFAEYVTKLFGYDK------V--LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLST 172 (427)
T ss_pred hhHHHHHHHHHHhcCcce------e--eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecC
Confidence 344556678999999985 3 5677789999999999999988888887543 333322 221111
Q ss_pred --HHHhhcC----cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675 241 --KAAQYFN----IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD 309 (438)
Q Consensus 241 --~a~~~~G----i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD 309 (438)
...+-+| ..+..||.+ |.++|+.++++ +.+++++...+-..|++-| +++..++|.+|+++++.|
T Consensus 173 d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~D 247 (427)
T KOG1402|consen 173 DPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIAD 247 (427)
T ss_pred CcchhhccCCCCCCcceeeccC-----CHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEeh
Confidence 1112222 135666665 89999999975 6788888888888998855 899999999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCC-CCCCcEEEEEecccccccchhcccccCCCccCCCCccCC
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-APKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gs 388 (438)
+++.|... .|. .-..+......|++.+. |.+. |-...+.++..++-... ..+...||
T Consensus 248 EvQTGl~R-----TGk-~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~--------------~~pgeHgs 305 (427)
T KOG1402|consen 248 EVQTGLAR-----TGK-LLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLN--------------IKPGEHGS 305 (427)
T ss_pred hhhhcccc-----cCc-EEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhc--------------cCCCcccc
Confidence 99987653 232 11233333345887765 5532 22445555555432221 12333555
Q ss_pred CCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 389 RPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 389 r~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
..|....++..++..+.-.--+++.++...+...|+++|.+++
T Consensus 306 TyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~ 348 (427)
T KOG1402|consen 306 TYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQ 348 (427)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555444555555444433445677888888999999998764
No 323
>PRK06105 aminotransferase; Provisional
Probab=99.12 E-value=1e-08 Score=105.52 Aligned_cols=234 Identities=16% Similarity=0.127 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.++.+... +|. .+.+|+.-..+ |.....+...-|.
T Consensus 92 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseAve~AlKlar~~~~~-~g~t~r~~il~~~~~yHG~t~~a~s~t~~ 164 (460)
T PRK06105 92 GPVIDLAEKLVAMAPVPMSK----V--FFTNSGSEANDTVVKLVWYYNNA-LGRPEKKKIISRQRGYHGVTIASASLTGL 164 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEecCccCCcchhheeccCC
Confidence 34456677788887543333 4 89999999999999999865432 232 24567665444 5444333222121
Q ss_pred ------------EEEEeeCCCCCc-------------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 249 ------------KLWRVPVDKEFR-------------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 249 ------------~v~~v~~~~~~~-------------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
.+..+|.....+ ...+++++.+. +++++|++.......|.+.+ ++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~l 244 (460)
T PRK06105 165 PNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKI 244 (460)
T ss_pred cccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence 223333221111 12467788773 35788888888777788776 8999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~ 372 (438)
.++|++||+++++|+++.|+... |. -+.+...| .|+++++ |.+.+. ...|.++.+++ +... +. .
T Consensus 245 r~lc~~~~~llI~DEv~tG~GRt-----G~---~f~~~~~~v~PDi~~~g--K~lggG~~P~~av~~~~~-i~~~-~~-~ 311 (460)
T PRK06105 245 QAVLRKYDILLVADEVICGFGRT-----GN---MFGCETFGIKPDILVMS--KQLSSSYQPLSAVLMNEK-VYDP-IA-D 311 (460)
T ss_pred HHHHHHcCCeEEEeccccCCCcC-----ch---hhhHHhcCCCCCeeeee--cccccCcccceEEEEcHH-HHHH-Hh-c
Confidence 99999999999999999776431 11 11122223 4877765 775443 24677777643 2211 10 0
Q ss_pred cccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.....+.. ...++-.+.. .++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 312 ~~~~~~~~---~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l 365 (460)
T PRK06105 312 ESGKIGTF---GHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRAL 365 (460)
T ss_pred ccccCccc---ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence 00000000 0111222222 22344455555333 45677778888888888765
No 324
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.12 E-value=5.4e-09 Score=101.85 Aligned_cols=244 Identities=14% Similarity=0.132 Sum_probs=158.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH
Q 013675 161 LHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240 (438)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~ 240 (438)
++|..+.|+.++...+..-....++.+... +-++ ++|+|.|.++..+++.+.+ +| +.|++...++++-.
T Consensus 94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~-~wdi--iit~G~t~~l~~~l~~~~N-----~g---d~vlie~~ty~~AL 162 (472)
T KOG0634|consen 94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYK-NWDI--IITNGNTDGLFKVLRTLIN-----RG---DHVLIEEYTYPSAL 162 (472)
T ss_pred hccccccCcHHHHHHHHHhccccccCCCCC-CceE--EEecCCchHHHHHHHHhhc-----CC---CceEEecccchHHH
Confidence 445667777777776666444455565432 1135 8999999999999999986 77 89999999999999
Q ss_pred HHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc---------Cc-EEEEEecCCCCCccccCH---HHHHHHHHHcCCeEE
Q 013675 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINR---------NT-VLIVGSAPGFPHGIIDPI---QELGELALSHGTCLH 307 (438)
Q Consensus 241 ~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~---------~t-~~vv~~~~~~~tG~iddi---~~I~~la~~~~i~lh 307 (438)
...+.+|++++.|++|++| ++++.|++.+.. ++ .+-.+..++||||...+. ++|.+||++|++.++
T Consensus 163 ~s~~a~gv~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIV 241 (472)
T KOG0634|consen 163 QSMEALGVKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIV 241 (472)
T ss_pred HhccccCceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEE
Confidence 9999999999988887654 899999998853 23 356677889999998876 589999999999999
Q ss_pred EeccccchhhhhhhhcCC------CCCCCc--------------cCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc
Q 013675 308 VDLCLGGFVLPFAKKLGY------PIPPFD--------------FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367 (438)
Q Consensus 308 VD~a~gg~~~pf~~~~g~------~~p~~~--------------~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~ 367 (438)
.|..|.- ++--.+ ..|.++ ....|-.+=.-++.|...-+...|++...+ ..++.
T Consensus 242 eDdpYy~-----Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~-~~l~r 315 (472)
T KOG0634|consen 242 EDDPYYF-----LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNS-LFLKR 315 (472)
T ss_pred ecCccce-----eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCH-HHHHH
Confidence 9999852 221110 011111 111221122224568843335688865543 23222
Q ss_pred chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHH----HHHHHHHHHhhc-CCC
Q 013675 368 QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM----EVSESIQKGLVL-FPM 432 (438)
Q Consensus 368 ~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~----~~a~~l~~~L~~-~~g 432 (438)
.... ...+..| .+|-.-.-+++.++..|++|+.+.+.+++ ..+..+...|.+ +|.
T Consensus 316 il~~---------ae~~t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~ 375 (472)
T KOG0634|consen 316 ILDL---------AEVATSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPK 375 (472)
T ss_pred Hhhh---------cceeecC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2110 0011111 22322335778888899988776666544 445555555554 443
No 325
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.11 E-value=9.3e-09 Score=102.52 Aligned_cols=160 Identities=22% Similarity=0.218 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhc-----
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYF----- 246 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~----- 246 (438)
..++.+.++++.+.+ . + .++++||+|+..|++.++.+ +| +++|+....+|.... -+...-
T Consensus 68 ~~~la~~l~~~~~~~--~----v--~~~~SGseA~e~Alklar~~----~g--r~~Ii~~~~syHG~t~~~ls~~~~~~~ 133 (364)
T PRK04013 68 KEEMLEELSKWVNYE--Y----V--YMGNSGTEAVEAALKFARLY----TG--RKEIIAMTNAFHGRTMGALSATWKPKY 133 (364)
T ss_pred HHHHHHHHHhhcCCC--E----E--EEeCchHHHHHHHHHHHHHH----hC--CCEEEEECCccccCchhhccCCCCccc
Confidence 344555677777653 2 4 89999999999999999865 23 367877766544432 222211
Q ss_pred --Cc-----EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcccc-C---HHHHHHHHHHcCCeEEEeccccch
Q 013675 247 --NI-----KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIID-P---IQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 247 --Gi-----~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~id-d---i~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
+. .+..+|. -|++++++.+.+++++|++.......|.+. | +++|.++|++||++++.|+++.|+
T Consensus 134 ~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~ 208 (364)
T PRK04013 134 REDFEPLVPGFKHIPF-----NDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL 208 (364)
T ss_pred ccCCCCCCCCcEEecC-----CCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence 11 1223332 278899999988999999998877666654 4 899999999999999999998875
Q ss_pred hhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 316 VLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 316 ~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
. .|. .+.....+ .|++++ .|.+.+....|.++.+++
T Consensus 209 -R-----tG~---~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~~ 246 (364)
T PRK04013 209 -R-----TGK---FLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNFD 246 (364)
T ss_pred -C-----CCc---hhHHHhcCCCCCEEEe--cccccCCceeEEEEeccc
Confidence 3 221 12222333 388887 477555456777776643
No 326
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.10 E-value=1.2e-08 Score=104.45 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+ .| +++|+.-..+ |.....+...-|.
T Consensus 84 ~~~~~la~~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~ 151 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDNPK----V--SFGLSGSDANDGAIKFARAY----TK--RRKILSYLRSYYGSTYGAMSLTGLD 151 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEcCCHHHHHHHHHHHHHHh----cC--CCeEEEEeCCcCCcCHHHHHhcCCC
Confidence 34556777788887544333 5 89999999999999999865 23 3566665544 4433333332221
Q ss_pred -----------EEEEeeCCCCCc------------cCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 249 -----------KLWRVPVDKEFR------------ADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 -----------~v~~v~~~~~~~------------~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
.+..+|...... -+++.+++.++ +++++|++....+++|.+.+ +++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~ 231 (443)
T PRK08360 152 FPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLK 231 (443)
T ss_pred cccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHH
Confidence 234444332111 23455666663 46889998887789998765 88999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
++|++||+++++|++++|+.. .|. .+.....+ .|++++ .|.+.++..+|+++.+++ +......
T Consensus 232 ~l~~~~g~llI~DEv~~g~gr-----~G~---~~a~~~~~~~pDiitl--sK~l~~G~pigav~~~~~-i~~~~~~---- 296 (443)
T PRK08360 232 KILDEHGILLVVDEVQSGLGR-----TGK---WFAIEHFGVEPDIITL--GKPLGGGLPISATIGRAE-IMDSLPP---- 296 (443)
T ss_pred HHHHHcCCEEEEeccccCCCc-----Ccc---chhhhhcCCCCCEEEe--cccccCCceeEEEEEcHH-HHhhhcC----
Confidence 999999999999999987643 111 01111112 377765 688554455788777643 3221100
Q ss_pred cCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
.. ...+..+.. ...+++.++++.+..+ +..++..++.+++.+.|++
T Consensus 297 ---~~-~~~T~~~~p--~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~ 342 (443)
T PRK08360 297 ---LA-HAFTLSGNP--VASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEE 342 (443)
T ss_pred ---CC-CCCCCCcCH--HHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHH
Confidence 00 011111111 1134555566555333 3556666777777777654
No 327
>PLN00144 acetylornithine transaminase
Probab=99.10 E-value=1.8e-08 Score=101.51 Aligned_cols=169 Identities=20% Similarity=0.126 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-C-------CCeEEecCCC-cCcHHHH
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-T-------RPEMIIPVSA-HSAYDKA 242 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~-------~~~Viv~~~~-h~s~~~a 242 (438)
...++.+.++++.+.+ . + .++++||||+..|++.+|.+...+ |. . +.+|+.-..+ |....-+
T Consensus 58 ~~~~la~~l~~~~~~~--~----v--~f~~sGseA~e~AlklAr~~~~~~-~~~~~~~~~~~r~~ii~~~~~yHG~t~~~ 128 (382)
T PLN00144 58 PQVELAKRLVASSFAD--R----V--FFCNSGTEANEAAIKFARKYQRVR-APDKKDPAASSATEFVSFSNSFHGRTLGA 128 (382)
T ss_pred HHHHHHHHHHhcCCCC--e----E--EEeCCcHHHHHHHHHHHHHHHhcc-CCCCccccccccceEEEECCCcccccHHH
Confidence 3445666677765432 2 5 899999999999999999764421 21 1 3567665555 4433333
Q ss_pred HhhcCc------------EEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCcccc--C--HHHHHHHHHHcCCe
Q 013675 243 AQYFNI------------KLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIID--P--IQELGELALSHGTC 305 (438)
Q Consensus 243 ~~~~Gi------------~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~id--d--i~~I~~la~~~~i~ 305 (438)
....+- .+..+|. -|++++++.+.. ++++|++...++|.|.+. + +++|.++|++||++
T Consensus 129 ~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~l 203 (382)
T PLN00144 129 LALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGAL 203 (382)
T ss_pred HhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 332221 1223332 278999998864 577888887778855543 3 88999999999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+++|++++|+.. .|. ....+......|++++ .|.+.+...+|+++.+++
T Consensus 204 lI~DEv~tg~gr-----~g~-~~~~~~~~~~PDi~t~--sK~l~~G~pig~v~~~~~ 252 (382)
T PLN00144 204 LVFDEVQCGLGR-----TGY-LWAHEAYGVEPDIMTL--AKPLAGGLPIGAVLVTEK 252 (382)
T ss_pred EEEechhhCCCc-----cch-HhhhhhcCCCCCEEEe--cccccCCcceEEEEEcHH
Confidence 999999987643 111 0011111112365554 588766667888887643
No 328
>PRK07678 aminotransferase; Validated
Probab=99.10 E-value=1.3e-08 Score=104.61 Aligned_cols=230 Identities=20% Similarity=0.206 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
...++.+.++++++.+. . + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+....|.
T Consensus 90 ~~~~lae~l~~~~~~~~-~----v--~f~~sGseA~e~AlklAr~~t~~-~g~~~r~~ii~~~~~yHG~t~~als~~~~~ 161 (451)
T PRK07678 90 PAIKLAEKLNEWLGGEY-V----I--FFSNSGSEANETAFKIARQYHAQ-KGEPHRYKFISRYRAYHGNSMGALAATGQA 161 (451)
T ss_pred HHHHHHHHHHHhCCCCC-E----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCccHHHhhcCCCc
Confidence 34567777888875532 2 4 89999999999999999986533 232 24567766554 4333333322111
Q ss_pred -----------EEEEeeCCCCCcc---------C---HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675 249 -----------KLWRVPVDKEFRA---------D---VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE 297 (438)
Q Consensus 249 -----------~v~~v~~~~~~~~---------d---~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~ 297 (438)
.+..+|.....+. | ++.+++.+. +++++|++.......|.+.| ++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~ 241 (451)
T PRK07678 162 QRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKE 241 (451)
T ss_pred ccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence 2333443221111 1 234666674 46889998887777787765 899999
Q ss_pred HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccc
Q 013675 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
+|++||+.+++|+++.||.. .|. .+.+...| .|++++ .|.+.+. ..+|.++.+++ +... +. ..
T Consensus 242 lc~~~g~llI~DEV~tGfGR-----tG~---~~~~~~~gv~PDivt~--gK~lggG~~Pi~av~~~~~-i~~~-~~--~~ 307 (451)
T PRK07678 242 ICQKHGALLISDEVICGFGR-----TGK---AFGFMNYGVKPDIITM--AKGITSAYLPLSATAVKKE-IYEA-FK--GK 307 (451)
T ss_pred HHHHcCCEEEEeehhhcCCc-----Cch---hHHHHhcCCCCCEEEe--ecccccCCcceeEEEEcHH-HHHH-Hh--cc
Confidence 99999999999999987743 111 11112234 388887 4765444 35788888754 2211 10 00
Q ss_pred cCCCccCCCCccCCCCCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 375 WSGGLYVSPTVAGSRPGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
...+.+ ...++-.+. ..++..++|+.+-++ +..++..++.++|.+.|++
T Consensus 308 ~~~~~~---~h~~T~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~ 358 (451)
T PRK07678 308 GEYEHF---RHVNTFGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKE 358 (451)
T ss_pred Cccccc---ccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence 000000 011122222 133445555555333 3556666777777777653
No 329
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.09 E-value=2.1e-08 Score=102.77 Aligned_cols=235 Identities=20% Similarity=0.192 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHhhcC--
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQYFN-- 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~~~G-- 247 (438)
...++.+.+++++..+.+. + .|+++||||+..|++.+|.+...+ |. .+.+|+.-..+|.. ..-+...-|
T Consensus 93 ~~~~la~~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~~-g~~~r~~ii~~~~~yHG~t~gals~~~~~ 165 (445)
T PRK09221 93 LAFELAERLAELAPGGLDH----V--FFTNSGSESVDTALKIALAYHRAR-GQGTRTRLIGRERGYHGVGFGGISVGGIV 165 (445)
T ss_pred HHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHhc-CCCCCcEEEEECCCcCccchhhhccCCCh
Confidence 3445667788877432233 5 899999999999999999865432 21 24567665554333 222221111
Q ss_pred ----------cEEEEeeCCC---C--Cc--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 248 ----------IKLWRVPVDK---E--FR--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 248 ----------i~v~~v~~~~---~--~~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
..+..+|... . +. -..+++++.+. +++.+|++.......|.+.| +++|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~ 245 (445)
T PRK09221 166 NNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLR 245 (445)
T ss_pred hhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHH
Confidence 1233344321 0 00 12457777774 45789999988888899888 99999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~ 373 (438)
++|++||+++++|+++.|+.. .|. .+.+...|+ |+++++ |.+.+. ...|.++.+++ +.+.. ...+
T Consensus 246 ~lc~~~g~llI~DEV~tG~GR-----tG~---~~~~~~~gv~PDi~~~g--K~l~gG~~Pi~av~~~~~-i~~~~-~~~~ 313 (445)
T PRK09221 246 EICDKHGILLIFDEVITGFGR-----LGA---AFAAERFGVTPDIITFA--KGLTNGAIPMGAVIASDE-IYDAF-MQGP 313 (445)
T ss_pred HHHHHcCCEEEEeehhhCCCc-----Cch---hhHHHhcCCCCCEEEec--cccccCcccceeeEEcHH-HHHhh-ccCc
Confidence 999999999999999877642 111 111222233 777765 554322 22566666643 32211 0000
Q ss_pred ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..........+..| .+-+ .++..++|+.+.++ +..++..++.+++++.|+++
T Consensus 314 ~~~~~~~~~~T~~~-~pl~-~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l 365 (445)
T PRK09221 314 EYAIEFFHGYTYSA-HPVA-CAAGLATLDIYREE---DLFERAAELAPYFEDAVHSL 365 (445)
T ss_pred ccccccccccCCCc-CHHH-HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Confidence 00000000111111 1111 33444566655443 45677888888888888765
No 330
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.09 E-value=2.1e-08 Score=102.75 Aligned_cols=236 Identities=20% Similarity=0.188 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~G- 247 (438)
+.+.++.+.+++++..+.+. + .++++||||+..|++.+|.+... +|. .+.+||.-..+|... .-+...-|
T Consensus 89 ~~~~~la~~l~~~~p~~~~~----v--~f~~sGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~gals~tg~ 161 (442)
T PRK13360 89 PKAFELANRIAEIAPGGLNH----V--FFTNSGSESVDTALKIALAYHRA-RGEGSRTRLIGRERGYHGVGFGGISVGGI 161 (442)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEcCCcCCccHhhhhccCC
Confidence 33456777788876422222 5 89999999999999999976432 222 245777666554332 22221111
Q ss_pred -----------cEEEEeeCCCC-----Cc--------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 248 -----------IKLWRVPVDKE-----FR--------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 248 -----------i~v~~v~~~~~-----~~--------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
-.+..+|...+ +. -+.+++++++. +++.+|++.......|.+.| +++|
T Consensus 162 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~l 241 (442)
T PRK13360 162 VPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRL 241 (442)
T ss_pred hhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHH
Confidence 12334443211 10 12567888885 45788888888888898888 9999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~ 372 (438)
.++|++||+++++|+++.|+.. .|. .+.+...| .|++++ .|.+.+. ..+|.++.+++ +.+. +...
T Consensus 242 r~lc~~~g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDivt~--gK~l~gG~~P~gav~~~~~-i~~~-~~~~ 309 (442)
T PRK13360 242 REICDKHGILLIFDEVITGFGR-----LGA---PFAAQYFGVTPDLLTC--AKGLTNGAIPMGAVFVSSE-IHDA-FMQG 309 (442)
T ss_pred HHHHHHcCCEEEEechhhCCCC-----Ccc---chhhhhcCCCCceeee--eeccccCccceEEEEEcHH-HHHH-hhcC
Confidence 9999999999999999977643 121 12122233 377765 4875433 23666677643 3211 1100
Q ss_pred cccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+..........+..| .+ ...++..++|+.+.++ +..++..++.+++.+.|+++
T Consensus 310 ~~~~~~~~~~~T~~g-~p-l~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l 362 (442)
T PRK13360 310 PEAGIEFFHGYTYSG-HP-LACAAALATLDLYERE---GLLTRAARLAPYWEDALHSL 362 (442)
T ss_pred CccccccccCCCCCC-CH-HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence 000000001112211 11 1234555666665444 35567777777888877654
No 331
>PRK07481 hypothetical protein; Provisional
Probab=99.09 E-value=3.1e-08 Score=101.75 Aligned_cols=235 Identities=20% Similarity=0.166 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCcH-HHHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSAY-DKAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s~-~~a~~~~G- 247 (438)
+.+.++.+.++++++.+.-+ .+ .++++||||+..|++.+|.+... .|. .+.+|+.-..+|... .-+...-|
T Consensus 86 ~~~~~lae~L~~~~~~~~~~---~v--~f~~sGsEAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~ga~s~~~~ 159 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMR---RV--FFSSGGSDSVETALKLARQYWKV-RGQPERTKFISLKQGYHGTHFGGASVNGN 159 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCC---EE--EEcCchHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcchhhhccCCC
Confidence 34456677788877422111 24 89999999999999999976532 232 245677666554332 22222111
Q ss_pred -----------cEEEEeeCCCC----Cc-cCHHH--------HHHhhc----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 248 -----------IKLWRVPVDKE----FR-ADVKA--------IKKYIN----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 248 -----------i~v~~v~~~~~----~~-~d~~~--------Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
-.+..++.+.. +. -|+++ +|+.|. +++.+|++.......|.+.| ++++
T Consensus 160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~l 239 (449)
T PRK07481 160 TVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLV 239 (449)
T ss_pred cccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHH
Confidence 01233332211 11 13333 455553 45889999988877787765 8999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~ 372 (438)
.++|++||+.++.|+++.||.. .|. .+.+...| .|+++++ |.+.++. .+|.++.+++ +... +...
T Consensus 240 r~lc~~~g~llI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~-i~~~-~~~~ 307 (449)
T PRK07481 240 REVCDRHGILLIADEVVTGFGR-----TGS---WFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNAR-IADA-FEAN 307 (449)
T ss_pred HHHHHHcCCEEEEeehhhCcCc-----Cch---hhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcHH-HHHH-Hhcc
Confidence 9999999999999999988743 111 11122233 3888874 7654442 4677787754 2211 1000
Q ss_pred cccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
....+.. ...++-.+.. .++..++|+.+.++ +..++..++.++|.+.|+++
T Consensus 308 -~~~~~~~---~h~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l 360 (449)
T PRK07481 308 -ADFGGAI---MHGYTYSGHPVACAAALATLDIVVRE---DLPANAAKRGAYLLEGLQPL 360 (449)
T ss_pred -Ccccccc---ccCCCCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0111222222 23444555544333 45566666777777777653
No 332
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.09 E-value=1.9e-08 Score=102.79 Aligned_cols=216 Identities=20% Similarity=0.283 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-- 248 (438)
.+.++.+.+++++.. .+. + .|+++||||+..|++.+|.+ .| +.+|+.-..+ |....-+....|-
T Consensus 94 ~~~~la~~l~~~~p~-~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~ 160 (428)
T PRK12389 94 LEIEFAKMLKEAIPS-LEK----V--RFVNSGTEAVMTTIRVARAY----TG--RTKIIKFAGCYHGHSDLVLVAAGSGP 160 (428)
T ss_pred HHHHHHHHHHHhCCC-CcE----E--EEeCCHHHHHHHHHHHHHHh----hC--CCEEEEECCCcCCChHHHHHhcCCcc
Confidence 345667777777642 222 5 89999999999999999975 23 3567665554 4433333332221
Q ss_pred -----------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCC
Q 013675 249 -----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGT 304 (438)
Q Consensus 249 -----------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i 304 (438)
.+..+|. -|++++++.++ +++.+|++.......|.+.| +++|.++|++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~ 235 (428)
T PRK12389 161 STLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGA 235 (428)
T ss_pred cccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 1112221 27899998885 35788888888888898888 9999999999999
Q ss_pred eEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCC
Q 013675 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS 382 (438)
Q Consensus 305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~ 382 (438)
.+++|+++.||-..+. +.....| .|++++ .|.+.+....|.++.++ ++... +. . .+..+
T Consensus 236 llI~DEV~tG~Rt~~~---------~a~~~~gv~PDivt~--gK~lggG~Pi~av~~~~-~i~~~-~~--~--~~~~~-- 296 (428)
T PRK12389 236 LVIYDEVITAFRFMYG---------GAQDLLGVEPDLTAL--GKIIGGGLPIGAYGGRK-DIMEQ-VA--P--LGPAY-- 296 (428)
T ss_pred EEEEEccccccccCcc---------hhhHHhCCCCCeeee--chhhcCCCceeEEeEHH-HHHhh-hc--c--CCCcc--
Confidence 9999999988721110 0011122 377665 47765555677776654 33221 10 0 01001
Q ss_pred CCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 383 PTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 383 ~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
..++-.+.. .++..++|+.+.++ +..++..++.++|++.|++
T Consensus 297 --~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 297 --QAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILE 340 (428)
T ss_pred --cccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence 111212221 33455566655433 3566777778888887765
No 333
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.08 E-value=2.3e-08 Score=103.04 Aligned_cols=233 Identities=16% Similarity=0.142 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCc-CcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAH-SAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h-~s~~~a~~~~Gi 248 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+| -...-+...-|.
T Consensus 90 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlKlAr~~~~~-~g~t~r~~ii~~~~~yHG~t~ga~s~~~~ 162 (466)
T PRK07030 90 EPVIELSERLVKITPPGLSR----C--FYADNGSSAIEVALKMSFHYWRN-RGKPRKKRFVTLTNSYHGETLAAMSVGDV 162 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCcCcccHHHHhccCC
Confidence 44556777788876422222 5 89999999999999999976432 232 245676665554 333333322221
Q ss_pred ------------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHH
Q 013675 249 ------------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 ------------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~ 296 (438)
.+..+|..... .-+++++++.++ +++.+|++.. .....|.+.+ +++|.
T Consensus 163 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr 242 (466)
T PRK07030 163 ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242 (466)
T ss_pred ccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence 13334432111 113566788885 4577888887 4666677654 88999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecccccccchhccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~ 373 (438)
++|++||+.+++|+++.||.. .|. -+.....|+ |+++++ |.+.+.. ..|.++.+++ +.+. +. .
T Consensus 243 ~lc~~~g~llI~DEV~TGfGR-----tG~---~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~e-i~~~-~~--~ 308 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGR-----TGT---MFACEQAGIRPDFLCLS--KALTGGYLPLAAVLTTDT-VYQA-FY--D 308 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCc-----ccc---chHHHhcCCCCCEEeee--hhccCCcccceEEEecHH-HHHH-Hh--c
Confidence 999999999999999987743 111 122222343 888884 7655552 5777777654 2211 10 0
Q ss_pred ccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.... ......+ +-.+.. .++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 309 ~~~~---~~~~~h~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l 362 (466)
T PRK07030 309 DYPT---LRAFLHSHSYTGNPLACAAALATLDIFEQD---NVIENNRALARRMAEATAHL 362 (466)
T ss_pred cccc---ccccccCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 0000 0001111 112221 23444455555333 45677777888888887664
No 334
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.08 E-value=1.7e-08 Score=99.86 Aligned_cols=219 Identities=23% Similarity=0.318 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc-
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF- 246 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~- 246 (438)
..+.|-++.+.+++++..-+- + -|+++||||++.|++.+|-+. | |++|+.-+.+ |...+...--.
T Consensus 91 Pte~Ei~~Aell~~~~p~~e~-----v--rfvnSGTEAtmsAiRlARa~T----g--R~kIikF~G~YHG~~D~~lv~ag 157 (432)
T COG0001 91 PTELEVELAELLIERVPSIEK-----V--RFVNSGTEATMSAIRLARAYT----G--RDKIIKFEGCYHGHSDSLLVKAG 157 (432)
T ss_pred CCHHHHHHHHHHHHhcCcccE-----E--EEecchhHHHHHHHHHHHHhh----C--CCeEEEEcCCCCCCccHHHhhcC
Confidence 346788888999999877322 5 899999999999999998652 2 4677766555 44444333322
Q ss_pred ------------Cc------EEEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHH
Q 013675 247 ------------NI------KLWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALS 301 (438)
Q Consensus 247 ------------Gi------~v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~ 301 (438)
|+ .++.+|.+ |++++++++++ +.++|++.......|.+.| +++|.++|++
T Consensus 158 sg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e 232 (432)
T COG0001 158 SGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEE 232 (432)
T ss_pred cCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 22 34555555 89999999975 5788988888888999877 7899999999
Q ss_pred cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCc
Q 013675 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (438)
Q Consensus 302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~ 379 (438)
+|+.++.|++..||-+++- | .....|+ |..++ -|...++..+|++.-|. ++.+..-. .|..
T Consensus 233 ~G~lLI~DEViTGFR~~~g---G------aq~~~gi~PDlttl--GKiIGGGlP~ga~gGr~-eiM~~~~p-----~g~v 295 (432)
T COG0001 233 HGALLIFDEVITGFRVALG---G------AQGYYGVEPDLTTL--GKIIGGGLPIGAFGGRA-EIMEQLAP-----LGPV 295 (432)
T ss_pred cCcEEEEecchhhcccCCc---c------cccccCcCcchhhh--hhhhcCCcceeeeccHH-HHHhhhCC-----CCCc
Confidence 9999999999988776421 1 1122333 66655 48877888888866653 33321111 1222
Q ss_pred cCCCCccCCCCCch--HHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhc
Q 013675 380 YVSPTVAGSRPGGL--IAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 380 ~~~~~~~gsr~~~~--ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
|. .|+-+|.. +++-.++++.+-+ ++ ..++..+++++|++.|++
T Consensus 296 yq----aGT~sgnplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~ 341 (432)
T COG0001 296 YQ----AGTLSGNPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRA 341 (432)
T ss_pred cc----cCCCCCcHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHH
Confidence 22 33444432 4456666666543 22 345555566666666554
No 335
>PRK07036 hypothetical protein; Provisional
Probab=99.07 E-value=3.7e-08 Score=101.53 Aligned_cols=233 Identities=19% Similarity=0.167 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+.+.++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+...-|-
T Consensus 95 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~ 167 (466)
T PRK07036 95 APAAELAAKLAELAPGDLNH----V--FLTTGGSTAVDSALRFVHYYFNV-RGRPAKKHIITRGDAYHGSTYLTASLTGK 167 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHHh-cCCCCccEEEEEcCccCCccHhhhcccCC
Confidence 34556677777776433232 5 89999999999999999875432 232 24567665554 4333222221111
Q ss_pred ------------EEEEeeCCCC----Ccc--------CHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 249 ------------KLWRVPVDKE----FRA--------DVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 ------------~v~~v~~~~~----~~~--------d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
.+..+|.... ..+ .++.+++.+. +++.+|++.......|.+.| +++|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr 247 (466)
T PRK07036 168 AADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMR 247 (466)
T ss_pred CcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHH
Confidence 1333443211 011 1345666663 45789999988877888876 89999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccC-CCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS-VQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~-~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~ 372 (438)
++|++||+.+++|+++.||.. .|. .+... ..| .|+++++ |.+.++. .+|.++.+++ +.+. +..
T Consensus 248 ~lc~~~g~llI~DEV~tGfGR-----tG~---~~~~~~~~gv~PDivt~g--K~l~gG~~Pi~av~~~~~-i~~~-~~~- 314 (466)
T PRK07036 248 EICRRYDILYISDEVVTGFGR-----LGH---FFASEAVFGIQPDIITFA--KGLTSGYQPLGAVIISER-LLDV-ISG- 314 (466)
T ss_pred HHHHHcCCEEEEeechhCCCc-----Cch---hhhhhhhcCCCCCEEEEc--cccccCccccEEEEEcHH-HHHH-Hhc-
Confidence 999999999999999987743 110 11111 123 3888774 7754442 4777777644 3221 100
Q ss_pred cccCCCccCCCCccC-CCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVAG-SRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~g-sr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
....+..+ ..| +-.+.. .++..++|+.+.+ .+..++..++.++|.+.|+++
T Consensus 315 ~~~~~~~~----~~~~T~~gnpl~~aaa~a~Le~i~~---~~l~~~~~~~g~~l~~~L~~l 368 (466)
T PRK07036 315 PNAKGNVF----THGFTYSGHPVACAAALKNIEIMER---EGLCEHVREVGPYFEERLASL 368 (466)
T ss_pred ccCcCccc----ccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHh
Confidence 00001111 111 111211 2333444444432 356677778888888887654
No 336
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.07 E-value=9e-09 Score=105.16 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh-c--Cc-
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-F--NI- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~-~--Gi- 248 (438)
..++.+.+++.+... +. + .+|+|||+|+..|++.+|.+. | +++|+....+|......+.. . |.
T Consensus 90 ~~~lae~l~~~~~~~-~~----v--~~~~sGseA~e~Alk~ar~~~----g--r~~ii~~~~~yhG~~~~~~~~~~~~~~ 156 (423)
T TIGR00713 90 EILLAKEIISRVPSV-EM----V--RFVNSGTEATMSAVRLARGYT----G--RDKIIKFEGCYHGHHDALLVKAGSGAA 156 (423)
T ss_pred HHHHHHHHHHhCCcc-cE----E--EEeCCHHHHHHHHHHHHHHhh----C--CCEEEEEcCCCCCChhhhhccccCccc
Confidence 345566677766543 23 5 899999999999999998752 2 36888887776554322221 0 10
Q ss_pred ----------------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEe-cCCCCCccccC----HHHHHHHHHHcCC
Q 013675 249 ----------------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGS-APGFPHGIIDP----IQELGELALSHGT 304 (438)
Q Consensus 249 ----------------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~-~~~~~tG~idd----i~~I~~la~~~~i 304 (438)
....+|. -|+++++++++ +++++|++. .+++ +|.+.| +++|.++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~ 230 (423)
T TIGR00713 157 TLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGS 230 (423)
T ss_pred ccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCC
Confidence 0111221 28999999997 567888886 5555 798866 7899999999999
Q ss_pred eEEEeccccchhh--hhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 305 CLHVDLCLGGFVL--PFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 305 ~lhVD~a~gg~~~--pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
++++|+++.|+.. .+... .++. ..|.+ +..|.+.+....|+++.+++
T Consensus 231 llI~DEv~~g~r~g~~~~~~------~~~~---~pDi~--t~sK~l~~G~pig~v~~~~~ 279 (423)
T TIGR00713 231 LLIFDEVMTGFRVALGGAQE------YFGV---EPDLT--TLGKIIGGGLPVGAFGGRRE 279 (423)
T ss_pred EEEEEccccccccCcchhHH------HhCC---Ccchh--hhhhhhcCCCceeeeeEHHH
Confidence 9999999987732 11110 0111 12544 35688554455788777643
No 337
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.06 E-value=5.5e-08 Score=99.68 Aligned_cols=221 Identities=24% Similarity=0.188 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+.+.++.+.+++++..+ .+. + .|+++||||+..|++.+|.+ .| +++|+.-..+ |....-+...-|-
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~~ls~t~~ 164 (441)
T PRK05769 97 EPAVELAERLVEIAPGGFEKK----V--FFTNSGTESNEAAIKIARYH----TG--RKYIIAFLGAFHGRTYGSLSLTAS 164 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCCE----E--EECCchHHHHHHHHHHHHHH----hC--CCeEEEECCCcCCccHHHHHhcCC
Confidence 34566777888887432 122 5 89999999999999999965 23 3567765554 4433333322111
Q ss_pred -------------EEEEeeCCCCCc-------------cCHHHHHH-hhc-----cCcEEEEEecCCCCCccccC----H
Q 013675 249 -------------KLWRVPVDKEFR-------------ADVKAIKK-YIN-----RNTVLIVGSAPGFPHGIIDP----I 292 (438)
Q Consensus 249 -------------~v~~v~~~~~~~-------------~d~~~Le~-~I~-----~~t~~vv~~~~~~~tG~idd----i 292 (438)
.+..+|.....+ -+++.+++ .++ +++.+|++.......|.+.| +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l 244 (441)
T PRK05769 165 KPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFF 244 (441)
T ss_pred CcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHH
Confidence 234444422111 12344666 322 35778888888777888888 9
Q ss_pred HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchh
Q 013675 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV 370 (438)
Q Consensus 293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~ 370 (438)
++|.++|++||+.+++|++++|+.. .|. .+.+...|+ |.++++ |.+.++...|+++.+++ +... .
T Consensus 245 ~~l~~l~~~~g~lli~DEv~tG~gr-----~G~---~~a~~~~gv~pDivt~~--K~l~~G~p~gav~~~~~-i~~~--~ 311 (441)
T PRK05769 245 KELRKLADKYGILLIDDEVQTGMGR-----TGK---MFAIEHFGVEPDIITLA--KAIAGGLPLGAVIGRAE-LMFL--P 311 (441)
T ss_pred HHHHHHHHHcCCEEEEechhhCCCc-----ccc---eehhhccCCCCCEEEEc--ccccCCcccEEEEEehh-hhhc--C
Confidence 9999999999999999999987543 121 112222233 888764 76555566788777654 2211 0
Q ss_pred cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 371 AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 371 ~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
.... ..+..| .+ ...++..++|+.+.+ +..++..++.++|++.|++
T Consensus 312 --~~~~-----~~T~~g-~p-~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~ 357 (441)
T PRK05769 312 --PGSH-----ANTFGG-NP-VAAAAALATLEELEE----GLLENAQKLGEYLRKELKE 357 (441)
T ss_pred --CCCC-----CCCCCc-CH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 0011 112222 11 123345555655532 5667777788888887765
No 338
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.06 E-value=1.6e-08 Score=104.10 Aligned_cols=220 Identities=18% Similarity=0.207 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhc---
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYF--- 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~--- 246 (438)
+.+.++.+.+++.+.. .+. + .|+++||||+..|++.+|.+ .| +++|+.-..+|..+. ......
T Consensus 139 ~~~~~lAe~l~~~~p~-~~~----v--~f~~SGsEA~e~AlklAR~~----tg--r~~Ii~~~g~YHG~~~~~~~~~~~~ 205 (474)
T PLN02482 139 LLENVLAEMVIDAVPS-VEM----V--RFVNSGTEACMGVLRLARAY----TG--REKIIKFEGCYHGHADSFLVKAGSG 205 (474)
T ss_pred HHHHHHHHHHHHhCCC-CCE----E--EEeCChHHHHHHHHHHHHHh----cC--CCEEEEECCccCCCcchhhhhcCCC
Confidence 4566778888888743 222 5 89999999999999999975 33 356776555443322 111100
Q ss_pred ----------Cc------EEEEeeCCCCCccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675 247 ----------NI------KLWRVPVDKEFRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (438)
Q Consensus 247 ----------Gi------~v~~v~~~~~~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~ 303 (438)
|+ .+..+|. -|++++++.++ +++.+|++.......|.+.| +++|.++|++||
T Consensus 206 ~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g 280 (474)
T PLN02482 206 VATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENG 280 (474)
T ss_pred ccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 11 1111221 17899999886 35778888888777888766 668999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 381 (438)
+.+++|+++.|+-.. . + +.....| .|.+++ .|.+.+...+|.++.++ ++.+.. . + .+..+.
T Consensus 281 ~lLI~DEV~tGfR~g---~-~-----ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~-ei~~~~-~--~--~~~~~~ 343 (474)
T PLN02482 281 ALLVFDEVMTGFRIA---Y-G-----GAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR-EIMEMV-A--P--AGPMYQ 343 (474)
T ss_pred CEEEEeccccCeecC---c-c-----hHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH-HHHHhh-c--c--CCCccc
Confidence 999999998776321 0 0 1111122 477666 58865556678876654 332211 0 0 011111
Q ss_pred CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+..|.. ...++..++|+.+.. .+..++..++.++|++.|+++
T Consensus 344 ~~T~~gnp--l~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 344 AGTLSGNP--LAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred ccCcchhH--HHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHH
Confidence 11111111 113345556665533 346667777788888777653
No 339
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.05 E-value=4.4e-08 Score=100.07 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc--
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF-- 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~-- 246 (438)
+...++.+.+++++..+... ...+ .| +++||||+..|++.+|.+ .| +++|+.-..+ |-...-+...-
T Consensus 82 ~~~~~lae~l~~~~~~~~~~-~~~~--~f~~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~ls~~~~ 152 (425)
T PRK09264 82 TAKREFLETFEETILKPRGL-DYKV--QFTGPTGTNAVEAALKLARKV----TG--RTNIVAFTNGFHGMTLGSLAVTGN 152 (425)
T ss_pred HHHHHHHHHHHHhhcCCcCC-CceE--EEeCCCHHHHHHHHHHHHHHh----cC--CCeEEEECCccCCccHHHHHhcCC
Confidence 34455666777765332110 0012 45 589999999999999975 33 3567765554 43332222221
Q ss_pred -------Cc---EEEEeeCCCCC---ccCHHHHHHhhcc------CcEEEEEecCCCCCcccc----CHHHHHHHHHHcC
Q 013675 247 -------NI---KLWRVPVDKEF---RADVKAIKKYINR------NTVLIVGSAPGFPHGIID----PIQELGELALSHG 303 (438)
Q Consensus 247 -------Gi---~v~~v~~~~~~---~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~id----di~~I~~la~~~~ 303 (438)
|. .+..+|..... .-|++++++.+++ ++++|++.......|.+. .+++|.++|++||
T Consensus 153 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g 232 (425)
T PRK09264 153 SHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHD 232 (425)
T ss_pred cccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 11 34556553211 1367888988852 467888888877777653 4899999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEEecc
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLYRNR 362 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~r~~ 362 (438)
+++++|++++|+.. .|... .++......|+++++ |.+.+ ...+|+++.+++
T Consensus 233 ~llI~DEV~tG~Gr-----tG~~~-~~~~~~v~PDi~t~~--K~l~~~G~pigav~~~~~ 284 (425)
T PRK09264 233 ILLIVDDIQAGCGR-----TGTFF-SFERAGITPDIVTLS--KSISGYGLPMALVLIKPE 284 (425)
T ss_pred cEEEEechhhCCcc-----ccHHH-HHhhcCCCCCEEEec--cccCCCccceEEEEEchh
Confidence 99999999987642 11000 011111124777775 87433 334688888754
No 340
>PRK06062 hypothetical protein; Provisional
Probab=99.04 E-value=1.9e-08 Score=103.41 Aligned_cols=169 Identities=20% Similarity=0.187 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
+...++.+.++++...+.+. + .|+++||||+..|++.+|.+ .| +++|+....+ |-...-+...-|.
T Consensus 95 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~~~~~ 162 (451)
T PRK06062 95 DARSEAARLIAERAPGDLSK----V--FFTNGGADANEHAVRMARLH----TG--RPKVLSAYRSYHGGTGSAINLTGDP 162 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEcCChHHHHHHHHHHHHHh----hC--CceEEEEeCCCCCCCHHHHhhcCCc
Confidence 34456667787776432233 5 89999999999999999975 23 3567766554 4443333332221
Q ss_pred ----------EEEEeeCCCCCc------cC-------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675 249 ----------KLWRVPVDKEFR------AD-------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGE 297 (438)
Q Consensus 249 ----------~v~~v~~~~~~~------~d-------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~ 297 (438)
.+..++....++ -| ++++++.++ +++.+|++.......|.+.| +++|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~ 242 (451)
T PRK06062 163 RRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRE 242 (451)
T ss_pred ccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHH
Confidence 122333221111 12 678888885 35788888888877888887 999999
Q ss_pred HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEec
Q 013675 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRN 361 (438)
Q Consensus 298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~ 361 (438)
+|++||+.+++|++++||.. .|. .+.....| .|++++ .|.+.++. .+|.++.++
T Consensus 243 lc~~~g~lLI~DEV~tGfGR-----tG~---~~a~~~~gv~PDi~t~--gK~lggG~~Pigav~~~~ 299 (451)
T PRK06062 243 LCDRHGIVLIADEVMAGFGR-----TGK---WFAIEHFGVVPDLITF--AKGVNSGYVPLGGVAISE 299 (451)
T ss_pred HHHHcCCEEEeeccccCCCc-----CcH---HHHHHhcCCCCCeeee--chhhhcCCcCcEEEEEcH
Confidence 99999999999999988643 111 11111223 487776 48755543 467777775
No 341
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.04 E-value=1e-08 Score=102.52 Aligned_cols=253 Identities=19% Similarity=0.157 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhc
Q 013675 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR 222 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~ 222 (438)
+.+.+.+-+......++......| . .++.++++++.. .+-+. + .+++|||+|+..|++.++.+... +
T Consensus 65 i~~Ai~~Q~~~l~~~~~~~~t~~P-a----~~LA~~L~~~aP~~~l~~----v--Ff~~sGSeAvEtAlKma~qY~~~-~ 132 (449)
T COG0161 65 IAEAIKKQLDKLPHVMFGGFTHEP-A----IELAEKLAELAPEGGLDH----V--FFTDSGSEAVETALKMALQYWRA-R 132 (449)
T ss_pred HHHHHHHHHHhCCchhhcccCCch-H----HHHHHHHHHhCCCCCccE----E--EEeCCchHHHHHHHHHHHHHHHh-c
Confidence 444444444444444444444444 2 245567888876 32333 5 89999999999999999988765 4
Q ss_pred CCC-CCeEEecCCC-cCcHHHHHhhcCc-------------EEEEeeCCC------CCc------cCHHHHHHhhcc---
Q 013675 223 GIT-RPEMIIPVSA-HSAYDKAAQYFNI-------------KLWRVPVDK------EFR------ADVKAIKKYINR--- 272 (438)
Q Consensus 223 G~~-~~~Viv~~~~-h~s~~~a~~~~Gi-------------~v~~v~~~~------~~~------~d~~~Le~~I~~--- 272 (438)
|-+ +.++|.-... |-+..-+...-|. .+..+|... ++. -..++||+.|.+
T Consensus 133 G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~ 212 (449)
T COG0161 133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGP 212 (449)
T ss_pred CCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 443 3446554444 4443333333331 344454421 111 236778888864
Q ss_pred -CcEEEEEecCCCC-CccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCC
Q 013675 273 -NTVLIVGSAPGFP-HGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDV 344 (438)
Q Consensus 273 -~t~~vv~~~~~~~-tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~ 344 (438)
+.+++++....-. .|.+.| ++++.++|++|||.++.|++-.||.. .|. .|.....|+ |+++++
T Consensus 213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGR-----TG~---~FA~e~~gi~PDi~~~a- 283 (449)
T COG0161 213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGR-----TGK---MFACEHAGIVPDILCLA- 283 (449)
T ss_pred ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCc-----Cch---hhhhhhcCCCCCeeeec-
Confidence 3567777666555 676655 89999999999999999999888764 232 344444555 898887
Q ss_pred CCCC---CCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 013675 345 HKYG---LAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421 (438)
Q Consensus 345 hK~~---~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~ 421 (438)
|.+ +.| .|.++++++-.. .- . .+. ......|....+...+|.+++..+..-.-+...++..++..
T Consensus 284 -KGLT~GY~P--l~a~l~~~~I~~-~~-~-----~~~--~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~ 351 (449)
T COG0161 284 -KGLTGGYLP--LSAVLTSDRIYE-AF-S-----DGD--AGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGA 351 (449)
T ss_pred -ccccccchh--hHhHhhhHHHHH-HH-h-----ccc--CCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 553 444 455566654221 10 0 110 11112232222233467777766654444566777778888
Q ss_pred HHHHHhhc
Q 013675 422 SIQKGLVL 429 (438)
Q Consensus 422 ~l~~~L~~ 429 (438)
++.++|++
T Consensus 352 ~l~~~L~~ 359 (449)
T COG0161 352 YLQAGLQA 359 (449)
T ss_pred HHHHHHHH
Confidence 88888886
No 342
>PRK07483 hypothetical protein; Provisional
Probab=99.04 E-value=4.1e-08 Score=100.66 Aligned_cols=174 Identities=20% Similarity=0.161 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
...++.+.+++++..+.+. + .++++||||+..|++.+|.+... +| ..+.+|+.-..+ |-...-+...-|-
T Consensus 74 ~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~~~~-~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~ 146 (443)
T PRK07483 74 PAEALADRLVAAAPAGLEH----V--YFVSGGSEAVEAALKLARQYFVE-IGQPQRRHFIARRQSYHGNTLGALAIGGNA 146 (443)
T ss_pred HHHHHHHHHHHhCCCCCCE----E--EEcCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcCHHHhhhcCCc
Confidence 3456667777776422223 5 89999999999999999986543 23 234667765544 4433322222110
Q ss_pred -----------EEEEeeCCCCCcc-------------CHHHHHHhhc----cCcEEEEEecCCC-CCccccC----HHHH
Q 013675 249 -----------KLWRVPVDKEFRA-------------DVKAIKKYIN----RNTVLIVGSAPGF-PHGIIDP----IQEL 295 (438)
Q Consensus 249 -----------~v~~v~~~~~~~~-------------d~~~Le~~I~----~~t~~vv~~~~~~-~tG~idd----i~~I 295 (438)
.+..+|....++- .++++++++. +++.+|++..... .-|.+.| +++|
T Consensus 147 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~l 226 (443)
T PRK07483 147 WRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRI 226 (443)
T ss_pred ccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHH
Confidence 1233432211110 1356777664 4577888887664 2466654 8999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNR 362 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~ 362 (438)
.++|++||+.+++|+++.||.. .|. -+.+...| .|+++++ |.+.+.. ..|.++.+++
T Consensus 227 r~lc~~~gillI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~ 286 (443)
T PRK07483 227 REVCDRYGVLLILDEVMCGMGR-----TGT---LFACEEDGVAPDLVTIA--KGLGAGYQPIGAVLASDR 286 (443)
T ss_pred HHHHHHhCCEEEEecceeCccc-----CcH---HHHHhhcCCCCCeeeeh--hhhccCccccEEEEEcHH
Confidence 9999999999999999988743 111 11122223 3888874 7755443 5788888754
No 343
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.04 E-value=3.7e-08 Score=101.56 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhCCC-----CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHh
Q 013675 172 FEAEVIAMTAALLGNK-----EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQ 244 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~-----~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~ 244 (438)
...++.+.+++++... .+. + .++++||||+..|++.+|.+... +|. .+.+|+.-..+|.. ..-+..
T Consensus 108 ~~~~lae~L~~~~p~~~~~~~~~~----v--~f~~sGSEAvE~AlKlAr~~~~~-~g~~~r~~ii~~~~syHG~t~gals 180 (472)
T PRK08742 108 PAVQLAEQLLAIAPRQDGRAPLSK----V--FYADNGSAGVEVALKMAFHYFHN-RGEHRRTRFIALENGYHGETIGALA 180 (472)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCE----E--EEeCCchHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCCchhhhh
Confidence 3456677787776431 122 5 89999999999999999987543 232 24577766655433 322222
Q ss_pred hcCc------------EEEEeeCCCCC------------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----H
Q 013675 245 YFNI------------KLWRVPVDKEF------------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----I 292 (438)
Q Consensus 245 ~~Gi------------~v~~v~~~~~~------------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i 292 (438)
.-|. .+..+|..... .-+++.+++.++ +++.+|++.. .....|.+.| +
T Consensus 181 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl 260 (472)
T PRK08742 181 VGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYL 260 (472)
T ss_pred ccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHH
Confidence 2221 23334432111 113677788875 4577888876 3555676644 8
Q ss_pred HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR 362 (438)
Q Consensus 293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~ 362 (438)
+++.++|++||+.+++|+++.||.. .|. .+.+...|+ |+++++ |.+.++. ..|.++.+++
T Consensus 261 ~~lr~lc~~~gillI~DEV~TGfGR-----tG~---~~a~e~~gv~PDiv~~g--Kgl~gG~~Plaav~~~~e 323 (472)
T PRK08742 261 RRARELCDAHGAFLIADEIATGFGR-----TGT---LFACEQAGVMPDLLCLS--KGLTGGFLPLSAVLATQQ 323 (472)
T ss_pred HHHHHHHHHcCCEEEEechhhCCCC-----Ccc---chHHHhcCCCCCEEEEc--ccccCCCCCcceeeccHH
Confidence 8999999999999999999988753 121 122233344 888884 7754442 4677777654
No 344
>PRK07480 putative aminotransferase; Validated
Probab=99.03 E-value=3.3e-08 Score=101.70 Aligned_cols=175 Identities=18% Similarity=0.141 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+...++.+.+++++..+.+. + .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |....-+...-|.
T Consensus 94 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~tl~a~s~~g~ 166 (456)
T PRK07480 94 PPAIELAAKLAEVAPPGFNH----V--FFTNSGSEANDTVLRMVRHYWAL-KGKPQKKVIISRKNGYHGSTVAGASLGGM 166 (456)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCcchhhhhccCC
Confidence 44556677788877533233 5 89999999999999999976432 232 24567665544 4433222221111
Q ss_pred ------------EEEEeeCCCCC----ccC--------HHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 249 ------------KLWRVPVDKEF----RAD--------VKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 ------------~v~~v~~~~~~----~~d--------~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
.+..+|....+ ..+ ++++++.+. +++.+|++.......|.+.| +++|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr 246 (456)
T PRK07480 167 KYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQ 246 (456)
T ss_pred hhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 12233321100 011 366666553 46788888888777788766 89999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCC-CcEEEEEecc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPK-GTSVVLYRNR 362 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~-g~g~l~~r~~ 362 (438)
++|++||+.+++|+++.||.. .|. .+.+...|+ |++++ .|.+.+.. .+|.++.+++
T Consensus 247 ~lc~~~g~llI~DEV~tGfGR-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~ 305 (456)
T PRK07480 247 RICRKYDILLVADEVICGFGR-----TGE---WFGSQHFGIKPDLMTI--AKGLTSGYIPMGAVGVGDR 305 (456)
T ss_pred HHHHHcCCEEEEechhhCCCc-----Ccc---hhhhhhcCCCCCeeee--ehhhccCCccceEEEEcHH
Confidence 999999999999999987743 221 122223344 88776 47644432 4677777644
No 345
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.03 E-value=4.3e-08 Score=100.60 Aligned_cols=224 Identities=19% Similarity=0.151 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC--
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN-- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G-- 247 (438)
+.+.++.+.+++++.....+ .+ .|+++||||+..|++.+|.+ .| +.+|+.-..+ |....-+...-+
T Consensus 85 ~~~~~lae~L~~~~p~~~~~---~v--~f~~SGseA~e~AiklAr~~----tg--r~~ii~~~~~YHG~t~~als~s~~~ 153 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDFEK---RV--TFGLSGSDANDGIIKFARAY----TG--RPYIISFTNAYHGSTYGSLSMSGIS 153 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCC---EE--EECCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCCcHHHHhhcCCC
Confidence 44556677788887533211 15 89999999999999999865 23 3466665544 554433332222
Q ss_pred -----------cEEEEeeCCCCCc-----cC-------HHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHH
Q 013675 248 -----------IKLWRVPVDKEFR-----AD-------VKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 248 -----------i~v~~v~~~~~~~-----~d-------~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
-.+..+|.....+ .+ ++++++.++ +++++|++.......|.+.| +++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l 233 (445)
T PRK08593 154 LNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEAL 233 (445)
T ss_pred cccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHH
Confidence 1234455432111 11 245555553 46889999988888888866 9999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~ 373 (438)
.++|++||+++++|+++.|+.. .|. .+.....| .|++++ .|.+.+....|+++.+++ +.+.. . .
T Consensus 234 ~~lc~~~g~llI~DEv~tg~Gr-----tG~---~~a~~~~gv~pDi~t~--gK~l~~G~p~gav~~~~~-i~~~~-~--~ 299 (445)
T PRK08593 234 YKFCREHGILFAVDDIQQGLGR-----TGK---WSSISHFNITPDLMSF--GKSLAGGMPMSAIVGRKE-IMESL-E--A 299 (445)
T ss_pred HHHHHHcCCEEEEechhhCCCc-----Cch---HHHHHhcCCCCCEeee--cccccCCcccEEEEEcHH-HHhhh-c--c
Confidence 9999999999999999876632 111 01111123 377765 477544455788777643 32211 0 0
Q ss_pred ccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 374 EWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
... ..+..|. + ...++..++++.+-++ +..++..++.++|.+.|++
T Consensus 300 ----~~~-~~T~~~~-p-l~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~ 345 (445)
T PRK08593 300 ----PAH-LFTTGAN-P-VSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQ 345 (445)
T ss_pred ----CCC-CCCCCCC-H-HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH
Confidence 000 0111111 1 1133455566555333 4566667777777777765
No 346
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.03 E-value=4.2e-08 Score=100.63 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC
Q 013675 171 RFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G 247 (438)
+...++.+.+++++... ... + -.++++||||+..|++.+|.+ .| +++|+.-..+ |....-+....|
T Consensus 82 ~~~~~lae~L~~~~p~~~~~~~----~-~f~~~sGsEA~e~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~~~s~t~ 150 (442)
T TIGR00709 82 PLKDAFIEALLNIIPKRKMDYK----L-QFPGPSGADAVEAAIKLAKTY----TG--RTNVISFSGGFHGMTIGALAVTG 150 (442)
T ss_pred HHHHHHHHHHHHhCCCcCCCcc----E-EEeCCCHHHHHHHHHHHHHHh----cC--CCeEEEEcCCcCCchHHHHhhcC
Confidence 44556777788887532 112 2 145689999999999999975 33 3567766555 444333333322
Q ss_pred ------------cEEEEeeCCCCCcc--------CH----HHHHHhhc------cCcEEEEEecCCCCCccccC----HH
Q 013675 248 ------------IKLWRVPVDKEFRA--------DV----KAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQ 293 (438)
Q Consensus 248 ------------i~v~~v~~~~~~~~--------d~----~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~ 293 (438)
..+..+|.....+. +. +.+++.++ +++.+|++.......|.+.+ ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~ 230 (442)
T TIGR00709 151 NLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQ 230 (442)
T ss_pred ChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHH
Confidence 12334443221111 11 22444443 35778888887777777643 88
Q ss_pred HHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhc
Q 013675 294 ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVA 371 (438)
Q Consensus 294 ~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~ 371 (438)
+|.++|++||++++.|+++.||... |. .+.+...| .|++++ .|.+.++..+|+++.+++ ....
T Consensus 231 ~lr~lc~~~g~llI~DEV~tGfGRt-----G~---~~a~~~~gv~PDiv~~--gK~l~~G~Pigav~~~~~-~~~~---- 295 (442)
T TIGR00709 231 KIREVTRKHDIKLILDEVQAGFGRS-----GT---MFAFEHAGIEPDFVVM--SKAVGGGLPLAVLLIAPE-FDAW---- 295 (442)
T ss_pred HHHHHHHHcCCEEEEeccccCCCCC-----Cc---hhHHHHcCCCCcEEEE--cccccCCcccEEEEEchH-Hhcc----
Confidence 9999999999999999999887531 11 11111223 388885 577555566888888755 3211
Q ss_pred ccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 372 VTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 372 ~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
.... ...+..|. +- ..++..++|+.+.++ +..++..++.++|.+.|++
T Consensus 296 ----~~~~-~~~T~~gn-pl-a~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~ 343 (442)
T TIGR00709 296 ----QPAG-HTGTFRGN-QL-AMVTGTEALNYWKDD---NLAQNAQERGERITSFLDD 343 (442)
T ss_pred ----CCCc-CCCCCCcC-HH-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence 0000 01111111 11 123444455444333 4455666777777777765
No 347
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.02 E-value=4.2e-08 Score=101.03 Aligned_cols=233 Identities=15% Similarity=0.155 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi 248 (438)
+.+.++.+.+++++..+.+. + .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |....-+...-|-
T Consensus 99 ~~~~~lae~L~~~~p~~~~~----v--~f~~SGseAve~AlklAr~~~~~-~g~tgr~~ii~~~~~YHG~t~~als~s~~ 171 (460)
T PRK06916 99 VPSILLAEKLIEVVPEGLKK----V--FYSDSGATAVEIAIKMAFQYWQN-KGKPKKQRFVTLKNAYHGDTIGAVSVGAI 171 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCcCCcccHHhHhccCC
Confidence 34556777788887533233 5 89999999999999999976433 232 24677766655 4433333332221
Q ss_pred ------------EEEEeeCCCC----C--------ccCHHHHHHhhc---cCcEEEEEec-CCCCCccccC----HHHHH
Q 013675 249 ------------KLWRVPVDKE----F--------RADVKAIKKYIN---RNTVLIVGSA-PGFPHGIIDP----IQELG 296 (438)
Q Consensus 249 ------------~v~~v~~~~~----~--------~~d~~~Le~~I~---~~t~~vv~~~-~~~~tG~idd----i~~I~ 296 (438)
.+..+|.... . .-+++++++.++ +++.+|++.. .....|.+.| ++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr 251 (460)
T PRK06916 172 DLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLR 251 (460)
T ss_pred cccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHH
Confidence 2333433210 0 124677788885 4678888887 4666677643 88999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~ 373 (438)
++|++||+++++|+++.|+.. .|. .+.+...| .|++++ -|.+.+. ..+|.++.+++ +... +. .
T Consensus 252 ~lc~~~g~llI~DEV~TG~GR-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~e-i~~~-~~--~ 317 (460)
T PRK06916 252 NLCTKYNVLFITDEVATGFGR-----TGK---MFACEHENVTPDIMTA--GKGLTGGYLPIAITVTTDE-IYNA-FY--G 317 (460)
T ss_pred HHHHHcCCEEEeechhhCCCc-----Cch---hhHHHhcCCCCCeeee--ehhhhcCccccceeeecHH-HHHH-hh--c
Confidence 999999999999999887632 121 11222233 388876 4765444 25777777654 2211 10 0
Q ss_pred ccCC-CccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSG-GLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g-~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
++.. +... ..++-.+.. .++..++|+.+.++ +..++..++.+++.+.|+++
T Consensus 318 ~~~~~~~~~---~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l 371 (460)
T PRK06916 318 DYEEQKTFF---HGHSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDL 371 (460)
T ss_pred cccccCccc---cCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence 1100 0000 011111221 33444455544333 45677778888888888764
No 348
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.02 E-value=3.6e-08 Score=100.43 Aligned_cols=230 Identities=18% Similarity=0.158 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
...++.+.++++...+.+. + .++++||||+..|++.+|.+... +|. .+.+|+.-..+ |-...-+....+-
T Consensus 84 ~~~~lae~L~~~~p~~~~~----v--~f~~SGseA~e~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~als~~~~~ 156 (422)
T PRK05630 84 PAIKLTRKLLNLTDNGLDH----V--FYSDSGSVSVEVAIKMALQYSKG-QGHPERTRLLTWRSGYHGDTFAAMSVCDPE 156 (422)
T ss_pred HHHHHHHHHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCcCCccHHHhccCCCc
Confidence 3455666777776432233 5 89999999999999999986533 232 24567666554 4433333322110
Q ss_pred ------------EEEEeeCCCCCccC-------HHHHHHhhccCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCC
Q 013675 249 ------------KLWRVPVDKEFRAD-------VKAIKKYINRNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGT 304 (438)
Q Consensus 249 ------------~v~~v~~~~~~~~d-------~~~Le~~I~~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i 304 (438)
....+|.......+ .+.+++.+.+++.+|++... ....|.+.| +++|.++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ 236 (422)
T PRK05630 157 GGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDI 236 (422)
T ss_pred ccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC
Confidence 22334432111111 34566666677888888874 666676533 8999999999999
Q ss_pred eEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCccC
Q 013675 305 CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (438)
Q Consensus 305 ~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 381 (438)
++++|+++.|+.. .|. -+.+...|+ |++++ .|.+.+. ...|+++.+++ +... + ..+ +..+.+
T Consensus 237 llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~-i~~~-~-~~~-~~~~~~- 301 (422)
T PRK05630 237 LLIADEIATGFGR-----TGE---LFATLAAGVTPDIMCV--GKALTGGFMSFAATLCTDK-VAQL-I-STP-NGGGAL- 301 (422)
T ss_pred EEEEecceeCCCc-----Cch---hhHHHhcCCCCCeeee--echhhcCccccceeeccHH-HHHH-H-hcc-CCCCcc-
Confidence 9999999877643 121 122222343 78866 5875443 24566666643 2211 0 000 000000
Q ss_pred CCCccCCC-CCc--hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 382 SPTVAGSR-PGG--LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 382 ~~~~~gsr-~~~--~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
..++. .+. ..++..++++.+.++ +..++..++.++|++.|++
T Consensus 302 ---~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~ 346 (422)
T PRK05630 302 ---MHGPTFMANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSP 346 (422)
T ss_pred ---ccCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHH
Confidence 01111 122 133445566665433 3445666777777776654
No 349
>PRK06917 hypothetical protein; Provisional
Probab=99.01 E-value=4.4e-08 Score=100.57 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCCcCc-HHHHHhhcCc
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSAHSA-YDKAAQYFNI 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~h~s-~~~a~~~~Gi 248 (438)
+...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +|. .+.+|+.-..+|.. ..-+...-|.
T Consensus 74 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGsEAve~AlklAr~~~~~-rg~t~r~~ii~~~~~yHG~t~~als~~~~ 146 (447)
T PRK06917 74 EPAEKLAKKLSDLSPGDLNW----S--FFVNSGSEANETAMKIAIQHFQE-RGIQGKHKILSRWMSYHGITMGALSMSGH 146 (447)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EEeCChHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcCCccHHHHHhcCC
Confidence 44566777888887543232 4 89999999999999999876543 332 24667766655433 3333322221
Q ss_pred ------------EEEEeeCCCCCc------------cCHHHHHHhhc----cCcEEEEEecCCCCC-ccccC----HHHH
Q 013675 249 ------------KLWRVPVDKEFR------------ADVKAIKKYIN----RNTVLIVGSAPGFPH-GIIDP----IQEL 295 (438)
Q Consensus 249 ------------~v~~v~~~~~~~------------~d~~~Le~~I~----~~t~~vv~~~~~~~t-G~idd----i~~I 295 (438)
.+..+|.....+ -|++.+++.++ +++.+|++....... |.+.| +++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~l 226 (447)
T PRK06917 147 PLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVI 226 (447)
T ss_pred ccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHH
Confidence 122233211110 13467787775 357888888765533 45543 8899
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~ 372 (438)
.++|++||+.+++|+++.||.. .|. .+.....| .|++++ .|.+.+.. ..|+++.+++ +... +...
T Consensus 227 r~lc~~~g~llI~DEv~tGfGR-----tG~---~~a~~~~gv~PDi~~~--gK~l~~G~~Pi~a~~~~~~-i~~~-~~~~ 294 (447)
T PRK06917 227 KEICDHYDILFIADEVMTGLGR-----TGA---MFAMEHWGVEPDIMTL--GKGLGAGYTPIAATVVSDR-VMEP-ILRG 294 (447)
T ss_pred HHHHHHcCCEEEEechhhCcCc-----ccc---hhhHHhcCCCCCEEEe--eehhccCCcceEEEEEcHH-HHHH-Hhcc
Confidence 9999999999999999887643 121 12122223 388776 47755443 4677777653 3211 1000
Q ss_pred cccCCCccCCCCcc-CCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 373 TEWSGGLYVSPTVA-GSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 373 ~~~~g~~~~~~~~~-gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
. + . ... ++-.+.. .++..++++.+.++ +..++..++.++|.+.|+++
T Consensus 295 ~---~-~----~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l 344 (447)
T PRK06917 295 S---R-S----IMSGHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKV 344 (447)
T ss_pred C---c-c----cccccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 011 1222211 34555566555333 45567777777777777653
No 350
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.01 E-value=6.1e-08 Score=98.61 Aligned_cols=175 Identities=17% Similarity=0.133 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeE-cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNM-TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~-t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G- 247 (438)
+...++.+.+++++..+... ...+ .| +++||||+..|++.+|.+ .| +++|+.-..+ |-...-+....|
T Consensus 78 ~~~~~lae~l~~~~~~~~~~-~~~~--~f~~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~~~~ 148 (412)
T TIGR02407 78 EAKREFLETFNEIILKPRGL-DYKV--QFPGPTGTNAVESALKLARKV----TG--RSNVVSFTNAFHGMTLGSLSVTGN 148 (412)
T ss_pred HHHHHHHHHHHHhccCccCC-CceE--EEeCCCchHHHHHHHHHHhhh----cC--CCeEEEECCCcCCchHHHHHhcCC
Confidence 44556666777765322110 0012 45 589999999999999975 23 3567765555 443333332221
Q ss_pred -----------cEEEEeeCCCCC---ccCHHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675 248 -----------IKLWRVPVDKEF---RADVKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (438)
Q Consensus 248 -----------i~v~~v~~~~~~---~~d~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~ 303 (438)
..+..+|.+.-. .-+++.+++.++ +++.+|++.....+.|.+.+ +++|.++|++||
T Consensus 149 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g 228 (412)
T TIGR02407 149 RFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHD 228 (412)
T ss_pred cccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 133445542100 124777888886 35688888888888887533 899999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCC-CCCcEEEEEecc
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLA-PKGTSVVLYRNR 362 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~-p~g~g~l~~r~~ 362 (438)
+++++|++++|+.. .|... .++......|+++++ |++.+ ...+|+++.+++
T Consensus 229 ~llI~DEV~tG~GR-----tG~~~-a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~~~ 280 (412)
T TIGR02407 229 ILLIVDDIQAGCGR-----TGTFF-SFEPAGIEPDIVCLS--KSISGYGLPLALTLIKPE 280 (412)
T ss_pred CEEEEechhhCCCc-----cchhH-HhcccCCCCCEEEec--hhccCCccceeEEEEchh
Confidence 99999999987643 11100 011111124877765 99544 455899888754
No 351
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.00 E-value=1.2e-08 Score=98.20 Aligned_cols=161 Identities=23% Similarity=0.319 Sum_probs=101.9
Q ss_pred HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCcHHHHH----------hhcC
Q 013675 179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSAYDKAA----------QYFN 247 (438)
Q Consensus 179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s~~~a~----------~~~G 247 (438)
..|+.||.+..- +-.---+||.|+.+++.+... +| |+++. +..-|-...++. +-+|
T Consensus 62 iyA~vfgaE~AL-----VRpq~vSGTHAi~~~Lfg~Lr-----pG---D~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G 128 (403)
T PF06838_consen 62 IYADVFGAEDAL-----VRPQFVSGTHAIALALFGVLR-----PG---DELLSITGKPYDTLEEVIGIRGNGPGSLKEFG 128 (403)
T ss_dssp HHHHHCT-SEEE-----EETTS-SHHHHHHHHHHHH-------TT----EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred HHHHHhCchhhh-----hcccccchHHHHHHHHHhcCC-----CC---CeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence 588999997542 112235799999999999773 88 88874 444455555555 3457
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCC----CCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhh
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPG----FPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~----~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~ 321 (438)
++.+.||+.+++.+|.+.++++++++|++|.+.--. -+.=.+++|+++.+.+|+. ++.+.||-|||-|+-
T Consensus 129 i~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE---- 204 (403)
T PF06838_consen 129 IKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE---- 204 (403)
T ss_dssp -EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS----
T ss_pred ceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc----
Confidence 899999999999999999999999999999886431 1222456677777777764 689999999997653
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCC---CCCCCcEEEEEeccccc
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYG---LAPKGTSVVLYRNREIR 365 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~---~~p~g~g~l~~r~~~~~ 365 (438)
.......|+|.+..|.=|.. .+|.| |++.-| +++.
T Consensus 205 -------~~EP~~vGADl~aGSLIKNpGGgiAptG-GYIaGr-~~lV 242 (403)
T PF06838_consen 205 -------TQEPTEVGADLMAGSLIKNPGGGIAPTG-GYIAGR-KDLV 242 (403)
T ss_dssp -------SS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEES-HHHH
T ss_pred -------ccCccccchhheeccceeCCCCCccCcC-CEEech-HHHH
Confidence 23345568999999999993 34443 665555 4443
No 352
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.98 E-value=6.5e-08 Score=99.67 Aligned_cols=222 Identities=18% Similarity=0.257 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN--- 247 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G--- 247 (438)
+.++.+.++++...+-.. ...+ .++ ++||||+..|++.+|.+ .| +++|+.-..+ |-...-+...-|
T Consensus 108 ~~~la~~L~~~~p~~~~~-~~~v--~f~~~SGSEAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 108 KDQFVQDLFASLPEAFAR-EAKI--QFCGPTGTDAVEAALKLVKTA----TG--RSTVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred HHHHHHHHHHhCcccccc-cceE--EEeCCCcHHHHHHHHHHHHHh----hC--CCeEEEECCccCCccHHHHhhcCCcc
Confidence 344555666665322110 0012 454 79999999999999864 33 3567665554 443333332211
Q ss_pred -------c--EEEEeeCCCCCc------------cCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHH
Q 013675 248 -------I--KLWRVPVDKEFR------------ADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 248 -------i--~v~~v~~~~~~~------------~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
. .+..+|...+.+ .+++.+++.+.+ ++.+|++......-|.+.| ++++.
T Consensus 179 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr 258 (464)
T PRK06938 179 PKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLR 258 (464)
T ss_pred ccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHH
Confidence 1 244555432211 246778888863 4788888877776777654 88999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
++|++||+.+++|+++.||.. .|. -+.+...| .|+++++ |.+.+...+|.++.+++ + . .
T Consensus 259 ~lc~~~giLlI~DEV~tGfGR-----tG~---~~a~e~~gv~PDiv~~g--KglggG~PlsAv~~~~~-~-~-~------ 319 (464)
T PRK06938 259 RITEEAGIPLIVDEIQSGFGR-----TGK---MFAFEHAGIIPDVVVLS--KAIGGSLPLAVVVYREW-L-D-T------ 319 (464)
T ss_pred HHHHHcCCEEEEeccccCCCc-----CcH---HHHHHhcCCCCCEEEee--ccccCCCceEEEeehhH-h-h-c------
Confidence 999999999999999988743 111 11222233 3888885 77555566888888754 2 1 1
Q ss_pred cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+..+. ..++-.+.. .++..++|+.+.++ +..++..++.++|.+.|+++
T Consensus 320 ~~~~~-----~~~T~~gnpla~Aaa~a~L~~l~~~---~l~~~~~~~G~~l~~~L~~l 369 (464)
T PRK06938 320 WQPGA-----HAGTFRGNQMAMAAGSATLRYIKEH---RLAEHAAAMGERLREHLRQL 369 (464)
T ss_pred cCCCC-----CCCCCCcCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence 11110 111111211 33444555555433 44556666677777777653
No 353
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=98.98 E-value=1e-07 Score=97.27 Aligned_cols=170 Identities=19% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN--- 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G--- 247 (438)
...++.+.+++++..+..+ .+ .++++||||+..|++.+|.+ .| +++|+.-..+ |....-+....|
T Consensus 84 ~~~~la~~l~~~~p~~~~~---~v--~f~~SGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~ 152 (425)
T PRK07495 84 NYVRLAERLNALVPGDFAK---KT--IFVTTGAEAVENAVKIARAA----TG--RSAVIAFGGGFHGRTFMGMSLTGKVV 152 (425)
T ss_pred HHHHHHHHHHHhCCCCCCC---EE--EECCchHHHHHHHHHHHHHh----hC--CCeEEEECCCcCCccHHHhhhcCCCc
Confidence 4455667788877533211 25 89999999999999999865 33 3567765554 433222221111
Q ss_pred ----------cEEEEeeCCCC-Ccc----CHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHHHHHHcC
Q 013675 248 ----------IKLWRVPVDKE-FRA----DVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGELALSHG 303 (438)
Q Consensus 248 ----------i~v~~v~~~~~-~~~----d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~ 303 (438)
-.+..+|.+.+ ..+ +++++++.++ +++++|++.......|.+.+ +++|.++|++||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g 232 (425)
T PRK07495 153 PYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHG 232 (425)
T ss_pred ccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 13445555321 112 2455677764 34778887777666775533 889999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+++++|++++|+.. .|. .+.+...| .|++++ .|.+.++..+|+++.+++
T Consensus 233 ~llI~DEv~tG~gr-----~G~---~~a~~~~gv~pDi~tl--sK~l~~G~pigav~~~~~ 283 (425)
T PRK07495 233 ILLIADEVQTGFAR-----TGK---LFAMEHHEVAADLTTM--AKGLAGGFPLAAVTGRAE 283 (425)
T ss_pred CEEEEechhhcCCc-----CCC---ceeecccCCCCCEEee--hhhhcCCccceEEEEcHH
Confidence 99999999987643 121 12222223 376665 487655556788887643
No 354
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=98.97 E-value=7.8e-08 Score=98.08 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-- 248 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-- 248 (438)
...++.+.+++++..+.+. + .++++||||+..|++.+|.+... +|..+.+|+.-..+ |....-+....+-
T Consensus 87 ~~~~la~~L~~~~p~~~~~----v--~f~~SGsEAve~AlklAr~~~~~-~g~~r~kii~~~~~yHG~t~~a~s~~~~~~ 159 (428)
T PRK07986 87 PAIELCRKLVAMTPQPLEC----V--FLADSGSVAVEVAMKMALQYWQA-KGEPRQRFLTLRHGYHGDTFGAMSVCDPDN 159 (428)
T ss_pred HHHHHHHHHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEECCCcCCCcHhhhcccCCch
Confidence 3456667777776533232 5 89999999999999999976432 23335677766655 4332222222110
Q ss_pred -----------EEEEeeCCC-C----C-ccCHHHHHHhhc---cCcEEEEEecC-CCCCcccc----CHHHHHHHHHHcC
Q 013675 249 -----------KLWRVPVDK-E----F-RADVKAIKKYIN---RNTVLIVGSAP-GFPHGIID----PIQELGELALSHG 303 (438)
Q Consensus 249 -----------~v~~v~~~~-~----~-~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~id----di~~I~~la~~~~ 303 (438)
.+..+|... . + .-|++++++.++ +++.+|++... +...|.+. .+++|.++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g 239 (428)
T PRK07986 160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG 239 (428)
T ss_pred hhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 122333221 1 1 136678888885 35667777663 44456532 2899999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCcc
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~ 380 (438)
+++++|+++.|+.. .|. .+.....|+ |++++ .|.+.+. ..+|.++.+++ +.+... ...+ +...
T Consensus 240 ~lLI~DEv~tG~Gr-----tG~---~fa~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~-i~~~~~--~~~~-~~~~ 305 (428)
T PRK07986 240 ILLIADEIATGFGR-----TGK---LFACEHAGIAPDILCL--GKALTGGTMTLSATLTTRE-VAETIS--NGEA-GCFM 305 (428)
T ss_pred CEEEEeccccCCcc-----CCC---eeeecccCCCCCEEEe--chhhhCCcccCcchhchHH-HHHHhh--cCCC-Cccc
Confidence 99999999877632 221 122233343 78864 5775444 24566666543 322110 0000 0000
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
...+..|. ....++..++|+.+.++ +..++..++.+++.+.|+++
T Consensus 306 ~~~T~~g~--p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l 350 (428)
T PRK07986 306 HGPTFMGN--PLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPL 350 (428)
T ss_pred cCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11234555566655433 45667777788888877764
No 355
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=98.97 E-value=4.1e-08 Score=100.33 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC-----
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN----- 247 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G----- 247 (438)
.++.+.+++..+.+..+ .+ .++++|++|+..|++.++.+.. ++.|+.-..+ |....-+...-+
T Consensus 87 ~~la~~l~~~~~~~~~~---~~--~f~~sGsea~e~Alklar~~~~------r~~iv~~~~~yHG~~~~~~~~~~~~~~~ 155 (425)
T PRK08088 87 LELCEKMNQKVPGDFAK---KT--LLVTTGSEAVENAVKIARAATK------RSGVIAFTGAYHGRTHYTLALTGKVNPY 155 (425)
T ss_pred HHHHHHHHHhCCCCCCC---EE--EEeCCcHHHHHHHHHHHHHHhC------CCeEEEECCccCCccHHHHHhhCCCCcc
Confidence 36667777777644321 14 7899999999999999886521 1345554554 444333222211
Q ss_pred ---c-----EEEE--eeCCCCC-cc--CHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCe
Q 013675 248 ---I-----KLWR--VPVDKEF-RA--DVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTC 305 (438)
Q Consensus 248 ---i-----~v~~--v~~~~~~-~~--d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~ 305 (438)
. .+.. +|.+.++ .. ++++++++++ ++.++|++.......|.+.+ +++|.++|++||++
T Consensus 156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~ 235 (425)
T PRK08088 156 SAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIM 235 (425)
T ss_pred ccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 0 1112 2222221 11 1567888885 34677777766665566655 89999999999999
Q ss_pred EEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 306 lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+++|.+++++..+ |. ...++....-.|+. +..|.+.+...+|+++.+.+
T Consensus 236 lI~Dev~~g~g~~-----g~-~~~~~~~~~~pdi~--s~sK~l~~G~rig~v~~~~~ 284 (425)
T PRK08088 236 LIADEVQTGAGRT-----GT-LFAMEQMGVAADLT--TFAKSIAGGFPLAGVTGRAE 284 (425)
T ss_pred EEEeccccCCCcC-----cc-hhHHhhcCCCCCEE--EEeccccCCCcceeeEecHH
Confidence 9999999875321 11 00111111113544 44688655566898887543
No 356
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=98.96 E-value=9.1e-08 Score=98.40 Aligned_cols=221 Identities=22% Similarity=0.205 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN--- 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G--- 247 (438)
...++.+.+++++..+.+. + .|+++||||+..|++.+|.+ .| +++|+.-..+ |-....+....|
T Consensus 97 ~~~~lae~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~~ 164 (457)
T PRK05639 97 RAIRVAEKLAEISPIENPK----V--LFGLSGSDAVDMAIKVSKFS----TR--RPWILAFIGAYHGQTLGATSVAAFQS 164 (457)
T ss_pred HHHHHHHHHHhhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHHHcCCCc
Confidence 3445667788876543233 5 89999999999999999964 23 3567765554 443333332211
Q ss_pred -----c-----EEEEeeCCCCCc--------cCH--------HHHHHhh------ccCcEEEEEecCCCCCccccC----
Q 013675 248 -----I-----KLWRVPVDKEFR--------ADV--------KAIKKYI------NRNTVLIVGSAPGFPHGIIDP---- 291 (438)
Q Consensus 248 -----i-----~v~~v~~~~~~~--------~d~--------~~Le~~I------~~~t~~vv~~~~~~~tG~idd---- 291 (438)
. .++.+|.....+ -|. +.+++.+ .+++++|++.......|.+.|
T Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~y 244 (457)
T PRK05639 165 SQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENF 244 (457)
T ss_pred ccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHH
Confidence 1 244555432111 122 3456554 246889998888777787655
Q ss_pred HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccch
Q 013675 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQF 369 (438)
Q Consensus 292 i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~ 369 (438)
+++|.++|++||+++++|+++.||.. .|. .+.....| .|++++ .|.+.+..+.|+++.+++ +...
T Consensus 245 l~~l~~lc~~~g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~pi~av~~~~~-i~~~-- 311 (457)
T PRK05639 245 FKELKKLLDEHGILLVMDEVQTGIGR-----TGK---WFASEWFEVKPDLIIF--GKGVASGMGLSGVIGRKE-LMDL-- 311 (457)
T ss_pred HHHHHHHHHHcCCEEEEechhhccCc-----Cch---HHHHHhcCCCCCEEEe--chhhcCCCcceeEEehHH-HHhh--
Confidence 88999999999999999999887643 111 01111122 488885 588665677788887654 3321
Q ss_pred hcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 370 VAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 370 ~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
. .+.+. .+..| .|- ..++..++|+.+..+ +..++..++.++|++.|++
T Consensus 312 ~------~~~~~-~T~~g-~p~-~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~ 359 (457)
T PRK05639 312 T------SGSAL-LTPAA-NPV-ISAAAEATLEIIEEE---NLLKNALKVGEFIKKRLLE 359 (457)
T ss_pred c------CCCcc-cCCCc-CHH-HHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHH
Confidence 0 01110 11111 111 133444555555433 4456666677788777765
No 357
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=98.95 E-value=7.9e-10 Score=107.23 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC------cHHHHHhhcCc
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS------AYDKAAQYFNI 248 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~------s~~~a~~~~Gi 248 (438)
.+.+.++.++|+... +++++...|+++++.++. +| .+||++...-. .+....+.-|.
T Consensus 51 ~v~~ll~~ltgAeaA--------~VvNnnaAAv~L~l~~la------~~---~EvIvsRGelVeiGgsFRip~vm~~sGa 113 (367)
T PF03841_consen 51 HVEELLCELTGAEAA--------LVVNNNAAAVLLALNTLA------KG---KEVIVSRGELVEIGGSFRIPDVMRQSGA 113 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc--------cccccccccccccccccc------cc---cccccccccccccccccccccccccccc
Confidence 455678889988743 688888899999888775 34 57887766432 24556666788
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCC--ccc--cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcC
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPH--GII--DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLG 324 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~t--G~i--ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g 324 (438)
++++|-. +.+..+++++++|+++|.++.-.|++|.. |.. -+++++++++++|++++++|...|.+. ++ ...|
T Consensus 114 ~lvEVGt--tN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~-dl-~~~g 189 (367)
T PF03841_consen 114 RLVEVGT--TNRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLV-DL-SPYG 189 (367)
T ss_dssp -------------------------------------------------HHHHHHHHHT--EEEE-TTHHHH-HH-HTT-
T ss_pred ccccccc--ccccccccccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCc-Cc-cccc
Confidence 8887765 34667899999999999999988877752 222 369999999999999999998876543 21 2233
Q ss_pred CC-CC-CCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCC-chHHHHHHHH
Q 013675 325 YP-IP-PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPG-GLIAGAWAAL 401 (438)
Q Consensus 325 ~~-~p-~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~-~~ia~~~aal 401 (438)
.+ .| -.+....|+|.+++|+.|.+.+|. +|+++-|. ++...... .+ -...-|.+ ..++++.++|
T Consensus 190 l~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk-~lI~~lk~-~p----------l~RalrvdK~tla~L~atL 256 (367)
T PF03841_consen 190 LPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK-ELIEKLKK-HP----------LGRALRVDKLTLAALEATL 256 (367)
T ss_dssp ---------CCCCT-SEEEEETTSSSSS-S--EEEEEEH-HHHHHHHH-HH----------HTTT-B--HHHHHHHHHHH
T ss_pred CccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH-HHHHHHhh-CC----------CcceEeeCHHHHHHHHHHH
Confidence 21 11 134456789999999999987776 68876664 44332110 00 00111222 2367888888
Q ss_pred HHHcHH-----------HHHHHHHHHHHHHHHHHHHhhcC
Q 013675 402 MSLGQE-----------GYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 402 ~~~g~~-----------g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
+.|-.. -+.+..+.+.+.|+.+.+.|+..
T Consensus 257 ~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 257 RLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp HH--------------------------------------
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccc
Confidence 876421 12333445556677777766654
No 358
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.95 E-value=7.2e-08 Score=98.39 Aligned_cols=224 Identities=15% Similarity=0.141 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH----HHHhhcC
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD----KAAQYFN 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~----~a~~~~G 247 (438)
.+.++.+.++++++...+. + .|+++||||+..|++.+|.+ .| +++|+.-..+|..+. .+...-+
T Consensus 94 ~~~~la~~L~~~~~~~~~~----v--~f~~SGsEA~e~AiklAr~~----tg--r~~ii~~~~~yHG~td~~~~~~~~~~ 161 (433)
T PRK00615 94 QEILFAEELFSYLGLEDHK----I--RFVSSGTEATMTAVRLARGI----TG--RSIIIKFLGCYHGHADTLLQGISFSE 161 (433)
T ss_pred HHHHHHHHHHHhCCCCcCE----E--EEeCchHHHHHHHHHHHHHh----hC--CCEEEEEcCccCCCCcccCcccccCC
Confidence 4556677788877543233 5 89999999999999999975 23 356665554433321 1111111
Q ss_pred cE---EEE-e--e-CCCC----CccCHHHHHHhhc---cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEe
Q 013675 248 IK---LWR-V--P-VDKE----FRADVKAIKKYIN---RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVD 309 (438)
Q Consensus 248 i~---v~~-v--~-~~~~----~~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD 309 (438)
-. ... . + .... ..-|++++++.+. +++.+|++.......|.+.| +++|.++|++||+.+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~D 241 (433)
T PRK00615 162 TSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMD 241 (433)
T ss_pred CCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 00 000 0 0 0000 0127889998885 34678888887777788776 569999999999999999
Q ss_pred ccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccC
Q 013675 310 LCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAG 387 (438)
Q Consensus 310 ~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~g 387 (438)
+++.|+-. |. .+.....| .|++++ .|.+.+...+|+++.+++ +.+.... .+..+...+..|
T Consensus 242 Ev~tG~R~------G~---~ga~~~~gv~PDi~~~--gK~lggG~p~~av~~~~~-i~~~~~~-----~~~~~~~~T~~g 304 (433)
T PRK00615 242 EVVTGFRV------AQ---GGAAAIYHVKPDITVY--GKILGGGLPAAAVVAHKS-IMDHLAP-----EGTIFQAGTLSG 304 (433)
T ss_pred cccccccc------cH---hHHHHhcCCCCCeEEE--cccccCCcceeeeeecHH-HHhhhcC-----CCCcccCCCCcc
Confidence 99876511 10 01011112 477764 587544444677777644 3221100 011111111111
Q ss_pred CCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 388 SRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 388 sr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
. | ...++..++|+.+.++ +..++..++.+++.+.|++
T Consensus 305 ~-p-~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 305 N-P-LAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred c-H-HHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence 1 1 1244555666665433 3455666666666555543
No 359
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=98.95 E-value=1.2e-07 Score=97.54 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC-CcCcHHHHHhhcCc-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS-AHSAYDKAAQYFNI- 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~-~h~s~~~a~~~~Gi- 248 (438)
+...++.+.++++++.+.+. + .|+++||||+..|++.+|.+ .| +++|+.-.. .|.....+...-|-
T Consensus 113 ~~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~----tg--r~~ii~~~~~yHG~t~~a~s~~~~~ 180 (459)
T PRK06082 113 ETAIECAEKLTEIAGGELNR----V--LFAPGGTSAIGMALKLARHI----TG--NFKVVSLWDSFHGASLDAISVGGEA 180 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCE----E--EECCCcHHHHHHHHHHHHHh----cC--CCEEEEEeCCCcCccHHHHhhcCCc
Confidence 45566777788887543233 5 89999999999999999865 23 356665544 45444333332221
Q ss_pred -----------EEEEeeCCCCCc-----c------CHHHHHHhhc--cCcEEEEEecCCCCCccccC---HHHHHHHHHH
Q 013675 249 -----------KLWRVPVDKEFR-----A------DVKAIKKYIN--RNTVLIVGSAPGFPHGIIDP---IQELGELALS 301 (438)
Q Consensus 249 -----------~v~~v~~~~~~~-----~------d~~~Le~~I~--~~t~~vv~~~~~~~tG~idd---i~~I~~la~~ 301 (438)
.+..+|.....+ . +++++++.++ +++++|++.......+.+.| +++|.++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~ 260 (459)
T PRK06082 181 CFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDK 260 (459)
T ss_pred ccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHH
Confidence 133344221111 1 2356788875 35778888776654333444 8999999999
Q ss_pred cCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCC
Q 013675 302 HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGG 378 (438)
Q Consensus 302 ~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~ 378 (438)
||+.+++|++++|+.. .|. .+.+...| .|++++ .|.+.+.. .+|.++.+++ +... . .+.
T Consensus 261 ~g~llI~DEV~tG~GR-----tG~---~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~~~-i~~~--~-----~~~ 322 (459)
T PRK06082 261 HNVLLIIDEIPNGMGR-----TGE---WFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITKDK-YNTA--A-----QIS 322 (459)
T ss_pred cCCEEEEechhhCCCc-----cch---hhHhHhhCCCCCEEEe--cccccCCCCcceEEEEcHH-HHhh--c-----cCC
Confidence 9999999999987643 221 11222233 488875 58755542 5677777654 2211 0 011
Q ss_pred ccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 379 LYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 379 ~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.. . ++-.+.. .++..++|+.+.++ +..++..++.++|.+.|+++
T Consensus 323 -~~---~-~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 323 -LG---H-YTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEM 368 (459)
T ss_pred -CC---C-CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 00 1 1222222 33444556555333 46677777888888887654
No 360
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=98.94 E-value=5.4e-09 Score=95.40 Aligned_cols=206 Identities=21% Similarity=0.203 Sum_probs=138.8
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc--CcE
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR--NTV 275 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~--~t~ 275 (438)
.+.-|+.|.+.+.+++.+. +| +++|+...++|..+.-.+...+++++.+|.++++.+|++++.+.+.. .++
T Consensus 90 c~GvGsDE~ID~iiR~~c~-----PG--keKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK 162 (375)
T KOG0633|consen 90 CVGVGSDELIDLIIRCVCD-----PG--KEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK 162 (375)
T ss_pred EEecCcHHHHHHHHhheec-----CC--ccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence 6888999999999999885 66 46799999999888888888899999999999999999999998864 488
Q ss_pred EEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEE-eCCCCC-CCCCC
Q 013675 276 LIVGSAPGFPHGIIDPIQELGELALSH-GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSIS-VDVHKY-GLAPK 352 (438)
Q Consensus 276 ~vv~~~~~~~tG~iddi~~I~~la~~~-~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis-~s~hK~-~~~p~ 352 (438)
+++++.|+||||.+-..+.|.++.+-- |..++||+||-.|.- .+... ++--..+ ..++ -...|. |.++.
T Consensus 163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg-----~~S~~-~lV~kYp--NLivlqTlSKsfGLAGi 234 (375)
T KOG0633|consen 163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSG-----VESRM-KLVKKYP--NLIVLQTLSKSFGLAGI 234 (375)
T ss_pred EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeecc-----ccccc-hHhHhCC--ceeehhhhhhhcCccee
Confidence 999999999999998877777777643 688999999854321 00001 0100111 2222 233454 45555
Q ss_pred CcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHH---cHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 353 GTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSL---GQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 353 g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~---g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
..|+-++. ..+.+........|.- |- ++-.+||..+ ..+.++...+.+.+-..+|.+.|++
T Consensus 235 RvG~~~~~-~~ia~iln~~KaPYNi----------S~-----~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~ 298 (375)
T KOG0633|consen 235 RVGYGAFP-LSIAEILNRAKAPYNI----------SV-----AGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTE 298 (375)
T ss_pred Eeeccccc-HHHHHHHHhccCCccc----------cc-----hhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 56654433 3333222222222111 11 1222333333 2356777788888889999999999
Q ss_pred CCCcc
Q 013675 430 FPMFL 434 (438)
Q Consensus 430 ~~g~~ 434 (438)
+|++.
T Consensus 299 v~~~~ 303 (375)
T KOG0633|consen 299 VPFLN 303 (375)
T ss_pred Ccccc
Confidence 88764
No 361
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.94 E-value=1.1e-07 Score=97.07 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcC---
Q 013675 173 EAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFN--- 247 (438)
Q Consensus 173 e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~G--- 247 (438)
..++.+.++++.... .+. + .++++||||+..|++.+|.+ .| +++|+.-..+ |....-+...-|
T Consensus 78 ~~~la~~l~~~~p~~~~~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~~~~~~~~ 145 (420)
T TIGR00700 78 YVALAEKLNRIAPGSGPKK----S--VFFNSGAEAVENAVKIARSY----TG--RPGVVAFDHGFHGRTNMTMALTAKVM 145 (420)
T ss_pred HHHHHHHHHHhCCCCCCCE----E--EEeCCcHHHHHHHHHHHHHh----cC--CCcEEEECCCcCCCcHHHHHhcCCCc
Confidence 445666777776422 122 5 89999999999999999875 23 3567655554 444333332211
Q ss_pred -----c-----EEEEeeCCCCC-----------ccCHHHHHHhhc-----cCcEEEEEecCCCCCccccC----HHHHHH
Q 013675 248 -----I-----KLWRVPVDKEF-----------RADVKAIKKYIN-----RNTVLIVGSAPGFPHGIIDP----IQELGE 297 (438)
Q Consensus 248 -----i-----~v~~v~~~~~~-----------~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~idd----i~~I~~ 297 (438)
. .+..+|..... .-+++.+++.+. +++++|++......+|.+.| +++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~ 225 (420)
T TIGR00700 146 PYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLD 225 (420)
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 1 23334432111 112567777663 45789999888888888766 899999
Q ss_pred HHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 298 LALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 298 la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
+|++||+++++|+++.|+... |. .+.+... ..|+++ ..|.+.++..+|+++.+++
T Consensus 226 lc~~~gillI~DEV~tg~gr~-----g~---~~a~~~~~~~pDi~~--lsK~l~~G~pig~v~~~~~ 282 (420)
T TIGR00700 226 WCREHGIVFIADEVQTGFART-----GA---MFACEHEGPEPDLIT--TAKSLADGLPLSGVTGRAE 282 (420)
T ss_pred HHHHcCCEEEEEecccCCccc-----ch---hHHHhhcCCCCCEEE--eeccccCCcceEEEEecHH
Confidence 999999999999999887431 10 0111112 247666 4688665567888887643
No 362
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.92 E-value=1.6e-07 Score=95.96 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-CCCCeEEecCCC-cCcHHHHHhhcC--
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-ITRPEMIIPVSA-HSAYDKAAQYFN-- 247 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-~~~~~Viv~~~~-h~s~~~a~~~~G-- 247 (438)
...++.+.+++++..+.+. + .|+++||||+..|++.+|.+... +| ..+.+|+.-..+ |.....+...-|
T Consensus 88 ~~~~lae~L~~~~p~~~~~----v--~f~~sGseAve~AlklAr~~~~~-~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~ 160 (429)
T PRK06173 88 PAVELAQKLLEILPPSLNK----I--FFADSGSVAVEVAMKMALQYQQA-KGEVQRTKFATIRSGYHGDTWHAMSVCDPV 160 (429)
T ss_pred HHHHHHHHHHhhCCCCcCE----E--EEeCCchHHHHHHHHHHHHHHHH-hCCCCCcEEEEECCCcCCcchhhhccCCCc
Confidence 3456667777776432233 5 89999999999999999976433 23 124567666554 443222221111
Q ss_pred ----------c-EEEEeeCCCC------CccCHHHHHHhhc---cCcEEEEEecC-CCCCccccC----HHHHHHHHHHc
Q 013675 248 ----------I-KLWRVPVDKE------FRADVKAIKKYIN---RNTVLIVGSAP-GFPHGIIDP----IQELGELALSH 302 (438)
Q Consensus 248 ----------i-~v~~v~~~~~------~~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~ 302 (438)
. .+..+|.... ..-+++++++.+. +++.+|++... ....|.+.| ++++.++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~ 240 (429)
T PRK06173 161 TGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY 240 (429)
T ss_pred hhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence 0 1233443211 0124677888885 45788888874 666677643 88999999999
Q ss_pred CCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCc
Q 013675 303 GTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGL 379 (438)
Q Consensus 303 ~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~ 379 (438)
|+++++|+++.|+.. .|. -+.....| .|++++ .|.+.+. ..+|.++.+++ +.+.. . ....+..
T Consensus 241 g~llI~DEv~tG~Gr-----tG~---~~a~~~~gv~PDiv~~--gK~l~gG~~p~~a~~~~~~-i~~~~--~-~~~~~~~ 306 (429)
T PRK06173 241 GVLLIFDEIATGFGR-----TGK---LFALEHAGVVPDIMCI--GKALTGGYLTLSATITTEA-IAQTI--C-SGEAKCF 306 (429)
T ss_pred CCeEEecchhcCCCc-----CCc---chHHHhcCCCCCEEEe--ehhhhCCccccceEEecHH-HHHHH--h-cCCCCcc
Confidence 999999999876532 221 11112223 477774 5775444 24566666643 22110 0 0000000
Q ss_pred cCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 380 ~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+.|..|. ....++..++|+.+-++ +..++..++.++|.+.|+++
T Consensus 307 ~~~~T~~g~--p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~ 352 (429)
T PRK06173 307 MHGPTFMAN--PLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPA 352 (429)
T ss_pred ccCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence 011111111 12244556666665433 34667777888888888743
No 363
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=98.92 E-value=1.4e-07 Score=96.29 Aligned_cols=222 Identities=20% Similarity=0.164 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675 173 EAEVIAMTAALLGNK-EKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI-- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~-~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi-- 248 (438)
..++.+.+++++..+ .+. + .|+++||||+..|++.+|.+ .| +++|+.-..+ |....-+....|.
T Consensus 85 ~~~la~~l~~~~p~~~~~~----~--~f~~sGseA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~~~~s~t~~~~ 152 (421)
T PRK06777 85 YVTLAERINALAPIDGPAK----T--AFFTTGAEAVENAVKIARAY----TG--RPGVIAFGGAFHGRTLLTMALTGKVA 152 (421)
T ss_pred HHHHHHHHHHhCCCCCCce----E--EEeCCcHHHHHHHHHHHHHh----hC--CCeEEEEcCCcCCccHHHHhhcCCCc
Confidence 345666777776532 222 4 88999999999999999865 23 3567766554 4433333322221
Q ss_pred -----------EEEEeeCCCC-----CccCHHHHHHhhc-----cCcEEEEEecCCCCCccc-cC---HHHHHHHHHHcC
Q 013675 249 -----------KLWRVPVDKE-----FRADVKAIKKYIN-----RNTVLIVGSAPGFPHGII-DP---IQELGELALSHG 303 (438)
Q Consensus 249 -----------~v~~v~~~~~-----~~~d~~~Le~~I~-----~~t~~vv~~~~~~~tG~i-dd---i~~I~~la~~~~ 303 (438)
.+..+|.... ..-+++++++.++ +++.+|++.......|.. .| +++|.++|++||
T Consensus 153 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g 232 (421)
T PRK06777 153 PYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHG 232 (421)
T ss_pred ccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1223332211 1124677888775 347788888877777753 34 899999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccC
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYV 381 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 381 (438)
+++++|+++.|+.. .|. .+.....+ .|+++ ..|.+.+...+|+++.++ ++.+.... ...
T Consensus 233 ~llI~DEv~tg~gr-----~g~---~~~~~~~~~~pDiv~--~sK~l~~G~pigav~~~~-~i~~~~~~---~~~----- 293 (421)
T PRK06777 233 ILLIADEVQTGFAR-----TGK---LFAMEYYDVKPDLIT--MAKSLGGGMPISAVVGRA-EVMDAPAP---GGL----- 293 (421)
T ss_pred CEEEEechhhCCcc-----CCc---hhhhhhcCCCCCEEe--eehhhcCCCceEEEEEcH-HHHhccCC---CCC-----
Confidence 99999999987643 111 11111123 47665 468855545688888764 33221100 000
Q ss_pred CCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 382 SPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 382 ~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..+..|. + ...++..++|+.+.. .+..++..++.+++.+.|+++
T Consensus 294 ~~T~~~~-p-~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 294 GGTYAGN-P-LAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred CCCCCcC-H-HHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1 112344445544422 456677778888888888764
No 364
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=98.91 E-value=1.9e-07 Score=96.24 Aligned_cols=171 Identities=22% Similarity=0.195 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhcCc-
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYFNI- 248 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~Gi- 248 (438)
+.+.++.+.+++++..+..+ .+ .++++||||+..|++.+|.+. | +++|+.-..+ |....-+...-|-
T Consensus 97 ~~~~~la~~L~~~~p~~~~~---~v--~f~~sGseA~e~AlklAr~~t----g--r~~ii~~~~~yHG~t~~~ls~~~~~ 165 (451)
T PRK06918 97 EPYIELAEKLAALAPGSFDK---KV--LFLNSGAEAVENAVKIARKYT----K--RQGIISFSRGFHGRTLMTMTMTSKV 165 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCC---EE--EEcCCcHHHHHHHHHHHHHHh----C--CCcEEEECCCcCccchhhhhhcCCC
Confidence 44566777888887543211 15 899999999999999999752 2 3567665554 4333333322110
Q ss_pred ------------EEEEeeCCC-----CCcc-------CHHHHHHhh----c-cCcEEEEEecCCCCCccccC----HHHH
Q 013675 249 ------------KLWRVPVDK-----EFRA-------DVKAIKKYI----N-RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 249 ------------~v~~v~~~~-----~~~~-------d~~~Le~~I----~-~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
.+..+|... .+.. .++.+++.+ . +++.+|++...+...|.+.| +++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l 245 (451)
T PRK06918 166 KPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEV 245 (451)
T ss_pred ccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHH
Confidence 133343321 1100 022344433 2 35677777776665676544 7899
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
.++|++||++++.|+++.|+.. .|. .+.+...+ .|+++ ..|.+.+...+|+++.+++
T Consensus 246 ~~l~~~~gillI~DEV~tg~gr-----~g~---~~a~~~~~v~pDi~t--~sK~l~~G~pig~v~~~~~ 304 (451)
T PRK06918 246 RNICSEHGILFVADEIQTGFAR-----TGK---YFAIEHFDVVPDLIT--VSKSLGAGVPISGVIGRKE 304 (451)
T ss_pred HHHHHHcCCEEEEeccccCcCc-----cCc---eehhHhcCCCCCEEe--eehhhcCCCccEEEEEcHH
Confidence 9999999999999999988753 111 11112222 47554 4688665567899887643
No 365
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.91 E-value=5.1e-08 Score=99.66 Aligned_cols=224 Identities=19% Similarity=0.209 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc----
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF---- 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~---- 246 (438)
..+.++.+++++++.. .+. + .++++|++|+..|++.++.+ .| +++|+....+|......+...
T Consensus 90 ~~~~~la~~L~~~~~~-~~~----v--~~~~sGseA~e~Aik~a~~~----~g--~~~ii~~~~~yHG~t~~~~~~~~~~ 156 (426)
T PRK00062 90 ELEVELAELVIELVPS-IEM----V--RMVNSGTEATMSAIRLARGY----TG--RDKIIKFEGCYHGHADSLLVKAGSG 156 (426)
T ss_pred HHHHHHHHHHHHhCCC-CCE----E--EEecCHHHHHHHHHHHHHHH----hC--CCeEEEEcCccCCchhhhhhccCcc
Confidence 3445677777777632 223 5 89999999999999999865 22 367887777655543222111
Q ss_pred ----C-----cEEEEeeCC--CCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEE
Q 013675 247 ----N-----IKLWRVPVD--KEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHV 308 (438)
Q Consensus 247 ----G-----i~v~~v~~~--~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhV 308 (438)
+ ...+.++.+ .--.-|++++++.+.+ ++++|++.......|.+.| +++|.++|++||+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 236 (426)
T PRK00062 157 AATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIF 236 (426)
T ss_pred ccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 000001000 0001378999998853 6788888877777898887 99999999999999999
Q ss_pred eccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCcc
Q 013675 309 DLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVA 386 (438)
Q Consensus 309 D~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 386 (438)
|+++.|+-. ...+ .....+ .|++ +..|.+.+....|+++.++ ++.+..-. .+..+...+..
T Consensus 237 DEv~~G~r~---g~~~------~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~-~i~~~~~~-----~~~~~~~~T~~ 299 (426)
T PRK00062 237 DEVMTGFRV---ALGG------AQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRR-EIMEQLAP-----LGPVYQAGTLS 299 (426)
T ss_pred eechhcccc---CCcc------HHHHhCCCcchH--hhhhHhhCCCcceeeeEHH-HHHHhhcc-----CCCceecccCc
Confidence 999987622 0000 011112 2543 3458855444467766653 33221100 01111111111
Q ss_pred CCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 387 GSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 387 gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
+.. ...++..++|+.+..+ +..++..++.+++++.|++
T Consensus 300 ~~p--~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~ 337 (426)
T PRK00062 300 GNP--LAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKE 337 (426)
T ss_pred CCH--HHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHH
Confidence 111 1133455566555333 4556666667777666653
No 366
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.91 E-value=2.1e-07 Score=95.87 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHH-HHHhhcC-
Q 013675 171 RFEAEVIAMTAALLGNKE-KASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD-KAAQYFN- 247 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~-~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~-~a~~~~G- 247 (438)
+.+.++.+.+++++.... .. .+ -.++++||||+..|++.+|.+ .| +++|+.-..+|.... -+...-|
T Consensus 101 ~~~~~lAe~L~~~~p~~~~~~---~~-~f~~~SGsEAve~AlklAr~~----tg--r~~Ii~~~~~yHG~t~~als~t~~ 170 (459)
T PRK06931 101 PLKDAFSEYLLSLLPGQGKEY---CL-QFTGPSGADAVEAAIKLAKTY----TG--RSNVISFSGGYHGMTHGALAVTGN 170 (459)
T ss_pred HHHHHHHHHHHHhCCCccccc---eE-EEeCCCcHHHHHHHHHHHHHh----cC--CCeEEEECCCcCCccHHHHhhcCC
Confidence 455667778888875322 11 01 145689999999999999975 33 356776665544433 3332211
Q ss_pred -----------cEEEEeeCCCCCc--------cCHHHH----HHhhc------cCcEEEEEecCCCCCccccC----HHH
Q 013675 248 -----------IKLWRVPVDKEFR--------ADVKAI----KKYIN------RNTVLIVGSAPGFPHGIIDP----IQE 294 (438)
Q Consensus 248 -----------i~v~~v~~~~~~~--------~d~~~L----e~~I~------~~t~~vv~~~~~~~tG~idd----i~~ 294 (438)
-.+..+|.....+ -+.+++ ++.++ +++.+|++.......|.+.| +++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~ 250 (459)
T PRK06931 171 LSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQK 250 (459)
T ss_pred cccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHH
Confidence 1234444332111 123333 33333 24788888877776777654 899
Q ss_pred HHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEec
Q 013675 295 LGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRN 361 (438)
Q Consensus 295 I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~ 361 (438)
+.++|++||+++++|+++.||.. .|. .+.+...| .|+++++ |.+.++..+|+++.++
T Consensus 251 lr~lc~~~g~LlI~DEV~tGfGR-----tG~---~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~ 309 (459)
T PRK06931 251 IREVTQKHGILLIVDEVQAGFAR-----TGK---MFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKK 309 (459)
T ss_pred HHHHHHHcCCEEEEecchhcCCc-----Cch---HHHhhhcCCCCCEEEec--ccccCCcceeeeeeHH
Confidence 99999999999999999988743 121 12222233 3888885 7755556677777664
No 367
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=98.90 E-value=6.7e-08 Score=93.20 Aligned_cols=221 Identities=15% Similarity=0.105 Sum_probs=139.6
Q ss_pred HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+.+.+++|-+-+.. ++-++.--||...+..+... -+| -+|+-.+..|.|.....+.-+++-....-
T Consensus 221 LE~eLA~LHqK~aA--------LlFsSCfVANDstLftLak~---lpg---cei~SD~gNHASMI~GIrns~v~K~IFrH 286 (570)
T KOG1360|consen 221 LEAELADLHQKEAA--------LLFSSCFVANDSTLFTLAKK---LPG---CEIFSDEGNHASMIQGIRNSRVPKHIFRH 286 (570)
T ss_pred HHHHHHHHhcCcce--------eeeeeeeeccchHHHHHHHH---CCC---cEEeccccchHHHHHHhhhcCCcceeecc
Confidence 33457887765543 33344445555555444321 255 67777777899988877777765444433
Q ss_pred CCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc
Q 013675 256 DKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD 331 (438)
Q Consensus 256 ~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~ 331 (438)
+ |+++|++++.. -|+.|.+....+..|.+.|+++|++++++||....+|++++-++. -..|..+-+-|
T Consensus 287 N-----D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlY---G~rGaGvgerd 358 (570)
T KOG1360|consen 287 N-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY---GPRGAGVGERD 358 (570)
T ss_pred C-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc---cCCCCCccccC
Confidence 3 89999999864 378999999999999999999999999999999999999754433 11221122333
Q ss_pred cCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHc-HHHHH
Q 013675 332 FSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLG-QEGYL 410 (438)
Q Consensus 332 ~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g-~~g~~ 410 (438)
--...+|+|+....|. ||--| |++... ..+..... .|..|.. +..|-|-..++++..+.+.+. .+| +
T Consensus 359 Gvm~kvDiIsGTLgKa-fGcVG-GYIAat-~~LvDmiR----SyAaGFI----FTTSLPP~vl~GAleaVr~lk~~eg-~ 426 (570)
T KOG1360|consen 359 GVMHKVDIISGTLGKA-FGCVG-GYIAAT-RKLVDMIR----SYAAGFI----FTTSLPPMVLAGALEAVRILKSEEG-R 426 (570)
T ss_pred Ccchhhhhcccchhhh-ccccc-ceehhh-hhHHHHHH----HhcCceE----EecCCChHHHHhHHHHHHHHhhhhh-H
Confidence 3344469999999999 55544 554443 22222110 1111111 112334445667778887774 344 4
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 013675 411 ENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 411 ~~~~~~~~~a~~l~~~L~~~ 430 (438)
...+...++.+++++.|.++
T Consensus 427 ~lR~~hqrnv~~~kq~l~~~ 446 (570)
T KOG1360|consen 427 VLRRQHQRNVKYVKQLLMEL 446 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44555667788888888775
No 368
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=98.89 E-value=3.3e-08 Score=92.29 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecC----CCcCcHHHHHhhcCc
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV----SAHSAYDKAAQYFNI 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~----~~h~s~~~a~~~~Gi 248 (438)
.+-+...++.+.|+...+ + .+.++-|.-+...+.+... +-.++-+|+... +.|+++...++..|+
T Consensus 113 De~il~l~~~iVGA~e~E----v--avmNsLTvNlh~Ll~sFyK-----PTekR~KILlE~kaFPSDhYAiesQ~~lhG~ 181 (465)
T KOG3846|consen 113 DEPILPLLAPIVGAQENE----V--AVMNSLTVNLHSLLISFYK-----PTEKRFKILLEKKAFPSDHYAIESQCKLHGI 181 (465)
T ss_pred chhhhhhhhhhccCCchh----h--hhHhhhhhHHHHHHHHhcC-----CcchhhhhhhccCCCCchHHHHHhhhhhcCC
Confidence 445667788999998877 4 4555555444444444331 222234566543 457789999999998
Q ss_pred E----EEEeeCCC-CCccCHHHHHHhhccC---cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 249 K----LWRVPVDK-EFRADVKAIKKYINRN---TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 249 ~----v~~v~~~~-~~~~d~~~Le~~I~~~---t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
. .+.+...+ ...+..+++-..|..+ .++|+++..++.||...|+.+|...-+..|+.+-.|-|++
T Consensus 182 ~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHA------- 254 (465)
T KOG3846|consen 182 SPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHA------- 254 (465)
T ss_pred ChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhh-------
Confidence 5 44454444 4457788888888754 6788999999999999999999988888899999998864
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCC-CCcEEEEEecccccccchhcccccCCCcc-----------CCCCccCC
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAP-KGTSVVLYRNREIRKHQFVAVTEWSGGLY-----------VSPTVAGS 388 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~~~g~~~-----------~~~~~~gs 388 (438)
.|. + |+....+|||+.++.++||++++ .|+|.+.+.++. .+.+......|.|... ..+...|-
T Consensus 255 --vgN-V-pL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh-~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~Gf 329 (465)
T KOG3846|consen 255 --VGN-V-PLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKH-TKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGF 329 (465)
T ss_pred --hcC-C-ceEEeecCCceEEEeeecccccCCCccceeeeehhh-hcchhhHHhhhccCCcchhhhhccccccCcccccc
Confidence 333 3 46778899999999999999755 457777776553 3333344445655432 12233444
Q ss_pred CC----CchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013675 389 RP----GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433 (438)
Q Consensus 389 r~----~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 433 (438)
|- -..++++..+|+.+.+-.+.+..++..-++.|+...++...|.
T Consensus 330 RiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~ 378 (465)
T KOG3846|consen 330 RISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGY 378 (465)
T ss_pred ccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhccc
Confidence 42 2346788888988888889999999999999999888765443
No 369
>PRK07046 aminotransferase; Validated
Probab=98.89 E-value=3.2e-07 Score=94.27 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcH-HHHHhh----
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQY---- 245 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~-~~a~~~---- 245 (438)
+.+.++.+.++++++.+ . + .|+++||||+..|++.+|.+ .| +++|+.-..+|..+ ......
T Consensus 115 ~~~~~lAe~l~~~~~~~--~----v--~F~nSGtEA~e~AlrlAR~~----TG--r~~ii~~~g~YHG~~d~~l~~~~~~ 180 (453)
T PRK07046 115 EDAAWVGEELARRFGLP--Y----W--QVATTATDANRFVLRWARAV----TG--RPKILVFNGCYHGTVDDVFVDLVDG 180 (453)
T ss_pred HHHHHHHHHHHHHhCCC--E----E--EEECCHHHHHHHHHHHHHHh----hC--CCEEEEECCCCCCCcHHhHhhccCC
Confidence 55677788888888543 2 5 89999999999999999975 23 36677655544333 211111
Q ss_pred --------cCc------EEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeE
Q 013675 246 --------FNI------KLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCL 306 (438)
Q Consensus 246 --------~Gi------~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~l 306 (438)
.|+ .+..+|. -|++++++.+. ++..+|++.......|.+.| ++++.++|++||+.+
T Consensus 181 ~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~ll 255 (453)
T PRK07046 181 RPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLL 255 (453)
T ss_pred CCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEE
Confidence 011 1122222 27899999985 46788888887777787765 799999999999999
Q ss_pred EEecccc---chhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecc
Q 013675 307 HVDLCLG---GFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362 (438)
Q Consensus 307 hVD~a~g---g~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~ 362 (438)
++|+++. |+.- +.+. ++ ...|.+++ -|.+.++..+|+++.+++
T Consensus 256 I~DEV~tfr~g~Gg-~~~~-------~g---v~PDi~t~--gK~lggG~Pi~av~g~~~ 301 (453)
T PRK07046 256 VIDETHTISSGPGG-YTRA-------HG---LEPDFLVV--GKPIAGGVPCAVYGFSAE 301 (453)
T ss_pred EEEccccCccCCcc-hhHH-------hC---CCccceee--hhhhcCCCcceeeeehHH
Confidence 9999975 2111 0010 11 11388775 587655567888777654
No 370
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.86 E-value=1.8e-07 Score=90.96 Aligned_cols=213 Identities=20% Similarity=0.153 Sum_probs=131.7
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEEeeCCC---C----CccCHHHHHHh
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWRVPVDK---E----FRADVKAIKKY 269 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~v~~~~---~----~~~d~~~Le~~ 269 (438)
.|+++|||||..|++.+|.....+.+..+-.+|.- ...|..-..++...+..-...|.++ + ---|..++++.
T Consensus 120 ff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~ 199 (433)
T KOG1401|consen 120 FFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKL 199 (433)
T ss_pred EEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHH
Confidence 89999999999999999976554433223335554 4456555555554343333333221 1 12379999999
Q ss_pred hccCc---EEEEEecCCCCCcccc--C--HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEE
Q 013675 270 INRNT---VLIVGSAPGFPHGIID--P--IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSI 340 (438)
Q Consensus 270 I~~~t---~~vv~~~~~~~tG~id--d--i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsi 340 (438)
++... .+|++...+-.-|.+. | +..|.++|+++|++++-|+++.|+.. .|. .+.....++ |+.
T Consensus 200 ~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR-----~g~---~~a~e~~~~~PDI~ 271 (433)
T KOG1401|consen 200 FESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGR-----LGY---GWAQEYFGVTPDIT 271 (433)
T ss_pred HHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccc-----cch---HHHHHHhCcCCcce
Confidence 98754 7888888887666653 3 78999999999999999999987653 221 223333344 777
Q ss_pred EeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHH---HHHHHHHcH-HHHHHHHHHH
Q 013675 341 SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA---WAALMSLGQ-EGYLENTKAI 416 (438)
Q Consensus 341 s~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~---~aal~~~g~-~g~~~~~~~~ 416 (438)
++. |.+.++...|+..+|++-..... ++ .+...|+..++...+| ..+|+.+.+ +.+.++.+.-
T Consensus 272 t~a--K~L~gGlPigA~~v~~kV~~~i~--------~~---~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~ 338 (433)
T KOG1401|consen 272 TVA--KPLGGGLPIGATGVRDKVAEMIS--------PG---DHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIG 338 (433)
T ss_pred eeh--hhccCCceeEEEeehHHHHhhcC--------CC---CccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHH
Confidence 765 88777788899888876322111 11 1122233322222233 344555544 4456666666
Q ss_pred HHHHHHHHHHhhcCC
Q 013675 417 MEVSESIQKGLVLFP 431 (438)
Q Consensus 417 ~~~a~~l~~~L~~~~ 431 (438)
..+++.+.+.+.+-|
T Consensus 339 k~L~~~l~e~~~~~~ 353 (433)
T KOG1401|consen 339 KELRKLLDEYLKKTP 353 (433)
T ss_pred HHHHHHHHHHhccCC
Confidence 778888888877644
No 371
>PRK06149 hypothetical protein; Provisional
Probab=98.83 E-value=4.4e-07 Score=101.68 Aligned_cols=224 Identities=21% Similarity=0.178 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhh----
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQY---- 245 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~---- 245 (438)
+...++.+.+++++..+.+. + .++++||||+..|++.+|.+ .| +.+||....+ |....-+...
T Consensus 624 ~~~~elae~L~~~~p~~~~~----v--~f~~SGsEA~e~AlklAr~~----tg--r~~ii~~~~~yHG~t~ga~~~s~~~ 691 (972)
T PRK06149 624 AAVAEFSERLAALAPDGLDT----V--FLVNSGSEANDLAIRLAWAA----SG--RRDVVSVLEAYHGWTVATDAVSTSI 691 (972)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCchHHHHHHHHHHHHh----cC--CCeEEEEeCCCCCcChhHhhhcCCc
Confidence 34556667788887332222 4 89999999999999999865 23 3456665554 4322111111
Q ss_pred ------cCc---EEEEeeCCCC----Cc-cC-----HHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHHH
Q 013675 246 ------FNI---KLWRVPVDKE----FR-AD-----VKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQELG 296 (438)
Q Consensus 246 ------~Gi---~v~~v~~~~~----~~-~d-----~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I~ 296 (438)
.+- .+..++.... +. .| .+++++.+. +++++|++.......|.+.+ +++|.
T Consensus 692 ~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~ 771 (972)
T PRK06149 692 ADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVY 771 (972)
T ss_pred cccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHH
Confidence 000 1233433221 11 12 244444442 35778888887777788877 99999
Q ss_pred HHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCC--ccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccc
Q 013675 297 ELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQG--VTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374 (438)
Q Consensus 297 ~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~g--vdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~ 374 (438)
++|++||+.+++|+++.||.. .|.. -+.+...| .|++++ .|.+.++..+|+++.+++ +.+. +. .
T Consensus 772 ~lc~~~g~llI~DEV~tGfGR-----tG~~--~~a~e~~gv~PDivt~--gK~lg~G~Pl~av~~~~~-i~~~-~~-~-- 837 (972)
T PRK06149 772 AAVRARGGVCIADEVQVGYGR-----LGHY--FWGFEQQGVVPDIITM--AKGMGNGHPLGAVITRRE-IAEA-LE-A-- 837 (972)
T ss_pred HHHHHcCCEEEEEeehhcCCc-----cCcc--chhhhhcCCCCCEEEe--cccccCCeeeEEEEEcHH-HHhh-hc-c--
Confidence 999999999999999977643 2210 01222233 488876 477655566788888754 2211 00 0
Q ss_pred cCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 375 WSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 375 ~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.+.+. ++-.+.. .++..++|+.+.++ +..++..++.++|++.|+++
T Consensus 838 --~~~~~-----sT~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~~L~~l 885 (972)
T PRK06149 838 --EGYFF-----SSTGGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKARLEAL 885 (972)
T ss_pred --CCccc-----CCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 01110 1111211 23344445444333 45566767777777777653
No 372
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.81 E-value=8.5e-08 Score=91.48 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=112.1
Q ss_pred HHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHH-HhhcCcEEEEee
Q 013675 176 VIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKA-AQYFNIKLWRVP 254 (438)
Q Consensus 176 ~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a-~~~~Gi~v~~v~ 254 (438)
+.+.+.+.||.+.. +-|.-|..|-....-.++......+| .++++++..|+...++ .+..|..++-++
T Consensus 84 L~~avkdifGfq~~--------iPthQGRgAE~Il~~i~ik~~~~~pg---~~~~~~sN~~FdTTr~h~~~ng~~~~n~~ 152 (471)
T COG3033 84 LADAVKDIFGFQYT--------IPTHQGRGAENILIPILIKKGEQEPG---SKMVAFSNYHFDTTRGHIQINGATPRNVY 152 (471)
T ss_pred HHHHHHHhcCceee--------eeccCCccHHHHHHHHHhhhccccCC---ccccccccceecchhHHHHhcCCcccccc
Confidence 34456777787542 45655555544444444433233455 5778888888876553 455577777777
Q ss_pred CCC----------CCccCHHHHHHhhcc----CcEEEEEecCCCCCc----cccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 255 VDK----------EFRADVKAIKKYINR----NTVLIVGSAPGFPHG----IIDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 255 ~~~----------~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG----~iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+++ .|.+|++.|++.|++ |...|+++--+|..| .+.+++++.++|++|+|+++.|+|-
T Consensus 153 ~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R---- 228 (471)
T COG3033 153 VDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR---- 228 (471)
T ss_pred ccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh----
Confidence 653 366999999999985 455565555555444 3477999999999999999999984
Q ss_pred hhhhhhcCCCCC--CCccCCC-----------CccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675 317 LPFAKKLGYPIP--PFDFSVQ-----------GVTSISVDVHKYGLAPKGTSVVLYRNREI 364 (438)
Q Consensus 317 ~pf~~~~g~~~p--~~~~~~~-----------gvdsis~s~hK~~~~p~g~g~l~~r~~~~ 364 (438)
|.+.+-+ +. +-..+.+ -+|-+++|..|-+.++.| |+++++|+..
T Consensus 229 --faENaYF-Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~ 285 (471)
T COG3033 229 --FAENAYF-IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSF 285 (471)
T ss_pred --hhhhhhh-hhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccH
Confidence 2222211 10 1111222 249999999999999997 8999998853
No 373
>PRK06148 hypothetical protein; Provisional
Probab=98.81 E-value=3.2e-07 Score=102.91 Aligned_cols=224 Identities=19% Similarity=0.174 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-cCcHHHHHhhc---
Q 013675 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-HSAYDKAAQYF--- 246 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-h~s~~~a~~~~--- 246 (438)
+.+.++.+.+++++..+.+. + .|+++||||+..|++.+|.+ .| +++||....+ |.....+...-
T Consensus 663 ~~~~~lAe~L~~~~p~~~~~----v--~f~nSGsEA~e~AlklAr~~----tG--r~~ii~~~~~YHG~t~~a~s~s~~~ 730 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGLTV----A--FFVNSGSEANSLALRLARAH----TG--QRDAIVLDHAYHGTTTELIDLSPYK 730 (1013)
T ss_pred HHHHHHHHHHHHhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHh----cC--CCeEEEEcCCccCCCcchhhcCchh
Confidence 34556777788877533232 4 89999999999999999975 33 3567665554 43322222111
Q ss_pred -----C----cEEEEeeCCCC----Cc-cC-------HHHHHHhhc------cCcEEEEEecCCCCCccccC----HHHH
Q 013675 247 -----N----IKLWRVPVDKE----FR-AD-------VKAIKKYIN------RNTVLIVGSAPGFPHGIIDP----IQEL 295 (438)
Q Consensus 247 -----G----i~v~~v~~~~~----~~-~d-------~~~Le~~I~------~~t~~vv~~~~~~~tG~idd----i~~I 295 (438)
+ -.+..++.... +. -| .+++++.+. +++++|++......-|.+.| ++++
T Consensus 731 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~l 810 (1013)
T PRK06148 731 FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREV 810 (1013)
T ss_pred hcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHH
Confidence 1 01222222110 11 11 244555553 35788888887777787766 8999
Q ss_pred HHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhccc
Q 013675 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373 (438)
Q Consensus 296 ~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~ 373 (438)
.++|++||+.++.|+++.||.. .|.. -+.+...|+ |++++ -|.+.++..+|.++.+++ +... +.
T Consensus 811 r~lc~~~g~llI~DEVqtGfGR-----tG~~--~~a~e~~gv~PDivt~--gK~lggG~Plgav~~~~e-i~~~-~~--- 876 (1013)
T PRK06148 811 YAMVRAAGGVCIADEVQVGFGR-----VGSH--WWAFETQGVVPDIVTM--GKPIGNGHPMGAVVTTRE-IADS-FD--- 876 (1013)
T ss_pred HHHHHHhCCEEEEEecccCCCC-----CCCc--chhhhhcCCCcceeee--cccccCCcceEEEEEcHH-HHhh-cc---
Confidence 9999999999999999987743 1210 122233344 88887 487666677888888743 3211 00
Q ss_pred ccCCCccCCCCccCCCCCch--HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 374 EWSGGLYVSPTVAGSRPGGL--IAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 374 ~~~g~~~~~~~~~gsr~~~~--ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.+..+ .+|-.|.. .++..++|+.+.++ +..++..++.++|++.|+++
T Consensus 877 --~g~~~-----~~Tf~gnpla~aaa~a~L~~i~~e---~l~~~~~~~G~~l~~~L~~l 925 (1013)
T PRK06148 877 --NGMEY-----FNTFGGNPVSCAIGLAVLDIIEDE---DLQRNALEIGNYLLAGLREL 925 (1013)
T ss_pred --CCCcc-----ccCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHH
Confidence 11101 11111221 23344445444333 45566777777877777653
No 374
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.80 E-value=1.3e-06 Score=89.76 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHh-c--------------------CCCCC
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNK-R--------------------GITRP 227 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~-~--------------------G~~~~ 227 (438)
..++.+.+.+.+++++.-+.+. + .|+++||||+..|++.+|.+.... + |-++.
T Consensus 103 ~~~la~~l~~~l~~~~p~~~~~----v--~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~ 176 (464)
T TIGR00699 103 SKDWAKILKEGILKVAPKGQDQ----V--WTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDL 176 (464)
T ss_pred HHHHHHHHHHhHHhhCCCCcCE----E--EEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCC
Confidence 3445555555455665422233 5 899999999999999998764321 1 11123
Q ss_pred eEEecCCC-cCcHHHHHhhcCc-----------EEEEeeCCC-C-------------CccCHHHHHHhhc---cCcEEEE
Q 013675 228 EMIIPVSA-HSAYDKAAQYFNI-----------KLWRVPVDK-E-------------FRADVKAIKKYIN---RNTVLIV 278 (438)
Q Consensus 228 ~Viv~~~~-h~s~~~a~~~~Gi-----------~v~~v~~~~-~-------------~~~d~~~Le~~I~---~~t~~vv 278 (438)
+||.-..+ |-...-+....|- ....+|... . ..-++++++++++ +++.+|+
T Consensus 177 ~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI 256 (464)
T TIGR00699 177 SILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAII 256 (464)
T ss_pred EEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67766555 4444433333221 122233221 0 0124667788885 3578999
Q ss_pred EecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchh
Q 013675 279 GSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 279 ~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
+.......|.+.| +++|.++|++||+.+++|+++.|+.
T Consensus 257 ~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfG 298 (464)
T TIGR00699 257 VEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVG 298 (464)
T ss_pred EeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCC
Confidence 9888887888877 9999999999999999999988764
No 375
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.79 E-value=1.1e-06 Score=89.70 Aligned_cols=232 Identities=16% Similarity=0.160 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCC-cCcHHHHHhhcCc--
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI-TRPEMIIPVSA-HSAYDKAAQYFNI-- 248 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~-~~~~Viv~~~~-h~s~~~a~~~~Gi-- 248 (438)
..++.+.++++++.+-+. + .++.+||+|+..|++.++.+... +|. .+.+|+.-..+ |....-+....|-
T Consensus 90 ~~~la~~l~~~~~~~~~~----v--~f~~sGseA~e~AlklAr~~~~~-~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~ 162 (427)
T TIGR00508 90 AIELCQKLVKMTPNALDC----V--FLADSGSVAVEVALKMALQYWQA-KGEKNRQKFLTIRSGYHGDTFGAMSVCDPEN 162 (427)
T ss_pred HHHHHHHHHhhCCCCCCE----E--EEeCCcHHHHHHHHHHHHHHHHh-hCCCCccEEEEEcCCcCCccHhhhcccCCcc
Confidence 345666777776543233 5 89999999999999999976533 232 13566665554 4433222222121
Q ss_pred -----------EEEEeeCCCC-C-----ccCHHHHHHhhc---cCcEEEEEecC-CCCCccc----cCHHHHHHHHHHcC
Q 013675 249 -----------KLWRVPVDKE-F-----RADVKAIKKYIN---RNTVLIVGSAP-GFPHGII----DPIQELGELALSHG 303 (438)
Q Consensus 249 -----------~v~~v~~~~~-~-----~~d~~~Le~~I~---~~t~~vv~~~~-~~~tG~i----ddi~~I~~la~~~~ 303 (438)
....+|.... + .-|++++++.+. ++.++|++... +...|.+ .++++|.++|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~ 242 (427)
T TIGR00508 163 SMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYD 242 (427)
T ss_pred cccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 1112222111 1 125678888875 34667777764 4444543 45899999999999
Q ss_pred CeEEEeccccchhhhhhhhcCCCCCCCccCCC--CccEEEeCCCCCCCCCC-CcEEEEEecccccccchhcccccCCCcc
Q 013675 304 TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQ--GVTSISVDVHKYGLAPK-GTSVVLYRNREIRKHQFVAVTEWSGGLY 380 (438)
Q Consensus 304 i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~--gvdsis~s~hK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~~~g~~~ 380 (438)
+.+++|+++.|+.. .|. .+..... ..|++++ .|.+.+.. .++.++.+++ +.+. +.... .+...
T Consensus 243 ~llI~DEv~tG~Gr-----~G~---~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~~~~-~~~~-~~~~~--~~~~~ 308 (427)
T TIGR00508 243 ILLIADEIATGFGR-----TGK---LFACEHAGVVPDILCV--GKALTGGYMTLSATVTTDK-VAQT-ISSGE--AGCFM 308 (427)
T ss_pred CEEEEeccccCCCc-----CCc---cchhhhcCCCCCEEEe--chhhhcCcccceEEEEcHH-HHHH-HhcCC--CCccc
Confidence 99999999876533 111 1111112 2477775 68754442 4566666543 2211 00000 00000
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 381 ~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
...+..|. ....+++.++++.+..+ +..++..++.++|++.|+++
T Consensus 309 ~~~T~~g~--p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l 353 (427)
T TIGR00508 309 HGPTFMGN--PLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPL 353 (427)
T ss_pred cCCCCCcC--HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHh
Confidence 11111121 11234555666655333 44677778888888888765
No 376
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=98.76 E-value=1.3e-07 Score=91.24 Aligned_cols=221 Identities=18% Similarity=0.157 Sum_probs=129.7
Q ss_pred HHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHhhcCcEEEEe
Q 013675 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQYFNIKLWRV 253 (438)
Q Consensus 175 ~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~~~Gi~v~~v 253 (438)
++.+.+++++-.+-.. + .|+++|||||.+|++.+|.+... -++|.- ...|....-++..-|+...+-
T Consensus 96 ~~Ae~L~s~~P~~l~~----v--fF~nsGsEANelal~mar~Yt~~------~diIa~r~~YHG~t~~t~glt~~~~~k~ 163 (442)
T KOG1404|consen 96 DLAEALVSKLPGDLKV----V--FFVNSGSEANELALKMARLYTGN------LDIIARRNSYHGNTLYTLGLTGLSPWKQ 163 (442)
T ss_pred HHHHHHHHhCCCCceE----E--EEecCCchHHHHHHHHHHHhcCC------ceEEEeeccccCCchhhcccccCCcccc
Confidence 3444566666554442 4 89999999999999999976432 245544 444555444444444432222
Q ss_pred eC-------------CC-C--Cc---------cCHHHHHHhhc----cCcEEEEEecCCCCCccccC----HHHHHHHHH
Q 013675 254 PV-------------DK-E--FR---------ADVKAIKKYIN----RNTVLIVGSAPGFPHGIIDP----IQELGELAL 300 (438)
Q Consensus 254 ~~-------------~~-~--~~---------~d~~~Le~~I~----~~t~~vv~~~~~~~tG~idd----i~~I~~la~ 300 (438)
+. |+ . +. --.++++..|. +...++++......-|.+.+ +++..++|+
T Consensus 164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~ 243 (442)
T KOG1404|consen 164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR 243 (442)
T ss_pred cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence 11 11 0 00 01134444443 23578888888887888876 889999999
Q ss_pred HcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCC
Q 013675 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGG 378 (438)
Q Consensus 301 ~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~ 378 (438)
++|..++.|+++.||.. .|. -+.|...++ |++++. |.+......|.+++.. ++......... .
T Consensus 244 k~Ggl~IaDEVqtGfGR-----tG~---~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~-EIa~v~~~~~~--~-- 308 (442)
T KOG1404|consen 244 KRGGLFIADEVQTGFGR-----TGH---MWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTP-EIADVLNQKSS--H-- 308 (442)
T ss_pred HcCCEEEehhhhhcccc-----ccc---cccccccCCCccHHHHH--hhccCCCcceeeecCH-HHHHHHHhccc--c--
Confidence 99999999999998764 343 344555555 777665 7765557778877764 33321111100 0
Q ss_pred ccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 379 LYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 379 ~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
....|..|- ++.+++..+..-.-+++.++..+...||.+.|.++
T Consensus 309 ----fnTyggnP~----a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l 352 (442)
T KOG1404|consen 309 ----FNTYGGNPV----ACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAAL 352 (442)
T ss_pred ----ccccCCCch----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 011112221 22333333333333566778888899999998765
No 377
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.73 E-value=8.7e-07 Score=90.68 Aligned_cols=221 Identities=13% Similarity=0.087 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcCcHHHHHh-----h
Q 013675 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHSAYDKAAQ-----Y 245 (438)
Q Consensus 172 ~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~s~~~a~~-----~ 245 (438)
.+.++.+.+++++... +. + .|+++||||+..|++.+|.+ .| +.+|+.. ...+.++..... .
T Consensus 89 ~~~~la~~l~~~~p~~-~~----v--~f~~sGseA~e~AlklAr~~----tg--r~~i~~~~~~~~h~~~~~~~g~~~~~ 155 (431)
T PRK06209 89 IELDAAESFLELIDGA-DM----V--KFCKNGSDATSAAVRLARAY----TG--RDLVARCADHPFFSTDDWFIGTTPMS 155 (431)
T ss_pred HHHHHHHHHHHhCCcc-ce----E--EEecCHHHHHHHHHHHHHHH----hC--CCeEEEeccCccccccccccccCCCC
Confidence 3446677788876421 22 5 89999999999999999975 23 2456544 122111111000 0
Q ss_pred cCcE------EEEeeCCCCCccCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchh
Q 013675 246 FNIK------LWRVPVDKEFRADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 246 ~Gi~------v~~v~~~~~~~~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
.|.. +..++ .-|+++++++++. ++.+|++.......+..+.+++|.++|++||+.+++|+++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~ 230 (431)
T PRK06209 156 AGIPASVSALTVTFR-----YNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFR 230 (431)
T ss_pred CCCChhHhccccccC-----CCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCC
Confidence 0110 11111 1278999998853 46677665543322223348999999999999999999987764
Q ss_pred hhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccC-CCCC--c
Q 013675 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAG-SRPG--G 392 (438)
Q Consensus 317 ~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~g-sr~~--~ 392 (438)
.- ..|. ...++. ..|++++ .|.+.+....|+++.+++ +... .+.. .. ... ....+ +-.+ .
T Consensus 231 ~~---~~g~-~~~~gv---~PDi~t~--gK~lggG~p~~av~~~~~-i~~~~~~~~-~~-~~~----~~~~~~T~~~np~ 294 (431)
T PRK06209 231 WH---MRGA-QKLYGI---VPDLSCF--GKALGNGFAVSALAGKRE-YMELGGLEH-TD-RER----VFLLSTTHGAETH 294 (431)
T ss_pred cC---cchh-hHHhCC---Ccceeee--hhhhcCCcccEEEEEHHH-HHhhhcccc-cC-CCC----ceeeccCCCCCHH
Confidence 31 0011 000111 2376555 587655455677777643 3221 0000 00 000 01111 2222 2
Q ss_pred hHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 393 LIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 393 ~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
.+++..++|+.+.+++ ..++..++.+++++.|++
T Consensus 295 ~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 295 ALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNE 328 (431)
T ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHH
Confidence 3556667777664443 455555566666666543
No 378
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.69 E-value=1e-06 Score=90.45 Aligned_cols=139 Identities=18% Similarity=0.161 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH---hcCC---CCCeEEecCCC-cCcHHHHHhh
Q 013675 173 EAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN---KRGI---TRPEMIIPVSA-HSAYDKAAQY 245 (438)
Q Consensus 173 e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~---~~G~---~~~~Viv~~~~-h~s~~~a~~~ 245 (438)
..++.+.++++.+-+.-+ .+ .|+++||||+..|++.+|.+... .+|. .+.+|+.-..+ |....-+...
T Consensus 94 ~~~la~~l~~~~~p~~~~---~v--~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~ 168 (443)
T PRK08297 94 MARFVDTFARVLGDPELP---HL--FFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL 168 (443)
T ss_pred HHHHHHHHHhhcCCCCCC---EE--EEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh
Confidence 344555666665311111 25 89999999999999999876421 1343 24567766554 4333333322
Q ss_pred cCcE-----------EEEeeCCC-C----C----------ccCHHHHHHhhc---cCcEEEEEecCCCCCcccc----CH
Q 013675 246 FNIK-----------LWRVPVDK-E----F----------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIID----PI 292 (438)
Q Consensus 246 ~Gi~-----------v~~v~~~~-~----~----------~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~id----di 292 (438)
-|.. ...+|... . . .-|++++++.+. +++.+|++......-|.+. -+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl 248 (443)
T PRK08297 169 TNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFF 248 (443)
T ss_pred cCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHH
Confidence 2210 00111110 0 0 013466677775 4688999888877778763 38
Q ss_pred HHHHHHHHHcCCeEEEeccccchh
Q 013675 293 QELGELALSHGTCLHVDLCLGGFV 316 (438)
Q Consensus 293 ~~I~~la~~~~i~lhVD~a~gg~~ 316 (438)
++|.++|++||+++++|+++.||.
T Consensus 249 ~~lr~lc~~~g~llI~DEV~tGfG 272 (443)
T PRK08297 249 AAMRELCDEHDALLIFDEVQTGVG 272 (443)
T ss_pred HHHHHHHHHcCCEEEEechhhccC
Confidence 999999999999999999998764
No 379
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.67 E-value=6.5e-07 Score=86.65 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=139.2
Q ss_pred cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC-C-CCccCHHHHHHhhcc
Q 013675 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD-K-EFRADVKAIKKYINR 272 (438)
Q Consensus 195 v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~-~-~~~~d~~~Le~~I~~ 272 (438)
+.++-|.|||.|+..+..-+..... +..|.+|+++.+.........|+++...|.- . +..+|.+.+-..++.
T Consensus 95 v~t~Qt~GGTGAL~~~A~fl~~~~~------~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~ 168 (396)
T COG1448 95 VATVQTLGGTGALRVAADFLARFFP------DATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKT 168 (396)
T ss_pred HhheecCCcchHHHHHHHHHHHhCC------CceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHh
Confidence 5668899999999998887664321 1469999999999999999999999999973 3 666999999888763
Q ss_pred ---CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCc-cCCCCc-cEEEeCC
Q 013675 273 ---NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFD-FSVQGV-TSISVDV 344 (438)
Q Consensus 273 ---~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~-~~~~gv-dsis~s~ 344 (438)
+..++.-.+.+||||.-.. .++|.++.++.+..-++|-||-||.--.-+.. + .++ +...+. -+++.|.
T Consensus 169 a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa-~---~lR~~a~~~~~~lva~S~ 244 (396)
T COG1448 169 APEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDA-Y---ALRLFAEVGPELLVASSF 244 (396)
T ss_pred CCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHH-H---HHHHHHHhCCcEEEEehh
Confidence 5566666777899997644 67899999999999999999977653100000 0 000 011122 4677888
Q ss_pred CCCCCCCCC--cEEEEE--ecccccccchhcccccCCCccCCCCccCCCCCchHHHHHH---HHHHHcHHHHHHHHHHHH
Q 013675 345 HKYGLAPKG--TSVVLY--RNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA---ALMSLGQEGYLENTKAIM 417 (438)
Q Consensus 345 hK~~~~p~g--~g~l~~--r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a---al~~~g~~g~~~~~~~~~ 417 (438)
.|. ++-+| .|.+.+ .+++...........---+.|-.|.-. |+.+++.-+ .|+..-+..+.++.+++.
T Consensus 245 SKn-fgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~----Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~ 319 (396)
T COG1448 245 SKN-FGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAH----GAAVVATILNNPELRAEWEQELEEMRQRIL 319 (396)
T ss_pred hhh-hhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchh----hHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999 55554 444332 333322221110000000111111111 222222211 233344566788888999
Q ss_pred HHHHHHHHHhhc
Q 013675 418 EVSESIQKGLVL 429 (438)
Q Consensus 418 ~~a~~l~~~L~~ 429 (438)
++++.|.+.|++
T Consensus 320 ~mR~~lv~~L~~ 331 (396)
T COG1448 320 EMRQALVDALKA 331 (396)
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 380
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=98.66 E-value=7.1e-07 Score=83.10 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
-+...+...+.+.++++-+-++. ++.+++-.||.-++.++.. +. +.|+-.+..|.|+....++.
T Consensus 108 cGtq~iHk~LE~kiAqfh~rED~--------ilypscfdANag~feail~-----pe---dAvfSDeLNhASIIdGirLc 171 (417)
T KOG1359|consen 108 CGTQDIHKLLESKIAQFHGREDT--------ILYPSCFDANAGAFEAILT-----PE---DAVFSDELNHASIIDGIRLC 171 (417)
T ss_pred ecchHHHHHHHHHHHHHhCCCce--------EEeccccccchHHHHHhcC-----hh---hhhhccccccchhhhhhHHH
Confidence 34556666777788888776542 7888888888888887753 22 56777777899987766554
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhcc----CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhh
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINR----NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~----~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~ 322 (438)
. ..+.+|+.+++..+.+ +-++|+-...-+..|-+.|+++|.+++++||..+++|.|++.+.. -.
T Consensus 172 k---------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~---G~ 239 (417)
T KOG1359|consen 172 K---------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFF---GE 239 (417)
T ss_pred h---------hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceee---cC
Confidence 3 2345677888876654 345666666667899999999999999999999999999976653 23
Q ss_pred cCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEE
Q 013675 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVV 357 (438)
Q Consensus 323 ~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l 357 (438)
.|....+..--...+|++.....|.+.+..| |+.
T Consensus 240 tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyt 273 (417)
T KOG1359|consen 240 TGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYT 273 (417)
T ss_pred CCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCc
Confidence 3332212222234479999999999654443 543
No 381
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.64 E-value=4.6e-06 Score=90.83 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=62.0
Q ss_pred HHHHHhhc--------cCcEEEEEecC-CCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCC
Q 013675 264 KAIKKYIN--------RNTVLIVGSAP-GFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPF 330 (438)
Q Consensus 264 ~~Le~~I~--------~~t~~vv~~~~-~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~ 330 (438)
+.+++.|. +++.+|++.-. ...-|.+.+ ++++.++|++||++++.|+++.||.. .|. .+
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGR-----tG~---~f 638 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR-----LGV---ES 638 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCc-----ccc---hh
Confidence 55677664 24677777774 455677754 78999999999999999999998854 232 23
Q ss_pred ccCCCCc--cEEEeCCCCCCCCC-CCcEEEEEecc
Q 013675 331 DFSVQGV--TSISVDVHKYGLAP-KGTSVVLYRNR 362 (438)
Q Consensus 331 ~~~~~gv--dsis~s~hK~~~~p-~g~g~l~~r~~ 362 (438)
.....|+ |+++++ |.+.++ ...|.++.+++
T Consensus 639 a~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~ 671 (817)
T PLN02974 639 AWELLGCKPDIACYA--KLLTGGLVPLAATLATEE 671 (817)
T ss_pred hHHhcCCCCCEEeec--ccccCCCCccEEEEEcHH
Confidence 3333454 888886 775555 35777777754
No 382
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.1e-07 Score=88.10 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc
Q 013675 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 167 ~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
-+..+...++.+.+|+++|.++. + +|..| -..|.+.+-++. .+| .-|+-.+..|.|+.--|+.-
T Consensus 178 ~G~~~~hkelE~l~A~f~g~e~a-----~--vF~mG-f~TNs~~~p~l~-----~~g---sLIiSDelNHaSi~~GaRLS 241 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLGVEDA-----I--VFSMG-FATNSMNIPSLL-----GKG---SLIISDELNHASLITGARLS 241 (519)
T ss_pred cccHHHHHHHHHHHHHhcCCcce-----E--EEecc-ccccccCcceee-----cCC---cceeeccccchheecccccc
Confidence 35667778888899999999875 2 45443 333333333333 255 66777788999999999999
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhcc-------Cc------EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINR-------NT------VLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~-------~t------~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
|+.++....+ |..+||+.+.+ +| .+|++..--+.-|.++++.++.+++++|...++.|+++.
T Consensus 242 gAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHS 316 (519)
T KOG1357|consen 242 GATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHS 316 (519)
T ss_pred CceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeecccc
Confidence 9999988876 67777777753 22 355555555688999999999999999999999999998
Q ss_pred chhhhhhhhcCCCC-CCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc
Q 013675 314 GFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG 392 (438)
Q Consensus 314 g~~~pf~~~~g~~~-p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~ 392 (438)
.++++ +.|..+ .-+......+|++-..+.|.+.+ .| |.+ ..++++.+..... ++. ...++...+
T Consensus 317 iGA~g---~tGrgvce~~g~d~~dvDImMGtftKSfga-~G-Gyi-agsk~lid~lrt~----s~~-----~~yat~~sp 381 (519)
T KOG1357|consen 317 IGAMG---ATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-AG-GYI-AGSKELIDYLRTP----SPS-----ALYATSLSP 381 (519)
T ss_pred ccccC---CCCcceeeccCCCchhheeecceehhhccc-cc-cee-cCcHHHHhhhccC----CCc-----eeecccCCh
Confidence 77763 222211 01122223368888888898433 32 443 3444443322110 011 111222222
Q ss_pred hHHH-HHHHHHHH----cHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 393 LIAG-AWAALMSL----GQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 393 ~ia~-~~aal~~~----g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
.++. ...+++.+ |.++-++..+++.+++++++..|++.
T Consensus 382 pvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~ 424 (519)
T KOG1357|consen 382 PVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM 424 (519)
T ss_pred HHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence 2222 22334333 34566888899999999999999875
No 383
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.56 E-value=4e-06 Score=85.85 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=77.4
Q ss_pred eEcCChHHHHHHHHHHHHHHHHH---hcCCC---CCeEEecCCC-cCcHHHHHhhcCcE-E----------EEeeC----
Q 013675 198 NMTSGGTESILLAVKSSRDYMRN---KRGIT---RPEMIIPVSA-HSAYDKAAQYFNIK-L----------WRVPV---- 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~---~~G~~---~~~Viv~~~~-h~s~~~a~~~~Gi~-v----------~~v~~---- 255 (438)
.++++||||+..|++.+|.+..+ .+|.+ +.+|+.-..+ |-...-+...-|-. . ..++.
T Consensus 107 ~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~ 186 (431)
T TIGR03251 107 FFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLT 186 (431)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCccc
Confidence 89999999999999999976421 12321 3567666554 43333333222211 0 01111
Q ss_pred ---CCCC--------ccCHHHHHHhhc---cCcEEEEEecCCCCCcccc----CHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 256 ---DKEF--------RADVKAIKKYIN---RNTVLIVGSAPGFPHGIID----PIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 256 ---~~~~--------~~d~~~Le~~I~---~~t~~vv~~~~~~~tG~id----di~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
+... .-+++++++.+. +++.+|++.......|.+. .+++|.++|++||+.+++|++++|+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Gr 266 (431)
T TIGR03251 187 FPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL 266 (431)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence 1000 023455666664 5688999998888788764 389999999999999999999987644
No 384
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=98.52 E-value=3.3e-06 Score=79.00 Aligned_cols=160 Identities=22% Similarity=0.220 Sum_probs=110.7
Q ss_pred HHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe-cCCCcCcHHHH----------HhhcC
Q 013675 179 MTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII-PVSAHSAYDKA----------AQYFN 247 (438)
Q Consensus 179 ~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv-~~~~h~s~~~a----------~~~~G 247 (438)
-.|+.||....- +-.---+||.|+..|+.... ++| |+++. ....|-...+. .+-+|
T Consensus 73 vyA~vf~aE~a~-----VRpq~isGTHAI~~aLfg~L-----Rpg---Dell~i~G~PYDTLeevIG~rg~~~gSL~dfg 139 (416)
T COG4100 73 VYAQVFGAEAAL-----VRPQIISGTHAIACALFGIL-----RPG---DELLYITGSPYDTLEEVIGLRGEGQGSLKDFG 139 (416)
T ss_pred HHHHHhccccce-----eeeeeecchhHHHHHHHhcc-----CCC---CeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence 356677776543 22334578999999998876 378 87753 33333333333 34457
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecC----CCCCccccCHHHHHHHHHHc--CCeEEEeccccchhhhhhh
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAP----GFPHGIIDPIQELGELALSH--GTCLHVDLCLGGFVLPFAK 321 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~----~~~tG~iddi~~I~~la~~~--~i~lhVD~a~gg~~~pf~~ 321 (438)
++.+.||+..++++|.+.++.+|+++|++|.+.-. .-|.=.+++|+++.++.++- ++.+.||.|||-|+-
T Consensus 140 i~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE---- 215 (416)
T COG4100 140 IKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVE---- 215 (416)
T ss_pred cceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhh----
Confidence 88999999999999999999999999999877643 23444567778888888775 578999999997763
Q ss_pred hcCCCCCCCccCCCCccEEEeCCCCCCCCC--CCcEEEEEecc
Q 013675 322 KLGYPIPPFDFSVQGVTSISVDVHKYGLAP--KGTSVVLYRNR 362 (438)
Q Consensus 322 ~~g~~~p~~~~~~~gvdsis~s~hK~~~~p--~g~g~l~~r~~ 362 (438)
.......|+|.+..|.=|.-.+. +-.|.+.-|.+
T Consensus 216 -------~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 216 -------EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred -------ccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence 23445678999999999983222 22355444443
No 385
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.46 E-value=8.3e-06 Score=79.36 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcC-------CCCCeEEecCCCcCcHHHHHhhc
Q 013675 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-------ITRPEMIIPVSAHSAYDKAAQYF 246 (438)
Q Consensus 174 ~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G-------~~~~~Viv~~~~h~s~~~a~~~~ 246 (438)
-|+++.+++++|.++++ + ++..++|-.++.-+.+... .....| .++-+.++|.+.|-.....++.+
T Consensus 72 pe~r~l~a~llgv~~~~----v--iv~gNSSL~lM~d~i~~a~-~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~ 144 (425)
T PF12897_consen 72 PEARELFAELLGVPPEN----V--IVGGNSSLNLMHDTISRAM-LHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF 144 (425)
T ss_dssp HHHHHHHHHHHTS-GGG----E--EE-SS-HHHHHHHHHHHHH-HH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHH----E--EEeccchHHHHHHHHHHHH-hcCCCCCCCCchhccCceEEecCCCchHHHHHHHhh
Confidence 35667899999999987 4 4545555444443333221 111111 12346899999999999999999
Q ss_pred CcEEEEeeCCCCCccCHHHHHHhhccC--cEE-EEEecCCCCCccccCHHHHHHHH----HHcCCeEEEeccccchhhhh
Q 013675 247 NIKLWRVPVDKEFRADVKAIKKYINRN--TVL-IVGSAPGFPHGIIDPIQELGELA----LSHGTCLHVDLCLGGFVLPF 319 (438)
Q Consensus 247 Gi~v~~v~~~~~~~~d~~~Le~~I~~~--t~~-vv~~~~~~~tG~iddi~~I~~la----~~~~i~lhVD~a~gg~~~pf 319 (438)
|++++.||++++| .|++.+|+++.++ .+. -++..-+||+|....=+-+.++| ...+..+..|-||+--.+-
T Consensus 145 Giemi~VpM~~dG-PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~- 222 (425)
T PF12897_consen 145 GIEMIPVPMTEDG-PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLY- 222 (425)
T ss_dssp T-EEEEEEEETTE-E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSS-
T ss_pred CcEEEecCCCCCC-CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecc-
Confidence 9999999998765 7999999999654 444 45556689999997766555555 3568889999998632220
Q ss_pred hhhcCCCCCCCcc-------CCCCccEEEeCCCCCCCCCCCcEEEEEecccc
Q 013675 320 AKKLGYPIPPFDF-------SVQGVTSISVDVHKYGLAPKGTSVVLYRNREI 364 (438)
Q Consensus 320 ~~~~g~~~p~~~~-------~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~ 364 (438)
..... ....+. ..++--..-.|+.|.-+.+.|++++..+.+.+
T Consensus 223 -~~~~~-~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl 272 (425)
T PF12897_consen 223 -DEEPR-DALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANL 272 (425)
T ss_dssp -SSSS-------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHH
T ss_pred -ccccc-hhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHH
Confidence 00000 000011 11223467788999999999999988776544
No 386
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=98.37 E-value=1.1e-05 Score=79.97 Aligned_cols=194 Identities=17% Similarity=0.200 Sum_probs=133.3
Q ss_pred CCeEEecCCCcCcHH-HHHhhcCcEEEEeeC----CC---CCccCHHHHHHhhcc------CcEEEEEecCCCCCccccC
Q 013675 226 RPEMIIPVSAHSAYD-KAAQYFNIKLWRVPV----DK---EFRADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP 291 (438)
Q Consensus 226 ~~~Viv~~~~h~s~~-~a~~~~Gi~v~~v~~----~~---~~~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd 291 (438)
.|.+++++..|+... -+|+.+|+..+.|.+ +. .|+||...+++.|++ ++..++..-+.+-.|..|.
T Consensus 231 aPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDm 310 (838)
T KOG0630|consen 231 APTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDM 310 (838)
T ss_pred CceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHH
Confidence 578999999998854 578889985444332 22 468999999999975 3678888999999999999
Q ss_pred HHHHHHHHHHcC-CeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchh
Q 013675 292 IQELGELALSHG-TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV 370 (438)
Q Consensus 292 i~~I~~la~~~~-i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~ 370 (438)
+-+|.++|++++ .|+|.-|---+ .+-|.+-.. -...-...+||++...--|++.|. .-+++...+ +....
T Consensus 311 i~kildi~eahakfWLHasGhaiA-ALt~aepnn----il~HV~eqldSMal~ialWLGiPS-aPiV~LHRP-leg~a-- 381 (838)
T KOG0630|consen 311 ILKILDICEAHAKFWLHASGHAIA-ALTCAEPNN----ILGHVEEQLDSMALNIALWLGIPS-APIVLLHRP-LEGSA-- 381 (838)
T ss_pred HHHHHHHHHHhhheeEeeccchhh-heeecCccc----chhHHHHHHhhccchhHHHhCCCC-CceEEeecc-ccccc--
Confidence 999999999987 99998764211 111111000 001112235999999999976665 344444322 11100
Q ss_pred cccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013675 371 AVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMFLPP 436 (438)
Q Consensus 371 ~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 436 (438)
...+.+..+.-.|-.++ ..|.+++++|.+.+.++++....+++.+.+.+.+++++++.
T Consensus 382 ------aSafesdpi~rekLdaL--p~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemi 439 (838)
T KOG0630|consen 382 ------ASAFESDPILREKLDAL--PLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMI 439 (838)
T ss_pred ------chhcccChHHHHhhccc--hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEe
Confidence 00011111112334444 89999999999999999999999999999999999998864
No 387
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.7e-06 Score=78.23 Aligned_cols=235 Identities=15% Similarity=0.112 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC
Q 013675 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN 247 (438)
Q Consensus 168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G 247 (438)
....+-.++..-..++.|.....+ |-++.--..+++.+++.++|.+..+ ..-|+-+....-|..|..-..|
T Consensus 54 ll~~isne~a~~~i~l~glhav~n----c~vvpl~tgmslslc~~s~r~krpk-----akyiiw~ridqks~~ksi~~ag 124 (432)
T KOG3843|consen 54 LLACISNEFAKDAIHLAGLHAVAN----CFVVPLATGMSLSLCFLSLRHKRPK-----AKYIIWLRIDQKSCFKSIIHAG 124 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhc----eeEEeccccccHHHHHHHHhhcCCc-----ccEEEEEecchHHHHHHHHhcC
Confidence 345667777777888888764321 4355455557788888888753211 1357778888888888888889
Q ss_pred cEEEEeeC--CC-CCccCHHHHHHhhccC-cEEEEEecCCC---CCccccCHHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 248 IKLWRVPV--DK-EFRADVKAIKKYINRN-TVLIVGSAPGF---PHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 248 i~v~~v~~--~~-~~~~d~~~Le~~I~~~-t~~vv~~~~~~---~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
.+.+.|.. +. ....|++++++.|++. .-++.+.+.++ ..-..|.+++|+.+|..|+++-+|..+||--.--.+
T Consensus 125 fepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i 204 (432)
T KOG3843|consen 125 FEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECI 204 (432)
T ss_pred CCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHH
Confidence 98777753 22 4568999999999763 33444334333 233457799999999999999999999973221110
Q ss_pred hhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAA 400 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aa 400 (438)
... .-..+...+|.++-+.-|.+..|-|..++..-++...+. ....|+|....+| -..+..+
T Consensus 205 ~~i-----aa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~---iak~ypgrasa~p----------s~dllit 266 (432)
T KOG3843|consen 205 HKI-----AAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQE---IAKMYPGRASASP----------SLDLLIT 266 (432)
T ss_pred HHH-----HHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHH---HHHhCCCccccCc----------cHHHHHH
Confidence 000 001122336888889999999999876654433333221 1122344332222 2256677
Q ss_pred HHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 401 LMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 401 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
|.++|..+|.+...+..++-.++++.|.+
T Consensus 267 ll~~gqn~f~e~~~eqkemf~~l~~ki~~ 295 (432)
T KOG3843|consen 267 LLSLGQNAFKELFGEQKEMFLKLRNKIIK 295 (432)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999888887777777777666543
No 388
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3e-05 Score=75.20 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=125.2
Q ss_pred HHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCC
Q 013675 146 SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGIT 225 (438)
Q Consensus 146 ~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~ 225 (438)
+-+...+..+ .-....|..|-+.....-.+.+.+++++|.+.. ++.+-|-.++..++.|+. ++|
T Consensus 115 e~a~~~lrky-GvGsCGPrGFYGt~DvHldlE~~iakF~G~E~a--------ivYs~gF~ti~S~ipafs-----KrG-- 178 (467)
T KOG1358|consen 115 EEASFTLRKY-GVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDA--------IVYSYGFSTIESAIPAFS-----KRG-- 178 (467)
T ss_pred HHHHHHHHHh-CCCCcCCCcccccceeecccHHHHHHhhCCcce--------eeeccccchhhhcchhhh-----ccC--
Confidence 3344444444 222344555556555555666779999999864 577777777787888876 378
Q ss_pred CCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCc-------------EEEEEecCCCCCccccCH
Q 013675 226 RPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT-------------VLIVGSAPGFPHGIIDPI 292 (438)
Q Consensus 226 ~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t-------------~~vv~~~~~~~tG~iddi 292 (438)
|.+++.+..+.++.+..+...-++++...+ |.+++|+.+.+.+ +.+++..---++|.+.|+
T Consensus 179 -DIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl 252 (467)
T KOG1358|consen 179 -DIIFVDEAVNFAIQKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPL 252 (467)
T ss_pred -cEEEEehhhhHHHHHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccccc
Confidence 889999999999999888887777777654 7788877765432 467777777789999999
Q ss_pred HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCC-CCCccCCCCccEEEeCCCCC
Q 013675 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPI-PPFDFSVQGVTSISVDVHKY 347 (438)
Q Consensus 293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~-p~~~~~~~gvdsis~s~hK~ 347 (438)
.+|.++..||...+++|..+.-+.+ .+.|..+ ..+......+|.++.+..-.
T Consensus 253 ~~iv~lk~Kyk~RvildEs~SfG~l---g~~GrGvteH~~v~~~~iDiv~~sm~~a 305 (467)
T KOG1358|consen 253 PEIVKLKNKYKFRVILDESLSFGVL---GKTGRGVTEHFGVPITDIDIVTASMETA 305 (467)
T ss_pred HHHHHHHhhheEEEEEecccccccc---cccCccccccCCCCccceeeeeeccccc
Confidence 9999999999999999999865554 3444322 12333334568888876444
No 389
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=97.98 E-value=0.00024 Score=68.82 Aligned_cols=235 Identities=15% Similarity=0.082 Sum_probs=137.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHH
Q 013675 164 DIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAA 243 (438)
Q Consensus 164 ~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~ 243 (438)
..+....++..+..+.+.++++.|.+-. .++.-.|+|....++.+.+.. +++. +-|..-.-+..+...+-
T Consensus 43 HRsk~~~~v~~~a~~~lreLl~iPd~Y~----VlflqGGat~qf~~~p~nLl~----~~~~--~yv~~g~Ws~~a~~eA~ 112 (365)
T COG1932 43 HRSKEFKNVLEEAEKDLRELLNIPDDYK----VLFLQGGATGQFAMAPMNLLG----KRGT--DYVDTGAWSEFAIKEAK 112 (365)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCce----EEEEcCccHHHHHHHHHhhhc----ccCc--eeEeeeehhHhHHHHHH
Confidence 3455667778888999999999998752 445556777777777776653 1220 11333333333444443
Q ss_pred hhcC-cEEEEeeCCC---CCccCHHHHHHhhccCcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccccchhhh
Q 013675 244 QYFN-IKLWRVPVDK---EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 244 ~~~G-i~v~~v~~~~---~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~gg~~~p 318 (438)
++.. .++..+...+ ..-.|++..+ +.++...|..|+-+|.+|+--| ...+.. +.++++|...+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr- 184 (365)
T COG1932 113 KVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSR- 184 (365)
T ss_pred HhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcC-
Confidence 3333 3333222211 2334555444 5555666888888888997644 232221 178999999764433
Q ss_pred hhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCc-hHHHH
Q 013675 319 FAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGG-LIAGA 397 (438)
Q Consensus 319 f~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~-~ia~~ 397 (438)
++|+ ...|.+.++.+|. .||-|.+++++|++.+.+..-...+.. -.|......|+-..+ .+.+.
T Consensus 185 ----------~iDv--sk~dviyagaQKn-lGpaGltvvIvr~~~l~r~~~~~~P~i--f~y~~~~~~~s~yNTPptfa~ 249 (365)
T COG1932 185 ----------PIDV--SKYDVIYAGAQKN-LGPAGLTVVIVRPDLLERAESYTLPSI--FDYLTHADNGSMYNTPPTFAW 249 (365)
T ss_pred ----------CCCh--hHcceEEEehhhc-cCccceEEEEEcHHHHhcccccCCchH--hhchhhhccCCccCCcHHHHH
Confidence 3444 3468999999999 799999999999765443211101100 001111222222222 22233
Q ss_pred H---HHHHHHc-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013675 398 W---AALMSLG-QEGYLENTKAIMEVSESIQKGLVLFP 431 (438)
Q Consensus 398 ~---aal~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~ 431 (438)
+ ..++++- .-|++.+.++..+.++.|++.+.+.+
T Consensus 250 y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 250 YLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 3444443 35789999999999999999998873
No 390
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=97.37 E-value=0.012 Score=55.84 Aligned_cols=210 Identities=16% Similarity=0.231 Sum_probs=129.3
Q ss_pred ccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc-EEEEeeCC--CCCccCHHHHHHhh
Q 013675 194 QVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI-KLWRVPVD--KEFRADVKAIKKYI 270 (438)
Q Consensus 194 ~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi-~v~~v~~~--~~~~~d~~~Le~~I 270 (438)
.+.|+-+-+||.|+..+..-+..+... ..|+++.++.......++-.|. ++...+.= ++-.+|.+.+-..|
T Consensus 99 Rv~~vQslsGTGAl~~~A~Fl~~~~~~------~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl 172 (410)
T KOG1412|consen 99 RVFGVQSLSGTGALRIAADFLATFYNK------NTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDL 172 (410)
T ss_pred cccceeeccccchhhhhHHHHHHhccc------ceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHH
Confidence 367889999999999887665543321 4699999999999999999994 56666552 35678999998888
Q ss_pred ccCc---EEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc--------CCC
Q 013675 271 NRNT---VLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF--------SVQ 335 (438)
Q Consensus 271 ~~~t---~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~--------~~~ 335 (438)
+..| ..++-...+||||. || ..+|+++.++.+....-|-+|-||+- | ..+- -..
T Consensus 173 ~~APe~si~iLhaCAhNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGfAS------G----D~~~DawAiR~fV~~ 241 (410)
T KOG1412|consen 173 ESAPEGSIIILHACAHNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGFAS------G----DLDADAWAIRYFVEQ 241 (410)
T ss_pred hhCCCCcEEeeeccccCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhccccc------C----CccccHHHHHHHHhc
Confidence 7543 33333444789995 44 56888888999999999999987653 1 1111 122
Q ss_pred Cc-cEEEeCCCCCC--CCCCCcEEE--EEeccccccc---c--hhcccccCCCccCCCCccCCCCCchHHHHHH---HHH
Q 013675 336 GV-TSISVDVHKYG--LAPKGTSVV--LYRNREIRKH---Q--FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWA---ALM 402 (438)
Q Consensus 336 gv-dsis~s~hK~~--~~p~g~g~l--~~r~~~~~~~---~--~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~a---al~ 402 (438)
|. =+++-|+.|.+ +++ ..|.+ +.+++..... | ......|.. |.-.|.| |++--. .++
T Consensus 242 g~e~fv~QSFaKNfGlYne-RvGnltvv~~n~a~i~~v~SQl~lviR~~~SN-----PPAyGAr----IV~kvL~tP~lr 311 (410)
T KOG1412|consen 242 GFELFVCQSFAKNFGLYNE-RVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSN-----PPAYGAR----IVHKVLSTPELR 311 (410)
T ss_pred CCeEEEEhhhhhhcccccc-cccceEEEecChhHHHHHHHHHHHHHhhccCC-----CcchhhH----HHHHHhcCHHHH
Confidence 33 35666888883 233 24443 4455543321 1 111222221 1112222 211111 111
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013675 403 SLGQEGYLENTKAIMEVSESIQKGLVLF 430 (438)
Q Consensus 403 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 430 (438)
..-...++.+..++.+++..|++.|.++
T Consensus 312 e~W~~sik~MssRI~~MR~aLrd~L~aL 339 (410)
T KOG1412|consen 312 EQWIQSIKTMSSRIKKMRTALRDHLVAL 339 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1123445677788999999999998765
No 391
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=97.33 E-value=0.02 Score=53.74 Aligned_cols=261 Identities=16% Similarity=0.085 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhhccCCCC------cccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEc-CChHHHHHHHHHHHHH
Q 013675 144 HFSLINEACSMFAHTNPLH------LDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMT-SGGTESILLAVKSSRD 216 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~n~~~------~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t-~ggt~a~~~al~a~~~ 216 (438)
..+++.++-....+-|... ...+.....+..+..+.+.+|++.|.... | +|. .|||.-......-+.-
T Consensus 19 p~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~---v--lf~QGGGt~qFaAv~lNL~g 93 (370)
T KOG2790|consen 19 PESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYK---V--LFLQGGGTGQFAAVPLNLIG 93 (370)
T ss_pred CHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCcee---E--EEEeCCCcccccccchhhhc
Confidence 3456666666666666442 23345567778888899999999997751 3 444 5555433222222210
Q ss_pred HHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-C--CccCHHHHHHhhccCcEEEEEecCCCCCccccC-H
Q 013675 217 YMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-E--FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP-I 292 (438)
Q Consensus 217 ~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~--~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~idd-i 292 (438)
-+.|...|-|++..-+--++.++-++--.+.+..+..+ + --.|.+.++. +++...|..|.-.+.+|+-.| +
T Consensus 94 ---lK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETVHGVEf~~~ 168 (370)
T KOG2790|consen 94 ---LKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYCANETVHGVEFDFI 168 (370)
T ss_pred ---cccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEecCceeeceecCCC
Confidence 12343335566666566666666665555555555433 2 2346665554 345568899999999997643 3
Q ss_pred HHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCCCCCCCCCCcEEEEEecccccccchhcc
Q 013675 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAV 372 (438)
Q Consensus 293 ~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~ 372 (438)
. +-.-.|..++.|-..- |+ ..++|+... +.+....+|. .+|.|.-++++|++-+-.. ....
T Consensus 169 P----~~~~~~~vlVaDmSSn-----fl------SrpvDvsk~--gvi~aGAQKN-~G~aG~Tvvivr~dllg~~-~~~t 229 (370)
T KOG2790|consen 169 P----VNDPKGAVLVADMSSN-----FL------SRPVDVSKF--GVIFAGAQKN-VGPAGVTVVIVRKDLLGNA-LDIT 229 (370)
T ss_pred C----CCCCCCceEEEecccc-----hh------cCCccchhc--ceEEeccccc-cCccccEEEEEehhhhccc-ccCC
Confidence 3 2234578889997642 22 226777655 4678889999 7999999999997644322 1111
Q ss_pred ---cccCCCccCCCCccCCCCCchHHHHHHHHHHHcH-HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013675 373 ---TEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ-EGYLENTKAIMEVSESIQKGLVLFPMFL 434 (438)
Q Consensus 373 ---~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 434 (438)
.+|.--. ...++..+.|...+..+-..++++-+ .|.+.+.+...+.++.+++.|.+..|+.
T Consensus 230 P~v~dyk~~~-~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy 294 (370)
T KOG2790|consen 230 PSVLDYKIMD-KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFY 294 (370)
T ss_pred ccccceeeec-cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 1111100 01122334444445555566666644 4678888888999999999999877764
No 392
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0028 Score=60.87 Aligned_cols=218 Identities=13% Similarity=0.163 Sum_probs=127.9
Q ss_pred cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC-C-CCCccCHHHHHHhhcc
Q 013675 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV-D-KEFRADVKAIKKYINR 272 (438)
Q Consensus 195 v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~-~-~~~~~d~~~Le~~I~~ 272 (438)
+.-+-|-+||.|+..+..-+.... ++ ..|++|.++.....+.....|+.+..... + .+..+|.+.+-+.+.+
T Consensus 121 i~tvQ~lSGTGaLriga~Fl~~f~---~~---~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~ 194 (427)
T KOG1411|consen 121 IVTVQTLSGTGALRVGAEFLARFY---PS---RDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGE 194 (427)
T ss_pred eeEEEeccCcchhhHHHHHHHhhc---cc---cceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhc
Confidence 444567889988877665543221 23 57999999988877777888987766654 2 3677888777666654
Q ss_pred C---cEEEEEecCCCCCccc---cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCcc--------CCCCcc
Q 013675 273 N---TVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDF--------SVQGVT 338 (438)
Q Consensus 273 ~---t~~vv~~~~~~~tG~i---ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~--------~~~gvd 338 (438)
. ...++-.+.+||||+= +..++|.++.++.+..-+.|.+|-||.- | .+|- ...|..
T Consensus 195 ~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaS------G----~~d~DA~avR~F~~~g~~ 264 (427)
T KOG1411|consen 195 APEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFAS------G----DLDKDAQAVRLFVEDGHE 264 (427)
T ss_pred CCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhccccc------C----CchhhHHHHHHHHHcCCc
Confidence 2 3444445557889853 3377899999999999999999987753 1 1111 123333
Q ss_pred -EEEeCCCCCCCCCCC--cEEE--EEecccccccchhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHHHHHHH
Q 013675 339 -SISVDVHKYGLAPKG--TSVV--LYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENT 413 (438)
Q Consensus 339 -sis~s~hK~~~~p~g--~g~l--~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g~~~~~ 413 (438)
.++-|.-|.+ |-+| .|.+ ++.+.+...+.-....-.-...|..|...|.|-.+.|..- -.|+..-.....-+.
T Consensus 265 ~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d-~~l~~~W~~evk~Ma 342 (427)
T KOG1411|consen 265 ILLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSD-PDLKNQWLGEVKGMA 342 (427)
T ss_pred eEeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCC-hHHHHHHHHHHHHHH
Confidence 4555677873 3333 3433 4444443222100000011123445556666544322111 111111123345667
Q ss_pred HHHHHHHHHHHHHhhcC
Q 013675 414 KAIMEVSESIQKGLVLF 430 (438)
Q Consensus 414 ~~~~~~a~~l~~~L~~~ 430 (438)
++++.+++.|.+.|++.
T Consensus 343 dRi~~mR~~L~d~L~~~ 359 (427)
T KOG1411|consen 343 DRIISMRQQLFDALEKE 359 (427)
T ss_pred HhhhhhHHHHhHHhhcC
Confidence 78888899999998764
No 393
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=96.87 E-value=0.005 Score=58.09 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=108.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhc------C--c-E---EEEeeCCC--CC----
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF------N--I-K---LWRVPVDK--EF---- 259 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~------G--i-~---v~~v~~~~--~~---- 259 (438)
.|+++|||||.+|++.+|+..+.+ |.|.+.-..|.-.....+.- | . + ++..|+.+ .|
T Consensus 106 ~F~NSGSEANDLALRLAR~ftkhq-----DvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~ 180 (452)
T KOG1403|consen 106 FFVNSGSEANDLALRLARNFTKHQ-----DVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD 180 (452)
T ss_pred EEecCCchhhHHHHHHHHhhcccC-----ceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence 899999999999999999865432 44444333332222222111 1 1 2 22234321 11
Q ss_pred ---------ccCHHHHHHhhcc------CcEEEEEecCCCCCccccC----HHHHHHHHHHcCCeEEEeccccchhhhhh
Q 013675 260 ---------RADVKAIKKYINR------NTVLIVGSAPGFPHGIIDP----IQELGELALSHGTCLHVDLCLGGFVLPFA 320 (438)
Q Consensus 260 ---------~~d~~~Le~~I~~------~t~~vv~~~~~~~tG~idd----i~~I~~la~~~~i~lhVD~a~gg~~~pf~ 320 (438)
..-.+.+++.+++ ..++.++.+-++--|.+-| ++++++..+.+|-..+.|+++-||..
T Consensus 181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR--- 257 (452)
T KOG1403|consen 181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR--- 257 (452)
T ss_pred ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc---
Confidence 1123445555542 2455666666676777766 78999999999999999999988754
Q ss_pred hhcCCCCCCCccCCCCc--cEEEeCCCCCCCCCCCcEEEEEecccccccchhcccccCCCccCCCCccCCCCCchHHHHH
Q 013675 321 KKLGYPIPPFDFSVQGV--TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAW 398 (438)
Q Consensus 321 ~~~g~~~p~~~~~~~gv--dsis~s~hK~~~~p~g~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~ 398 (438)
.|.. -+.+...++ |++++. |-++.+...+.+..+.+ +.+. +.. .|-.| ....|..|- ++.
T Consensus 258 --vG~h--yWafq~y~fiPDIVtmg--KpmGNGhPVa~Vattke-IA~A-f~a----tgv~Y--FNTyGGnPV----sCA 319 (452)
T KOG1403|consen 258 --VGSH--YWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTKE-IAQA-FHA----TGVEY--FNTYGGNPV----SCA 319 (452)
T ss_pred --cchh--hhhhhhhccccchheec--ccCCCCCeeeEEeccHH-HHHH-hcc----cccee--hhccCCCch----hHH
Confidence 2221 133333333 666654 43333344566666533 3221 100 01111 111222222 344
Q ss_pred HHHHHHcHHHHHHHHHHHHHHHHHHHHHhhc
Q 013675 399 AALMSLGQEGYLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 399 aal~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 429 (438)
..+..+..-.-+++.++..+..++|...|++
T Consensus 320 v~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~ 350 (452)
T KOG1403|consen 320 VGLAVMRVCEDENLQEHAQQVGEKLEVLLRR 350 (452)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4333333333345566666677777776654
No 394
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=96.48 E-value=0.022 Score=49.54 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=49.7
Q ss_pred cchhHHHHHHHHHHHHHHHhC----CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCc
Q 013675 165 IFQSVARFEAEVIAMTAALLG----NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA 238 (438)
Q Consensus 165 ~~~~~~~~e~~~~~~~a~l~g----~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s 238 (438)
...+..++.+.+.+++.+.+| .++++ | ++|+|+++++.+++.++.+ +| |.|+++.+.|+.
T Consensus 90 ~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~----I--vvt~Ga~~al~~l~~~l~d-----pG---D~VlVp~P~Y~~ 153 (153)
T PLN02994 90 DYHGLANFRKAIANFMAEARGGRVKFDADM----I--VLSAGATAANEIIMFCIAD-----PG---DAFLVPTPYYAA 153 (153)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCccchhh----e--EEcCCHHHHHHHHHHHHcC-----CC---CEEEEeCCCCCC
Confidence 355677889999999999988 34444 7 9999999999999999875 78 999999998863
No 395
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=96.32 E-value=0.0074 Score=58.39 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~ 249 (438)
.++++++ +.+-++.|--..+ |--+ ++.+|+|+-++.|+-|+.-... ..-+.-.|+.+.+.|+++.....++.-.
T Consensus 46 ~eL~~~I-r~LH~~VGNAvt~-gr~I--V~GtGsTQL~~AalyALSp~~~--~~~~p~~VVa~aPYY~~Y~~qt~~f~s~ 119 (363)
T PF04864_consen 46 PELERQI-RRLHRVVGNAVTD-GRYI--VFGTGSTQLFNAALYALSPNAS--PSSSPASVVAAAPYYSSYPEQTDFFDSR 119 (363)
T ss_dssp HHHHHHH-HHHHHHH-SB--T-TSEE--EEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-BT
T ss_pred HHHHHHH-HHHHHHhcccccc-CcEE--EEcCCHHHHHHHHHHhcCCCCC--CCCCCceeEecCCCccchHHHHHhcccc
Confidence 4455433 3445555542221 1224 8899999999999998764211 1111237888888889898888887543
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCC
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~ 329 (438)
.-...=|. ......=+..+..=++|.||||.|.+-. .+++.-+..++.|-||= +| +- . |
T Consensus 120 ~y~w~Gda------~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYY---WP--hy----T-p 178 (363)
T PF04864_consen 120 LYKWAGDA------SNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYY---WP--HY----T-P 178 (363)
T ss_dssp TEEEEEEC------CCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT----ST--TT----S--
T ss_pred CccccccH------HhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeee---cc--cc----c-c
Confidence 33332221 1111111234667788999999998742 12344456679999973 33 10 1 1
Q ss_pred CccCCCCccEEEeCCCCC-CCCCCCcEEEEEecccccccc
Q 013675 330 FDFSVQGVTSISVDVHKY-GLAPKGTSVVLYRNREIRKHQ 368 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~-~~~p~g~g~l~~r~~~~~~~~ 368 (438)
+.. ...=|++.++..|. |.++...|+-+++|+++.+..
T Consensus 179 I~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM 217 (363)
T PF04864_consen 179 ITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKM 217 (363)
T ss_dssp --S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHH
T ss_pred cCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHH
Confidence 111 11238999999998 788888999999999876653
No 396
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=92.40 E-value=1.4 Score=43.07 Aligned_cols=140 Identities=15% Similarity=0.204 Sum_probs=77.1
Q ss_pred CHHHHHHhhcc-----C-cEEEEEecCCCCCccc----cCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCC--CCC
Q 013675 262 DVKAIKKYINR-----N-TVLIVGSAPGFPHGII----DPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP--IPP 329 (438)
Q Consensus 262 d~~~Le~~I~~-----~-t~~vv~~~~~~~tG~i----ddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~--~p~ 329 (438)
.++++|+.|.. + .+++++.-.++.-|-- +=++.+.+++++||+.++||+++.|+.. .|.- ...
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGa-----TGk~WaHeh 328 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGA-----TGKFWAHEH 328 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCc-----cCceeeehh
Confidence 35667777752 2 4566666655555532 3379999999999999999999876543 1210 001
Q ss_pred CccCCCCccEEEeCCCCCCCCCCCcEEEEEeccccccc-chhcccccCCCccCCCCccCCCCCchHHHHHHHHHHHcHHH
Q 013675 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-QFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEG 408 (438)
Q Consensus 330 ~~~~~~gvdsis~s~hK~~~~p~g~g~l~~r~~~~~~~-~~~~~~~~~g~~~~~~~~~gsr~~~~ia~~~aal~~~g~~g 408 (438)
++ ....+|.+++| .|+..+ | ++.+++++.. .|.....|-|... . ..-+-..++.+.++
T Consensus 329 w~-l~~PpD~vTFS-KK~q~g----G--ffh~~~frpn~pYrifNTWmGdP~----------k--~lll~~vv~~I~~~- 387 (484)
T KOG1405|consen 329 WN-LDSPPDVVTFS-KKFQTG----G--FFHDEEFRPNEPYRIFNTWMGDPS----------K--NLLLEEVVQEIKRE- 387 (484)
T ss_pred cC-CCCCccceehh-hhhhcC----c--cccCcccCCCchHHHhhhhcCChH----------H--HHHHHHHHHHHhHH-
Confidence 11 12235888876 244211 2 3455666654 5666666766431 1 11222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013675 409 YLENTKAIMEVSESIQKGLVL 429 (438)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~L~~ 429 (438)
.+.+......++|.++|.+
T Consensus 388 --~Ll~n~~~vG~~l~~gL~~ 406 (484)
T KOG1405|consen 388 --DLLNNVAHVGKALLKGLLE 406 (484)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666543
No 397
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=70.46 E-value=51 Score=32.67 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=58.5
Q ss_pred ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC------cHHHHHhhcCcEEEEeeCCCCCccCHHHHHHh
Q 013675 196 CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS------AYDKAAQYFNIKLWRVPVDKEFRADVKAIKKY 269 (438)
Q Consensus 196 ~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~------s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~ 269 (438)
|.+-.|||-.|..++..+... -|.. +..+.-+..+. ...+.++.+|+....+.++ .+.+++.
T Consensus 62 ~iV~lSGGkDSs~la~ll~~~-----~gl~-~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d------~~~~~~l 129 (343)
T TIGR03573 62 CIIGVSGGKDSTYQAHVLKKK-----LGLN-PLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITIN------PETFRKL 129 (343)
T ss_pred EEEECCCCHHHHHHHHHHHHH-----hCCc-eEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCC------HHHHHHH
Confidence 558899999998887544332 2421 22233333322 2556777789988887764 3333333
Q ss_pred hccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccc
Q 013675 270 INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 270 I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg 314 (438)
...... -...|..+.. ......+.++|+++|+++++.|..+.
T Consensus 130 ~~~~~~--~~~~pc~~c~-~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 130 QRAYFK--KVGDPEWPQD-HAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHh--ccCCCchhhh-hHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 221111 0112222111 12256888999999999999987543
No 398
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=69.08 E-value=55 Score=30.98 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=42.5
Q ss_pred CcCcHHHHHhhcCcEEEEeeCCCCCccCHHHH---HHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE-e
Q 013675 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAI---KKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV-D 309 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~L---e~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV-D 309 (438)
.|.+|.-.++.+|+++..+.. ++....+.+| .+.|.+ +.++|+.. ++.+. +.+..++++.|+.+.. |
T Consensus 176 ~H~af~Y~~~~ygl~~~~~~~-~~~eps~~~l~~l~~~ik~~~v~~if~e-~~~~~------~~~~~la~~~g~~v~~ld 247 (266)
T cd01018 176 YHPAWGYFARDYGLTQIPIEE-EGKEPSPADLKRLIDLAKEKGVRVVFVQ-PQFST------KSAEAIAREIGAKVVTID 247 (266)
T ss_pred ECchhHHHHHHcCCEEEecCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCc------HHHHHHHHHcCCeEEEeC
Confidence 788899999999999876532 3445545444 445554 45555544 44433 3344788888987653 5
No 399
>PLN03013 cysteine synthase
Probab=66.71 E-value=37 Score=34.78 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=49.4
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEE
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLI 277 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~v 277 (438)
+-.++|..++-+|..+.. .|++ -.|++|+.......+.++.+|.+++.++.+.+..-..+..+++..++...+
T Consensus 179 VeaSSGN~G~ALA~~a~~------~G~~-~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~ 251 (429)
T PLN03013 179 VEPTSGNTGIGLAFIAAS------RGYR-LILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAY 251 (429)
T ss_pred EEECCcHHHHHHHHHHHH------cCCC-EEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeE
Confidence 566888888888887765 5542 367888888888889999999999998754322112344444444433344
Q ss_pred EE
Q 013675 278 VG 279 (438)
Q Consensus 278 v~ 279 (438)
++
T Consensus 252 ~~ 253 (429)
T PLN03013 252 ML 253 (429)
T ss_pred eC
Confidence 43
No 400
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=65.16 E-value=15 Score=33.16 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=33.1
Q ss_pred cEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 274 TVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 274 t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
-.+|++|-+++..|.++|.+.-+++++++|+.+|.=+.
T Consensus 113 kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgi 150 (191)
T cd01455 113 AIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFI 150 (191)
T ss_pred cEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEe
Confidence 46889999999999999999889999999999886554
No 401
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=64.61 E-value=5.4 Score=42.56 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=34.5
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccch
Q 013675 277 IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315 (438)
Q Consensus 277 vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~ 315 (438)
+..-+|++..|.-++++++.+-||+.||-|++|-+++-|
T Consensus 201 ~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF 239 (628)
T COG0296 201 TGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHF 239 (628)
T ss_pred ceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcC
Confidence 344588999999999999999999999999999998644
No 402
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=63.12 E-value=1.1e+02 Score=28.50 Aligned_cols=129 Identities=14% Similarity=0.177 Sum_probs=65.5
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHH-hcCCCCCeEEecCCCcC
Q 013675 159 NPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRN-KRGITRPEMIIPVSAHS 237 (438)
Q Consensus 159 n~~~~~~~~~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~-~~G~~~~~Viv~~~~h~ 237 (438)
||+-|-....+..+-..+.+.++++ ++.+ ...+..+ .+....-+..+..+... ...++...+++ .|.
T Consensus 91 npH~Wldp~~~~~~~~~Ia~~L~~~---~P~~-----~~~y~~N-~~~~~~~L~~l~~~~~~~~~~~~~~~~v~---~h~ 158 (256)
T PF01297_consen 91 NPHVWLDPENAKKMAEAIADALSEL---DPAN-----KDYYEKN-AEKYLKELDELDAEIKEKLAKLPGRPVVV---YHD 158 (256)
T ss_dssp ESTGGGSHHHHHHHHHHHHHHHHHH---TGGG-----HHHHHHH-HHHHHHHHHHHHHHHHHHHTTSSGGEEEE---EES
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHh---Cccc-----hHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCCeEEE---ECh
Confidence 5554444444566666666777766 3432 1122222 22222223333222221 12222233443 688
Q ss_pred cHHHHHhhcCcEEEEee-CCCCCccCHHHHHHhh---cc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeE
Q 013675 238 AYDKAAQYFNIKLWRVP-VDKEFRADVKAIKKYI---NR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL 306 (438)
Q Consensus 238 s~~~a~~~~Gi~v~~v~-~~~~~~~d~~~Le~~I---~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l 306 (438)
++.-.++.+|+++..+- ..++....++++.+.+ .+ +.++|+.. ++.+. +.+..++++.|+.+
T Consensus 159 ~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e-~~~~~------~~~~~la~~~g~~v 225 (256)
T PF01297_consen 159 AFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTE-PQFSS------KLAEALAKETGVKV 225 (256)
T ss_dssp TTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEE-TTS-T------HHHHHHHHCCT-EE
T ss_pred HHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEec-CCCCh------HHHHHHHHHcCCcE
Confidence 88889999999887766 4445666777666655 33 45566554 33322 34556688888886
No 403
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=62.89 E-value=73 Score=29.38 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=63.9
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE--EecCCC-----cCc----HHHHHhhcCcEEEEeeCCCCCccCHHHH
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEM--IIPVSA-----HSA----YDKAAQYFNIKLWRVPVDKEFRADVKAI 266 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V--iv~~~~-----h~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~L 266 (438)
.+-|||-.|+..+-.+.+ .|..-..+ +.|... |.. ....++.+|+.++..+.+....-..++|
T Consensus 5 aL~SGGKDS~~Al~~a~~------~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L 78 (223)
T COG2102 5 ALYSGGKDSFYALYLALE------EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEEL 78 (223)
T ss_pred EEEecCcHHHHHHHHHHH------cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHH
Confidence 688999999888877776 55322222 223322 222 3445666799999988876555678888
Q ss_pred HHhhcc-CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675 267 KKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (438)
Q Consensus 267 e~~I~~-~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh 307 (438)
.+++.. +...|+ +|.+.. .+.+-.+|++.|+.+.
T Consensus 79 ~~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~ 116 (223)
T COG2102 79 KEALRRLKVDGIV-------AGAIASEYQKERVERLCEELGLKVY 116 (223)
T ss_pred HHHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe
Confidence 888865 333443 566643 6789999999987654
No 404
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=62.53 E-value=26 Score=33.92 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=49.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCC-CccCHHHHHHhhccCcE-
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTV- 275 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~-~~~d~~~Le~~I~~~t~- 275 (438)
+=.++|..++-+|+.+.. +|.+ -.+++|+..-....+..+.+|.+++.+|..++ ..--.+.+++...+.+.
T Consensus 66 VE~TSGNTGI~LA~vaa~------~Gy~-~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~ 138 (300)
T COG0031 66 VEATSGNTGIALAMVAAA------KGYR-LIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGY 138 (300)
T ss_pred EEcCCChHHHHHHHHHHH------cCCc-EEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCc
Confidence 456788888888888765 4521 24677777777778899999999999997443 22233444445455544
Q ss_pred EEEE
Q 013675 276 LIVG 279 (438)
Q Consensus 276 ~vv~ 279 (438)
++..
T Consensus 139 ~~~~ 142 (300)
T COG0031 139 AVWL 142 (300)
T ss_pred eEch
Confidence 5554
No 405
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=61.32 E-value=12 Score=31.33 Aligned_cols=40 Identities=25% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEe
Q 013675 264 KAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309 (438)
Q Consensus 264 ~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD 309 (438)
+.+++.+..++-+++++.+. .+-+++.++|+++++++..=
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~------~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGL------EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---------HHHHHHHHHCT--EEEE
T ss_pred HHHHHHhCCCCCEEEEECcC------CCCHHHHHHHHHhCCcEEEc
Confidence 44555556688888888875 57899999999999997653
No 406
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=60.19 E-value=15 Score=32.26 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=38.0
Q ss_pred CHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEecccc
Q 013675 262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLG 313 (438)
Q Consensus 262 d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~g 313 (438)
|.++++++++.+...+++- +|.+.+++++.+++++.| +.+|+|-..|
T Consensus 12 ~~~~le~~les~~~~vflL-----~~~i~~ik~ivk~lK~~gK~vfiHvDLv~G 60 (181)
T COG1954 12 DNKDLEKALESESQYVFLL-----TGHILNIKEIVKKLKNRGKTVFIHVDLVEG 60 (181)
T ss_pred hHHHHHHHhcCCCeEEEEE-----echhhhHHHHHHHHHhCCcEEEEEeHHhcc
Confidence 6788999999886655543 567889999999999987 5799998865
No 407
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=60.14 E-value=1e+02 Score=29.16 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=42.9
Q ss_pred CcCcHHHHHhhcCcEEEEee----CC-CCCccCHHHHHHhh---cc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 013675 235 AHSAYDKAAQYFNIKLWRVP----VD-KEFRADVKAIKKYI---NR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTC 305 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~----~~-~~~~~d~~~Le~~I---~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~ 305 (438)
.|.++.-.++.+|++.+.+. .. ++....+.++.+.+ .+ +..+|+ ..++.+. ...+.|.+++++.|+.
T Consensus 159 ~H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if-~e~~~~~---k~~~~l~~la~~~~~~ 234 (264)
T cd01020 159 TEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALI-VNPQQAS---SATTNITGLAKRSGVP 234 (264)
T ss_pred eCchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEE-eCCCCCc---HHHHHHHHHHHHcCCC
Confidence 68999999999999876431 11 24555665555554 44 345554 4444322 2245666789999987
Q ss_pred EE
Q 013675 306 LH 307 (438)
Q Consensus 306 lh 307 (438)
+.
T Consensus 235 v~ 236 (264)
T cd01020 235 VV 236 (264)
T ss_pred EE
Confidence 63
No 408
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=56.19 E-value=1.9e+02 Score=27.59 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=42.2
Q ss_pred CCcCcHHHHHhhcCcEEEEee-CCCCCccCHHHHHHhh---cc-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 234 SAHSAYDKAAQYFNIKLWRVP-VDKEFRADVKAIKKYI---NR-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 234 ~~h~s~~~a~~~~Gi~v~~v~-~~~~~~~d~~~Le~~I---~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
..|.++.-.++.+|+++..+. ..++....+.+|.+.+ .+ +.++|+. .++.+. +.+..++++.|+.+.
T Consensus 176 ~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~-e~~~~~------~~~~~la~~~g~~v~ 247 (282)
T cd01017 176 TQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFF-EENASS------KIAETLAKETGAKLL 247 (282)
T ss_pred EecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEE-eCCCCh------HHHHHHHHHcCCcEE
Confidence 468888889999999987653 3334556666665555 43 4555544 444433 344557888888754
No 409
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=54.87 E-value=56 Score=28.56 Aligned_cols=78 Identities=15% Similarity=0.016 Sum_probs=54.1
Q ss_pred eEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 228 ~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
+++....++..+.+++...|++++...=+.|-.+-+++++-+-+++.-.+++..+.. |+..+++-++++|..++
T Consensus 60 R~Y~~a~a~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~------DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 60 KVLLNQYASDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA------DFLPVINKAKENGKETI 133 (160)
T ss_pred EEEechhccHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccH------hHHHHHHHHHHCCCEEE
Confidence 345554556667888888899877554333455666777776666666666666544 78888899999999988
Q ss_pred Eecc
Q 013675 308 VDLC 311 (438)
Q Consensus 308 VD~a 311 (438)
+=+.
T Consensus 134 v~g~ 137 (160)
T TIGR00288 134 VIGA 137 (160)
T ss_pred EEeC
Confidence 7664
No 410
>smart00642 Aamy Alpha-amylase domain.
Probab=52.95 E-value=13 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 284 FPHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 284 ~~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
...|..++++++.+-||++|+.+++|.+.
T Consensus 64 ~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 64 PRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 35688999999999999999999999884
No 411
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=52.91 E-value=1e+02 Score=25.11 Aligned_cols=60 Identities=12% Similarity=-0.053 Sum_probs=37.9
Q ss_pred cCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEecCC--CCCccccCHHHHHHHHHHcCCeEEE
Q 013675 246 FNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGSAPG--FPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 246 ~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~~~~--~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
.|+++..|++.+ ++. .++.+.|.....-+++..++ ...+...|...|.+.|-++++++..
T Consensus 44 ~Gi~v~~vk~~~~~g~---~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 44 TGLTVNRMKSGPLGGD---QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hCCcEEEEecCCCCch---hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 478777775532 343 34555565554444444454 3333366789999999999999764
No 412
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.42 E-value=46 Score=30.71 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=46.3
Q ss_pred HHHHHhhcCcEEEEe-eCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 239 YDKAAQYFNIKLWRV-PVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v-~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
+.++++.+|.++..+ +...+..--.+.+++++..++.+|+++.... +....+.+-|++.|++++.
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCceEEE
Confidence 456777789998886 5554555567788888888888888666543 2345666778889999764
No 413
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=52.16 E-value=1.1e+02 Score=30.76 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=51.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEE
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLI 277 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~v 277 (438)
+-.++|..+.-+|..+.. .|++ -.|++|...-..-....+.+|.+++.++...+..-..+..++...+++..+
T Consensus 115 V~aSsGN~G~alA~~a~~------~G~~-~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~ 187 (368)
T PLN02556 115 IEPTSGNMGISLAFMAAM------KGYK-MILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAF 187 (368)
T ss_pred EEeCCchHHHHHHHHHHH------cCCC-EEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCC
Confidence 556788888888877754 5542 467788776677778899999999988743321122344444444444444
Q ss_pred EEecCCCCC
Q 013675 278 VGSAPGFPH 286 (438)
Q Consensus 278 v~~~~~~~t 286 (438)
.+...+||.
T Consensus 188 ~~~q~~np~ 196 (368)
T PLN02556 188 MLQQFSNPA 196 (368)
T ss_pred ccCCCCCHH
Confidence 444444443
No 414
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=51.80 E-value=78 Score=28.88 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=45.1
Q ss_pred EecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 230 iv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
++.........+.++..|++++..+.+ |.+.|.+++..-..+++++.+.+ ....+--..+.+.|++.|+..++
T Consensus 27 ~l~R~~~~~~~~~l~~~g~~vv~~d~~-----~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 27 ALVRDPSSDRAQQLQALGAEVVEADYD-----DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp EEESSSHHHHHHHHHHTTTEEEES-TT------HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred EEEeccchhhhhhhhcccceEeecccC-----CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccccceEE
Confidence 334434333445556679998877665 89999999986444444444333 33444467899999999987665
No 415
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=50.86 E-value=85 Score=30.27 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=54.2
Q ss_pred CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccCcEEEEEe-cCCCCCccccCHHHHHHHHHHcCC
Q 013675 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRNTVLIVGS-APGFPHGIIDPIQELGELALSHGT 304 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~t~~vv~~-~~~~~tG~iddi~~I~~la~~~~i 304 (438)
|.|+++++-+. .+....++++...+.+.+ ++.-..+.+.+.+.+.-.++++| +|. -+..||-..+.+.|++.|+
T Consensus 39 DvI~~edtr~t--~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGd--P~I~dpg~~Lv~~~~~~gi 114 (287)
T PRK14994 39 DLIAAEDTRHT--GLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGT--PLINDPGYHLVRTCREAGI 114 (287)
T ss_pred CEEEEeCCcch--HHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCC--CceeCCHHHHHHHHHHCCC
Confidence 67777777665 446677777555555543 44344455666666555556665 553 3688999999999999998
Q ss_pred eE-EEecccc
Q 013675 305 CL-HVDLCLG 313 (438)
Q Consensus 305 ~l-hVD~a~g 313 (438)
.+ ++-|+.+
T Consensus 115 ~v~vIPGiSA 124 (287)
T PRK14994 115 RVVPLPGPCA 124 (287)
T ss_pred CEEEeCCHHH
Confidence 75 4555543
No 416
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=50.60 E-value=2.2e+02 Score=27.37 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=40.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~ 256 (438)
+-.++|..+.-+|..+.+ .|++ -.|++|...-..-....+.+|.+++.++-+
T Consensus 61 v~aSsGN~g~alA~~a~~------~Gl~-~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 61 VEPTSGNTGIALAMVAAA------RGYK-LILTMPETMSIERRKLLKAYGAELVLTPGA 112 (298)
T ss_pred EEeCCChhHHHHHHHHHH------cCCe-EEEEeCCccCHHHHHHHHHcCCEEEEECCC
Confidence 566788888888877765 5542 478888887777788899999999988753
No 417
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=50.46 E-value=38 Score=27.44 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 258 EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 258 ~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+.+++++++++.+.+++-.+++-.+. +|.+.=.++..+++++.++-+++--.
T Consensus 46 SHkl~~eEle~~lee~~E~ivvGTG~--~G~l~l~~ea~e~~r~k~~~vi~~pT 97 (121)
T COG1504 46 SHKLALEELEELLEEGPEVIVVGTGQ--SGMLELSEEAREFFRKKGCEVIELPT 97 (121)
T ss_pred ccccCHHHHHHHHhcCCcEEEEecCc--eeEEEeCHHHHHHHHhcCCeEEEeCC
Confidence 46799999999999998776655554 69998888999999999987776433
No 418
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.90 E-value=79 Score=27.04 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=55.8
Q ss_pred CCeEEecCCC---cCc----HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHH
Q 013675 226 RPEMIIPVSA---HSA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGEL 298 (438)
Q Consensus 226 ~~~Viv~~~~---h~s----~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~l 298 (438)
+++|++.... |-. ...+.+-.|++++..+.-. .--+.+..+++++.-.|.+|.-. -|..+.++++.+.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~---tp~e~v~aA~~~dv~vIgvSsl~--g~h~~l~~~lve~ 86 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ---TPEEAVRAAVEEDVDVIGVSSLD--GGHLTLVPGLVEA 86 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC---CHHHHHHHHHhcCCCEEEEEecc--chHHHHHHHHHHH
Confidence 4778776554 544 3445555599998877643 22566677788877777666543 4667789999999
Q ss_pred HHHcCCeEEEeccccchhhh
Q 013675 299 ALSHGTCLHVDLCLGGFVLP 318 (438)
Q Consensus 299 a~~~~i~lhVD~a~gg~~~p 318 (438)
++++|.-=+. .++|+.+|
T Consensus 87 lre~G~~~i~--v~~GGvip 104 (143)
T COG2185 87 LREAGVEDIL--VVVGGVIP 104 (143)
T ss_pred HHHhCCcceE--EeecCccC
Confidence 9999864222 34444443
No 419
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=49.69 E-value=2.8e+02 Score=27.70 Aligned_cols=77 Identities=14% Similarity=-0.061 Sum_probs=47.1
Q ss_pred CcCcHHHHHhhcCcEEEEeeCCCCCc-cCHHHHHHhhc-----cCcEEEEEecCCC--CCc--cccCHHHHHHHHHHcCC
Q 013675 235 AHSAYDKAAQYFNIKLWRVPVDKEFR-ADVKAIKKYIN-----RNTVLIVGSAPGF--PHG--IIDPIQELGELALSHGT 304 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~~~~~~~-~d~~~Le~~I~-----~~t~~vv~~~~~~--~tG--~iddi~~I~~la~~~~i 304 (438)
.+..+.+.+...|..| .+. +|. .++++++.+++ .+..++++-.+++ |+- .--|+..|..+-+++++
T Consensus 213 ~n~~LL~~~a~~gkPV-ilk---~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~ 288 (360)
T PRK12595 213 QNFELLKAAGRVNKPV-LLK---RGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHL 288 (360)
T ss_pred cCHHHHHHHHccCCcE-EEe---CCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCC
Confidence 3555556555555433 232 344 58888887774 2344444322433 322 11378999999888999
Q ss_pred eEEEeccccch
Q 013675 305 CLHVDLCLGGF 315 (438)
Q Consensus 305 ~lhVD~a~gg~ 315 (438)
++.+|..++++
T Consensus 289 PV~~d~~Hs~G 299 (360)
T PRK12595 289 PVMVDVTHSTG 299 (360)
T ss_pred CEEEeCCCCCc
Confidence 99999988654
No 420
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=48.77 E-value=1.5e+02 Score=27.21 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=53.4
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE--E-e--cC-----CCc----CcHHHHHhhcCcEEEEeeCCCCCccCH
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEM--I-I--PV-----SAH----SAYDKAAQYFNIKLWRVPVDKEFRADV 263 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V--i-v--~~-----~~h----~s~~~a~~~~Gi~v~~v~~~~~~~~d~ 263 (438)
+..|||-.|..++..+.. .| .+| + . +. ..| ....+.|+.+|+.++.++++.......
T Consensus 2 vl~SGGkDS~~al~~a~~------~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~ 72 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALE------EG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEV 72 (218)
T ss_pred eeecCcHHHHHHHHHHHH------cC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHH
Confidence 577999999998877654 45 333 2 2 11 112 234567788899988888763112233
Q ss_pred HHHHHhhc----cCcEEEEEecCCCCCcccc---CHHHHHHHHHHcCCeEEE
Q 013675 264 KAIKKYIN----RNTVLIVGSAPGFPHGIID---PIQELGELALSHGTCLHV 308 (438)
Q Consensus 264 ~~Le~~I~----~~t~~vv~~~~~~~tG~id---di~~I~~la~~~~i~lhV 308 (438)
++|.+++. .....|+ +|.+. +-..+.++|.+.|+.++.
T Consensus 73 ~~l~~~l~~~~~~g~~~vv-------~G~i~sd~~~~~~e~v~~~~gl~~~~ 117 (218)
T TIGR03679 73 EDLKGALKELKREGVEGIV-------TGAIASRYQKSRIERICEELGLKVFA 117 (218)
T ss_pred HHHHHHHHHHHHcCCCEEE-------ECCcccHhHHHHHHHHHHhCCCeEEe
Confidence 34444443 2333333 34332 245666788887776543
No 421
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=48.07 E-value=1.5e+02 Score=30.54 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec-CCCcC---cHHHHH
Q 013675 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP-VSAHS---AYDKAA 243 (438)
Q Consensus 168 ~~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~-~~~h~---s~~~a~ 243 (438)
...++++.+.+.+.+.+..+.. +|++.|||-.|-..+..+.+.. . ...+.--.+-.+ ..... ...+++
T Consensus 234 ~~e~l~~~l~~aV~~r~~~~~~------vg~~LSGGlDSs~iaa~a~~~~-~-~~~~~~~t~~~~~~~~~~E~~~A~~vA 305 (467)
T TIGR01536 234 LVDELRSLLEDAVKRRLVADVP------VGVLLSGGLDSSLVAAIARREA-P-RGPVHTFSIGFEGSPDFDESPYARKVA 305 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCc------eEEEecCChhHHHHHHHHHHhc-C-CCCceEEEEecCCCCCCChHHHHHHHH
Confidence 3455666666666666554332 6799999999988876664421 0 001000011122 12222 356678
Q ss_pred hhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 244 QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 244 ~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+.+|++.+.+.++++. -.+.+++.+... ..|... ....+.-.+.+.++++|+.++.+|-
T Consensus 306 ~~lg~~~~~i~~~~~~--~~~~~~~~v~~~------~~p~~~-~~~~~~~~l~~~a~~~G~~vlltG~ 364 (467)
T TIGR01536 306 DHLGTEHHEVLFSVEE--GLDALPEVIYHL------EDPTTI-RASIPLYLLSKLAREDGVKVVLSGE 364 (467)
T ss_pred HHhCCcCeEEECCHHH--HHHHHHHHHHhh------CCCCCC-chHHHHHHHHHHHHhcCCEEEEecC
Confidence 8889988888775311 122333333210 122111 1222455788899999998887765
No 422
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.70 E-value=2.6e+02 Score=26.75 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=42.4
Q ss_pred CcCcHHHHHhhcCcEEEEe-eCCCCCccCHHHHHHhhc---c-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 235 AHSAYDKAAQYFNIKLWRV-PVDKEFRADVKAIKKYIN---R-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v-~~~~~~~~d~~~Le~~I~---~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
.|.+|.-.++.+|+++..+ ....+....+.+|.+.++ + +..+|+.. ++. +-+.+..|+++.|+.+.
T Consensus 185 ~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e-~~~------~~~~~~~ia~~~g~~v~ 255 (286)
T cd01019 185 FHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAE-PQF------HPKIAETLAEGTGAKVG 255 (286)
T ss_pred ecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec-CCC------ChHHHHHHHHhcCceEE
Confidence 6888999999999987654 333456677776666554 3 45666543 332 22566677777787653
No 423
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=46.32 E-value=13 Score=35.34 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 282 ~~~~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
++...|+.++++++.+.||++|+.|++|.+.
T Consensus 44 vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 44 VDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp ESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhhhhhhhhccccccceEEEeeec
Confidence 4556799999999999999999999999885
No 424
>PRK05638 threonine synthase; Validated
Probab=45.81 E-value=2.4e+02 Score=29.02 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=38.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+..+|..+.+ .|++ -.|++|...-.......+.+|.+++.++-
T Consensus 116 v~aSsGN~g~alA~~aa~------~G~~-~~i~vp~~~~~~k~~~~~~~GA~vi~v~~ 166 (442)
T PRK05638 116 IVASDGNAAASVAAYSAR------AGKE-AFVVVPRKVDKGKLIQMIAFGAKIIRYGE 166 (442)
T ss_pred EEeCCChHHHHHHHHHHH------cCCC-EEEEEeCCCCHHHHHHHHhcCcEEEEECC
Confidence 556777778777777765 4532 36788887766777888899999999863
No 425
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=45.11 E-value=3.2e+02 Score=27.00 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=63.4
Q ss_pred ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHH-------
Q 013675 196 CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKK------- 268 (438)
Q Consensus 196 ~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~------- 268 (438)
.|+++.|.|.+.+.+..... ...+|+.++.++..-+. . .+-.+...++.-+-..++++|.+
T Consensus 97 D~~vSgg~Tga~l~~a~~il---g~~~Gi~r~a~~~~~p~---~------~~~~~~l~D~gan~~p~~e~L~~~A~~~a~ 164 (334)
T PRK05331 97 DACVSAGNTGALMAAALFVL---GRLPGIDRPALAAILPT---V------KGGGTVLLDLGANVDCKPEHLVQFAVMGSV 164 (334)
T ss_pred CEEEeCCcHHHHHHHHHHHc---ccCCCCCceEEEEEeee---c------CCCeEEEEeCeEcCCCCHHHHHHHHHHHHH
Confidence 33676677766665544432 23467666644222111 0 12223333332233334444422
Q ss_pred ----hhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeC
Q 013675 269 ----YIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343 (438)
Q Consensus 269 ----~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s 343 (438)
.+. ++|++-+++.++-..=..+-..+-.+++++.+..+..||-. ..-+.....+|++++|
T Consensus 165 ~a~~~~Gi~~PrVAlLn~Gse~~kg~~~~~eA~~Ll~~~~~~l~f~G~i---------------e~~dl~~g~~DVvV~D 229 (334)
T PRK05331 165 YAEAVLGIENPRVGLLNIGEEEIKGNELVKEAYELLKAADSSINFIGNV---------------EGRDILKGTADVVVCD 229 (334)
T ss_pred HHHHHcCCCCCeEEEEeCCCCCCCCCHHHHHHHHHHHccCCCceEEeec---------------cCCCcCCCCCCEEEEC
Confidence 222 35777777776554434455777788887644456667652 1233344457999998
Q ss_pred CC
Q 013675 344 VH 345 (438)
Q Consensus 344 ~h 345 (438)
+.
T Consensus 230 Gf 231 (334)
T PRK05331 230 GF 231 (334)
T ss_pred Cc
Confidence 63
No 426
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=44.33 E-value=1.5e+02 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=40.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~ 256 (438)
+..++|..+..+|..+.+ .|++ -.|++|......-.+..+.+|.+++.++-+
T Consensus 63 v~aSsGN~g~alA~~a~~------~G~~-~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~ 114 (290)
T TIGR01138 63 IEATSGNTGIALAMIAAL------KGYR-MKLLMPDNMSQERKAAMRAYGAELILVTKE 114 (290)
T ss_pred EEECCChHHHHHHHHHHH------cCCe-EEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 567888888888877755 4542 467888887777888999999999998754
No 427
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.07 E-value=2.9e+02 Score=26.19 Aligned_cols=76 Identities=8% Similarity=-0.152 Sum_probs=45.9
Q ss_pred cCcHHHHHhhcCcEEEEeeCCCCCc-cCHHHHHHhhcc-----CcEEEEEecCCCCC-cc---ccCHHHHHHHHHHcCCe
Q 013675 236 HSAYDKAAQYFNIKLWRVPVDKEFR-ADVKAIKKYINR-----NTVLIVGSAPGFPH-GI---IDPIQELGELALSHGTC 305 (438)
Q Consensus 236 h~s~~~a~~~~Gi~v~~v~~~~~~~-~d~~~Le~~I~~-----~t~~vv~~~~~~~t-G~---iddi~~I~~la~~~~i~ 305 (438)
+..+.+.+...|..| .+. +|. .++++++.+++. +..++++..+++.+ +. .-|+..|..+.++++++
T Consensus 121 n~~LL~~~a~~gkPV-ilk---~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~p 196 (260)
T TIGR01361 121 NFELLKEVGKQGKPV-LLK---RGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLP 196 (260)
T ss_pred CHHHHHHHhcCCCcE-EEe---CCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCC
Confidence 445556555555433 232 333 377777777642 33444433334222 32 35689999999889999
Q ss_pred EEEeccccch
Q 013675 306 LHVDLCLGGF 315 (438)
Q Consensus 306 lhVD~a~gg~ 315 (438)
+..|..++++
T Consensus 197 V~~ds~Hs~G 206 (260)
T TIGR01361 197 IIVDPSHAAG 206 (260)
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 428
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=43.97 E-value=2.5e+02 Score=27.33 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=67.2
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC--cC--cHHHHHhhcCcEEEEeeCCCCC--ccCHHHHHHhhc
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA--HS--AYDKAAQYFNIKLWRVPVDKEF--RADVKAIKKYIN 271 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~--h~--s~~~a~~~~Gi~v~~v~~~~~~--~~d~~~Le~~I~ 271 (438)
++|.||.+||.....++... +.|.+ ...++-... +. ...--.+.+|..++.++...+. ....+.+.+.+.
T Consensus 67 lvT~GgiQSNh~r~tAavA~---~lGl~-~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~ 142 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAA---KLGLK-CVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVR 142 (323)
T ss_pred EEEecccchhHHHHHHHHHH---hcCCc-EEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHH
Confidence 89999999999877766532 24432 223333222 11 1223345669999998876555 444556666555
Q ss_pred cC--cEEEEEecCCCCCccc---cCHHHHHHHHHH-cCCeEEEeccccch
Q 013675 272 RN--TVLIVGSAPGFPHGII---DPIQELGELALS-HGTCLHVDLCLGGF 315 (438)
Q Consensus 272 ~~--t~~vv~~~~~~~tG~i---ddi~~I~~la~~-~~i~lhVD~a~gg~ 315 (438)
.+ .-.++...+.+|.|.. .-..||.+-+++ ..+-.+|.++-+++
T Consensus 143 ~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~g 192 (323)
T COG2515 143 KQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGG 192 (323)
T ss_pred hcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcc
Confidence 42 3355555667885554 556677777776 44446666665443
No 429
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=43.75 E-value=19 Score=37.53 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=27.8
Q ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 282 ~~~~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
+....|+.++++++++.||++|+.|++|.+.
T Consensus 73 id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 73 VRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred cCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3456899999999999999999999999984
No 430
>PLN02565 cysteine synthase
Probab=43.25 E-value=82 Score=30.87 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=40.1
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~ 256 (438)
+-.++|..+.-+|..+.. .|++ -.|++|..+-..-...++.+|.+++.++.+
T Consensus 71 v~aSsGN~g~alA~~a~~------~G~~-~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~ 122 (322)
T PLN02565 71 IEPTSGNTGIGLAFMAAA------KGYK-LIITMPASMSLERRIILLAFGAELVLTDPA 122 (322)
T ss_pred EEECCChHHHHHHHHHHH------cCCe-EEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Confidence 556888888888887755 4532 367888888888888999999999988643
No 431
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=43.01 E-value=3.2e+02 Score=26.51 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=65.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC--CcCc--HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS--AHSA--YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN 273 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~--~h~s--~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~ 273 (438)
++|.+-|.+....+..+++ +|.+ -+|++.++ .+.. ..+..+..|+.+..|+- .++...+++-
T Consensus 123 IlTh~~S~~v~~~l~~A~~-----~~k~-~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D--------sa~~~~~~~v 188 (301)
T COG1184 123 ILTHSFSKTVLEVLKTAAD-----RGKR-FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD--------SAVGAFMSRV 188 (301)
T ss_pred EEEecCcHHHHHHHHHhhh-----cCCc-eEEEEEcCCCcchHHHHHHHHHHcCCceEEEec--------hHHHHHHHhC
Confidence 8999999999999988885 3311 25666543 2322 44556666888877752 3444555555
Q ss_pred cEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675 274 TVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (438)
Q Consensus 274 t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD 309 (438)
.+++++...-...|.+-. -..|+..||+.+.|+.|=
T Consensus 189 d~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 189 DKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred CEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEE
Confidence 677777776666665533 357889999999998763
No 432
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=42.56 E-value=1.2e+02 Score=27.71 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=5.5
Q ss_pred HHhhcCcEEEEee
Q 013675 242 AAQYFNIKLWRVP 254 (438)
Q Consensus 242 a~~~~Gi~v~~v~ 254 (438)
+++.+|.++...+
T Consensus 24 ~~~~~g~~~~~~~ 36 (266)
T cd06282 24 EARAAGYSLLLAT 36 (266)
T ss_pred HHHHCCCEEEEee
Confidence 3333444444433
No 433
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=42.55 E-value=1.7e+02 Score=24.92 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=39.0
Q ss_pred Hhhc-CcEEEEeeCCC-CCccCHHHHHHhhccC-cEEEEEec-CCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 243 AQYF-NIKLWRVPVDK-EFRADVKAIKKYINRN-TVLIVGSA-PGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 243 ~~~~-Gi~v~~v~~~~-~~~~d~~~Le~~I~~~-t~~vv~~~-~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
.+.. |+++..|-..+ .|. .++.+.|..+ ..+|+.+. |..+.+...|...|.+.|-++++++...-.
T Consensus 45 L~~~~Gi~v~~vi~~~~gg~---~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 45 IQEATGLDVTRLLSGPLGGD---QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred HHhccCCeeEEEEcCCCCCc---hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 3344 77776662122 232 3355555544 44444332 244444466788999999999999886644
No 434
>PRK08329 threonine synthase; Validated
Probab=42.08 E-value=1.8e+02 Score=28.82 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=37.5
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+..+|..+.+ .|++ -.|++|...-..-....+.+|.+++.++-
T Consensus 108 v~aSsGN~g~alA~~aa~------~G~~-~~v~vp~~~~~~k~~~~~~~GA~v~~v~~ 158 (347)
T PRK08329 108 VIDSSGNAALSLALYSLS------EGIK-VHVFVSYNASKEKISLLSRLGAELHFVEG 158 (347)
T ss_pred EEECCCcHHHHHHHHHHH------cCCc-EEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 566777888877777765 4532 46788877666667788889999999874
No 435
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=41.94 E-value=2.6e+02 Score=25.11 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=54.6
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe--cCCC-----c----CcHHHHHhhcCcEEEEeeCCCCCccCHHHH
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMII--PVSA-----H----SAYDKAAQYFNIKLWRVPVDKEFRADVKAI 266 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv--~~~~-----h----~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~L 266 (438)
+..|||-.|..++..+.. .|..---+++ +... | ....+.|+.+|+.+..++++.+..--.+++
T Consensus 4 v~~SGGkDS~~al~~a~~------~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l 77 (194)
T cd01994 4 ALISGGKDSCYALYRALE------EGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDL 77 (194)
T ss_pred EEecCCHHHHHHHHHHHH------cCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHH
Confidence 678999999998887765 3421111111 1111 1 124567788899888887643211112444
Q ss_pred HHhhcc----CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675 267 KKYINR----NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (438)
Q Consensus 267 e~~I~~----~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh 307 (438)
.+.+.+ ....|+ +|.+++ -..+-++|++.|+..+
T Consensus 78 ~~~l~~~~~~g~~~vv-------~G~i~sd~~~~~~e~~~~~~gl~~~ 118 (194)
T cd01994 78 KELLRKLKEEGVDAVV-------FGAILSEYQRTRVERVCERLGLEPL 118 (194)
T ss_pred HHHHHHHHHcCCCEEE-------ECccccHHHHHHHHHHHHHcCCEEE
Confidence 444432 122222 565543 3578889999887654
No 436
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=40.60 E-value=11 Score=33.51 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=34.7
Q ss_pred CHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEecccc
Q 013675 262 DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG--TCLHVDLCLG 313 (438)
Q Consensus 262 d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~--i~lhVD~a~g 313 (438)
+.++++++++.+...+++. +|.+..++.+.+.++++| +.+|+|-+-|
T Consensus 8 ~~~~l~~al~s~~~~vfLl-----~g~I~~l~~~v~~~~~~gK~vfVHiDli~G 56 (175)
T PF04309_consen 8 DEEDLEKALESDVEVVFLL-----TGDIGNLKDIVKRLKAAGKKVFVHIDLIEG 56 (175)
T ss_dssp CCCCCCCCCCSSSSEEEE------SEECCCHHHHHHHHHHTT-EEEEECCGEET
T ss_pred CHHHHHHHHcCCCCEEEEE-----cCcHHHHHHHHHHHHHcCCEEEEEehhcCC
Confidence 3456677777665555544 478899999999999998 4689998754
No 437
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.32 E-value=3.6e+02 Score=26.23 Aligned_cols=66 Identities=12% Similarity=0.235 Sum_probs=42.8
Q ss_pred CcCcHHHHHhhcCcEEEE-eeCCCCCccCHHHHHHhhc---c-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 235 AHSAYDKAAQYFNIKLWR-VPVDKEFRADVKAIKKYIN---R-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~-v~~~~~~~~d~~~Le~~I~---~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
.|.+|.-.++.+|+++.. +...++....+.++.+.++ + +.++|+.. ++++. +.+..++++.|+.+.
T Consensus 209 ~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e-~~~~~------~~~~~la~e~g~~v~ 279 (311)
T PRK09545 209 FHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAE-PQFRP------AVIESVAKGTSVRMG 279 (311)
T ss_pred ECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCh------HHHHHHHHhcCCeEE
Confidence 788999999999998754 3334455666777666654 3 45666544 43322 455677778887753
No 438
>PRK11761 cysM cysteine synthase B; Provisional
Probab=40.09 E-value=2.4e+02 Score=27.13 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=40.1
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+.-+|..+.. .|+ +-.|++|+..-....+..+.+|.+++.++.
T Consensus 67 v~aSsGN~g~alA~~a~~------~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 67 IEATSGNTGIALAMIAAI------KGY-RMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred EEeCCChHHHHHHHHHHH------cCC-CEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 667888888888887755 554 236788887777788899999999999985
No 439
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=39.80 E-value=22 Score=37.60 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=29.5
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 281 ~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
.++...|..++++++.+.||++||-|++|.++.
T Consensus 151 ~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 151 APHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred ccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 456678999999999999999999999998864
No 440
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.63 E-value=1.6e+02 Score=22.91 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=41.5
Q ss_pred cCcHHHHHhhcCcEEEEeeCCCCCccCHH--HHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 236 HSAYDKAAQYFNIKLWRVPVDKEFRADVK--AIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 236 h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~--~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
-..+.+.++-+|.+.+.. ..++..... .+++.+.+ +.+|++......++. ...+.+.|+++|++++.
T Consensus 12 ~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~-aD~VIv~t~~vsH~~---~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKK-ADLVIVFTDYVSHNA---MWKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCC-CCEEEEEeCCcChHH---HHHHHHHHHHcCCcEEE
Confidence 345777888899998888 322333333 48887754 334443333222332 56788899999998754
No 441
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=39.47 E-value=1.7e+02 Score=27.13 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCC------CCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGI------TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN 271 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~------~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~ 271 (438)
+..|||-.|...+.++..+ ... .++ ..+........+......|+.+|+.++.+.......--.+++.+.+.
T Consensus 5 vl~SGGKDS~lAl~~~~~~-~~V-~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~ 82 (222)
T TIGR00289 5 VLYSGGKDSILALYKALEE-HEV-ISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLG 82 (222)
T ss_pred EEecCcHHHHHHHHHHHHc-Cee-EEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHH
Confidence 6789999999998888764 110 000 00111111111233567888889998888765433334555555554
Q ss_pred c-CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675 272 R-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (438)
Q Consensus 272 ~-~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh 307 (438)
+ ....|+ +|.++- -..+.++|++.|+..+
T Consensus 83 ~~gv~~vv-------~GdI~s~~qr~~~e~vc~~~gl~~~ 115 (222)
T TIGR00289 83 ELDVEALC-------IGAIESNYQKSRIDKVCRELGLKSI 115 (222)
T ss_pred HcCCCEEE-------ECccccHHHHHHHHHHHHHcCCEEe
Confidence 3 333333 566653 4678888998887643
No 442
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=39.37 E-value=1.2e+02 Score=28.96 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcC-c---HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc-
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHS-A---YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR- 272 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~-s---~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~- 272 (438)
++|.|-|..+..++..+.. .| .+-+|++.+.... . +.+.....|+++..++- .++-..+..
T Consensus 111 ILT~~~S~~v~~~l~~a~~-----~~-~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d--------~~~~~~m~~~ 176 (282)
T PF01008_consen 111 ILTHGYSSTVERFLLSAKK-----KG-KKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPD--------SAVGYVMPRD 176 (282)
T ss_dssp EEEES--SHHHHHHHHHHH-----TT-EEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-G--------GGHHHHHHCT
T ss_pred EEEeCCchHHHHHHHHHHH-----cC-CeEEEEEccCCcchhhhhHHHHhhhcceeEEEEec--------hHHHHHHHHh
Confidence 7888888887777777553 23 1146777665422 1 23334445999988873 334444444
Q ss_pred CcEEEEEecCCCCCcc-ccC--HHHHHHHHHHcCCeEEEecc
Q 013675 273 NTVLIVGSAPGFPHGI-IDP--IQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 273 ~t~~vv~~~~~~~tG~-idd--i~~I~~la~~~~i~lhVD~a 311 (438)
-.+++++...-...|. +.. -..++-+|++++++++|=+-
T Consensus 177 vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 177 VDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp ESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--
T ss_pred CCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcc
Confidence 3456666655566674 444 35788899999999887543
No 443
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=38.35 E-value=33 Score=36.79 Aligned_cols=76 Identities=16% Similarity=0.004 Sum_probs=46.5
Q ss_pred CcCcHHHHHhhcCcEEEEeeC-CCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 235 AHSAYDKAAQYFNIKLWRVPV-DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~~-~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+.....+..+.+|++.+++.. -++|.+.-.++-...+.+.-..- .......|+.+|++++.+.|+++|+.++.|-+
T Consensus 75 ~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 75 ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred cChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455677778888988777643 23332222111111111111111 13344589999999999999999999999976
No 444
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=37.45 E-value=3.3e+02 Score=26.48 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.5
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+..+|..+.. .|++ -.|++|...-..-....+.+|.+++.++-
T Consensus 55 v~aSsGN~g~alA~~a~~------~G~~-~~iv~p~~~~~~k~~~l~~~GA~v~~~~~ 105 (316)
T cd06448 55 VCSSGGNAGLAAAYAARK------LGVP-CTIVVPESTKPRVVEKLRDEGATVVVHGK 105 (316)
T ss_pred EEeCCcHHHHHHHHHHHH------cCCC-EEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 445666777766665544 4532 36788887666677888899999998864
No 445
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=37.42 E-value=2e+02 Score=26.64 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEE---ecCC-----Cc----CcHHHHHhhcCcEEEEeeCCCCCccCHHH
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMI---IPVS-----AH----SAYDKAAQYFNIKLWRVPVDKEFRADVKA 265 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Vi---v~~~-----~h----~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~ 265 (438)
+.-|||-.++....++..+ .. ...+ ++.. .| .-....++.+|+.++.++.+....--.++
T Consensus 5 ~l~SGGKDS~~al~~a~~~-~~-------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKE-HE-------VISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred EEecCcHHHHHHHHHHHHh-Ce-------eEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 6789999999998888764 21 1111 2222 12 22556778889998887765433334566
Q ss_pred HHHhhcc-CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675 266 IKKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (438)
Q Consensus 266 Le~~I~~-~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh 307 (438)
|++++.+ ....++ +|.++- -..+-++|.+.|+..+
T Consensus 77 l~~~l~~~gv~~vv-------~GdI~s~~qr~~~e~v~~~lgl~~~ 115 (223)
T TIGR00290 77 LKGILHTLDVEAVV-------FGAIYSEYQKTRIERVCRELGLKSF 115 (223)
T ss_pred HHHHHHHcCCCEEE-------ECCcccHHHHHHHHHHHHhcCCEEe
Confidence 7666654 322333 566643 4677888888887643
No 446
>PLN00011 cysteine synthase
Probab=37.35 E-value=2.8e+02 Score=27.08 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+.-+|..+.. .|++ -.|++|...-....+..+.+|.+++.++-
T Consensus 73 v~aSsGN~g~alA~~a~~------~G~~-~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 123 (323)
T PLN00011 73 IEATAGNTGIGLACIGAA------RGYK-VILVMPSTMSLERRIILRALGAEVHLTDQ 123 (323)
T ss_pred EEeCCChHHHHHHHHHHH------cCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEECC
Confidence 556888888887777655 5542 46788887767788899999999998874
No 447
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=36.99 E-value=3.5e+02 Score=27.49 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=39.9
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..|+|..++-+|..+.+ .|++ -.|++|..+-..-.+..+.+|.+++.++-
T Consensus 138 V~aSsGN~G~alA~~a~~------~G~~-~~IvvP~~~~~~K~~~ira~GAeVv~v~~ 188 (404)
T cd06447 138 AVGSTGNLGLSIGIMAAA------LGFK-VTVHMSADAKQWKKDKLRSKGVTVVEYET 188 (404)
T ss_pred EEECccHHHHHHHHHHHH------cCCC-EEEEECCCCcHHHHHHHHHCCCEEEEECC
Confidence 556888888888877765 4532 46888988888888899999999999873
No 448
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=36.21 E-value=4e+02 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=39.0
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+-.++|..+..+|..+.. .|++ -.|++|...-..-....+.+|.+++.++-
T Consensus 62 v~aSsGN~g~alA~~a~~------~G~~-~~i~vp~~~~~~k~~~~~~~GA~v~~~~~ 112 (299)
T TIGR01136 62 IEATSGNTGIALAMVAAA------KGYK-LILTMPETMSLERRKLLRAYGAELILTPA 112 (299)
T ss_pred EEeCCChHHHHHHHHHHH------cCCc-EEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 567888888877776654 4542 47889988777777889999999998874
No 449
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=35.16 E-value=2.8e+02 Score=25.74 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=56.8
Q ss_pred ceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc---CcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc
Q 013675 196 CGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH---SAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR 272 (438)
Q Consensus 196 ~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h---~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~ 272 (438)
+|+..|||-.|-..+..+.+.. ...+..-.+....... ....++++.+|++.+.+.++ .+++.+.+..
T Consensus 18 v~~~LSGGlDSs~va~~~~~~~---~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~------~~~~~~~~~~ 88 (269)
T cd01991 18 VGVLLSGGLDSSLVAALAARLL---PEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFT------PADLLAALPD 88 (269)
T ss_pred eEEeecccHHHHHHHHHHHHhh---CCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcC------HHHHHHHHHH
Confidence 6799999999998887775531 0101001111121111 22556778889888877764 2333332221
Q ss_pred CcEEEEEecCCCCCc--cccCHHHHHHHHHHcCCeEEEecccc
Q 013675 273 NTVLIVGSAPGFPHG--IIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 273 ~t~~vv~~~~~~~tG--~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
- +.....|.+ ...+.-.+++.++++++.++.+|..|
T Consensus 89 ~-----~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~ 126 (269)
T cd01991 89 V-----IWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGA 126 (269)
T ss_pred H-----HHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCc
Confidence 0 000111122 22356788999999998888776643
No 450
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=34.83 E-value=3.1e+02 Score=26.12 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~ 256 (438)
+..++|..+..+|..+.+ .|++ -.|++|...-..-....+.+|.+++.++-+
T Consensus 57 v~~SsGN~g~alA~~a~~------~G~~-~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~ 108 (291)
T cd01561 57 IEPTSGNTGIGLAMVAAA------KGYR-FIIVMPETMSEEKRKLLRALGAEVILTPEA 108 (291)
T ss_pred EEeCCChHHHHHHHHHHH------cCCe-EEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 556777777777766654 4542 468888877777788899999999988754
No 451
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=34.62 E-value=74 Score=32.11 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=51.7
Q ss_pred EEecCCCcCcHHHHHhhc-CcEEEEeeCCCCCc-cCHHHHHHhhcc---CcEEEEEecCCCCCccccCHHHHHHHHHHcC
Q 013675 229 MIIPVSAHSAYDKAAQYF-NIKLWRVPVDKEFR-ADVKAIKKYINR---NTVLIVGSAPGFPHGIIDPIQELGELALSHG 303 (438)
Q Consensus 229 Viv~~~~h~s~~~a~~~~-Gi~v~~v~~~~~~~-~d~~~Le~~I~~---~t~~vv~~~~~~~tG~iddi~~I~~la~~~~ 303 (438)
-++....|+...|.--.. +-++.+++-.+.+. .+.+.|-+.+.. +..++++|- +.-|.+.+++.+.++|++.|
T Consensus 94 ~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSD--Y~KG~L~~~q~~I~~ar~~~ 171 (467)
T COG2870 94 DLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSD--YAKGVLTNVQKMIDLAREAG 171 (467)
T ss_pred ceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEec--cccccchhHHHHHHHHHHcC
Confidence 355555666654421111 33566666544222 455555555543 345666664 44799999999999999999
Q ss_pred CeEEEecc
Q 013675 304 TCLHVDLC 311 (438)
Q Consensus 304 i~lhVD~a 311 (438)
+++.+|--
T Consensus 172 ~pVLvDPK 179 (467)
T COG2870 172 IPVLVDPK 179 (467)
T ss_pred CcEEECCC
Confidence 99999954
No 452
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=33.92 E-value=90 Score=29.58 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=37.8
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCcc----ccCHHHHHHHHHHcCCeEEEecc
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGI----IDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~----iddi~~I~~la~~~~i~lhVD~a 311 (438)
.+.+-=+++.-|+-. ..-+.+.+++.+.+=..+|+..- .|. ...+++|.+.+++.++++++|+-
T Consensus 73 IKsYsPdLIVHP~l~-~~~av~~i~k~L~RlhavVIGPG----LGRdp~~~k~i~~iley~~~~dvP~VIDaD 140 (306)
T KOG3974|consen 73 IKSYSPDLIVHPVLD-QENAVDIIEKLLQRLHAVVIGPG----LGRDPAILKEIAKILEYLRGKDVPLVIDAD 140 (306)
T ss_pred HhhcCCceeeccccc-CCchHhHHHHHHhheeEEEECCC----CCCCHHHHHHHHHHHHHHhcCCCcEEEcCC
Confidence 344433444445421 11155666666655445554433 455 23377888899999999999976
No 453
>PRK12313 glycogen branching enzyme; Provisional
Probab=33.27 E-value=34 Score=37.01 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.6
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 281 ~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
+++...|+.++++++.+.||++||.|+.|.++.
T Consensus 211 ~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 211 APTSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 345568889999999999999999999998864
No 454
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.91 E-value=1.2e+02 Score=27.91 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeE-EEec
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL-HVDL 310 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l-hVD~ 310 (438)
.++++..|.++..++...+-....+.++..++.++..+++..++. ....++.+.+++.|+++ .+|.
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~-----~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 22 KAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA-----EVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-----hhhHHHHHHHHHcCCCEEEecC
Confidence 455666677776654432222223455555566666666654422 11223334456677763 4443
No 455
>PLN03244 alpha-amylase; Provisional
Probab=32.87 E-value=35 Score=37.50 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=30.3
Q ss_pred ecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 280 SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 280 ~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
-+++...|..++++++.+.||+.||-|+.|-++.
T Consensus 431 FApssRYGTPeDLK~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 431 FAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred cccCcccCCHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3567778999999999999999999999999874
No 456
>PLN02356 phosphateglycerate kinase
Probab=32.56 E-value=1.1e+02 Score=31.17 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 200 t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
.++|..++-+|..+.. .|+ +-.|++|...-..-.+..+.+|.+++.++-
T Consensus 110 aSSGN~g~alA~~aa~------~G~-~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~ 158 (423)
T PLN02356 110 GSAGSTAISLATVAPA------YGC-KCHVVIPDDVAIEKSQILEALGATVERVRP 158 (423)
T ss_pred eCCHHHHHHHHHHHHH------cCC-cEEEEECCCCcHHHHHHHHHcCCEEEEECC
Confidence 5888889888888765 564 246788887777777888999999999863
No 457
>PRK05402 glycogen branching enzyme; Provisional
Probab=32.38 E-value=35 Score=37.62 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 282 PGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 282 ~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
++...|..++++++.+.||++||.|+.|.++.
T Consensus 307 i~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 307 PTSRFGTPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45567888899999999999999999998864
No 458
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=31.91 E-value=2.4e+02 Score=29.22 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=61.2
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh---cCcEEEEeeCCCCCccCHHHHHHhhccCc
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY---FNIKLWRVPVDKEFRADVKAIKKYINRNT 274 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~---~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t 274 (438)
++|.|.+..+...+.-+.+ .|..-..|++..-....-.+.++. .|+++.++-++. +--.+.+-|
T Consensus 363 iltyg~s~vV~~ill~A~~-----~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--------~syim~evt 429 (556)
T KOG1467|consen 363 LLTYGSSSVVNMILLEAKE-----LGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--------ASYIMLEVT 429 (556)
T ss_pred EEEecchHHHHHHHHHHHH-----hCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--------HHHHHHhcc
Confidence 7888888877777666553 221112334433333333344443 488887776542 222223447
Q ss_pred EEEEEecCCCCCccccC---HHHHHHHHHHcCCeEEEe
Q 013675 275 VLIVGSAPGFPHGIIDP---IQELGELALSHGTCLHVD 309 (438)
Q Consensus 275 ~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lhVD 309 (438)
+++.+.+.-...|.+.. -..|+=+|++|+++++|=
T Consensus 430 kvfLGahailsNG~vysR~GTa~valvAna~nVPVlVC 467 (556)
T KOG1467|consen 430 KVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVC 467 (556)
T ss_pred eeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEE
Confidence 88888888888898876 346777788999998874
No 459
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=31.82 E-value=1.7e+02 Score=23.12 Aligned_cols=50 Identities=22% Similarity=0.132 Sum_probs=33.2
Q ss_pred cEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE
Q 013675 248 IKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHV 308 (438)
Q Consensus 248 i~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhV 308 (438)
-.++.++-| ..+.+..++..+..+++++. ...|=+++.++|++.+++++.
T Consensus 41 ~~lvIt~gd-----R~di~~~a~~~~i~~iIltg------~~~~~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 41 GDLVITPGD-----REDIQLAAIEAGIACIILTG------GLEPSEEVLELAKELGIPVIS 90 (105)
T ss_dssp TEEEEEETT------HHHHHHHCCTTECEEEEET------T----HHHHHHHHHHT-EEEE
T ss_pred CeEEEEeCC-----cHHHHHHHHHhCCCEEEEeC------CCCCCHHHHHHHHHCCCEEEE
Confidence 355555554 46777778888888888774 455778999999999998764
No 460
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=31.77 E-value=4.8e+02 Score=25.24 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=57.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc--Cc--HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH--SA--YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRN 273 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h--~s--~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~ 273 (438)
++|.|-|......++.+.+ .|. +-+|++.++.- .. ..+.+...|+.+..++- .++-..+.+=
T Consensus 119 ILT~~~S~tv~~~l~~a~~-----~~~-~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D--------sa~~~~m~~v 184 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFE-----QGK-DIEVIATETRPRKQGHITAKELRDYGIPVTLIVD--------SAVRYFMKEV 184 (301)
T ss_pred EEEECCcHHHHHHHHHHHH-----cCC-cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh--------hHHHHHHHhC
Confidence 7887777666655555543 331 24677766542 12 23334445888888762 2233333333
Q ss_pred cEEEEEecCCCCCc-cccCH--HHHHHHHHHcCCeEEEec
Q 013675 274 TVLIVGSAPGFPHG-IIDPI--QELGELALSHGTCLHVDL 310 (438)
Q Consensus 274 t~~vv~~~~~~~tG-~iddi--~~I~~la~~~~i~lhVD~ 310 (438)
.+++++...-...| .+..+ -.++-+|+.+++++.|=+
T Consensus 185 d~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a 224 (301)
T TIGR00511 185 DHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAA 224 (301)
T ss_pred CEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEc
Confidence 45666555555556 44444 478888999999988743
No 461
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=31.54 E-value=3.8e+02 Score=24.01 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCC---CcCc----HHHH
Q 013675 170 ARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS---AHSA----YDKA 242 (438)
Q Consensus 170 ~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~---~h~s----~~~a 242 (438)
.++.....+.+.+++.-+.-. + .--.=+++.+...+..+.......+...+++|++... .|.- +...
T Consensus 32 ~~~l~p~m~~vG~~w~~~~i~----v--a~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~ 105 (201)
T cd02070 32 EEGLAPGMDIVGDKYEEGEIF----V--PELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATM 105 (201)
T ss_pred HHHHHHHHHHHHHHHccCCee----H--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHH
Confidence 345555556677777665311 0 1112234444455555444333221112356654332 3543 3334
Q ss_pred HhhcCcEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHHcC----CeEEEecc
Q 013675 243 AQYFNIKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALSHG----TCLHVDLC 311 (438)
Q Consensus 243 ~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~----i~lhVD~a 311 (438)
.+..|.+++.+.. .+.++++.+.+.+ ++.+|.+|...+. ....+.++.+..++.+ +.+++=|.
T Consensus 106 l~~~G~~vi~lG~----~~p~~~l~~~~~~~~~d~v~lS~~~~~--~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 106 LEANGFEVIDLGR----DVPPEEFVEAVKEHKPDILGLSALMTT--TMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHCCCEEEECCC----CCCHHHHHHHHHHcCCCEEEEeccccc--cHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 4555999876653 3567888777754 6778877775443 3667888888777764 56666554
No 462
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.39 E-value=4.6e+02 Score=24.81 Aligned_cols=114 Identities=16% Similarity=0.067 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC--cCc--HHHHHh
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA--HSA--YDKAAQ 244 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~--h~s--~~~a~~ 244 (438)
.....+.+++..++.++. + + ++|.|.+..+...+..+ +++ .+|++.++. +.. +.+...
T Consensus 70 ~~~~~~~~~~~A~~~i~~---d----v--ILT~s~S~~v~~~l~~~------~~~---~~V~v~ESrP~~eG~~~a~~L~ 131 (253)
T PRK06372 70 IEKHEKMAIEHAKPLFND---S----V--IGTISSSQVLKAFISSS------EKI---KSVYILESRPMLEGIDMAKLLV 131 (253)
T ss_pred HHHHHHHHHHHHHhhcCC---C----E--EEEeCCcHHHHHHHHhc------CCC---CEEEEecCCCchHHHHHHHHHH
Confidence 334445555555666633 2 4 78877766665555331 122 467776543 222 223333
Q ss_pred hcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc-cCH--HHHHHHHHHcCCeEEE
Q 013675 245 YFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII-DPI--QELGELALSHGTCLHV 308 (438)
Q Consensus 245 ~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i-ddi--~~I~~la~~~~i~lhV 308 (438)
..|+++..++- ..+-..+.+=.+++++...-...|.+ ..+ -.++-.|++++++++|
T Consensus 132 ~~GI~vtli~D--------sa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V 190 (253)
T PRK06372 132 KSGIDVVLLTD--------ASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYS 190 (253)
T ss_pred HCCCCEEEEeh--------hHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEE
Confidence 34888877752 12233333334566555554445544 443 4778889999999998
No 463
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=31.19 E-value=3.9e+02 Score=26.00 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=56.7
Q ss_pred CeEEecCCCcCcHHHHHhhcCc--EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccc--cC-----HHHHHH
Q 013675 227 PEMIIPVSAHSAYDKAAQYFNI--KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII--DP-----IQELGE 297 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~Gi--~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~i--dd-----i~~I~~ 297 (438)
..||+|--.......-.+.+|= ++...+.| ..|.+.+++++...-..|-+..-..+|+.+ .| -++|+.
T Consensus 86 SQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd---~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~Dvn~~~aerlAr 162 (391)
T KOG2865|consen 86 SQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFD---LRDEDSIRAVVKHSNVVINLIGRDYETKNFSFEDVNVHIAERLAR 162 (391)
T ss_pred CeEEEeccCCccchhheeecccccceeeeccC---CCCHHHHHHHHHhCcEEEEeeccccccCCcccccccchHHHHHHH
Confidence 7899886655544444445542 56666654 368999999998766666666677778866 23 479999
Q ss_pred HHHHcCC--eEEEecc
Q 013675 298 LALSHGT--CLHVDLC 311 (438)
Q Consensus 298 la~~~~i--~lhVD~a 311 (438)
+|++-|+ .+|+-+-
T Consensus 163 icke~GVerfIhvS~L 178 (391)
T KOG2865|consen 163 ICKEAGVERFIHVSCL 178 (391)
T ss_pred HHHhhChhheeehhhc
Confidence 9999997 4777643
No 464
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.19 E-value=1.7e+02 Score=28.03 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=42.5
Q ss_pred CcCcHHHHHhhcCcEEEEee-CCCCCccCHHHHHHhhc---c-CcEEEEEecCCCCCccccCHHHHHHHHHHcCCeE
Q 013675 235 AHSAYDKAAQYFNIKLWRVP-VDKEFRADVKAIKKYIN---R-NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL 306 (438)
Q Consensus 235 ~h~s~~~a~~~~Gi~v~~v~-~~~~~~~d~~~Le~~I~---~-~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l 306 (438)
.|++|.-.++.+|++++.+- ..++....+.+|.+.++ + +.++|+... +.+. +.+..++++.|+.+
T Consensus 183 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~-~~~~------~~~~~ia~~~gv~v 252 (287)
T cd01137 183 SEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVES-TVND------RLMKQVAKETGAKI 252 (287)
T ss_pred ecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeC-CCCh------HHHHHHHHHhCCcc
Confidence 57888888999999987642 33455566666666553 3 466665443 3322 45667888888875
No 465
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=31.15 E-value=1e+02 Score=27.38 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred CCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhh
Q 013675 258 EFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVL 317 (438)
Q Consensus 258 ~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~ 317 (438)
.|+-|...++++++. -++.++++.- ..+-++.|.++.++.|+.+..|.-++|--+
T Consensus 9 EGK~D~~~lk~~~d~---~~I~T~Gs~i--~~~~i~~i~~~~~~rgVIIfTDpD~~GekI 63 (174)
T TIGR00334 9 EGKDDQARIKQAFDV---DVIETNGSAL--KDETINLIKKAQKKQGVIILTDPDFPGEKI 63 (174)
T ss_pred ecchHHHHHHHhcCc---eEEEECCCcc--CHHHHHHHHHHhhcCCEEEEeCCCCchHHH
Confidence 378899999999863 3345555321 223478888889999999999999877544
No 466
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=31.07 E-value=38 Score=36.52 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=28.7
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 281 ~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
+++...|..++++++.+.||++||.|+.|.++.
T Consensus 197 ~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 197 APTSRFGTPDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred ccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 345568889999999999999999999998864
No 467
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=30.83 E-value=49 Score=31.16 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=46.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCcc-CHHHHHHhhccCcE-
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRA-DVKAIKKYINRNTV- 275 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~-d~~~Le~~I~~~t~- 275 (438)
.+-.|.+||-.++-.... .| -.++++..+-+.- ....+..++ .|++ |.+.|++.|.++-.
T Consensus 6 lvlgGT~egr~la~~L~~------~g---~~v~~Svat~~g~---~~~~~~~v~------~G~l~~~~~l~~~l~~~~i~ 67 (248)
T PRK08057 6 LLLGGTSEARALARALAA------AG---VDIVLSLAGRTGG---PADLPGPVR------VGGFGGAEGLAAYLREEGID 67 (248)
T ss_pred EEEechHHHHHHHHHHHh------CC---CeEEEEEccCCCC---cccCCceEE------ECCCCCHHHHHHHHHHCCCC
Confidence 666788888776543321 44 3566554443322 222233332 3567 88888888876532
Q ss_pred -EEEEecCCCCCccccCH-HHHHHHHHHcCCeEE
Q 013675 276 -LIVGSAPGFPHGIIDPI-QELGELALSHGTCLH 307 (438)
Q Consensus 276 -~vv~~~~~~~tG~iddi-~~I~~la~~~~i~lh 307 (438)
+|=+||| +- ..+ +.+.+.|++.|++.+
T Consensus 68 ~VIDATHP---fA--~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 68 LVIDATHP---YA--AQISANAAAACRALGIPYL 96 (248)
T ss_pred EEEECCCc---cH--HHHHHHHHHHHHHhCCcEE
Confidence 3333443 21 112 355667777777643
No 468
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=30.80 E-value=4.3e+02 Score=25.39 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHhhccC-----cEEEEEecCCCC----Ccc-ccCHHHHHHHHHHcCCeEEEec
Q 013675 264 KAIKKYINRN-----TVLIVGSAPGFP----HGI-IDPIQELGELALSHGTCLHVDL 310 (438)
Q Consensus 264 ~~Le~~I~~~-----t~~vv~~~~~~~----tG~-iddi~~I~~la~~~~i~lhVD~ 310 (438)
+.+++.|+.. +..+.+.-.+++ ++. +.|++.|..+|+.+|+++++=|
T Consensus 218 ~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~~~~~~~~l~~L~~~c~~~gc~~~iLG 274 (282)
T PF12818_consen 218 EHNEEIIKQHFLNVYCSVVFLVVSNTPIDTNTDQGFGPLDALKRACRLCGCPVHILG 274 (282)
T ss_pred HHHHHHHHhhhhccccceEEEEEecCCCCCcccccccHHHHHHHHHHHCCCCEEEEe
Confidence 3477777652 223333333333 344 4789999999999999988643
No 469
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=30.50 E-value=1.4e+02 Score=27.62 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=37.9
Q ss_pred HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeE-EEec
Q 013675 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL-HVDL 310 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l-hVD~ 310 (438)
+.++++-.|.++...+.+.+-....+.++.++..+...+++...+ .+......+.++++++++ .+|.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-----~~~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 21 IKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV-----ETGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc-----cccchHHHHHHHHCCCCEEEEec
Confidence 456667778888877654332233345666666677777664322 122233445566778774 4553
No 470
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=29.82 E-value=4.6e+02 Score=25.68 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=47.8
Q ss_pred HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 239 ~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+.+.++-.|+++++..+... -|.....+.+..++.++++..-|+ ..--++.+...+.+++++++.+..
T Consensus 180 lk~~A~~~Gl~vve~~v~~~--ndi~~a~~~l~g~~d~i~~p~dn~---i~s~~~~l~~~a~~~kiPli~sd~ 247 (322)
T COG2984 180 LKKEARKAGLEVVEAAVTSV--NDIPRAVQALLGKVDVIYIPTDNL---IVSAIESLLQVANKAKIPLIASDT 247 (322)
T ss_pred HHHHHHHCCCEEEEEecCcc--cccHHHHHHhcCCCcEEEEecchH---HHHHHHHHHHHHHHhCCCeecCCH
Confidence 56677888999999988631 244555555557777777665543 223478888999999999987654
No 471
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=29.81 E-value=1.8e+02 Score=26.84 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=51.4
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeE--EecC-----CCcC----cHHHHHhhcCcEEEEeeCCCCCccCHHHH
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEM--IIPV-----SAHS----AYDKAAQYFNIKLWRVPVDKEFRADVKAI 266 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~V--iv~~-----~~h~----s~~~a~~~~Gi~v~~v~~~~~~~~d~~~L 266 (438)
+.-|||-.+++...++.++ ... ..+ +++. ..|. -....++.+|+.++.++++.+..--.+++
T Consensus 5 ~l~SGGKDS~lAl~~a~~~-~~v------~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~l 77 (218)
T PF01902_consen 5 ALWSGGKDSCLALYRALRQ-HEV------VCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVEDL 77 (218)
T ss_dssp EE--SSHHHHHHHHHHHHT--EE------EEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHh-CCc------cEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHHH
Confidence 6789999999998887764 110 011 1221 1233 26677888999999888863333345777
Q ss_pred HHhhcc-CcEEEEEecCCCCCccccC---HHHHHHHHHHcCCeEE
Q 013675 267 KKYINR-NTVLIVGSAPGFPHGIIDP---IQELGELALSHGTCLH 307 (438)
Q Consensus 267 e~~I~~-~t~~vv~~~~~~~tG~idd---i~~I~~la~~~~i~lh 307 (438)
.+++.+ +...++ +|.++- -..+-++|.+.|+..+
T Consensus 78 ~~~l~~~~v~~vv-------~GdI~~~~~r~~~e~vc~~lGl~~~ 115 (218)
T PF01902_consen 78 KEALKELKVEAVV-------FGDIDSEYQRNWVERVCERLGLEAV 115 (218)
T ss_dssp HHHHCTC--SEEE---------TTS-HHHHHHHHHHHHHCT-EEE
T ss_pred HHHHHHcCCCEEE-------ECcCCcHHHHHHHHHHHHHcCCEEE
Confidence 777754 222222 576642 3577788999887654
No 472
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.54 E-value=1.6e+02 Score=27.91 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEecCCCcCc-------HHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHH
Q 013675 229 MIIPVSAHSA-------YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALS 301 (438)
Q Consensus 229 Viv~~~~h~s-------~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~ 301 (438)
|++|...++- +.+.++..|..+.....+.+.... +.++...+.+...+++.... .+.+.+.++.+.
T Consensus 6 vivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~------~~~~~l~~~~~~ 78 (279)
T PF00532_consen 6 VIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSE------NDDEELRRLIKS 78 (279)
T ss_dssp EEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSS------CTCHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEeccc------CChHHHHHHHHc
Confidence 6777776554 445666778888888776544334 66666666778777776332 235667777766
Q ss_pred cCCeE-EEecc
Q 013675 302 HGTCL-HVDLC 311 (438)
Q Consensus 302 ~~i~l-hVD~a 311 (438)
++|+ .+|..
T Consensus 79 -~iPvV~~~~~ 88 (279)
T PF00532_consen 79 -GIPVVLIDRY 88 (279)
T ss_dssp -TSEEEEESS-
T ss_pred -CCCEEEEEec
Confidence 7875 45544
No 473
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=29.46 E-value=77 Score=32.78 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=30.7
Q ss_pred CHHHHHHhhcc-----CcEEEEEecCCCCCccc-cCHHHHHHHHH-HcCCeEEEe
Q 013675 262 DVKAIKKYINR-----NTVLIVGSAPGFPHGII-DPIQELGELAL-SHGTCLHVD 309 (438)
Q Consensus 262 d~~~Le~~I~~-----~t~~vv~~~~~~~tG~i-ddi~~I~~la~-~~~i~lhVD 309 (438)
+-++|++.|.+ ++.++++..... +|.| ||++.+++-+. ++|++++.=
T Consensus 81 ~~~~L~~~i~ei~~~~~p~~ifv~~TC~-t~iIGdDle~va~~~~~~~gipVV~v 134 (457)
T CHL00073 81 DYEELKRLCLQIKKDRNPSVIVWIGTCT-TEIIKMDLEGMAPKLEAEIGIPIVVA 134 (457)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEccCc-HHhhccCHHHHHHHHHHhhCCCEEEE
Confidence 45677777643 455554444333 7777 89999987655 789987643
No 474
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=29.36 E-value=75 Score=31.37 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCccCHHHHHHhhcc-CcEEEEEecCCCCCccccCHHHHHHHHHH---cCCeEEEeccccchhhhhhhhcCCCCCCCccC
Q 013675 258 EFRADVKAIKKYINR-NTVLIVGSAPGFPHGIIDPIQELGELALS---HGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFS 333 (438)
Q Consensus 258 ~~~~d~~~Le~~I~~-~t~~vv~~~~~~~tG~iddi~~I~~la~~---~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~ 333 (438)
++..+.++..+.|.+ +.+-|.+.. |-|....-.+|++..++ ..+++..|-+||+..+. +....
T Consensus 2 ~y~~e~~~~i~~I~~~~~krV~LQf---PdgLl~~a~~ia~~l~~~~~~~v~IlaD~~YGaCcvd----------d~~a~ 68 (332)
T TIGR00322 2 NYNLETEKVIGNIRKYNAKRVGLQM---PEGLKIRALEIAEIIEQFCGVETVISGDTSFGACDID----------DFTAR 68 (332)
T ss_pred CccccHHHHHHHHHHcCCCEEEEEC---CHHHHHHHHHHHHHHHhccCceEEEEcCCceecCCCC----------HHHHh
Confidence 456677777777765 455565555 47888888888888876 45678889999876542 23334
Q ss_pred CCCccEEEeCCCCCC
Q 013675 334 VQGVTSISVDVHKYG 348 (438)
Q Consensus 334 ~~gvdsis~s~hK~~ 348 (438)
..++|.+.--+|-++
T Consensus 69 ~~~aD~iVHyGHscl 83 (332)
T TIGR00322 69 ALDVDLIVHYAHTPL 83 (332)
T ss_pred hcCCCEEEEcCCCCC
Confidence 457888888888884
No 475
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.33 E-value=95 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 263 ~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
++.++++...+++.+++..+ ..-+++.++|+++|+.++-..|.|
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG-------AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHHcCCEEEeCCcce
Confidence 45566666667777777666 456899999999999998888864
No 476
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=29.12 E-value=5.6e+02 Score=25.14 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=63.5
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHH---------
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKK--------- 268 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~--------- 268 (438)
+++.|.|.+.+.+..-. ....+|++++.+...-+.- -|-.+...++.-+-..++++|.+
T Consensus 87 ~VSgg~Tga~m~aal~i---ig~~~Gv~rpa~~~~lp~~---------~~~~~~l~D~GaN~~p~~e~L~q~Aim~a~~a 154 (322)
T TIGR00182 87 VISAGNSGALMGLALLR---LGRIKGIDRPALMTLLPTV---------NGDWFVLLDVGANVDCKPKYLVQFALMGSVYS 154 (322)
T ss_pred EEeCCcHHHHHHHHHHH---hcccCCCCcceEEEEEEec---------CCCEEEEEeCcccCCCCHHHHHHHHHHHHHHH
Confidence 66667777766554432 2234787777553222110 02124444443333444444322
Q ss_pred --hhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccchhhhhhhhcCCCCCCCccCCCCccEEEeCCC
Q 013675 269 --YIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH 345 (438)
Q Consensus 269 --~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg~~~pf~~~~g~~~p~~~~~~~gvdsis~s~h 345 (438)
.+. ++|++-+++.++-.+=..+-+.+-.++.++.. .+..+|- +..-|.....+|++++|+.
T Consensus 155 ~~~lGi~~PrVALLn~G~e~~kg~~~v~eA~~Ll~~~~-~~~f~G~---------------ve~~di~~g~~DVvV~DGf 218 (322)
T TIGR00182 155 KKVLGVDSPRVGLLNIGTEDNKGNDLHKETFQLLKEDP-NINFIGN---------------VEARDLLDGVCDVLVCDGF 218 (322)
T ss_pred HHHcCCCCCeEEEEeCCCCCCCCCHHHHHHHHHHhcCC-CceEEeE---------------eecccccCCCCCEEEcCCc
Confidence 223 46887777776654444455777788887532 2444443 2233444456899999874
No 477
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=29.06 E-value=2.9e+02 Score=26.05 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 242 a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
.....+-++...+.++ ..+.+++.+... .++++. +..+.+ +++.++.+.+++++.++++|..
T Consensus 66 ~i~~~~pe~~~~~~~~----~~~~~~~~~~~~-davvig-~Gl~~~--~~~~~l~~~~~~~~~pvVlDa~ 127 (272)
T TIGR00196 66 LINSVSPELIVHRLGW----KVDEDEELLERY-DVVVIG-PGLGQD--PSFKKAVEEVLELDKPVVLDAD 127 (272)
T ss_pred HHhhcCCEEEEecchh----hHHHHHhhhccC-CEEEEc-CCCCCC--HHHHHHHHHHHhcCCCEEEEhH
Confidence 3445555666655531 355566655433 344443 223333 3388899999999999999974
No 478
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.06 E-value=1.4e+02 Score=24.85 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCcCcHHHHHhhcCcEEEEeeCCCC--CccCHHHHHHhhcc--CcEEEEEecCCCCCcc-----c---cCHHHHHHHHH
Q 013675 233 VSAHSAYDKAAQYFNIKLWRVPVDKE--FRADVKAIKKYINR--NTVLIVGSAPGFPHGI-----I---DPIQELGELAL 300 (438)
Q Consensus 233 ~~~h~s~~~a~~~~Gi~v~~v~~~~~--~~~d~~~Le~~I~~--~t~~vv~~~~~~~tG~-----i---ddi~~I~~la~ 300 (438)
.+...+...+++..|+...+||+... -.-|++++.+++++ .|.+..+-.++-.+-. . .+.++|.++.+
T Consensus 44 QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~~~~~gm~~de~~a~g~ 123 (130)
T COG3453 44 QPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLGELDGGMSRDEIEALGQ 123 (130)
T ss_pred CCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34455577888899999999999752 23577778888874 5666655555322210 0 24555555555
Q ss_pred HcC
Q 013675 301 SHG 303 (438)
Q Consensus 301 ~~~ 303 (438)
.+|
T Consensus 124 a~G 126 (130)
T COG3453 124 AAG 126 (130)
T ss_pred hhC
Confidence 554
No 479
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=28.77 E-value=5e+02 Score=25.13 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=35.2
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~ 255 (438)
+..++|..+.-+|..+.. .|++ -.+++|...-....+..+.+|.+++.++-
T Consensus 74 v~~SsGN~g~alA~~a~~------~G~~-~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~ 124 (324)
T cd01563 74 ACASTGNTSASLAAYAAR------AGIK-CVVFLPAGKALGKLAQALAYGATVLAVEG 124 (324)
T ss_pred EEeCCCHHHHHHHHHHHH------cCCc-eEEEEeCCCCHHHHHHHHHcCCEEEEECC
Confidence 455677777777655433 4532 46788887755566788889999998864
No 480
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.35 E-value=4.1e+02 Score=23.37 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHH-HHhhcCcEEEEeeCCCC------CccCHHHHHHhhcc----Cc-
Q 013675 207 ILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDK-AAQYFNIKLWRVPVDKE------FRADVKAIKKYINR----NT- 274 (438)
Q Consensus 207 ~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~-a~~~~Gi~v~~v~~~~~------~~~d~~~Le~~I~~----~t- 274 (438)
+..+.+.+++ +..-.|.+.+++..|-.+.. ..+..|++...++.|.+ -.+. .++++.+++ ..
T Consensus 4 ~~~~~~~~~~-----p~l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~-~~~~~~~~~l~~~~~~ 77 (168)
T PF09419_consen 4 TLAVFRLLRN-----PSLLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIP-PEYAEWLNELKKQFGK 77 (168)
T ss_pred hHHHHHHHcC-----ccccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCC-HHHHHHHHHHHHHCCC
Confidence 4444445443 44444777777777776654 35667999988888742 1232 233333432 12
Q ss_pred -EEEEEecCCCCCccccC--HHHHHHHHHHcCCeEEE
Q 013675 275 -VLIVGSAPGFPHGIIDP--IQELGELALSHGTCLHV 308 (438)
Q Consensus 275 -~~vv~~~~~~~tG~idd--i~~I~~la~~~~i~lhV 308 (438)
.++++|+- .|..+| -++...+.++.|++++.
T Consensus 78 ~~v~IvSNs---aGs~~d~~~~~a~~~~~~lgIpvl~ 111 (168)
T PF09419_consen 78 DRVLIVSNS---AGSSDDPDGERAEALEKALGIPVLR 111 (168)
T ss_pred CeEEEEECC---CCcccCccHHHHHHHHHhhCCcEEE
Confidence 35555543 576665 56788888888988654
No 481
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=28.23 E-value=1.7e+02 Score=27.96 Aligned_cols=83 Identities=16% Similarity=0.064 Sum_probs=55.9
Q ss_pred CeEEecCCCcCcHHHHHhhcCcEEEEeeCCC-CCccCHHHHHHhhccC-cEEEEEecCCCCCccccCHHHHHHHHHHcCC
Q 013675 227 PEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRADVKAIKKYINRN-TVLIVGSAPGFPHGIIDPIQELGELALSHGT 304 (438)
Q Consensus 227 ~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~-~~~~d~~~Le~~I~~~-t~~vv~~~~~~~tG~iddi~~I~~la~~~~i 304 (438)
|-|.+-++-| ..+.++.+|++...+...+ +-+-....+...+... ..+++-.+|+ -+.-||=-.+.+.|++.|+
T Consensus 32 D~iaaEDTR~--t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~--P~ISDPG~~LV~~a~~~gi 107 (275)
T COG0313 32 DVIAAEDTRV--TRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGT--PLISDPGYELVRAAREAGI 107 (275)
T ss_pred CEEEEeccHH--HHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCC--CcccCccHHHHHHHHHcCC
Confidence 4445444444 3456777888766666654 4455667777777665 6666666664 3788999999999999999
Q ss_pred eEE-Eecccc
Q 013675 305 CLH-VDLCLG 313 (438)
Q Consensus 305 ~lh-VD~a~g 313 (438)
.++ +-|+.+
T Consensus 108 ~V~~lPG~sA 117 (275)
T COG0313 108 RVVPLPGPSA 117 (275)
T ss_pred cEEecCCccH
Confidence 865 445543
No 482
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=28.18 E-value=1.5e+02 Score=26.33 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=63.3
Q ss_pred cceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEe--cCCC-cCcHHHHHhhcCcEEEEe--eCCCCCccCHHHHHHh
Q 013675 195 VCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII--PVSA-HSAYDKAAQYFNIKLWRV--PVDKEFRADVKAIKKY 269 (438)
Q Consensus 195 v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv--~~~~-h~s~~~a~~~~Gi~v~~v--~~~~~~~~d~~~Le~~ 269 (438)
++|.|-+|=|+-++..+.-+.. .| .++++ |... -++..+.....|.....+ +.+ +..++.+.
T Consensus 6 i~GpM~sGKS~eLi~~~~~~~~-----~~---~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~-----~~~~~~~~ 72 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRYEI-----AG---KKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPID-----NLFEIIDI 72 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHHHH-----TT----EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEES-----SGGGGGGG
T ss_pred EECCcCChhHHHHHHHHHHHHh-----CC---CeEEEEEecccCcCCCCeEEecCCCcccccccchh-----hHHHHHHH
Confidence 3577778888776665554432 34 34443 2221 222224556678877766 322 45556666
Q ss_pred hccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 270 INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 270 I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+..++.+|.+--.++-+ +++.++.+++..+|+.+++=|-
T Consensus 73 ~~~~~dvI~IDEaQFf~---~~i~~l~~~~~~~g~~Vi~~GL 111 (176)
T PF00265_consen 73 LENDYDVIGIDEAQFFD---EQIVQLVEILANKGIPVICAGL 111 (176)
T ss_dssp CCTTCSEEEESSGGGST---TTHHHHHHHHHHTT-EEEEEEE
T ss_pred hccCCCEEEEechHhhH---HHHHHHHHHHHhCCCeEEEEee
Confidence 66667788888887744 6788899999999999987655
No 483
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=27.92 E-value=1.3e+02 Score=22.06 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 013675 7 KSSLIRFRASANSFLSQYEPVILLLAPLLTLLVARVLQSFLDAV 50 (438)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (438)
.+.++.+...++++++.++|..++-...+.+++-++=.+++..+
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~v 62 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKV 62 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 44567788889999999999988887777666655444444433
No 484
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=27.81 E-value=1.3e+02 Score=29.41 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=37.1
Q ss_pred CccCHHHHHHhhcc-----CcEEEEEecCCCCCccccC-HHHHHHHHHHcCCeEEEeccc
Q 013675 259 FRADVKAIKKYINR-----NTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 259 ~~~d~~~Le~~I~~-----~t~~vv~~~~~~~tG~idd-i~~I~~la~~~~i~lhVD~a~ 312 (438)
..++.++++..++. ...-+++-+++-|-|.-.+ ..+|.++|++.|+.+++|..-
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 45666666665432 1122344566667787654 799999999999999999763
No 485
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=27.77 E-value=1.5e+02 Score=27.28 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=36.2
Q ss_pred HHHHHHhhccCcEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEecc
Q 013675 263 VKAIKKYINRNTVLIVGSAPGFPHGI-IDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 263 ~~~Le~~I~~~t~~vv~~~~~~~tG~-iddi~~I~~la~~~~i~lhVD~a 311 (438)
.+.+++++.....++.+=--+..+-. ..-.+++.++|++|+++++++.-
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~ 73 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDR 73 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc
Confidence 78899999887666665555443333 24457899999999999988765
No 486
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=27.75 E-value=1.2e+02 Score=29.20 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=48.2
Q ss_pred CCcCcHHHHHhh--cCcEEEEeeCCCCCccCHHHHHHhhccCcEE-EEEecCCCCCccccCHHHHHHHHHHcCCeEEEec
Q 013675 234 SAHSAYDKAAQY--FNIKLWRVPVDKEFRADVKAIKKYINRNTVL-IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDL 310 (438)
Q Consensus 234 ~~h~s~~~a~~~--~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~-vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~ 310 (438)
++|+++...-.. -++-++.+|.+ .-++.+++.....++. ++++.+ ++ ..+-++|.++|+++|+.++=-.
T Consensus 52 ~~y~sv~dlp~~~~~DlAvi~vp~~----~v~~~l~e~~~~gvk~avI~s~G-f~---~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 52 PVFNTVAEAVEATGANASVIYVPPP----FAADAILEAIDAGIDLIVCITEG-IP---VLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred eccCCHHHHhhccCCCEEEEEcCHH----HHHHHHHHHHHCCCCEEEEECCC-CC---HHHHHHHHHHHHHcCCEEECCC
Confidence 356667666664 45566666642 3577888888877765 555554 32 2333489999999999998887
Q ss_pred ccc
Q 013675 311 CLG 313 (438)
Q Consensus 311 a~g 313 (438)
|.|
T Consensus 124 c~G 126 (291)
T PRK05678 124 CPG 126 (291)
T ss_pred CCc
Confidence 875
No 487
>PRK00509 argininosuccinate synthase; Provisional
Probab=27.71 E-value=2.1e+02 Score=29.01 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=59.1
Q ss_pred eeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEec--CCCc----CcHHHHHhhcCc-EEEEeeCCCCCccCHHHHHHh
Q 013675 197 GNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIP--VSAH----SAYDKAAQYFNI-KLWRVPVDKEFRADVKAIKKY 269 (438)
Q Consensus 197 g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~--~~~h----~s~~~a~~~~Gi-~v~~v~~~~~~~~d~~~Le~~ 269 (438)
.+..|||-.+..++..+... -| .+|+.- .... ....+.|..+|+ +...+++.+.+ .-+-+...
T Consensus 6 vva~SGGlDSsvla~~l~e~-----lG---~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~~ef--~~~~i~~~ 75 (399)
T PRK00509 6 VLAYSGGLDTSVIIKWLKET-----YG---CEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEF--VRDYVFPA 75 (399)
T ss_pred EEEEcCCHHHHHHHHHHHHh-----hC---CeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCHHHH--HHHhHHHH
Confidence 37789999988877665431 14 344321 1111 124566777797 56655654321 11122334
Q ss_pred hccCcEEEEEecCCCCCccc--cC--HHHHHHHHHHcCCeEEEecccc
Q 013675 270 INRNTVLIVGSAPGFPHGII--DP--IQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 270 I~~~t~~vv~~~~~~~tG~i--dd--i~~I~~la~~~~i~lhVD~a~g 313 (438)
|..+.. ..+.+|.+.. .| .+.+.++|++.|+..++||+.+
T Consensus 76 i~~n~~----y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 76 IRANAL----YEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHhChH----hcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 444432 1233434433 22 5789999999999999999987
No 488
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=27.65 E-value=1.9e+02 Score=27.97 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCc
Q 013675 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI 248 (438)
Q Consensus 169 ~~~~e~~~~~~~a~l~g~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi 248 (438)
.+.+.+|+.=.+.+-+...... .+.+..|-|.+-..++.++..+.. .-| .|+..++. +-+ ....
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a-----~~r~L~G~SlGG~vsL~agl~~Pe-~FG----~V~s~Sps-~~~-~~~~---- 218 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADA-----DGRVLAGDSLGGLVSLYAGLRHPE-RFG----HVLSQSGS-FWW-TPLD---- 218 (299)
T ss_pred HHHHHHHhhhhhhccCcccccC-----CCcEEeccccccHHHHHHHhcCch-hhc----eeeccCCc-ccc-Cccc----
Confidence 4455566666666666654433 334555555555555555543211 123 34433322 111 0000
Q ss_pred EEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEeccccc
Q 013675 249 KLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314 (438)
Q Consensus 249 ~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~gg 314 (438)
. . ++.......+...++...-. ++.+.+...-+..-|..++.+.+++.++..+.+..-||
T Consensus 219 ~---~--~~~~~~~~l~~~~a~~~~~~-~~l~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~Gg 278 (299)
T COG2382 219 T---Q--PQGEVAESLKILHAIGTDER-IVLTTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPGG 278 (299)
T ss_pred c---c--cccchhhhhhhhhccCccce-EEeecCCccccccchhHHHHHHHHhcCCcceeeecCCC
Confidence 0 0 11122233344455554434 66677777777888999999999999999999888664
No 489
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=27.52 E-value=42 Score=36.12 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.6
Q ss_pred cCCCCCccccCHHHHHHHHHHcCCeEEEecccc
Q 013675 281 APGFPHGIIDPIQELGELALSHGTCLHVDLCLG 313 (438)
Q Consensus 281 ~~~~~tG~iddi~~I~~la~~~~i~lhVD~a~g 313 (438)
.|..+++.+++++++.+.||+.||.|++|.++-
T Consensus 220 ~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 220 NPYDPATRIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred CCCccchHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 445555667899999999999999999998863
No 490
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.52 E-value=2.3e+02 Score=22.62 Aligned_cols=68 Identities=4% Similarity=-0.105 Sum_probs=46.3
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc-cCcEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEecccc
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHGIIDPIQELGELALSH--GTCLHVDLCLG 313 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~-~~t~~vv~~~~~~~tG~iddi~~I~~la~~~--~i~lhVD~a~g 313 (438)
...++..|.++..++.+ .+.+++.+.+. .++.+|.++... +.......++++..++. ++.+++=|.+.
T Consensus 21 a~~l~~~G~~v~~~d~~----~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 21 AAYLRKAGHEVDILDAN----VPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHHTTBEEEEEESS----B-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHHHHCCCeEEEECCC----CCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 34555568999888764 34577777664 467788877753 44566678888888776 67888777653
No 491
>PRK10785 maltodextrin glucosidase; Provisional
Probab=27.33 E-value=46 Score=35.74 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=25.3
Q ss_pred CCccccCHHHHHHHHHHcCCeEEEeccc
Q 013675 285 PHGIIDPIQELGELALSHGTCLHVDLCL 312 (438)
Q Consensus 285 ~tG~iddi~~I~~la~~~~i~lhVD~a~ 312 (438)
..|..++++++++.||++|+.|++|.+.
T Consensus 221 ~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 221 QLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688899999999999999999999885
No 492
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=26.92 E-value=6.9e+02 Score=25.50 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCCCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcE
Q 013675 171 RFEAEVIAMTAALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK 249 (438)
Q Consensus 171 ~~e~~~~~~~a~l~g-~~~~~~~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~ 249 (438)
.+....++...+.+| ..... ++.-|..+-..++++.+.. .|+ .+|++..-++.-..+.++.+|.+
T Consensus 160 Si~saAv~lA~~~~~~L~~~~-------vlvIGAGem~~lva~~L~~-----~g~--~~i~IaNRT~erA~~La~~~~~~ 225 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKK-------VLVIGAGEMGELVAKHLAE-----KGV--KKITIANRTLERAEELAKKLGAE 225 (414)
T ss_pred chHHHHHHHHHHHhcccccCe-------EEEEcccHHHHHHHHHHHh-----CCC--CEEEEEcCCHHHHHHHHHHhCCe
Confidence 344555666777777 45544 3444555555555555543 453 46777777777777778888844
Q ss_pred EEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecc
Q 013675 250 LWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC 311 (438)
Q Consensus 250 v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lhVD~a 311 (438)
+. ..+++...+.+.-.++..|+...|.=.-.+++...+. +.+ .+++|-+
T Consensus 226 ~~----------~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~--r~~-~livDia 274 (414)
T COG0373 226 AV----------ALEELLEALAEADVVISSTSAPHPIITREMVERALKI--RKR-LLIVDIA 274 (414)
T ss_pred ee----------cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhc--ccC-eEEEEec
Confidence 42 4567777777654555444433332222233333222 223 8999977
No 493
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.85 E-value=1.7e+02 Score=27.09 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeEE
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLH 307 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~lh 307 (438)
..+++..|.++..++...+..-..+.++++++.++..+++..... +...+..+.+++.+++++
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~-----~~~~~~l~~~~~~~ipvV 84 (277)
T cd06319 22 KSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNS-----SAAVTLLKLAAQAKIPVV 84 (277)
T ss_pred HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCch-----hhhHHHHHHHHHCCCCEE
Confidence 345556688877665433322334556666666777776543221 123455567777888755
No 494
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=26.83 E-value=6e+02 Score=24.76 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCC-----cCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhcc
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSA-----HSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINR 272 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~-----h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~ 272 (438)
++|.|.+.....-+..++. +| ++-.|++.+.+ |. +.+-....|++...+| -.++-+.+.+
T Consensus 166 iLT~g~SrTV~~FL~~A~k-----k~-Rkf~viVaE~~p~~qgH~-~Ak~la~~giettVI~--------daaVfA~Msr 230 (353)
T KOG1465|consen 166 ILTLGSSRTVENFLKHAAK-----KG-RKFRVIVAEGAPNNQGHE-LAKPLAQAGIETTVIP--------DAAVFAMMSR 230 (353)
T ss_pred EEecCccHHHHHHHHHHHh-----cc-CceEEEEeecCCcccchH-hhHHHHHcCCeeEEec--------cHHHHHHhhh
Confidence 8999999888888888774 33 22456665433 22 2222224578766665 2445555555
Q ss_pred CcEEEEEecCCCCCcccc-C--HHHHHHHHHHcCCeEEEe
Q 013675 273 NTVLIVGSAPGFPHGIID-P--IQELGELALSHGTCLHVD 309 (438)
Q Consensus 273 ~t~~vv~~~~~~~tG~id-d--i~~I~~la~~~~i~lhVD 309 (438)
--+.|++++.-.+.|.+- | ...++..|++|-.+++|=
T Consensus 231 VnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~Vl 270 (353)
T KOG1465|consen 231 VNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVL 270 (353)
T ss_pred cceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEe
Confidence 456777777766666542 3 678899999999998873
No 495
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.75 E-value=2e+02 Score=27.45 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=27.5
Q ss_pred HHHHhhcCcEEEEeeCCCCCccCHHHHHHhhccCcEEEEEecCCCCCccccCHHHHHHHHHHcCCeE
Q 013675 240 DKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL 306 (438)
Q Consensus 240 ~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~~~t~~vv~~~~~~~tG~iddi~~I~~la~~~~i~l 306 (438)
.++++-.|.++...+.+.+.....+.++..++.++..|++..... .......+.+++.++++
T Consensus 21 ~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~-----~~~~~~l~~~~~~~iPv 82 (302)
T TIGR02634 21 VAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG-----QVLSNAVQEAKDEGIKV 82 (302)
T ss_pred HHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-----hHHHHHHHHHHHCCCeE
Confidence 334445566655544332222223444455555555555543211 01233344455566664
No 496
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=26.73 E-value=3.3e+02 Score=26.28 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=32.3
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCc-CcHHHHHhhcCcEEEEeeC
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAH-SAYDKAAQYFNIKLWRVPV 255 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h-~s~~~a~~~~Gi~v~~v~~ 255 (438)
++++|+|.+|...-.|+.-. ..|++ -.+++|.... .......+.+|.+++.++-
T Consensus 59 vv~~g~ssGN~g~alA~~a~---~~G~~-~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 59 VITVGAIQSNHARATALAAK---KLGLD-AVLVLREKEELNGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred EEEcCCchhHHHHHHHHHHH---HhCCc-eEEEecCCccCCCCHHHHHHcCCEEEEECc
Confidence 67877666666544333211 24432 4677777542 3344556899999998874
No 497
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.71 E-value=65 Score=30.34 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=44.8
Q ss_pred eEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhh-cCcEEEEeeCCCCCcc-CHHHHHHhhccCcE
Q 013675 198 NMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-FNIKLWRVPVDKEFRA-DVKAIKKYINRNTV 275 (438)
Q Consensus 198 ~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~-~Gi~v~~v~~~~~~~~-d~~~Le~~I~~~t~ 275 (438)
.+-.|.|||-.++-.... .| . ++++..+-+.-.-.... .+.+++ .|++ |.++|++.|.++-.
T Consensus 4 LvlgGTtE~r~la~~L~~------~g---~-v~~sv~t~~g~~~~~~~~~~~~v~------~G~lg~~~~l~~~l~~~~i 67 (249)
T PF02571_consen 4 LVLGGTTEGRKLAERLAE------AG---Y-VIVSVATSYGGELLKPELPGLEVR------VGRLGDEEGLAEFLRENGI 67 (249)
T ss_pred EEEechHHHHHHHHHHHh------cC---C-EEEEEEhhhhHhhhccccCCceEE------ECCCCCHHHHHHHHHhCCC
Confidence 566788888777655433 45 3 55554443322221111 112221 3556 78888888775532
Q ss_pred --EEEEecCCCCCccccCH-HHHHHHHHHcCCeEE
Q 013675 276 --LIVGSAPGFPHGIIDPI-QELGELALSHGTCLH 307 (438)
Q Consensus 276 --~vv~~~~~~~tG~iddi-~~I~~la~~~~i~lh 307 (438)
+|=+||| +-. .+ +.+.+.|++.|++++
T Consensus 68 ~~vIDATHP---fA~--~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 68 DAVIDATHP---FAA--EISQNAIEACRELGIPYL 97 (249)
T ss_pred cEEEECCCc---hHH--HHHHHHHHHHhhcCcceE
Confidence 2333333 211 12 345667777777643
No 498
>PRK10717 cysteine synthase A; Provisional
Probab=26.50 E-value=1.6e+02 Score=28.78 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=0.0
Q ss_pred CCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEee
Q 013675 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVP 254 (438)
Q Consensus 192 ~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~ 254 (438)
|..+ +.+++|..+..+|..+.+ .|+ +-.|++|...-.......+.+|.+++.++
T Consensus 64 g~~v--v~aSsGN~g~alA~~a~~------~G~-~~~vv~p~~~~~~k~~~~~~~GA~V~~~~ 117 (330)
T PRK10717 64 GGTI--VEGTAGNTGIGLALVAAA------RGY-KTVIVMPETQSQEKKDLLRALGAELVLVP 117 (330)
T ss_pred CCEE--EEeCCcHHHHHHHHHHHH------cCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEeC
No 499
>PLN02672 methionine S-methyltransferase
Probab=26.43 E-value=9e+02 Score=28.16 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred ecCCCCcchHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHHHHHhCCC--CCCCCCccceeEcCChHHHHHHHHH
Q 013675 135 YIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNK--EKASGGQVCGNMTSGGTESILLAVK 212 (438)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~a~l~g~~--~~~~~~~v~g~~t~ggt~a~~~al~ 212 (438)
+.+...++.....++......-....+.++.-.|...+..-+...+..+.|.+ +++ | ++.++-..|+.-+++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~ 467 (1082)
T PLN02672 394 FEDESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDN----V--VVFPSRAVAIENALR 467 (1082)
T ss_pred ccccccchhhccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccc----e--EEeccHHHHHHHHHH
Q ss_pred HHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcC----------cEEEEeeCCCCCccCHHHHHHhhcc-CcEEEEEec
Q 013675 213 SSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN----------IKLWRVPVDKEFRADVKAIKKYINR-NTVLIVGSA 281 (438)
Q Consensus 213 a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~G----------i~v~~v~~~~~~~~d~~~Le~~I~~-~t~~vv~~~ 281 (438)
.+.-++..- |+- ++..-+..|..+...-| +.|++.|-. -+-+.++|.. ++.+|+...
T Consensus 468 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 535 (1082)
T PLN02672 468 LFSPRLAIV-----DEH-LTRWLPKKWLTSLAIENATSDSKSDDVITVIEAPRQ------SDLVIELIKKLKPQVVVTGM 535 (1082)
T ss_pred hhChHHHhh-----hhh-hhccCCHHHHhHhhhhcccccCccCCeEEEEeCCCc------chHHHHHHHhCCCeEEEEec
Q ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEe
Q 013675 282 PGFPHGIIDPIQELGELALSHGTCLHVD 309 (438)
Q Consensus 282 ~~~~tG~iddi~~I~~la~~~~i~lhVD 309 (438)
..+.--+.--++.|.+.+++.|++++.|
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1082)
T PLN02672 536 ADFEMRTSTAFEHLLNVTAEIGARLFLD 563 (1082)
T ss_pred cchhhhhHHHHHHHHHHHHhhCcEEEEe
No 500
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=26.36 E-value=2e+02 Score=26.58 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCccceeEcCChHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCCcCcHHHHHhhcCcEEEEeeCCCCCccCHHHHHHhhc
Q 013675 192 GGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYIN 271 (438)
Q Consensus 192 ~~~v~g~~t~ggt~a~~~al~a~~~~~~~~~G~~~~~Viv~~~~h~s~~~a~~~~Gi~v~~v~~~~~~~~d~~~Le~~I~ 271 (438)
+..+ +..++|..+.-+|..+.. .|+ +-.+++|........+..+.+|.+++.++-+ +.-..+..++...
T Consensus 50 ~~~v--v~~ssGN~g~alA~~a~~------~g~-~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~ 118 (244)
T cd00640 50 KGVI--IESTGGNTGIALAAAAAR------LGL-KCTIVMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAE 118 (244)
T ss_pred CCEE--EEeCCcHHHHHHHHHHHH------cCC-CEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHH
Q ss_pred cCcEEEEEecCCCCCc
Q 013675 272 RNTVLIVGSAPGFPHG 287 (438)
Q Consensus 272 ~~t~~vv~~~~~~~tG 287 (438)
++...+.+...+|+.+
T Consensus 119 ~~~~~~~~~~~~n~~~ 134 (244)
T cd00640 119 EDPGAYYVNQFDNPAN 134 (244)
T ss_pred hCCCCEecCCCCCHHH
Done!