RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013675
(438 letters)
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 246 bits (631), Expect = 4e-77
Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 19/288 (6%)
Query: 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILL 209
E + N D + A E V+ M + LLG E+ASG TSGGTE+ LL
Sbjct: 80 ELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASG-----TFTSGGTEANLL 134
Query: 210 AVKSSRDYMRNKRG------ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK-EFRAD 262
A+ ++R+ R + +P ++ +AH +++KAA+Y + L RVP ++R D
Sbjct: 135 ALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRID 194
Query: 263 VKAIKKYINRNTVL--IVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFA 320
V A+++ I+ NT+ +VG+A G ID I+EL ++A +G LHVD GGF+LPF
Sbjct: 195 VDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFL 254
Query: 321 KKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE-IRKHQFVAVTEWSGGL 379
+ G +DF ++GV SI+VD HKYGLAP G VVL+R+ E +R+ A GG
Sbjct: 255 EPDGR----WDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGG 310
Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
+ T+ GSRPG +A L LG+EGY + +E++ + + L
Sbjct: 311 IPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEEL 358
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 230 bits (589), Expect = 8e-72
Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 26/283 (9%)
Query: 150 EACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILL 209
+A MF TN +F A+ E E + M LL + G +TSGGTE+ +
Sbjct: 38 KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY------GYITSGGTEANIQ 91
Query: 210 AVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKY 269
AV++ RN +P +++P SAH ++DKAA ++L R P+D ++R DVKA++
Sbjct: 92 AVRA----ARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDL 147
Query: 270 INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
I+ NT+ IVG A G +DPI EL ++AL +G LHVD GGFV+PF P
Sbjct: 148 IDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDP----PN 203
Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH-----QFVAVTEWSGGLYVSPT 384
FDFS+ GV SI++D HK GLAP +L+R+ ++ T
Sbjct: 204 FDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSK-------KQAT 256
Query: 385 VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
+ G+R G +A +A + LG+EGY + + ME + + + L
Sbjct: 257 LTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEEL 299
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 219 bits (560), Expect = 1e-67
Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 16/316 (5%)
Query: 112 VIEKLKEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVAR 171
V+E+LKE + +D+ + G + GS + +A MF TN +F +
Sbjct: 5 VLEELKEYRSEDLKYS---DGRIL--GSMCTNPHPIAVKAYDMFIETNLGDPGLFPGTKK 59
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
E EV+ LL + G + SGGTE+ + AV+++++ R ++ P +I+
Sbjct: 60 IEEEVVGSLGNLLHLPD------AYGYIVSGGTEANIQAVRAAKNLAREEKR--TPNIIV 111
Query: 232 PVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP 291
P SAH +++KAA+ ++L P+D+++ DVK ++ I+ NT+ IVG A G ID
Sbjct: 112 PESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD 171
Query: 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAP 351
I+EL ++AL +G LHVD GGFV+PF KK GY PPFDFS+ GV SI++D HK GL+P
Sbjct: 172 IEELSKIALENGIYLHVDAAFGGFVIPFLKK-GYNPPPFDFSLPGVQSITIDPHKMGLSP 230
Query: 352 KGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLE 411
+L+R++ K+ V + T+ G+R G A +A + LG+EGY +
Sbjct: 231 IPAGGILFRSKSYLKYLSVDAPYLTVK--KQATITGTRSGASAAATYAVIKYLGREGYRK 288
Query: 412 NTKAIMEVSESIQKGL 427
ME + + + L
Sbjct: 289 IVAECMENTRYLVEEL 304
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 217 bits (555), Expect = 3e-67
Identities = 88/293 (30%), Positives = 134/293 (45%), Gaps = 56/293 (19%)
Query: 147 LINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTES 206
L + A D + EAEV+ A L G G TSGG+ES
Sbjct: 16 LEMLTSAKNAIDFTW--DESPAATEMEAEVVNWLAKLFG----LPSEDADGVFTSGGSES 69
Query: 207 ILLAVKSSRDYMRNK------RGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFR 260
LLA+ ++RD R + RGI + ++ AH + +KAA Y ++K+ VPVD++ R
Sbjct: 70 NLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGR 129
Query: 261 ADVKAIKKYINR------NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314
D +A++ I+ N +++V +A G IDP++E+ +LA + LHVD GG
Sbjct: 130 MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189
Query: 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTE 374
F+LPF + DF ++ V SISVD HKYGL P G S VL R
Sbjct: 190 FLLPFPEPRHL-----DFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------- 230
Query: 375 WSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
WA L G++GY E+ I+++++ + + +
Sbjct: 231 -------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELI 264
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 107 bits (269), Expect = 2e-25
Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 16/243 (6%)
Query: 190 ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR-----GITRPEMIIPVSAHSAYDKAAQ 244
A + G T G +E+I+L + + R + +P +++ + ++K A+
Sbjct: 97 AKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR 156
Query: 245 YFNIKLWRVPVDKEFRA-DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE----LGELA 299
YF+++L VP+D D + + + ++ NT+ +V G + ++ L E
Sbjct: 157 YFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYN 216
Query: 300 LSHG--TCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVV 357
G +HVD GGF+ PF YP +DF + V SI+V HKYGL G V
Sbjct: 217 AKTGWDIPIHVDAASGGFIAPFV----YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWV 272
Query: 358 LYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIM 417
++R+ E + + + GG + T+ SRP + + + LG+EGY + + +
Sbjct: 273 IWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSL 332
Query: 418 EVS 420
+V+
Sbjct: 333 DVA 335
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 85.9 bits (213), Expect = 2e-18
Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 32/280 (11%)
Query: 173 EAEVIAMT--AALLG-NKEKASGGQVCGNMTSGGTESILLAVKSSRDYM------RNKRG 223
E E + M A +LG KE G+ G + G +ES LLA+ ++R K
Sbjct: 79 ELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPS 138
Query: 224 ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYI-----NRNTVLIV 278
+ + AHS+ +KAA ++L +P D+ + ++K I N V
Sbjct: 139 LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFV 198
Query: 279 GSAPGFP-HGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQ 335
+ G G DP+QELG++ + LHVD G F+ P + F ++
Sbjct: 199 CATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPE-------FRHWLFGIE 251
Query: 336 GVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRP----- 390
S S + HK+ L S + R++ + E+ G VA
Sbjct: 252 RADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIP 311
Query: 391 ---GGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
I W L S G EG + +E+++ + +
Sbjct: 312 LSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALV 351
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 65.8 bits (161), Expect = 9e-12
Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 41/264 (15%)
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
FE +V+ A L S G + T+GGTE L +R+ P+ +
Sbjct: 66 FERDVMNFFAELFKIPFNESWGYI----TNGGTEGNLYGCYLARELF--------PDGTL 113
Query: 232 PVS--AHSAYDKAAQYFNIKLWRVP--VDKEFRAD--VKAIKKYINRNTVLI--VGSAPG 283
S H + K A+ IK + + E D + IK+ N+ ++ +G+
Sbjct: 114 YYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTM- 172
Query: 284 FPHGIIDPIQELGELALSHGT---CLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSI 340
G ID I+E+ E+ G +H D L G +LPF PPF F+ G+ SI
Sbjct: 173 --TGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVN----NPPPFSFA-DGIDSI 225
Query: 341 SVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP---TVAGSRPGGLIAGA 397
++ HK+ +P +VL + ++ + V V Y+ T++GSR G
Sbjct: 226 AISGHKFIGSPMPCGIVLAK-KKYVERISVDVD------YIGSRDQTISGSRNGHTALLL 278
Query: 398 WAALMSLGQEGYLENTKAIMEVSE 421
WAA+ SLG +G + + +++++
Sbjct: 279 WAAIRSLGSKGLRQRVQHCLDMAQ 302
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 64.6 bits (158), Expect = 3e-11
Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 48/194 (24%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
TSG TE+I L S ++ E+++ H A + + A+ + +PV
Sbjct: 67 TSGTTEAINLVAISLGRSLKPGD-----EILVTEMEHHANLVPWQELAKRTGATVRVIPV 121
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
D D+ A++K + T L+ + G ++P++E+G+LA +G + VD
Sbjct: 122 DPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVD------ 175
Query: 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-----------LAPKGTSVVLYRNREI 364
+ Q V +DV G P G VLY
Sbjct: 176 -----------------AAQAVGHRPIDVQALGVDFLAFSGHKLYGPTGIG-VLY----G 213
Query: 365 RKHQFVAVTEWSGG 378
R+ + GG
Sbjct: 214 RRDLLEKLPPLLGG 227
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 63.3 bits (155), Expect = 6e-11
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQY-----FNIKLWRVP 254
TSG TES LA+K + RN + +I H A +Y F + +P
Sbjct: 67 TSGATESNNLAIKGAALAYRNAQK--GKHIITSAIEHPAVLNTCRYLERQGFEVT--YLP 122
Query: 255 VDKEFRADVKAIKKYINRNTVLI-VGSAPGFPH---GIIDPIQELGELALSHGTCLHVDL 310
VD D++ +++ + +T+L+ + A + G I PI E+GE+ G HVD
Sbjct: 123 VDSNGLVDLEQLEEALRPDTILVSIMHA----NNETGTIQPIAEIGEICKERGILFHVDA 178
Query: 311 C--LGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKH 367
+G K+ P D GV +S HK+G PKG LY +R
Sbjct: 179 VQAVG--------KI-----PIDLEELGVDLLSFSAHKFG-GPKGIG-ALYVRPGVRLE 222
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 60.9 bits (148), Expect = 4e-10
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAY 239
A ++G +E+ TSGGTES LA++S +NK+ I M S +
Sbjct: 53 AEMIGGEEQGI------YFTSGGTESNYLAIQSLLNALPQNKKHIITTPM----EHASIH 102
Query: 240 DKAAQY----FNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQEL 295
+ + +PVDK + +++ I +TVL G I PI E+
Sbjct: 103 SYFQSLESQGYTVTE--IPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEI 160
Query: 296 GELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGT 354
G L + H D C V F K P D G+ S+SV HK YG PKG
Sbjct: 161 GALLKKYNVLFHSD-C----VQTFGKL------PIDVFEMGIDSLSVSAHKIYG--PKGV 207
Query: 355 SVVLYRNREIRKHQ 368
V Y N ++R
Sbjct: 208 GAV-YINPQVRWKP 220
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 59.8 bits (145), Expect = 7e-10
Identities = 52/197 (26%), Positives = 72/197 (36%), Gaps = 24/197 (12%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---PVD 256
TSG TES LA+ K + +I H A + + + V PVD
Sbjct: 65 TSGATESNNLAILGLARAGEQK---GKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
+ R DV + I +T+L+ G I PI+E+ E+ +H HVD
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV--- 178
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWS 376
K D S + IS HK PKG ++ R R K + +
Sbjct: 179 --VGKIT------VDLSADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPLKPIM-FG 228
Query: 377 GGLYVSPTVAGSRPGGL 393
GG G RPG L
Sbjct: 229 GG-----QERGLRPGTL 240
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 57.2 bits (139), Expect = 6e-09
Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 49/182 (26%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYF---NIKLWRVPVD 256
TSGGTES A+KS+ KR I I H A Q+ K+ +PVD
Sbjct: 65 TSGGTESDNTAIKSALAAQPEKRHI-----ITTAVEHPAVLSLCQHLEKQGYKVTYLPVD 119
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
+E R D++ ++ I +T L+ G I PI+E+GE+A G H D
Sbjct: 120 EEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTD------- 172
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDV------------HKYGLAPKGTSVVLYRNREI 364
+VQ V I +D+ HK PKG LY I
Sbjct: 173 ----------------AVQAVGKIPIDLKEMNIDMLSLSGHKL-HGPKGVG-ALY----I 210
Query: 365 RK 366
RK
Sbjct: 211 RK 212
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 56.6 bits (137), Expect = 1e-08
Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 46/248 (18%)
Query: 197 GNMTSGGTESILLAVKSSRDYMRNK--------RGITRPEMI------------IPVS-- 234
G SGGT + + A+ +R N+ +G+ R + I VS
Sbjct: 162 GAFCSGGTVANITALWVAR----NRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSER 217
Query: 235 AHSAYDKAAQYFNI---KLWRVPVDKEFRADVKA----IKKYINRNT--VLIVGSAPGFP 285
H + KAA I L + D R DV A + +N + IVG A
Sbjct: 218 GHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVH 345
G IDP+ E+ ++A G HVD GG L + + + ++ S+++D H
Sbjct: 278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATL-LSNTYRHLLK----GIERADSVTIDAH 332
Query: 346 KYGLAPKGTSVVLYRN----REIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAL 401
K P G +VL+++ I H + + S L S T+ GSRPG + +A L
Sbjct: 333 KQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLG-SHTLEGSRPGMAML-VYAGL 390
Query: 402 MSLGQEGY 409
+G++GY
Sbjct: 391 HIIGRKGY 398
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 51.2 bits (123), Expect = 5e-07
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRV---PVD 256
TSG TES LA+K + ++K+ +I + H + ++ + + V PV
Sbjct: 66 TSGATESNNLAIKGVMHFYKDKK----KHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 121
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
+ D+ + I +T L+ A G+I P++E+GEL H D
Sbjct: 122 SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDA------ 175
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNRE 363
A+ +G P D GV +S+ HK PKG + R R
Sbjct: 176 ---AQAVGK--IPVDVDDLGVDLMSISGHKIY-GPKGVGALYVRRRP 216
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 51.0 bits (122), Expect = 7e-07
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN---IKLWRVPVD 256
TSG TES LA+K + ++K +I + H A +Y ++ +P
Sbjct: 70 TSGATESNNLAIKGIAHFYKSKGN----HIITSKTEHKAVLDTCRYLEREGFEVTYLPPK 125
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
D++ +K I +T+L+ G+I I +GE+ HVD
Sbjct: 126 SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS--- 182
Query: 317 LPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIR 365
K P + + V +S+ HK YG PKG LY R+ R
Sbjct: 183 --VGKI------PINVNELKVDLMSISGHKIYG--PKGIG-ALYVRRKPR 221
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 50.4 bits (121), Expect = 9e-07
Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 37/246 (15%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
T G TE++ L + ++ E+++ H + + + A+ K+ +P+
Sbjct: 90 TRGTTEALNLVARGLGRSLKP-----GDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
D + D+ A++K I T L+ S G ++P++E+ ELA HG + VD
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQA-- 202
Query: 316 VLPFAKKLGYPIP--PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVT 373
P D G ++ HK+ L P G VLY +E+ + +
Sbjct: 203 -----------AGHLPIDVQELGCDFLAFSGHKWLLGPTGIG-VLYVRKELLEELEPFLG 250
Query: 374 EWSGGLYVSPT------------VAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSE 421
YVS AG+ G AAL L + G E++E
Sbjct: 251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTE 310
Query: 422 SIQKGL 427
+ +GL
Sbjct: 311 YLLEGL 316
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCL 306
+++ V D E + IK+ I NT LIV S G I PI+E+GELA +G
Sbjct: 111 GVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIF- 169
Query: 307 HVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNR 362
F+L A+ G + P D + + ++ HK L P+GT + R
Sbjct: 170 --------FILDAAQTAG--VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG 215
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 45.9 bits (110), Expect = 2e-05
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 56/186 (30%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
T TE+I L NK G E++ V H + + + A+ KL VPV
Sbjct: 67 TRNTTEAINLVAYGLG--RANKPG---DEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV 121
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVDL 310
D + + D++A++K + T L+ H G I+P++E+GE+A G + VD
Sbjct: 122 DDDGQLDLEALEKLLTERTKLVA-----VTHVSNVLGTINPVKEIGEIAHEAGVPVLVDG 176
Query: 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDV------------HKYGLAPKGTSVVL 358
Q + VDV HK L P G VL
Sbjct: 177 A-----------------------QSAGHMPVDVQDLGCDFLAFSGHK-MLGPTGIG-VL 211
Query: 359 YRNREI 364
Y E+
Sbjct: 212 YGKEEL 217
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 46.0 bits (109), Expect = 3e-05
Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 199 MTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFN---IKLWRVP 254
+TS TES +K D + + +I H A + +++ +P
Sbjct: 65 ITSCATESNNWVLKGVYFDEILKG---GKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121
Query: 255 VDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGG 314
++++ + +++ I T L+ G+I PI+E+GE+ G H D
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDA---- 177
Query: 315 FVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRN 361
V K P D GV +S HK+ PKG + R
Sbjct: 178 -VQAIGKI------PVDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRK 216
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 44.8 bits (107), Expect = 6e-05
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV-- 255
T+GG+E+IL A+ + I P E+++P ++ Y+ A +K+ VPV
Sbjct: 94 TNGGSEAILFAMMA----------ICDPGDEILVPEPFYANYNGFATSAGVKI--VPVTT 141
Query: 256 --DKEFR-ADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHG 303
++ F + I+K I T I+ S PG P G++ + ++ L E+A H
Sbjct: 142 KIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHD 195
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 43.8 bits (104), Expect = 1e-04
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 24/171 (14%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV-SAHSAYDKAAQYFNIKLWRV---PV 255
TSG TES LA+K + + + K + II + H A + + + V
Sbjct: 72 TSGATESDNLAIKGAAHFYQKKG-----KHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF 315
D++ ++ + +T+L+ G+I I +GE+ G HVD
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQS-- 184
Query: 316 VLPFAKKLGYPIPPFDFSVQGVTSISVDVHK-YGLAPKGTSVVLYRNREIR 365
K+ P D S V +S HK YG PKG LY R+ R
Sbjct: 185 ----VGKV-----PIDLSKLKVDLMSFSAHKIYG--PKGIG-ALYVRRKPR 223
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 43.6 bits (103), Expect = 1e-04
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
+ SG + +I + + + + +N +++P Y A+ I KL+ + D
Sbjct: 100 LCSGCSHAIEMCIAALANAGQN--------ILVPRPGFPLYRTLAESMGIEVKLYNLLPD 151
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGE-LALSHGTCLHV--DLCLG 313
K + D+K ++ I+ T +V + P P G + Q L E LA++ CL + D G
Sbjct: 152 KSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYG 211
Query: 314 GFVLPFAKKLGYPIPPFDFSV 334
V A P+ +V
Sbjct: 212 DMVFSGATF--EPVASLSSNV 230
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 42.0 bits (98), Expect = 5e-04
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 37/259 (14%)
Query: 126 WQGKCSGTVYIGGSEAEGHF-SLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMT--AA 182
WQ Y + G ++N S+ T S A E E+I + A
Sbjct: 128 WQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFT------WLTSPAATELEIIVLDWLAK 181
Query: 183 LLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR-PEMIIPVS--AHSA 238
LL + S G G + G E++L+ V ++RD + K G T P++++ S HS+
Sbjct: 182 LLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS 241
Query: 239 YDKAA-----QYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGF--------P 285
+ KA NI+L + + +++++ I+ + L G P F
Sbjct: 242 FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD--LAKGFIPFFICATVGTTS 299
Query: 286 HGIIDPIQELGELALSHGTCLHVDLCLGG--FVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
+DP+ LG +A +G LHVD G + P +K F ++ S +++
Sbjct: 300 SAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRK-------FIDGIENADSFNMN 352
Query: 344 VHKYGLAPKGTSVVLYRNR 362
HK+ A + S + ++R
Sbjct: 353 AHKWLFANQTCSPLWVKDR 371
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 42.1 bits (99), Expect = 5e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 230 IIPVSAHSAYDKAAQYFNIKLWRV---PVDKEFRADVKAIKKYINR------NTVLIVGS 280
++P + H ++ KAA I L +V PVD +R D+ ++K I + + +VG
Sbjct: 226 LVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGV 285
Query: 281 APGFPHGIIDPIQELGELA---LSHGT--CLHVDLCLGGF 315
G +D I ++ L + G LHVD GG+
Sbjct: 286 VGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY 325
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 41.2 bits (97), Expect = 9e-04
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNI--KLWRVPVD 256
+TSG +++I + +++ + N +++P YD A + + +L+ + +
Sbjct: 101 LTSGCSQAIEICIEALANPGAN--------ILVPRPGFPLYDTRAAFSGLEVRLYDLLPE 152
Query: 257 KEFRADVKAIKKYINRNTVLIVGSAPGFPHGII---DPIQELGELALSHGTCLHVDLCLG 313
K++ D+ ++ + TV IV P P G + D +Q++ E+A G + D G
Sbjct: 153 KDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYG 212
Query: 314 GFVLPFAK 321
V A
Sbjct: 213 HMVFGDAP 220
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 39.3 bits (92), Expect = 0.001
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 172 FEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMII 231
E+ A LL GT + A+ + + + I+
Sbjct: 1 KLEELEEKLARLLQPGNDK------AVFVPSGTGANEAALLA---LLGPGDEV-----IV 46
Query: 232 PVSAH-SAYDKAA--QYFNIKLWRVPVDKEFRADVKAIKKYIN-RNTVLIVGSAPGFPHG 287
+ H S Y AA V DV +++ N LIV + G
Sbjct: 47 DANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGG 106
Query: 288 IIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIP--PFDFSVQGVTSISVDVH 345
++ P++E+ ++A +G L VD + G IP D +H
Sbjct: 107 VLVPLKEIRKIAKEYGILLLVD---AASAGGASPAPGVLIPEGGADVVTFS-------LH 156
Query: 346 KYGLAPKGTSVVLYR 360
K L +G VV+ +
Sbjct: 157 KN-LGGEGGGVVIVK 170
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 40.3 bits (95), Expect = 0.001
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256
+T+G E++ LA + P E++IP + +Y+ A + K VP+D
Sbjct: 94 VTAGAKEALFLAF----------LALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLD 143
Query: 257 KE---FRADVKAIKKYINRNTVLIVGSAPGFPHG-IIDP--IQELGELALSHGTCLHVDL 310
+E F+ D++ ++ I T I+ ++P P G + ++ + ELA H + D
Sbjct: 144 EEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE 203
Query: 311 CLGGFV 316
V
Sbjct: 204 IYEELV 209
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 39.9 bits (94), Expect = 0.002
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 218 MRNKRGITRPEMIIPVSAHSAYDK----AAQYFNIKLWRVPVDKEFRADVKAIKKYINRN 273
+ R ++++P SAH + I++ VP D+ D++A+K+ ++
Sbjct: 100 AAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159
Query: 274 TVLIVGSAPGFPHGII-DPIQELGELALSHGTCLHVD 309
++ P G+ D I+E+ ++A S G ++VD
Sbjct: 160 VAALMVQYPNT-LGVFEDLIKEIADIAHSAGALVYVD 195
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 39.5 bits (92), Expect = 0.003
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 168 SVARFEAEVIAMT--AALLGNKEK-ASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGI 224
S A E E+I + A LL E+ S G G + +E++L+ + ++RD + K G
Sbjct: 117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176
Query: 225 TRPEMIIPVSA---HSAYDKAAQYF-----NIKLWRVPVDKEFRADVKAIKKYINRNTVL 276
E ++ ++ HSA KA Q N +L + + + + + I+ + L
Sbjct: 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTD--L 234
Query: 277 IVGSAPGF--------PHGIIDPIQELGELALSHGTCLHVDLCLGG 314
G P F +DP+ ELG++A S+G HVD G
Sbjct: 235 SSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 38.8 bits (91), Expect = 0.004
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 53/185 (28%)
Query: 200 TSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSA----YDKAAQYFNIKLWRVPV 255
T G TESI L S D K G E++I H A + A+ L +P+
Sbjct: 86 TRGTTESINLVAYSWGD-SNLKAG---DEIVISEMEHHANIVPWQLLAERTGATLKFIPL 141
Query: 256 DKEFRADVKAIKKYINRNTVLIVGSAPGFPH-----GIIDPIQELGELALSHGTCLHVDL 310
D + D+ ++K + T L+ H G ++P++E+ +LA G + VD
Sbjct: 142 DDDGTLDLDDLEKLLTEKTKLV-----AITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDG 196
Query: 311 CLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYG-----------LAPKGTSVVLY 359
Q V + VDV P G VLY
Sbjct: 197 A-----------------------QAVPHMPVDVQALDCDFYVFSGHKMYGPTGIG-VLY 232
Query: 360 RNREI 364
E+
Sbjct: 233 GKEEL 237
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 37.8 bits (89), Expect = 0.008
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 199 MTSGGT---ESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAY-DKAAQYF---NIKLW 251
M G T E+ L+AV+ ++ R ++++ + H Y + Y I++
Sbjct: 134 MYDGATALAEAALMAVRITK----------RKKVLVSGAVHPEYREVLKTYLKGQGIEVV 183
Query: 252 RVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHG 303
VP + D++A++ ++ +T +V P F G+I+ ++E+ E+A + G
Sbjct: 184 EVPYEDG-VTDLEALEAAVDDDTAAVVVQYPNF-FGVIEDLEEIAEIAHAGG 233
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 35.5 bits (83), Expect = 0.048
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE--FRADVKAIKKYINRNT-VLIVGSAPGF 284
E+IIP +Y + + VP +E F+ V+ ++ I T LI+ S P
Sbjct: 117 EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNS-PSN 175
Query: 285 PHG-IIDP--IQELGELALSHG 303
P G + P ++ + ++A+ H
Sbjct: 176 PTGAVYSPEELEAIADVAVEHD 197
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 35.6 bits (82), Expect = 0.050
Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 39/271 (14%)
Query: 171 RFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMI 230
+FE V+ A L + + G +T+ GTE L + R+ P+ I
Sbjct: 66 QFEVGVLDWFARLW----ELEKDEYWGYITTCGTEGNLHGILVGREVF--------PDGI 113
Query: 231 IPVSAHSAYD--KAAQYFNIKLWRVPVDKEFRADVKAIKKYI--NRNTVLIVGSAPGFP- 285
+ S S Y KAA+ + ++ +VP D +++ + NR+ I+ G
Sbjct: 114 LYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTV 173
Query: 286 HGIIDPIQELGELALSHGTC-----LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSI 340
G +D + + + G +H D L G ++PF + P F + + S+
Sbjct: 174 KGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR----APEVTFR-KPIGSV 228
Query: 341 SVDVHKYGLAPKGTSVVLYRNREI----RKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAG 396
SV HK+ P V L R + + + +++ T+ GSR G
Sbjct: 229 SVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNS--------RDATIMGSRNGHAPLY 280
Query: 397 AWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
W L G G + + M + ++ L
Sbjct: 281 LWYTLRRKGYRGIKRDVQHCMRNAHYLKDRL 311
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 34.2 bits (79), Expect = 0.11
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 233 VSAHSAYD---KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII 289
V+A Y+ +AA + +VP+ + DVKA+ + N LI P P G +
Sbjct: 123 VTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLA-ADPNAGLIYICNPNNPTGTV 181
Query: 290 DPIQELGELALSH---GTCLHVD 309
P ++ E L++ G+ L VD
Sbjct: 182 TPRADI-EWLLANKPAGSVLLVD 203
>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism].
Length = 496
Score = 34.6 bits (80), Expect = 0.12
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 208 LLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIK 267
LLA+ R Y ++ R +IP SAH +A K+ V D+ D+ ++
Sbjct: 142 LLAI---RAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLR 198
Query: 268 KYINRNTVLIVGSAPGFPHGIIDP-IQELGELALSHGTCLHVD 309
N ++ + P G+ + I+E+ E+ G ++ D
Sbjct: 199 AKAEDNLAALMITNPS-TLGVFEEDIREICEIVHEAGGQVYYD 240
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 33.7 bits (78), Expect = 0.16
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG 287
E+IIP S Y+ +A+ K +++F DV ++ I T +I P P G
Sbjct: 113 EVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTG 172
Query: 288 IIDPIQEL 295
+ P +++
Sbjct: 173 NLIPEEDI 180
>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
Length = 353
Score = 33.1 bits (76), Expect = 0.28
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 292 IQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGL-A 350
++GELA HG LH+D G + + LG P+ V+ S+SV + K GL A
Sbjct: 160 TDKVGELAKRHGLKLHID---GARIFNASVALGVPV---HRLVKAADSVSVCLSK-GLGA 212
Query: 351 PKGTSVV-----LYRNREIRK 366
P G+ +V + + + +RK
Sbjct: 213 PVGSVIVGSKSFIRKAKRLRK 233
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 32.6 bits (75), Expect = 0.37
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 245 YFNIKLW-------RVPVDKE----FRADVKAIKKYINRNTVLIVGSAPGFPHGIIDP-- 291
YFN K+W V + + D A + I T I P P G++ P
Sbjct: 124 YFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPE 183
Query: 292 -IQELGELALSHGTCLHVD 309
+ EL +LA HG L +D
Sbjct: 184 LLHELYDLARRHGIALILD 202
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 32.0 bits (73), Expect = 0.56
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG 287
++IIP + Y++ A++F ++ + P D E +++ + RN+V+ + P P G
Sbjct: 79 KVIIPRHTYGEYERVARFFAARIIKGPNDPE------KLEELVERNSVVFFCN-PNNPDG 131
Query: 288 IIDPIQELGEL 298
+EL L
Sbjct: 132 KFYNFKELKPL 142
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 31.8 bits (72), Expect = 0.76
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE--FRADVKAIKKYINRNTVLIVGSAPGFP 285
E+IIP A Y + A+ K R+P+ +E F+ D + + I + T +IV + P P
Sbjct: 119 EVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNP 178
Query: 286 HGII 289
G
Sbjct: 179 TGAT 182
>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent
enzyme EgtE. Members of this protein family are the
pyridoxal phosphate-dependent enzyme EgtE, which
catalyzes the final step in the biosynthesis of
ergothioneine [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 370
Score = 31.7 bits (72), Expect = 0.82
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 242 AAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTV-LIVGSAPGFPHGIIDPIQELGELAL 300
AA F ++ +PVD + R DV + + L+ + G G + P + EL
Sbjct: 113 AAHGFEVRE--LPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTVQPAAAVAELCR 170
Query: 301 SHGTCLHVDLCLG 313
+ G L VD
Sbjct: 171 AAGVPLVVDAAQA 183
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 31.3 bits (71), Expect = 1.1
Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 35/227 (15%)
Query: 197 GNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD--KAAQYFNIKLWRVP 254
G +T+ GTE L + R+ P+ I+ S S Y KAA+ + ++ +V
Sbjct: 155 GYITNCGTEGNLHGILVGREVF--------PDGILYASRESHYSVFKAARMYRMECVKVD 206
Query: 255 --VDKEFR-ADVKAIKKYINRNTVLIVGSAPGFP-HGIIDP----IQELGELALSHGT-C 305
V E AD KA K N++ I+ G G +D I+ L E S
Sbjct: 207 TLVSGEIDCADFKA-KLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFY 265
Query: 306 LHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIR 365
+H D L G ++PF K+ P F + + S+SV HK+ P V + R
Sbjct: 266 IHCDGALFGLMMPFVKR----APKVTFK-KPIGSVSVSGHKFVGCPMPCGVQITR----M 316
Query: 366 KHQFVAVTEWSGGLYVS---PTVAGSRPGGLIAGAWAALMSLGQEGY 409
+H V + Y++ T+ GSR G W L G G+
Sbjct: 317 EHINVLSSNVE---YLASRDATIMGSRNGHAPIFLWYTLNRKGYRGF 360
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 31.0 bits (70), Expect = 1.2
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPV- 255
+TSG T++I +A+ + RP +++P Y+ A + ++++ V +
Sbjct: 101 ITSGCTQAIDVALSM----------LARPGANILLPRPGFPIYELCAAFRHLEVRYVDLL 150
Query: 256 -DKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELA 299
+K + D+ A++ ++NTV +V PG P G + Q L ++A
Sbjct: 151 PEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIA 195
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 30.7 bits (70), Expect = 1.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 233 VSAHSAYDKAAQYFNIKLWRVPVDKEF--RADVKAIKKYINRNTVLIVGSAPGFPHGIID 290
VS+ Y F+ L R+ ++ F D + + I+ NT + G P +
Sbjct: 105 VSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVL 164
Query: 291 PIQELGELALSHGTCLHVD 309
I+ + E+A HG L VD
Sbjct: 165 DIEAIAEIAHRHGVPLIVD 183
>gnl|CDD|111105 pfam02175, 7TM_GPCR_Srb, Serpentine type 7TM GPCR chemoreceptor
Srb. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srb is part of the Sra
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 236
Score = 30.2 bits (68), Expect = 2.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 12 RFRASANSFLSQYEPVILLLAPLLTLLVARV-LQSFLDAVREKGFKQTFVAFFMSSIKLV 70
RF A + YE LL P+L L+ + L + R + F F++F +
Sbjct: 110 RFFAMKMA--ETYEKTRTLLGPVLVFLLIIIDLTTVYMIHRNENFDAGFISFVIFPSTEA 167
Query: 71 PGVNKYI 77
NK++
Sbjct: 168 LTFNKFL 174
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 30.1 bits (68), Expect = 2.1
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 199 MTSGGTESILLAVKSSRDYMRNKRGI--TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVD 256
+T+G TES+ L + R ++ P +I D A F ++ VP+
Sbjct: 88 ITAGATESLYLVM---RAFLSPGDNAVTPDPGYLII-------DNFASRFGAEVIEVPIY 137
Query: 257 KE---FRADVKAIKKYINRNTVLIVGSAPGFPHGI---IDPIQELGELALSHGTCL 306
E ++ + +K+ ++ NT LI P P G + I+E E+A + L
Sbjct: 138 SEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFL 193
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 29.9 bits (68), Expect = 2.9
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 247 NIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG-IIDP--IQELGELALSHG 303
+ W++ + + D+ +++ + NT LI + P G ++D ++E+ E+A S
Sbjct: 127 EVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186
Query: 304 TCLHVD 309
+ D
Sbjct: 187 AYVLSD 192
>gnl|CDD|225877 COG3340, PepE, Peptidase E [Amino acid transport and metabolism].
Length = 224
Score = 29.3 bits (66), Expect = 3.3
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 201 SGGTESILLAVKSSRDYMRNK-RGITRPEMIIP----VSAHSAYDKAAQYFNIKLWRVPV 255
S T S ++ ++ N +G + IP S Y + + KL
Sbjct: 7 SSSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66
Query: 256 DKE-FRADVKAIKKYINRNTVLIVGSAPGF-------PHGIIDPIQE 294
+ + + AI+ + + ++ VG F G+ D I+E
Sbjct: 67 ELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRE 113
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 29.3 bits (66), Expect = 4.1
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 224 ITRP--EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSA 281
IT P E+I+ + ++ A + VP D ++ +AI++ I T IV +
Sbjct: 109 ITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTIS 168
Query: 282 PGFPHGIIDP---IQELGELALSHG 303
P P G++ P ++ + ++ HG
Sbjct: 169 PNNPTGVVYPEALLRAVNQICAEHG 193
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 29.3 bits (66), Expect = 4.3
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 228 EMIIPVSAHSA----YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPG 283
E+I+ V+ H + + AQ L V + + DV+ +K+ ++ T L+
Sbjct: 124 EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVA----- 178
Query: 284 FPH-----GIIDPIQELGELALSHGTCLHVDLC 311
H G I P++++ A + G + VD C
Sbjct: 179 THHVSNVLGSILPVEDIVHWAHAVGAKVLVDAC 211
>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1.
Length = 462
Score = 29.3 bits (65), Expect = 4.3
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 224 ITRPE--MIIPVSAHSAYDKAAQYFNIKLWRVPV--DKEFRADVKAIKKYINRNTVLIVG 279
+ RP +++P YD A Y +++ + + +KE+ D++ I+ + NTV +V
Sbjct: 151 LARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVV 210
Query: 280 SAPGFPHGII---DPIQELGELALSHG 303
P P G + D ++++ E A G
Sbjct: 211 INPNNPCGNVYSHDHLKKVAETARKLG 237
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 29.0 bits (66), Expect = 5.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 253 VPVDKE-FRADVKAIKKYINRNT-VLIVGSAPGFPHGIIDPIQELGELA 299
VP D + F+ D+ A++ I T +I+ S P P G++ + L LA
Sbjct: 147 VPTDTDTFQPDLDALEAAITPKTKAVIINS-PNNPTGVVYSEETLKALA 194
>gnl|CDD|218871 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localise to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 557
Score = 28.8 bits (65), Expect = 6.2
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 81 KQKVVDKMQSGVKSKREGWWTELPRAGLGVGVIEKL 116
K K +D ++ V+ + E V V+E L
Sbjct: 76 KDKFLDALEESVEERFEECRERFLGDPDLVQVLENL 111
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 28.4 bits (64), Expect = 6.9
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 175 EVIAMTAALLGNKEKASGGQVC-GNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPV 233
E+ A A G + V GN G E I L V++ + ++IP
Sbjct: 61 ELRAALAEYYGVVDPE---NVLVGN---GSDELIELLVRAFVEPGD--------TVLIPE 106
Query: 234 SAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQ 293
S Y+ AAQ ++ +VP+ EFR D+ AI I T L+ P P G + P +
Sbjct: 107 PTFSMYEIAAQLAGAEVVKVPLK-EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPRE 165
Query: 294 ELGELA 299
EL L
Sbjct: 166 ELRALL 171
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 28.5 bits (64), Expect = 6.9
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 287 GIIDPIQELGELALSHGTCLHVDLCLGGFVLPF-AKKLGY 325
GI++P++ + ++A SHG L VD +P ++L
Sbjct: 139 GILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDV 178
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 28.3 bits (64), Expect = 7.4
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 233 VSAHSAYDKAAQYFNIKLWRVPVDKEFR--ADVKAIKKYINRNTVLIVGSAPGFPHGIID 290
V++ Y + F L ++ ++ F D +A++ I T L+ +P P +
Sbjct: 83 VASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVV 142
Query: 291 PIQELGELALSHGTCLHVD 309
I+ + ELA HG L VD
Sbjct: 143 DIEAIAELAHEHGALLVVD 161
>gnl|CDD|171585 PRK12566, PRK12566, glycine dehydrogenase; Provisional.
Length = 954
Score = 28.7 bits (64), Expect = 8.3
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 195 VCGNMTSG--GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWR 252
+C SG G + LLA+ R Y R++ R +IP SAH +AQ +++
Sbjct: 561 ICMQPNSGAQGEYAGLLAI---RRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVI 617
Query: 253 VPVDKEFRADVKAIKKYI----NRNTVLIVGSAPGFP--HGIIDP-IQELGELALSHGTC 305
V D + D+ +K +R + L++ +P HG+ + I+E+ E+ HG
Sbjct: 618 VECDPDGNVDLDDLKAKAAAAGDRLSCLMI----TYPSTHGVYEEGIREICEVVHQHGGQ 673
Query: 306 LHVD 309
+++D
Sbjct: 674 VYMD 677
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 28.5 bits (64), Expect = 8.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGF-----VL 317
+ AI +Y++ +LIVG+ +++ LAL +G + L GGF V+
Sbjct: 105 LDAILRYLDPGGLLIVGNR-----------EDIQLLALENGNAV---LVTGGFDVSDEVI 150
Query: 318 PFAKKLGYPI 327
A + G P+
Sbjct: 151 KLANEKGLPV 160
>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional.
Length = 377
Score = 28.2 bits (63), Expect = 9.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 261 ADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
++++ +++ I NT I P P I I+++ +A G VD
Sbjct: 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVD 170
>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 425
Score = 28.3 bits (63), Expect = 9.9
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 252 RVPVDKEFRA--DVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVD 309
R+ ++ F A D+ A++ I+ T + + G P G I IQ L + A HG L VD
Sbjct: 120 RIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVD 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,423,112
Number of extensions: 2208363
Number of successful extensions: 2375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 75
Length of query: 438
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 338
Effective length of database: 6,502,202
Effective search space: 2197744276
Effective search space used: 2197744276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)