RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013675
(438 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 192 bits (487), Expect = 8e-57
Identities = 70/336 (20%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 117 KEEKGKDVVWQGKCSGTVYIGGSEAEGHFSLIN--------EACSMFAHTNPLHLDIFQS 168
E DV +Q + +Y+ G+ + + + + + N + + +
Sbjct: 32 LHEMRDDVAFQ-IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQ 90
Query: 169 VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKR----GI 224
A + + M A L GQ G T G +E+ +L + + R +
Sbjct: 91 SAAIDLRCVNMVADLWHAPA-PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP 149
Query: 225 TRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE-FRADVKAIKKYINRNTVLIVGSAPG 283
T ++ + K A+Y++++L +P+ D K + + + NT+ +V +
Sbjct: 150 TDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGV 209
Query: 284 FPHGIIDPIQ------ELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGV 337
G + Q + + +H+D GGF+ PF P +DF + V
Sbjct: 210 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF----VAPDIVWDFRLPRV 265
Query: 338 TSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGA 397
SIS HK+GLAP G V++R+ E + V ++ GG + + SRP G +
Sbjct: 266 KSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQ 325
Query: 398 WAALMSLGQEGYLENTKAIMEVSESIQKGLVLFPMF 433
+ + LG+EGY + A +V+ + + +
Sbjct: 326 YYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPY 361
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 140 bits (354), Expect = 7e-38
Identities = 48/344 (13%), Positives = 92/344 (26%), Gaps = 49/344 (14%)
Query: 102 ELPRAGLG-VGVIEKLKEEKGKD-VVWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
+ P G + L E D + G C E +L+ F H
Sbjct: 18 KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGER----EGRVASALVARRHYRFIHGI 73
Query: 160 PLHLDIFQS---------VARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLA 210
DI + + ++ L G A + T L
Sbjct: 74 GRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA-----SCFVVPMATGMSLTL 128
Query: 211 VKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADV---- 263
+ + +I P + K+ + + V E R D+
Sbjct: 129 CFLTL----RHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVE 184
Query: 264 KAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKL 323
I++ + + + + F + D ++EL + ++ V+ G
Sbjct: 185 AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL- 243
Query: 324 GYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSP 383
V + + + K + P G +++ N + +S
Sbjct: 244 ----IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD-------------ISK 286
Query: 384 TVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
G L+SLG GY + K E+ + L
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL 330
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 139 bits (352), Expect = 2e-37
Identities = 56/392 (14%), Positives = 125/392 (31%), Gaps = 43/392 (10%)
Query: 68 KLVPGVNKYIE-AEKQKVVDKMQSGVKSKREGWWTELPRAGLGV-GVIEKLKEEKGKDVV 125
++V + Y+E E ++V +Q G R P+ +++ +++ V
Sbjct: 12 EMVDYMADYLEGIEGRQVYPDVQPG--YLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 126 -WQ-GKCSGTVYIGGSEAEGHFSLINEACSMFAHTNPLHLDIFQSVARFEAEVIAMTAAL 183
W S + +++ + + E ++ +
Sbjct: 70 HWHSPYFFAYFPTASS----YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKM 125
Query: 184 LGNKEKA---SGGQVCGNMTSGGTESILLAVKSSRDYMRNKRG-----------ITRPEM 229
L E G+ G + +E+ L+A+ ++R + + + +
Sbjct: 126 LQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185
Query: 230 IIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNT------VLIVGSAPG 283
AHS+ ++A +KL +P D +F A+++ + R+ +V +
Sbjct: 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGT 245
Query: 284 FPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVD 343
D + E+G + LHVD G + V+ S + +
Sbjct: 246 TSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEF-----RHLLNGVEFADSFNFN 300
Query: 344 VHKYGLAPKGTSVVLYRNREIRKHQFVAVTEW-----SGGLYVSPTVAGSRPGGLIAGA- 397
HK+ L S + + R F + G ++ P G +
Sbjct: 301 PHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSL 360
Query: 398 --WAALMSLGQEGYLENTKAIMEVSESIQKGL 427
W G +G + +++S + +
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFV 392
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 116 bits (291), Expect = 3e-29
Identities = 56/338 (16%), Positives = 110/338 (32%), Gaps = 40/338 (11%)
Query: 102 ELPRAGLGVGVIEK-LKEEKGKDV-VWQGKCSGTVYIGGSEAEGHFSLINEACSMFAHTN 159
++P G+ I+ LK D + ++ + E S F H
Sbjct: 37 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSK----IHEELSSGFCHGI 92
Query: 160 PLHLDIF--QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDY 217
++ Q A + + A+T +L + K G V T T + S+
Sbjct: 93 GRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAA-- 150
Query: 218 MRNKRGITRPEMIIPVSAHSAYDKAAQYFNIK---LWRVPVDKEFRADVKAIKKYINR-- 272
++ +I P ++H + KA + + + V V+ I+ I +
Sbjct: 151 ---RKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207
Query: 273 ---NTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPP 329
N ++ + FP D I E+ ++ ++ ++ L
Sbjct: 208 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ---NNYYLEKLKKA 264
Query: 330 FDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGSR 389
F + V ++ K L P G +V + E K +S + G
Sbjct: 265 FKY---RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-------------ISLSYPGRA 308
Query: 390 PGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
+ +L+S+G + YLE K + + + L
Sbjct: 309 SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 346
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 58.0 bits (139), Expect = 7e-10
Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 24/247 (9%)
Query: 181 AALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYD 240
A L+G A ++ TSG TES LA+K + ++ + K+G A
Sbjct: 58 ADLVG----ADPREIV--FTSGATESDNLAIKGAANFYQ-KKGKHIITSKTEHKAVLDTC 110
Query: 241 KAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELAL 300
+ + ++ + + D+K ++ + +T+L+ G++ I +GE+
Sbjct: 111 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR 170
Query: 301 SHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR 360
+ G HVD P D S V +S HK PKG + R
Sbjct: 171 ARGIIYHVDAT-----------QSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVR 218
Query: 361 NREIRKHQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVS 420
RK + + GG + +G+ P I G + +E + + +
Sbjct: 219 ----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG-MGEAYRIAKEEMATEMERLRGLR 273
Query: 421 ESIQKGL 427
+ G+
Sbjct: 274 NRLWNGI 280
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 47.9 bits (113), Expect = 1e-06
Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 14/288 (4%)
Query: 146 SLINEACSMFAHTNPLHLDIFQSVARFEA--EVIAMTAALLGNKEKASGGQVCGNMTSGG 203
L EA +FA +P + E+ AL G + G
Sbjct: 80 KLHEEAARLFADLHPYQDPR-TAQGALRLMWELGEYLKALTGM-------DAITLEPAAG 131
Query: 204 TESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRADV 263
L + R Y ++ +++ + + A R
Sbjct: 132 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVD 191
Query: 264 KAIKKY-INRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKK 322
K + + ++ + P I E+ L G L+ D ++ +A+
Sbjct: 192 LEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARP 251
Query: 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYR---NREIRKHQFVAVTEWSGGL 379
++ ++ G P G L + + + ++
Sbjct: 252 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPK 311
Query: 380 YVSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIMEVSESIQKGL 427
+ + + AWA + +LG EG + + + +++ L
Sbjct: 312 SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELL 359
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 42.2 bits (98), Expect = 8e-05
Identities = 35/275 (12%), Positives = 71/275 (25%), Gaps = 50/275 (18%)
Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
++ + + L + G + + Y + K G +
Sbjct: 75 RNYYDLKDKA----KELFN-YDYII-------PAHQGRGAENILFPVLLKYKQ-KEGKAK 121
Query: 227 PEMIIPVS------AHSAYDKAAQYFNIKLWRV----PVDKEFRADVKAIKKYINRNTVL 276
+ I AH + + D + D+K +K+ I ++
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 277 IVGSAPGFPHGI--------IDPIQELGELALSHGTCLHVDLCLGGFVLPFAK------- 321
+ + + ++E+ E+A HG + +D F K
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 322 -KLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLY 380
+ + ++S K +V R+ E
Sbjct: 242 NATIKEVIFDMYKYADALTMSA---KKDPLLNIGGLVAIRDNEEIFTLARQR-------- 290
Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKA 415
P GGL AA++ +EG E
Sbjct: 291 CVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLH 325
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 41.1 bits (95), Expect = 2e-04
Identities = 22/278 (7%), Positives = 68/278 (24%), Gaps = 38/278 (13%)
Query: 167 QSVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITR 226
+S V + G + T G + + + ++G+ R
Sbjct: 74 RSYYALAESV----KNIFG-YQYTI-------PTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 227 PEMIIPVSAH-------------------SAYDKAAQYFNIKLWRVPVDKEFRADVKAIK 267
+M+ + ++ R +
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 268 KYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLC-----LGGFVLPFAKK 322
+ I ++ G + ++ + +A + + +D A+
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 323 LGYPIPPFDFSV-QGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFV-AVTEWSGGLY 380
+ I + +++ K + P G + + + + + G
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFP 301
Query: 381 VSPTVAGSRPGGLIAGAWAALMSLGQEGYLENTKAIME 418
+ G L G + + + + +++
Sbjct: 302 TYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 39.0 bits (90), Expect = 8e-04
Identities = 30/270 (11%), Positives = 59/270 (21%), Gaps = 41/270 (15%)
Query: 168 SVARFEAEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRP 227
+ E V L G + T G + L + + +
Sbjct: 76 NFYHLEKTV----KELFG-FKHIV-------PTHQGRGAENLLSQLAIK--PGQYVAGNM 121
Query: 228 EMIIPVSAHSAYDKAAQYFNIKLWRVPVDKE---FRADVKAIKKYINRNTVLIVG----- 279
D+ + I +
Sbjct: 122 YFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLA 181
Query: 280 ---SAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFVLPFAKKLGYP--------IP 328
+ G + ++ + E+A ++G + D F K+ I
Sbjct: 182 VTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIV 241
Query: 329 PFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVSPTVAGS 388
FS ++S K + + E+ V + G G
Sbjct: 242 HEMFSYADGCTMS---GKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEG-----MPSYGG 293
Query: 389 RPGGLIAGAWAALMSLGQEGYLENTKAIME 418
G + L Q Y+E+ +
Sbjct: 294 LAGRDMEAMAIGLREAMQYEYIEHRVKQVR 323
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 37.0 bits (84), Expect = 0.003
Identities = 24/208 (11%), Positives = 44/208 (21%), Gaps = 14/208 (6%)
Query: 174 AEVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKS-SRDYMRNKRGITRPEMIIP 232
V+ T A+ + + + GT + + NK +
Sbjct: 39 QRVLKNTRAVFKSAAASKSQPFV--LAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFS 96
Query: 233 VSAHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPI 292
++ + + + V +
Sbjct: 97 DRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 156
Query: 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK 352
S T VD F+F GV K AP
Sbjct: 157 ISQAIKQTSPETFFVVDAVCSIGCE-----------EFEFDEWGVDFALTASQKAIGAPA 205
Query: 353 GTSVVLYRNREIRKHQFVAVTEWSGGLY 380
G S+ L +R + + G +
Sbjct: 206 GLSISLCSSRFMDYALNDSKNGHVHGYF 233
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 37.0 bits (85), Expect = 0.004
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
+ I ++GN V G G T+ I V S M +++
Sbjct: 107 KTIKELHEVVGNAAAKDRYIVFGV---GVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGII 289
+ + + +YF+ K + + N + + ++P P G++
Sbjct: 164 FYPVFREQTKYFDKK------GYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL 212
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 35.2 bits (79), Expect = 0.014
Identities = 25/252 (9%), Positives = 64/252 (25%), Gaps = 28/252 (11%)
Query: 175 EVIAMTAALLGNKEKASGGQVCGNMTSGGTESILLAVKSSRDYMRNKRGITRPEMIIPVS 234
++ AL AS G + G+ ++ + S+ ++ +
Sbjct: 37 QIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMV 92
Query: 235 AHSAYDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHGIIDPIQE 294
+ A + D + + I+ ++ + G + I +
Sbjct: 93 EMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGAL 152
Query: 295 LGEL-ALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKG 353
+ + P D + + + +K G
Sbjct: 153 AHRYGKTYIVDAMS----------------SFGGIPMDIAALHIDYLISSANKCIQGVPG 196
Query: 354 TSVVLYRNREIRKHQ-------FVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAALMSLGQ 406
+ V+ R +++ + +W + P + AL L +
Sbjct: 197 FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 256
Query: 407 EGYLENTKAIME 418
EG + +
Sbjct: 257 EGGVAARHQRYQ 268
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 28.4 bits (62), Expect = 1.7
Identities = 16/114 (14%), Positives = 26/114 (22%)
Query: 203 GTESILLAVKSSRDYMRNKRGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKEFRAD 262
G LL + + E I S
Sbjct: 97 GYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTH 156
Query: 263 VKAIKKYINRNTVLIVGSAPGFPHGIIDPIQELGELALSHGTCLHVDLCLGGFV 316
+ + ++V G P+ E+ ++ H L VD G V
Sbjct: 157 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV 210
>d2rsla_ c.53.1.1 (A:) gamma,delta resolvase, catalytic domain
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 26.5 bits (57), Expect = 3.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 144 HFSLINEACSMFAHTNPLHLDIFQSVARFEAEVI 177
I++ S + + I +VA+ E + I
Sbjct: 89 SIRFIDDGISTDGEMGKMVVTILSAVAQAERQRI 122
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
aerocolonigenes [TaxId: 68170]}
Length = 302
Score = 26.8 bits (59), Expect = 5.9
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 204 TESILLAVKSSRDYMRNKRG------ITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDK 257
+++ V D+M+ RG I RPE II + K A + VP
Sbjct: 205 GRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILGHQDNDPKVANDLGL---PVPRKG 261
Query: 258 EF-RADVKAIKKYINRNTVLIVGSA 281
+ A V + R T I G
Sbjct: 262 QVVAARVVPADEGDQRQTAEIQGRR 286
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase
TM1293 {Thermotoga maritima [TaxId: 2336]}
Length = 208
Score = 26.3 bits (56), Expect = 5.9
Identities = 13/131 (9%), Positives = 43/131 (32%), Gaps = 10/131 (7%)
Query: 239 YDKAAQYFNIKLWRVPVDKEFRADVKAIKKYINRNTVLIVGSAPGFPHG------IIDPI 292
+++ + + W + + ++++A+K + + +G G ++P
Sbjct: 6 FERFVNEY--ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIKIGVEPS 63
Query: 293 QELGELALSHGTCLHVDLCLGGFVLPFAKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPK 352
+ + E ++ + V + + + + ++ L
Sbjct: 64 ERMAE--IARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKG 121
Query: 353 GTSVVLYRNRE 363
G +V +RE
Sbjct: 122 GYLIVGIVDRE 132
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
[TaxId: 554]}
Length = 271
Score = 26.6 bits (58), Expect = 5.9
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 323 LGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVLYRNREIRKHQFVAVTEWSGGLYVS 382
G I DF +I + + G V+ +N +I F + G +
Sbjct: 14 FGAYIDHRDFLEAKTETIKNLLMRQG-------FVVVKNLDIDSDTFRDIYSAYGTIVEY 66
Query: 383 PTVAGSRPGGLI 394
G
Sbjct: 67 ADEKIGVGFGYR 78
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis
[TaxId: 632]}
Length = 126
Score = 26.0 bits (57), Expect = 6.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 320 AKKLGYPIPPFDFSVQGVTSISVDVHKYGLAPKGTSVVL 358
A LG PF QGV +++D H LAP G+ +VL
Sbjct: 8 AASLG--RKPFVADKQGVYRLTIDKHLVMLAPHGSELVL 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,601,135
Number of extensions: 75028
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 23
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)