BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013676
(438 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WN0|Y4920_ARATH Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis
thaliana GN=At4g37920 PE=1 SV=2
Length = 427
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/371 (73%), Positives = 315/371 (84%), Gaps = 7/371 (1%)
Query: 59 SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
+F T+T++ + TS +V V ED E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 49 TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 101
Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
KQW+ YLV R++WNKY +FY RCR RAD E++P +K+KL+SL KVKKID EME H +L
Sbjct: 102 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 161
Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 162 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 221
Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKAS 298
D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN A+A+AK S
Sbjct: 222 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINSAYAAAKES 281
Query: 299 QTMKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIIDPEERFSALATAFSPGSEHE 358
QT+ NE KDIMY LYKATKSSLR I PKEIKLLKYLLNI DPEERFSALATAFSPG +HE
Sbjct: 282 QTVTNEAKDIMYHLYKATKSSLRSITPKEIKLLKYLLNITDPEERFSALATAFSPGDDHE 341
Query: 359 SKNPKALYTTPKELHKWITIMLDAYHLNKEETDMREAKQMTQPVVIQRLLILKETIEEEY 418
+K+PKALYTTPKELHKWI IMLDAYHLNKEETD++EAKQM+QP+VIQRL ILK+TIE+EY
Sbjct: 342 AKDPKALYTTPKELHKWIKIMLDAYHLNKEETDIKEAKQMSQPIVIQRLFILKDTIEDEY 401
Query: 419 LGQATFQTMQT 429
L + T +T
Sbjct: 402 LDKKTIVADET 412
>sp|O51940|PVDA_BURCE L-ornithine 5-monooxygenase OS=Burkholderia cepacia GN=pvdA PE=3
SV=1
Length = 444
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 327 EIKLLKYLLNIIDPEERFSALATAFSPGSEHESKNPKALYTTPKELHKWITIMLDAY 383
+I LK L+ + DP+ R++ + F G +E N K Y T E H +++ + DA+
Sbjct: 59 QISFLKDLVTMRDPKSRYTFINYLFERGRLNEFVNLKNFYPTRVEFHDYLSWVADAF 115
>sp|Q2YXX0|SBCC_STAAB Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=sbcC PE=3 SV=2
Length = 1009
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
V D NKY++S+ N R R + E + ++L +L + ++K++D + ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LGDELNNLIKGLEKVEDSIGNNESDYEKIIEL 436
Query: 183 QDSPTDIN 190
++ T+IN
Sbjct: 437 NNAITNIN 444
>sp|Q6CM12|BRO1_KLULA Vacuolar protein-sorting protein BRO1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=BRO1 PE=3 SV=1
Length = 813
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 245 VETLDSAQAKFD----DILNSPSVDVACEK---IKSLAKAKELDSSLILLINGAWASAKA 297
+ L A A FD + LNSPS+D A E + +L A+ + L+ LING AS +A
Sbjct: 144 IPYLSKAMACFDYMSNNFLNSPSIDCAAENTSFLSTLLHAEAQEMFLMTLINGPDASKRA 203
Query: 298 S 298
S
Sbjct: 204 S 204
>sp|Q6GH60|SBCC_STAAR Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain MRSA252)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
V D NKY++S+ N R R + E + ++L +L ++K++D + ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LADELNNLIEGLEKVEDSIGNNESDYEKIIEL 436
Query: 183 QDSPTDIN 190
++ T+IN
Sbjct: 437 NNAITNIN 444
>sp|P13542|MYH8_MOUSE Myosin-8 OS=Mus musculus GN=Myh8 PE=1 SV=2
Length = 1937
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 143 RTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTG 202
R +A EE + K SL + +++ +E+E +L+ +++ + A + +++++F
Sbjct: 1399 RLQAAEEHVEAVNAKCASLEKTKQRLQNEVE---DLMIDVERTNAAC-AALDKKQRNFDK 1454
Query: 203 EFFRYLSLVSETHDSLEDCDAVAR-LATRCLSAVSAYDKTLEHVETL 248
+ ET LE C +R L+T +AY+++L+H+ETL
Sbjct: 1455 VLSEWRQKYEETQAELESCQKESRTLSTELFKVKNAYEESLDHLETL 1501
>sp|G5EGQ6|TEN1_CAEEL Teneurin-1 OS=Caenorhabditis elegans GN=ten-1 PE=1 SV=1
Length = 2684
Score = 32.3 bits (72), Expect = 6.8, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 162 ARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSET------- 214
+R + D E + Y + Q S T ++ + R +F+ + +S++SE
Sbjct: 1521 SRTYEVTDAERQEKYTFNRHGQHSST-VSLITGRTFFNFSYQVDSPISMISEIRAASGVV 1579
Query: 215 ------HDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAK 254
+DSL D + L R +SAYD TLE V DSA ++
Sbjct: 1580 LRVLKRNDSLFDLETT--LGQRTTLTMSAYDGTLEQVSKRDSATSR 1623
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,963,112
Number of Sequences: 539616
Number of extensions: 5645351
Number of successful extensions: 21165
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 21053
Number of HSP's gapped (non-prelim): 245
length of query: 438
length of database: 191,569,459
effective HSP length: 120
effective length of query: 318
effective length of database: 126,815,539
effective search space: 40327341402
effective search space used: 40327341402
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)