Query 013676
Match_columns 438
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etr_A Putative uncharacterize 57.7 30 0.001 29.4 7.2 127 220-350 12-151 (153)
2 3u1f_A Methionyl-tRNA syntheta 43.7 2E+02 0.0069 28.5 11.5 147 165-339 338-501 (542)
3 4etr_A Putative uncharacterize 38.0 1.8E+02 0.0063 24.5 9.6 49 134-188 25-73 (153)
4 2l81_A Enhancer of filamentati 36.8 81 0.0028 29.1 6.9 78 120-197 47-149 (176)
5 1lva_A Selenocysteine-specific 36.1 1.3E+02 0.0045 27.5 8.3 166 221-400 61-227 (258)
6 3bzc_A TEX; helix-turn-helix, 33.3 1.1E+02 0.0037 33.4 8.3 85 273-380 80-170 (785)
7 2d1l_A Metastasis suppressor p 32.4 2E+02 0.0067 27.4 9.0 24 118-141 115-143 (253)
8 1s0p_A CAP, adenylyl cyclase-a 30.8 32 0.0011 31.3 3.1 55 156-215 42-96 (176)
9 1w6t_A Enolase; bacterial infe 29.4 93 0.0032 30.9 6.5 49 336-384 221-296 (444)
10 1vyk_A Oxygen-evolving enhance 26.1 99 0.0034 27.5 5.4 51 207-259 88-138 (149)
11 1f6f_A Placental lactogen; 4-h 23.6 87 0.003 28.5 4.7 76 342-417 38-135 (199)
12 1i84_S Smooth muscle myosin he 21.6 1.1E+02 0.0037 34.1 5.8 15 120-135 801-815 (1184)
13 3tqp_A Enolase; energy metabol 20.4 86 0.003 31.5 4.4 49 337-385 214-281 (428)
14 1qoy_A Hemolysin E; toxin, mem 20.1 5.9E+02 0.02 25.4 10.0 139 179-322 25-176 (318)
No 1
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=57.66 E-value=30 Score=29.42 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHhhHHHHHHhhhhhhCCc--chHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhc
Q 013676 220 DCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGAWASAKA 297 (438)
Q Consensus 220 ~rd~la~L~~~cLsav~ayD~a~e~~e~LdaA~~kf~DILnSp--SLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKE 297 (438)
--+.|-.|=..|..++++|..+.+..+.- .-...|..+.+.- ..++.-..|..|-..=.-.+++.-.+.++|...|-
T Consensus 12 ~i~~Ln~Li~~~~D~~~gY~~aae~~~d~-~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~lks 90 (153)
T 4etr_A 12 TLDVLNDLLQTSKDGEAGFHACAEDLRDP-QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKS 90 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34567777888999999999999887532 3345566665543 24444444554444445678888999999998874
Q ss_pred cchhh------HH---HHHHHHHHHHHHHhhhhccCCchhH--HHHHHhccCChHHHHHHHHhc
Q 013676 298 SQTMK------NE---VKDIMYCLYKATKSSLRGIAPKEIK--LLKYLLNIIDPEERFSALATA 350 (438)
Q Consensus 298 S~~mk------dE---vKDIMyhLY~tak~~l~r~~PKEiR--ILKyLLsIeDPeER~~aL~~A 350 (438)
.-... ++ .-|....-|..+-. .-.|+++| |-+.+-.|..=.+++..|.+|
T Consensus 91 ~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~---~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~~ 151 (153)
T 4etr_A 91 LVTGKDEEAVLNECERGEDVAKHRYQAALE---KSLPAEIHQVIERQYQGVLRHHDRVRALRDA 151 (153)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 43222 22 34555566666655 34788875 335556666666677776654
No 2
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=43.65 E-value=2e+02 Score=28.52 Aligned_cols=147 Identities=11% Similarity=0.171 Sum_probs=77.9
Q ss_pred hhhccHHHHHHHHHHHHHhcCCcch--hHHHhhhccCCchhhHHHHHHHhhhc---C---------ChhhhHHHHHHHHH
Q 013676 165 VKKIDDEMESHYELLKEIQDSPTDI--NAVVARRRKDFTGEFFRYLSLVSETH---D---------SLEDCDAVARLATR 230 (438)
Q Consensus 165 LK~iDeev~~HneLL~~i~~~p~di--~aIVArrRkDFT~EFF~hL~~l~ea~---d---------~~~~rd~la~L~~~ 230 (438)
+++..-|.=|+.-+-..-...+.++ +.++.+.+.+|-.-+.+.++.+.... + .+.++.-+.++.
T Consensus 338 i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~-- 415 (542)
T 3u1f_A 338 AEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIK-- 415 (542)
T ss_dssp HHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHH--
T ss_pred HhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhh--
Confidence 4445566666654332223444553 78888889998887776666555332 1 122333333333
Q ss_pred HHHHHHhhhhhhhhHhhHHHHHHhhhhhhCCcchHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHHHH
Q 013676 231 CLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMY 310 (438)
Q Consensus 231 cLsav~ayD~a~e~~e~LdaA~~kf~DILnSpSLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDIMy 310 (438)
.+++.++.+.++.+ ...|.+.|-+|+... .--+-..|-|.-+|+. +++...++|
T Consensus 416 --~~~~~~~~~~~~~~-----------------~~~a~~~i~~~~~~~----n~Y~~~~~pw~l~k~d---~~~~~~~l~ 469 (542)
T 3u1f_A 416 --DLPGTADHYYLIPD-----------------IQKAIIAVFDVLRAI----NAYVTDMAPWKLVKTD---PERLRTVLY 469 (542)
T ss_dssp --HHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHHH----HHHHHHHCHHHHHHHC---HHHHHHHHH
T ss_pred --hhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH----HHHHHhcCchhhhcCC---HHHHHHHHH
Confidence 23333333333333 333444444443210 1123345567777754 467888999
Q ss_pred HHHHHHHhh---hhccCCchhHHHHHHhccCC
Q 013676 311 CLYKATKSS---LRGIAPKEIKLLKYLLNIID 339 (438)
Q Consensus 311 hLY~tak~~---l~r~~PKEiRILKyLLsIeD 339 (438)
.++...+.- |+=++|-=-.=|-..|++..
T Consensus 470 ~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~ 501 (542)
T 3u1f_A 470 ITLEGVRVTTLLLSPILPRKSVVIFDMLGVPE 501 (542)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCC
Confidence 988876654 34556655554555677753
No 3
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=38.01 E-value=1.8e+02 Score=24.53 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=27.3
Q ss_pred hhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhcCCcc
Q 013676 134 YRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTD 188 (438)
Q Consensus 134 iRp~Ff~Rcq~RAd~E~DP~~K~kL~kL~RkLK~iDeev~~HneLL~~i~~~p~d 188 (438)
-.-.+|+++-+.+ .||..|.-|...+..-+..=.+++ ..+..+.+.|.+
T Consensus 25 D~~~gY~~aae~~---~d~~lk~~f~~~a~~~~~~~~eL~---~~i~~lGg~p~~ 73 (153)
T 4etr_A 25 DGEAGFHACAEDL---RDPQLKAAMLEQSRDCAAAADELE---RIVLELGGKPKD 73 (153)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTCCC--
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCCCC
Confidence 3556788876665 689888887666655443333332 233344555554
No 4
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=36.82 E-value=81 Score=29.05 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=57.2
Q ss_pred cchhhhcchhhhhhhhHh----------HHHH---HHhhhhhccChHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh---
Q 013676 120 QWRKYLVFREDWNKYRES----------FYNR---CRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQ--- 183 (438)
Q Consensus 120 DWrkLLaFS~EW~~iRp~----------Ff~R---cq~RAd~E~DP~~K~kL~kL~RkLK~iDeev~~HneLL~~i~--- 183 (438)
+||.+=.-...|+.||.. |... .-.-|..-.|+..-.||.++..+|.....-+.+|.+-|....
T Consensus 47 ~WR~~~~le~~i~~I~~a~~~v~~Sl~efL~FArga~~nA~~~~d~~L~~kl~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl 126 (176)
T 2l81_A 47 DWRCYGYMERHINEIRTAVDKVELFLKEYLHFVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDLNECSWSL 126 (176)
T ss_dssp CTTCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcH
Confidence 899976668889998873 3333 333445567888899999999999999999999988887663
Q ss_pred ---------cCCcchhHHHhhhc
Q 013676 184 ---------DSPTDINAVVARRR 197 (438)
Q Consensus 184 ---------~~p~di~aIVArrR 197 (438)
..|.|++.+|+--|
T Consensus 127 ~~La~~~~~~~~DdLDrfVmvaR 149 (176)
T 2l81_A 127 NILAINKPQNKCDDLDRFVMVAK 149 (176)
T ss_dssp HHHTTCCSSCTTCHHHHHHHHHT
T ss_pred HHHccCCCCCCcchHHHHHHhhc
Confidence 34566666665444
No 5
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=36.13 E-value=1.3e+02 Score=27.48 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHhhHHHHHHhhhhhhCCcchHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhc-cc
Q 013676 221 CDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKA-SQ 299 (438)
Q Consensus 221 rd~la~L~~~cLsav~ayD~a~e~~e~LdaA~~kf~DILnSpSLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKE-S~ 299 (438)
.+....+..+|+.+++.|-..--...-+..+++.=. +....+-.....=|+.|.+.|.|-. ...|-+-++ +.
T Consensus 61 ~~~~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~-~~~~~~~~l~~~ll~~l~~~g~l~~------~~~~v~l~~h~~ 133 (258)
T 1lva_A 61 TERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSR-YFSRLPARVYQALLEEWSREGRLQL------AANTVALAGFTP 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHH-HCTTSCHHHHHHHHHHHHHTTSEEE------ETTEEEETTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHh-ccccCCHHHHHHHHHHHHHCCCEEe------cCCEEeCCCCcc
Confidence 456667778888888888665555433333322100 0000122333344567777776422 122333333 12
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHhccCChHHHHHHHHhccCCCCccccCCCCccccChHHHHHHHHHH
Q 013676 300 TMKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIIDPEERFSALATAFSPGSEHESKNPKALYTTPKELHKWITIM 379 (438)
Q Consensus 300 ~mkdEvKDIMyhLY~tak~~l~r~~PKEiRILKyLLsIeDPeER~~aL~~AFtPG~ElE~~d~D~LYTTP~~L~~wI~~~ 379 (438)
.-.++...+.-.|+...+. +...|+.++=|---+++ |+.+-...|..+.-=|.-.... +-+|.+++.+.+-++.+
T Consensus 134 ~~~~~~~~~~~~i~~~~~~--~g~~pp~~~dl~~~l~~-~~~~~~~~l~~l~~~g~lv~l~--~~~~~~~~~~~~~~~~l 208 (258)
T 1lva_A 134 SFSETQKKLLKDLEDKYRV--SRWQPPSFKEVAGSFNL-DPSELEELLHYLVREGVLVKIN--DEFYWHRQALGEAREVI 208 (258)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HTTSCCBHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEESS--SSBEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--CCCCCCCHHHHHhHhCC-CHHHHHHHHHHHHHCCCEEEec--CCeEEcHHHHHHHHHHH
Confidence 2334555566666665533 56778888866666666 5666667777777777666543 45888899888887777
Q ss_pred HHHhhhcccccchHHHhhhcC
Q 013676 380 LDAYHLNKEETDMREAKQMTQ 400 (438)
Q Consensus 380 LdAY~~~ke~t~i~eA~~lm~ 400 (438)
.+ |. ..+.-.+.|+|++++
T Consensus 209 ~~-~~-~~~~it~a~~Rd~lg 227 (258)
T 1lva_A 209 KN-LA-STGPFGLAEARDALG 227 (258)
T ss_dssp HH-HH-TTSCBCHHHHHHHHT
T ss_pred HH-HH-hcCCcCHHHHHHHhC
Confidence 55 44 668888899999876
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=33.27 E-value=1.1e+02 Score=33.44 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=44.8
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH---HHhhhhc---cCCchhHHHHHHhccCChHHHHHH
Q 013676 273 SLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKA---TKSSLRG---IAPKEIKLLKYLLNIIDPEERFSA 346 (438)
Q Consensus 273 ~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDIMyhLY~t---ak~~l~r---~~PKEiRILKyLLsIeDPeER~~a 346 (438)
.+.+.|+|++.|.-.|.. ..+++|+.||-. =|+. +|.++.| +.| +-+.||+ ||..--..
T Consensus 80 ~i~~qg~lt~~l~~~i~~--------a~t~~eleDly~-pyk~krrtka~~a~e~GLep----lA~~l~~--~~~~~p~~ 144 (785)
T 3bzc_A 80 SIEEQGKLTPELARDIKL--------ADTKTRLEDLYL-PYKQKRRTKGQIALEAGLGA----LADALFD--DPTLVPES 144 (785)
T ss_dssp HHHHTTCCCHHHHHHHHH--------CCSHHHHHHHHG-GGSCCCCCHHHHHHHTTTHH----HHHHHHH--CTTSCHHH
T ss_pred HHHHccCCCHHHHHHHHh--------cCcHHHHHHHHh-ccCCCCCCHHHHHHHcCCHH----HHHHHHc--CCCCCHHH
Confidence 445569999988766554 457899999533 2321 2222222 223 3344554 55444455
Q ss_pred HHhccCCCCccccCCCCccccChHHHHHHHHHHH
Q 013676 347 LATAFSPGSEHESKNPKALYTTPKELHKWITIML 380 (438)
Q Consensus 347 L~~AFtPG~ElE~~d~D~LYTTP~~L~~wI~~~L 380 (438)
++..|.=. + -=+.|+++.+.-...|+
T Consensus 145 ~A~~~v~~-~-------~~~~~~~~al~ga~~il 170 (785)
T 3bzc_A 145 EAARFVDA-E-------KGFADVKAVLEGAKYIL 170 (785)
T ss_dssp HHHTTCCS-S-------SSCCSHHHHHHHHHHHH
T ss_pred HHHHHhCc-c-------cCCCCHHHHHHHHHHHH
Confidence 56666421 1 12666666665554444
No 7
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=32.38 E-value=2e+02 Score=27.42 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=17.4
Q ss_pred cccchhhhc-----chhhhhhhhHhHHHH
Q 013676 118 VKQWRKYLV-----FREDWNKYRESFYNR 141 (438)
Q Consensus 118 ~~DWrkLLa-----FS~EW~~iRp~Ff~R 141 (438)
.+.|.|++. |.+++.++|...-++
T Consensus 115 ~e~d~k~~~~~~K~~~~~~k~~r~elkk~ 143 (253)
T 2d1l_A 115 MEEWKKVANQLDKDHAKEYKKARQEIKKK 143 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 689999998 556777777665443
No 8
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=30.77 E-value=32 Score=31.33 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc
Q 013676 156 EKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (438)
Q Consensus 156 ~kL~kL~RkLK~iDeev~~HneLL~~i~~~p~di~aIVArrRkDFT~EFF~hL~~l~ea~ 215 (438)
.+++.++-+-|+=|..- -..||+-|.+.=..+.++=.+ ....+||.||.-++|+.
T Consensus 42 r~~L~~as~~kKP~~~~--~~~lL~pl~~~i~~i~~~re~---nR~s~~fNHLsavsEgi 96 (176)
T 1s0p_A 42 KALINTASQSKKPSQET--LLELIKPLNNFAAEVGKIRDS---NRSSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHEECCCHHH--HHHHTHHHHHHHHHHHHHHHT---CTTCTTHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCCchh--HHHHHHHHHHHHHHHHHHHHc---cCCCchhhHHHHHHHhh
Confidence 35666666666666322 334666555544444444444 44568999999999985
No 9
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=29.40 E-value=93 Score=30.89 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=35.8
Q ss_pred ccCChHHHHHHHHhcc-----CCCCccc-cCCC---------Cccc------------cChHHHHHHHHHHHHHhh
Q 013676 336 NIIDPEERFSALATAF-----SPGSEHE-SKNP---------KALY------------TTPKELHKWITIMLDAYH 384 (438)
Q Consensus 336 sIeDPeER~~aL~~AF-----tPG~ElE-~~d~---------D~LY------------TTP~~L~~wI~~~LdAY~ 384 (438)
++++..+|+.++.+|+ +||++.. .=|. +.-| -||++...+++.+.+.|.
T Consensus 221 ~~~~d~~~l~avreav~~agy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~ 296 (444)
T 1w6t_A 221 RFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYP 296 (444)
T ss_dssp CCSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSC
T ss_pred chHhHHHHHHHHHHHHHHhccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCC
Confidence 5667789999999998 8998754 2233 3333 268888899988887664
No 10
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=26.11 E-value=99 Score=27.48 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHhhHHHHHHhhhhhh
Q 013676 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (438)
Q Consensus 207 hL~~l~ea~d~~~~rd~la~L~~~cLsav~ayD~a~e~~e~LdaA~~kf~DIL 259 (438)
-|+.++.+. .+++|.++.+|++..+..++.-|.|..... ...|+..|.+..
T Consensus 88 Dl~~li~sl-p~~~kk~l~~La~~Lf~~le~LD~AAr~kd-~~~a~~~Y~~t~ 138 (149)
T 1vyk_A 88 DLKTVISAK-PKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 138 (149)
T ss_dssp HHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 355556565 478889999999999999999999887776 555666665544
No 11
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=23.65 E-value=87 Score=28.54 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHHHHhccCCCCccccCCCC--------------ccccChHHHHHHHHHHHHHh-----hhcccccchHHHhhhcCh-
Q 013676 342 ERFSALATAFSPGSEHESKNPK--------------ALYTTPKELHKWITIMLDAY-----HLNKEETDMREAKQMTQP- 401 (438)
Q Consensus 342 ER~~aL~~AFtPG~ElE~~d~D--------------~LYTTP~~L~~wI~~~LdAY-----~~~ke~t~i~eA~~lm~P- 401 (438)
+=++.++..|.||+..-.+... +.=+++++|++|+-.+|.++ |+..+=.++.+|-+.+-+
T Consensus 38 ~~~~eFe~~~~~~~~~~~~~~~ChT~si~tP~~keeaqq~s~~~LL~~~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilsk 117 (199)
T 1f6f_A 38 EMVNRFDEQYGQGINSESKVINCHTSSITTPNSKAEAINTEDKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTK 117 (199)
T ss_dssp HHHHHHHTTC---------CCCCGGGGSCCCCSHHHHHHSCHHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHcCcccccccCCCCCccCCcCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcchhcch
Confidence 3455556667777775544444 22244689999999999884 666665555555443222
Q ss_pred --HHHHHHHHHHHHHHHH
Q 013676 402 --VVIQRLLILKETIEEE 417 (438)
Q Consensus 402 --~vI~Rl~~LK~~Ie~~ 417 (438)
+|-++++.|++-|+.-
T Consensus 118 a~~I~ek~~~L~egi~~i 135 (199)
T 1f6f_A 118 AQEIKEKAKVLVDGVEVI 135 (199)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3566777777765554
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.60 E-value=1.1e+02 Score=34.15 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=8.6
Q ss_pred cchhhhcchhhhhhhh
Q 013676 120 QWRKYLVFREDWNKYR 135 (438)
Q Consensus 120 DWrkLLaFS~EW~~iR 135 (438)
-||++++ ++.|.++|
T Consensus 801 ~~Rg~l~-R~~~~k~~ 815 (1184)
T 1i84_S 801 QCRGYLA-RKAFAKRQ 815 (1184)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 3666666 55555543
No 13
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=20.40 E-value=86 Score=31.48 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=34.9
Q ss_pred cCChHHH----HHHHHhc-cCCCCccc-cCCC-------Ccc------ccChHHHHHHHHHHHHHhhh
Q 013676 337 IIDPEER----FSALATA-FSPGSEHE-SKNP-------KAL------YTTPKELHKWITIMLDAYHL 385 (438)
Q Consensus 337 IeDPeER----~~aL~~A-FtPG~ElE-~~d~-------D~L------YTTP~~L~~wI~~~LdAY~~ 385 (438)
+.+++++ ..|+++| |+||++.. .=|. +.- .-||+++..+++.+++.|..
T Consensus 214 ~~~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i 281 (428)
T 3tqp_A 214 LPNNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV 281 (428)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE
T ss_pred cccHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhccc
Confidence 4456676 6899999 99999866 2333 111 23789999999998888863
No 14
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=20.06 E-value=5.9e+02 Score=25.45 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=98.0
Q ss_pred HHHHhcCCcchhHHHhhhccCCchh-hHHHHHHHhhhcCC------hhhhHHHHHHHHHHHHHHHhhhhhhhhH-hhHHH
Q 013676 179 LKEIQDSPTDINAVVARRRKDFTGE-FFRYLSLVSETHDS------LEDCDAVARLATRCLSAVSAYDKTLEHV-ETLDS 250 (438)
Q Consensus 179 L~~i~~~p~di~aIVArrRkDFT~E-FF~hL~~l~ea~d~------~~~rd~la~L~~~cLsav~ayD~a~e~~-e~Lda 250 (438)
++.++..=.-++.||.++|++|+.. =|.-|+-.+++.|. ...++.|-++.+.+-.|-..|-+....+ |--=+
T Consensus 25 ~e~vk~al~Sls~iv~kY~~elD~kvkf~~LQ~aId~ID~~MlgY~G~AK~~LD~lRslns~A~ltY~~cv~~VfEWCvs 104 (318)
T 1qoy_A 25 VEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGV 104 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHSCHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCCcHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555455789999999999764 47777777777654 5667888999999999999998887776 55556
Q ss_pred HHHhhhhhh---CC--cchHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhhc
Q 013676 251 AQAKFDDIL---NS--PSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKATKSSLRG 322 (438)
Q Consensus 251 A~~kf~DIL---nS--pSLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDIMyhLY~tak~~l~r 322 (438)
+...|+=+| ++ +.+-.+++-| |=+ =++.+|-- +.||=.+-...+...+++...+-.+......-|+.
T Consensus 105 insTl~~~ip~i~~~~~~lS~~dkdi--lW~--iia~al~~-L~Ka~~SLe~L~~v~~~~~~Lf~~ml~dv~~DFg~ 176 (318)
T 1qoy_A 105 ATQLLAAYILLFDEYNEKKASAQKDI--LIK--VLDDGITK-LNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSE 176 (318)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHH--HHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhccccccCCHHHHHH--HHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 666666666 55 4444444332 111 16677777 88999998889999999988866677766666653
Done!