Query 013676
Match_columns 438
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 42.3 8.2 0.0006 33.0 3.4 56 155-215 41-96 (176)
2 d1zj8a4 d.134.1.1 (A:162-326) 31.9 23 0.0017 28.9 4.5 55 365-422 98-154 (165)
3 d1hcia4 a.7.1.1 (A:633-746) al 30.7 51 0.0037 24.0 6.0 57 133-189 5-70 (114)
4 d2d5ba1 a.27.1.1 (A:349-500) M 30.2 1.1E+02 0.0082 23.5 9.6 80 253-339 41-123 (152)
5 d3bzka3 a.294.1.1 (A:1-324) Tr 30.0 22 0.0016 31.9 4.4 30 271-308 78-107 (324)
6 d1rqga1 a.27.1.1 (A:397-606) M 28.7 1.4E+02 0.01 24.0 10.5 84 250-340 42-128 (210)
7 d1mmsa1 a.4.7.1 (A:71-140) Rib 27.2 24 0.0017 26.1 3.4 28 247-275 35-62 (70)
8 d1h3ob_ a.22.1.3 (B:) TAF(II)- 26.3 16 0.0012 27.5 2.2 54 258-314 3-68 (74)
9 d1hc8a_ a.4.7.1 (A:) Ribosomal 26.0 34 0.0025 25.5 4.1 29 247-276 39-67 (74)
10 d2f8la1 c.66.1.45 (A:2-329) Hy 24.7 1.9E+02 0.014 24.3 10.7 70 246-315 10-84 (328)
11 d1af7a1 a.58.1.1 (A:11-91) Che 21.7 30 0.0022 24.6 3.0 62 128-194 14-77 (81)
12 d2at2a1 c.78.1.1 (A:1-144) Asp 20.6 10 0.00076 30.5 0.1 62 331-393 1-69 (144)
13 d1nzea_ a.24.18.1 (A:) Oxygen- 20.3 81 0.0059 24.4 5.5 49 209-259 53-101 (112)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=42.30 E-value=8.2 Score=33.05 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc
Q 013676 155 KEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (438)
Q Consensus 155 K~kL~kL~RkLK~iDeev~~HneLL~~i~~~p~di~aIVArrRkDFT~EFF~hL~~l~ea~ 215 (438)
...++.++-+-|+=|+ ....+||.-+.+.=..|+++=.++| +..||.||..++|+.
T Consensus 41 qr~~L~~a~~~kKP~~--~~~~~ll~pl~~~i~~i~~~re~nR---~s~~fNHLsavsEgi 96 (176)
T d1s0pa_ 41 EKALINTASQSKKPSQ--ETLLELIKPLNNFAAEVGKIRDSNR---SSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHHEECCCH--HHHHHHTHHHHHHHHHHHHHHHTCT---TCTTHHHHHHHHTSG
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHhcC---CCchhHHHHHHHHhc
Confidence 3456667777777764 3455666666555444555555555 558999999999985
No 2
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.92 E-value=23 Score=28.91 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=40.5
Q ss_pred cccChHHHHHHHHHHHHHhhhcccccchHHHhhhcChHHHHHH--HHHHHHHHHHHhccc
Q 013676 365 LYTTPKELHKWITIMLDAYHLNKEETDMREAKQMTQPVVIQRL--LILKETIEEEYLGQA 422 (438)
Q Consensus 365 LYTTP~~L~~wI~~~LdAY~~~ke~t~i~eA~~lm~P~vI~Rl--~~LK~~Ie~~ym~~~ 422 (438)
.+.+|+++...++.|++.|....+-.+-.-||= =-+|+|+ +.+|+.++++|.++.
T Consensus 98 ~~v~~e~v~~~v~ai~~~y~~~g~r~~r~~aRl---k~li~~~G~e~f~~~v~~~~~~~~ 154 (165)
T d1zj8a4 98 AWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARL---KFLIKDWGIAKFREVLETEYLKRP 154 (165)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHSCCSSGGGCSH---HHHHHHHCHHHHHHHHHHHTTSSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCccchhhhHHH---HHHHHHcCHHHHHHHHHHHHcccc
Confidence 478999999999999999987665444332221 1246665 889999999998753
No 3
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.68 E-value=51 Score=24.00 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=38.2
Q ss_pred hhhHhHHHHHHhhh---------hhccChHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhcCCcch
Q 013676 133 KYRESFYNRCRTRA---------DEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDI 189 (438)
Q Consensus 133 ~iRp~Ff~Rcq~RA---------d~E~DP~~K~kL~kL~RkLK~iDeev~~HneLL~~i~~~p~di 189 (438)
.+|..|+..|.+.- -+..++..-..+-.+.++.+.+..+|..|..-+..|.+...++
T Consensus 5 ~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L 70 (114)
T d1hcia4 5 RLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLI 70 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766531 1223333344566788888888899999888888887766554
No 4
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=30.19 E-value=1.1e+02 Score=23.48 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=50.9
Q ss_pred HhhhhhhCCcchHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHH---hhhhccCCchhH
Q 013676 253 AKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKATK---SSLRGIAPKEIK 329 (438)
Q Consensus 253 ~kf~DILnSpSLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDIMyhLY~tak---~~l~r~~PKEiR 329 (438)
.++.+.++.=.+..|++.|-+++..+ +. .+--.+-|.-+|+. .++++.|+|.+....| --|.=.+|.=-.
T Consensus 41 ~~~~~~~e~~~~~~al~~i~~~~~~~--N~--yi~~~~PW~l~k~d---~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ 113 (152)
T d2d5ba1 41 GRLRPLVRELKFHVALEEAMAYVKAL--NR--YINEKKPWELFKKE---PEEARAVLYRVVEGLRIASILLTPAMPDKMA 113 (152)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HH--HHHHHCHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH--HH--HHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 33344444445777777777776543 11 23445559888874 3688888886655544 477888887766
Q ss_pred HHHHHhccCC
Q 013676 330 LLKYLLNIID 339 (438)
Q Consensus 330 ILKyLLsIeD 339 (438)
-+--.|++.+
T Consensus 114 ki~~~Lg~~~ 123 (152)
T d2d5ba1 114 ELRRALGLKE 123 (152)
T ss_dssp HHHHHTTCCS
T ss_pred HHHHHcCCCc
Confidence 6667778764
No 5
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.01 E-value=22 Score=31.94 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHH
Q 013676 271 IKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDI 308 (438)
Q Consensus 271 Id~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDI 308 (438)
|+.+.+.|+|++.|---|.+|. +.+|+.||
T Consensus 78 l~~i~~~~~Lt~~L~~~i~~a~--------t~~eLEdl 107 (324)
T d3bzka3 78 LASIEEQGKLTPELARDIKLAD--------TKTRLEDL 107 (324)
T ss_dssp HHHHHHTTCCCHHHHHHHHHCC--------SHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHcCC--------CHHHHHHH
Confidence 4567789999999988777654 47899998
No 6
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=28.66 E-value=1.4e+02 Score=23.99 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred HHHHhhhhhhCCcchHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHh---hhhccCCc
Q 013676 250 SAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKATKS---SLRGIAPK 326 (438)
Q Consensus 250 aA~~kf~DILnSpSLd~Ac~KId~LAk~~eLDsaLvLlisKAwaAAKES~~mkdEvKDIMyhLY~tak~---~l~r~~PK 326 (438)
.+-.++.+.++.=.+..|++.|-+|+..+ --.+--++-|.-+|+. ++++..|+|.++...+. -|.=.+|.
T Consensus 42 ~~~~~~~~~~e~~~~~~al~~i~~l~~~~----N~yi~~~~PW~l~k~~---~~~~~~vl~~~~~~~~~l~ilL~PfmP~ 114 (210)
T d1rqga1 42 KAFKEVGELIMNYRFKDALKRVMSLASFG----NRYFDHKQPWKTAKED---KVRTGTTVNISLQIVKALGILLEPFLPD 114 (210)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHTTCHHHHTTTC---HHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444444445888888888887752 1223345568888875 57888999888887775 55777787
Q ss_pred hhHHHHHHhccCCh
Q 013676 327 EIKLLKYLLNIIDP 340 (438)
Q Consensus 327 EiRILKyLLsIeDP 340 (438)
=-.-|-..|++++.
T Consensus 115 ~a~~i~~~Lg~~~~ 128 (210)
T d1rqga1 115 ASEKIWHLLNLDEV 128 (210)
T ss_dssp HHHHHHHHTTCCSC
T ss_pred HHHHHHHHcCCCcc
Confidence 77777777788653
No 7
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.18 E-value=24 Score=26.08 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.8
Q ss_pred hHHHHHHhhhhhhCCcchHHHHHHHHHHH
Q 013676 247 TLDSAQAKFDDILNSPSVDVACEKIKSLA 275 (438)
Q Consensus 247 ~LdaA~~kf~DILnSpSLd~Ac~KId~LA 275 (438)
..+-|+.|..| ||.-++++||+-|-.=|
T Consensus 35 v~eIAk~K~~d-l~~~~l~~a~k~v~GtA 62 (70)
T d1mmsa1 35 IEEIAKTKMPD-LNANSLEAAMKIIEGTA 62 (70)
T ss_dssp HHHHHHHHGGG-CCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cCCCCHHHHHHHHHHhH
Confidence 45679999999 78888999999886544
No 8
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.30 E-value=16 Score=27.49 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=37.7
Q ss_pred hhCCcchHHHHHHHHHHHHhccCChHH---HH---------HHHHHHHhhhccchhhHHHHHHHHHHHH
Q 013676 258 ILNSPSVDVACEKIKSLAKAKELDSSL---IL---------LINGAWASAKASQTMKNEVKDIMYCLYK 314 (438)
Q Consensus 258 ILnSpSLd~Ac~KId~LAk~~eLDsaL---vL---------lisKAwaAAKES~~mkdEvKDIMyhLY~ 314 (438)
||+-..|++..++|| ...+|||.. +| ..+.|-..||--..-+=|+|||.+||=+
T Consensus 3 il~K~~L~eLv~~id---p~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~LeR 68 (74)
T d1h3ob_ 3 VLTKKKLQDLVREVD---PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 68 (74)
T ss_dssp SSCHHHHHHHHHHHC---SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Confidence 455556666666665 455677642 22 3456778888888877799999999854
No 9
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.01 E-value=34 Score=25.50 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.8
Q ss_pred hHHHHHHhhhhhhCCcchHHHHHHHHHHHH
Q 013676 247 TLDSAQAKFDDILNSPSVDVACEKIKSLAK 276 (438)
Q Consensus 247 ~LdaA~~kf~DILnSpSLd~Ac~KId~LAk 276 (438)
..+-|+.|..| ||..++++||+-|-.=|.
T Consensus 39 i~eIAk~K~~D-l~~~~l~~a~k~v~GtAr 67 (74)
T d1hc8a_ 39 VREIAELKMPD-LNAASIEAAMRMIEGTAR 67 (74)
T ss_dssp HHHHHHHSGGG-CCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cCCCCHHHHHHHHHhhHh
Confidence 45679999999 788899999998865554
No 10
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}
Probab=24.68 E-value=1.9e+02 Score=24.29 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=46.9
Q ss_pred hhHHHHHHhhhhhhCCcchHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH
Q 013676 246 ETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKE-----LDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKA 315 (438)
Q Consensus 246 e~LdaA~~kf~DILnSpSLd~Ac~KId~LAk~~e-----LDsaLvLlisKAwaAAKES~~mkdEvKDIMyhLY~t 315 (438)
..|+.+...+++=|+.+-+++-...++++..... +......-+.+.|...+-..+.++++.++.-+++..
T Consensus 10 ~~l~e~~~~l~~~l~~~~~eal~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~e~~~~~ 84 (328)
T d2f8la1 10 QVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQKEELSSEKQLKLQASYESIELENFSNEEIRKGLQLALLK 84 (328)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTSCTTCCC----CHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHH
Confidence 4577777777777888888888888887766543 333344455667777777778888777776655543
No 11
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=21.73 E-value=30 Score=24.62 Aligned_cols=62 Identities=11% Similarity=0.281 Sum_probs=39.7
Q ss_pred hhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhcCCc--chhHHHh
Q 013676 128 REDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPT--DINAVVA 194 (438)
Q Consensus 128 S~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~kL~RkLK~iDeev~~HneLL~~i~~~p~--di~aIVA 194 (438)
.+++..++.-++++|--.-+..-..-.+.+|.+..+.+. + +.+..|.++| +.+|. .++.+|.
T Consensus 14 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~~RL~~rm~~~g-~-~s~~~Y~~~L---~~~~~~~e~~~li~ 77 (81)
T d1af7a1 14 DAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALG-L-DDFGRYLSML---EANQNSAEWQAFIN 77 (81)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHT-C-CCHHHHHHHH---HHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHH---HhCCCHHHHHHHHH
Confidence 467889999999998888777777777777666666664 1 2344444444 44543 3455543
No 12
>d2at2a1 c.78.1.1 (A:1-144) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=20.58 E-value=10 Score=30.47 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=46.5
Q ss_pred HHHHhccCC--hHHHHHHHHhccC-----CCCccccCCCCccccChHHHHHHHHHHHHHhhhcccccchH
Q 013676 331 LKYLLNIID--PEERFSALATAFS-----PGSEHESKNPKALYTTPKELHKWITIMLDAYHLNKEETDMR 393 (438)
Q Consensus 331 LKyLLsIeD--PeER~~aL~~AFt-----PG~ElE~~d~D~LYTTP~~L~~wI~~~LdAY~~~ke~t~i~ 393 (438)
+||||+|.| ++|-...|+.|.. +++.+.++..-.||..| .+-+-+..-.-+..+...-..+.
T Consensus 1 Mkh~l~i~dls~~el~~il~~A~~lk~~~~~~~l~gk~~~~lF~ep-StRTR~SFe~A~~~LGg~~~~l~ 69 (144)
T d2at2a1 1 MKHLTTMSELSTEEIKDLLQTAQELKSGKTDNQLTGKFAANLFFEP-STRTRFSFEVAEKKLGMNVLNLD 69 (144)
T ss_pred CcCcCChhcCCHHHHHHHHHHHHHHHcCCCCccccCCeeeEEEecC-CcchhHHHHHHHHHhcchhhccc
Confidence 479999998 7888888877765 77888899998899987 67777777676666655544443
No 13
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=20.35 E-value=81 Score=24.37 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHhhHHHHHHhhhhhh
Q 013676 209 SLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (438)
Q Consensus 209 ~~l~ea~d~~~~rd~la~L~~~cLsav~ayD~a~e~~e~LdaA~~kf~DIL 259 (438)
+.++.+ -.+++|..+.+|++.....++.-|.+....+ ...|+..|.+.+
T Consensus 53 ~~li~~-~~~~~k~~~~~la~~lf~~le~LD~Aar~kd-~~~a~~~Y~~t~ 101 (112)
T d1nzea_ 53 KTVISA-KPKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 101 (112)
T ss_dssp HHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHh-CCHhhhHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 334433 3577788889999999999999999887776 555666655543
Done!