BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013677
(438 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis
GN=zcchc8 PE=2 SV=1
Length = 743
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 139 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 194
G EI A R CFNCGS H +++CPKPRD+ +N RK+ + + ++N RY
Sbjct: 201 GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDACGE-AGNQNQQRY 259
Query: 195 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 254
+ ++ +PG + E ++ LG+ + + PP+++RMRELGYPPG+L E + + SG+
Sbjct: 260 HAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWL-KEAELENSGL 318
Query: 255 TIYADGEIKEGQEDGEIIETGRPASKR-----KMTTEFPGINAPIP 295
++Y DG+ + DGEI + A K +PG N P
Sbjct: 319 SLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain-containing protein 8 OS=Mus musculus
GN=Zcchc8 PE=2 SV=3
Length = 709
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 149 CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLRP 208
CFNCGS H +KECP PR+ ++ RK++ + S RY+ ++ +P
Sbjct: 232 CFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQQRYHAEEVEERFGRFKP 291
Query: 209 GALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIY-----ADGEIK 263
G + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+ +Y ADGE
Sbjct: 292 GVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGLALYDGNDDADGET- 349
Query: 264 EGQEDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSDSSRDRSHHRL 321
E GEI K+ +PG N P DE R++ + P + +D L
Sbjct: 350 ---ETGEIQNKNVTYDLSKLVN-YPGFNISTPRGIPDEWRMFGSIPMQACQQKDVFASYL 405
Query: 322 NHHSES 327
N + +S
Sbjct: 406 NSNIQS 411
>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus
GN=ZCCHC8 PE=2 SV=1
Length = 613
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 147 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 206
S CFNCGS H +K+CPKPR+ ++ RK+ + S RY+ ++
Sbjct: 126 SHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEAYGEASNQNFQQRYHAEEVEERFGKF 185
Query: 207 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQ 266
+PG + E + LG+ PP+++RMR+LGYPPG+L E + + SG+ +Y DG+
Sbjct: 186 KPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWL-KEAEMEHSGLALY-DGKDDNET 243
Query: 267 EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSDSSRDRSHHRL-NH 323
ED ++ +PG N P DE +++ + P +D H L N
Sbjct: 244 EDEGYLQPKHVTYDVSKLINYPGFNISTPSGIPDEWQIFGSIPMQPSQQKDVFAHYLSNF 303
Query: 324 HSES 327
H+ S
Sbjct: 304 HAPS 307
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens
GN=ZCCHC8 PE=1 SV=2
Length = 707
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 139 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 194
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 274
Query: 195 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 254
+ ++ +PG + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+
Sbjct: 275 HAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGL 333
Query: 255 TIYADGEIKEGQ-EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSD 311
+Y + +G+ E GEI + +PG N P DE R++ + P +
Sbjct: 334 ALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIPMQAC 393
Query: 312 SSRD 315
+D
Sbjct: 394 QQKD 397
>sp|Q5R789|ZCHC8_PONAB Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii
GN=ZCCHC8 PE=2 SV=1
Length = 704
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 139 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 194
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 272
Query: 195 YQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGI 254
+ ++ +PG + E + LG+ + PP+++RMR+LGYPPG+L E + + SG+
Sbjct: 273 HAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWL-KEAELENSGL 331
Query: 255 TIYADGEIKEGQ-EDGEIIETGRPASKRKMTTEFPGINAPIPENA-DE-RLWAARPSSSD 311
+Y + +G+ E GEI + +PG N P DE R++ + P +
Sbjct: 332 ALYDGKDGTDGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGSIPMQAC 391
Query: 312 SSRD 315
+D
Sbjct: 392 QQKD 395
>sp|Q2PE14|ZCHC8_DROME Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila
melanogaster GN=CG4622 PE=1 SV=2
Length = 553
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 147 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 206
S CFNCG HSL++C KPR+ + ARK+ S+ RY+ ++ ++ +
Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKKMTSRTE---------RYHVDTE-QRFGHI 232
Query: 207 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIY-ADGE--IK 263
RPG + +TR +G P +RMR LGYPP +L+ E Q SGI ++ ADG K
Sbjct: 233 RPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLE-EAKVQSSGIALFNADGSEVTK 291
Query: 264 EGQEDGEIIETGRPASKRKMTTEFPGINA 292
+E+GE +K E+PG N
Sbjct: 292 SDEEEGESETFKYDVNK---IVEYPGFNV 317
>sp|P34656|YOTA_CAEEL Uncharacterized protein ZK632.11 OS=Caenorhabditis elegans
GN=ZK632.11 PE=4 SV=1
Length = 453
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 149 CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAG---GKYDG 205
CFNC H+L++C + +D ++ +++ R R + N G +
Sbjct: 111 CFNCDG-EHNLRDCTQRKDFRRISRKKRESGDGRQ---------RVFYNDVGISKQREKH 160
Query: 206 LRPGALDAETRQLLGLGELDPPPWLHRMREL----GYPPGYL 243
+PG + R LGL D P ++RMR L GYPPG+L
Sbjct: 161 FKPGVISDRLRAALGLRGNDIPEHIYRMRRLGLIDGYPPGWL 202
>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1
Length = 436
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 203 YDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEI 262
D RPG + E R ++ L E PPW +M+++G P GY D + IT
Sbjct: 286 VDHKRPGRISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNL----- 340
Query: 263 KEGQEDGEIIETGRPASKRKMTTEFPGI---NAPIPENADERLWAARPS--SSDSSRDRS 317
+G G+II SK++ F + P EN+ E A + D D
Sbjct: 341 -KGDVYGKIIPNHHSRSKKQGRNYFGALISFETPEFENSKEDTQANAENGRQDDKIDDEV 399
Query: 318 HHRLNHHSESIS 329
H+L+H E IS
Sbjct: 400 EHKLDHFQEDIS 411
>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1
Length = 601
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 207 RPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLD 244
RPG + E R+ LG+ PPPWL M+ G PP Y D
Sbjct: 332 RPGDISEELREALGIAPGAPPPWLFAMQRYGPPPSYPD 369
>sp|Q8AII2|GAG_SIVTN Gag polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag PE=3 SV=3
Length = 524
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 59/156 (37%), Gaps = 39/156 (25%)
Query: 78 FFPAIRVGKAKGPAVSFWIDNQTRNQQNKNFIPSDSHGTPLYDRGYAL--GLTSGDG--- 132
F+ IR +A P V W+ +T QN N P H +G L LT+ G
Sbjct: 326 FYKTIRAEQASQP-VKTWM-TETLLVQNAN--PDCKHILKALGQGATLEEMLTACQGVGG 381
Query: 133 ------------SSNLEGGLEIIDDASR---------CFNCGSYSHSLKECPKPRDKDAV 171
+S GG+ ++ R CFNCG H+ + C PR K
Sbjct: 382 PSHKAKILAEAMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCW 441
Query: 172 NNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 207
++ H+ K + +RN NS G + G R
Sbjct: 442 RCGQEGHQMK---DCTTRN------NSTGVNFLGKR 468
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
RC+NCG + H ++CP+PR + + H +K
Sbjct: 398 RCYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAK 431
>sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag PE=3 SV=3
Length = 497
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 207
+CFNCG H K C PR K ++ H+ K + + + +S G + L+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFLQ 449
Query: 208 ----PGALDAETRQLLGLGELDPPP 228
P A AE+ LGLGE P P
Sbjct: 450 SRPEPTAPPAES---LGLGEEIPSP 471
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.4 bits (85), Expect = 0.25, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSAG 200
+CFNCG H+ K C PR K R+ H+ K Q + R + + Q AG
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAG 444
>sp|O89291|GAG_HV193 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag PE=3 SV=3
Length = 492
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSAS 188
+CFNCG + H +EC PR + H +K +N +
Sbjct: 391 KCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA 431
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|P18800|GAG_HV1ND Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag PE=3 SV=3
Length = 497
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+CFNCG H+ K C PR K R+ H+ K
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMK 422
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|Q9JWJ3|SYC_NEIMA Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=cysS PE=3 SV=1
Length = 699
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 318 HHRLNHHSESISRGRYHEQRWSRD--YRDDGPPGV----------DPVSSYPPRYGGYDY 365
HH HH +SI+ H + W + R DG + + Y P +
Sbjct: 479 HHAQTHHGQSIAS---HVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFI 535
Query: 366 YSSHSRSPTRGRSYSDRDRDDYASHGSYSSPYSNRHTSPP-DYDLDRYRDDYSREYLSRS 424
+H RSP +YSD DD + G+ + Y+ +P ++DL +DY+R + +
Sbjct: 536 LRAHYRSPL---NYSDAHLDD--AKGALTRLYTTLKNTPAAEFDLSENVNDYTRRFYAAM 590
Query: 425 MDEY 428
D++
Sbjct: 591 NDDF 594
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 204
+CFNCG H + C PR K ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGKQANFL--------GKYWPPG 446
Query: 205 GLRPG 209
G RPG
Sbjct: 447 GTRPG 451
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.8 bits (81), Expect = 0.69, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 35.8 bits (81), Expect = 0.70, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag PE=1 SV=3
Length = 497
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 207
+CFNCG H K C PR K ++ H+ K + + + +S G + L+
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFLQ 449
Query: 208 ----PGALDAETRQLLGLGELDPPP 228
P A AE+ LG GE P P
Sbjct: 450 SRPEPTAPPAES---LGFGEEIPSP 471
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 204
+CFNCG H K C PR + ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFL--------GKYWPPG 446
Query: 205 GLRPG 209
G RPG
Sbjct: 447 GTRPG 451
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 35.8 bits (81), Expect = 0.73, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.8 bits (81), Expect = 0.75, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|Q9QSR4|GAG_HV1VI Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag PE=3 SV=3
Length = 491
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G ++ +CFNCG H + C PR K R+ H+ K
Sbjct: 375 SNFKGQRRVV----KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 418
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+CFNCG H K C PR K R+ H+ K
Sbjct: 390 KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 423
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAG 200
+CFNCG H K C PR + ++ H+ K +N N R S G
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREVLASGG 447
>sp|Q09763|GEF1_SCHPO Rho guanine nucleotide exchange factor gef1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=gef1 PE=1 SV=1
Length = 753
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 311 DSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDPVSSYPPRY---GGY---- 363
D S +S +RL S GR ++R +D P PVSS R+ G +
Sbjct: 68 DVSESQSEYRL-------SSGRRSRASFARALQDPQTPNTPPVSSQHRRFFSEGSFNLPN 120
Query: 364 ---------DYYSSHSRSPTRGRSYSDRDRDDYASHGSYSSP 396
D +S+S + T R Y DR+R DYA Y+ P
Sbjct: 121 SNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLP 162
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+CFNCG H K C PR K R+ H+ K
Sbjct: 393 KCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMK 426
>sp|Q3ITT7|SYA_NATPD Alanine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=alaS PE=3 SV=1
Length = 932
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 289 GINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPP 348
G++AP+ E D + + D+ RD + + E++ RGR H +R + +Y G P
Sbjct: 391 GVDAPLDELVDMQAERLDYENRDTVRDIVRTEVEKYRETLERGRRHVERLAEEYAQKGDP 450
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 1.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 135 NLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNP 191
N +G +II +CFNCG H K C PR K ++ H+ K Q + R
Sbjct: 383 NFKGPRKII----KCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLREN 438
Query: 192 MRYYQNSAG 200
+ + Q AG
Sbjct: 439 LAFPQGKAG 447
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 199
+CFNCG H K C PR K R+ H+ K Q + R + + Q A
Sbjct: 393 KCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQANFLREDLAFLQGKA 447
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 34.3 bits (77), Expect = 2.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G ++ +CFNCG H + C PR K R+ H+ K
Sbjct: 375 SNFKGQRRVV----KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 418
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+CFNCG H K C PR K ++ H+ K
Sbjct: 385 KCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMK 418
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 33.9 bits (76), Expect = 2.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
+CFNCG H K C PR K R+ H+ K
Sbjct: 390 KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 423
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 33.9 bits (76), Expect = 2.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 113 SHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVN 172
SH + + S D +G I+ +CFNCG H + C PR K
Sbjct: 355 SHKARVLAEAMSQAQHSNDAKRQFKGPKRIV----KCFNCGKEGHIARNCKAPRRKGCWK 410
Query: 173 NARKQHKSKRNQNSASRNPMR 193
++ H+ + N N R
Sbjct: 411 CGQEGHQMRNCTNERQANFFR 431
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.9 bits (76), Expect = 2.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G II +CFNCG H + C PR K ++ H+ K
Sbjct: 382 SNFKGPRRII----KCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMK 425
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 33.9 bits (76), Expect = 2.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSAG 200
+CFNCG H K C PR K ++ H+ K Q + R + + Q AG
Sbjct: 393 KCFNCGKEGHIAKNCRAPRRKGCWKCGKEGHQLKDCTERQANFLREDLAFPQGKAG 448
>sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag PE=3 SV=3
Length = 499
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 113 SHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVN 172
SH + + S D +G I+ +CFNCG H + C PR K
Sbjct: 355 SHKARVLAEAMSQAQHSNDAKRQFKGPKRIV----KCFNCGKEGHIARNCKAPRRKGCWK 410
Query: 173 NARKQHKSKRNQNSASRN 190
++ H+ + N N
Sbjct: 411 CGQEGHQMRNCTNERQAN 428
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 33.5 bits (75), Expect = 3.4, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 135 NLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNP 191
N +G II +CFNCG H + C PR K ++ H+ K Q + R
Sbjct: 377 NFKGQRRII----KCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFFREV 432
Query: 192 MRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDP 226
+ Q A K+ + A +R+L GE +P
Sbjct: 433 LASQQREA-RKFSSEQTRANSPTSRELWVRGEDNP 466
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.5 bits (75), Expect = 3.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 134 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
SN +G I+ +CFNCG H + C PR K ++ H+ K
Sbjct: 376 SNFKGQKRIV----KCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMK 419
>sp|Q9JXE6|SYC_NEIMB Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=cysS PE=3 SV=1
Length = 473
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 318 HHRLNHHSESISRGRYHEQRWSRD--YRDDGPPGV----------DPVSSYPPRYGGYDY 365
HH HH +SI+ H + W + R DG + + Y P +
Sbjct: 253 HHAQTHHGQSIAS---HVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFI 309
Query: 366 YSSHSRSPTRGRSYSDRDRDDYASHGSYSSPYSNRHTSPPDYDL-DRYRDDYSREYLSRS 424
+H RSP +YSD DD + G+ + Y+ +PP + DDY+R +
Sbjct: 310 LRAHYRSPL---NYSDAHLDD--AKGALTRLYTTLKNTPPADPMPSEAGDDYTRRFYVAM 364
Query: 425 MDEYDRFR 432
D++D +
Sbjct: 365 NDDFDTVK 372
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 33.1 bits (74), Expect = 4.3, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 124 ALGLTSGDGSSNLEGGLE--IIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 181
A+ + G + L+GG + +CFNCG H+ + C PR K ++ H+ K
Sbjct: 392 AMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMK 451
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.1 bits (74), Expect = 4.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 199
+CFNCG H K C PR K ++ H+ K Q + R + + Q A
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFFREDLAFQQREA 444
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.1 bits (74), Expect = 4.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 148 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 199
+CFNCG H K C PR K ++ H+ K Q + R + + Q A
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFFREDLAFQQREA 444
>sp|Q5BIR3|THSD1_BOVIN Thrombospondin type-1 domain-containing protein 1 OS=Bos taurus
GN=THSD1 PE=2 SV=1
Length = 849
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 313 SRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHS 370
S+ RSH R +H + S +HE R +R +R+ + P ++ PR +D
Sbjct: 636 SQVRSHSRGSHFRRTAS---FHEARQARPFRERSLSTLTPRPTPAHGPRARTWDQAGERG 692
Query: 371 RSPTRGRSYSDRDRDDYASHGSYSSPYS 398
R P+RG + RD S P S
Sbjct: 693 RPPSRGTALFPEKRDHGPGAAGASGPLS 720
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,115,535
Number of Sequences: 539616
Number of extensions: 9561084
Number of successful extensions: 18972
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 18372
Number of HSP's gapped (non-prelim): 647
length of query: 438
length of database: 191,569,459
effective HSP length: 120
effective length of query: 318
effective length of database: 126,815,539
effective search space: 40327341402
effective search space used: 40327341402
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)