BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013679
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/424 (46%), Positives = 262/424 (61%), Gaps = 8/424 (1%)
Query: 10 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 68
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 69 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 126
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 127 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 186
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 187 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 246
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 247 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 306
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 307 VFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNH 366
+ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDYASGTNH
Sbjct: 308 IVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNH 367
Query: 367 VLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 426
VLPTYGY + L F K TVQ L++EG L + T+A E L AHK AVT R+
Sbjct: 368 VLPTYGYTATCSSLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRV 427
Query: 427 QDIE 430
++
Sbjct: 428 NALK 431
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/424 (46%), Positives = 262/424 (61%), Gaps = 8/424 (1%)
Query: 10 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 68
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 69 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 126
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 127 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 186
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 187 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 246
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 247 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 306
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 307 VFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNH 366
+ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDYASGTNH
Sbjct: 308 IVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNH 367
Query: 367 VLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 426
VLPTYGY + L F K TVQ L++EG L + T+A E L AHK AVT R+
Sbjct: 368 VLPTYGYTATCSSLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRV 427
Query: 427 QDIE 430
++
Sbjct: 428 NALK 431
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 203/398 (51%), Gaps = 15/398 (3%)
Query: 26 SSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVK------ 79
+ I V I+ +R GDA++ + T RFD ++ ELP L+AA +
Sbjct: 33 TDIHQRVTEIIGCIRRDGDAALVELTARFDHFVVDTAA--ALELPRDVLEAAWQALPAEQ 90
Query: 80 -EAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALM 138
+A A I A+ QK G + + VGLYVPGG A PS+ L
Sbjct: 91 AKALREAAERIRAYAERQKLDSWDYREADGTLLGQKITPLDRVGLYVPGGKAAYPSSVLX 150
Query: 139 LSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESC 198
+VPA++AG ++ A P + G + VL A +GV + + GGAQA++A+A+GTE+
Sbjct: 151 NAVPAKVAGVPELIXAVPAPR-GELNALVLAAAYISGVDRVFRIGGAQAVAALAYGTETV 209
Query: 199 PKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQA 258
P+V+KI GPGN YV AK ++ + ID AGPSE+LVI+D P IA DL SQA
Sbjct: 210 PRVDKIVGPGNIYVATAKKLVFG---QVGIDXVAGPSEILVISDGRTDPDWIAXDLFSQA 266
Query: 259 EHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKAL-GHSFMVFARDMLEGIS 317
EH D+Q A++ I + R E +L + D+ + +
Sbjct: 267 EHDEDAQAILISPDAAHLE-AVQASIERLLPGXERAEVIRTSLERRGGXILVDDLEQAAA 325
Query: 318 FSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMY 377
+N APEHL ++V+ E I NAG++F G +T E++GDY +G NHVLPT G AR
Sbjct: 326 VANRIAPEHLELSVESPEVLVESIRNAGAIFXGRYTAEALGDYCAGPNHVLPTSGTARFS 385
Query: 378 GGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGL 415
+ + F K ++ + +G +LG + +A EGL
Sbjct: 386 SPLGVYDFQKRSSLIYCSPDGADQLGRTASLLAWGEGL 423
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 185 AQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPA 232
A AISA+ WG S P+V + G G T +I+ E +++D+P
Sbjct: 69 AGAISALRWGG-SAPRVIFLHGGGQNAHTWDTVIVGLGEPALAVDLPG 115
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 6 LSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERF 54
L L + + LK+R R+DF + M+ + +NRG + +DY E F
Sbjct: 49 LKVLGNPKSDELKSR-RVDFETFLPMLQAVA---KNRGQGTYEDYLEGF 93
>pdb|2BL8|A Chain A, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
pdb|2BL8|B Chain B, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
pdb|2BL8|C Chain C, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
Length = 103
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 31 MVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIY 90
+VH + +D+ D D E KV L+ + P P ++ V + AY N
Sbjct: 8 IVHELYNDISISKDPKYSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAYTNKI 67
Query: 91 AFHLAQKSAETSVENMKGVRCKRVARSIGSVGLY 124
F Q E + N+ + R+ G GLY
Sbjct: 68 RFTEYQ---EELIRNL-----SEIGRTAGINGLY 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,995,358
Number of Sequences: 62578
Number of extensions: 470868
Number of successful extensions: 1354
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 8
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)