RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013679
(438 letters)
>gnl|CDD|215500 PLN02926, PLN02926, histidinol dehydrogenase.
Length = 431
Score = 814 bits (2104), Expect = 0.0
Identities = 363/430 (84%), Positives = 392/430 (91%), Gaps = 2/430 (0%)
Query: 1 MKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLE 60
MKSYRLSEL+ +EV SLKARPRIDFSSI V+PIV++VR+RGDA+VK+YT +FDKV L+
Sbjct: 3 MKSYRLSELSASEVDSLKARPRIDFSSILETVNPIVENVRSRGDAAVKEYTSKFDKVALD 62
Query: 61 KVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAE-TSVENMKGVRCKRVARSIG 119
VVE VS+LPDP LDA VKEAFDVAY+NIYAFHLAQKS E VE M GVRC+RVAR IG
Sbjct: 63 SVVERVSDLPDPVLDADVKEAFDVAYDNIYAFHLAQKSTEKLEVETMPGVRCRRVARPIG 122
Query: 120 SVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHI 179
+VGLYVPGGTAVLPSTALML+VPAQIAGCKTVVLATPP +DGSIC EVLYCAKKAGVTHI
Sbjct: 123 AVGLYVPGGTAVLPSTALMLAVPAQIAGCKTVVLATPPRKDGSICPEVLYCAKKAGVTHI 182
Query: 180 LKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLV 239
LKAGGAQAI+AMAWGT+SCPKV+KIFGPGNQYVTAAKMILQNSEAM+SIDMPAGPSEVLV
Sbjct: 183 LKAGGAQAIAAMAWGTDSCPKVDKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLV 242
Query: 240 IADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASK 299
IAD A+PVH+AADLLSQAEHGPDSQVVLV VGD VDLDAIE+E+ KQCQSLPRGE ASK
Sbjct: 243 IADKTANPVHVAADLLSQAEHGPDSQVVLVAVGD-VDLDAIEEEVEKQCQSLPRGEIASK 301
Query: 300 ALGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGD 359
ALGHSF+V ARDM E ISFSNLYAPEHLIVNV+DAE W I+NAGSVFLG WTPESVGD
Sbjct: 302 ALGHSFIVVARDMAEAISFSNLYAPEHLIVNVEDAESWLDKIDNAGSVFLGRWTPESVGD 361
Query: 360 YASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHK 419
YASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGL+ LGPYVA MAE+EGLEAHK
Sbjct: 362 YASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLQNLGPYVARMAEVEGLEAHK 421
Query: 420 RAVTFRLQDI 429
RAVT RL DI
Sbjct: 422 RAVTLRLGDI 431
>gnl|CDD|216133 pfam00815, Histidinol_dh, Histidinol dehydrogenase.
Length = 413
Score = 607 bits (1567), Expect = 0.0
Identities = 233/417 (55%), Positives = 291/417 (69%), Gaps = 9/417 (2%)
Query: 14 VQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVV---ENVSELP 70
++ L RP I V PI+++V+ GD ++ +YTE+FD V+LE + E + E
Sbjct: 1 LEKLLRRPIQKVDEILKKVKPIIENVKENGDKALLEYTEKFDGVELESLRVSAEEIEEAY 60
Query: 71 DPELDAAVKEAFDVAYNNIYAFHLAQK-SAETSVENMKGVRCKRVARSIGSVGLYVPGGT 129
+ LD ++EA +VA NI FH AQ S + VE GVRC + R I SVGLYVPGGT
Sbjct: 61 E-SLDPELREAIEVAIENIRKFHAAQMPSKDLDVETQPGVRCGQKVRPIESVGLYVPGGT 119
Query: 130 AVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAIS 189
AV PST LML VPA++AGCK +VL +PP +DG + E+LY A AGV I KAGGAQAI+
Sbjct: 120 AVYPSTVLMLVVPAKVAGCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIA 179
Query: 190 AMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVH 249
AMA+GTE+ PKV+KIFGPGN YVTAAK ++ ++ IDMPAGPSEVLVIAD A P
Sbjct: 180 AMAYGTETVPKVDKIFGPGNIYVTAAKRLVSG---LVDIDMPAGPSEVLVIADETADPDF 236
Query: 250 IAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALGHSFMVFA 309
+A+DLLSQAEH PDSQVVLV + + + +E+E+ +Q + LPR E KAL HS +V
Sbjct: 237 VASDLLSQAEHDPDSQVVLVTDSEEL-AEEVEEEVERQLEQLPRKEIVRKALAHSAIVLV 295
Query: 310 RDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLP 369
+D+ E I FSN YAPEHLI+ K+AEK I+NAGS+FLG ++PES GDYASGTNHVLP
Sbjct: 296 KDLEEAIEFSNQYAPEHLIIQTKNAEKLLGKIKNAGSIFLGAYSPESAGDYASGTNHVLP 355
Query: 370 TYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 426
TYGYAR Y G+S+ FLK +TVQ LTEEGLK + V T+AE EGLEAH AV RL
Sbjct: 356 TYGYARQYSGLSVADFLKRITVQELTEEGLKNVAETVMTLAEAEGLEAHAEAVRIRL 412
>gnl|CDD|119329 cd06572, Histidinol_dh, Histidinol dehydrogenase, HisD, E.C
1.1.1.23. Histidinol dehydrogenase catalyzes the last
two steps in the L-histidine biosynthesis pathway, which
is conserved in bacteria, archaea, fungi, and plants.
These last two steps are (i) the NAD-dependent oxidation
of L-histidinol to L-histidinaldehyde, and (ii) the
NAD-dependent oxidation of L-histidinaldehyde to
L-histidine. In most fungi and in the unicellular
choanoflagellate Monosiga bevicollis, the HisD domain is
fused with units that catalyze the second and third
biosynthesis steps in this same pathway.
Length = 390
Score = 585 bits (1510), Expect = 0.0
Identities = 204/390 (52%), Positives = 266/390 (68%), Gaps = 7/390 (1%)
Query: 32 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP--ELDAAVKEAFDVAYNNI 89
V I++DVR RGD ++ +YTE+FD V+LE + + E+ +D +KEA ++A NI
Sbjct: 5 VREIIEDVRERGDEALLEYTEKFDGVELESLRVSEEEIDAAYAAVDPELKEAIELAAENI 64
Query: 90 YAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCK 149
AFH AQ + VE GV + R I VGLYVPGGTA PST LML++PA++AG K
Sbjct: 65 RAFHEAQLPKDWEVETEPGVVLGQRYRPIERVGLYVPGGTAPYPSTVLMLAIPAKVAGVK 124
Query: 150 TVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGN 209
+V+ TPP +DG I +L AK AGV I K GGAQAI+A+A+GTE+ PKV+KI GPGN
Sbjct: 125 EIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGN 184
Query: 210 QYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLV 269
YVTAAK ++ + IDMPAGPSEVLVIAD A+P +AADLLSQAEH PDSQ +LV
Sbjct: 185 IYVTAAKRLVSGD---VGIDMPAGPSEVLVIADETANPEFVAADLLSQAEHDPDSQAILV 241
Query: 270 IVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYAPEHLI 328
+A+E+E+ +Q LPR E A+K+L + ++ D+ E I +N YAPEHL
Sbjct: 242 TT-SEELAEAVEEEVERQLAELPRREIAAKSLLDYGAIILVDDLEEAIELANEYAPEHLE 300
Query: 329 VNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKY 388
+ +D E+ I NAGS+FLG +TPE++GDYA+G NHVLPT G AR Y G+S+D FLK
Sbjct: 301 LQTEDPEELLEKIRNAGSIFLGPYTPEALGDYAAGPNHVLPTGGTARFYSGLSVDDFLKR 360
Query: 389 MTVQSLTEEGLKKLGPYVATMAEIEGLEAH 418
+TVQ ++EGL+ L P VAT+AE EGLEAH
Sbjct: 361 ITVQEYSKEGLRALAPAVATLAEAEGLEAH 390
>gnl|CDD|234853 PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol
dehydrogenase; Reviewed.
Length = 425
Score = 570 bits (1471), Expect = 0.0
Identities = 207/432 (47%), Positives = 271/432 (62%), Gaps = 20/432 (4%)
Query: 4 YRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVV 63
LS +L R R D + + V I++DVR RGDA++ +YTE+FD V+LE +
Sbjct: 5 RWLSLSDAEFRAALPRRAREDDEDVEAAVREILEDVRERGDAALLEYTEKFDGVELESL- 63
Query: 64 ENVSELPDPELDAA-------VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVAR 116
+ + E++AA ++EA + A NI AFH AQK VE GVR + R
Sbjct: 64 ----RVSEEEIEAAYERLDPELREALEEAAENIRAFHEAQKPESWDVETAPGVRLGQRWR 119
Query: 117 SIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGV 176
I VGLYVPGG A PS+ LM ++PA++AG K +V+ TPP DG I +L A AGV
Sbjct: 120 PIERVGLYVPGGKAAYPSSVLMNAIPAKVAGVKEIVMVTPP-PDGEINPAILAAAALAGV 178
Query: 177 THILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSE 236
+ K GGAQAI+A+A+GTES PKV+KI GPGN YVTAAK ++ + IDM AGPSE
Sbjct: 179 DEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIYVTAAKRLVFGV---VGIDMIAGPSE 235
Query: 237 VLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDL-DAIEQEISKQCQSLPRGE 295
+LVIAD A P +AADLLSQAEH PD+Q +LV +L +A+ E+ +Q +LPR E
Sbjct: 236 ILVIADETADPDFVAADLLSQAEHDPDAQSILVT--TSEELAEAVAAEVERQLATLPRAE 293
Query: 296 FASKAL-GHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTP 354
A +L G ++ D+ E I SN YAPEHL + +D I NAG++FLG +TP
Sbjct: 294 IARASLEGQGAIILVDDLEEAIELSNAYAPEHLEIQTEDPRALLDRIRNAGAIFLGPYTP 353
Query: 355 ESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEG 414
ES+GDYA+G NHVLPT G AR G+S+ FLK +V L++EGLK LGP + T+AE EG
Sbjct: 354 ESLGDYAAGPNHVLPTSGTARFSSGLSVYDFLKRSSVIELSKEGLKALGPAIVTLAEAEG 413
Query: 415 LEAHKRAVTFRL 426
L+AH RAV RL
Sbjct: 414 LDAHARAVRVRL 425
>gnl|CDD|232808 TIGR00069, hisD, histidinol dehydrogenase. This model describes a
polypeptide sequence catalyzing the final step in
histidine biosynthesis, found sometimes as an
independent protein and sometimes as a part of a
multifunctional protein [Amino acid biosynthesis,
Histidine family].
Length = 393
Score = 539 bits (1392), Expect = 0.0
Identities = 202/402 (50%), Positives = 267/402 (66%), Gaps = 17/402 (4%)
Query: 32 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAA-------VKEAFDV 84
V I++DVR RGD ++ +YTE+FD V L+ + + + E++AA +KEA ++
Sbjct: 1 VKDIIEDVRARGDEALLEYTEKFDGVTLDSL-----RVSEEEIEAAYAAVDPELKEALEL 55
Query: 85 AYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQ 144
A NI AFH AQ VE GV + R + VGLYVPGG A PST LM ++PA+
Sbjct: 56 AAENIRAFHEAQLPRSWEVETEPGVILGQRVRPLERVGLYVPGGRAPYPSTVLMTAIPAK 115
Query: 145 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKI 204
+AG K +V+ TPP +DG I VL AK AGV + K GGAQAI+A+A+GTE+ PKV+KI
Sbjct: 116 VAGVKEIVVCTPPGKDGKINPAVLAAAKLAGVDEVYKVGGAQAIAALAYGTETVPKVDKI 175
Query: 205 FGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDS 264
GPGN YVTAAK ++ + IDMPAGPSEVLVIAD A+P +AADLLSQAEH PD+
Sbjct: 176 VGPGNIYVTAAKKLVF---GDVGIDMPAGPSEVLVIADETANPEFVAADLLSQAEHDPDA 232
Query: 265 QVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYA 323
Q +LV + + +A+++EI +Q +LPR E A K+L + ++ D+ E I SN YA
Sbjct: 233 QAILVTTSEEL-AEAVQEEIERQLATLPRREIARKSLEDNGAIILVDDLEEAIEISNDYA 291
Query: 324 PEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLD 383
PEHL + K+ E+ I NAGS+FLG +TPE+ GDYA+G NHVLPT G AR Y G+S+
Sbjct: 292 PEHLELQTKNPEELLPKIRNAGSIFLGPYTPEAAGDYAAGPNHVLPTGGTARFYSGLSVL 351
Query: 384 SFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFR 425
FLK +TVQ L++EGL +L P V T+AE EGLEAH +V R
Sbjct: 352 DFLKRITVQRLSKEGLAELAPAVETLAEAEGLEAHANSVRIR 393
>gnl|CDD|223219 COG0141, HisD, Histidinol dehydrogenase [Amino acid transport and
metabolism].
Length = 425
Score = 532 bits (1373), Expect = 0.0
Identities = 205/432 (47%), Positives = 272/432 (62%), Gaps = 20/432 (4%)
Query: 9 LTHAEVQSLKARPRIDFSSI--FSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENV 66
LT RPR + V PI++DV+ RGDA++ +YT +FD V+ + +
Sbjct: 4 LTTQSPDFALLRPRRSVEEVIEVRTVRPIIEDVKERGDAALLEYTAKFDGVEPDNL---- 59
Query: 67 SELPDPELDAA-------VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIG 119
+ E+DAA VKEA +VA NI AFH AQ + VE GV + R I
Sbjct: 60 -RVSAAEIDAAYQRLDPEVKEALEVAAENIEAFHEAQLPKDWLVETEPGVVLGQRWRPIE 118
Query: 120 SVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHI 179
VGLYVPGG A PST LM +VPA++AG + +V+ TPP +DG + E+L A+ AGV +
Sbjct: 119 RVGLYVPGGKAAYPSTVLMNAVPAKVAGVEEIVVVTPPPKDG-VNPEILAAARLAGVDEV 177
Query: 180 LKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLV 239
K GGAQAI+A+A+GTE+ PKV+KI GPGN YVTAAK ++ + IDM AGPSEVLV
Sbjct: 178 YKVGGAQAIAALAYGTETVPKVDKIVGPGNAYVTAAKRLVSGV---VGIDMIAGPSEVLV 234
Query: 240 IADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASK 299
IAD A+P +AADLLSQAEH PD+Q +LV + + +A+E + +Q ++LPR E A K
Sbjct: 235 IADETANPDFVAADLLSQAEHDPDAQAILVTDSEEL-AEAVEAAVERQLETLPRAEIARK 293
Query: 300 ALGHSFMVF-ARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVG 358
AL + + D+ E + SN YAPEHL + ++ + I NAGS+FLG ++PES+G
Sbjct: 294 ALENYGAIILVDDLDEAVEISNEYAPEHLELQTENPRELLGKIRNAGSIFLGHYSPESLG 353
Query: 359 DYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAH 418
DYA+G NHVLPT G AR G+S+ FLK TVQ L+EEGL +L V T+AE EGL AH
Sbjct: 354 DYAAGPNHVLPTSGTARFSSGLSVYDFLKRSTVQELSEEGLARLAETVITLAEAEGLTAH 413
Query: 419 KRAVTFRLQDIE 430
AV RL+ +E
Sbjct: 414 AEAVRIRLERLE 425
>gnl|CDD|237103 PRK12447, PRK12447, histidinol dehydrogenase; Reviewed.
Length = 426
Score = 340 bits (874), Expect = e-114
Identities = 156/427 (36%), Positives = 228/427 (53%), Gaps = 29/427 (6%)
Query: 15 QSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPEL 74
+SL+ R D S + V I+ D+ RGDA+V++Y+ +FDK L E+
Sbjct: 10 KSLEKRAETD-SKVRETVEAILADIEARGDAAVREYSRKFDKWSPGSFR-----LSAAEI 63
Query: 75 DAA-------VKEAFDVAYNNIYAFHLAQKSA--ETSVENMKGVRCKRVARSIGSVGLYV 125
DAA VKE A + + F AQ+ + + VE + GV + SVG YV
Sbjct: 64 DAAVAKVPEQVKEDIRFAQDQVRRFAEAQRDSLQDLEVETLPGVILGHRNIPVNSVGCYV 123
Query: 126 PGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGA 185
PGG L ++A M + A++AG K V+ TPP G ++ AG I GG
Sbjct: 124 PGGRYPLVASAHMSVLTAKVAGVKRVIACTPPFP-GEPPPAIVAAMHLAGADEIYVLGGV 182
Query: 186 QAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYA 245
QA++AMA+GTE+ V+ + GPGN YV AK L + ID+ AGP+E LVIAD A
Sbjct: 183 QAVAAMAYGTETIKPVDMLVGPGNAYVAEAKRQLF---GRVGIDLFAGPTETLVIADDTA 239
Query: 246 SPVHIAADLLSQAEHGPDSQVVLVI----VGDGVDLDAIEQEISKQCQSLPRGEFASKAL 301
P +A DLL QAEHGP+S VL+ + + V L IE+ ++ LP + AS A
Sbjct: 240 DPELVATDLLGQAEHGPNSPAVLITTSRKLAEEV-LAEIERLLAI----LPTADVASAAW 294
Query: 302 -GHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDY 360
+ ++ D+ E ++ ++ YA EH+ V +D + + + N G++FLGE T + GD
Sbjct: 295 RDYGEVILCDDLEEMVAEADRYASEHVQVMTEDPDWFLENMTNYGALFLGERTNVAYGDK 354
Query: 361 ASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKR 420
GTNHVLPT G AR GG+ + FLK +T Q +T+E ++G Y + + +EG E H R
Sbjct: 355 VIGTNHVLPTSGAARYTGGLWVGKFLKTVTYQRVTDEASAEIGEYCSRLCRLEGFEGHAR 414
Query: 421 AVTFRLQ 427
R++
Sbjct: 415 QADIRVR 421
>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
Length = 416
Score = 260 bits (666), Expect = 6e-83
Identities = 131/402 (32%), Positives = 220/402 (54%), Gaps = 10/402 (2%)
Query: 27 SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP--ELDAAVKEAFDV 84
S++ ++ I +V+ GD ++K Y FD K + + + ++ LD K+A
Sbjct: 20 SLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQ 79
Query: 85 AYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQ 144
+Y I A+ + K +T+ + + V C + + SVG+YVPGG A PST LM + AQ
Sbjct: 80 SYERIKAYQESIK--QTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQ 137
Query: 145 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKI 204
+AG + +V+ TPP +G + +EVL V + + GGAQ+I+A+ +GTE+ PKV+KI
Sbjct: 138 VAGVENIVVVTPPQPNG-VSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKI 196
Query: 205 FGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDS 264
GPGNQ+V AK L + ID AGP+E+ +I D A I D+ +QAEH +
Sbjct: 197 VGPGNQFVAYAKKYLF---GQVGIDQIAGPTEIALIIDETADLDAIVYDVFAQAEHDELA 253
Query: 265 QVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYA 323
+ VI D L +E I+K ++ R + SK++ +++ A + E N A
Sbjct: 254 RT-YVISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIA 312
Query: 324 PEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLD 383
PEH + + + + ++ G++F+G ++PE +GDY +G +HVLPT AR G+S++
Sbjct: 313 PEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVN 372
Query: 384 SFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFR 425
FL TV L+++ +++ +A +E L H++++ R
Sbjct: 373 DFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIR 414
>gnl|CDD|172307 PRK13769, PRK13769, histidinol dehydrogenase; Provisional.
Length = 368
Score = 131 bits (332), Expect = 1e-34
Identities = 117/394 (29%), Positives = 178/394 (45%), Gaps = 41/394 (10%)
Query: 32 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVKEA---FDVAYNN 88
V IVDDV RG + +Y+ER D V E + DP + AA EA + Y+
Sbjct: 13 VEKIVDDVAERGLQAALEYSERLDGVAPEAALVEPRPGGDPAVVAAALEAAKSLEALYSR 72
Query: 89 IYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGC 148
+ +V+ GV + + LYVP A ST +ML+VPA+ AG
Sbjct: 73 L--------KPPEAVDFYGGVLRSVFWKPVRRAALYVP---ARYVSTLVMLAVPARAAGV 121
Query: 149 KTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPG 208
+ + + TPP + E+L AK+ GV +L GG ++ + V+ + GPG
Sbjct: 122 EEIYVVTPPR---GVTGELLAVAKELGVKGVLAIGGPHGLAYAVFHM----GVDMVAGPG 174
Query: 209 NQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVL 268
YV AAK +L + ID GP+E++V A+ P L+Q EHGP S
Sbjct: 175 GLYVQAAKYVLSQ---YVGIDGIEGPTELVVYAEGVP-PEVAVRGALAQLEHGPTS-FAY 229
Query: 269 VIVGDGVDLDAIEQEISKQCQSLPRGEFASKALGHSFMVFARDMLEGISFSNLYAPEHLI 328
++ D L A E EI ++ ++ G + + + E + F + APEHL
Sbjct: 230 LLSTDAELLKAAE-EIYRRERTSSMGPLEVRKVA--------GVEEAVRFIDEIAPEHL- 279
Query: 329 VNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKY 388
V + + N G+V + P DY +G +HVLPT G AR G ++ +F+K
Sbjct: 280 -EVWGRREVAYRVRNVGAVSVN--MPSPYLDYVAGISHVLPTGGTARWRGIITPLTFMKP 336
Query: 389 MTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAV 422
+ V G +L +AE EG + H+ A+
Sbjct: 337 IGVAEAV--GELELAEAARRLAEYEGFQYHREAL 368
>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CNK1,2,3-suppressor
subfamily. SAM (sterile alpha motif) domain of CNK
(connector enhancer of kinase suppressor of ras (Ksr))
subfamily is a protein-protein interaction domain. CNK
proteins are multidomain scaffold proteins containing a
few protein-protein interaction domains and are required
for connecting Rho and Ras signaling pathways. In
Drosophila, the SAM domain of CNK is known to interact
with the SAM domain of the aveugle protein, forming a
heterodimer. Mutation of the SAM domain in human CNK1
abolishes the ability to cooperate with the Ras
effector, supporting the idea that this interaction is
necessary for proper Ras signal transduction.
Length = 69
Score = 33.0 bits (76), Expect = 0.032
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 350 GEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLG 403
+W+P+ V D+ G + L Y Y V+ + L ++ Q L G+ K+G
Sbjct: 2 AKWSPKQVTDWLKGLDDCLQQYIYTFEREKVTGEQLLN-LSPQDLENLGVTKIG 54
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 35.4 bits (81), Expect = 0.048
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 13 EVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP 72
E S +A DF + F +H V V N + K +E FDK +L++V +N++++
Sbjct: 41 EDSSNEALTNADFKNAFEALHSKVKLV-NDFSSGKKLKSEGFDK-ELKEVAQNMTKIT-- 96
Query: 73 ELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVL 132
DAA ++A AY+ + A +S E ++ K R+ VG Y GT V
Sbjct: 97 --DAATRQAVQSAYDAVRA--TVVESQEKELQQTKTDLVNAFLRTKSQVGHYAADGTYVP 152
Query: 133 PSTALMLSVPAQIAGCKTVVLATPPSQ 159
+ + I T + PP +
Sbjct: 153 AGGTYIPAGGTYILASGTYIPPNPPRE 179
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 30.6 bits (70), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 251 AADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQ 287
AA LL + P+ L++VGDG D +E K+
Sbjct: 214 AAALL--LKKFPN--ARLLLVGDGPDRANLELLALKE 246
>gnl|CDD|225948 COG3414, SgaB, Phosphotransferase system, galactitol-specific IIB
component [Carbohydrate transport and metabolism].
Length = 93
Score = 28.7 bits (65), Expect = 1.8
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 241 ADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQS 290
ADI + +A + + +VI G+G+D++ I+Q++ + +
Sbjct: 50 ADIIVTSTKLADEF------EDIPKGYVVITGNGMDIEEIKQKLLEILKK 93
>gnl|CDD|119356 cd02877, GH18_hevamine_XipI_class_III, This conserved domain family
includes xylanase inhibitor Xip-I, and the class III
plant chitinases such as hevamine, concanavalin B, and
PPL2, all of which have a glycosyl hydrolase family 18
(GH18) domain. Hevamine is a class III endochitinase
that hydrolyzes the linear polysaccharide chains of
chitin and peptidoglycan and is important for defense
against pathogenic bacteria and fungi. PPL2 (Parkia
platycephala lectin 2) is a class III chitinase from
Parkia platycephala seeds that hydrolyzes beta(1-4)
glycosidic bonds linking
2-acetoamido-2-deoxy-beta-D-glucopyranose units in
chitin.
Length = 280
Score = 30.3 bits (69), Expect = 2.0
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 335 EKWESIIENAG--SVFLGEWTPESVGDYASG-------TNHVLPTYGYARMYGGVSL 382
+ W S + VFLG P S SG + VLP + +GGV L
Sbjct: 208 DTWTSWAKATSNAKVFLG--LPASPEAAGSGYVDPSELASLVLPVKQKSPNFGGVML 262
>gnl|CDD|211414 cd11573, GH99_GH71_like, Glycoside hydrolase families 71, 99, and
related domains. This superfamily of glycoside
hydrolases contains families GH71 and GH99 (following
the CAZY nomenclature), as well as other members with
undefined function and specificity.
Length = 284
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 325 EHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYG-GVSLD 383
L + E ++ + +G WTP V + T+ + G
Sbjct: 111 PGLAYTASEWEALKAQLRAGCPYMIGLWTPWRVPNRDMITDMFDGASPWTPWRGTNPEEA 170
Query: 384 SFLKYMTVQSLTEEGLKKLGPYVATM 409
+ E Y+ T+
Sbjct: 171 YGHGVKNWRPDQEWMGANGKGYIPTV 196
>gnl|CDD|239249 cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX,
containing a redox active CXXC motif, encoded by a
genetic locus (sox operon) involved in thiosulfate
oxidation. Sulfur bacteria oxidize sulfur compounds to
provide reducing equivalents for carbon dioxide fixation
during autotrophic growth and the respiratory electron
transport chain. It is unclear what the role of SoxW is,
since it has been found to be dispensable in the
oxidation of thiosulfate to sulfate. SoxW is
specifically kept in the reduced state by SoxV, which is
essential in thiosulfate oxidation.
Length = 125
Score = 28.8 bits (65), Expect = 2.4
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 58 KLEKVVENVSELPDPELDAAVKEAFDVAYNNIY--AFHLAQKSAETS 102
KL++ L DP + A ++ F V Y NI S
Sbjct: 31 KLKRDY-----LNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALS 72
>gnl|CDD|235247 PRK04191, rps3p, 30S ribosomal protein S3P; Reviewed.
Length = 207
Score = 29.4 bits (67), Expect = 2.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 42 RGDASVKDYTERFDKV-KLEKVVENVSELPDPELDAAV 78
RG ++++ TE +K LE +V E+ +PEL+A V
Sbjct: 57 RGGKNIRELTEILEKKFGLENPQIDVKEVENPELNARV 94
>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif. Widespread domain in
signalling and nuclear proteins. In EPH-related tyrosine
kinases, appears to mediate cell-cell initiated signal
transduction via the binding of SH2-containing proteins
to a conserved tyrosine that is phosphorylated. In many
cases mediates homodimerisation.
Length = 68
Score = 27.6 bits (62), Expect = 2.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 351 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 410
+W+PESV D+ L Y G+ L + + L E G+ KLG +
Sbjct: 3 QWSPESVADWLESIG--LEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILK 60
Query: 411 EIEGLEAH 418
I+ L+
Sbjct: 61 AIQKLKEQ 68
>gnl|CDD|224867 COG1956, COG1956, GAF domain-containing protein [Signal
transduction mechanisms].
Length = 163
Score = 29.2 bits (66), Expect = 3.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 236 EVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGV----DLDAIE 281
E + + D++A P HIA D S +E VV + + D+D+
Sbjct: 93 ETVRVDDVHAFPGHIACDAASNSE-----IVVPIFKDGKLIGVLDIDSPT 137
>gnl|CDD|185279 PRK15381, PRK15381, pathogenicity island 2 effector protein SseJ;
Provisional.
Length = 408
Score = 29.6 bits (66), Expect = 3.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 347 VFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSF 385
VF G+ +S+G T+H+LP+YG + +GG + F
Sbjct: 146 VFFGDSLSDSLGRMFEKTHHILPSYG--QYFGGRFTNGF 182
>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase.
This family consists of (Uracil-5-)-methyltransferases
EC:2.1.1.35 from bacteria, archaea and eukaryotes. A
5-methyluridine (m(5)U) residue at position 54 is a
conserved feature of bacterial and eukaryotic tRNAs. The
methylation of U54 is catalyzed by the
tRNA(m5U54)methyltransferase, which in Saccharomyces
cerevisiae is encoded by the nonessential TRM2 gene. It
is thought that tRNA modification enzymes might have a
role in tRNA maturation not necessarily linked to their
known catalytic activity.
Length = 353
Score = 29.7 bits (67), Expect = 3.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 52 ERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVR 110
+ F +V +E+ P ++AA +++A NNI + + SAE + M GVR
Sbjct: 217 QNFRRVL-------ATEIAKPSVNAAQ---YNIAANNIDNVQIIRMSAEEFTQAMNGVR 265
>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase. This
family consists exclusively of proteins believed to act
as tRNA (uracil-5-)-methyltransferase. All members of
far are proteobacterial. The seed alignment was taken
directly from pfam05958 in Pfam 12.0, but higher cutoffs
are used to select only functionally equivalent
proteins. Homologous proteins excluded by the higher
cutoff scores of this model include other uracil
methyltransferases, such as RumA, active on rRNA
[Protein synthesis, tRNA and rRNA base modification].
Length = 353
Score = 29.7 bits (67), Expect = 3.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 52 ERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVR 110
+ F +V +E+ P ++AA +++A NNI + + SAE + M GVR
Sbjct: 217 QNFRRVL-------ATEIAKPSVNAAQ---YNIAANNIDNVQIIRMSAEEFTQAMNGVR 265
>gnl|CDD|106985 PHA00680, PHA00680, hypothetical protein.
Length = 143
Score = 28.2 bits (62), Expect = 5.9
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 312 MLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVF 348
+L ++ ++L APE L + A+++ +++E+AG VF
Sbjct: 94 LLNALAAADLDAPESLKAELDLAKQFRALVEDAGDVF 130
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 28.5 bits (64), Expect = 6.7
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 258 AEHGPDSQVVLVIVGDGVDLDAIEQEISK 286
+ GPD++ LVI+GDG + +E +
Sbjct: 215 RKEGPDAR--LVILGDGPLREELEALAKE 241
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 28.5 bits (64), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 265 QVVLVIVGDGVDLDAIEQEISK 286
V LVIVGDG +A+E ++
Sbjct: 233 DVHLVIVGDGPLREALEALAAE 254
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 28.4 bits (64), Expect = 8.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 307 VFARDMLEGISFS--NLYAPEHLIVNVKDAEK-WESIIENAGSV 347
+ L+G SF+ N Y + L KD ++ W SI+ N GSV
Sbjct: 449 YYTHKTLKG-SFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSV 491
>gnl|CDD|223170 COG0092, RpsC, Ribosomal protein S3 [Translation, ribosomal
structure and biogenesis].
Length = 233
Score = 28.0 bits (63), Expect = 8.9
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 56 KVKLEKVVENVSELPDPELDAAVKEAFDVAYN--NIYAFHLAQKSA 99
E V N+ E+ PELDA + A +A +F A K A
Sbjct: 83 LFGKENVQINIEEVKKPELDAQL-VAESIAQQLERRVSFRRAMKRA 127
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 28.1 bits (63), Expect = 9.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 242 DIYASPVHIAADLLSQAEHGPD-SQVVLVIVGDG 274
D+Y P AD L+ AE D S+V L VGDG
Sbjct: 124 DLY-HPCQALADFLTLAEQFGDVSKVKLAYVGDG 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,153,803
Number of extensions: 2170692
Number of successful extensions: 2262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 43
Length of query: 438
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 338
Effective length of database: 6,502,202
Effective search space: 2197744276
Effective search space used: 2197744276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)