RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013679
(438 letters)
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 639 bits (1651), Expect = 0.0
Identities = 202/432 (46%), Positives = 271/432 (62%), Gaps = 8/432 (1%)
Query: 4 YRLSELTHAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKV 62
+ T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + +
Sbjct: 7 IDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTAL 66
Query: 63 VENVSELPD--PELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGS 120
+ E+ L +K+A VA NI FH AQK VE GVRC++V R + S
Sbjct: 67 KVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVAS 126
Query: 121 VGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHIL 180
VGLY+PGG+A L ST LML+ PA IAGCK VVL +PP I E+LY A+ GV +
Sbjct: 127 VGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVF 182
Query: 181 KAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVI 240
GGAQAI+A+A+GTES PKV+KIFGPGN +VT AK + +IDMPAGPSEVLVI
Sbjct: 183 NVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVI 242
Query: 241 ADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKA 300
AD A+P +A+DLLSQAEHGPDSQV+L+ + + + + +Q LPR E A +A
Sbjct: 243 ADSGATPDFVASDLLSQAEHGPDSQVILLTPAADM-ARRVAEAVERQLAELPRAETARQA 301
Query: 301 LGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDY 360
L S ++ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDY
Sbjct: 302 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 361
Query: 361 ASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKR 420
ASGTNHVLPTYGY + L F K MTVQ L++EG L + T+A E L AHK
Sbjct: 362 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 421
Query: 421 AVTFRLQDIEAR 432
AVT R+ ++ +
Sbjct: 422 AVTLRVNALKEQ 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 1e-09
Identities = 80/514 (15%), Positives = 156/514 (30%), Gaps = 184/514 (35%)
Query: 3 SYR-LSELTHAEVQ-SLKARPRIDFSSI------FSMVHPIVDDVRNRGD--ASVKDYTE 52
S R L+ L+H ++ L P F F+ + P + D + +
Sbjct: 5 STRPLT-LSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 53 RFDKVKLEKVVENVSELPDPELDAAVK---EAFDVAY---NNIYAF--HLAQKSAETSVE 104
+F L V V + D + F+ Y N+I+A L Q++ +T++
Sbjct: 63 KF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN-DTTL- 116
Query: 105 NMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSIC 164
V+ K + ++ Y+ TA +++ K S
Sbjct: 117 ----VKTKELIKN------YI---------TARIMA--------KRPFDKKSNS------ 143
Query: 165 KEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEA 224
L+ A G + +A IFG G Q
Sbjct: 144 --ALFRAVGEGNAQL-----------VA-----------IFG-G-----------Q---- 163
Query: 225 MISIDMPAGPSEVLV--IADIYASP-------VHIAADLLSQ-AEHGPDSQVVLVIVGDG 274
G ++ + D+Y + + +A+ LS+ D++ V G
Sbjct: 164 --------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQG 212
Query: 275 VDLDA-IEQEISKQCQSLPRGEFASKA-----------LGHSFMVFARDMLEGISFSNLY 322
+++ +E + P ++ L H ++V A+ + G + L
Sbjct: 213 LNILEWLENP-----SNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLL--GFTPGELR 264
Query: 323 APEH-LIVNVKD---------AEKWESIIENAGSV-----FLG----EWTP-----ESVG 358
+ + + + WES + F+G E P S+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 359 DYASGTNHVLPTYGYARMYG--GVSLDSFLKYM--TVQSLTEEGLKKL------GP--YV 406
+ + N +P+ M ++ + Y+ T L K++ G V
Sbjct: 325 EDSLENNEGVPSP----MLSISNLTQEQVQDYVNKTNSHLPAG--KQVEISLVNGAKNLV 378
Query: 407 AT--MAEIEGLEAHKRAVTFRLQDIEARQVSSKR 438
+ + GL R ++R S+R
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 54.3 bits (130), Expect = 6e-08
Identities = 71/433 (16%), Positives = 130/433 (30%), Gaps = 158/433 (36%)
Query: 2 KSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASV----------KDYT 51
K+Y A + + + + S++F V G+A + DY
Sbjct: 124 KNY-----ITARIMAKRPFDKKSNSALFRAV--------GEGNAQLVAIFGGQGNTDDY- 169
Query: 52 ERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQ--KSAETSVENMKGV 109
F+ EL ++ + Y + K + ++ + +
Sbjct: 170 --FE-----------------EL----RDLYQ-----TYHVLVGDLIKFSAETLSEL--I 199
Query: 110 RCKRVARSIGSVGLYVPG---GTAVLPSTALMLSVP--------AQIA----GCKTVVLA 154
R A + + GL + + P +LS+P Q+A K +L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLG 257
Query: 155 TPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAIS-AMAWGTESCPKVEKIFGPGNQYVT 213
P + S K ++ G+ + A AI+ +W ES F +V+
Sbjct: 258 FTPGELRSYLKGATGHSQ--GL--VT----AVAIAETDSW--ES-------F-----FVS 295
Query: 214 AAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGD 273
K I + I G + P I D L E P L I
Sbjct: 296 VRKAI----TVLFFI----G-VRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISN- 343
Query: 274 GVDLDAIEQEISKQCQSLPRGEFASKAL--GHSFMV---FARDMLEG------------- 315
+ + ++ ++K LP G+ +L G +V + L G
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPSG 401
Query: 316 ------------ISFSNLY----APEH---LIVNVKDAEKWESIIENAGSVFLGEWTPES 356
+ FSN + +P H L A + I ++ + + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLL----VPAS--DLINKDLVKNNV-SFNAKD 454
Query: 357 ----VGDYASGTN 365
V D G++
Sbjct: 455 IQIPVYDTFDGSD 467
Score = 44.3 bits (104), Expect = 8e-05
Identities = 46/311 (14%), Positives = 85/311 (27%), Gaps = 119/311 (38%)
Query: 6 LSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRN-RGDAS----VKDYTERFDKVKLE 60
++ L V+ +A P S++ D + N G S + + T + +++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPP--SILE---DSLENNEGVPSPMLSISNLT----QEQVQ 350
Query: 61 KVVENV-SELP-DPELDAAVKEAFDVAYNNI--------YAF--HLAQKSAETSVENMKG 108
V S LP +++ ++ N + Y L + A + ++ +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 109 VRCKRVARSIGSVGLYVPGGTAVLPSTA-----LMLSVPAQI---AGCKTVV-----LAT 155
+R + LP + L++ I V +
Sbjct: 408 PFSERKLK----------FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 156 P--PSQDGS----------------ICKEVLY--CAKKAGVTHILKAGGAQAISAMAWGT 195
P + DGS I + + + THIL
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--------------- 502
Query: 196 ESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLL 255
FGPG + +N + G V VI +A L
Sbjct: 503 --------DFGPGGA-SGLGVLTHRNKDG-------TG---VRVI---------VAGTL- 533
Query: 256 SQAEHGPDSQV 266
+ PD
Sbjct: 534 ---DINPDDDY 541
Score = 39.6 bits (92), Expect = 0.002
Identities = 51/275 (18%), Positives = 80/275 (29%), Gaps = 65/275 (23%)
Query: 34 PIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSEL---PDPELDAAVKEAFDVAYNNIY 90
DV NR D KD T F L+ V+ N L E ++E Y
Sbjct: 1640 KAAQDVWNRADNHFKD-TYGFSI--LDIVINNPVNLTIHFGGEKGKRIREN--------Y 1688
Query: 91 AFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKT 150
+ + + + ++ K K + S G +L +T Q A
Sbjct: 1689 SAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKG--LLSATQF-----TQPA---- 1735
Query: 151 VVLATPPSQDGSI-CKEVLYCAKKAGVTHILK--AG---G---AQAISAMAWGTESCPKV 201
+ E L K G+ AG G A A A ES +V
Sbjct: 1736 -LTLM------EKAAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 202 EKIFGPGNQYVTAAKMILQNSEAMISIDMPA-GPSEVLVIADIYASPVHIAADLLSQAEH 260
+F G T + ++ + M A P V A + + + +
Sbjct: 1786 --VFYRGM---TMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEALQYVVERVGKRTG 1838
Query: 261 G---------PDSQVVLVIVGDGVDLDAIEQEISK 286
+ Q V GD LD + ++
Sbjct: 1839 WLVEIVNYNVENQQYV--AAGDLRALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 67/475 (14%), Positives = 139/475 (29%), Gaps = 150/475 (31%)
Query: 44 DASVKDYTERFDKVKLEKVVENVSELPDPEL-------------DAAVKEAFDVAYNNIY 90
+ KD + + ++ ++++ D + V++ + Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 91 AFHLAQKSAETSVENMKGVR-CKRVARSIGSVGLYVPGGTAVLPS-----TALMLSVPAQ 144
F ++ E +M ++ R ++ + L AL+ PA+
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 145 I------AGC-KTVVLATPPSQDGSICK-EVLYCAKKAGVTHILKAGGAQAISAMAWGTE 196
G KT +A +C + C + L
Sbjct: 152 NVLIDGVLGSGKT-WVA------LDVCLSYKVQCKMDFKI-FWLNLK------------- 190
Query: 197 SCPKVEKIFGPGNQ-YVTAAKMILQNSEAMISIDMPAG---------------PSEVLVI 240
+C E + + S+ +I + + +LV+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 241 ADIYASPVHIAA-----------------DLLSQAEHGPDSQVVLVIVGDGVDLDAIEQE 283
++ + A D LS A + + L + D ++
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT---THISLDHHSMTLTPDEVKSL 306
Query: 284 ISK----QCQSLPRGEFASKALGHSFMV---FARDMLEGISFSNLYAPEHLIVNVKDAEK 336
+ K + Q LPR + L + A + +G++ + + +H+ + +K
Sbjct: 307 LLKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDNW--KHV-----NCDK 354
Query: 337 WESIIEN---------------AGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVS 381
+IIE+ SVF P S H+ PT + ++ V
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSA--------HI-PTILLSLIWFDVI 400
Query: 382 -------LDSFLKYMTVQSLTEEGLKKL-----GPYVATMAEIEGLEA-HKRAVT 423
++ KY SL E+ K+ Y+ ++E A H+ V
Sbjct: 401 KSDVMVVVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Score = 45.6 bits (107), Expect = 3e-05
Identities = 63/492 (12%), Positives = 128/492 (26%), Gaps = 200/492 (40%)
Query: 13 EVQSLKARPRIDFSSIFSMVHP----IVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 68
+ S++A R S + ++ +V+N K
Sbjct: 226 RIHSIQAELRRLLKS---KPYENCLLVLLNVQNA------------------KAW----- 259
Query: 69 LPDPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCK-----R---VARSIGS 120
AF+ + CK R V + +
Sbjct: 260 -----------NAFN-------------------------LSCKILLTTRFKQVTDFLSA 283
Query: 121 VGLYVPGGTAVLPSTAL----MLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGV 176
+ S L + S+ + C+ L P + +
Sbjct: 284 ATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PRE---VLT----------- 324
Query: 177 THILKAGGAQAISAMA------------WGTESCPKVEKIFGPGNQYVTAAKMILQNSEA 224
T+ +S +A W +C K+ I + L E
Sbjct: 325 TNPR------RLSIIAESIRDGLATWDNWKHVNCDKLTTII----------ESSLNVLEP 368
Query: 225 --------MISIDMPAG---PSEVLVI---ADIYASPVHIAADL--LSQAEHGPDSQVVL 268
+S+ P P+ +L + I + + + L S E P
Sbjct: 369 AEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-- 425
Query: 269 VIVGDGVDLDAIEQEISKQCQSLPRGEFASKALGHSFMV-------------FARDMLEG 315
+ + +I E+ + ++ AL H +V L+
Sbjct: 426 ------ISIPSIYLELKVKLENEY-------AL-HRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 316 ISFSNL-YAPEHLIVNVKDAEKWESIIENAGSVFLG-EWTPESV---GDYASGTNHVLPT 370
+S++ + HL N++ E+ VFL + + + + + +L T
Sbjct: 472 YFYSHIGH---HLK-NIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 371 YGYARMYGGVSLDSFLKYMTVQSLT-EEGLKKLGPYVATMAEIEGLEAHKRAVTFRLQD- 428
+ Y Y+ E + + ++ + E + + L
Sbjct: 524 LQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 429 -----IEA-RQV 434
EA +QV
Sbjct: 576 DEAIFEEAHKQV 587
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 33.2 bits (76), Expect = 0.024
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 351 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 410
+W+P V D+ G + L Y +S D L +T Q L + G+ ++G +
Sbjct: 6 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQ-LLRITHQELEDLGVSRIGHQELILE 64
Query: 411 EIEGLEAHKRAVTFRLQ 427
++ L A+ + L+
Sbjct: 65 AVDLL----CALNYGLE 77
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 32.4 bits (74), Expect = 0.042
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 345 GSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGP 404
GS + +W+P V D+ G + L Y +S D L+ +T Q L + G+ ++G
Sbjct: 4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLR-ITHQELEDLGVSRIGH 62
Query: 405 YVATMAEIEGL 415
+ ++ L
Sbjct: 63 QELILEAVDLL 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.12
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 112 KRVARSI-GSVGLYVPGGTAVLPSTALMLSVPAQI 145
K+ + + S+ LY +A P+ L++ A +
Sbjct: 19 KQALKKLQASLKLYAD-DSA--PA----LAIKATM 46
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 11/29 (37%)
Query: 396 EEGLKKL-----------GPYVATMAEIE 413
++ LKKL P +A A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 4.3
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 313 LEGISFSNLYAPEH---LIVN 330
L+ S LYA + L +
Sbjct: 25 LQA-SL-KLYADDSAPALAIK 43
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 29.8 bits (67), Expect = 0.40
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 351 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 410
WTP V + G + L Y + + L+ + QSL ++ LG +
Sbjct: 13 TWTPGKVATWLRGLDDSL--QDYPFEDWQLPGKNLLQ-LCPQSLEALAVRSLGHQELILG 69
Query: 411 EIEGLEAHKRAVTFRLQ 427
+E L +A++ RLQ
Sbjct: 70 GVEQL----QALSSRLQ 82
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 29.5 bits (66), Expect = 0.57
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 351 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEE-GLKKLGPYVATM 409
+WT E V Y ++ L +G + + L + + + + GL KLGP +
Sbjct: 16 DWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALL-RLNSERMMKYMGL-KLGPALKIC 73
Query: 410 AEIEGLEAHKRA 421
+ +
Sbjct: 74 NLVNKVNGRDHH 85
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 28.6 bits (63), Expect = 3.7
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 230 MPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGD 273
M P +VL I + + AE PD +LV+VG+
Sbjct: 1 MGIMPRKVLAIKNFKERFDLLPKLKGVIAEKQPD---ILVVVGN 41
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli}
SCOP: a.174.1.1
Length = 148
Score = 27.6 bits (62), Expect = 4.4
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 247 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 293
P+H+ + LL+Q V ++ G++ + +I++ LP+
Sbjct: 31 PLHLMSALLNQ----EGGSVSPLLTSAGINAGQLRTDINQALNRLPQ 73
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 28.5 bits (64), Expect = 5.8
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 224 AMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGP---DSQVVLVIVGDGVDLDAI 280
+ I++ + D+ + LS +VV +++ D V +
Sbjct: 560 KNLGIELTDDQLNITPPPDVNGLKKDPS---LSLYAIPDGDVKGRVVAILLNDEVRSADL 616
Query: 281 EQ 282
Sbjct: 617 LA 618
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.3 bits (64), Expect = 6.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 247 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 293
H+ A LL S ++ G D A+++ ++ LP+
Sbjct: 31 LPHLWAVLLKD----ERSLAWRLLEKAGADPKALKELQERELARLPK 73
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 28.1 bits (63), Expect = 6.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 145 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVT 177
A +VLA P + S+ V A G T
Sbjct: 66 AAEDALIVLAVPMTAIDSLLDAVHTHAPNNGFT 98
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 27.3 bits (61), Expect = 8.8
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 140 SVPAQIAGCKTVVLATPPSQDGSI-------CKEVLYCAKKAGVTHILKAGGA 185
V +AG V++ D S + ++ K GV ++ A
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,684,559
Number of extensions: 418627
Number of successful extensions: 1239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 32
Length of query: 438
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 342
Effective length of database: 4,021,377
Effective search space: 1375310934
Effective search space used: 1375310934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)