BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013680
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATXQEL 115
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 116 SIT-------------------------YGT--GSMTGILGYDTVQVGGIS--------D 140
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 141 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 258
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 259 DTGTSLLTGPTSAIANI 275
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 99/257 (38%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 115
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 116 SIT-------------------------YGT--GSMTGILGYDTVQVGGIS--------D 140
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 141 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 258
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 259 DTGTSLLTGPTSAIANI 275
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 191 PCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAP 250
PC ++G L + + P S V V+ C + + L +
Sbjct: 81 PCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGS- 139
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQG---PATQQSTSFLPI 307
GV GL +++PS +A A + N F +C G FG P QS + P+
Sbjct: 140 TGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPL 199
Query: 308 GEK--YDAYFVGVESYCIGNSCLTQSGFQALVDSGA------SFTFLPTEIYAEVVVKFD 359
K A+++ S + N+ + S +AL G + L ++Y +V F
Sbjct: 200 VAKGGSPAHYISARSIKVENTRVPIS-ERALATGGVMLSTRLPYVLLRRDVYRPLVDAFT 258
Query: 360 KLVSSK 365
K ++++
Sbjct: 259 KALAAQ 264
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 101/257 (39%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ + + +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPS--VYCSSLACTNHNRFNPE------------ 59
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
D Y ST +T S Y + + +
Sbjct: 60 --------------------DSSTY---QSTSETVSITYGTGSMTGILGYDTVQVGGISD 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S V + GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 283 END-SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALV 337
+D SGSV F G S +++P+ + Y+ + V+S + G + G QA+V
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 215 DTGTSLLTGPTSPIANI 231
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 101/257 (39%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ + + +
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPS--VYCSSLACTNHNRFNPE------------ 59
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
D Y ST +T S Y + + +
Sbjct: 60 --------------------DSSTY---QSTSETVSITYGTGSMTGILGYDTVQVGGISD 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S V + GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 283 END-SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALV 337
+D SGSV F G S +++P+ + Y+ + V+S + G + G QA+V
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 215 DTGTSLLTGPTSPIANI 231
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 119/306 (38%), Gaps = 71/306 (23%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDHE------------ 60
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS---KHAPQS 226
+ + Y T S GY+ D L + + + ++
Sbjct: 61 -------------ASSSYKANGTEFAIQYGT--GSLEGYISQDTLSIGDLTIPKQDFAEA 105
Query: 227 SVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL-------LAKAGLIQNSFSI 279
+ + + G+ DG++GLG +SV + + + L + F+
Sbjct: 106 TSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAF 154
Query: 280 CFD------ENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSG 332
EN + F G + ++LP+ K AY+ V E +G+
Sbjct: 155 YLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELES 212
Query: 333 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMR 392
A +D+G S LP+ + ++++++ + +G++ +Y + ++ + L PD
Sbjct: 213 HGAAIDTGTSLITLPSGLA--------EMINAEIGAKKGSTGQYTLDCNTRDNL--PD-- 260
Query: 393 LIFSKN 398
LIF+ N
Sbjct: 261 LIFNFN 266
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 251 DGVMGLGLGDVSVP---SLLAKAGLIQNSFSICF----DENDSGSVFFGDQGPAT-QQST 302
DG++GL +SVP ++L + + + FS DE + G + FG P +
Sbjct: 120 DGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 303 SFLPIGEKYDAYFVGVESYCIGN--SCLTQSGFQALVDSGASFTFLPTEIYAEV 354
+++P+ +Y F G+ IG+ + G QA DSG S PT I ++
Sbjct: 180 TYVPVTYQYYWQF-GIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP-CQCIQCAPLSA-SYYTSLD 155
++ I IGTP F V D GS++LWVP +CI A S Y S D
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSD 62
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 99/257 (38%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATSQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 215 DTGTSLLTGPTSAIANI 231
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 69/266 (25%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
++ I IGTP F V D GS+ LWVP C + C+ P +S + + + L
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSI 73
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
Y T S +G L D + + S
Sbjct: 74 T------------------------------------YGTG--SMTGILGYDTVQVGGIS 95
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI- 273
++ I G + GS+L A DG++GL +S L GL+
Sbjct: 96 D--------TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVS 147
Query: 274 QNSFSICFDEN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCL 328
Q+ FS+ N DSGSV G S +++P+ E Y + + ++S + G +
Sbjct: 148 QDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIA 205
Query: 329 TQSGFQALVDSGASFTFLPTEIYAEV 354
G QA+VD+G S PT A +
Sbjct: 206 CSGGCQAIVDTGTSLLTGPTSAIANI 231
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 69/266 (25%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
++ I IGTP F V D GS+ LWVP C + C+ P +S + + + L
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSI 73
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
Y T S +G L D + + S
Sbjct: 74 T------------------------------------YGTG--SMTGILGYDTVQVGGIS 95
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI- 273
++ I G + GS+L A DG++GL +S L GL+
Sbjct: 96 D--------TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVS 147
Query: 274 QNSFSICFDEN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCL 328
Q+ FS+ N DSGSV G S +++P+ E Y + + ++S + G +
Sbjct: 148 QDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIA 205
Query: 329 TQSGFQALVDSGASFTFLPTEIYAEV 354
G QA+VD+G S PT A +
Sbjct: 206 CSGGCQAIVDTGTSLLTGPTSAIANI 231
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLXXXXXXXXXXX 169
++ I IGTP F V D GS+ LWVP + C+ L+ S + + +
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPDDSSTFEATXQEL 71
Query: 170 XXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQ 229
Y T S +G L D + + S
Sbjct: 72 SIT-------------------------YGTG--SMTGILGYDTVQVGGISD-------- 96
Query: 230 SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFD 282
++ I G + GS+L A DG++GL +S L GL+ Q+ FS+
Sbjct: 97 TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 283 EN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALV 337
N DSGSV G S +++P+ E Y + + ++S + G + G QA+V
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIV 214
Query: 338 DSGASFTFLPTEIYAEV 354
D+G S PT A +
Sbjct: 215 DTGTSLLTGPTSAIANI 231
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 69/266 (25%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
++ I IGTP F V D GS+ LWVP C + C+ P +S + + + L
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATXQELSI 73
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
Y T S +G L D + + S
Sbjct: 74 T------------------------------------YGTG--SMTGILGYDTVQVGGIS 95
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI- 273
++ I G + GS+L A DG++GL +S L GL+
Sbjct: 96 D--------TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVS 147
Query: 274 QNSFSICFDEN-DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCL 328
Q+ FS+ N DSGSV G S +++P+ E Y + + ++S + G +
Sbjct: 148 QDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIA 205
Query: 329 TQSGFQALVDSGASFTFLPTEIYAEV 354
G QA+VD+G S PT A +
Sbjct: 206 CSGGCQAIVDTGTSLLTGPTSAIANI 231
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDR 156
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDH 59
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDR 156
+YT I +GTP +F V LD GS+ LWVP +C L+ ++ D
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYDH 59
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQC 143
++ I IGTP +FLV D GS+ LWVP CQ C
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQAC 50
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 235 GCGRKQTGSYLDGAAPDGVMGLGLGDVSV-PSLLAKAGLIQNS------FSICFDENDS- 286
G + G+ A DG+MGL +SV + A G++Q FS+
Sbjct: 102 GLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGS 161
Query: 287 --GSVFFG--DQGPATQQSTSFLPIGEKYDAYFVGVESYCIGN--SCLTQSGFQALVDSG 340
G+V FG D T Q + P+ ++ + +G+E + IG S G QA+VD+G
Sbjct: 162 SGGAVVFGGVDSSLYTGQ-IYWAPVTQEL-YWQIGIEEFLIGGQASGWCSEGCQAIVDTG 219
Query: 341 ASFTFLPTE 349
S +P +
Sbjct: 220 TSLLTVPQQ 228
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 78/264 (29%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSASYYTSLDRNLXX 160
++ I IGTP F V D GS+ LWVP C+ C P +S + +L +
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGK---- 68
Query: 161 XXXXXXXXXXXXXXXHPXXXXXXXXXXXXDPCPYIADYSTEDTSSSGYLVDDILHLASFS 220
P Y T S G+L D + +++
Sbjct: 69 --------------------------------PLSIHYGT--GSMEGFLGYDTVTVSNI- 93
Query: 221 KHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL----GDVSVP---SLLAKAGLI 273
V + +G +Q G + DG++GL + SVP +++ + +
Sbjct: 94 -------VDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVA 146
Query: 274 QNSFSICFDENDSGSVF-FGDQGPAT-QQSTSFLPIG-EKYDAYFV------GVESYCIG 324
++ FS+ D N GS+ G P+ S ++P+ ++Y + V GV C+G
Sbjct: 147 RDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVG 206
Query: 325 NSCLTQSGFQALVDSGASFTFLPT 348
G QA++D+G S F P+
Sbjct: 207 -------GCQAILDTGTSVLFGPS 223
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 224 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 283
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 284 NDSGSVFFGDQG---PATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 331
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKR 366
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQH 263
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 224 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 283
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 284 NDSGSVFFGDQG---PATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 331
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKR 366
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQH 263
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 245 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 297
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 298 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 355
Query: 356 VKFD 359
D
Sbjct: 356 QNLD 359
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 251 DGVMGLGLGDVSVPS-------LLAKAGLIQNSFSICFDEND---SGSVFFGDQGPATQQ 300
DGV+G+G +V +L++ L + FS+ ++ G V G P Q
Sbjct: 122 DGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQ 181
Query: 301 STSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVDSGASFTFLPT 348
K D++ + ++ +G+S L + G + +VD+G+SF PT
Sbjct: 182 GDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT 230
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
+Y I IGTP +F V D GS LWVP
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVP 44
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGD 293
GV GLG +S+P+ LA +Q F+ C G++ FGD
Sbjct: 156 QGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD 200
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 172 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 224
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 225 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 282
Query: 356 VKFD 359
D
Sbjct: 283 QNLD 286
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 54
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 97
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 51
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 50
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 47
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 54
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 54
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 356 VKFD 359
D
Sbjct: 232 QNLD 235
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 356 VKFD 359
D
Sbjct: 234 QNLD 237
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPL 146
+Y I IGTP +F V D GS+ +WVP +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL 54
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 356 VKFD 359
D
Sbjct: 232 QNLD 235
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 311 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 356 VKFD 359
D
Sbjct: 234 QNLD 237
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
+Y I IGTP F V D GS+ LWVP
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVP 42
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWV 136
+Y I IGTP SF V D GS+ LWV
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWV 40
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
++ I +GTP F V D GS+ LWVP
Sbjct: 54 YFGEIGVGTPPQKFTVIFDTGSSNLWVP 81
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASY 150
+Y + IGTP F + D GS+ LW+ C C Y
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTKY 58
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 42/184 (22%)
Query: 252 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 301
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 302 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 342
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 343 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 391
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 392 RLIF 395
L+
Sbjct: 331 DLVL 334
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVP 137
++ I IG+P +F V D GS+ LWVP
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVP 52
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 42/184 (22%)
Query: 252 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 301
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 302 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 342
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 343 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 391
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 392 RLIF 395
L+
Sbjct: 331 DLVL 334
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQCIQCAP 145
I +G+ N V +D GS+ LW+P + C P
Sbjct: 18 ITVGSDNQKLNVIVDTGSSDLWIPDSNVICIP 49
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 262 SVPSLLAKAGLI-QNSFSICFDENDS--GSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 317
+VP L K G+I +N++S+ + DS G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFD 359
+ S + + L+DSG + T+L ++ +++ F+
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFN 239
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASY 150
+Y + IGTP F + D GS+ LW+ C C Y
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKY 58
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVP 137
+ IGTP FL+ D GS+ WVP
Sbjct: 24 VSIGTPGQDFLLLFDTGSSDTWVP 47
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 262 SVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 317
+VP L K G+I +N++S+ + D +G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFD 359
+ S + + L+DSG + T+L ++ +++ F+
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFN 239
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 297 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 276 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 331
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQCIQC 143
I IG+ F V +D GS+ LWVP + C
Sbjct: 18 ITIGSNKQKFNVIVDTGSSDLWVPDASVTC 47
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 297 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 289 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 344
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQ-------CIQCA---PLSASYYTSLDRNL 158
+ IGTP F + D GS+ WVP + C+ P S+S + D NL
Sbjct: 24 VSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNL 78
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSAS 149
T++ +Q++ Y +GTP F V D GS+ WVP C+ C P +S
Sbjct: 9 TNYLDSQYFGKIY----LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
Query: 150 YYTSLDRNL 158
+ +L + L
Sbjct: 65 TFQNLGKPL 73
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVP---CQCIQCA------PLSAS 149
T++ +Q++ Y +GTP F V D GS+ WVP C+ C P +S
Sbjct: 9 TNYLDSQYFGKIY----LGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
Query: 150 YYTSLDRNL 158
+ +L + L
Sbjct: 65 TFQNLGKPL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,922,904
Number of Sequences: 62578
Number of extensions: 448969
Number of successful extensions: 1136
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 111
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)