Query 013680
Match_columns 438
No_of_seqs 293 out of 1527
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.3E-59 2.8E-64 480.1 39.0 383 4-437 4-408 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.4E-51 7.5E-56 415.5 33.8 313 102-436 39-367 (398)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 5.5E-47 1.2E-51 375.3 30.7 274 104-425 1-288 (325)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.6E-46 3.6E-51 370.7 31.0 274 101-427 2-286 (317)
5 cd05485 Cathepsin_D_like Cathe 100.0 2.5E-46 5.5E-51 371.0 29.9 277 101-425 3-292 (329)
6 cd05489 xylanase_inhibitor_I_l 100.0 5.7E-46 1.2E-50 371.7 29.9 284 116-428 2-329 (362)
7 cd05488 Proteinase_A_fungi Fun 100.0 7.1E-46 1.5E-50 366.6 29.8 273 101-426 2-284 (320)
8 PTZ00165 aspartyl protease; Pr 100.0 9.6E-46 2.1E-50 380.3 30.3 278 96-425 107-408 (482)
9 cd06098 phytepsin Phytepsin, a 100.0 1.6E-45 3.4E-50 363.6 29.9 264 101-425 2-280 (317)
10 cd05486 Cathespin_E Cathepsin 100.0 1.8E-45 3.8E-50 363.2 29.3 266 110-425 1-279 (316)
11 cd05477 gastricsin Gastricsins 100.0 3.1E-45 6.7E-50 361.7 30.7 265 107-424 1-278 (318)
12 cd05487 renin_like Renin stimu 100.0 6.4E-45 1.4E-49 360.7 30.2 273 103-425 2-288 (326)
13 cd06096 Plasmepsin_5 Plasmepsi 100.0 5.1E-45 1.1E-49 361.3 29.1 268 109-426 3-292 (326)
14 cd05472 cnd41_like Chloroplast 100.0 2.5E-44 5.5E-49 352.2 28.3 254 109-427 1-265 (299)
15 PTZ00147 plasmepsin-1; Provisi 100.0 5.5E-43 1.2E-47 357.3 31.9 277 96-425 126-414 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.1E-42 1.5E-46 348.5 31.9 288 96-436 125-424 (450)
17 cd05475 nucellin_like Nucellin 100.0 5.3E-42 1.1E-46 331.5 28.2 228 109-427 2-237 (273)
18 cd05473 beta_secretase_like Be 100.0 7.4E-42 1.6E-46 343.7 28.3 291 108-438 2-328 (364)
19 cd06097 Aspergillopepsin_like 100.0 2.4E-40 5.3E-45 320.8 25.7 239 110-395 1-251 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 3.7E-39 8E-44 310.3 24.8 215 109-427 1-232 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 6.4E-39 1.4E-43 315.8 21.0 268 109-426 1-281 (317)
22 cd05471 pepsin_like Pepsin-lik 100.0 8.6E-38 1.9E-42 302.5 26.6 240 110-395 1-256 (283)
23 cd05474 SAP_like SAPs, pepsin- 100.0 1.8E-37 3.9E-42 303.0 26.0 237 109-427 2-265 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.4E-32 3E-37 245.2 14.3 157 110-293 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 7.6E-23 1.6E-27 169.9 12.8 107 112-256 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.8 1.8E-18 4E-23 153.9 12.1 112 313-426 1-128 (161)
27 cd05483 retropepsin_like_bacte 97.5 0.00057 1.2E-08 54.4 7.8 92 109-258 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 94.8 0.38 8.2E-06 40.4 10.3 35 102-138 4-38 (121)
29 PF13650 Asp_protease_2: Aspar 93.3 0.73 1.6E-05 35.6 8.6 24 113-138 2-25 (90)
30 cd05479 RP_DDI RP_DDI; retrope 92.3 1.5 3.2E-05 36.9 9.7 30 108-139 15-44 (124)
31 cd05484 retropepsin_like_LTR_2 89.9 0.41 8.9E-06 37.8 3.8 27 110-138 1-27 (91)
32 PF11925 DUF3443: Protein of u 82.3 18 0.0004 36.1 11.3 23 196-220 82-104 (370)
33 PF13650 Asp_protease_2: Aspar 82.1 1.6 3.4E-05 33.7 3.3 29 321-354 3-31 (90)
34 cd05484 retropepsin_like_LTR_2 79.7 2.3 5.1E-05 33.4 3.5 30 320-354 4-33 (91)
35 TIGR02281 clan_AA_DTGA clan AA 79.6 4 8.6E-05 34.2 5.1 35 312-354 10-44 (121)
36 PF13975 gag-asp_proteas: gag- 79.2 3.2 6.9E-05 31.2 4.0 29 321-354 13-41 (72)
37 PF13975 gag-asp_proteas: gag- 78.0 4.3 9.3E-05 30.5 4.4 31 107-139 6-36 (72)
38 PF00077 RVP: Retroviral aspar 76.9 4.1 8.8E-05 32.4 4.2 26 111-138 7-32 (100)
39 cd05483 retropepsin_like_bacte 72.7 5.9 0.00013 30.7 4.2 30 320-354 6-35 (96)
40 cd05482 HIV_retropepsin_like R 68.3 7.5 0.00016 30.6 3.7 23 114-138 3-25 (87)
41 cd06095 RP_RTVL_H_like Retrope 61.6 9.2 0.0002 29.7 3.1 29 321-354 3-31 (86)
42 cd05479 RP_DDI RP_DDI; retrope 61.4 10 0.00022 31.7 3.6 28 321-353 21-48 (124)
43 PF00077 RVP: Retroviral aspar 58.1 6.9 0.00015 31.0 1.9 26 320-350 9-34 (100)
44 cd06095 RP_RTVL_H_like Retrope 56.1 16 0.00034 28.4 3.6 19 120-138 7-25 (86)
45 cd05481 retropepsin_like_LTR_1 52.0 16 0.00035 29.0 3.0 31 321-355 3-33 (93)
46 PF09668 Asp_protease: Asparty 48.4 20 0.00044 30.2 3.2 29 321-354 29-57 (124)
47 COG3577 Predicted aspartyl pro 43.7 62 0.0013 29.7 5.7 32 311-350 103-134 (215)
48 PF09668 Asp_protease: Asparty 42.6 21 0.00045 30.1 2.4 34 109-144 24-58 (124)
49 COG3577 Predicted aspartyl pro 35.6 87 0.0019 28.8 5.4 85 93-219 89-173 (215)
50 COG5550 Predicted aspartyl pro 35.2 23 0.00051 29.6 1.6 20 335-354 29-49 (125)
51 PF12384 Peptidase_A2B: Ty3 tr 34.9 47 0.001 29.4 3.5 28 111-138 34-61 (177)
52 TIGR03698 clan_AA_DTGF clan AA 33.3 28 0.00061 28.3 1.8 22 333-354 17-39 (107)
53 PF08284 RVP_2: Retroviral asp 28.8 64 0.0014 27.5 3.3 17 334-350 34-50 (135)
54 PF12384 Peptidase_A2B: Ty3 tr 26.7 3.5E+02 0.0075 24.1 7.4 23 332-354 45-67 (177)
55 TIGR03698 clan_AA_DTGF clan AA 25.2 96 0.0021 25.2 3.6 27 112-138 2-33 (107)
56 cd00303 retropepsin_like Retro 22.0 1.4E+02 0.0031 21.1 3.9 20 334-353 11-30 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.3e-59 Score=480.11 Aligned_cols=383 Identities=24% Similarity=0.425 Sum_probs=283.5
Q ss_pred HHHHHHHHHHH-hhcccccccceEEEEEecChhhhhhhhccCCCCccCCCCCCCCcHHHHHHHhhcchhhHHHhhhhccC
Q 013680 4 LVAICMLFGCI-LLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSN 82 (438)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (438)
|++++|+...+ ....+...+++++|+||+++++|++. +.....+..+++++++.+|.++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~-------------~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 68 (431)
T PLN03146 4 LLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYN-------------PSETPSQRLRNAFRRSISRVNHFRPTD-- 68 (431)
T ss_pred hHHHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCC-------------CCCChhHHHHHHHHHHHHHHHHHhhcc--
Confidence 44444444422 23445678899999999999998752 122234556666666656554432200
Q ss_pred CCCCCccccccCCCCceeeecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCC
Q 013680 83 NNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY 161 (438)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f 161 (438)
... .+.. .++ ...+..|+++|.||||||++.|++||||+++||+|. |..|..+. ++.|
T Consensus 69 ---~~~---~~~~----~~~-~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~f 127 (431)
T PLN03146 69 ---ASP---NDPQ----SDL-ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLF 127 (431)
T ss_pred ---ccC---Cccc----cCc-ccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcc
Confidence 000 0111 011 122457999999999999999999999999999998 88887653 5899
Q ss_pred CCCCCCCCccccCCCcCCCCCC---CCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEE
Q 013680 162 DPSSSSSSKNVSCSHPLCKSRS---SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGR 238 (438)
Q Consensus 162 ~p~~SsT~~~~~C~~~~C~~~~---~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~ 238 (438)
||++|+||+.++|+++.|+... .|..+ +.|.|.+.|+|| +.+.|.+++|+|+|++..+. ...++++.|||++
T Consensus 128 dps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~ 202 (431)
T PLN03146 128 DPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGH 202 (431)
T ss_pred cCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCC---cceeCCEEEeCCC
Confidence 9999999999999999998632 37554 469999999996 67789999999999875321 1346899999999
Q ss_pred eccCCCCCCCCCceEeecCCCCCChhHHHHhhcCCcCcEEEEecC-----CCCceEEeCcCCCCC---ceeeeeeecCCC
Q 013680 239 KQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE-----NDSGSVFFGDQGPAT---QQSTSFLPIGEK 310 (438)
Q Consensus 239 ~~~g~~~~~~~~dGIlGLg~~~~S~~~qL~~~g~i~~~FS~cL~~-----~~~G~l~fG~~d~~~---~~~~p~v~~~~~ 310 (438)
.+.|.|.. ..+||||||++++|+++||... +.++|||||.+ ...|.|+||+..... ..+||++....
T Consensus 203 ~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~- 277 (431)
T PLN03146 203 NNGGTFDE--KGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP- 277 (431)
T ss_pred CCCCCccC--CCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-
Confidence 98876532 4699999999999999998753 56699999964 136999999853221 34677765433
Q ss_pred CccEEEeEeeEEecCeEeecCC--------cceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeeccc
Q 013680 311 YDAYFVGVESYCIGNSCLTQSG--------FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASS 382 (438)
Q Consensus 311 ~~~y~v~l~~i~vg~~~~~~~~--------~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~ 382 (438)
..+|+|+|++|+||++.+.... ..+||||||++|+||+++|++|+++|.++++..+.......++.||....
T Consensus 278 ~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 357 (431)
T PLN03146 278 DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS 357 (431)
T ss_pred CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC
Confidence 3799999999999999875322 36999999999999999999999999999976554333345678997542
Q ss_pred ccccCCCeEEEEEcCCcEEEEecceeEEeeCCCCceEEEEEEEcCC-CceeEEEee
Q 013680 383 EEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEVGDHACFSYFTLEY-NFTGILILQ 437 (438)
Q Consensus 383 ~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl~~~~~~~-~~~g~~il~ 437 (438)
. ..+|+|+|+| +|+++.|++++|++...+ +.+|++++...+ ...|.+.+|
T Consensus 358 ~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~~~~~IlG~~~q~ 408 (431)
T PLN03146 358 D--IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPTSSIAIFGNLAQM 408 (431)
T ss_pred C--CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecCCCceEECeeeEe
Confidence 2 4789999999 588999999999988654 568999887532 344555555
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-51 Score=415.46 Aligned_cols=313 Identities=33% Similarity=0.573 Sum_probs=248.1
Q ss_pred ecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecC-CC-CCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 013680 102 FGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI-QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (438)
Q Consensus 102 l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~-~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C 179 (438)
+..+.+.+||++|.||||||.|.|++||||+++||+|. |. .|..+. .+.|+|++|+||+.+.|+++.|
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c 108 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRC 108 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCccc
Confidence 34455668999999999999999999999999999997 87 676542 2459999999999999999999
Q ss_pred CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCC-CCCceEeecCC
Q 013680 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDG-AAPDGVMGLGL 258 (438)
Q Consensus 180 ~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~-~~~dGIlGLg~ 258 (438)
.....|..+++.|+|.+.|+|+ ++++|.+++|+|+|++.+ ....+++.|||+..+.|. +.. .+.|||||||+
T Consensus 109 ~~~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~ 181 (398)
T KOG1339|consen 109 KSLPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGR 181 (398)
T ss_pred cccccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccccccceEeecCC
Confidence 9976655556789999999995 589999999999999842 124578999999999886 333 57899999999
Q ss_pred CCCChhHHHHhhcCCcCcEEEEecCC-----CCceEEeCcCCCCCc-eeeeeeecCCCC-ccEEEeEeeEEecCeE----
Q 013680 259 GDVSVPSLLAKAGLIQNSFSICFDEN-----DSGSVFFGDQGPATQ-QSTSFLPIGEKY-DAYFVGVESYCIGNSC---- 327 (438)
Q Consensus 259 ~~~S~~~qL~~~g~i~~~FS~cL~~~-----~~G~l~fG~~d~~~~-~~~p~v~~~~~~-~~y~v~l~~i~vg~~~---- 327 (438)
+++|+++|+.......++|||||.++ .+|.|.||+.|+... +.+.|+|+.... .+|+|++++|+||++.
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGS 261 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCc
Confidence 99999999887766666999999876 369999999999874 545555555542 3999999999999843
Q ss_pred --eecCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEec
Q 013680 328 --LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRN 405 (438)
Q Consensus 328 --~~~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~ 405 (438)
......++||||||++|+||+++|++|.++|...+.. ......++..||...... ..+|.|+|+|.+|+.|.+++
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 2223578999999999999999999999999876511 111123345777655432 34899999996689999999
Q ss_pred ceeEEeeCCCCceEEEEEEEcCCCceeEEEe
Q 013680 406 HIFSFPENEVGDHACFSYFTLEYNFTGILIL 436 (438)
Q Consensus 406 ~~y~~~~~~~~~~~Cl~~~~~~~~~~g~~il 436 (438)
++|+++..++... |++++...+.. ..|||
T Consensus 339 ~~y~~~~~~~~~~-Cl~~~~~~~~~-~~~il 367 (398)
T KOG1339|consen 339 KNYLVEVSDGGGV-CLAFFNGMDSG-PLWIL 367 (398)
T ss_pred cceEEEECCCCCc-eeeEEecCCCC-ceEEE
Confidence 9999988653122 99998865443 34443
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.5e-47 Score=375.34 Aligned_cols=274 Identities=23% Similarity=0.384 Sum_probs=221.8
Q ss_pred ccccceEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCC
Q 013680 104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR 182 (438)
Q Consensus 104 ~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~ 182 (438)
|+.+.+||++|.||||+|+|.|++||||+++||+|. |..|. .. |..++.|+|++|+|++.
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~-------C~~~~~y~~~~SsT~~~----------- 61 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IA-------CWLHHKYNSSKSSTYVK----------- 61 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-cc-------ccCcCcCCcccCcceee-----------
Confidence 466889999999999999999999999999999995 54321 12 22467899999999987
Q ss_pred CCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCC
Q 013680 183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS 262 (438)
Q Consensus 183 ~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S 262 (438)
..|.|.+.|++| ++.|.+++|+|+|++. .++++.|||++.+.+..+.....|||||||++.++
T Consensus 62 -------~~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 62 -------NGTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred -------CCcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 248999999997 6799999999999875 46789999999887754443467999999998776
Q ss_pred h------hHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCeEee-
Q 013680 263 V------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNSCLT- 329 (438)
Q Consensus 263 ~------~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~- 329 (438)
. ..+|+++|++ +++||+||.++ .+|.|+||++|+.+. +++.|+++... .+|.|++++|+||++...
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~ 203 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-AYWQIHMDQVDVGSGLTLC 203 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-eEEEEEeeEEEECCeeeec
Confidence 4 3478999998 79999999864 369999999998764 68888887664 799999999999987543
Q ss_pred cCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeE
Q 013680 330 QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFS 409 (438)
Q Consensus 330 ~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~ 409 (438)
.....+||||||+++++|+++|++|.+++.. .... ..+|.++|+....+|+|+|+| ||+.|.|++++|+
T Consensus 204 ~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----~~~~------~~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~ 272 (325)
T cd05490 204 KGGCEAIVDTGTSLITGPVEEVRALQKAIGA----VPLI------QGEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYI 272 (325)
T ss_pred CCCCEEEECCCCccccCCHHHHHHHHHHhCC----cccc------CCCEEecccccccCCCEEEEE-CCEEEEEChHHeE
Confidence 3456899999999999999998888766532 2111 124788998777899999999 8899999999999
Q ss_pred EeeCCCCceEEEEEEE
Q 013680 410 FPENEVGDHACFSYFT 425 (438)
Q Consensus 410 ~~~~~~~~~~Cl~~~~ 425 (438)
++........|++.+.
T Consensus 273 ~~~~~~~~~~C~~~~~ 288 (325)
T cd05490 273 LKVSQRGTTICLSGFM 288 (325)
T ss_pred EeccCCCCCEEeeEEE
Confidence 9764333468997654
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.6e-46 Score=370.65 Aligned_cols=274 Identities=24% Similarity=0.415 Sum_probs=227.2
Q ss_pred eecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCC
Q 013680 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK 180 (438)
Q Consensus 101 ~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 180 (438)
+|.|+.+.+||++|.||||+|++.|++||||+++||+|. .|....| ..++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~--~C~~~~c-------~~~~~f~~~~Sst~~~~-------- 64 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV--YCSSQAC-------SNHNRFNPRQSSTYQST-------- 64 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC--CCCcccc-------cccCcCCCCCCcceeeC--------
Confidence 578889999999999999999999999999999999995 4433233 23689999999999984
Q ss_pred CCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCC
Q 013680 181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD 260 (438)
Q Consensus 181 ~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~ 260 (438)
.+.|++.|++| ++.|.+++|+|+|++. .++++.|||++...+.+......|||||||+..
T Consensus 65 ----------~~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 124 (317)
T cd05478 65 ----------GQPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPS 124 (317)
T ss_pred ----------CcEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccch
Confidence 48999999997 5799999999999875 467899999998877655444579999999876
Q ss_pred CC------hhHHHHhhcCC-cCcEEEEecCCC--CceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEecCeEeec
Q 013680 261 VS------VPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ 330 (438)
Q Consensus 261 ~S------~~~qL~~~g~i-~~~FS~cL~~~~--~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~~ 330 (438)
++ +..+|+++|+| +++||+||.++. .|.|.||++|+.+ .+++.|+++... .+|.|.+++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-TYWQITVDSVTINGQVVAC 203 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-cEEEEEeeEEEECCEEEcc
Confidence 54 56789999999 799999999863 6899999999876 468888888764 8999999999999998853
Q ss_pred -CCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeE
Q 013680 331 -SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFS 409 (438)
Q Consensus 331 -~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~ 409 (438)
....+||||||++++||+++|++|.+++. ..... ..+|.++|+....+|.|+|+| +|+.|.|++++|+
T Consensus 204 ~~~~~~iiDTGts~~~lp~~~~~~l~~~~~----~~~~~------~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~ 272 (317)
T cd05478 204 SGGCQAIVDTGTSLLVGPSSDIANIQSDIG----ASQNQ------NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYI 272 (317)
T ss_pred CCCCEEEECCCchhhhCCHHHHHHHHHHhC----Ccccc------CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHhe
Confidence 35689999999999999999988876653 22111 234888998767899999999 7899999999999
Q ss_pred EeeCCCCceEEEEEEEcC
Q 013680 410 FPENEVGDHACFSYFTLE 427 (438)
Q Consensus 410 ~~~~~~~~~~Cl~~~~~~ 427 (438)
+.. ..+|+..+...
T Consensus 273 ~~~----~~~C~~~~~~~ 286 (317)
T cd05478 273 LQD----QGSCTSGFQSM 286 (317)
T ss_pred ecC----CCEEeEEEEeC
Confidence 875 35899866643
No 5
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.5e-46 Score=371.02 Aligned_cols=277 Identities=24% Similarity=0.423 Sum_probs=227.3
Q ss_pred eecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 013680 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (438)
Q Consensus 101 ~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C 179 (438)
+|.|+.+.+|+++|.||||+|++.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++..
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c-------~~~~~y~~~~Sst~~~~------- 67 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN-IAC-------LLHNKYDSTKSSTYKKN------- 67 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC-ccc-------cCCCeECCcCCCCeEEC-------
Confidence 577899999999999999999999999999999999996 65332 122 23578999999999973
Q ss_pred CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCC
Q 013680 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (438)
Q Consensus 180 ~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (438)
.|.|.+.|++| ++.|.+++|+++|++. ..+++.|||+.++.+..+.....+||||||++
T Consensus 68 -----------~~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (329)
T cd05485 68 -----------GTEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYS 126 (329)
T ss_pred -----------CeEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCc
Confidence 58999999997 5899999999999875 45789999998887643434467999999998
Q ss_pred CCCh------hHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCeE
Q 013680 260 DVSV------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (438)
Q Consensus 260 ~~S~------~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~~ 327 (438)
.++. ..+|+++|+| +++||+||.++ ..|.|+||++|+.+. +++.|+|+... .+|.|.+++|+|+++.
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~~~v~~~~i~v~~~~ 205 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-GYWQFKMDSVSVGEGE 205 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-eEEEEEeeEEEECCee
Confidence 7764 4678999999 79999999864 359999999998764 67888887654 8999999999999998
Q ss_pred eecCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecce
Q 013680 328 LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHI 407 (438)
Q Consensus 328 ~~~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~ 407 (438)
+......+||||||++++||+++|++|.+++ +..... ..||.++|+....+|+|+|+| ||+.|.|++++
T Consensus 206 ~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~----~~~~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~ 274 (329)
T cd05485 206 FCSGGCQAIADTGTSLIAGPVDEIEKLNNAI----GAKPII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKD 274 (329)
T ss_pred ecCCCcEEEEccCCcceeCCHHHHHHHHHHh----CCcccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHH
Confidence 8756678999999999999999988877555 332221 235888998767789999999 88999999999
Q ss_pred eEEeeCCCCceEEEEEEE
Q 013680 408 FSFPENEVGDHACFSYFT 425 (438)
Q Consensus 408 y~~~~~~~~~~~Cl~~~~ 425 (438)
|+++..+....+|+..+.
T Consensus 275 yi~~~~~~~~~~C~~~~~ 292 (329)
T cd05485 275 YVLKVTQMGQTICLSGFM 292 (329)
T ss_pred eEEEecCCCCCEEeeeEE
Confidence 999875433468997544
No 6
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.7e-46 Score=371.73 Aligned_cols=284 Identities=22% Similarity=0.345 Sum_probs=218.9
Q ss_pred eCCCCeE-EEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC-----------
Q 013680 116 IGTPNVS-FLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----------- 183 (438)
Q Consensus 116 iGTP~q~-~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~----------- 183 (438)
+|||-.+ +.|++||||+++||+|. |.+|+||+.++|+++.|+...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~ 58 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGA 58 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCC
Confidence 5888888 99999999999999992 356889999999999998521
Q ss_pred ---CCCCCCCCCceeEe-cCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCC
Q 013680 184 ---SCKSLKDPCPYIAD-YSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (438)
Q Consensus 184 ---~C~~~~~~c~y~~~-Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (438)
.|.+ +.|.|... |++| +.+.|.+++|+|+|+..++.......++++.|||++++....+. ...|||||||++
T Consensus 59 ~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~ 134 (362)
T cd05489 59 PGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRS 134 (362)
T ss_pred CCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCC
Confidence 3432 35888665 7775 78899999999999865322100124689999999886432222 236999999999
Q ss_pred CCChhHHHHhhcCCcCcEEEEecCC--CCceEEeCcCCCCC----------ceeeeeeecCCCCccEEEeEeeEEecCeE
Q 013680 260 DVSVPSLLAKAGLIQNSFSICFDEN--DSGSVFFGDQGPAT----------QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (438)
Q Consensus 260 ~~S~~~qL~~~g~i~~~FS~cL~~~--~~G~l~fG~~d~~~----------~~~~p~v~~~~~~~~y~v~l~~i~vg~~~ 327 (438)
++|+++||..++..+++|||||.++ .+|.|+||+.++.+ ..++|++..+....+|+|+|++|+||++.
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~ 214 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHA 214 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEE
Confidence 9999999987766689999999864 47999999988533 24566654432347999999999999998
Q ss_pred eecC----------CcceEEcccCccccccHHHHHHHHHHHHHHhcccccccc-Cccccceeeccc----ccccCCCeEE
Q 013680 328 LTQS----------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ-GNSWKYCYNASS----EEMLKVPDMR 392 (438)
Q Consensus 328 ~~~~----------~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~----~~~~~~P~it 392 (438)
+... ...+||||||++|+||+++|++|.++|.+++...+.... ...++.||.... .....+|+|+
T Consensus 215 l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it 294 (362)
T cd05489 215 VPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAID 294 (362)
T ss_pred CCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEE
Confidence 7531 246999999999999999999999999988865433222 122379998542 2246799999
Q ss_pred EEEcC-CcEEEEecceeEEeeCCCCceEEEEEEEcCC
Q 013680 393 LIFSK-NQSFVVRNHIFSFPENEVGDHACFSYFTLEY 428 (438)
Q Consensus 393 ~~f~g-g~~~~l~~~~y~~~~~~~~~~~Cl~~~~~~~ 428 (438)
|+|+| |++|.|++++|+++..+ +.+|++++.++.
T Consensus 295 ~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~ 329 (362)
T cd05489 295 LVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGS 329 (362)
T ss_pred EEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCC
Confidence 99976 79999999999998754 578999987653
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7.1e-46 Score=366.55 Aligned_cols=273 Identities=25% Similarity=0.434 Sum_probs=225.6
Q ss_pred eecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCC
Q 013680 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK 180 (438)
Q Consensus 101 ~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 180 (438)
+|.|+.+.+||++|.||||+|++.|++||||+++||+|. .|....|. .++.|+|++|+|++.
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~C~-------~~~~y~~~~Sst~~~--------- 63 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIACF-------LHSKYDSSASSTYKA--------- 63 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCcccC-------CcceECCCCCcceee---------
Confidence 577888999999999999999999999999999999995 44433332 257899999999987
Q ss_pred CCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCC
Q 013680 181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD 260 (438)
Q Consensus 181 ~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~ 260 (438)
+.|.|.+.|++| +++|.+++|+++|++. ..+++.|||++.+.|..+.....|||||||+..
T Consensus 64 ---------~~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~ 124 (320)
T cd05488 64 ---------NGTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDT 124 (320)
T ss_pred ---------CCCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCcc
Confidence 358999999997 5899999999999875 467899999998877544444679999999988
Q ss_pred CChh------HHHHhhcCC-cCcEEEEecCC--CCceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEecCeEeec
Q 013680 261 VSVP------SLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ 330 (438)
Q Consensus 261 ~S~~------~qL~~~g~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~~ 330 (438)
.+.+ .+|+++|+| +++||+||.++ ..|.|.||++|+.+ .+++.|+|+... .+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-AYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-cEEEEEeCeEEECCEEecc
Confidence 7653 258889999 89999999874 57999999999876 467888887764 7999999999999998876
Q ss_pred CCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEE
Q 013680 331 SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSF 410 (438)
Q Consensus 331 ~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~ 410 (438)
....++|||||++++||+++|++|.+++ ++... ...+|.++|+....+|.|+|+| +|++|.|++++|++
T Consensus 204 ~~~~~ivDSGtt~~~lp~~~~~~l~~~~----~~~~~------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~ 272 (320)
T cd05488 204 ENTGAAIDTGTSLIALPSDLAEMLNAEI----GAKKS------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTL 272 (320)
T ss_pred CCCeEEEcCCcccccCCHHHHHHHHHHh----CCccc------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHhee
Confidence 6778999999999999999987776544 33221 1345888998767899999999 78999999999998
Q ss_pred eeCCCCceEEEEEEEc
Q 013680 411 PENEVGDHACFSYFTL 426 (438)
Q Consensus 411 ~~~~~~~~~Cl~~~~~ 426 (438)
+. ...|+..+..
T Consensus 273 ~~----~g~C~~~~~~ 284 (320)
T cd05488 273 EV----SGSCISAFTG 284 (320)
T ss_pred cC----CCeEEEEEEE
Confidence 54 2379987654
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.6e-46 Score=380.31 Aligned_cols=278 Identities=21% Similarity=0.359 Sum_probs=221.9
Q ss_pred CCceeeecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCC
Q 013680 96 GSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS 175 (438)
Q Consensus 96 ~~~~~~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~ 175 (438)
+....++.|+.|.+||++|.||||||+|.|++||||+++||+|. .|....|. .++.|||++||||+.+.+.
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~C~-------~~~~yd~s~SSTy~~~~~~ 177 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGGCA-------PHRKFDPKKSSTYTKLKLG 177 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCccccc-------ccCCCCccccCCcEecCCC
Confidence 34568899999999999999999999999999999999999994 44433332 4689999999999985321
Q ss_pred CcCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEee
Q 013680 176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMG 255 (438)
Q Consensus 176 ~~~C~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlG 255 (438)
. ....+.++|++| +..|.+++|+|+|++. .++++.|||++.+++..+...++|||||
T Consensus 178 ~-------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILG 234 (482)
T PTZ00165 178 D-------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVG 234 (482)
T ss_pred C-------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceee
Confidence 1 112567999998 6789999999999875 5789999999998775555557899999
Q ss_pred cCCCCCC---------hhHHHHhhcCC-cCcEEEEecCC--CCceEEeCcCCCCCc---eeeeeeecCCCCccEEEeEee
Q 013680 256 LGLGDVS---------VPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPATQ---QSTSFLPIGEKYDAYFVGVES 320 (438)
Q Consensus 256 Lg~~~~S---------~~~qL~~~g~i-~~~FS~cL~~~--~~G~l~fG~~d~~~~---~~~p~v~~~~~~~~y~v~l~~ 320 (438)
||++.++ +..+|+++|++ +++||+||.++ .+|.|+||++|+.+. +++.|+|+... .+|.|.+++
T Consensus 235 Lg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-~yW~i~l~~ 313 (482)
T PTZ00165 235 LGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-DYWEIEVVD 313 (482)
T ss_pred cCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-ceEEEEeCe
Confidence 9998752 34569999999 89999999764 469999999998754 47899998775 899999999
Q ss_pred EEecCeEee--cCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCC
Q 013680 321 YCIGNSCLT--QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN 398 (438)
Q Consensus 321 i~vg~~~~~--~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg 398 (438)
|+||++.+. .....+|+||||+++++|+++|++|.+++ +.. .+|+....+|+|+|+| +|
T Consensus 314 i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~~--------------~~C~~~~~lP~itf~f-~g 374 (482)
T PTZ00165 314 ILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKI----PLE--------------EDCSNKDSLPRISFVL-ED 374 (482)
T ss_pred EEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHc----CCc--------------ccccccccCCceEEEE-CC
Confidence 999998764 35678999999999999999988776544 321 1455556789999999 44
Q ss_pred c-----EEEEecceeEEeeC--CCCceEEEEEEE
Q 013680 399 Q-----SFVVRNHIFSFPEN--EVGDHACFSYFT 425 (438)
Q Consensus 399 ~-----~~~l~~~~y~~~~~--~~~~~~Cl~~~~ 425 (438)
. +|.+++++|+++.. +.....|+..+.
T Consensus 375 ~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~ 408 (482)
T PTZ00165 375 VNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGII 408 (482)
T ss_pred CCCceEEEEEchHHeeeecccCCCCCCeEEEEEE
Confidence 3 89999999999741 223568975444
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.6e-45 Score=363.60 Aligned_cols=264 Identities=26% Similarity=0.416 Sum_probs=215.4
Q ss_pred eecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCC-CCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 013680 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAP-LSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (438)
Q Consensus 101 ~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~-~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C 179 (438)
++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|.. ..| ..++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~C~~~~~C-------~~~~~y~~~~SsT~~~~------- 65 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS--KCYFSIAC-------YFHSKYKSSKSSTYKKN------- 65 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC--CCCCCccc-------cccCcCCcccCCCcccC-------
Confidence 567888999999999999999999999999999999995 4431 122 23578999999999973
Q ss_pred CCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCC
Q 013680 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (438)
Q Consensus 180 ~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (438)
...+.+.|++| ++.|.+++|+|+|++. .++++.|||++.+.+..+.....|||||||+.
T Consensus 66 -----------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~ 124 (317)
T cd06098 66 -----------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceecccccc
Confidence 47899999997 6799999999999875 56899999999876643444467999999998
Q ss_pred CCCh------hHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCeE
Q 013680 260 DVSV------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (438)
Q Consensus 260 ~~S~------~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~~ 327 (438)
.++. ..+|+++|++ +++||+||.++ ..|.|+||++|+.+. +++.|+|+... .+|.|.+++|+||++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-GYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-cEEEEEeCeEEECCEE
Confidence 7664 3468999998 78999999853 469999999999874 68888888764 7999999999999987
Q ss_pred ee--cCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEec
Q 013680 328 LT--QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRN 405 (438)
Q Consensus 328 ~~--~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~ 405 (438)
+. .....+||||||++++||+++++++. +.++|.....+|+|+|+| +|+.|.|++
T Consensus 204 ~~~~~~~~~aivDTGTs~~~lP~~~~~~i~----------------------~~~~C~~~~~~P~i~f~f-~g~~~~l~~ 260 (317)
T cd06098 204 TGFCAGGCAAIADSGTSLLAGPTTIVTQIN----------------------SAVDCNSLSSMPNVSFTI-GGKTFELTP 260 (317)
T ss_pred eeecCCCcEEEEecCCcceeCCHHHHHhhh----------------------ccCCccccccCCcEEEEE-CCEEEEECh
Confidence 64 24567999999999999998755442 234565556789999999 889999999
Q ss_pred ceeEEeeCCCCceEEEEEEE
Q 013680 406 HIFSFPENEVGDHACFSYFT 425 (438)
Q Consensus 406 ~~y~~~~~~~~~~~Cl~~~~ 425 (438)
++|+++..++....|++.+.
T Consensus 261 ~~yi~~~~~~~~~~C~~~~~ 280 (317)
T cd06098 261 EQYILKVGEGAAAQCISGFT 280 (317)
T ss_pred HHeEEeecCCCCCEEeceEE
Confidence 99998765433468987654
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.8e-45 Score=363.16 Aligned_cols=266 Identities=21% Similarity=0.385 Sum_probs=217.4
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCC
Q 013680 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLK 189 (438)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~ 189 (438)
||++|.||||+|++.|++||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~C~-------~~~~y~~~~SsT~~~~----------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQACT-------KHNRFQPSESSTYVSN----------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCcccC-------ccceECCCCCcccccC-----------------
Confidence 789999999999999999999999999994 44433332 3578999999999873
Q ss_pred CCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCCh------
Q 013680 190 DPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV------ 263 (438)
Q Consensus 190 ~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~------ 263 (438)
.|.|++.|++| ++.|.+++|+|+|++. .++++.|||+..+.+..+.....|||||||++.++.
T Consensus 55 -~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~ 123 (316)
T cd05486 55 -GEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPV 123 (316)
T ss_pred -CcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCH
Confidence 58999999997 6899999999999875 567999999988877544444679999999987664
Q ss_pred hHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEecCeEee-cCCcceE
Q 013680 264 PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQAL 336 (438)
Q Consensus 264 ~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~-~~~~~ai 336 (438)
..+|+++|++ +++||+||.++ ..|.|+||++|+.+ .+++.|+|+... .+|.|.+++|+||++.+. .....+|
T Consensus 124 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-~~w~v~l~~i~v~g~~~~~~~~~~ai 202 (316)
T cd05486 124 FDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-GYWQIQLDNIQVGGTVIFCSDGCQAI 202 (316)
T ss_pred HHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-eEEEEEeeEEEEecceEecCCCCEEE
Confidence 5568999999 78999999864 36999999999876 468888887765 899999999999998764 3456899
Q ss_pred EcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEEeeCCCC
Q 013680 337 VDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEVG 416 (438)
Q Consensus 337 iDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~~~~ 416 (438)
|||||++++||+++|++|.+++ ++... +.+|.++|+....+|+|+|+| +|..|.|++++|++......
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~----~~~~~-------~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~ 270 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYI----GATAT-------DGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDG 270 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHh----CCccc-------CCcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCC
Confidence 9999999999999988876544 33211 234788998767899999999 78999999999998753222
Q ss_pred ceEEEEEEE
Q 013680 417 DHACFSYFT 425 (438)
Q Consensus 417 ~~~Cl~~~~ 425 (438)
...|+..+.
T Consensus 271 ~~~C~~~~~ 279 (316)
T cd05486 271 GGYCSSGFQ 279 (316)
T ss_pred CCEEeeEEE
Confidence 468987654
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.1e-45 Score=361.74 Aligned_cols=265 Identities=21% Similarity=0.392 Sum_probs=218.1
Q ss_pred cceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 013680 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (438)
Q Consensus 107 ~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~ 186 (438)
|..|+++|.||||||++.|++||||+++||+|. .|..+.|. .++.|+|++|+|++.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C~-------~~~~f~~~~SsT~~~--------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQACT-------NHTKFNPSQSSTYST--------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCcccc-------ccCCCCcccCCCceE---------------
Confidence 468999999999999999999999999999994 44443332 357999999999997
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCC------
Q 013680 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------ 260 (438)
Q Consensus 187 ~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------ 260 (438)
..|.|++.|++| ++.|.+++|+|+|++. .++++.|||++...+..+...+.+||||||++.
T Consensus 57 ---~~~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 57 ---NGETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred ---CCcEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 358999999997 5799999999999875 568999999998766433334569999999864
Q ss_pred CChhHHHHhhcCC-cCcEEEEecCC---CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCeEee--cCCc
Q 013680 261 VSVPSLLAKAGLI-QNSFSICFDEN---DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNSCLT--QSGF 333 (438)
Q Consensus 261 ~S~~~qL~~~g~i-~~~FS~cL~~~---~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~--~~~~ 333 (438)
.+++.+|+++|.| +++||+||.++ ..|.|.||++|+.+. +.+.|+++... .+|.|++++|+||++.+. ....
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~ 202 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-TYWQIGIQGFQINGQATGWCSQGC 202 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-eEEEEEeeEEEECCEEecccCCCc
Confidence 3457789999999 89999999875 469999999998764 67888887765 899999999999998764 2456
Q ss_pred ceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEEeeC
Q 013680 334 QALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPEN 413 (438)
Q Consensus 334 ~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~ 413 (438)
.+||||||++++||+++|++|.+++..+.. . ..+|.++|+....+|+|+|+| +|.++.+++++|++..
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQD----Q------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCccc----c------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 799999999999999999998876643211 1 235889998777899999999 7899999999999875
Q ss_pred CCCceEEEEEE
Q 013680 414 EVGDHACFSYF 424 (438)
Q Consensus 414 ~~~~~~Cl~~~ 424 (438)
..+|+..+
T Consensus 271 ---~~~C~~~i 278 (318)
T cd05477 271 ---NGYCTVGI 278 (318)
T ss_pred ---CCeEEEEE
Confidence 24797444
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.4e-45 Score=360.67 Aligned_cols=273 Identities=23% Similarity=0.406 Sum_probs=220.3
Q ss_pred cccccceEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCC
Q 013680 103 GNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKS 181 (438)
Q Consensus 103 ~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~ 181 (438)
.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++.
T Consensus 2 ~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c-------~~~~~y~~~~SsT~~~---------- 63 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY-TAC-------VTHNLYDASDSSTYKE---------- 63 (326)
T ss_pred cccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc-hhh-------cccCcCCCCCCeeeeE----------
Confidence 5778899999999999999999999999999999995 55431 122 2468999999999997
Q ss_pred CCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCC
Q 013680 182 RSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV 261 (438)
Q Consensus 182 ~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~ 261 (438)
..|.|++.|++| ++.|.+++|+|+|++. .+ ++.|||+....+.-+.....|||||||++..
T Consensus 64 --------~~~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~ 124 (326)
T cd05487 64 --------NGTEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------CCEEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEEEEEEeccCCccceeecceEEecCChhh
Confidence 358999999997 6899999999999875 23 4789999876532222335799999999766
Q ss_pred Ch------hHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCeEee
Q 013680 262 SV------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNSCLT 329 (438)
Q Consensus 262 S~------~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~~~~ 329 (438)
+. ..+|+++|+| +++||+||.++ ..|.|+||++|+.++ +++.|+++... .+|.|.+++|+||++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-GFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-ceEEEEecEEEECCEEEe
Confidence 53 4458899999 89999999864 369999999999874 67888887664 799999999999999875
Q ss_pred c-CCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEeccee
Q 013680 330 Q-SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIF 408 (438)
Q Consensus 330 ~-~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y 408 (438)
. ....+||||||++++||+++|+++++++. +... ..+|.++|+....+|+|+|+| ||..+.|++++|
T Consensus 204 ~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~----~~~~-------~~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~y 271 (326)
T cd05487 204 CEDGCTAVVDTGASFISGPTSSISKLMEALG----AKER-------LGDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDY 271 (326)
T ss_pred cCCCCEEEECCCccchhCcHHHHHHHHHHhC----Cccc-------CCCEEEeccccCCCCCEEEEE-CCEEEEeCHHHh
Confidence 3 45679999999999999999888876653 2221 123788998777899999999 889999999999
Q ss_pred EEeeCCCCceEEEEEEE
Q 013680 409 SFPENEVGDHACFSYFT 425 (438)
Q Consensus 409 ~~~~~~~~~~~Cl~~~~ 425 (438)
+++..+.....|+..+.
T Consensus 272 i~~~~~~~~~~C~~~~~ 288 (326)
T cd05487 272 VLQDSDFSDKLCTVAFH 288 (326)
T ss_pred EEeccCCCCCEEEEEEE
Confidence 99875433568986554
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=5.1e-45 Score=361.28 Aligned_cols=268 Identities=25% Similarity=0.450 Sum_probs=214.1
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 187 (438)
+||++|.||||+|++.|++||||+++||+|. |..|..+. ++.|+|++|+|++.++|++..|.....|.+
T Consensus 3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~----------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~ 72 (326)
T cd06096 3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM----------EPPYNLNNSITSSILYCDCNKCCYCLSCLN 72 (326)
T ss_pred eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC----------CCCcCcccccccccccCCCccccccCcCCC
Confidence 6999999999999999999999999999997 88876432 478999999999999999999976555644
Q ss_pred CCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCCh---h
Q 013680 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV---P 264 (438)
Q Consensus 188 ~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~---~ 264 (438)
+.|.|.+.|++| +.+.|.+++|+|+|++..... ......++.|||+..+.+.|... ..+||||||+...+. +
T Consensus 73 --~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~ 147 (326)
T cd06096 73 --NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTP 147 (326)
T ss_pred --CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCch
Confidence 569999999996 678999999999998752110 00122468999999988765443 569999999987532 2
Q ss_pred H-HHHhhcCC-c--CcEEEEecCCCCceEEeCcCCCCCc-----------eeeeeeecCCCCccEEEeEeeEEecCeE--
Q 013680 265 S-LLAKAGLI-Q--NSFSICFDENDSGSVFFGDQGPATQ-----------QSTSFLPIGEKYDAYFVGVESYCIGNSC-- 327 (438)
Q Consensus 265 ~-qL~~~g~i-~--~~FS~cL~~~~~G~l~fG~~d~~~~-----------~~~p~v~~~~~~~~y~v~l~~i~vg~~~-- 327 (438)
. +|.+++.+ . ++||+||+++ .|.|+||++|+.+. +.+.|+|+... .+|.|.+++|+|+++.
T Consensus 148 ~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 148 IILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-YYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred hHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC-ceEEEEEEEEEEcccccc
Confidence 2 24455554 3 8999999975 79999999998653 46778887765 7999999999999985
Q ss_pred -eecCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecc
Q 013680 328 -LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNH 406 (438)
Q Consensus 328 -~~~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~ 406 (438)
.......+||||||++++||+++|++|.+++ |+|+|+|++|..+.++|+
T Consensus 226 ~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p~ 275 (326)
T cd06096 226 SGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKPS 275 (326)
T ss_pred eecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECHH
Confidence 2335678999999999999999999887655 899999965899999999
Q ss_pred eeEEeeCCCCceEEEEEEEc
Q 013680 407 IFSFPENEVGDHACFSYFTL 426 (438)
Q Consensus 407 ~y~~~~~~~~~~~Cl~~~~~ 426 (438)
+|++..++ . .|..++..
T Consensus 276 ~y~~~~~~--~-~c~~~~~~ 292 (326)
T cd06096 276 SYLYKKES--F-WCKGGEKS 292 (326)
T ss_pred HhccccCC--c-eEEEEEec
Confidence 99988653 2 34444443
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.5e-44 Score=352.22 Aligned_cols=254 Identities=27% Similarity=0.494 Sum_probs=205.4
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 188 (438)
+|+++|.||||||++.|++||||+++||+| ..|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c--~~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQC--QPC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccC--CCC---------------------------------------------
Confidence 499999999999999999999999999988 222
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCChhHHHH
Q 013680 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (438)
Q Consensus 189 ~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~qL~ 268 (438)
|.|.+.|++| +.++|.+++|+|+|++. ...+++.|||++.+++.+. ..+||||||+..++++.||.
T Consensus 34 ---~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~ 99 (299)
T cd05472 34 ---CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTA 99 (299)
T ss_pred ---CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhh
Confidence 6899999996 66789999999999864 1457899999998877542 56999999999999999987
Q ss_pred hhcCCcCcEEEEecC---CCCceEEeCcCCCCCceeeeeeecCC---CCccEEEeEeeEEecCeEeec-----CCcceEE
Q 013680 269 KAGLIQNSFSICFDE---NDSGSVFFGDQGPATQQSTSFLPIGE---KYDAYFVGVESYCIGNSCLTQ-----SGFQALV 337 (438)
Q Consensus 269 ~~g~i~~~FS~cL~~---~~~G~l~fG~~d~~~~~~~p~v~~~~---~~~~y~v~l~~i~vg~~~~~~-----~~~~aii 337 (438)
.+ .+++||+||.+ ...|.|+||++|+. .+.+.|+|+.. ...+|.|+|++|+||++.+.. ....+||
T Consensus 100 ~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iv 176 (299)
T cd05472 100 SS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVII 176 (299)
T ss_pred Hh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEE
Confidence 54 57899999986 34799999999997 55555555443 236899999999999998753 2457999
Q ss_pred cccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEEeeCCCCc
Q 013680 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEVGD 417 (438)
Q Consensus 338 DSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~~~~~ 417 (438)
||||++++||+++|++|.+++.+++...........++.||..++.....+|+|+|+|++|..|.|++++|++...+ .+
T Consensus 177 DSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~ 255 (299)
T cd05472 177 DSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD-SS 255 (299)
T ss_pred eCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC-CC
Confidence 99999999999999999999988764332222223455799888766678999999996589999999999984322 25
Q ss_pred eEEEEEEEcC
Q 013680 418 HACFSYFTLE 427 (438)
Q Consensus 418 ~~Cl~~~~~~ 427 (438)
..|+++....
T Consensus 256 ~~C~~~~~~~ 265 (299)
T cd05472 256 QVCLAFAGTS 265 (299)
T ss_pred CEEEEEeCCC
Confidence 6899887653
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.5e-43 Score=357.30 Aligned_cols=277 Identities=19% Similarity=0.325 Sum_probs=218.5
Q ss_pred CCceeeecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCC
Q 013680 96 GSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS 175 (438)
Q Consensus 96 ~~~~~~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~ 175 (438)
.+..+++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|....|. .++.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~--~C~~~~C~-------~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI--KCTTEGCE-------TKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec--CCCccccc-------CCCccCCccCcceEEC---
Confidence 34568899999999999999999999999999999999999995 44333332 3578999999999873
Q ss_pred CcCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCC--CCCCCCCceE
Q 013680 176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGS--YLDGAAPDGV 253 (438)
Q Consensus 176 ~~~C~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~--~~~~~~~dGI 253 (438)
.+.|++.|++| ++.|.+++|+|+|++. .++ ..|+|+....+. ++.....|||
T Consensus 194 ---------------~~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DGI 247 (453)
T PTZ00147 194 ---------------GTKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDGI 247 (453)
T ss_pred ---------------CCEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccce
Confidence 58999999997 6899999999999875 344 579998876652 2233467999
Q ss_pred eecCCCCCCh------hHHHHhhcCC-cCcEEEEecCC--CCceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEe
Q 013680 254 MGLGLGDVSV------PSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCI 323 (438)
Q Consensus 254 lGLg~~~~S~------~~qL~~~g~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~v 323 (438)
||||+++++. +.+|+++|+| +++||+||+++ ..|.|+||++|+.+ .+++.|+|+... .+|.|.++ +.+
T Consensus 248 LGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-~~W~V~l~-~~v 325 (453)
T PTZ00147 248 FGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-LYWQVDLD-VHF 325 (453)
T ss_pred ecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-ceEEEEEE-EEE
Confidence 9999987664 4578999999 78999999863 46999999999987 468888888654 79999998 578
Q ss_pred cCeEeecCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEE
Q 013680 324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVV 403 (438)
Q Consensus 324 g~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l 403 (438)
|+... ....+||||||+++++|+++++++.+++. +..... ...|..+|+. ..+|+|+|+| +|..++|
T Consensus 326 g~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~----~~~~~~-----~~~y~~~C~~-~~lP~~~f~f-~g~~~~L 392 (453)
T PTZ00147 326 GNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLD----VFKVPF-----LPLYVTTCNN-TKLPTLEFRS-PNKVYTL 392 (453)
T ss_pred CCEec--CceeEEECCCCchhcCCHHHHHHHHHHhC----CeecCC-----CCeEEEeCCC-CCCCeEEEEE-CCEEEEE
Confidence 77543 45689999999999999999888776553 221111 1125667865 5789999999 7889999
Q ss_pred ecceeEEeeCCCCceEEEEEEE
Q 013680 404 RNHIFSFPENEVGDHACFSYFT 425 (438)
Q Consensus 404 ~~~~y~~~~~~~~~~~Cl~~~~ 425 (438)
++++|+....+.....|+..+.
T Consensus 393 ~p~~yi~~~~~~~~~~C~~~i~ 414 (453)
T PTZ00147 393 EPEYYLQPIEDIGSALCMLNII 414 (453)
T ss_pred CHHHheeccccCCCcEEEEEEE
Confidence 9999997653333457986544
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.1e-42 Score=348.53 Aligned_cols=288 Identities=17% Similarity=0.300 Sum_probs=220.0
Q ss_pred CCceeeecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCC
Q 013680 96 GSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS 175 (438)
Q Consensus 96 ~~~~~~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~ 175 (438)
.+..+++.++.+.+||++|.||||+|+|.|++||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~--~C~~~~C~-------~~~~yd~s~SsT~~~~--- 192 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCDSIGCS-------IKNLYDSSKSKSYEKD--- 192 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc--cCCccccc-------cCCCccCccCcccccC---
Confidence 34567888999999999999999999999999999999999995 44332332 3578999999999983
Q ss_pred CcCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccC--CCCCCCCCceE
Q 013680 176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG--SYLDGAAPDGV 253 (438)
Q Consensus 176 ~~~C~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g--~~~~~~~~dGI 253 (438)
.|.|++.|++| ++.|.+++|+|+|++. ..+ ..|+++....+ ..+....+|||
T Consensus 193 ---------------~~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~~-~~f~~~~~~~~~~~~~~~~~~dGI 246 (450)
T PTZ00013 193 ---------------GTKVDITYGSG--TVKGFFSKDLVTLGHL--------SMP-YKFIEVTDTDDLEPIYSSSEFDGI 246 (450)
T ss_pred ---------------CcEEEEEECCc--eEEEEEEEEEEEECCE--------EEc-cEEEEEEeccccccceecccccce
Confidence 58999999997 5899999999999875 333 67888876543 22333467999
Q ss_pred eecCCCCCCh------hHHHHhhcCC-cCcEEEEecCC--CCceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEe
Q 013680 254 MGLGLGDVSV------PSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCI 323 (438)
Q Consensus 254 lGLg~~~~S~------~~qL~~~g~i-~~~FS~cL~~~--~~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~v 323 (438)
||||++.++. +.+|+++|+| +++||+||+++ ..|.|+||++|+++. +++.|+|+... .+|.|.++ +.+
T Consensus 247 lGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-~yW~I~l~-v~~ 324 (450)
T PTZ00013 247 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-LYWQIDLD-VHF 324 (450)
T ss_pred ecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-ceEEEEEE-EEE
Confidence 9999987653 5679999999 78999999864 469999999999874 68889888764 79999998 777
Q ss_pred cCeEeecCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEE
Q 013680 324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVV 403 (438)
Q Consensus 324 g~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l 403 (438)
|.... ....+||||||+++++|+++++++.+++ +...... ...|..+|+. ..+|+|+|+| +|..+.|
T Consensus 325 G~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l----~~~~~~~-----~~~y~~~C~~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 325 GKQTM--QKANVIVDSGTTTITAPSEFLNKFFANL----NVIKVPF-----LPFYVTTCDN-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred Cceec--cccceEECCCCccccCCHHHHHHHHHHh----CCeecCC-----CCeEEeecCC-CCCCeEEEEE-CCEEEEE
Confidence 76544 3567999999999999999977766444 3322211 1126677865 5789999999 7889999
Q ss_pred ecceeEEeeCCCCceEEEEEEEcCCCceeEEEe
Q 013680 404 RNHIFSFPENEVGDHACFSYFTLEYNFTGILIL 436 (438)
Q Consensus 404 ~~~~y~~~~~~~~~~~Cl~~~~~~~~~~g~~il 436 (438)
++++|+....+..+..|+..+...+...+.|||
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~IL 424 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDIDDNTFIL 424 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCCCCCCEEE
Confidence 999998753221245898665433222234554
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.3e-42 Score=331.47 Aligned_cols=228 Identities=29% Similarity=0.608 Sum_probs=187.2
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC--CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ--CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~--C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~ 186 (438)
+||++|.||||||++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 5899999999999999999999999999983 3333
Q ss_pred CCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCC-CCCCCceEeecCCCCCChhH
Q 013680 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYL-DGAAPDGVMGLGLGDVSVPS 265 (438)
Q Consensus 187 ~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~-~~~~~dGIlGLg~~~~S~~~ 265 (438)
.|.|+++|+|+ +.+.|.+++|+|+|+..++. ...+++.|||+..+.+.+. ...+.|||||||+++.++++
T Consensus 39 ----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 28999999975 68899999999999754221 2457899999988776532 33467999999999999999
Q ss_pred HHHhhcCCcCcEEEEecCCCCceEEeCcCCCCCceeeeeeecCCC--CccEEEeEeeEEecCeEeecCCcceEEcccCcc
Q 013680 266 LLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK--YDAYFVGVESYCIGNSCLTQSGFQALVDSGASF 343 (438)
Q Consensus 266 qL~~~g~i~~~FS~cL~~~~~G~l~fG~~d~~~~~~~p~v~~~~~--~~~y~v~l~~i~vg~~~~~~~~~~aiiDSGTs~ 343 (438)
||+++++++++||+||+++.+|.|+||+... +.+.+.|+|+... ..+|.|++++|+||++.+......+||||||++
T Consensus 110 ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~ 188 (273)
T cd05475 110 QLASQGIIKNVIGHCLSSNGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSY 188 (273)
T ss_pred HHHhcCCcCceEEEEccCCCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCce
Confidence 9999998899999999987779999996432 3344556555442 379999999999999976556678999999999
Q ss_pred ccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCC---cEEEEecceeEEeeCCCCceEE
Q 013680 344 TFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN---QSFVVRNHIFSFPENEVGDHAC 420 (438)
Q Consensus 344 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg---~~~~l~~~~y~~~~~~~~~~~C 420 (438)
|+||+++| +|+|+|+|+++ ++++|++++|++...+ +..|
T Consensus 189 t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~C 230 (273)
T cd05475 189 TYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVC 230 (273)
T ss_pred EEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEE
Confidence 99999986 58999999544 6999999999987654 5689
Q ss_pred EEEEEcC
Q 013680 421 FSYFTLE 427 (438)
Q Consensus 421 l~~~~~~ 427 (438)
++++...
T Consensus 231 l~~~~~~ 237 (273)
T cd05475 231 LGILNGS 237 (273)
T ss_pred EEEecCC
Confidence 9998754
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=7.4e-42 Score=343.71 Aligned_cols=291 Identities=19% Similarity=0.244 Sum_probs=211.3
Q ss_pred ceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 013680 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (438)
Q Consensus 108 ~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 187 (438)
..||++|.||||+|+|.|++||||+++||+|. .|.. .++.|+|++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~-----------~~~~f~~~~SsT~~~~--------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF-----------IHTYFHRELSSTYRDL--------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc-----------ccccCCchhCcCcccC---------------
Confidence 46999999999999999999999999999995 3311 1478999999999984
Q ss_pred CCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCCh----
Q 013680 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV---- 263 (438)
Q Consensus 188 ~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~---- 263 (438)
.|.|++.|++| ++.|.+++|+|+|++.. .....+.|++.....+.+......|||||||++.++.
T Consensus 54 ---~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 54 ---GKGVTVPYTQG--SWEGELGTDLVSIPKGP------NVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---CceEEEEECcc--eEEEEEEEEEEEECCCC------ccceEEeeEEEeccccceecccccceeeeecccccccCCCC
Confidence 48999999997 67999999999998531 1122345677766555444444679999999987753
Q ss_pred ----hHHHHhhcCCcCcEEEEecC-----------CCCceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEecCeE
Q 013680 264 ----PSLLAKAGLIQNSFSICFDE-----------NDSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (438)
Q Consensus 264 ----~~qL~~~g~i~~~FS~cL~~-----------~~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vg~~~ 327 (438)
..+|.+++.++++||++|.. ...|.|+||++|+.+ .+++.|+|+... .+|.|.+++|+||++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-WYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-eeEEEEEEEEEECCEe
Confidence 34688888888899998742 136999999999876 456777777654 7999999999999998
Q ss_pred eecC-----CcceEEcccCccccccHHHHHHHHHHHHHHhccccccccC--ccccceeecccccccCCCeEEEEEcCC--
Q 013680 328 LTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG--NSWKYCYNASSEEMLKVPDMRLIFSKN-- 398 (438)
Q Consensus 328 ~~~~-----~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~Cy~~~~~~~~~~P~it~~f~gg-- 398 (438)
+... ...+||||||++++||+++|++|.+++.++.......... .....|+.........+|+|+|+|+|+
T Consensus 202 ~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~ 281 (364)
T cd05473 202 LNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENS 281 (364)
T ss_pred cccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCC
Confidence 7532 1369999999999999999999999998765322111110 001245543322223689999999652
Q ss_pred ---cEEEEecceeEEeeCC-CCceEEEEEEEcC---CCceeEEEeeC
Q 013680 399 ---QSFVVRNHIFSFPENE-VGDHACFSYFTLE---YNFTGILILQK 438 (438)
Q Consensus 399 ---~~~~l~~~~y~~~~~~-~~~~~Cl~~~~~~---~~~~g~~il~~ 438 (438)
..+.|++++|++.... +....|+++.... ....|.++||+
T Consensus 282 ~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~ 328 (364)
T cd05473 282 SQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEG 328 (364)
T ss_pred CceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcc
Confidence 3678899999886432 1246898643321 23456666653
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.4e-40 Score=320.76 Aligned_cols=239 Identities=21% Similarity=0.331 Sum_probs=193.6
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 013680 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (438)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 188 (438)
|+++|.||||+|++.|++||||+++||+|. |..|... .++.|+|++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~----------~~~~y~~~~Sst~~~~~--------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG----------GHKLYDPSKSSTAKLLP--------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc----------cCCcCCCccCccceecC---------------
Confidence 789999999999999999999999999997 7766432 25679999999998742
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCCh-----
Q 013680 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV----- 263 (438)
Q Consensus 189 ~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~----- 263 (438)
.|.|.+.|++| +.+.|.+++|+|+|++. .++++.|||++...+.++....++||||||+..++.
T Consensus 56 --~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 --GATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred --CcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 58999999996 56899999999999875 568899999998876555545789999999987653
Q ss_pred ----hHHHHhhcCCcCcEEEEecCCCCceEEeCcCCCCC-ceeeeeeecCCCCccEEEeEeeEEecCeEe-ecCCcceEE
Q 013680 264 ----PSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCL-TQSGFQALV 337 (438)
Q Consensus 264 ----~~qL~~~g~i~~~FS~cL~~~~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vg~~~~-~~~~~~aii 337 (438)
..+|.+++. ++.||+||.++..|.|+||++|+.+ .+++.|+|+.....+|.|++++|+||++.. ......+||
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ii 203 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIA 203 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEe
Confidence 334666654 8999999997678999999999876 468888887764489999999999999843 345678999
Q ss_pred cccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEE
Q 013680 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395 (438)
Q Consensus 338 DSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f 395 (438)
||||+++++|+++++++.+++. +.. ... ...+|.++|+.. +|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~---g~~-~~~----~~~~~~~~C~~~--~P~i~f~~ 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVP---GAY-YDS----EYGGWVFPCDTT--LPDLSFAV 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCc---CCc-ccC----CCCEEEEECCCC--CCCEEEEE
Confidence 9999999999999777765442 221 111 134689999853 89999999
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.7e-39 Score=310.33 Aligned_cols=215 Identities=28% Similarity=0.553 Sum_probs=181.8
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 188 (438)
+|+++|.||||+|++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999986
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCChhHHHH
Q 013680 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (438)
Q Consensus 189 ~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~qL~ 268 (438)
|.|.+.|+|+ +.++|.+++|+|+|++.. ..++++.|||++.+.+ + .....+||||||+...|++.||.
T Consensus 31 ---~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~ 98 (265)
T cd05476 31 ---CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLG 98 (265)
T ss_pred ---CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhh
Confidence 6789999985 689999999999999751 1468899999999876 3 33467999999999999999998
Q ss_pred hhcCCcCcEEEEecC----CCCceEEeCcCCCCCceeeeeeecCCC---CccEEEeEeeEEecCeEee----------cC
Q 013680 269 KAGLIQNSFSICFDE----NDSGSVFFGDQGPATQQSTSFLPIGEK---YDAYFVGVESYCIGNSCLT----------QS 331 (438)
Q Consensus 269 ~~g~i~~~FS~cL~~----~~~G~l~fG~~d~~~~~~~p~v~~~~~---~~~y~v~l~~i~vg~~~~~----------~~ 331 (438)
.++ ++||+||.+ +..|.|+||++|+.+.+.+.|+|+... ..+|.|++++|+|+++.+. ..
T Consensus 99 ~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 175 (265)
T cd05476 99 STG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175 (265)
T ss_pred ccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC
Confidence 876 899999986 347999999999975455555555432 4799999999999999874 24
Q ss_pred CcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEEe
Q 013680 332 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 411 (438)
Q Consensus 332 ~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~~ 411 (438)
...+||||||++++||+++| |+|+|+|.+|..|.+++++|+++
T Consensus 176 ~~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 56799999999999999986 89999995589999999999986
Q ss_pred eCCCCceEEEEEEEcC
Q 013680 412 ENEVGDHACFSYFTLE 427 (438)
Q Consensus 412 ~~~~~~~~Cl~~~~~~ 427 (438)
..+ +..|++++...
T Consensus 219 ~~~--~~~C~~~~~~~ 232 (265)
T cd05476 219 VGE--GVVCLAILSSS 232 (265)
T ss_pred CCC--CCEEEEEecCC
Confidence 543 57999988763
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.4e-39 Score=315.77 Aligned_cols=268 Identities=27% Similarity=0.497 Sum_probs=218.8
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 187 (438)
.|+++|.||||+|++.|++||||+.+||++. |..|. .| .....|+|.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~--~~-------~~~~~y~~~~S~t~~~~--------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS--SC-------ASSGFYNPSKSSTFSNQ--------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT--HH-------CTSC-BBGGGSTTEEEE---------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc--cc-------ccccccccccccccccc---------------
Confidence 4999999999999999999999999999986 66551 11 23578999999999985
Q ss_pred CCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCC-------
Q 013680 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------- 260 (438)
Q Consensus 188 ~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------- 260 (438)
.+.+.+.|++| .++|.+++|+|.|++. ..+++.||++....+..+.....+||||||+..
T Consensus 57 ---~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 57 ---GKPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 37899999997 5999999999999986 567899999999765433334679999999754
Q ss_pred CChhHHHHhhcCC-cCcEEEEecCCC--CceEEeCcCCCCCc-eeeeeeecCCCCccEEEeEeeEEecCe-EeecCCcce
Q 013680 261 VSVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQ-QSTSFLPIGEKYDAYFVGVESYCIGNS-CLTQSGFQA 335 (438)
Q Consensus 261 ~S~~~qL~~~g~i-~~~FS~cL~~~~--~G~l~fG~~d~~~~-~~~p~v~~~~~~~~y~v~l~~i~vg~~-~~~~~~~~a 335 (438)
.++..+|.++|+| +++||++|.+.. .|.|+||++|+.+. +++.|+++... .+|.|.+++|.++++ ........+
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~-~~w~v~~~~i~i~~~~~~~~~~~~~ 202 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS-GYWSVPLDSISIGGESVFSSSGQQA 202 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST-TTTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccc-cccccccccccccccccccccceee
Confidence 3456789999999 899999999864 69999999999874 68888888854 899999999999999 444456789
Q ss_pred EEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEecceeEEeeCCC
Q 013680 336 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEV 415 (438)
Q Consensus 336 iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~~~ 415 (438)
+|||||++++||++++++|.+++... ... .+|.++|+....+|.|+|+| ++.++.+++++|++...+.
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~----~~~-------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGS----YSD-------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTE----EEC-------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESST
T ss_pred ecccccccccccchhhHHHHhhhccc----ccc-------eeEEEecccccccceEEEee-CCEEEEecchHhccccccc
Confidence 99999999999999988887655432 221 34899998877899999999 7899999999999998664
Q ss_pred CceEEEEEEEc
Q 013680 416 GDHACFSYFTL 426 (438)
Q Consensus 416 ~~~~Cl~~~~~ 426 (438)
....|+..+..
T Consensus 271 ~~~~C~~~i~~ 281 (317)
T PF00026_consen 271 NGGYCYLGIQP 281 (317)
T ss_dssp TSSEEEESEEE
T ss_pred ccceeEeeeec
Confidence 34489877665
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=8.6e-38 Score=302.53 Aligned_cols=240 Identities=29% Similarity=0.538 Sum_probs=197.5
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 013680 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (438)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 188 (438)
|+++|.||||+|++.|++||||+++||+|. |..|....+. ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~--------~~~~~~~~s~~~~~----------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP--------RFKYDSSKSSTYKD----------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC--------CCccCccCCceeec-----------------
Confidence 789999999999999999999999999997 7766543321 11377777777765
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCC------CC
Q 013680 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------VS 262 (438)
Q Consensus 189 ~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------~S 262 (438)
..|.|++.|++| .+.|.+++|+++|++. ..+++.|||++...+.+. ....+||||||+.. .+
T Consensus 56 -~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 -TGCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDFS-SSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCCEEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCccc-ccccceEeecCCcccccccCCC
Confidence 469999999997 7899999999999986 468999999999876332 33679999999988 78
Q ss_pred hhHHHHhhcCC-cCcEEEEecCC----CCceEEeCcCCCCC-ceeeeeeecCCC-CccEEEeEeeEEecCe--EeecCCc
Q 013680 263 VPSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEK-YDAYFVGVESYCIGNS--CLTQSGF 333 (438)
Q Consensus 263 ~~~qL~~~g~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~-~~~y~v~l~~i~vg~~--~~~~~~~ 333 (438)
++.||.++++| +++||+||.+. ..|.|+||++|+.+ .+.+.|+++... ..+|.|.+++|.|+++ .......
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 203 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGG 203 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCc
Confidence 89999999998 89999999974 68999999999975 456667776653 4799999999999997 3444567
Q ss_pred ceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEE
Q 013680 334 QALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIF 395 (438)
Q Consensus 334 ~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f 395 (438)
.+||||||++++||+++|++|.+++...... ...|+...|.....+|.|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE
Confidence 8999999999999999999998777655433 2456777787778899999999
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.8e-37 Score=303.00 Aligned_cols=237 Identities=25% Similarity=0.420 Sum_probs=192.3
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 188 (438)
+|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 68999999999999999999999999994
Q ss_pred CCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCC-------
Q 013680 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------- 261 (438)
Q Consensus 189 ~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~------- 261 (438)
.|++.|++| +.+.|.+++|+|+|++. .++++.|||+++.. ..+||||||+.+.
T Consensus 31 ----~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~ 90 (295)
T cd05474 31 ----DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTG 90 (295)
T ss_pred ----eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCC
Confidence 467889985 58999999999999875 45789999998842 3589999999886
Q ss_pred ----ChhHHHHhhcCC-cCcEEEEecCC--CCceEEeCcCCCCCc-eeeeeeecCCCC-----ccEEEeEeeEEecCeEe
Q 013680 262 ----SVPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPATQ-QSTSFLPIGEKY-----DAYFVGVESYCIGNSCL 328 (438)
Q Consensus 262 ----S~~~qL~~~g~i-~~~FS~cL~~~--~~G~l~fG~~d~~~~-~~~p~v~~~~~~-----~~y~v~l~~i~vg~~~~ 328 (438)
+++.+|+++|+| +++||+||.+. ..|.|+||++|+.+. +.+.|+|+.... .+|.|.+++|+|+++.+
T Consensus 91 ~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~ 170 (295)
T cd05474 91 YTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSG 170 (295)
T ss_pred CcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCC
Confidence 578899999999 79999999974 579999999998764 566676665532 68999999999999875
Q ss_pred e----cCCcceEEcccCccccccHHHHHHHHHHHHHHhccccccccCccccceeecccccccCCCeEEEEEcCCcEEEEe
Q 013680 329 T----QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVR 404 (438)
Q Consensus 329 ~----~~~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~it~~f~gg~~~~l~ 404 (438)
. .....+||||||++++||+++|++|.+++.+..... ..+|..+|..... |.|+|+| +|.++.|+
T Consensus 171 ~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---------~~~~~~~C~~~~~-p~i~f~f-~g~~~~i~ 239 (295)
T cd05474 171 NTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---------EGLYVVDCDAKDD-GSLTFNF-GGATISVP 239 (295)
T ss_pred cccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---------CcEEEEeCCCCCC-CEEEEEE-CCeEEEEE
Confidence 3 345679999999999999999999887775432211 2347788876555 9999999 78999999
Q ss_pred cceeEEeeCC--CCceEEE-EEEEcC
Q 013680 405 NHIFSFPENE--VGDHACF-SYFTLE 427 (438)
Q Consensus 405 ~~~y~~~~~~--~~~~~Cl-~~~~~~ 427 (438)
+++|+++... .....|+ ++....
T Consensus 240 ~~~~~~~~~~~~~~~~~C~~~i~~~~ 265 (295)
T cd05474 240 LSDLVLPASTDDGGDGACYLGIQPST 265 (295)
T ss_pred HHHhEeccccCCCCCCCeEEEEEeCC
Confidence 9999987642 1256896 454443
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=1.4e-32 Score=245.21 Aligned_cols=157 Identities=39% Similarity=0.764 Sum_probs=127.6
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC----CC
Q 013680 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----SC 185 (438)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~----~C 185 (438)
||++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|++++|.... .|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------------------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~ 62 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------------------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCC 62 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCC
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------------------CCcccCCccCCcccccCCCCcchhhcccccccC
Confidence 89999999999999999999999999998 248899999999999999999998632 45
Q ss_pred CCCCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCCCCCChhH
Q 013680 186 KSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPS 265 (438)
Q Consensus 186 ~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 265 (438)
......|.|.+.|++ ++.+.|.+++|+|+++...+.. ...+++.|||++.+.|.+. ..+||||||++++|+++
T Consensus 63 ~~~~~~C~y~~~y~~-~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~s 135 (164)
T PF14543_consen 63 CCSNNSCPYSQSYGD-GSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPS 135 (164)
T ss_dssp TCESSEEEEEEEETT-TEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHH
T ss_pred CCCcCcccceeecCC-CccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHH
Confidence 555578999999999 4899999999999999864322 3457999999999997654 56999999999999999
Q ss_pred HHHhhcCCcCcEEEEecC---CCCceEEeCc
Q 013680 266 LLAKAGLIQNSFSICFDE---NDSGSVFFGD 293 (438)
Q Consensus 266 qL~~~g~i~~~FS~cL~~---~~~G~l~fG~ 293 (438)
||+++ ..++|||||.+ +..|.|+||+
T Consensus 136 Ql~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 136 QLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 99887 78999999988 3679999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=7.6e-23 Score=169.88 Aligned_cols=107 Identities=38% Similarity=0.595 Sum_probs=90.4
Q ss_pred EEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCC-CCCCCCCCccccCCCcCCCCCCCCCCCC
Q 013680 112 TWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY-DPSSSSSSKNVSCSHPLCKSRSSCKSLK 189 (438)
Q Consensus 112 ~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f-~p~~SsT~~~~~C~~~~C~~~~~C~~~~ 189 (438)
++|.||||+|++.|+|||||+++||+|. |..|..+. .+.| +|++|++++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~~----------------- 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSDN----------------- 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCCC-----------------
Confidence 3689999999999999999999999997 76664332 2455 99999999873
Q ss_pred CCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeec
Q 013680 190 DPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL 256 (438)
Q Consensus 190 ~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL 256 (438)
.|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||++...+.++.....+|||||
T Consensus 54 -~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 -GCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -CcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 59999999997 6789999999999875 46899999999998876555577999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.78 E-value=1.8e-18 Score=153.89 Aligned_cols=112 Identities=21% Similarity=0.452 Sum_probs=88.6
Q ss_pred cEEEeEeeEEecCeEeecC---------CcceEEcccCccccccHHHHHHHHHHHHHHhccccc---cccCccccceeec
Q 013680 313 AYFVGVESYCIGNSCLTQS---------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI---SLQGNSWKYCYNA 380 (438)
Q Consensus 313 ~y~v~l~~i~vg~~~~~~~---------~~~aiiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~---~~~~~~~~~Cy~~ 380 (438)
+|+|+|++|+||++++... ...+||||||++|+||+++|++|+++|.+++..... ......+++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5999999999999998632 245999999999999999999999999999987642 2334678999999
Q ss_pred cc----ccccCCCeEEEEEcCCcEEEEecceeEEeeCCCCceEEEEEEEc
Q 013680 381 SS----EEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEVGDHACFSYFTL 426 (438)
Q Consensus 381 ~~----~~~~~~P~it~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl~~~~~ 426 (438)
+. .....+|+|+|||+||+.+++++++|++..++ +.+|+++..+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~ 128 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS 128 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc
Confidence 88 34568999999998899999999999999875 6899999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.46 E-value=0.00057 Score=54.36 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=59.6
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 187 (438)
.|++++.|+ .+++.+++|||++.+|+... ...+. . + ..
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---------------~--~-----~~----------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---------------L--P-----LT----------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---------------C--C-----cc-----------------
Confidence 478899999 69999999999999999773 11111 0 0 00
Q ss_pred CCCCCceeEecCCCCceEEEEEEEEEEEeccCCCCCCCCcccccEEEEeEEeccCCCCCCCCCceEeecCC
Q 013680 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL 258 (438)
Q Consensus 188 ~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~ 258 (438)
......+...+| .........+.+++++. ...++.+........ ..+||||+.+
T Consensus 41 --~~~~~~~~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 123555666665 44455666888999875 345566655544321 3699999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.83 E-value=0.38 Score=40.40 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=28.9
Q ss_pred ecccccceEEEEEEeCCCCeEEEEEEECCCCceeEec
Q 013680 102 FGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 102 l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
+....+..|++++.|. .+++.+++|||++.+-+..
T Consensus 4 i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 4 LAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 4445567889999997 6899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=93.25 E-value=0.73 Score=35.63 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.8
Q ss_pred EEEeCCCCeEEEEEEECCCCceeEec
Q 013680 113 WIDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 113 ~i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
++.|+ .+++.+++|||++.+.+..
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~ 25 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISR 25 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECH
Confidence 45666 5899999999999888865
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.32 E-value=1.5 Score=36.89 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.0
Q ss_pred ceEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 013680 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (438)
Q Consensus 108 ~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~ 139 (438)
..+|+++.|+ ++++.+++|||++..++...
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 4678899998 68999999999999999764
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.93 E-value=0.41 Score=37.78 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCeEEEEEEECCCCceeEec
Q 013680 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
+|+++.|+ .+++.+.+||||+..++..
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCH
Confidence 57788998 6899999999999999976
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=82.29 E-value=18 Score=36.06 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=17.9
Q ss_pred EecCCCCceEEEEEEEEEEEeccCC
Q 013680 196 ADYSTEDTSSSGYLVDDILHLASFS 220 (438)
Q Consensus 196 ~~Y~~g~s~~~G~l~~D~l~l~~~~ 220 (438)
..|++| ..-|-+.+-.|+|+++.
T Consensus 82 ~~F~sg--ytWGsVr~AdV~igge~ 104 (370)
T PF11925_consen 82 AQFASG--YTWGSVRTADVTIGGET 104 (370)
T ss_pred hhccCc--ccccceEEEEEEEcCee
Confidence 356775 56699999999999873
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.11 E-value=1.6 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=23.5
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
++|+|+.+ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 66787755 499999999999999986554
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.68 E-value=2.3 Score=33.37 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=25.3
Q ss_pred eEEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 320 ~i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
.+.|+|+.+. ++||||.+.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 3678888775 89999999999999987655
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=79.62 E-value=4 Score=34.19 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=27.0
Q ss_pred ccEEEeEeeEEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 312 ~~y~v~l~~i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
++|.+. +.|||+.+ .++||||.+.+.++++..+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 677655 66788754 599999999999999984443
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.17 E-value=3.2 Score=31.21 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=23.6
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
+.|+++.+. ++||||.+..+++.+..+.+
T Consensus 13 ~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 667776664 99999999999999985544
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.95 E-value=4.3 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.8
Q ss_pred cceEEEEEEeCCCCeEEEEEEECCCCceeEecC
Q 013680 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (438)
Q Consensus 107 ~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~ 139 (438)
...+++.+.|| ++.+..++|||++...|+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 35788899999 49999999999999988774
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=76.88 E-value=4.1 Score=32.41 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=21.7
Q ss_pred EEEEEeCCCCeEEEEEEECCCCceeEec
Q 013680 111 YTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 111 ~~~i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
+.+|.|. .+++.+++||||+.+-++.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecc
Confidence 3566777 5799999999999999976
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.72 E-value=5.9 Score=30.73 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred eEEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 320 ~i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
.+.||++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 366777655 499999999999999875443
No 40
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=68.32 E-value=7.5 Score=30.59 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEeCCCCeEEEEEEECCCCceeEec
Q 013680 114 IDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 114 i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
+.|+ .|.+.+.+|||+|.+-+..
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEcc
Confidence 4566 7999999999999999975
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.60 E-value=9.2 Score=29.68 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.3
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999986543
No 42
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=61.37 E-value=10 Score=31.71 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.4
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAE 353 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~ 353 (438)
+.|+|..+ .++||||.+.+.++++..++
T Consensus 21 ~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 21 VEINGVPV-----KAFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred EEECCEEE-----EEEEeCCCceEEeCHHHHHH
Confidence 55677655 48999999999999998544
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=58.09 E-value=6.9 Score=31.05 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.9
Q ss_pred eEEecCeEeecCCcceEEcccCccccccHHH
Q 013680 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEI 350 (438)
Q Consensus 320 ~i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~ 350 (438)
.|.++|+.+ .++||||...+.++.+.
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----EEEEecCCCcceecccc
Confidence 356667655 49999999999999886
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=56.11 E-value=16 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=17.4
Q ss_pred CeEEEEEEECCCCceeEec
Q 013680 120 NVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 120 ~q~~~v~~DTGS~~~Wv~~ 138 (438)
++++.+++|||++.+-+..
T Consensus 7 G~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 7 GVPIVFLVDTGATHSVLKS 25 (86)
T ss_pred CEEEEEEEECCCCeEEECH
Confidence 6899999999999999976
No 45
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=52.01 E-value=16 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.2
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l~ 355 (438)
+.++++ ....+.+|||.+.+.+|...|+.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 1235889999999999999977663
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.38 E-value=20 Score=30.19 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.6
Q ss_pred EEecCeEeecCCcceEEcccCccccccHHHHHHH
Q 013680 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 321 i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
+++||+.+. |+||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 678888775 99999999999999986553
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=43.75 E-value=62 Score=29.71 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=27.2
Q ss_pred CccEEEeEeeEEecCeEeecCCcceEEcccCccccccHHH
Q 013680 311 YDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEI 350 (438)
Q Consensus 311 ~~~y~v~l~~i~vg~~~~~~~~~~aiiDSGTs~t~Lp~~~ 350 (438)
.++|.++ .+|||+.+. .++|||.|.+.|+++.
T Consensus 103 ~GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~d 134 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-----FLVDTGATSVALNEED 134 (215)
T ss_pred CCcEEEE---EEECCEEEE-----EEEecCcceeecCHHH
Confidence 3778765 779999886 8999999999999886
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.62 E-value=21 Score=30.12 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=25.1
Q ss_pred eEEEEEEeCCCCeEEEEEEECCCCceeEecC-CCCCC
Q 013680 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCA 144 (438)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~-C~~C~ 144 (438)
..|+++.|+ .++++..+|||...+-+... +..|.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 578899999 69999999999999999876 34553
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=35.59 E-value=87 Score=28.81 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=57.4
Q ss_pred cCCCCceeeecccccceEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccc
Q 013680 93 PSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNV 172 (438)
Q Consensus 93 ~~~~~~~~~l~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~ 172 (438)
...|...+.+....+.-|+++..|- +|++..++|||-..+-++.. .-. .--||.+..
T Consensus 89 ~~~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~--dA~-------------RlGid~~~l------ 145 (215)
T COG3577 89 VGDGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE--DAR-------------RLGIDLNSL------ 145 (215)
T ss_pred CCCCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH--HHH-------------HhCCCcccc------
Confidence 3344456777777788899999987 79999999999998888651 100 122444322
Q ss_pred cCCCcCCCCCCCCCCCCCCCceeEecCCCCceEEEEEEEEEEEeccC
Q 013680 173 SCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASF 219 (438)
Q Consensus 173 ~C~~~~C~~~~~C~~~~~~c~y~~~Y~~g~s~~~G~l~~D~l~l~~~ 219 (438)
..++.+.-.+| ....-.+--|.+.|++.
T Consensus 146 ------------------~y~~~v~TANG-~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 146 ------------------DYTITVSTANG-RARAAPVTLDRVQIGGI 173 (215)
T ss_pred ------------------CCceEEEccCC-ccccceEEeeeEEEccE
Confidence 25566666665 34445677899999876
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.20 E-value=23 Score=29.63 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=17.4
Q ss_pred eEEcccCc-cccccHHHHHHH
Q 013680 335 ALVDSGAS-FTFLPTEIYAEV 354 (438)
Q Consensus 335 aiiDSGTs-~t~Lp~~~y~~l 354 (438)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999998 999999997665
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=34.94 E-value=47 Score=29.37 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.2
Q ss_pred EEEEEeCCCCeEEEEEEECCCCceeEec
Q 013680 111 YTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (438)
Q Consensus 111 ~~~i~iGTP~q~~~v~~DTGS~~~Wv~~ 138 (438)
...+.+++-..++++++||||..-.+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3456777778999999999999888866
No 52
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.33 E-value=28 Score=28.34 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=17.5
Q ss_pred cceEEcccCcccc-ccHHHHHHH
Q 013680 333 FQALVDSGASFTF-LPTEIYAEV 354 (438)
Q Consensus 333 ~~aiiDSGTs~t~-Lp~~~y~~l 354 (438)
..++||||.+... +|.++++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 4689999999776 999985543
No 53
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=28.81 E-value=64 Score=27.47 Aligned_cols=17 Identities=35% Similarity=0.767 Sum_probs=15.3
Q ss_pred ceEEcccCccccccHHH
Q 013680 334 QALVDSGASFTFLPTEI 350 (438)
Q Consensus 334 ~aiiDSGTs~t~Lp~~~ 350 (438)
.++||||.+-.++....
T Consensus 34 ~vLiDSGAThsFIs~~~ 50 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSF 50 (135)
T ss_pred EEEEecCCCcEEccHHH
Confidence 48999999999998886
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=26.72 E-value=3.5e+02 Score=24.10 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=17.9
Q ss_pred CcceEEcccCccccccHHHHHHH
Q 013680 332 GFQALVDSGASFTFLPTEIYAEV 354 (438)
Q Consensus 332 ~~~aiiDSGTs~t~Lp~~~y~~l 354 (438)
...+++|||+...+.-.++-+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 34599999999999888874443
No 55
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=25.22 E-value=96 Score=25.16 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEeCCC----CeEEEEEEECCCCcee-Eec
Q 013680 112 TWIDIGTP----NVSFLVALDAGSNLLW-VPC 138 (438)
Q Consensus 112 ~~i~iGTP----~q~~~v~~DTGS~~~W-v~~ 138 (438)
++|.|..| .-++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 46777777 3478899999998654 544
No 56
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.99 E-value=1.4e+02 Score=21.11 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=17.2
Q ss_pred ceEEcccCccccccHHHHHH
Q 013680 334 QALVDSGASFTFLPTEIYAE 353 (438)
Q Consensus 334 ~aiiDSGTs~t~Lp~~~y~~ 353 (438)
.+++|+|.+...+..+.+..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 58999999999999988654
Done!