Query 013681
Match_columns 438
No_of_seqs 259 out of 1838
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02534 mucon_cyclo muconate 100.0 1.5E-68 3.2E-73 543.1 40.0 357 67-431 1-367 (368)
2 cd03318 MLE Muconate Lactonizi 100.0 5.9E-68 1.3E-72 538.3 40.4 355 66-428 1-365 (365)
3 cd03317 NAAAR N-acylamino acid 100.0 1.1E-64 2.4E-69 512.3 40.8 346 70-428 1-354 (354)
4 cd03323 D-glucarate_dehydratas 100.0 7.5E-65 1.6E-69 518.8 38.6 350 66-431 1-390 (395)
5 cd03321 mandelate_racemase Man 100.0 2.9E-64 6.2E-69 509.2 37.2 346 65-429 1-354 (355)
6 cd03328 MR_like_3 Mandelate ra 100.0 8.4E-64 1.8E-68 504.8 37.2 340 66-424 1-352 (352)
7 PRK15072 bifunctional D-altron 100.0 5.1E-63 1.1E-67 507.6 40.1 344 65-432 1-387 (404)
8 cd03329 MR_like_4 Mandelate ra 100.0 8.2E-63 1.8E-67 500.9 39.1 345 66-429 1-368 (368)
9 PRK14017 galactonate dehydrata 100.0 1.1E-62 2.5E-67 502.1 37.3 341 65-432 1-363 (382)
10 cd03326 MR_like_1 Mandelate ra 100.0 1.1E-61 2.4E-66 493.4 39.6 339 70-430 3-383 (385)
11 cd03316 MR_like Mandelate race 100.0 1.1E-61 2.4E-66 491.0 37.9 340 66-420 1-357 (357)
12 cd03325 D-galactonate_dehydrat 100.0 9.1E-62 2E-66 490.3 36.6 330 66-422 1-352 (352)
13 cd03322 rpsA The starvation se 100.0 2.1E-61 4.6E-66 489.1 38.0 336 66-432 1-344 (361)
14 cd03327 MR_like_2 Mandelate ra 100.0 2.9E-60 6.3E-65 477.4 35.5 309 95-422 11-341 (341)
15 cd03324 rTSbeta_L-fuconate_deh 100.0 8.5E-60 1.8E-64 483.2 37.1 343 65-422 1-415 (415)
16 TIGR03247 glucar-dehydr glucar 100.0 1.4E-59 3E-64 484.3 38.7 350 65-430 4-406 (441)
17 COG4948 L-alanine-DL-glutamate 100.0 9.4E-60 2E-64 479.3 36.2 356 65-433 1-370 (372)
18 TIGR01928 menC_lowGC/arch o-su 100.0 2E-58 4.4E-63 460.9 36.1 316 73-401 1-322 (324)
19 PRK15129 L-Ala-D/L-Glu epimera 100.0 4.2E-57 9.1E-62 450.8 38.6 316 69-411 3-321 (321)
20 cd03319 L-Ala-DL-Glu_epimerase 100.0 9.2E-57 2E-61 447.9 39.7 311 69-391 1-314 (316)
21 PRK15440 L-rhamnonate dehydrat 100.0 1.2E-56 2.7E-61 456.9 36.6 317 90-431 53-392 (394)
22 cd03315 MLE_like Muconate lact 100.0 1.6E-54 3.4E-59 421.5 32.9 256 70-381 1-258 (265)
23 TIGR01927 menC_gamma/gm+ o-suc 100.0 9.1E-52 2E-56 409.6 31.2 287 73-391 1-294 (307)
24 cd03320 OSBS o-Succinylbenzoat 100.0 5.5E-52 1.2E-56 403.2 27.5 250 71-382 2-255 (263)
25 PRK05105 O-succinylbenzoate sy 100.0 7.3E-50 1.6E-54 398.5 32.2 295 68-398 2-302 (322)
26 PRK02714 O-succinylbenzoate sy 100.0 4.2E-49 9.1E-54 392.8 32.5 282 69-381 4-292 (320)
27 TIGR01502 B_methylAsp_ase meth 100.0 1.4E-48 3.1E-53 396.6 35.8 286 92-382 48-377 (408)
28 cd03314 MAL Methylaspartate am 100.0 1.7E-48 3.7E-53 392.0 31.3 288 93-384 12-343 (369)
29 PLN02980 2-oxoglutarate decarb 100.0 3.6E-48 7.8E-53 452.9 37.5 316 46-380 918-1266(1655)
30 cd00308 enolase_like Enolase-s 100.0 1.2E-47 2.6E-52 365.5 25.4 225 70-386 1-228 (229)
31 PRK02901 O-succinylbenzoate sy 100.0 4.8E-43 1E-47 348.5 31.0 287 71-433 13-306 (327)
32 PRK00077 eno enolase; Provisio 100.0 1.9E-37 4.2E-42 319.2 32.3 297 65-379 2-382 (425)
33 cd03313 enolase Enolase: Enola 100.0 7.9E-37 1.7E-41 313.1 28.7 281 93-381 13-382 (408)
34 TIGR01060 eno phosphopyruvate 100.0 4.6E-36 1E-40 309.0 30.3 283 93-381 15-385 (425)
35 PLN00191 enolase 100.0 3.6E-30 7.8E-35 265.2 33.1 297 65-381 26-416 (457)
36 PTZ00081 enolase; Provisional 100.0 9.5E-28 2.1E-32 246.4 33.1 296 65-382 2-403 (439)
37 COG1441 MenC O-succinylbenzoat 100.0 7.1E-29 1.5E-33 225.9 18.8 275 69-379 3-282 (321)
38 PF02746 MR_MLE_N: Mandelate r 99.9 3.8E-21 8.3E-26 164.2 16.1 115 68-188 2-117 (117)
39 PF13378 MR_MLE_C: Enolase C-t 99.8 1.1E-20 2.4E-25 159.7 10.2 106 310-420 1-111 (111)
40 COG0148 Eno Enolase [Carbohydr 99.8 4.3E-17 9.3E-22 160.4 25.5 283 93-382 18-382 (423)
41 PRK08350 hypothetical protein; 99.8 4.6E-17 9.9E-22 158.9 22.9 287 66-384 3-310 (341)
42 PF01188 MR_MLE: Mandelate rac 99.7 4.1E-16 8.8E-21 119.8 8.4 66 237-310 1-67 (67)
43 PTZ00378 hypothetical protein; 99.7 1.5E-13 3.2E-18 141.3 29.5 296 65-382 49-452 (518)
44 KOG2670 Enolase [Carbohydrate 99.6 4.9E-13 1.1E-17 128.1 20.1 248 127-383 67-394 (433)
45 COG3799 Mal Methylaspartate am 99.4 2.4E-11 5.2E-16 115.3 18.6 285 93-379 50-375 (410)
46 PF07476 MAAL_C: Methylasparta 99.3 1.2E-11 2.6E-16 113.5 13.0 186 192-382 4-218 (248)
47 PF00113 Enolase_C: Enolase, C 99.2 3.5E-10 7.6E-15 110.8 13.8 166 202-382 76-255 (295)
48 cd02801 DUS_like_FMN Dihydrour 99.0 9.3E-09 2E-13 97.7 16.3 143 185-334 46-213 (231)
49 cd02932 OYE_YqiM_FMN Old yello 99.0 7.4E-09 1.6E-13 104.3 14.3 121 207-333 155-319 (336)
50 cd04733 OYE_like_2_FMN Old yel 98.6 5.7E-07 1.2E-11 90.7 15.1 121 208-334 151-322 (338)
51 cd02803 OYE_like_FMN_family Ol 98.5 1.3E-06 2.9E-11 87.5 14.4 120 208-333 143-310 (327)
52 cd02930 DCR_FMN 2,4-dienoyl-Co 98.5 2E-06 4.3E-11 87.3 13.6 122 208-333 139-305 (353)
53 PF03952 Enolase_N: Enolase, N 98.1 8.8E-05 1.9E-09 64.5 14.0 95 93-187 16-132 (132)
54 PRK10550 tRNA-dihydrouridine s 97.4 0.0061 1.3E-07 60.8 16.3 144 192-339 61-229 (312)
55 PF05034 MAAL_N: Methylasparta 97.2 0.005 1.1E-07 54.1 11.3 95 93-187 50-153 (159)
56 PRK10415 tRNA-dihydrouridine s 97.1 0.015 3.3E-07 58.3 15.3 139 194-339 65-229 (321)
57 PF01207 Dus: Dihydrouridine s 96.9 0.012 2.7E-07 58.6 12.2 144 184-334 44-213 (309)
58 PRK11815 tRNA-dihydrouridine s 96.8 0.084 1.8E-06 53.2 17.7 144 185-336 56-235 (333)
59 cd02931 ER_like_FMN Enoate red 96.8 0.042 9E-07 56.5 15.5 124 209-334 153-335 (382)
60 COG0042 tRNA-dihydrouridine sy 96.7 0.052 1.1E-06 54.5 15.2 144 192-339 65-233 (323)
61 cd04734 OYE_like_3_FMN Old yel 96.6 0.076 1.6E-06 53.8 15.6 120 209-334 144-315 (343)
62 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.044 9.6E-07 53.9 13.3 134 193-334 98-272 (289)
63 TIGR00737 nifR3_yhdG putative 96.5 0.091 2E-06 52.6 15.7 143 186-335 55-223 (319)
64 TIGR00742 yjbN tRNA dihydrouri 96.4 0.15 3.4E-06 51.0 16.4 145 186-338 47-227 (318)
65 PRK07259 dihydroorotate dehydr 96.3 0.15 3.3E-06 50.4 15.3 132 194-335 92-264 (301)
66 TIGR00736 nifR3_rel_arch TIM-b 96.2 0.22 4.8E-06 47.5 15.3 132 193-334 67-220 (231)
67 PRK10605 N-ethylmaleimide redu 96.1 0.12 2.6E-06 52.7 13.9 122 209-333 162-320 (362)
68 COG1902 NemA NADH:flavin oxido 96.0 0.19 4E-06 51.3 14.7 125 209-333 152-317 (363)
69 PRK08255 salicylyl-CoA 5-hydro 96.0 0.15 3.2E-06 57.2 15.0 123 209-333 554-716 (765)
70 TIGR00735 hisF imidazoleglycer 95.9 0.19 4.1E-06 48.6 13.5 153 194-357 75-253 (254)
71 cd04747 OYE_like_5_FMN Old yel 95.8 0.27 5.8E-06 50.2 14.6 119 209-333 147-327 (361)
72 cd04740 DHOD_1B_like Dihydroor 95.7 0.41 9E-06 47.2 15.3 137 194-338 90-264 (296)
73 cd02933 OYE_like_FMN Old yello 95.6 0.29 6.4E-06 49.4 14.1 118 209-333 155-313 (338)
74 PRK13523 NADPH dehydrogenase N 95.5 0.24 5.3E-06 50.0 13.3 123 209-333 145-304 (337)
75 cd02911 arch_FMN Archeal FMN-b 95.3 0.76 1.6E-05 43.9 15.2 129 195-334 74-220 (233)
76 TIGR01037 pyrD_sub1_fam dihydr 95.3 0.57 1.2E-05 46.3 14.9 152 194-355 91-289 (300)
77 cd00377 ICL_PEPM Members of th 95.1 0.25 5.3E-06 47.6 11.2 103 201-310 79-202 (243)
78 cd02929 TMADH_HD_FMN Trimethyl 95.1 0.56 1.2E-05 48.0 14.3 125 209-334 153-319 (370)
79 PRK02083 imidazole glycerol ph 94.3 0.85 1.8E-05 44.0 13.0 153 194-357 75-251 (253)
80 cd04735 OYE_like_4_FMN Old yel 94.1 0.78 1.7E-05 46.6 12.7 117 209-330 147-309 (353)
81 PF00724 Oxidored_FMN: NADH:fl 93.7 0.41 8.9E-06 48.4 9.7 125 209-333 152-320 (341)
82 TIGR01182 eda Entner-Doudoroff 93.1 1.6 3.5E-05 40.8 11.8 94 259-366 18-113 (204)
83 cd04731 HisF The cyclase subun 92.8 3 6.6E-05 39.8 13.9 146 194-352 72-242 (243)
84 PRK12330 oxaloacetate decarbox 92.5 13 0.00029 39.6 19.0 177 204-386 25-230 (499)
85 cd03174 DRE_TIM_metallolyase D 92.4 5.6 0.00012 38.1 15.2 154 204-368 17-204 (265)
86 PRK14024 phosphoribosyl isomer 92.2 2.9 6.3E-05 40.1 12.8 133 194-337 76-225 (241)
87 PRK01033 imidazole glycerol ph 92.1 2.9 6.3E-05 40.5 12.8 129 194-333 75-225 (258)
88 PRK00748 1-(5-phosphoribosyl)- 92.0 4.4 9.6E-05 38.2 13.7 130 194-334 75-220 (233)
89 PRK06552 keto-hydroxyglutarate 91.7 8.5 0.00018 36.3 15.0 142 201-363 20-164 (213)
90 TIGR03572 WbuZ glycosyl amidat 91.6 4.5 9.7E-05 38.3 13.3 129 194-333 75-226 (232)
91 PRK09140 2-dehydro-3-deoxy-6-p 91.6 9.7 0.00021 35.6 15.2 143 201-363 17-160 (206)
92 PRK11320 prpB 2-methylisocitra 91.2 8.5 0.00018 38.1 15.0 110 193-309 78-207 (292)
93 PRK06015 keto-hydroxyglutarate 91.2 2.5 5.4E-05 39.5 10.6 95 259-367 14-110 (201)
94 TIGR02317 prpB methylisocitrat 91.0 8.4 0.00018 38.0 14.7 109 193-308 73-201 (285)
95 TIGR02319 CPEP_Pphonmut carbox 90.9 11 0.00023 37.5 15.4 151 193-354 77-255 (294)
96 TIGR02321 Pphn_pyruv_hyd phosp 90.9 15 0.00032 36.4 16.3 113 193-309 75-210 (290)
97 PRK12581 oxaloacetate decarbox 90.5 14 0.00031 39.0 16.6 176 204-386 33-236 (468)
98 COG0821 gcpE 1-hydroxy-2-methy 90.5 2.2 4.8E-05 42.5 9.9 70 290-365 64-134 (361)
99 PLN02617 imidazole glycerol ph 90.3 4 8.7E-05 43.9 12.6 157 194-357 315-536 (538)
100 PRK13585 1-(5-phosphoribosyl)- 90.2 7.2 0.00016 37.0 13.4 131 194-335 77-223 (241)
101 COG0106 HisA Phosphoribosylfor 90.2 7.4 0.00016 37.2 13.0 134 195-339 77-227 (241)
102 PRK05718 keto-hydroxyglutarate 90.1 2.4 5.2E-05 40.0 9.6 95 258-365 24-119 (212)
103 PLN02411 12-oxophytodienoate r 90.1 7.3 0.00016 40.2 14.0 122 209-333 168-341 (391)
104 PRK07114 keto-hydroxyglutarate 90.0 4.5 9.7E-05 38.4 11.4 99 259-367 25-125 (222)
105 cd04732 HisA HisA. Phosphorib 90.0 6.5 0.00014 37.1 12.7 129 194-334 74-219 (234)
106 PRK06552 keto-hydroxyglutarate 89.9 4 8.6E-05 38.5 11.0 94 259-366 23-121 (213)
107 PRK14042 pyruvate carboxylase 89.6 30 0.00066 37.7 18.7 163 204-370 24-213 (596)
108 COG0800 Eda 2-keto-3-deoxy-6-p 89.6 5.1 0.00011 37.6 11.1 93 259-365 23-117 (211)
109 TIGR01182 eda Entner-Doudoroff 89.0 20 0.00043 33.6 15.4 141 201-363 15-157 (204)
110 PF01081 Aldolase: KDPG and KH 88.8 4.7 0.0001 37.5 10.4 96 259-367 18-114 (196)
111 TIGR02320 PEP_mutase phosphoen 88.7 16 0.00035 36.0 14.6 105 203-309 89-216 (285)
112 PRK13587 1-(5-phosphoribosyl)- 88.2 11 0.00025 35.9 13.0 128 194-333 77-220 (234)
113 PRK14114 1-(5-phosphoribosyl)- 88.1 7.2 0.00016 37.5 11.5 131 198-339 78-229 (241)
114 cd02940 DHPD_FMN Dihydropyrimi 88.0 17 0.00037 35.9 14.6 132 194-338 100-285 (299)
115 KOG2335 tRNA-dihydrouridine sy 87.9 16 0.00036 36.8 14.1 152 193-355 73-268 (358)
116 PRK06015 keto-hydroxyglutarate 87.8 24 0.00052 33.0 14.4 140 202-363 12-153 (201)
117 PRK09282 pyruvate carboxylase 87.6 45 0.00097 36.5 18.5 164 203-371 23-214 (592)
118 cd04738 DHOD_2_like Dihydrooro 87.4 9.8 0.00021 38.2 12.6 133 194-334 129-309 (327)
119 TIGR00612 ispG_gcpE 1-hydroxy- 87.1 5.5 0.00012 39.9 10.2 96 260-363 33-130 (346)
120 cd07943 DRE_TIM_HOA 4-hydroxy- 87.0 9.4 0.0002 37.0 11.9 101 255-361 16-132 (263)
121 PRK14040 oxaloacetate decarbox 86.9 52 0.0011 36.0 19.2 164 203-371 24-215 (593)
122 cd07944 DRE_TIM_HOA_like 4-hyd 86.8 10 0.00022 37.0 11.9 104 255-361 14-129 (266)
123 PRK00366 ispG 4-hydroxy-3-meth 86.1 7 0.00015 39.5 10.4 96 260-363 41-139 (360)
124 PRK12331 oxaloacetate decarbox 85.9 50 0.0011 34.8 18.8 178 203-386 23-227 (448)
125 PF13714 PEP_mutase: Phosphoen 85.9 8.5 0.00018 36.9 10.7 136 193-337 69-222 (238)
126 cd06660 Aldo_ket_red Aldo-keto 85.9 34 0.00075 32.9 15.5 158 204-366 27-204 (285)
127 cd00452 KDPG_aldolase KDPG and 85.8 28 0.00061 31.8 15.0 138 202-362 12-151 (190)
128 cd06556 ICL_KPHMT Members of t 85.7 10 0.00023 36.3 11.2 95 204-309 87-196 (240)
129 TIGR03217 4OH_2_O_val_ald 4-hy 85.6 14 0.0003 37.4 12.5 102 255-361 18-134 (333)
130 TIGR03217 4OH_2_O_val_ald 4-hy 85.5 21 0.00045 36.1 13.7 141 213-356 94-246 (333)
131 TIGR01496 DHPS dihydropteroate 85.3 27 0.00057 33.9 13.9 64 203-266 20-94 (257)
132 cd00945 Aldolase_Class_I Class 85.1 28 0.00061 31.2 14.8 130 193-326 48-194 (201)
133 PRK12738 kbaY tagatose-bisphos 84.6 7.8 0.00017 38.2 9.9 57 301-358 71-132 (286)
134 cd03174 DRE_TIM_metallolyase D 84.2 25 0.00054 33.6 13.3 100 210-309 78-195 (265)
135 PRK06801 hypothetical protein; 84.1 9.5 0.00021 37.6 10.3 65 292-357 62-131 (286)
136 PRK05458 guanosine 5'-monophos 83.8 40 0.00086 34.0 14.7 121 207-335 97-231 (326)
137 PRK12999 pyruvate carboxylase; 83.8 57 0.0012 38.6 18.0 163 204-371 553-751 (1146)
138 PRK01130 N-acetylmannosamine-6 83.7 38 0.00083 31.6 14.9 116 210-338 79-206 (221)
139 cd04723 HisA_HisF Phosphoribos 83.7 24 0.00052 33.5 12.7 127 194-333 79-217 (233)
140 PRK07535 methyltetrahydrofolat 83.6 25 0.00054 34.2 12.9 147 203-361 22-196 (261)
141 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.1 48 0.001 32.3 17.8 177 204-386 19-222 (275)
142 PRK14041 oxaloacetate decarbox 82.9 68 0.0015 34.0 16.7 177 203-386 22-226 (467)
143 TIGR01858 tag_bisphos_ald clas 82.8 11 0.00024 37.1 10.1 57 301-358 69-130 (282)
144 PRK08195 4-hyroxy-2-oxovalerat 82.5 32 0.00069 34.8 13.6 141 213-356 95-247 (337)
145 cd00947 TBP_aldolase_IIB Tagat 82.3 12 0.00025 36.8 10.1 57 301-358 66-127 (276)
146 cd00739 DHPS DHPS subgroup of 82.0 51 0.0011 31.9 14.5 62 203-265 21-94 (257)
147 cd00381 IMPDH IMPDH: The catal 81.9 60 0.0013 32.6 15.5 119 208-334 95-226 (325)
148 PRK09195 gatY tagatose-bisphos 81.9 11 0.00025 37.0 9.9 57 301-358 71-132 (284)
149 COG0800 Eda 2-keto-3-deoxy-6-p 81.8 20 0.00044 33.7 10.9 143 200-363 19-162 (211)
150 PRK08649 inosine 5-monophospha 81.7 36 0.00077 34.9 13.7 103 261-371 141-273 (368)
151 TIGR00007 phosphoribosylformim 81.6 29 0.00062 32.6 12.4 128 194-333 73-217 (230)
152 cd04739 DHOD_like Dihydroorota 81.6 55 0.0012 32.8 15.0 155 194-356 100-294 (325)
153 PRK12737 gatY tagatose-bisphos 81.4 12 0.00025 37.0 9.8 56 302-358 72-132 (284)
154 TIGR01769 GGGP geranylgeranylg 81.3 10 0.00022 35.6 8.9 71 258-333 131-204 (205)
155 TIGR02090 LEU1_arch isopropylm 81.3 15 0.00033 37.4 11.0 99 256-361 17-132 (363)
156 PTZ00314 inosine-5'-monophosph 80.6 52 0.0011 35.2 15.0 106 249-363 229-353 (495)
157 PRK07565 dihydroorotate dehydr 80.5 57 0.0012 32.8 14.7 136 194-336 102-270 (334)
158 cd07940 DRE_TIM_IPMS 2-isoprop 80.5 21 0.00047 34.6 11.3 103 256-364 15-137 (268)
159 TIGR01304 IMP_DH_rel_2 IMP deh 80.4 73 0.0016 32.7 16.8 106 209-332 102-214 (369)
160 PRK12331 oxaloacetate decarbox 80.3 38 0.00083 35.6 13.7 99 211-309 101-202 (448)
161 PRK05286 dihydroorotate dehydr 80.2 15 0.00033 37.1 10.5 136 194-335 138-319 (344)
162 PRK06806 fructose-bisphosphate 80.2 17 0.00037 35.7 10.5 56 302-358 72-132 (281)
163 TIGR01859 fruc_bis_ald_ fructo 80.0 22 0.00047 35.0 11.2 56 302-358 71-132 (282)
164 PLN02858 fructose-bisphosphate 80.0 18 0.0004 43.4 12.5 102 254-358 1118-1227(1378)
165 PF00977 His_biosynth: Histidi 79.8 5.3 0.00012 37.9 6.7 128 194-333 74-219 (229)
166 PTZ00314 inosine-5'-monophosph 79.7 91 0.002 33.3 16.6 121 209-339 243-378 (495)
167 PF00682 HMGL-like: HMGL-like 79.4 16 0.00035 34.4 9.9 106 204-309 65-186 (237)
168 cd07944 DRE_TIM_HOA_like 4-hyd 79.0 31 0.00068 33.5 11.9 93 216-309 92-188 (266)
169 PRK08195 4-hyroxy-2-oxovalerat 78.9 30 0.00065 34.9 12.1 100 255-361 19-135 (337)
170 CHL00200 trpA tryptophan synth 78.9 67 0.0014 31.3 14.2 102 194-297 17-165 (263)
171 PRK09234 fbiC FO synthase; Rev 78.7 11 0.00023 42.9 9.6 126 204-362 558-687 (843)
172 TIGR01302 IMP_dehydrog inosine 78.6 52 0.0011 34.6 14.2 126 207-336 224-358 (450)
173 PF01081 Aldolase: KDPG and KH 78.5 36 0.00078 31.7 11.5 142 200-363 14-157 (196)
174 cd07937 DRE_TIM_PC_TC_5S Pyruv 78.1 32 0.00069 33.6 11.7 101 209-309 94-197 (275)
175 PRK07807 inosine 5-monophospha 77.9 15 0.00034 38.9 10.0 117 207-334 227-359 (479)
176 PRK05835 fructose-bisphosphate 77.9 19 0.00042 35.8 10.1 56 302-358 71-132 (307)
177 COG0107 HisF Imidazoleglycerol 77.4 40 0.00086 32.2 11.3 153 194-357 75-253 (256)
178 cd02812 PcrB_like PcrB_like pr 77.3 19 0.00042 34.1 9.5 80 251-335 125-205 (219)
179 PRK07709 fructose-bisphosphate 77.0 24 0.00052 34.8 10.4 54 304-358 77-135 (285)
180 PRK08185 hypothetical protein; 76.9 21 0.00046 35.1 10.0 56 302-358 66-126 (283)
181 PLN02446 (5-phosphoribosyl)-5- 76.8 51 0.0011 32.1 12.4 131 210-347 95-257 (262)
182 cd04722 TIM_phosphate_binding 76.3 54 0.0012 28.9 13.0 133 194-333 58-198 (200)
183 PRK12857 fructose-1,6-bisphosp 76.3 22 0.00048 35.0 9.9 56 302-358 72-132 (284)
184 PRK09195 gatY tagatose-bisphos 75.7 28 0.00061 34.3 10.5 132 193-335 74-233 (284)
185 TIGR00167 cbbA ketose-bisphosp 75.7 27 0.00058 34.5 10.4 56 302-358 73-135 (288)
186 TIGR03128 RuMP_HxlA 3-hexulose 75.6 17 0.00037 33.5 8.7 96 257-360 8-108 (206)
187 PRK07709 fructose-bisphosphate 75.2 40 0.00087 33.2 11.4 132 194-336 78-235 (285)
188 cd00956 Transaldolase_FSA Tran 75.0 74 0.0016 29.8 12.8 109 236-356 41-157 (211)
189 PRK06801 hypothetical protein; 75.0 71 0.0015 31.5 13.2 120 212-338 90-237 (286)
190 PRK07998 gatY putative fructos 75.0 48 0.001 32.7 11.9 116 213-336 91-231 (283)
191 TIGR01520 FruBisAldo_II_A fruc 74.9 88 0.0019 31.9 13.9 58 301-358 96-170 (357)
192 PRK04165 acetyl-CoA decarbonyl 74.8 70 0.0015 33.7 13.6 127 203-344 102-242 (450)
193 PRK09140 2-dehydro-3-deoxy-6-p 74.7 46 0.001 31.1 11.3 93 259-365 20-115 (206)
194 PRK08508 biotin synthase; Prov 74.6 64 0.0014 31.5 12.8 150 203-353 40-216 (279)
195 COG0159 TrpA Tryptophan syntha 74.4 89 0.0019 30.5 14.3 161 196-362 21-235 (265)
196 TIGR01919 hisA-trpF 1-(5-phosp 74.1 47 0.001 31.8 11.5 131 195-336 76-227 (243)
197 cd04729 NanE N-acetylmannosami 74.1 77 0.0017 29.6 14.0 111 210-335 83-207 (219)
198 PF00682 HMGL-like: HMGL-like 73.9 80 0.0017 29.7 13.8 175 204-386 12-211 (237)
199 PRK07998 gatY putative fructos 73.8 24 0.00053 34.7 9.5 55 302-357 72-131 (283)
200 TIGR03128 RuMP_HxlA 3-hexulose 73.6 44 0.00096 30.7 10.9 123 200-337 6-136 (206)
201 PRK03620 5-dehydro-4-deoxygluc 73.6 98 0.0021 30.6 16.8 149 204-361 26-190 (303)
202 PRK12737 gatY tagatose-bisphos 73.6 45 0.00096 32.9 11.3 118 212-336 90-234 (284)
203 TIGR01521 FruBisAldo_II_B fruc 73.2 30 0.00065 35.1 10.1 56 302-358 70-138 (347)
204 TIGR01302 IMP_dehydrog inosine 73.2 1.1E+02 0.0023 32.3 14.8 111 248-363 211-336 (450)
205 PRK15063 isocitrate lyase; Pro 73.1 1.2E+02 0.0027 31.6 15.5 103 194-299 147-300 (428)
206 PRK04128 1-(5-phosphoribosyl)- 73.0 87 0.0019 29.7 13.8 125 193-333 73-210 (228)
207 PRK14041 oxaloacetate decarbox 72.8 72 0.0016 33.8 13.3 98 212-309 101-201 (467)
208 PRK09282 pyruvate carboxylase 72.7 62 0.0013 35.4 13.2 36 236-271 158-193 (592)
209 cd00954 NAL N-Acetylneuraminic 72.5 1E+02 0.0022 30.2 14.4 149 204-361 19-188 (288)
210 TIGR01303 IMP_DH_rel_1 IMP deh 72.4 1.1E+02 0.0023 32.6 14.6 118 207-334 225-357 (475)
211 PRK07114 keto-hydroxyglutarate 72.3 90 0.002 29.6 14.2 140 202-363 23-167 (222)
212 PRK06843 inosine 5-monophospha 72.2 47 0.001 34.5 11.5 128 194-334 142-285 (404)
213 PRK02048 4-hydroxy-3-methylbut 72.0 1.3E+02 0.0029 32.7 15.0 163 203-379 38-223 (611)
214 PRK07315 fructose-bisphosphate 71.9 44 0.00095 33.1 10.9 53 304-357 77-133 (293)
215 PF04131 NanE: Putative N-acet 71.9 60 0.0013 30.0 10.9 109 209-331 54-171 (192)
216 cd04741 DHOD_1A_like Dihydroor 71.9 1.1E+02 0.0023 30.2 14.5 138 194-338 92-276 (294)
217 PRK12330 oxaloacetate decarbox 71.8 72 0.0016 34.1 13.0 102 209-310 100-206 (499)
218 TIGR02129 hisA_euk phosphoribo 71.4 54 0.0012 31.8 11.0 129 194-335 77-234 (253)
219 PRK05567 inosine 5'-monophosph 71.2 1.1E+02 0.0025 32.4 14.6 114 247-365 214-342 (486)
220 cd04726 KGPDC_HPS 3-Keto-L-gul 71.1 28 0.0006 31.8 8.9 101 248-359 3-108 (202)
221 PRK09196 fructose-1,6-bisphosp 70.9 51 0.0011 33.5 11.2 56 302-358 72-140 (347)
222 PRK08610 fructose-bisphosphate 70.5 52 0.0011 32.5 11.0 132 194-336 78-235 (286)
223 PRK13399 fructose-1,6-bisphosp 70.4 49 0.0011 33.6 10.9 56 302-358 72-140 (347)
224 cd06557 KPHMT-like Ketopantoat 70.3 28 0.0006 33.8 8.9 95 203-308 87-197 (254)
225 PRK08610 fructose-bisphosphate 70.3 47 0.001 32.8 10.6 53 305-358 78-135 (286)
226 KOG2550 IMP dehydrogenase/GMP 70.2 46 0.00099 34.4 10.5 57 305-363 293-363 (503)
227 PRK07455 keto-hydroxyglutarate 70.2 88 0.0019 28.6 13.4 139 202-363 20-161 (187)
228 PLN02274 inosine-5'-monophosph 70.1 96 0.0021 33.2 13.7 116 208-335 249-381 (505)
229 PF00290 Trp_syntA: Tryptophan 70.0 49 0.0011 32.2 10.5 92 194-285 12-151 (259)
230 TIGR01858 tag_bisphos_ald clas 69.9 58 0.0013 32.1 11.1 119 212-337 88-233 (282)
231 PLN02591 tryptophan synthase 69.3 1.1E+02 0.0024 29.5 15.3 90 197-286 7-143 (250)
232 PRK00694 4-hydroxy-3-methylbut 69.1 1.5E+02 0.0033 32.1 14.5 161 203-377 42-225 (606)
233 PRK13361 molybdenum cofactor b 69.1 87 0.0019 31.3 12.6 135 203-359 45-188 (329)
234 PRK13111 trpA tryptophan synth 69.0 1.2E+02 0.0025 29.5 14.7 160 194-363 14-209 (258)
235 PRK05718 keto-hydroxyglutarate 69.0 1E+02 0.0022 28.9 14.3 141 201-363 22-164 (212)
236 TIGR01108 oadA oxaloacetate de 68.9 79 0.0017 34.5 12.9 99 211-309 96-197 (582)
237 PRK08318 dihydropyrimidine deh 68.5 1E+02 0.0022 31.9 13.4 154 194-355 100-309 (420)
238 PRK14042 pyruvate carboxylase 67.9 67 0.0014 35.1 12.1 104 205-310 94-203 (596)
239 PRK12857 fructose-1,6-bisphosp 67.5 62 0.0013 31.9 10.8 133 193-336 74-234 (284)
240 TIGR00612 ispG_gcpE 1-hydroxy- 67.3 1.5E+02 0.0032 30.0 15.8 145 203-367 31-177 (346)
241 cd07939 DRE_TIM_NifV Streptomy 67.2 76 0.0017 30.5 11.4 71 238-308 116-186 (259)
242 cd07948 DRE_TIM_HCS Saccharomy 66.8 91 0.002 30.3 11.8 99 256-361 17-132 (262)
243 PRK11858 aksA trans-homoaconit 66.7 1.1E+02 0.0024 31.4 12.9 100 257-363 22-138 (378)
244 cd07948 DRE_TIM_HCS Saccharomy 66.3 83 0.0018 30.6 11.4 49 259-307 139-187 (262)
245 PLN02495 oxidoreductase, actin 66.2 77 0.0017 32.7 11.6 73 235-309 101-187 (385)
246 PF01116 F_bP_aldolase: Fructo 66.2 15 0.00034 36.2 6.3 56 302-358 71-131 (287)
247 TIGR01108 oadA oxaloacetate de 65.3 2.1E+02 0.0046 31.2 19.2 165 203-372 18-210 (582)
248 cd00951 KDGDH 5-dehydro-4-deox 65.2 1.4E+02 0.0031 29.2 16.9 149 204-361 19-183 (289)
249 PRK12738 kbaY tagatose-bisphos 65.2 68 0.0015 31.7 10.6 119 212-337 90-235 (286)
250 PLN02274 inosine-5'-monophosph 64.5 1.6E+02 0.0034 31.6 13.9 109 249-365 236-362 (505)
251 PRK05096 guanosine 5'-monophos 64.4 1.7E+02 0.0036 29.7 18.2 128 203-362 79-221 (346)
252 COG0042 tRNA-dihydrouridine sy 64.4 27 0.00058 35.1 7.8 75 194-270 137-220 (323)
253 PRK12928 lipoyl synthase; Prov 64.0 1.5E+02 0.0034 29.1 14.2 155 203-363 87-280 (290)
254 PF05913 DUF871: Bacterial pro 63.4 54 0.0012 33.4 9.8 142 204-358 12-173 (357)
255 COG1167 ARO8 Transcriptional r 63.3 27 0.00059 36.7 8.0 96 260-361 164-267 (459)
256 PF04551 GcpE: GcpE protein; 63.2 28 0.0006 35.3 7.4 58 302-362 72-139 (359)
257 TIGR00167 cbbA ketose-bisphosp 63.1 77 0.0017 31.3 10.6 134 193-336 77-238 (288)
258 cd00956 Transaldolase_FSA Tran 63.0 71 0.0015 29.9 9.9 128 196-336 54-187 (211)
259 PLN02925 4-hydroxy-3-methylbut 62.6 2.3E+02 0.005 31.5 14.7 145 203-361 107-272 (733)
260 PRK07107 inosine 5-monophospha 62.5 2.2E+02 0.0047 30.5 14.6 97 259-363 239-361 (502)
261 PRK00311 panB 3-methyl-2-oxobu 62.0 58 0.0013 31.7 9.4 95 203-308 90-200 (264)
262 cd00947 TBP_aldolase_IIB Tagat 62.0 84 0.0018 30.8 10.5 132 193-335 69-227 (276)
263 PF00248 Aldo_ket_red: Aldo/ke 61.9 1.4E+02 0.0031 28.6 12.3 160 203-367 14-194 (283)
264 PRK00366 ispG 4-hydroxy-3-meth 61.9 1.9E+02 0.0041 29.5 16.3 151 203-376 39-197 (360)
265 PRK07084 fructose-bisphosphate 61.4 66 0.0014 32.3 9.8 54 304-358 85-143 (321)
266 PRK09197 fructose-bisphosphate 60.5 2E+02 0.0043 29.3 13.7 57 302-358 90-163 (350)
267 PRK12581 oxaloacetate decarbox 60.3 1.5E+02 0.0032 31.5 12.6 70 202-272 128-203 (468)
268 TIGR02660 nifV_homocitr homoci 60.2 1.9E+02 0.0041 29.5 13.2 101 257-364 19-136 (365)
269 PRK08185 hypothetical protein; 59.7 1.6E+02 0.0036 28.9 12.1 135 193-337 68-231 (283)
270 cd07943 DRE_TIM_HOA 4-hydroxy- 59.5 1.7E+02 0.0037 28.2 18.1 173 204-386 20-215 (263)
271 cd00408 DHDPS-like Dihydrodipi 59.4 1.7E+02 0.0037 28.2 17.5 149 204-361 16-183 (281)
272 cd00452 KDPG_aldolase KDPG and 59.0 1.2E+02 0.0027 27.6 10.6 91 259-363 14-106 (190)
273 TIGR00510 lipA lipoate synthas 58.6 1.1E+02 0.0023 30.5 10.8 160 204-363 92-283 (302)
274 COG0656 ARA1 Aldo/keto reducta 58.1 2E+02 0.0042 28.4 13.1 150 204-364 26-193 (280)
275 TIGR00696 wecB_tagA_cpsF bacte 57.8 1.3E+02 0.0028 27.4 10.4 78 206-286 35-112 (177)
276 PRK08508 biotin synthase; Prov 57.5 1.3E+02 0.0028 29.4 11.1 20 340-359 136-155 (279)
277 TIGR01235 pyruv_carbox pyruvat 57.4 1.1E+02 0.0024 36.2 12.1 129 205-334 623-764 (1143)
278 PF01136 Peptidase_U32: Peptid 56.7 95 0.0021 29.1 9.8 78 207-297 3-80 (233)
279 TIGR00284 dihydropteroate synt 56.4 2.8E+02 0.0061 29.7 16.6 140 206-361 165-318 (499)
280 PRK15108 biotin synthase; Prov 56.3 1.4E+02 0.003 30.2 11.4 102 258-362 76-192 (345)
281 COG0821 gcpE 1-hydroxy-2-methy 56.3 2.3E+02 0.005 28.7 16.2 154 204-377 34-191 (361)
282 TIGR00973 leuA_bact 2-isopropy 56.2 89 0.0019 33.4 10.4 118 253-376 11-152 (494)
283 PRK00278 trpC indole-3-glycero 56.0 68 0.0015 31.0 8.8 76 281-361 92-167 (260)
284 TIGR03249 KdgD 5-dehydro-4-deo 55.8 2.1E+02 0.0046 28.1 16.7 148 204-360 24-187 (296)
285 cd02809 alpha_hydroxyacid_oxid 55.2 2.2E+02 0.0047 28.0 14.3 102 259-368 127-241 (299)
286 PF00478 IMPDH: IMP dehydrogen 55.1 2.5E+02 0.0054 28.7 15.1 128 230-363 71-220 (352)
287 PF00809 Pterin_bind: Pterin b 54.9 1.3E+02 0.0027 28.1 10.1 93 204-309 17-121 (210)
288 PRK05835 fructose-bisphosphate 54.4 1.6E+02 0.0035 29.4 11.1 114 194-317 75-217 (307)
289 PRK05481 lipoyl synthase; Prov 54.3 2.2E+02 0.0049 27.9 14.9 157 203-363 80-272 (289)
290 PLN02389 biotin synthase 54.3 1.7E+02 0.0037 30.1 11.7 23 340-362 212-234 (379)
291 COG5016 Pyruvate/oxaloacetate 53.7 1.5E+02 0.0032 30.9 10.7 163 204-371 26-216 (472)
292 cd00381 IMPDH IMPDH: The catal 53.4 2.5E+02 0.0054 28.2 14.9 59 305-365 136-208 (325)
293 PLN02389 biotin synthase 53.2 2.7E+02 0.0059 28.6 13.3 144 203-354 116-296 (379)
294 cd00453 FTBP_aldolase_II Fruct 53.2 67 0.0014 32.5 8.2 57 302-358 83-156 (340)
295 PRK12999 pyruvate carboxylase; 52.9 98 0.0021 36.7 10.8 150 205-355 625-791 (1146)
296 cd00331 IGPS Indole-3-glycerol 52.7 1.3E+02 0.0028 27.9 9.9 94 261-361 31-128 (217)
297 PRK05692 hydroxymethylglutaryl 52.4 1.2E+02 0.0027 29.7 10.1 93 257-358 22-137 (287)
298 PRK13957 indole-3-glycerol-pho 52.1 1.5E+02 0.0032 28.6 10.2 93 264-361 64-158 (247)
299 COG2513 PrpB PEP phosphonomuta 51.7 2.5E+02 0.0054 27.7 13.8 139 193-337 78-237 (289)
300 PRK07455 keto-hydroxyglutarate 51.7 1.3E+02 0.0029 27.4 9.6 92 259-362 22-113 (187)
301 COG0191 Fba Fructose/tagatose 51.5 68 0.0015 31.6 7.8 56 302-358 73-133 (286)
302 PLN02925 4-hydroxy-3-methylbut 51.4 98 0.0021 34.3 9.7 59 302-363 151-232 (733)
303 PRK05567 inosine 5'-monophosph 51.2 3.3E+02 0.0071 28.9 14.8 117 209-335 230-361 (486)
304 PRK07315 fructose-bisphosphate 51.2 2.6E+02 0.0056 27.7 14.4 137 193-338 77-236 (293)
305 PLN02321 2-isopropylmalate syn 51.0 1.5E+02 0.0032 32.8 11.1 104 257-362 104-232 (632)
306 COG0269 SgbH 3-hexulose-6-phos 49.9 1.9E+02 0.0041 27.4 10.1 114 212-335 73-193 (217)
307 COG1060 ThiH Thiamine biosynth 49.4 79 0.0017 32.4 8.3 127 203-362 90-220 (370)
308 PRK07084 fructose-bisphosphate 49.1 2.3E+02 0.005 28.5 11.3 112 193-312 85-225 (321)
309 TIGR00262 trpA tryptophan synt 49.0 2.5E+02 0.0055 27.0 15.1 101 195-297 13-161 (256)
310 PRK11858 aksA trans-homoaconit 49.0 3.1E+02 0.0068 28.0 19.2 158 204-370 24-204 (378)
311 TIGR01305 GMP_reduct_1 guanosi 48.8 3E+02 0.0066 27.9 17.4 129 203-363 78-221 (343)
312 PLN02746 hydroxymethylglutaryl 48.5 2.3E+02 0.0049 28.8 11.4 93 257-358 64-179 (347)
313 PF04551 GcpE: GcpE protein; 48.4 1.2E+02 0.0026 30.9 9.1 70 200-273 25-98 (359)
314 PF00218 IGPS: Indole-3-glycer 48.2 92 0.002 30.2 8.2 92 265-361 72-165 (254)
315 PRK06806 fructose-bisphosphate 47.7 2.8E+02 0.0062 27.2 13.8 121 211-338 89-234 (281)
316 PRK07094 biotin synthase; Prov 46.7 2.4E+02 0.0051 27.9 11.3 21 340-360 164-184 (323)
317 PLN02746 hydroxymethylglutaryl 46.3 2.2E+02 0.0049 28.9 10.9 17 96-112 48-64 (347)
318 TIGR01859 fruc_bis_ald_ fructo 45.0 3.1E+02 0.0068 26.9 14.4 121 211-338 89-234 (282)
319 PRK14040 oxaloacetate decarbox 44.9 2.9E+02 0.0063 30.3 12.3 71 202-272 120-195 (593)
320 PRK00694 4-hydroxy-3-methylbut 44.8 1.6E+02 0.0034 32.0 9.8 60 302-364 86-168 (606)
321 TIGR01163 rpe ribulose-phospha 44.5 2.4E+02 0.0052 25.6 10.3 113 210-333 70-192 (210)
322 PRK13396 3-deoxy-7-phosphohept 44.4 3.2E+02 0.007 27.8 11.7 147 199-360 108-277 (352)
323 PRK05437 isopentenyl pyrophosp 44.2 3.6E+02 0.0078 27.4 14.0 99 235-334 108-217 (352)
324 cd07941 DRE_TIM_LeuA3 Desulfob 44.2 3.1E+02 0.0066 26.6 11.3 51 257-307 147-198 (273)
325 PF00701 DHDPS: Dihydrodipicol 44.0 3.1E+02 0.0068 26.6 14.8 148 204-360 20-186 (289)
326 KOG3857 Alcohol dehydrogenase, 43.9 1.6E+02 0.0035 30.0 9.1 124 304-430 72-200 (465)
327 TIGR02660 nifV_homocitr homoci 43.9 3.6E+02 0.0079 27.4 17.2 159 203-370 20-201 (365)
328 cd00946 FBP_aldolase_IIA Class 43.7 3.7E+02 0.008 27.4 12.4 121 212-335 116-276 (345)
329 PRK04452 acetyl-CoA decarbonyl 43.5 3.2E+02 0.0068 27.5 11.3 124 203-338 75-213 (319)
330 COG0502 BioB Biotin synthase a 43.2 3.7E+02 0.008 27.2 12.5 153 203-357 84-264 (335)
331 PRK13210 putative L-xylulose 5 43.1 3E+02 0.0066 26.2 11.4 22 341-362 133-154 (284)
332 TIGR00423 radical SAM domain p 43.0 86 0.0019 31.0 7.4 67 203-269 36-115 (309)
333 PRK02048 4-hydroxy-3-methylbut 42.9 1.5E+02 0.0033 32.3 9.4 60 302-364 82-164 (611)
334 PRK01033 imidazole glycerol ph 42.8 3.1E+02 0.0068 26.3 13.2 147 209-364 33-206 (258)
335 PRK00164 moaA molybdenum cofac 42.6 3.5E+02 0.0076 26.8 12.0 69 203-275 49-119 (331)
336 PRK09240 thiH thiamine biosynt 41.7 1.2E+02 0.0026 31.0 8.3 66 203-275 104-174 (371)
337 KOG0053 Cystathionine beta-lya 41.5 49 0.0011 34.3 5.4 70 261-337 150-223 (409)
338 PRK03170 dihydrodipicolinate s 41.5 3.4E+02 0.0075 26.4 12.3 136 204-347 20-174 (292)
339 PRK13586 1-(5-phosphoribosyl)- 41.2 3.2E+02 0.0069 25.9 12.2 126 195-333 75-217 (232)
340 PRK09389 (R)-citramalate synth 41.0 4E+02 0.0086 28.4 12.3 105 253-360 12-133 (488)
341 COG5016 Pyruvate/oxaloacetate 41.0 4.4E+02 0.0096 27.5 13.7 96 174-276 71-171 (472)
342 PRK06256 biotin synthase; Vali 40.8 2.4E+02 0.0053 28.0 10.4 22 340-361 186-207 (336)
343 cd00946 FBP_aldolase_IIA Class 40.1 2.4E+02 0.0052 28.7 10.0 56 302-358 85-158 (345)
344 PLN02951 Molybderin biosynthes 39.9 4.3E+02 0.0093 27.0 14.0 137 203-358 90-232 (373)
345 TIGR03849 arch_ComA phosphosul 39.7 35 0.00076 32.7 3.7 50 315-365 10-66 (237)
346 TIGR01521 FruBisAldo_II_B fruc 39.6 4.3E+02 0.0093 26.9 11.9 133 194-335 74-276 (347)
347 cd00739 DHPS DHPS subgroup of 39.2 1.4E+02 0.0031 28.8 8.1 96 258-361 21-127 (257)
348 TIGR00222 panB 3-methyl-2-oxob 39.2 3.8E+02 0.0082 26.2 11.9 93 203-308 89-199 (263)
349 PF01116 F_bP_aldolase: Fructo 39.1 2.6E+02 0.0056 27.6 9.9 133 193-334 73-235 (287)
350 PTZ00413 lipoate synthase; Pro 39.1 4.6E+02 0.01 27.2 13.2 159 202-363 176-371 (398)
351 PRK07360 FO synthase subunit 2 39.0 84 0.0018 32.1 6.7 71 203-276 91-175 (371)
352 TIGR03551 F420_cofH 7,8-dideme 38.9 1.8E+02 0.0038 29.3 9.0 71 203-276 70-153 (343)
353 smart00052 EAL Putative diguan 38.9 2E+02 0.0044 26.3 8.9 63 302-366 144-214 (241)
354 PRK08444 hypothetical protein; 38.8 1.5E+02 0.0032 30.2 8.4 49 203-251 80-132 (353)
355 PTZ00170 D-ribulose-5-phosphat 38.5 3.4E+02 0.0075 25.5 11.2 122 203-334 75-201 (228)
356 TIGR01290 nifB nitrogenase cof 38.3 1.5E+02 0.0032 31.2 8.6 63 203-265 60-128 (442)
357 cd04729 NanE N-acetylmannosami 38.3 3.3E+02 0.0071 25.2 14.3 145 201-363 22-186 (219)
358 PRK13398 3-deoxy-7-phosphohept 38.3 1.8E+02 0.004 28.3 8.7 103 259-373 39-153 (266)
359 PRK06256 biotin synthase; Vali 38.2 4.1E+02 0.0089 26.4 11.8 62 212-275 155-230 (336)
360 cd00958 DhnA Class I fructose- 38.2 3.4E+02 0.0074 25.4 13.2 120 204-332 74-212 (235)
361 cd00423 Pterin_binding Pterin 37.8 2E+02 0.0044 27.6 8.9 66 292-363 64-129 (258)
362 PRK11613 folP dihydropteroate 37.7 1.1E+02 0.0023 30.2 6.9 54 203-257 35-100 (282)
363 cd07940 DRE_TIM_IPMS 2-isoprop 37.6 3.8E+02 0.0082 25.8 18.7 163 204-370 18-205 (268)
364 PF02310 B12-binding: B12 bind 37.6 1.5E+02 0.0032 24.3 7.0 72 291-363 16-90 (121)
365 PRK00915 2-isopropylmalate syn 37.5 5.4E+02 0.012 27.5 13.0 124 253-379 14-158 (513)
366 COG3589 Uncharacterized conser 37.3 2.2E+02 0.0047 28.9 8.9 139 206-358 16-174 (360)
367 TIGR01692 HIBADH 3-hydroxyisob 37.3 2.8E+02 0.0061 26.9 10.0 75 248-335 83-158 (288)
368 TIGR02313 HpaI-NOT-DapA 2,4-di 37.2 4.1E+02 0.0089 26.0 16.5 149 204-360 19-187 (294)
369 TIGR01235 pyruv_carbox pyruvat 37.0 8E+02 0.017 29.3 18.8 162 205-371 552-749 (1143)
370 PF11590 DNAPolymera_Pol: DNA 36.8 35 0.00076 23.1 2.3 35 211-245 3-37 (41)
371 PRK07695 transcriptional regul 36.7 3.3E+02 0.0072 24.8 12.2 115 204-333 39-176 (201)
372 TIGR01520 FruBisAldo_II_A fruc 36.7 4.5E+02 0.0098 26.9 11.3 116 219-337 135-290 (357)
373 PRK10060 RNase II stability mo 36.6 3.6E+02 0.0077 29.8 11.7 123 252-381 499-633 (663)
374 PF00478 IMPDH: IMP dehydrogen 36.2 4.9E+02 0.011 26.6 12.4 141 193-339 96-245 (352)
375 TIGR01303 IMP_DH_rel_1 IMP deh 36.0 5.6E+02 0.012 27.2 15.6 110 249-363 213-337 (475)
376 cd02809 alpha_hydroxyacid_oxid 35.5 4.4E+02 0.0095 25.9 14.3 121 204-334 127-256 (299)
377 cd04731 HisF The cyclase subun 35.2 2.4E+02 0.0053 26.5 8.9 45 288-337 59-103 (243)
378 PRK04180 pyridoxal biosynthesi 35.0 1.6E+02 0.0034 29.2 7.5 41 288-333 191-233 (293)
379 TIGR01496 DHPS dihydropteroate 35.0 3.1E+02 0.0067 26.5 9.6 94 258-360 20-124 (257)
380 PRK07807 inosine 5-monophospha 34.8 5.8E+02 0.013 27.1 15.0 58 304-363 268-339 (479)
381 PLN02428 lipoic acid synthase 34.8 5.1E+02 0.011 26.4 15.0 156 204-363 131-323 (349)
382 PRK12290 thiE thiamine-phospha 34.6 5.7E+02 0.012 26.9 13.0 135 211-366 222-377 (437)
383 PRK09261 phospho-2-dehydro-3-d 33.7 4E+02 0.0087 27.1 10.3 123 248-380 54-206 (349)
384 PRK05927 hypothetical protein; 33.7 1E+02 0.0022 31.3 6.3 66 203-268 76-154 (350)
385 COG3280 TreY Maltooligosyl tre 33.6 90 0.0019 34.9 6.0 85 245-360 3-87 (889)
386 cd04727 pdxS PdxS is a subunit 33.4 2.4E+02 0.0053 27.7 8.5 41 288-333 182-224 (283)
387 PF01408 GFO_IDH_MocA: Oxidore 33.1 1.4E+02 0.003 24.3 6.2 105 235-360 13-119 (120)
388 TIGR00433 bioB biotin syntheta 33.0 4.6E+02 0.0099 25.3 11.7 68 203-275 62-134 (296)
389 TIGR03700 mena_SCO4494 putativ 32.8 1.5E+02 0.0032 30.0 7.4 66 203-268 79-157 (351)
390 PRK13307 bifunctional formalde 32.7 3.1E+02 0.0066 28.4 9.6 105 246-359 173-281 (391)
391 cd01229 PH_etc2 Epithelial cel 32.5 29 0.00062 29.5 1.7 46 14-71 30-75 (129)
392 COG1038 PycA Pyruvate carboxyl 32.3 7E+02 0.015 28.6 12.4 126 205-331 628-766 (1149)
393 cd02811 IDI-2_FMN Isopentenyl- 32.3 5.2E+02 0.011 25.8 15.6 98 236-334 101-209 (326)
394 TIGR00977 LeuA_rel 2-isopropyl 32.3 2.9E+02 0.0062 29.8 9.7 100 257-361 19-142 (526)
395 cd03332 LMO_FMN L-Lactate 2-mo 32.1 5.9E+02 0.013 26.3 14.3 74 288-367 241-321 (383)
396 COG0134 TrpC Indole-3-glycerol 31.9 1.6E+02 0.0035 28.5 7.0 96 258-361 66-163 (254)
397 cd04732 HisA HisA. Phosphorib 31.9 2.4E+02 0.0053 26.2 8.3 61 288-355 61-121 (234)
398 cd02940 DHPD_FMN Dihydropyrimi 31.8 5E+02 0.011 25.4 14.4 96 235-332 87-198 (299)
399 COG0667 Tas Predicted oxidored 31.6 98 0.0021 30.9 5.7 72 289-366 138-211 (316)
400 cd02810 DHOD_DHPD_FMN Dihydroo 31.6 4.8E+02 0.01 25.2 10.8 12 354-365 243-254 (289)
401 PRK08445 hypothetical protein; 31.2 1.7E+02 0.0037 29.6 7.4 69 204-275 74-155 (348)
402 COG2896 MoaA Molybdenum cofact 31.0 3.3E+02 0.0071 27.4 9.2 75 208-282 100-188 (322)
403 COG2200 Rtn c-di-GMP phosphodi 30.8 4.2E+02 0.0091 25.3 9.8 63 302-366 147-217 (256)
404 TIGR02666 moaA molybdenum cofa 30.5 3.1E+02 0.0067 27.3 9.2 52 231-282 138-190 (334)
405 COG2870 RfaE ADP-heptose synth 30.3 2.2E+02 0.0047 29.7 7.7 33 327-360 143-177 (467)
406 TIGR01305 GMP_reduct_1 guanosi 29.9 6.1E+02 0.013 25.8 14.3 122 209-334 109-241 (343)
407 PRK07028 bifunctional hexulose 29.8 6.5E+02 0.014 26.1 14.6 152 200-363 10-171 (430)
408 PF01645 Glu_synthase: Conserv 29.6 6.3E+02 0.014 25.9 12.7 112 202-334 184-303 (368)
409 TIGR00433 bioB biotin syntheta 29.3 5.3E+02 0.011 24.9 11.2 22 340-361 157-178 (296)
410 cd04726 KGPDC_HPS 3-Keto-L-gul 29.3 4.3E+02 0.0092 23.8 15.2 152 199-363 6-167 (202)
411 cd04736 MDH_FMN Mandelate dehy 28.7 2.4E+02 0.0051 28.9 7.9 71 288-366 224-301 (361)
412 cd06840 PLPDE_III_Bif_AspK_Dap 28.7 6.3E+02 0.014 25.6 14.0 133 203-357 17-172 (368)
413 cd07938 DRE_TIM_HMGL 3-hydroxy 28.6 5.5E+02 0.012 24.9 10.8 54 256-309 144-198 (274)
414 COG1453 Predicted oxidoreducta 28.5 6.7E+02 0.014 25.8 13.7 158 204-363 32-205 (391)
415 PRK15029 arginine decarboxylas 28.5 4.3E+02 0.0094 29.9 10.5 136 202-363 200-350 (755)
416 PRK00208 thiG thiazole synthas 28.4 5.5E+02 0.012 24.8 15.9 121 199-334 69-204 (250)
417 cd01948 EAL EAL domain. This d 28.4 4.2E+02 0.0091 24.1 9.2 61 303-365 144-212 (240)
418 cd07939 DRE_TIM_NifV Streptomy 28.1 5.4E+02 0.012 24.6 18.7 158 203-370 17-198 (259)
419 TIGR00736 nifR3_rel_arch TIM-b 27.6 4.3E+02 0.0092 25.2 9.0 59 208-268 150-211 (231)
420 KOG2964 Arginase family protei 27.6 2.4E+02 0.0053 28.1 7.3 62 235-297 265-344 (361)
421 cd04728 ThiG Thiazole synthase 27.4 5.7E+02 0.012 24.7 15.9 121 199-334 69-204 (248)
422 cd07941 DRE_TIM_LeuA3 Desulfob 27.1 5.8E+02 0.013 24.7 17.9 179 203-386 17-225 (273)
423 PRK14863 bifunctional regulato 26.9 2.2E+02 0.0048 27.9 7.2 73 289-366 124-197 (292)
424 TIGR01768 GGGP-family geranylg 26.8 4E+02 0.0087 25.3 8.6 69 258-334 132-208 (223)
425 TIGR03471 HpnJ hopanoid biosyn 26.2 3.7E+02 0.008 28.2 9.2 135 204-358 228-370 (472)
426 PRK13361 molybdenum cofactor b 25.8 4E+02 0.0087 26.5 9.0 74 211-285 106-193 (329)
427 cd00423 Pterin_binding Pterin 25.7 2.1E+02 0.0045 27.6 6.7 64 203-269 21-95 (258)
428 PRK09722 allulose-6-phosphate 25.7 5E+02 0.011 24.7 9.1 125 203-334 69-197 (229)
429 PRK08444 hypothetical protein; 25.5 4.3E+02 0.0093 26.9 9.1 28 335-362 183-210 (353)
430 PRK05234 mgsA methylglyoxal sy 25.4 3.5E+02 0.0076 23.6 7.4 98 249-360 6-112 (142)
431 PRK05443 polyphosphate kinase; 25.3 1.6E+02 0.0035 32.8 6.5 76 201-277 346-425 (691)
432 PRK07428 nicotinate-nucleotide 25.3 1.9E+02 0.0041 28.6 6.3 46 312-360 202-249 (288)
433 TIGR02351 thiH thiazole biosyn 25.2 2.6E+02 0.0057 28.4 7.6 66 203-275 103-173 (366)
434 cd00950 DHDPS Dihydrodipicolin 25.2 6.2E+02 0.013 24.4 16.2 135 204-345 19-171 (284)
435 PLN02460 indole-3-glycerol-pho 25.1 3.3E+02 0.0072 27.6 8.0 96 258-361 139-237 (338)
436 cd07945 DRE_TIM_CMS Leptospira 24.9 6.5E+02 0.014 24.5 10.1 42 231-272 146-187 (280)
437 KOG4141 DNA repair and recombi 24.6 1.1E+02 0.0024 28.6 4.2 43 61-111 82-128 (222)
438 PRK12755 phospho-2-dehydro-3-d 24.6 7.6E+02 0.017 25.2 10.9 123 248-380 55-207 (353)
439 PF05853 DUF849: Prokaryotic p 24.5 2.6E+02 0.0057 27.2 7.2 155 204-362 24-205 (272)
440 PF09872 DUF2099: Uncharacteri 24.4 3.3E+02 0.0072 26.3 7.4 58 212-271 155-213 (258)
441 COG2108 Uncharacterized conser 24.2 7.2E+02 0.016 25.2 10.0 124 234-361 123-250 (353)
442 TIGR03551 F420_cofH 7,8-dideme 24.1 5.1E+02 0.011 25.9 9.5 117 230-361 71-199 (343)
443 TIGR03700 mena_SCO4494 putativ 24.0 5.1E+02 0.011 26.1 9.4 24 340-363 187-210 (351)
444 PTZ00170 D-ribulose-5-phosphat 24.0 6.1E+02 0.013 23.8 13.5 132 199-339 12-153 (228)
445 PF10007 DUF2250: Uncharacteri 23.7 44 0.00095 27.2 1.3 44 232-275 7-50 (92)
446 cd06831 PLPDE_III_ODC_like_AZI 23.6 4.9E+02 0.011 26.7 9.4 136 203-358 18-167 (394)
447 COG2896 MoaA Molybdenum cofact 23.6 7E+02 0.015 25.1 10.0 135 203-357 43-183 (322)
448 PRK07107 inosine 5-monophospha 23.6 9.3E+02 0.02 25.8 13.5 123 206-334 241-381 (502)
449 TIGR00262 trpA tryptophan synt 23.5 6.7E+02 0.014 24.1 10.6 53 303-359 86-145 (256)
450 PRK13587 1-(5-phosphoribosyl)- 23.5 3.5E+02 0.0076 25.6 7.7 64 288-358 64-127 (234)
451 PRK13802 bifunctional indole-3 23.5 5E+02 0.011 29.1 9.7 92 265-361 74-167 (695)
452 TIGR00762 DegV EDD domain prot 23.4 4.4E+02 0.0096 25.4 8.6 69 204-272 63-150 (275)
453 TIGR02134 transald_staph trans 23.2 3.8E+02 0.0081 25.7 7.7 134 195-336 60-201 (236)
454 PRK12595 bifunctional 3-deoxy- 23.0 8.1E+02 0.018 24.9 12.7 145 202-361 128-294 (360)
455 PRK13355 bifunctional HTH-doma 22.9 4.3E+02 0.0094 28.0 9.1 93 261-360 218-320 (517)
456 TIGR02090 LEU1_arch isopropylm 22.8 8.1E+02 0.018 24.8 17.4 158 204-370 20-200 (363)
457 PF05690 ThiG: Thiazole biosyn 22.8 6.9E+02 0.015 24.1 12.9 126 198-334 68-204 (247)
458 PLN02979 glycolate oxidase 22.7 8.4E+02 0.018 25.0 15.9 75 287-367 210-291 (366)
459 TIGR01761 thiaz-red thiazoliny 22.7 1.1E+02 0.0024 31.0 4.3 50 272-326 88-137 (343)
460 KOG0259 Tyrosine aminotransfer 22.5 1.4E+02 0.0029 30.9 4.7 48 312-359 185-237 (447)
461 cd04724 Tryptophan_synthase_al 22.4 6.7E+02 0.015 23.8 14.0 88 197-285 5-140 (242)
462 PF00128 Alpha-amylase: Alpha 22.1 1.4E+02 0.003 28.5 4.7 33 327-360 38-71 (316)
463 KOG0780 Signal recognition par 21.9 4.4E+02 0.0094 27.5 8.1 77 193-269 156-239 (483)
464 cd00740 MeTr MeTr subgroup of 21.8 2.8E+02 0.0061 26.7 6.7 54 203-257 23-80 (252)
465 PRK02714 O-succinylbenzoate sy 21.6 40 0.00087 33.7 0.8 36 34-69 2-37 (320)
466 PRK07094 biotin synthase; Prov 21.6 7.8E+02 0.017 24.2 14.4 143 204-353 71-246 (323)
467 PRK08883 ribulose-phosphate 3- 21.5 6.4E+02 0.014 23.6 9.0 124 203-335 68-196 (220)
468 PF02581 TMP-TENI: Thiamine mo 21.4 2.9E+02 0.0063 24.8 6.4 45 318-363 17-65 (180)
469 TIGR00381 cdhD CO dehydrogenas 21.4 9.2E+02 0.02 25.0 14.5 124 217-349 151-293 (389)
470 TIGR03699 mena_SCO4550 menaqui 21.4 3E+02 0.0066 27.4 7.2 48 203-250 72-123 (340)
471 PLN02858 fructose-bisphosphate 21.2 7.4E+02 0.016 30.2 11.2 133 193-335 1169-1332(1378)
472 CHL00162 thiG thiamin biosynth 21.1 7.8E+02 0.017 24.0 13.9 125 199-334 77-218 (267)
473 cd00338 Ser_Recombinase Serine 20.8 2.9E+02 0.0064 22.9 6.1 42 320-361 58-102 (137)
474 COG0855 Ppk Polyphosphate kina 20.8 2E+02 0.0043 31.6 5.8 76 201-277 350-429 (696)
475 PF05861 PhnI: Bacterial phosp 20.7 51 0.0011 33.3 1.3 70 162-244 285-355 (358)
476 PLN02334 ribulose-phosphate 3- 20.5 7E+02 0.015 23.2 10.1 117 210-333 79-201 (229)
477 PRK07360 FO synthase subunit 2 20.5 6.4E+02 0.014 25.6 9.4 28 335-362 195-222 (371)
478 PRK12822 phospho-2-dehydro-3-d 20.4 9.3E+02 0.02 24.6 11.7 120 252-381 58-207 (356)
479 cd07938 DRE_TIM_HMGL 3-hydroxy 20.2 8E+02 0.017 23.8 10.0 55 204-258 147-204 (274)
480 COG2403 Predicted GTPase [Gene 20.2 2.4E+02 0.0053 29.1 5.9 59 302-363 60-118 (449)
481 PRK05096 guanosine 5'-monophos 20.2 9.2E+02 0.02 24.5 12.1 125 209-337 110-245 (346)
482 PRK09196 fructose-1,6-bisphosp 20.2 9.2E+02 0.02 24.5 12.0 130 194-335 76-278 (347)
483 cd01310 TatD_DNAse TatD like p 20.2 6.8E+02 0.015 23.0 9.7 19 344-362 133-153 (251)
484 COG1619 LdcA Uncharacterized p 20.1 2.6E+02 0.0057 28.0 6.2 62 204-268 24-95 (313)
485 PRK12344 putative alpha-isopro 20.1 1.1E+03 0.024 25.3 16.5 162 203-370 24-217 (524)
No 1
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=1.5e-68 Score=543.12 Aligned_cols=357 Identities=21% Similarity=0.329 Sum_probs=320.2
Q ss_pred EEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHH-HHHHH-HHhhHhcCCCCC
Q 013681 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 67 I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~-~i~~~l~g~~~~ 142 (438)
|++|+++.+++|++.||.++.++.+.++.++|||+|++|++||||+.+. |.++++..+. ...++ .++|.|.|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999875 4454433232 23344 489999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHh-hcCC
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC-KLGF 220 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf 220 (438)
+++.+|+.|.+.+.+. +.+++|||+||||+.||..|+|||+||||. ++++|+|++++..+++++.++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999887754433 458999999999999999999999999997 78999999988877776666666655 5899
Q ss_pred cEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 221 STLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 221 ~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
++||+|+|. ++++|+++|+++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.||+|+++|++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 378 GLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 378 al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
++++..+ .|+++++++.++++.+++.++||++.+|++||||+++|++++++|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~~~~~ 367 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVNFYRR 367 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHHHhhc
Confidence 9998776 47777777667788788899999999999999999999999999986
No 2
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.9e-68 Score=538.32 Aligned_cols=355 Identities=24% Similarity=0.351 Sum_probs=320.3
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHH-HHHHHH-HHhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK-ALVKVR-EACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~-~~~~~~-~i~~~l~g~~~ 141 (438)
+|++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+ .++++... ....++ .+.|.+.|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 689999999999999999999999999999999999999999999998764 34443322 233344 47899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC-
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG- 219 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G- 219 (438)
.+++.+|+.|++.+.++ +++++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999998755443 458999999999999999999999999997 78999999988888888888888889999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|++||+|+|. ++++|+++|+++|+. ++++.|++|||++|++++|++++++|+++++. |||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcc--eeeCCCCcccHHHHHHHHh
Confidence 9999999996 789999999999995 67999999999999999999999999999974 9999999999999999986
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+|+++|++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 377 ~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+++++..+ .|++++..+.++++..++.++||++.+|++||||+++|++.+++
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~ 365 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVRR 365 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhcC
Confidence 99998666 57777766667777778889999999999999999999999875
No 3
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.1e-64 Score=512.34 Aligned_cols=346 Identities=21% Similarity=0.361 Sum_probs=305.6
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHH-HHhhHhcCCCCCCHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVR-EACQFLRQSPPTTLN 145 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~-~i~~~l~g~~~~~~~ 145 (438)
++++.+++|+++|+.++.++.+.++.++|||+|++|++||||+.+. |+++++... ....++ .+.|.|.|+++.+.+
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 4678999999999999999999999999999999999999999965 556554333 233344 378999999999999
Q ss_pred HHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCH-HHHHHHHHHHhhcCCcEEE
Q 013681 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSP-AEASELASKYCKLGFSTLK 224 (438)
Q Consensus 146 ~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~-~~~~~~~~~~~~~Gf~~iK 224 (438)
++|+.|.+ +.+. +++++||||||||++||..|+|+|+||||.++++|+|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99999876 4443 568999999999999999999999999998899999999877665 8899999999999999999
Q ss_pred EecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 225 LNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 225 lKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
+|++. +.|+++|++||+..+++.|++|||++|++++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999756999999999999999985 8999999987 59999999999999999986 689
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~ 383 (438)
+||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.+|++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566654
Q ss_pred ee-ecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 384 YV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 384 ~~-e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+. +++... .+.++++.+++.++||++.+|++||||+++|++.+++
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~~ 354 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALKK 354 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhcC
Confidence 43 444332 4556777778889999999999999999999999874
No 4
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.5e-65 Score=518.85 Aligned_cols=350 Identities=16% Similarity=0.206 Sum_probs=303.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC-CCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP-TTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~-~~~ 144 (438)
||++++++++.+|++.||+++.++...++.++|||+||+|++||||+... .+. ...+.++++.+.|.++ .+.
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~---~~~~~~~~~~llg~~~~~~~ 73 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEA---LEALLEAARSLVGGDVFGAY 73 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHH---HHHHHHHhHHHhCCCcchhh
Confidence 69999999999999999999888777889999999999999999997531 112 2234567888888877 577
Q ss_pred HHHHHHHHHHCC--C-----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC---------
Q 013681 145 NFALDEIARILP--G-----------SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--------- 201 (438)
Q Consensus 145 ~~~~~~l~~~~~--g-----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--------- 201 (438)
+.+|+.|++... + ...+++++||||||||++||..|+|||+||||. ++++|+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~~ 153 (395)
T cd03323 74 LAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTD 153 (395)
T ss_pred HHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeecccccccc
Confidence 889999986531 1 134678999999999999999999999999996 88999998642
Q ss_pred ------------CCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 202 ------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|+..+++.|+||||++|++++|++++
T Consensus 154 ~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~ 233 (395)
T cd03323 154 LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLA 233 (395)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHH
Confidence 3478889889988875 699999999996 68899999999999778999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|++ ++ .|||||++ |+++|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 234 ~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 99999 87 49999998 8999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
+++|+++|+++++|++.||+|+++|++|++++++|..+ .|...++...++++.+++.++||++.+|++||||+++|+++
T Consensus 305 a~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~~ 384 (395)
T cd03323 305 AQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRDK 384 (395)
T ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHHH
Confidence 99999999999999999999999999999999998764 23222322223344567888999999999999999999999
Q ss_pred hhhccc
Q 013681 426 VSCTQV 431 (438)
Q Consensus 426 l~~~~~ 431 (438)
+++|++
T Consensus 385 l~~~~~ 390 (395)
T cd03323 385 LAKAHE 390 (395)
T ss_pred HHHHHH
Confidence 999975
No 5
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.9e-64 Score=509.25 Aligned_cols=346 Identities=20% Similarity=0.249 Sum_probs=301.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g~~~~~ 143 (438)
|+|++++++.+++|+++||.++.++.+..+.++|+|+|++|++||||+.. ++++..+ ....++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 68999999999999999999999999999999999999999999999653 2332222 22234568999999975 5
Q ss_pred HHHHHHHHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
.+.+|+.+.+.. .+ ....++++||||||||++||..|+|||+||||.++++|+|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666776665532 12 22357899999999999999999999999999988999999988888999999999999999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|++||+|+|. ++++|++++++||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ ++ +++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~--~~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLF--QE----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccch--HH----HHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999884 22 467999
Q ss_pred hhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 377 ~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
+++++..++|+.. +..+++..++.++||++.+|++||||+++|++++++|
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 354 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVRKY 354 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHHhh
Confidence 9999887766421 1223445668899999999999999999999999987
No 6
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=8.4e-64 Score=504.82 Aligned_cols=340 Identities=23% Similarity=0.294 Sum_probs=294.6
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~ 145 (438)
||++++++.+++|++.|+..+..+...+..++|+|+| +|++||||+. +.+..... ..+.+.|.|+|+++.+++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~-i~~~~~p~liG~d~~~~~ 73 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAAL-VDGLLAPVVEGRDALDPP 73 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHH-HHHHHHHHhcCCCcccHH
Confidence 6899999999999999997766666788899999998 7999999863 22211111 123578999999999999
Q ss_pred HHHHHHHHHC---C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--CCHHHHHHHHHHHhhcC
Q 013681 146 FALDEIARIL---P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYCKLG 219 (438)
Q Consensus 146 ~~~~~l~~~~---~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~~~G 219 (438)
.+|+.|++.. . +....++++||||||||++||..|+|||+||||.++++|+|.+++. .+++++.+++++++++|
T Consensus 74 ~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~G 153 (352)
T cd03328 74 AAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQG 153 (352)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHCC
Confidence 9999997742 1 1223468999999999999999999999999998899999988653 36888999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|+++|+|+|.+.++|+++++++|+ .++++.|+||||++|++++|++++++|+++++ .|+|||++++|+++|++|++
T Consensus 154 f~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~- 230 (352)
T cd03328 154 IPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE- 230 (352)
T ss_pred CCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh-
Confidence 999999999888999999999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred hccc--cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 299 ARDT--YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 299 ~r~~--~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ +++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .++++|+
T Consensus 231 ---~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~hl 301 (352)
T cd03328 231 ---RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAHV 301 (352)
T ss_pred ---hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHHH
Confidence 6 7799999999999999999999999999999999997 99999999999999999999974 3578999
Q ss_pred HhhcCCcceeecCCC-cccccCCCCCceeeeCcEEecCC-CCCccceeChh
Q 013681 376 AAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWT 424 (438)
Q Consensus 376 a~al~~~~~~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~-~pGlGv~ld~~ 424 (438)
+++++|..+.|+..+ ..+..+++.+++.++||++.+|+ +||||+++|+.
T Consensus 302 ~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~~ 352 (352)
T cd03328 302 ACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRAR 352 (352)
T ss_pred HHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCCC
Confidence 999999877775432 23334556677788999999988 79999999973
No 7
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=5.1e-63 Score=507.56 Aligned_cols=344 Identities=15% Similarity=0.181 Sum_probs=294.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~ 143 (438)
|||++++++.+ . ..++.++|||+|++|++||||+.+. ++.......+ +.++|.|.|+++.+
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~~~~~~~~~~l~p~l~G~d~~~ 62 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GRELAVASYLQDHVCPLLIGRDAHR 62 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchHHHHHHHHHHHHHHcCCCChhH
Confidence 79999999643 1 1134689999999999999998632 1111222223 45899999999999
Q ss_pred HHHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
++.+|+.|.+.. .+....++++||||||||++||..|+|||+||||. ++++|+|.+....+++++.+.+++++++|
T Consensus 63 ~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 142 (404)
T PRK15072 63 IEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLELG 142 (404)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 999999997632 22234568999999999999999999999999996 78999997655567888888899999999
Q ss_pred CcEEEEecCCC-----------------------------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHH
Q 013681 220 FSTLKLNVGRN-----------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (438)
Q Consensus 220 f~~iKlKvG~d-----------------------------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A 263 (438)
|++||+|+|.+ ++.|+++|++||+ .++++.|++|||++|++++|
T Consensus 143 f~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A 222 (404)
T PRK15072 143 YKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEA 222 (404)
T ss_pred CCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHHH
Confidence 99999999731 1345789999999 57999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHH
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~ 342 (438)
++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++
T Consensus 223 ~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 223 ARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred HHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 999999999987 49999999999999999986 68999999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCcccee
Q 013681 343 TLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~l 421 (438)
+++++++|+++|+++++|++. +|+++.+|++|+++++++..+.|++.+.....+++..++.++||++.+|++||||+++
T Consensus 297 ~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~ 376 (404)
T PRK15072 297 LRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDF 376 (404)
T ss_pred HHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCeeE
Confidence 999999999999999999765 7999999999999999998777776543334556667788999999999999999999
Q ss_pred Chhhhhhcccc
Q 013681 422 KWTIVSCTQVD 432 (438)
Q Consensus 422 d~~~l~~~~~~ 432 (438)
|++++++|.+.
T Consensus 377 d~~~l~~~~~~ 387 (404)
T PRK15072 377 DEKLAAKYPYE 387 (404)
T ss_pred CHHHHhhCCCc
Confidence 99999999653
No 8
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=8.2e-63 Score=500.92 Aligned_cols=345 Identities=16% Similarity=0.223 Sum_probs=298.0
Q ss_pred eEEEEEEEEEEeeccCCccc----CCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSL----GLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~----s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~ 141 (438)
+|++++++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . .. .....+.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~--~~--~~~~~~~l~p~liG~d~ 74 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V--TD--PALVDRFLKKVLIGQDP 74 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h--hH--HHHHHHHHHHhcCCCCh
Confidence 58999999999999998766 577888899999999999999999996431 1 11 11123457899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC-------CCHHHHHHHHHH
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-------VSPAEASELASK 214 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-------~~~~~~~~~~~~ 214 (438)
.+++++|+.|++.+.+. ..++++||||||||++||..|+|||+||||.++++|+|.+++. .+++++.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~~ 153 (368)
T cd03329 75 LDRERLWQDLWRLQRGL-TDRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEE 153 (368)
T ss_pred hHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHHH
Confidence 99999999998865553 2358999999999999999999999999998899999987632 388999999999
Q ss_pred HhhcCCcEEEEecCCC--chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 215 YCKLGFSTLKLNVGRN--ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG~d--~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
++++||+.||+|+|.+ +++|++++++||+ .|+++.|+||||++|++++|++++++|+++++ .|+|||++++|+++
T Consensus 154 ~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~ 231 (368)
T cd03329 154 CKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGF--FWYEDPLREASISS 231 (368)
T ss_pred HHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCC--CeEeCCCCchhHHH
Confidence 9999999999999753 6899999999999 57999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCC-HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~-~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .
T Consensus 232 ~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------~ 301 (368)
T cd03329 232 YRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------G 301 (368)
T ss_pred HHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------H
Confidence 999986 68999999999999 999999999999999999999997 99999999999999999999984 4
Q ss_pred HHHHHHHhhcCCcceeec--CCCcccccCC-----CCCceeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 370 GFALHLAAGLGCIKYVNL--NTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~--~~pl~~~~~~-----~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
+|++|+++++++..++|. +.|.....++ ..+++..+||++.+|++||||+++|+++++++
T Consensus 302 ~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 368 (368)
T cd03329 302 AANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIERN 368 (368)
T ss_pred HHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHhhC
Confidence 688999999999888763 3443321111 11234568999999999999999999999875
No 9
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=1.1e-62 Score=502.07 Aligned_cols=341 Identities=18% Similarity=0.236 Sum_probs=289.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++++.+.+. + ..++|+|+|++|++||||+.... +.. .....++.+.|.|.|+++.++
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~--~~~~~~~~~~p~l~G~d~~~~ 60 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RAR--TVEAAVHELADYLIGKDPRRI 60 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chH--HHHHHHHHHHHHhCCCCHHHH
Confidence 789999997651 1 13899999999999999986421 111 222234568999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+|+.|+.. ..+ ...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 61 ~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf 140 (382)
T PRK14017 61 EDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERGF 140 (382)
T ss_pred HHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999663 222 123568999999999999999999999999996 789999988777899999999999999999
Q ss_pred cEEEEecCC---------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChh
Q 013681 221 STLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (438)
Q Consensus 221 ~~iKlKvG~---------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~ 290 (438)
+.||+|+|. ++++|+++|+++|+ .+|+++|+||||++|+.++|++++++|+++++ .|||||++++|++
T Consensus 141 ~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~ 218 (382)
T PRK14017 141 TAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRP--MFIEEPVLPENAE 218 (382)
T ss_pred CEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCC--CeEECCCCcCCHH
Confidence 999999963 35889999999999 57899999999999999999999999999997 4999999999999
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|++
T Consensus 219 ~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~~ 293 (382)
T PRK14017 219 ALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIAL 293 (382)
T ss_pred HHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999998 9999999999999999999999865 8999
Q ss_pred HHHHHHHhhcCCcceeecC--CCcccccC---CCC--CceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 370 GFALHLAAGLGCIKYVNLN--TPFLLSED---PFV--GGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~--~pl~~~~~---~~~--~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+|++|+++++++..+.+.. ..+....+ .+. .++.++||++.+|++||||+++|+++|++|+..
T Consensus 294 aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l~~~~~~ 363 (382)
T PRK14017 294 AACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKVRERAKT 363 (382)
T ss_pred HHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHHHHhhhc
Confidence 9999999999886554421 11111111 111 457789999999999999999999999998754
No 10
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.1e-61 Score=493.40 Aligned_cols=339 Identities=20% Similarity=0.281 Sum_probs=288.1
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcC---C--cEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC--
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSN---G--CVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT-- 142 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~---G--~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~-- 142 (438)
++++.+++|+++||.++.++++.++.++|+|+||+ | ++||||+.. +. ........+.+.|.|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~~----~~~~~~i~~~~~p~LiG~dp~~~ 77 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-GR----YAQGGLLRERFIPRLLAAAPDSL 77 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-Cc----hhHHHHHHHHHHHHhcCCChHHh
Confidence 45678889999999999999999999999999998 9 999999862 11 111111124478999999998
Q ss_pred --------CHHHHHHHHHHHC--CCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC------CCceeeeeeeC----
Q 013681 143 --------TLNFALDEIARIL--PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIP---- 201 (438)
Q Consensus 143 --------~~~~~~~~l~~~~--~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~---- 201 (438)
+++.+|+.|+... .++ ....+++||||||||++||..|+|||+||||. ++++|+|.+.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~~ 157 (385)
T cd03326 78 LDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYP 157 (385)
T ss_pred hhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCCC
Confidence 4499999997632 122 23468999999999999999999999999984 46899998754
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
..+++++.+++++++++||+.||+|+|. ++++|+++++++|+ ++|++.|+||||++|++++|++++++|+++++ .|
T Consensus 158 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~ 235 (385)
T cd03326 158 GDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--RW 235 (385)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--CE
Confidence 3477888899999999999999999986 78899999999998 58999999999999999999999999999997 59
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc----cEEEecCCcch-HHHHHHHHHHHHHcC
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA----SVVNIKLAKFG-VLGTLQIIKATRKSG 354 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~----d~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (438)
||||++++|++++++|++ ++++||++||++.++.+++++++.+++ |++|+|++++| ++++++++++|+++|
T Consensus 236 iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~g 311 (385)
T cd03326 236 YEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHG 311 (385)
T ss_pred EECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcC
Confidence 999999999999999986 689999999999999999999999887 99999999997 999999999999999
Q ss_pred Ce---EEEccCCchhHHHHHHHHHHhhcCCcceee----cCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 355 LH---LMIDGMIETRLATGFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 355 i~---~~~~s~~es~ig~~a~~hla~al~~~~~~e----~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
++ +++|+ +..+++|+++++++. +++ ++.++ +.+.+++.++||++.+|++||||+|+|+++++
T Consensus 312 i~~~~~~pH~------~~~a~lhl~aa~~~~-~~e~~~~~~~~~----~~~~~~~~~~~G~i~~p~~PGlGield~~~~~ 380 (385)
T cd03326 312 WSRRRFFPHG------GHLMSLHIAAGLGLG-GNESYPDVFQPF----GGFADGCKVENGYVRLPDAPGIGFEGKAELAA 380 (385)
T ss_pred CCCceeecch------HHHHHHHHHhcCCCc-eeEEeccccchh----hhcCCCCceeCCEEECCCCCCCCcccCHHHHH
Confidence 98 77765 346788999988752 233 22332 22345677899999999999999999999999
Q ss_pred hcc
Q 013681 428 CTQ 430 (438)
Q Consensus 428 ~~~ 430 (438)
+|+
T Consensus 381 ~~~ 383 (385)
T cd03326 381 EMR 383 (385)
T ss_pred HHh
Confidence 986
No 11
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=1.1e-61 Score=491.03 Aligned_cols=340 Identities=22% Similarity=0.339 Sum_probs=302.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~~ 144 (438)
||++|+++.+++|++.| .++.+.++.++|+|+|++|++||||+.+.+. .+ .....+++ ++|.|.|+++.++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~--~~~~~l~~~~~p~l~G~~~~~~ 72 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PS--AVAAAIEDLLAPLLIGRDPLDI 72 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--ch--HHHHHHHHHHHHHccCCChHHH
Confidence 58999999999999998 5667788999999999999999999987543 11 12233454 8999999999999
Q ss_pred HHHHHHHHHHCCCC----hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCC--CHHHHHHHHHHHhh
Q 013681 145 NFALDEIARILPGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV--SPAEASELASKYCK 217 (438)
Q Consensus 145 ~~~~~~l~~~~~g~----~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~--~~~~~~~~~~~~~~ 217 (438)
+.+|+.|.+...++ ..+++++|||+||||++||..|+|||+||||. ++++|+|.+++.. +++++.+.++++++
T Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~ 152 (357)
T cd03316 73 ERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVA 152 (357)
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999998754322 34678999999999999999999999999998 8899999987655 68999999999999
Q ss_pred cCCcEEEEecCCC------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChh
Q 013681 218 LGFSTLKLNVGRN------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (438)
Q Consensus 218 ~Gf~~iKlKvG~d------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~ 290 (438)
+||+.||+|+|.+ ++.|++++++||+ .++++.|++|+|++|++++|++++++|+++++ .|||||+++++++
T Consensus 153 ~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~ 230 (357)
T cd03316 153 EGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLE 230 (357)
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHH
Confidence 9999999999974 6899999999999 57899999999999999999999999999987 5999999999999
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
.+++|++ ++++||++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+.
T Consensus 231 ~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~~ 305 (357)
T cd03316 231 GLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIGL 305 (357)
T ss_pred HHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999998 9999999999999999999999866 9999
Q ss_pred HHHHHHHhhcCCcceeecCCCc-ccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 370 GFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
++++|+++++++..+.|++.+. ....+++..++.++||++.+|++||||++
T Consensus 306 aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 306 AASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 9999999999998888877653 33445566778899999999999999986
No 12
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=9.1e-62 Score=490.33 Aligned_cols=330 Identities=17% Similarity=0.269 Sum_probs=282.0
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~ 145 (438)
+|++|+++.+ + ++.++|+|+|++|++||||+.+.. +.+. ....++.+.|.|.|+++.+++
T Consensus 1 ~I~~i~~~~~--~--------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~--~~~~~~~l~p~l~G~d~~~~~ 60 (352)
T cd03325 1 KITKIETFVV--P--------------PRWLFVKIETDEGVVGWGEPTVEG--KART--VEAAVQELEDYLIGKDPMNIE 60 (352)
T ss_pred CeEEEEEEEE--C--------------CCEEEEEEEECCCCEEEeccccCC--cchH--HHHHHHHHHHHhCCCCHHHHH
Confidence 5788888654 1 246899999999999999997521 1121 222345689999999999999
Q ss_pred HHHHHHHHH--CCCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCc
Q 013681 146 FALDEIARI--LPGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (438)
Q Consensus 146 ~~~~~l~~~--~~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (438)
.+|+.|... ..++ ..+++++||||||||++||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 140 (352)
T cd03325 61 HHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFT 140 (352)
T ss_pred HHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 999999653 2222 24578999999999999999999999999996 7899999988778999998899999999999
Q ss_pred EEEEecCC---------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 222 TLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 222 ~iKlKvG~---------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+||+|+|. ++++|+++|+++|+ .+|+++||||||++|++++|++++++|+++++ .|||||++++|+++
T Consensus 141 ~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~ 218 (352)
T cd03325 141 AVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRL--LFIEEPVLPENVEA 218 (352)
T ss_pred EEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCC--cEEECCCCccCHHH
Confidence 99999984 46889999999999 57999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (438)
|++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+++
T Consensus 219 ~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~~ 293 (352)
T cd03325 219 LAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIALA 293 (352)
T ss_pred HHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHHH
Confidence 999986 68999999999999999999999999999999999997 99999999999999999999996 8999999
Q ss_pred HHHHHHhhcCCcceee--cCCCccccc----CCCC-CceeeeCcEEecCCCCCccceeC
Q 013681 371 FALHLAAGLGCIKYVN--LNTPFLLSE----DPFV-GGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 371 a~~hla~al~~~~~~e--~~~pl~~~~----~~~~-~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+++|+++++++..+.+ ++.+....+ +.+. .++.++||++.+|++||||+++|
T Consensus 294 a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 294 ASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999998865543 222222111 1233 56788999999999999999987
No 13
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=2.1e-61 Score=489.10 Aligned_cols=336 Identities=14% Similarity=0.163 Sum_probs=286.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~~~ 144 (438)
||++|+.+.. . |. ++.++|+|+|++|++||||+.+.. +. ......++ .+.|.|.|+++.++
T Consensus 1 kI~~ie~~~~-~----~~---------~~~vlV~v~td~G~~G~GE~~~~~--~~--~~~~~~i~~~l~p~l~G~d~~~~ 62 (361)
T cd03322 1 KITAIEVIVT-C----PG---------RNFVTLKITTDQGVTGLGDATLNG--RE--LAVKAYLREHLKPLLIGRDANRI 62 (361)
T ss_pred CeEEEEEEEE-C----CC---------CCEEEEEEEeCCCCeEEEecccCC--CH--HHHHHHHHHHHHHHcCCCChhHH
Confidence 6889998543 2 21 246899999999999999986321 11 12222343 48899999999999
Q ss_pred HHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 145 NFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 145 ~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+|+.|+... . +....++++|||+||||++||..|+|||+||||. ++++|+|.+.+..+++++.+++++++++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~Gf 142 (361)
T cd03322 63 EDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGY 142 (361)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 99999997631 2 2223468999999999999999999999999996 789999977666678889899999999999
Q ss_pred cEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 221 ~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
+.||+|+ +++|+++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 143 ~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~-- 211 (361)
T cd03322 143 RAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRL--FWMEDPTPAENQEAFRLIRQ-- 211 (361)
T ss_pred CeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCC--CEEECCCCcccHHHHHHHHh--
Confidence 9999998 889999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~ 377 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+|++++++|+++
T Consensus 212 --~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa 289 (361)
T cd03322 212 --HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDL 289 (361)
T ss_pred --cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHh
Confidence 68999999999999999999999999999999999998 999999999999999999999887 69999999999999
Q ss_pred hcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 378 al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
++++..+.++........+++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 290 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~~~~~~ 344 (361)
T cd03322 290 WVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAAKFPYV 344 (361)
T ss_pred hcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHhhCCCC
Confidence 9888665564321112234566678889999999999999999999999999653
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.9e-60 Score=477.42 Aligned_cols=309 Identities=17% Similarity=0.261 Sum_probs=266.3
Q ss_pred EEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--C--CChhhHHHHHHHH
Q 013681 95 NVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--P--GSEFASVRAGVEM 169 (438)
Q Consensus 95 ~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~~--~--g~~~~sa~~aie~ 169 (438)
.++|||+|++|++||||+.+. .. ....+ +.+.|.|+|+++.+++.+|+.|++.. . +....++++||||
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~----~~---~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~ 83 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG----PV---ACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDL 83 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc----hH---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHH
Confidence 589999999999999998531 11 11223 45899999999999999999997642 1 1223468999999
Q ss_pred HHHHHHHHHCCCCHHHHhCCC-CCceeeeeee-CCCCHHHHHHHHHHHhhcCCcEEEEecCC-------CchHHHHHHHH
Q 013681 170 ALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQA 240 (438)
Q Consensus 170 AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-------d~~~di~~l~a 240 (438)
||||++||..|+|||+||||. ++++|+|++. ...+++++.+++++++++||++||+|+|. ++++|++++++
T Consensus 84 AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~a 163 (341)
T cd03327 84 ALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRA 163 (341)
T ss_pred HHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999996 7899999874 35688999999999999999999999973 35889999999
Q ss_pred HHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 241 IHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 241 iR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..++
T Consensus 164 vr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 164 IREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGF 237 (341)
T ss_pred HHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCHHHHHHHHh----cCCCCeEeccCccCHHHH
Confidence 999 57999999999999999999999999999997 49999999999999999986 789999999999999999
Q ss_pred HHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC--Ccc----
Q 013681 320 QKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PFL---- 392 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~--pl~---- 392 (438)
+++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++++|..+.|+.. +..
T Consensus 238 ~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~ 311 (341)
T cd03327 238 KRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------QIYNYHFIMSEPNSPFAEYLPNSPDEVGNP 311 (341)
T ss_pred HHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------HHHHHHHHHhCcCceeEEecccccccccch
Confidence 99999999999999999997 99999999999999999999972 458899999999977776532 111
Q ss_pred cccCCCCCceeeeCcEEecCCCCCccceeC
Q 013681 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 393 ~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+..+++.+++.++||++.+|++||||+++|
T Consensus 312 ~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 312 LFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred hHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 113455566778999999999999999987
No 15
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.5e-60 Score=483.19 Aligned_cols=343 Identities=18% Similarity=0.241 Sum_probs=277.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCe--eEeeeeEEEEEEEEcC-CcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~--~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~ 141 (438)
+||++++++.+++|+++|+..+.. .....+.++|+|+||+ |++||||+..... +.+. ....++.++|.|+|+++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~--~~~~~~~lap~liG~d~ 77 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI--VCAAIEALAHLVVGRDL 77 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH--HHHHHHHHHHHhCCCCH
Confidence 589999999999999999865433 3344578999999999 9999999864311 1111 11223568999999999
Q ss_pred CCHHHHHHHHHHHCC--------C---ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-C------------------
Q 013681 142 TTLNFALDEIARILP--------G---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-S------------------ 191 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~--------g---~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~------------------ 191 (438)
.+++.+++.+.+.+. + .....+++||||||||++||.+|+|||+||||. +
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~~ 157 (415)
T cd03324 78 ESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTP 157 (415)
T ss_pred HHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccCH
Confidence 988554444433221 1 122468999999999999999999999999993 2
Q ss_pred -----------------------Cceeeeeee-C--CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-h
Q 013681 192 -----------------------NSLSTAITI-P--AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-V 244 (438)
Q Consensus 192 -----------------------~~ip~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~ 244 (438)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.++++|+++++++|+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~v 237 (415)
T cd03324 158 EEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVI 237 (415)
T ss_pred HHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 578888642 2 247888999999999999999999999989999999999999 5
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc---CCeEEEcCCCCCHHHHHH
Q 013681 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVADESCRSLNDVQK 321 (438)
Q Consensus 245 ~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~---~iPIa~dEsl~~~~d~~~ 321 (438)
||++.|+||+|++|++++|++++++|+++++ .|||||++++|+++|++|++ ++ ++||++||++.+..++++
T Consensus 238 G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~~ 311 (415)
T cd03324 238 GPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFKQ 311 (415)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHHH
Confidence 8999999999999999999999999999997 49999999999999999986 45 699999999999999999
Q ss_pred HHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC-----c---ceeecCCCcc
Q 013681 322 VMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC-----I---KYVNLNTPFL 392 (438)
Q Consensus 322 ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~-----~---~~~e~~~pl~ 392 (438)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+ +++++++++|.++.+.. . .+.|+.. +
T Consensus 312 ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 386 (415)
T cd03324 312 LLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGRVIEYVD--H 386 (415)
T ss_pred HHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccchhhhHH--H
Confidence 999999999999999998 9999999999999999999996 67777777654432111 0 1122211 1
Q ss_pred cccCCCCCceeeeCcEEecCCCCCccceeC
Q 013681 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 393 ~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+ .+.+.+++.++||++.+|++||||+++.
T Consensus 387 ~-~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 387 L-HEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred H-HhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 1 2344567889999999999999999974
No 16
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=1.4e-59 Score=484.30 Aligned_cols=350 Identities=15% Similarity=0.227 Sum_probs=287.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCee-EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
..|+++++.++... ..|+....|. -+..+.++|+|+|++|++||||+.+ .+... ..++.++|.|+|+++.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~--~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR--ATLEDARPLVVGKPLGE 75 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH--HHHHHHHHHhcCCCHHH
Confidence 35666666555221 2233333222 2378899999999999999999853 11111 22356899999999999
Q ss_pred HHHHHHHHHHHCC-------CCh------hhHHHHHHHHHHHHHHHHHCCCCHHHHhC-CC-CCceeeeeee---C----
Q 013681 144 LNFALDEIARILP-------GSE------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITI---P---- 201 (438)
Q Consensus 144 ~~~~~~~l~~~~~-------g~~------~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i---~---- 201 (438)
++.+|+.|.+... +.. ..++++||||||||++||..|+|||+||| |. ++++|+|.+. +
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999976431 111 35689999999999999999999999999 64 7899987541 1
Q ss_pred ----------------------CCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCC
Q 013681 202 ----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 202 ----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~ 257 (438)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|+.++++.|+||||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1368888888888776 599999999996 5789999999999977999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
|++++|++++++|+++ + .|||||++++| +++|++|++ ++++||++||++.++.+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 7 49999999998 899999986 69999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccc--cCCCCCceeeeCcEEec
Q 013681 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~--~~~~~~~~~~~~G~~~~ 411 (438)
|+...|++++++++++|+++|+++++|+..+++|+.+|++|+++++++.. .+++.++... ++++.+++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99765799999999999999999999998889999999999999887632 3444443322 34555678889999999
Q ss_pred CCCCCccceeChhhhhhcc
Q 013681 412 TNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 412 p~~pGlGv~ld~~~l~~~~ 430 (438)
|++||||+++|++++++|.
T Consensus 388 p~~PGLGve~d~~~l~~~~ 406 (441)
T TIGR03247 388 PDKPGLGVEIDMDAVDAAH 406 (441)
T ss_pred CCCCCCCceeCHHHHHHHH
Confidence 9999999999999999995
No 17
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=9.4e-60 Score=479.32 Aligned_cols=356 Identities=24% Similarity=0.360 Sum_probs=303.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|+|.+|+.+.+.+|+..|+.++.++.+.+..++|+++|++|++|||||.+...... ...... ..+.+.+.|.++.++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~~~--~~~~~~l~g~d~~~i 77 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEAEA--VLLAPLLIGRDPFDI 77 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhhhH--HHHHHHhcCCCHHHH
Confidence 56788899999999999999999888999999999999999999999998532111 111111 157889999999999
Q ss_pred HHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCC-CCHHHH-HHHHHHHhhc
Q 013681 145 NFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA-VSPAEA-SELASKYCKL 218 (438)
Q Consensus 145 ~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~-~~~~~~-~~~~~~~~~~ 218 (438)
+.+|+.++... .++...++++|||+||||++||..|+|||+||||. ++++++|.+... .+++++ .+.++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~ 157 (372)
T COG4948 78 ERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVEL 157 (372)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 99999998753 13334679999999999999999999999999998 578999888765 344444 5666666669
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||+.+|+|+|. +.+.|+++++++|++ +++++|++|||++||+++|++++++|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~ 235 (372)
T COG4948 158 GFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRELR 235 (372)
T ss_pred CCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHHH
Confidence 99999999997 567999999999996 5699999999999999999999999999996 6999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++++|++|+
T Consensus 236 ~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~hl 309 (372)
T COG4948 236 A----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALHL 309 (372)
T ss_pred h----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHHH
Confidence 6 56799999999999999999999999999999999998 9999999999997777776665 599999999999
Q ss_pred HhhcCCcceeecCCCcccccC-----CCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 376 AAGLGCIKYVNLNTPFLLSED-----PFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 376 a~al~~~~~~e~~~pl~~~~~-----~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++.++ +.+++.|..+..+ ++.++...+||++.+|++||||+++|++.+++|.+..
T Consensus 310 a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~~~~~~~~ 370 (372)
T COG4948 310 AAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDALAKYRVRY 370 (372)
T ss_pred hhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHHHhccccc
Confidence 998744 4466666554333 4666677899999999999999999999999998754
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=2e-58 Score=460.85 Aligned_cols=316 Identities=20% Similarity=0.292 Sum_probs=274.8
Q ss_pred EEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHH-HHHHHH-HhhHhcCCCCCCHHHHH
Q 013681 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQSPPTTLNFAL 148 (438)
Q Consensus 73 ~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-i~~~l~g~~~~~~~~~~ 148 (438)
+.+++|+++||.++.+++++++.++|+|+|++|++||||+.+. |.++++.... ...+++ +.|.+.| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 3578999999999999999999999999999999999999864 5555543332 333444 5789999 999999999
Q ss_pred HHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC
Q 013681 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (438)
Q Consensus 149 ~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG 228 (438)
+.+.+ ..++ +++++||||||||++||..|+|+|+|||+.++++|+|.+++..+++++.+++++++++||++||+|+|
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 98865 3333 56899999999999999999999999999889999999988889999999999999999999999997
Q ss_pred CCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 229 RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 229 ~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
. +.|+++++++|+.+|+++|++|||++|++++| +++++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67899999999987999999999999999986 67899999987 59999999999999999986 6899999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~ 387 (438)
+||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++..++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765433344
Q ss_pred C-CCcccccCCCCCc
Q 013681 388 N-TPFLLSEDPFVGG 401 (438)
Q Consensus 388 ~-~pl~~~~~~~~~~ 401 (438)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 2234445554443
No 19
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=4.2e-57 Score=450.82 Aligned_cols=316 Identities=24% Similarity=0.341 Sum_probs=273.0
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc-CCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~-g~~~~~~~~~ 147 (438)
+++++++++|++.||.++.++.+.++.++|+|+ ++|.+||||++|.+.++.........+..++|.|. +. +.+.
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~- 77 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGL---TREA- 77 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCC---CHHH-
Confidence 789999999999999999999999999999998 58999999999987765322223344556788886 32 1222
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
+...+ + .+++++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++||+|
T Consensus 78 ---~~~~~-~--~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 78 ---LQKLL-P--AGAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred ---HHhhc-c--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 21112 2 2578999999999999999999999999996 678999999988899999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 227 vG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+|. +.|+++++++|+..+++.||+|||++|++++|++++++|+++++ .|||||++++|+++++++ ++++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999977899999999999999999999999999987 599999999998887765 35899
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.++.+++++. +++|++|+|++++| ++++++++++|+++|+++|+|+|+||+++.++++|+ +++..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999998884 68999999999998 999999999999999999999999999999999999 3566778
Q ss_pred ecCCCcccccCCCCCceeeeCcEEec
Q 013681 386 NLNTPFLLSEDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 386 e~~~pl~~~~~~~~~~~~~~~G~~~~ 411 (438)
|+++++++.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9999988888874 568889998753
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=9.2e-57 Score=447.87 Aligned_cols=311 Identities=35% Similarity=0.563 Sum_probs=278.7
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchH-HHHHHHHHHHhhHhcCCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-TKALVKVREACQFLRQSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~-~~~~~~~~~i~~~l~g~~~~~~~~~ 147 (438)
+++++.+++|+++|+.++.++...++.++|||+|+ |++|||||.+.++++++. ......++.++|.|.|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 36789999999999999999999999999999999 999999999887655532 22333455679999999999 9999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh-CCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF-GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll-gg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
|+.|.....+ .+++++|||+||||++||..|+|+|+|| |+.++++|+|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999875543 3568999999999999999999999995 455789999988888899999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 227 vG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+|.+.+.|+++++++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999953399999999999999999999999999987 59999999999999999986 68999
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++|++|++++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 4455
Q ss_pred ecCCCc
Q 013681 386 NLNTPF 391 (438)
Q Consensus 386 e~~~pl 391 (438)
|+++++
T Consensus 309 ~~~~~~ 314 (316)
T cd03319 309 DLDGPL 314 (316)
T ss_pred eccCcc
Confidence 655543
No 21
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=1.2e-56 Score=456.95 Aligned_cols=317 Identities=15% Similarity=0.217 Sum_probs=260.4
Q ss_pred EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHHHHHHC--CC--ChhhHHHH
Q 013681 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL--PG--SEFASVRA 165 (438)
Q Consensus 90 ~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~sa~~ 165 (438)
.+.++.++|||+|++|++||||+.+. +. ......+.+.|.|+|+++.+++.+|+.|++.. .+ ....++++
T Consensus 53 ~~~~~~vlVrI~td~G~~G~Ge~~~~-----~~-~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~s 126 (394)
T PRK15440 53 INVLGTLVVEVEAENGQVGFAVSTAG-----EM-GAFIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTIS 126 (394)
T ss_pred eeccceEEEEEEECCCCEEEEeCCCc-----HH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHH
Confidence 35678899999999999999996431 11 11122245889999999999999999997642 22 22346899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC--C-----CchHHHHH
Q 013681 166 GVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG--R-----NITADFDV 237 (438)
Q Consensus 166 aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG--~-----d~~~di~~ 237 (438)
|||+|||||+||.+|+|||+||||. ++++|+|.+.. .++ + ..++||+++|+|+| + ++++|+++
T Consensus 127 aIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~-~------a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~ 197 (394)
T PRK15440 127 CVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD-L------AKEMGFIGGKMPLHHGPADGDAGLRKNAAM 197 (394)
T ss_pred HHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH-H------HHhCCCCEEEEcCCcCcccchHHHHHHHHH
Confidence 9999999999999999999999996 78999987532 222 1 13689999999994 2 35889999
Q ss_pred HHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 238 LQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 238 l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
|+++|+ +|+++.|+||||++|++++|++++++|+++++ .|||||++++|+++|++|++.. .+++||+.||++.++
T Consensus 198 v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l--~wiEEPl~~~d~~~~~~L~~~~--~~~i~ia~gE~~~~~ 273 (394)
T PRK15440 198 VADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGL--KWIEECLPPDDYWGYRELKRNA--PAGMMVTSGEHEATL 273 (394)
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--cceeCCCCcccHHHHHHHHHhC--CCCCceecCCCccCH
Confidence 999999 68999999999999999999999999999997 4999999999999999998621 245899999999999
Q ss_pred HHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC--CCc--
Q 013681 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPF-- 391 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~--~pl-- 391 (438)
.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++++|..++|+. .|.
T Consensus 274 ~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~ 347 (394)
T PRK15440 274 QGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDAD 347 (394)
T ss_pred HHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcccc
Confidence 99999999999999999999997 99999999999999999999962 35788999999998887752 111
Q ss_pred ---ccccCCCCCceeeeCcEEecC--CCCCccceeChhhhhhccc
Q 013681 392 ---LLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 392 ---~~~~~~~~~~~~~~~G~~~~p--~~pGlGv~ld~~~l~~~~~ 431 (438)
....+.+...+.++||++.+| ++||||+++|++++..+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~~~~p~ 392 (394)
T PRK15440 348 TVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRPY 392 (394)
T ss_pred ccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHHhhCCC
Confidence 111111222356789999999 9999999999999966554
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=1.6e-54 Score=421.50 Aligned_cols=256 Identities=31% Similarity=0.499 Sum_probs=243.5
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~ 149 (438)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 46789999999999999999999999999999999999999984
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC
Q 013681 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (438)
Q Consensus 150 ~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~ 229 (438)
++|||+||||++||..|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+|+|.
T Consensus 45 --------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~ 110 (265)
T cd03315 45 --------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR 110 (265)
T ss_pred --------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 679999999999999999999999998889999999888889999999999999999999999998
Q ss_pred CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 230 NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 230 d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
+.++|++++++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ ++++||+
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia 184 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPIM 184 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCEE
Confidence 889999999999995 6799999999999999999999999999987 59999999999999999986 6899999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|++++++.
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999998763
No 23
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=9.1e-52 Score=409.57 Aligned_cols=287 Identities=22% Similarity=0.290 Sum_probs=245.4
Q ss_pred EEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH-HHHHHHHhhHhcCCCCCCHHHHHHHH
Q 013681 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVREACQFLRQSPPTTLNFALDEI 151 (438)
Q Consensus 73 ~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~i~~~l~g~~~~~~~~~~~~l 151 (438)
+.+++|++.||.++.++.+.++.++|+|++ +|++|||||.|.|.|++++.+. ...++.+.+.+.|.++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~~-~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLTD-EGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEEE-CCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 357899999999999999999999999994 6999999999999888865443 335566888888776543321
Q ss_pred HHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-C
Q 013681 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-N 230 (438)
Q Consensus 152 ~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d 230 (438)
..+++++|||+||||+.||. +.| ....+...++++++++++.+++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~--------~~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELP--------PASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCC--------cccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12578999999999999987 111 122233456677889988776665 7999999999996 7
Q ss_pred chHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 231 ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 231 ~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+++|+++|++||+. ++++.||+|||++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 89999999999994 6789999999999999999999999997 776 5999999865 88999976 68999
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++++.....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877666
Q ss_pred ecCCCc
Q 013681 386 NLNTPF 391 (438)
Q Consensus 386 e~~~pl 391 (438)
.++++.
T Consensus 289 ~~~~~~ 294 (307)
T TIGR01927 289 VGFTTA 294 (307)
T ss_pred CCccHH
Confidence 666653
No 24
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.5e-52 Score=403.15 Aligned_cols=250 Identities=28% Similarity=0.398 Sum_probs=231.0
Q ss_pred EEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 013681 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (438)
Q Consensus 71 ~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~ 150 (438)
+++.+++|+++||.++.++++.++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 4678899999999999999999999999999999999999998642
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC
Q 013681 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (438)
Q Consensus 151 l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~ 229 (438)
+++||||||||+.||..| ||. ++++|+|.+++..++ ++.+.+++++++||++||+|+|.
T Consensus 48 ------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~ 107 (263)
T cd03320 48 ------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA 107 (263)
T ss_pred ------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC
Confidence 589999999999999998 665 789999999988877 55566788889999999999996
Q ss_pred -CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 230 -NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 230 -d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
++++|+++++++|+. ++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|+ +++||
T Consensus 108 ~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~PI 179 (263)
T cd03320 108 TSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVPI 179 (263)
T ss_pred CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCCe
Confidence 678999999999995 6799999999999999999999999999987 4999999999999998874 68999
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCc
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~ 382 (438)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+++++++.
T Consensus 180 a~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 180 ALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999998863
No 25
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=7.3e-50 Score=398.45 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=247.5
Q ss_pred EEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHHHhhHhcCCCCCCHHH
Q 013681 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNF 146 (438)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~i~~~l~g~~~~~~~~ 146 (438)
++++++.+++|++.||.++.++.+.++.++|+|+ ++|++|||||.|.|.|++++.... ..+.+..+.+.+.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 3789999999999999999999999999999997 789999999999999888654433 345553333433333221
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
...++++++++++|+||+.||..+.|++.. .+++.++++++.++++++ +||++||+|
T Consensus 79 ----------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 79 ----------LSQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred ----------cccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 123468899999999999999999888621 234457889998888886 899999999
Q ss_pred cCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 227 vG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
+|. ++++|++++++||+..+++.||+|||++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 995 7899999999999966899999999999999999999999998 876 599999964 567888875 6
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+++||++||++.+.. ....+ .+++|++|+|++++| ++++++++++|+++|+++++||++||+||.+|++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 568999999999998 999999999999999999999999999999999999999966
Q ss_pred cceeecCCCcccccCCC
Q 013681 382 IKYVNLNTPFLLSEDPF 398 (438)
Q Consensus 382 ~~~~e~~~pl~~~~~~~ 398 (438)
..+.+++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777888877776643
No 26
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=4.2e-49 Score=392.82 Aligned_cols=282 Identities=21% Similarity=0.292 Sum_probs=233.9
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHHHhhHhcCCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~i~~~l~g~~~~~~~~~ 147 (438)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||+.|.|.|++++.+.. ..++.+.+.+.+. .
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~- 76 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------Q- 76 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------H-
Confidence 5779999999999999999999999999999999999999999999998887654433 2233334443221 1
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEec
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKv 227 (438)
...+. ..++++++|+|+|+.|+.++..+. ....+|++..+ .+++++.+++++++++||++||+|+
T Consensus 77 ~~~~~-----~~~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 77 IFSIP-----DALPACQFGFESALENESGSRSNV--------TLNPLSYSALL--PAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred HHhhh-----hcCCHHHHHHHHHHHHHhcccccC--------CcCCCceeeec--CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 11111 113578999999944455554221 12345554444 5668888899999999999999999
Q ss_pred CC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 228 GR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 228 G~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|. ++++|+++|++||+ .++++.|++|||++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 97 58899999999999 47899999999999999999999999998 676 59999999999999999986 6
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+++||++||++.+..+++++++.+++|++|+|++++| ++++ .++|+++|+++++||++||+||++|++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999997 9854 57899999999999999999999999999999875
No 27
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=1.4e-48 Score=396.57 Aligned_cols=286 Identities=17% Similarity=0.220 Sum_probs=243.1
Q ss_pred eeeEEEEEEEEcCCcEEEEEEecCCCCCchH-------HHH-HHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCChhh
Q 013681 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-------TKA-LVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSEFA 161 (438)
Q Consensus 92 ~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~-------~~~-~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 161 (438)
..+.++|+|+|++|.+|||||.+. .|+++. .+. ...++ .+.|.|+|+++.+++.+++.|.... .+....
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 468899999999999999999984 556532 232 23344 4899999999999999999998763 121235
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHhC------CCCCceeeeeeeCC---CCHHHHHHHHHHHhhcC-CcEEEEecCCCc
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLFG------GASNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKLNVGRNI 231 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Llg------g~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKlKvG~d~ 231 (438)
++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .++++|...+++++++| |+.+| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 678999999999999999999999998 55689999999774 57899999999999998 99999 899865
Q ss_pred hHH-------HHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHhhh----CCCCCceEecCCCCCC----hh
Q 013681 232 TAD-------FDVLQAIHAVHPHCSFILDANE------GYTSEEAVEVLGKLND----MGVIPVLFEQPVHRDD----WS 290 (438)
Q Consensus 232 ~~d-------i~~l~aiR~~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~----~~l~~~~iEqPl~~~d----~~ 290 (438)
.+| .++++++|+.+++..|++|+|+ +|++++|++++++|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 444 4566666644668899999998 9999999999999985 663 9999998865 99
Q ss_pred hHHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhH
Q 013681 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRL 367 (438)
Q Consensus 291 ~~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~i 367 (438)
++++|++.++ +.+++||++||++.+++|++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 9999986321 136999999999999999999999999999999999998 999999999999999999999986 9999
Q ss_pred HHHHHHHHHhhcCCc
Q 013681 368 ATGFALHLAAGLGCI 382 (438)
Q Consensus 368 g~~a~~hla~al~~~ 382 (438)
+.+|++|++++++..
T Consensus 363 ~~aa~~Hlaaa~~~~ 377 (408)
T TIGR01502 363 SAEVTTHVGMATGAR 377 (408)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987753
No 28
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.7e-48 Score=392.04 Aligned_cols=288 Identities=18% Similarity=0.234 Sum_probs=233.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCC---Cch-H----HHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCCh-hh
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLV---TGD-Q----TKALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSE-FA 161 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~---s~~-~----~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~ 161 (438)
.+.++|||+|++|++||||+.+. .+ +++ . ......++ .+.|.|+|+++.+++.+|+.|++.. .++. ..
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~-~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~ 90 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAV-QYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHT 90 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccc-cccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchh
Confidence 46899999999999999999753 22 122 1 11222333 4789999999999999999997753 2332 24
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHhC-----CC-CCceeeeeeeCCC---CHHHHHHHHHHHhhc---------CCcEE
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLFG-----GA-SNSLSTAITIPAV---SPAEASELASKYCKL---------GFSTL 223 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Llg-----g~-~~~ip~~~~i~~~---~~~~~~~~~~~~~~~---------Gf~~i 223 (438)
++++|||+||||++||.+|+|||+||| |. ++++|+|.+++.. ..+++.+++++++++ ||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 578999999999999999999999999 43 6899999876542 356666666555533 55555
Q ss_pred EEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCC----C--CHHHHHHHHHHhhhC-C-CCCceEecCCCCCC----hhh
Q 013681 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEG----Y--TSEEAVEVLGKLNDM-G-VIPVLFEQPVHRDD----WSG 291 (438)
Q Consensus 224 KlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~----~--s~~~A~~~l~~L~~~-~-l~~~~iEqPl~~~d----~~~ 291 (438)
|+|+ +.++|.++++++|+.++++.|+||+|++ | ++++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 5554 3567889999999668999999999987 6 999999999999976 2 2 359999999855 899
Q ss_pred HHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHH
Q 013681 292 LHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLA 368 (438)
Q Consensus 292 ~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig 368 (438)
|++|++..+ +.+++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +||+|+
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999986210 125899999999999999999999999999999999998 99999999999999999999987 499999
Q ss_pred HHHHHHHHhhcCCcce
Q 013681 369 TGFALHLAAGLGCIKY 384 (438)
Q Consensus 369 ~~a~~hla~al~~~~~ 384 (438)
.+|++|+++++++...
T Consensus 328 ~aa~lHlaaa~~~~~~ 343 (369)
T cd03314 328 ARVTVHVALATRADQM 343 (369)
T ss_pred HHHHHHHHHhcCCcce
Confidence 9999999999887643
No 29
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=3.6e-48 Score=452.93 Aligned_cols=316 Identities=25% Similarity=0.311 Sum_probs=259.5
Q ss_pred ecccccccccccccCCcceeeEEEEEEEEEEeeccCCcccCCee--EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH
Q 013681 46 VRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT 123 (438)
Q Consensus 46 ~~~~~~ts~~~~~~~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~ 123 (438)
+..+..-+.|++. |||++++++++++|++.||.++.++ ...++.++|+|++++|.+|||||+|++.++.+..
T Consensus 918 ~~~~~~~~~~~~~------~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~ 991 (1655)
T PLN02980 918 SSCLHSIIDGVFL------CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLL 991 (1655)
T ss_pred CCccccccccccc------ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCccccc
Confidence 3445555666555 9999999999999999999999875 3468999999999999999999999865432211
Q ss_pred HHHHHH------------HHHhhHhcCCCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC
Q 013681 124 KALVKV------------REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191 (438)
Q Consensus 124 ~~~~~~------------~~i~~~l~g~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~ 191 (438)
+....+ ..+.|.|.|.++ +.+|+.+.. ..+..++++++||||||||++||..|+|+|+||||.+
T Consensus 992 ~~~~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~ 1067 (1655)
T PLN02980 992 DVEEQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQ 1067 (1655)
T ss_pred cHHHHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC
Confidence 111111 123567777743 333444421 1122468999999999999999999999999998742
Q ss_pred ---------Cceeeeeee-CCCCHHHHHHHHHHHhhcCCcEEEEecCC--CchHHHHHHHHHHh-hCCCcEEEEeCCCCC
Q 013681 192 ---------NSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHA-VHPHCSFILDANEGY 258 (438)
Q Consensus 192 ---------~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~~~di~~l~aiR~-~~~~~~L~vDAN~~~ 258 (438)
.++|+|..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+ .+++++||+|||++|
T Consensus 1068 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~w 1147 (1655)
T PLN02980 1068 KDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNW 1147 (1655)
T ss_pred CCcceeccccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCC
Confidence 346666665 45689999999999999999999999995 68999999999999 578999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHH-----HHHHHHcCCccEEEe
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND-----VQKVMQENLASVVNI 333 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d-----~~~ll~~~a~d~i~l 333 (438)
++++|++++++|+++++ .|||||++ +++++++|++ ++++|||+||++.+..+ ++++++.+ ++++++
T Consensus 1148 s~~~A~~~~~~L~~~~i--~~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~i 1218 (1655)
T PLN02980 1148 TYEEAIEFGSLVKSCNL--KYIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVI 1218 (1655)
T ss_pred CHHHHHHHHHHHhhcCC--CEEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEe
Confidence 99999999999999987 49999997 4788999886 68999999999998754 56777665 558899
Q ss_pred cCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcC
Q 013681 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (438)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~ 380 (438)
|++++| ++++++++++|+++|+++++||++||+||++|++|+++.++
T Consensus 1219 K~~~~GGit~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1219 KPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred ChhhhCCHHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 999998 99999999999999999999999999999999999998873
No 30
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=1.2e-47 Score=365.49 Aligned_cols=225 Identities=27% Similarity=0.504 Sum_probs=211.3
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~ 149 (438)
++++.+++|++.||.++.++.+.++.++|+|+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678899999999999999999999999999999999999998
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC
Q 013681 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (438)
Q Consensus 150 ~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG 228 (438)
++||||||||+.||..|+|||+||||. ++++|+|.+
T Consensus 44 --------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~----------------------------- 80 (229)
T cd00308 44 --------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS----------------------------- 80 (229)
T ss_pred --------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-----------------------------
Confidence 689999999999999999999999996 788998865
Q ss_pred CCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 229 RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 229 ~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
+++++++|+. ++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||
T Consensus 81 ------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pI 148 (229)
T cd00308 81 ------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIPI 148 (229)
T ss_pred ------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCCE
Confidence 7889999994 6899999999999999999999999999987 59999999999999999986 689999
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++++++|..+.|
T Consensus 149 a~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~e 228 (229)
T cd00308 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIE 228 (229)
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999866543
No 31
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=4.8e-43 Score=348.47 Aligned_cols=287 Identities=23% Similarity=0.318 Sum_probs=237.1
Q ss_pred EEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 013681 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (438)
Q Consensus 71 ~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~ 150 (438)
+.+.|++||+ .....++.|+.++++ |-.||||.+|++.|+.+. + ..++
T Consensus 13 ~~~~~~~p~~----~~~~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~--~---~~~~------------------ 60 (327)
T PRK02901 13 RAHVVALPMR----VRFRGITVREAVLIE-----GPAGWGEFSPFLEYDPAE--A---AAWL------------------ 60 (327)
T ss_pred cCeEEecccc----cccCCcceeEEEEEe-----cCCceEEecCCCCCCHHH--H---HHHH------------------
Confidence 3456778887 444567889999997 889999999998887631 1 1111
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-
Q 013681 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR- 229 (438)
Q Consensus 151 l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~- 229 (438)
.+++|.|-. +-| ...++++|+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 61 -------------~~~~~~~~~-------~~~-----~~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~~ 113 (327)
T PRK02901 61 -------------ASAIEAAYG-------GPP-----PPVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAEP 113 (327)
T ss_pred -------------HHHHHhhhc-------cCC-----cccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECCC
Confidence 223333210 001 1336789999998888888877666654 799999999974
Q ss_pred --CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCC
Q 013681 230 --NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 230 --d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
++++|++++++||+ .||++.|++|||++||+++|+++++.| +++++ .|||||++. +++|++|++ ++++
T Consensus 114 ~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~v 185 (327)
T PRK02901 114 GQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVGV 185 (327)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCCC
Confidence 68999999999999 579999999999999999999999999 77887 599999974 899999986 6899
Q ss_pred eEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcce
Q 013681 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY 384 (438)
Q Consensus 306 PIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~ 384 (438)
|||+||++.+..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||++||+||++|++|+++++++..+
T Consensus 186 PIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~~ 262 (327)
T PRK02901 186 PIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELDH 262 (327)
T ss_pred CEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999998 998877 679999999999999999999999999999998665
Q ss_pred -eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 385 -VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 385 -~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
.++++..++..|+ .+++.++||++.+|+ +++|++.+++|.++.
T Consensus 263 ~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l~~~~~~~ 306 (327)
T PRK02901 263 ACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARLAALAADP 306 (327)
T ss_pred ccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHHHhccCCH
Confidence 4666544455666 667889999999998 899999999998764
No 32
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=1.9e-37 Score=319.19 Aligned_cols=297 Identities=23% Similarity=0.292 Sum_probs=226.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC-----------CC-----CCc-hHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-----------PL-----VTG-DQTKALV 127 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~-----------~~-----~s~-~~~~~~~ 127 (438)
++|++|..+.+- .|. .++.|.|+|+|++|.+|+|++... +. |.+ ....++.
T Consensus 2 ~~I~~v~~r~i~--------dsr----g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR----GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 478888887642 222 267799999999999999997532 00 222 1123334
Q ss_pred HHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CC--ceeeeee
Q 013681 128 KVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SN--SLSTAIT 199 (438)
Q Consensus 128 ~~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~--~ip~~~~ 199 (438)
.++ .+.|.|+|+++.+++.+|+.|.+.- .+....++++|||+|+||+.||..|+|||+||||. ++ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 444 4899999999999999999997631 11122478999999999999999999999999995 33 4555443
Q ss_pred eCC----CC---HHH-H--------HHHHHHHhhcCCcEEEE---------ecC------CCchHHHHHHHHHHhh----
Q 013681 200 IPA----VS---PAE-A--------SELASKYCKLGFSTLKL---------NVG------RNITADFDVLQAIHAV---- 244 (438)
Q Consensus 200 i~~----~~---~~~-~--------~~~~~~~~~~Gf~~iKl---------KvG------~d~~~di~~l~aiR~~---- 244 (438)
++. .. ..+ | .+++.++..++|+.+|. ++| ++++.|.++|+.+|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 11 111 1 13344445667888886 356 3568899999999984
Q ss_pred ----CCCcEEEEeC-------CCC-------CCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhcccc--
Q 013681 245 ----HPHCSFILDA-------NEG-------YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-- 303 (438)
Q Consensus 245 ----~~~~~L~vDA-------N~~-------~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-- 303 (438)
|+++.|+||+ |+. |+++++++++.++ ++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 6899999999 343 5778888776665 56886 59999999999999999986 45
Q ss_pred CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE-ccCCchhHHHHHHHHHHhhc
Q 013681 304 GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 304 ~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hla~al 379 (438)
.+||++||. ..++.+++++++.+++|++++|++++| ++++++++++|+++|+.+++ |++.|++.+..|.+|++.+.
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~ 382 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNA 382 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCC
Confidence 699999997 467999999999999999999999998 99999999999999998776 88889999877777776554
No 33
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=7.9e-37 Score=313.14 Aligned_cols=281 Identities=25% Similarity=0.331 Sum_probs=219.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecC--C--------------CCCch-HHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVV--P--------------LVTGD-QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~--~--------------~~s~~-~~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
++.|.|+|+|++|.+|+|+++.. . .|+++ ....+..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 57799999999999999998652 1 13332 223444454 488999999999999999998753
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-Cceeeee--eeCC-----C--C-------H--HHHHHH
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAI--TIPA-----V--S-------P--AEASEL 211 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~~ip~~~--~i~~-----~--~-------~--~~~~~~ 211 (438)
. .+....++++|||||+||+.||..|+|||++|||.. .++|++. .++. + + | ..+.++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 1 122235789999999999999999999999999964 4555442 1211 0 1 1 222355
Q ss_pred HHHHhhcCCcEEE-----------EecC------CCchHHHHHHHHHHh-h-------CCCcEEEEeC------------
Q 013681 212 ASKYCKLGFSTLK-----------LNVG------RNITADFDVLQAIHA-V-------HPHCSFILDA------------ 254 (438)
Q Consensus 212 ~~~~~~~Gf~~iK-----------lKvG------~d~~~di~~l~aiR~-~-------~~~~~L~vDA------------ 254 (438)
+.++..+||+.+| +++| ++++.|.++|+.+|+ + |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6667788899988 3344 356889999988887 4 5689999999
Q ss_pred -----CCCCCHHHHHHHHHHhh-hCCCCCceEecCCCCCChhhHHHHHHhhcccc--CCeEEEcCC-CCCHHHHHHHHHc
Q 013681 255 -----NEGYTSEEAVEVLGKLN-DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQE 325 (438)
Q Consensus 255 -----N~~~s~~~A~~~l~~L~-~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~ 325 (438)
|+.|++++|+++++.|. +|++ .|||||++++|++++++|++ ++ ++||++||. +.++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 45588899999999874 6886 59999999999999999986 44 899999995 5789999999999
Q ss_pred CCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE-ccCCchhHHHHHHHHHHhhcCC
Q 013681 326 NLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 326 ~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hla~al~~ 381 (438)
+++|++++|++++| ++++++++++|+++|+++++ |++.|+..... +|++.+++.
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~--adlava~~~ 382 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFI--ADLAVALGA 382 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHH--HHHHHHhCc
Confidence 99999999999998 99999999999999999988 77778877644 466555544
No 34
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=4.6e-36 Score=308.99 Aligned_cols=283 Identities=23% Similarity=0.293 Sum_probs=215.5
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC----------------CCc-hHHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.++|.|+|+|++|.+|+++++.... |.+ ....++..++ .+.|.|+|+++.+++.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999864211 111 1123334454 478999999999999999999762
Q ss_pred --CCC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee--C--C--C---CHHHH---------HHH
Q 013681 155 --LPG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--P--A--V---SPAEA---------SEL 211 (438)
Q Consensus 155 --~~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--~--~--~---~~~~~---------~~~ 211 (438)
.++ ....++++|||||+||+.||..|+|||+||||. ++++|++... . . . +.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 111 122468999999999999999999999999996 5677776442 1 1 1 33432 122
Q ss_pred HHHHhhcCCcEEE--Ee-------cC------CCch---HHHHHH-HHHHh----hCCCcEEEEeCCC------------
Q 013681 212 ASKYCKLGFSTLK--LN-------VG------RNIT---ADFDVL-QAIHA----VHPHCSFILDANE------------ 256 (438)
Q Consensus 212 ~~~~~~~Gf~~iK--lK-------vG------~d~~---~di~~l-~aiR~----~~~~~~L~vDAN~------------ 256 (438)
+.++..+||+.+| +| +| ++++ +.++++ +++++ .|+++.|++|+|.
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333347899999 44 45 2332 334433 44444 3678999999973
Q ss_pred ------CCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhcccc--CCeEEEcCCCC-CHHHHHHHHHcC
Q 013681 257 ------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADESCR-SLNDVQKVMQEN 326 (438)
Q Consensus 257 ------~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~--~iPIa~dEsl~-~~~d~~~ll~~~ 326 (438)
.||.++|+++++. +++|++ .|||||++++|+++|++|++ ++ ++||++||+.. ++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 2467799999995 678886 59999999999999999986 56 79999999754 699999999999
Q ss_pred CccEEEecCCcch-HHHHHHHHHHHHHcCCeEE-EccCCchhHHHHHHHHHHhhcCC
Q 013681 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM-IDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 327 a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~-~~s~~es~ig~~a~~hla~al~~ 381 (438)
++|++++|++++| ++++++++++|+++|++++ .|++.|++++..|.+|++.+.+.
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ 385 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQ 385 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCc
Confidence 9999999999998 9999999999999999955 57778999999888888776543
No 35
>PLN00191 enolase
Probab=100.00 E-value=3.6e-30 Score=265.20 Aligned_cols=297 Identities=21% Similarity=0.265 Sum_probs=224.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCc----------EEEEEEecCCC----CCc-hHHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL----VTG-DQTKALVKV 129 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~----~s~-~~~~~~~~~ 129 (438)
++|++|..+.+- .|.| +++|.|+|+|++|. +|++|+..++. |.+ ....++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 579999887642 2222 67799999999997 78888865532 323 233445445
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh---CCC-CCceeeeee-
Q 013681 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA-SNSLSTAIT- 199 (438)
Q Consensus 130 ~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll---gg~-~~~ip~~~~- 199 (438)
++ +.|.|+|.++.+++.+++.|...- .+....++..|+++|+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 44 899999999999999988887532 12234678999999999999999999999999 664 456776541
Q ss_pred ---e----------------C--CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCchHHHHHHHHHHh
Q 013681 200 ---I----------------P--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITADFDVLQAIHA 243 (438)
Q Consensus 200 ---i----------------~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~~~di~~l~aiR~ 243 (438)
. | ..+..+..+. +.+.++. |... ..+| ++++.+.+.|+.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 1 1133332221 1222221 3321 1243 246666777766666
Q ss_pred ----hC--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHhhh-CCCCCceEecCCCCCChhhHH
Q 013681 244 ----VH--PHCSFILDANEG--------Y---------------TSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLH 293 (438)
Q Consensus 244 ----~~--~~~~L~vDAN~~--------~---------------s~~~A~~~l~~L~~-~~l~~~~iEqPl~~~d~~~~a 293 (438)
++ +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+||++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 23 479999998432 3 88999999999765 886 5999999999999999
Q ss_pred HHHHhhccccCCeEEEcCCC-CCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc-CCchhHHHH
Q 013681 294 DVSNFARDTYGISVVADESC-RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATG 370 (438)
Q Consensus 294 ~L~~~~r~~~~iPIa~dEsl-~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~ 370 (438)
+|++ ++.+||++||++ .++.+++++++.+++|++++|++++| ++++++++++|+++|+++|+++ +.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9986 588999999986 88999999999999999999999998 9999999999999999999965 899999999
Q ss_pred HHHHHHhhcCC
Q 013681 371 FALHLAAGLGC 381 (438)
Q Consensus 371 a~~hla~al~~ 381 (438)
|.+|++++.+.
T Consensus 406 Adlava~~~~~ 416 (457)
T PLN00191 406 ADLAVGLATGQ 416 (457)
T ss_pred HHHHHHhCCCc
Confidence 99999987754
No 36
>PTZ00081 enolase; Provisional
Probab=99.97 E-value=9.5e-28 Score=246.40 Aligned_cols=296 Identities=23% Similarity=0.294 Sum_probs=214.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCc----------EEEEEEecCCC-----CCc-hHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL-----VTG-DQTKALVK 128 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~-----~s~-~~~~~~~~ 128 (438)
|+|++|..+.+- .|.+ +++|.|+|+|++|. +|++|+..++. |.+ ....++..
T Consensus 2 ~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~ 69 (439)
T PTZ00081 2 STIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEN 69 (439)
T ss_pred cEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHH
Confidence 689999887642 2222 56799999999998 99999866543 222 23344444
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHCCC----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHh---CCC---C
Q 013681 129 VRE-ACQFLRQSPPTTLNFALDEIARILPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA---S 191 (438)
Q Consensus 129 ~~~-i~~~l~g~~~~~~~~~~~~l~~~~~g----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll---gg~---~ 191 (438)
+++ +.|.|+|.++.+++.+++.|.+.+.| ....++..|+++|+|++.|+..|+|||++| ||. .
T Consensus 70 v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~ 149 (439)
T PTZ00081 70 VNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDK 149 (439)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCC
Confidence 544 79999999999999999988773222 223678999999999999999999999999 553 1
Q ss_pred Cce--eeeeeeC--------------------CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCchHH
Q 013681 192 NSL--STAITIP--------------------AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITAD 234 (438)
Q Consensus 192 ~~i--p~~~~i~--------------------~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~~~d 234 (438)
..+ |.+..+. ..+..+..+. ..+.++. |... ..+| ++++.+
T Consensus 150 ~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~~ 227 (439)
T PTZ00081 150 FVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKDP 227 (439)
T ss_pred ccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCCH
Confidence 233 4433211 1133332221 1222221 4321 1233 244445
Q ss_pred HHHHHHHHh----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHhhhCCCCCceEecC
Q 013681 235 FDVLQAIHA----VH--PHCSFILDANE------------------------GYTSEEAVEVL-GKLNDMGVIPVLFEQP 283 (438)
Q Consensus 235 i~~l~aiR~----~~--~~~~L~vDAN~------------------------~~s~~~A~~~l-~~L~~~~l~~~~iEqP 283 (438)
.+.|+.+++ ++ +++.|.+|+.. .+|.+|.++++ +.+++|++ .|||||
T Consensus 228 eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IEDP 305 (439)
T PTZ00081 228 EEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIEDP 305 (439)
T ss_pred HHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEcC
Confidence 555555544 43 46888888732 36777878766 66789986 599999
Q ss_pred CCCCChhhHHHHHHhhcccc--CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE
Q 013681 284 VHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 284 l~~~d~~~~a~L~~~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (438)
++.+||+++++|++ ++ ++||++||. ..++.+++++++.++++++++|++++| ++++++++++|+++|+.+++
T Consensus 306 l~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 306 FDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 46 799999997 577999999999999999999999998 99999999999999999999
Q ss_pred ccCC-chhHHHHHHHHHHhhcCCc
Q 013681 360 DGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 360 ~s~~-es~ig~~a~~hla~al~~~ 382 (438)
++.. |+. ..+++|||.++++.
T Consensus 382 shrsgETe--d~~iadLAVa~~~~ 403 (439)
T PTZ00081 382 SHRSGETE--DTFIADLVVGLGTG 403 (439)
T ss_pred eCCCchhH--HHHHHHHHHHcCCC
Confidence 6654 554 57888999998765
No 37
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.96 E-value=7.1e-29 Score=225.95 Aligned_cols=275 Identities=20% Similarity=0.220 Sum_probs=216.6
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH--HHHHHHHhhHhcCCCCCCHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA--LVKVREACQFLRQSPPTTLNF 146 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~--~~~~~~i~~~l~g~~~~~~~~ 146 (438)
+..+|.+.+|+.......+..+..|++++|++.. ++..||||.+|+|++|.++.+. ...+.++-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~~-~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLRE-GEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEee-CCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 4578999999999988888899999999999985 6799999999999999865332 222344455555654432
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
..+||+.||+.+|+..+++-... .+....-| +..+||+++......+ .|-+.-|+|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~nY~~AP----LC~GDPDeL~~~L~~m--pGeKvAKvK 134 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AANYRVAP----LCTGDPDELYLKLADM--PGEKVAKVK 134 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcCccccc----CcCCCHHHHHHHHhcC--Ccceeeeee
Confidence 34689999999999999874421 12222222 3357999997666654 799999999
Q ss_pred cCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh-CCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 227 vG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~-~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
||. ..-+|--.+..+-+..||..||+|||.+|++..|..|++...+ +.-+|.|+||||+.. ++-++++. .++
T Consensus 135 VGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~----eTg 208 (321)
T COG1441 135 VGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTR--AESRAFAR----ETG 208 (321)
T ss_pred eeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCCh--HHHHHHHH----hcC
Confidence 995 4456667778888889999999999999999999999999874 333467999999864 34456664 699
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
|.||+||++.. .||.- -....+..|+|||+.+| +..+.+.++.|++.|+..+++|.+||++|+...+.+|+-+
T Consensus 209 IAIAWDEs~re-adF~~-e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 209 IAIAWDESLRE-ADFAF-EAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred eeEeecchhcc-ccccc-ccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 99999999886 44422 22346889999999999 9999999999999999999999999999999999998764
No 38
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.87 E-value=3.8e-21 Score=164.16 Aligned_cols=115 Identities=26% Similarity=0.471 Sum_probs=99.0
Q ss_pred EEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCCHHH
Q 013681 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTLNF 146 (438)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~~~~ 146 (438)
.+++++.+++|++ ||++|.++.+.++.++|+|+|++|++||||+.+.+. +.+ .....+.+ +.|.+.|+++.+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~--~~~~~~~~~l~~~l~g~~~~~~~~ 77 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAE--TVASALEDYLAPLLIGQDPDDIED 77 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHH--HHHHHHHHTHHHHHTTSBTTGHHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhH--HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678888999999 999999999999999999999999999999998764 222 12223344 789999999999999
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg 188 (438)
+++.+++...+ .+++++|||+||||++||..|+|||+|||
T Consensus 78 ~~~~~~~~~~~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 78 IWQELYRLIKG--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999877655 47899999999999999999999999998
No 39
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.84 E-value=1.1e-20 Score=159.75 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=95.6
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN 388 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~ 388 (438)
||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+++|++|+++++++..++|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCC---CceeeeCcEEecCC-CCCccce
Q 013681 389 TPFLLSEDPFV---GGCEVSGAIYNFTN-ARGQGGF 420 (438)
Q Consensus 389 ~pl~~~~~~~~---~~~~~~~G~~~~p~-~pGlGv~ 420 (438)
|++. ++++. +++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 5433 44544 3456 999999999 9999997
No 40
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=4.3e-17 Score=160.37 Aligned_cols=283 Identities=25% Similarity=0.315 Sum_probs=195.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc-----------------hHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG-----------------DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~-----------------~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.++|-|+|.+++|..|++-++. ..-++ ....++..+++ +.|.|+|.+..++..+.+.|...
T Consensus 18 npTVEveV~~~~g~~g~a~vPS-GAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~LiG~da~dQ~~ID~~liel 96 (423)
T COG0148 18 NPTVEVEVTLEDGFGGRAAVPS-GASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALIGLDATDQALIDSLLIEL 96 (423)
T ss_pred CceEEEEEEEcCCCcceeecCC-CCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 5789999999999988874432 11121 11124444544 78999999999988877776543
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-Cceeee--eeeC------------------C--CCHHH
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTA--ITIP------------------A--VSPAE 207 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~~ip~~--~~i~------------------~--~~~~~ 207 (438)
- .++..+.+.-|+.+|..-+.|..+|+|||++|||.+ ..+|+. ..+. . .+..+
T Consensus 97 DGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~e 176 (423)
T COG0148 97 DGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKE 176 (423)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeecccccCCCCccceeEEEeecChHHHHH
Confidence 1 122346788999999999999999999999999974 334432 1111 1 12222
Q ss_pred HHHHH-------HH-HhhcCCcEEEEecC---CCch---HHHHH-HHHHHhhC----CCcEEEEeCC-------C-----
Q 013681 208 ASELA-------SK-YCKLGFSTLKLNVG---RNIT---ADFDV-LQAIHAVH----PHCSFILDAN-------E----- 256 (438)
Q Consensus 208 ~~~~~-------~~-~~~~Gf~~iKlKvG---~d~~---~di~~-l~aiR~~~----~~~~L~vDAN-------~----- 256 (438)
..+.. .+ +.+.|..+-+=.=| ++++ +-++. ++++.+++ .++.|.+|+- +
T Consensus 177 alr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~ 256 (423)
T COG0148 177 ALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLE 256 (423)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeec
Confidence 22211 11 22344444311111 2333 33443 46777764 3588999983 2
Q ss_pred --CCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEE
Q 013681 257 --GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 257 --~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~ 332 (438)
.++.+|-++++..| ++|++ .+||+|+..+||+++++|.+.+ ...+-|..|. -++++.-+++-++.+..+.+.
T Consensus 257 ~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiL 332 (423)
T COG0148 257 GESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDKVQIVGDDLFVTNPKRLKKGIEKGAANAIL 332 (423)
T ss_pred CcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCeEEEECCcceecCHHHHHHHHHhccCceEE
Confidence 45777888888776 57875 5999999999999999999732 1236788887 667778889999999999999
Q ss_pred ecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 333 IKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 333 lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
+||..+| +|++.+.+.+|+++|+..++++.. |+. -..++|+|.+++++
T Consensus 333 IK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~ag 382 (423)
T COG0148 333 IKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNAG 382 (423)
T ss_pred EechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCCC
Confidence 9999999 999999999999999999998743 332 23578999887664
No 41
>PRK08350 hypothetical protein; Provisional
Probab=99.78 E-value=4.6e-17 Score=158.88 Aligned_cols=287 Identities=15% Similarity=0.166 Sum_probs=196.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC---CCCchHHHHHHHHHH-HhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP---LVTGDQTKALVKVRE-ACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~---~~s~~~~~~~~~~~~-i~~~l~g~~~ 141 (438)
+|++|..+.+ -.|+ ..++|.|+|+|++| .|.+.++.-. .|......++..+++ +.|.|+|.++
T Consensus 3 ~I~~i~aReI--------lDSR----GnPTVEveV~~~~g-~gra~vPSD~d~~ry~~gV~~AV~nVn~~Iap~LiG~d~ 69 (341)
T PRK08350 3 VIENIIGRVA--------VLRG----GKYSVEVDVITDSG-FGRFAAPIDENPSLYIAEAHRAVSEVDEIIGPELIGFDA 69 (341)
T ss_pred eeEEEEEEEE--------EcCC----CCceEEEEEEECCc-EEEEEecCCCCcccccchHHHHHHHHHHHHHHHHcCCCH
Confidence 5777776543 2222 25789999999998 7777665421 122222344555554 7899999999
Q ss_pred CCHHHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeee--eeeCCCCHHHHH--HH
Q 013681 142 TTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTA--ITIPAVSPAEAS--EL 211 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~--~~i~~~~~~~~~--~~ 211 (438)
.++..+.+.|.. +.| ...+.+.-|+.+|..-+.|...|+|||++|||. ...+|+. --+..++.|.|. .+
T Consensus 70 ~dQ~~ID~~mie-lDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 70 SEQELIDSYLWE-IDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHh-ccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 998888887755 222 223568899999999999999999999999884 3445542 222222332221 00
Q ss_pred HHHHhhcCCcEEEEecCCCchHHHHH-HHHHHhhC----CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 212 ASKYCKLGFSTLKLNVGRNITADFDV-LQAIHAVH----PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~d~~~di~~-l~aiR~~~----~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
+-+ ..+=|+.+|=-+-.+.++-++. +++|.++| .|+.+.+|+...+|.+|.+ +-+++|++ .+|| |+..
T Consensus 149 a~~-~~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE-p~~E 221 (341)
T PRK08350 149 LME-ITDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK-PIGD 221 (341)
T ss_pred hhh-hHHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-cCCc
Confidence 000 0111222221111144555665 47777765 2689999998568888876 77788986 5999 9996
Q ss_pred CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-c
Q 013681 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-E 364 (438)
Q Consensus 287 ~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-e 364 (438)
+ +++++|++. -..+-|.+|.-..+-... +.++++.+.+||..+| ++++++.+.+|+++|..+++++.. |
T Consensus 222 ~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGE 292 (341)
T PRK08350 222 E--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYE 292 (341)
T ss_pred c--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCC
Confidence 5 999999972 246888988865554333 7889999999999999 999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhcCCcce
Q 013681 365 TRLATGFALHLAAGLGCIKY 384 (438)
Q Consensus 365 s~ig~~a~~hla~al~~~~~ 384 (438)
+ --..++|||.+++++..
T Consensus 293 T--eD~~IAdLaVa~~agqI 310 (341)
T PRK08350 293 S--ADEALPHLAVGLRCPAM 310 (341)
T ss_pred C--cchhHHHHHHHhCCCcc
Confidence 3 23578899999887643
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.65 E-value=4.1e-16 Score=119.76 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=60.9
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 237 VLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 237 ~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
+|++||+. ||++.|++|+|++|++++|++++++|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999995 99999999999999999999999999996 39999999999999999986 699999987
No 43
>PTZ00378 hypothetical protein; Provisional
Probab=99.65 E-value=1.5e-13 Score=141.31 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=195.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcE-----EEEEEecCCC------C-Cc-hHHHHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV-----GWGEVAVVPL------V-TG-DQTKALVKVRE 131 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~-----G~GE~~~~~~------~-s~-~~~~~~~~~~~ 131 (438)
+.|++|..+.+- .|. ..+.|-|+|++++|.. -.||+..++. | .+ ....++. +.
T Consensus 49 ~~I~~i~areIl--------DSr----GnPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~--~~ 114 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPA----GETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ--NS 114 (518)
T ss_pred CeeeEEEEEEEE--------cCC----CCeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--hh
Confidence 448887766532 222 2567888899988843 1125554422 1 11 1112222 45
Q ss_pred HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC--------CCceeeee-
Q 013681 132 ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA--------SNSLSTAI- 198 (438)
Q Consensus 132 i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~--------~~~ip~~~- 198 (438)
+.|.|+|.++.++..+.+.|.+.- ......++..|+.||..-+.|+..++|||++|++. ...+|+..
T Consensus 115 i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~ 194 (518)
T PTZ00378 115 YFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCI 194 (518)
T ss_pred hHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccce
Confidence 899999999999888777776531 12234678999999999999999999999999873 12344321
Q ss_pred -------------------eeCC----CCHHHHHHHH-HHH--hhcCCcEEEEecCC----------CchHHHHH-HHHH
Q 013681 199 -------------------TIPA----VSPAEASELA-SKY--CKLGFSTLKLNVGR----------NITADFDV-LQAI 241 (438)
Q Consensus 199 -------------------~i~~----~~~~~~~~~~-~~~--~~~Gf~~iKlKvG~----------d~~~di~~-l~ai 241 (438)
.+|. .+..+..+.. +-+ +..|+. .-+|. +.++-+++ .++|
T Consensus 195 NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~eAi 271 (518)
T PTZ00378 195 TFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATEAL 271 (518)
T ss_pred EeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 0122 2333332222 111 112322 12221 12333444 3666
Q ss_pred HhhC--C--CcEEEEeCC----------------------C------------CCCHHHHHHHHHHh-hhCCCCCceEec
Q 013681 242 HAVH--P--HCSFILDAN----------------------E------------GYTSEEAVEVLGKL-NDMGVIPVLFEQ 282 (438)
Q Consensus 242 R~~~--~--~~~L~vDAN----------------------~------------~~s~~~A~~~l~~L-~~~~l~~~~iEq 282 (438)
+++| | ++.|.+|+- + .+|.+|.+++++.| ++|.--+.+||+
T Consensus 272 ~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iIvsIED 351 (518)
T PTZ00378 272 RAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIVVYVED 351 (518)
T ss_pred HHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCceEEEec
Confidence 6654 3 477777751 1 14578888888665 678600358999
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEEcCCCCC--HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEE-
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRS--LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM- 358 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~--~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~- 358 (438)
|+..+||+++++|++.+ ...+-|..|.-..+ +.-+++.++...++.+.+||+.+| ++++++.+.+|+++|..++
T Consensus 352 p~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~v~ 429 (518)
T PTZ00378 352 THCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRAVT 429 (518)
T ss_pred CCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCCcEEc
Confidence 99999999999999753 23578888874444 788899999999999999999999 9999999999999999987
Q ss_pred --EccCCchhHHHHHHHHHHhhcCCc
Q 013681 359 --IDGMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 359 --~~s~~es~ig~~a~~hla~al~~~ 382 (438)
+++. |+ --..++|||.+++..
T Consensus 430 v~vShR--SG-eD~~IAdLAVa~ga~ 452 (518)
T PTZ00378 430 VLVQTL--AG-NAATAAHLAVAMGAR 452 (518)
T ss_pred cccCCC--cC-CccHHHHHHHHcCCC
Confidence 6653 33 456789999988764
No 44
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.9e-13 Score=128.13 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=168.9
Q ss_pred HHHHH-HhhHhcCC--CCCCHHHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC---CC--c
Q 013681 127 VKVRE-ACQFLRQS--PPTTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA---SN--S 193 (438)
Q Consensus 127 ~~~~~-i~~~l~g~--~~~~~~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~---~~--~ 193 (438)
..+++ +.|.|++. ++.+...+.+.|... .| .....++-|+.+|+.-+-|...|+|||+.+..- .. -
T Consensus 67 ~niN~~i~pali~~~~dv~~Q~~iD~~mi~L-DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~v 145 (433)
T KOG2670|consen 67 GNINNTIAPALIKKNLDVTDQKAIDNFMIEL-DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYV 145 (433)
T ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHhc-cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceE
Confidence 33444 68888876 677777777766542 22 123568999999999999999999999977532 21 2
Q ss_pred eeeee--eeC--------------------CCCHHHHHHH-------HHHHhhcCCcEEEEecC------CCc---hHHH
Q 013681 194 LSTAI--TIP--------------------AVSPAEASEL-------ASKYCKLGFSTLKLNVG------RNI---TADF 235 (438)
Q Consensus 194 ip~~~--~i~--------------------~~~~~~~~~~-------~~~~~~~Gf~~iKlKvG------~d~---~~di 235 (438)
+|+.+ .+. ..+.++..+. .+..+..-|..---.|| +++ ++-+
T Consensus 146 lPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L 225 (433)
T KOG2670|consen 146 LPVPAFNVLNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEAL 225 (433)
T ss_pred ecccceeeecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHH
Confidence 34321 111 1122222211 11112222222222333 133 3444
Q ss_pred HHH-HHHHhhC--CCcEEEEeCC-------CC---------------CCHHHHHHHHHH-hhhCCCCCceEecCCCCCCh
Q 013681 236 DVL-QAIHAVH--PHCSFILDAN-------EG---------------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDW 289 (438)
Q Consensus 236 ~~l-~aiR~~~--~~~~L~vDAN-------~~---------------~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~ 289 (438)
+++ ++|++.+ ..++|.+|.. +. ++.++..++.+. +++|.+ ..||+|+.++||
T Consensus 226 ~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw 303 (433)
T KOG2670|consen 226 DLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDW 303 (433)
T ss_pred HHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhH
Confidence 543 6666665 3688888873 11 366776655544 578876 699999999999
Q ss_pred hhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chh
Q 013681 290 SGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETR 366 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ 366 (438)
+.+..+.. .+++-|..|. .++++..+++.++..+++.+-+|+..+| +|++.+.+.+|++.|.++|++... |+
T Consensus 304 ~~w~~~~~----~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGET- 378 (433)
T KOG2670|consen 304 EAWSKFFK----EVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGET- 378 (433)
T ss_pred HHHHHHhh----ccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCc-
Confidence 99999875 5899999988 7888888999999999999999999999 999999999999999999998652 32
Q ss_pred HHHHHHHHHHhhcCCcc
Q 013681 367 LATGFALHLAAGLGCIK 383 (438)
Q Consensus 367 ig~~a~~hla~al~~~~ 383 (438)
--..++.|..+++++.
T Consensus 379 -eDtFIaDL~VGl~tgq 394 (433)
T KOG2670|consen 379 -EDTFIADLVVGLGTGQ 394 (433)
T ss_pred -ccchHHHhhhhhccce
Confidence 2346778888877654
No 45
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.39 E-value=2.4e-11 Score=115.26 Aligned_cols=285 Identities=17% Similarity=0.199 Sum_probs=189.4
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc---hHH-----HHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG---DQT-----KALVKVR-EACQFLRQSPPTTLNFALDEIARILPGSE-FAS 162 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~---~~~-----~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~s 162 (438)
.+.+-|.+..++|.+-||.|+...+ |+ ..+ .....++ .+.|.|+|.+....-.......+.+.++. ..+
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQY-SGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtA 128 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQY-SGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTA 128 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEe-cCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHH
Confidence 4567788888899999999997643 33 111 1111122 26789999886543222112222223332 356
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHhC----CC--CCceeeeeeeCCC---CHHHHHHHHHHHhhcCCcEEEEecCCCchH
Q 013681 163 VRAGVEMALIDAVANSIDIPLWRLFG----GA--SNSLSTAITIPAV---SPAEASELASKYCKLGFSTLKLNVGRNITA 233 (438)
Q Consensus 163 a~~aie~AL~Dl~gk~~g~Pl~~Llg----g~--~~~ip~~~~i~~~---~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~ 233 (438)
++.|+.+||.|+.+-..+..-.+.+- -+ .+++|++...+-. ..+.|.-..-..+-.|.-.-.-++|.|-++
T Consensus 129 vrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~~ 208 (410)
T COG3799 129 VRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGEK 208 (410)
T ss_pred HHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchHH
Confidence 79999999999999887766554443 32 3678877654321 123332111111112211111124554444
Q ss_pred HHHHHHHH----HhhC---CCcEEEEeCCCC------CCHHHHHHHHHHhhh--CCCCCceEecCCCCC----ChhhHHH
Q 013681 234 DFDVLQAI----HAVH---PHCSFILDANEG------YTSEEAVEVLGKLND--MGVIPVLFEQPVHRD----DWSGLHD 294 (438)
Q Consensus 234 di~~l~ai----R~~~---~~~~L~vDAN~~------~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~~----d~~~~a~ 294 (438)
-.+.++.+ +..+ ....|.+|..|. +++...-.|+.+|++ -++ +.+||-|...+ |++.|++
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~a~ 287 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLLAA 287 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHHHH
Confidence 44444444 3333 346899999874 577666677777763 233 35899999754 6778888
Q ss_pred HHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHH
Q 013681 295 VSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGF 371 (438)
Q Consensus 295 L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a 371 (438)
+.+.+. .-+++.|..||.|.+.+|+....+..+++.+|+|-..+| +.+..+.+.+|+.+.+..++++. .|+.++...
T Consensus 288 i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~ 367 (410)
T COG3799 288 ITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSART 367 (410)
T ss_pred HHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhh
Confidence 876552 357899999999999999999999999999999999999 99999999999999999998875 599999999
Q ss_pred HHHHHhhc
Q 013681 372 ALHLAAGL 379 (438)
Q Consensus 372 ~~hla~al 379 (438)
++|++.+.
T Consensus 368 cvHValAt 375 (410)
T COG3799 368 CVHVALAT 375 (410)
T ss_pred hhhhhhhh
Confidence 99998764
No 46
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.35 E-value=1.2e-11 Score=113.53 Aligned_cols=186 Identities=14% Similarity=0.229 Sum_probs=118.9
Q ss_pred CceeeeeeeCCCC---HHHHH-HHHHHHhhcC-CcEEEEecCCCchHHHHHHHHHHh----hC-C--CcEEEEeCCCC--
Q 013681 192 NSLSTAITIPAVS---PAEAS-ELASKYCKLG-FSTLKLNVGRNITADFDVLQAIHA----VH-P--HCSFILDANEG-- 257 (438)
Q Consensus 192 ~~ip~~~~i~~~~---~~~~~-~~~~~~~~~G-f~~iKlKvG~d~~~di~~l~aiR~----~~-~--~~~L~vDAN~~-- 257 (438)
.++|++.+.+-+. .+.|. ..+. .+-.| |..+. |+|.+-+.=.+.++.++. ++ + ...|.+|..|.
T Consensus 4 ~pvpif~QsGddry~n~DKmIlK~~d-vlPH~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG 81 (248)
T PF07476_consen 4 EPVPIFAQSGDDRYTNVDKMILKGVD-VLPHALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIG 81 (248)
T ss_dssp ----EE---TT-TTHHHHHHHHTT-S-EEEETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHH
T ss_pred CCCcccccCCchhhhhHHHHHHhCCC-cCchHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHH
Confidence 3567766655432 34442 2222 22334 78888 999876666666655554 33 3 46899999875
Q ss_pred --C--CHHHHHHHHHHhh----hCCCCCceEecCCCCC----ChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHH
Q 013681 258 --Y--TSEEAVEVLGKLN----DMGVIPVLFEQPVHRD----DWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 258 --~--s~~~A~~~l~~L~----~~~l~~~~iEqPl~~~----d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
| +++...+|+.+|+ +|.+ .||-|+..+ |++.|++|++.+++ .+++.|.+||.+.+.+|++.+.+
T Consensus 82 ~~f~~d~~~~adYl~~l~~aA~P~~L---~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~d 158 (248)
T PF07476_consen 82 LAFDNDPDRMADYLAELEEAAAPFKL---RIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFAD 158 (248)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHTTS-E---EEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCee---eeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHh
Confidence 3 5777778888776 4554 899999865 57888888887753 57889999999999999999999
Q ss_pred cCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHhhcCCc
Q 013681 325 ENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 325 ~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~al~~~ 382 (438)
.++.|++|+|..-+| +..+.+.+-+|+++|++.+.++. .|+.++.-+++|+|.+.+..
T Consensus 159 a~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~p~ 218 (248)
T PF07476_consen 159 AKAADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVCVHVALATRPD 218 (248)
T ss_dssp TT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT-S
T ss_pred cCCcCEEEecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHHHHHHHhcCHH
Confidence 999999999999998 99999999999999999999875 59999999999999886544
No 47
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=99.17 E-value=3.5e-10 Score=110.84 Aligned_cols=166 Identities=21% Similarity=0.349 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHH-HhhcCCcEEEEecCCCchHHHHHHHHHHhhC--CCcEEEEeCCC-------CCCHHHHHHHHHHh-
Q 013681 202 AVSPAEASELASK-YCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE-------GYTSEEAVEVLGKL- 270 (438)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~--~~~~L~vDAN~-------~~s~~~A~~~l~~L- 270 (438)
+.++++..+.+.+ ..+.||.. ++++|.|+... +.+ .+-...++... ..|.+|.+++...|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 4566666554433 34578877 77776543211 122 12334444332 36889999888775
Q ss_pred hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 271 ~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
++|.+ .+||+|+..+||+++++|++.+. -.+-|.+|. ..+++..+++.++.++++.+.+|++.+| +|++++.+.
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~g--~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRLG--DKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHHT--TTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhhh--cceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 68885 59999999999999999997431 238899888 6677888899999999999999999999 999999999
Q ss_pred HHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 349 ATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
+|+++|..+++++.. |+ --..++|||.++++.
T Consensus 223 ~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a~ 255 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGET--EDTFIADLAVGLGAG 255 (295)
T ss_dssp HHHHTT-EEEEE--SS----S--HHHHHHHHTT-S
T ss_pred HHHHCCceeeccCCCCCc--CchhHHHHHhccCcC
Confidence 999999999998753 33 235788999998765
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.03 E-value=9.3e-09 Score=97.75 Aligned_cols=143 Identities=22% Similarity=0.336 Sum_probs=119.2
Q ss_pred HHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCc
Q 013681 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (438)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~ 248 (438)
.+++......|+..++..++++++.+.++.+.+.||..|++++|. +.+...+.++++|+..+ +
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 455555677888889988899999998988888899999999874 45567788899998544 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHhhhCCCCCceE-------ec-CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 249 SFILDANEGYTSE-EAVEVLGKLNDMGVIPVLF-------EQ-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 249 ~L~vDAN~~~s~~-~A~~~l~~L~~~~l~~~~i-------Eq-Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
.+.++.|.+|+.+ ++.++++.+++.++. +| +| +....+++..+++++ ..++||.++..+.+.+++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 7899999999876 899999999999874 78 76 666678888887765 688999999999999999
Q ss_pred HHHHHcCCccEEEec
Q 013681 320 QKVMQENLASVVNIK 334 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk 334 (438)
.++++.+.+|.+++=
T Consensus 199 ~~~l~~~gad~V~ig 213 (231)
T cd02801 199 LRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999998778988874
No 49
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.98 E-value=7.4e-09 Score=104.33 Aligned_cols=121 Identities=20% Similarity=0.334 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC------------CchHH-------------HHHHHHHHh-hCCCcEEEEeCC-----
Q 013681 207 EASELASKYCKLGFSTLKLNVGR------------NITAD-------------FDVLQAIHA-VHPHCSFILDAN----- 255 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~------------d~~~d-------------i~~l~aiR~-~~~~~~L~vDAN----- 255 (438)
++.+.++...+.||..|+|+.|. +...| ++.+++||+ +++++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34566777888999999999852 12233 889999998 578988998855
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEe-----------cCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVIPVLFE-----------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iE-----------qPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
++|+.++++++++.|+++++ .||| .|+. ..+++.++++++ .+++||+.++.+.++++++++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 89999999999999999987 4999 4663 344566666664 689999999999999999999
Q ss_pred HHcCCccEEEe
Q 013681 323 MQENLASVVNI 333 (438)
Q Consensus 323 l~~~a~d~i~l 333 (438)
++.+.+|+|.+
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99998998765
No 50
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.65 E-value=5.7e-07 Score=90.73 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCC---------------------C----chHHHHHHHHHHh-hCCCcEEEEeCC------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFILDAN------ 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~---------------------d----~~~di~~l~aiR~-~~~~~~L~vDAN------ 255 (438)
..+.++..++.||..|.|..|. + .+-.++.|++||+ +++++.|.+|.|
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 3556677788999999998762 1 2235678999998 578999999998
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------cCCCC--CC----------hhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR--DD----------WSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~--~d----------~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
++|+.++++++++.|++.++ .||| +|... .+ ++..++++ +.+++||++++.+.++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t~ 304 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGV--DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRTR 304 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCCH
Confidence 68999999999999999987 4998 66632 11 22333444 4689999999999999
Q ss_pred HHHHHHHHcCCccEEEec
Q 013681 317 NDVQKVMQENLASVVNIK 334 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk 334 (438)
++++++++.+.+|+|.+=
T Consensus 305 ~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 305 AAMEQALASGAVDGIGLA 322 (338)
T ss_pred HHHHHHHHcCCCCeeeeC
Confidence 999999999999998763
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.55 E-value=1.3e-06 Score=87.52 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCC------------C---------c----hHHHHHHHHHHh-hCCCcEEEEeCC------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR------------N---------I----TADFDVLQAIHA-VHPHCSFILDAN------ 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~------------d---------~----~~di~~l~aiR~-~~~~~~L~vDAN------ 255 (438)
..+.++...+.||..|+|+.+. + + +-..+.+++||+ .++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3455677788999999999862 1 1 123788999998 478888888777
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------cCCC---------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~---------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
++|+.++++++++.|+++++. ||+ +|.. ..+++..+.+++ .+++||+..+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHH
Confidence 458999999999999999874 884 6654 223444455543 678999999999999999
Q ss_pred HHHHHcCCccEEEe
Q 013681 320 QKVMQENLASVVNI 333 (438)
Q Consensus 320 ~~ll~~~a~d~i~l 333 (438)
.++++.+.+|+|.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999888998776
No 52
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.48 E-value=2e-06 Score=87.32 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCC---------------------C----chHHHHHHHHHHh-hCCCcEEE-----EeCC-
Q 013681 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFI-----LDAN- 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~---------------------d----~~~di~~l~aiR~-~~~~~~L~-----vDAN- 255 (438)
+.+.|+...+.||..|+|..+. + .+..++.+++||+ +++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 3455677788999999998731 1 3446788999999 57775554 4554
Q ss_pred CCCCHHHHHHHHHHhhhCCCC-----CceEecCCCCCC--------hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVI-----PVLFEQPVHRDD--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~-----~~~iEqPl~~~d--------~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
++|+.++++++++.|+++++. ..|.|+|++..+ .+.+++++ +.+++||+..+.+.++++++++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 678999999999999998742 125688875431 22234444 4789999999999999999999
Q ss_pred HHcCCccEEEe
Q 013681 323 MQENLASVVNI 333 (438)
Q Consensus 323 l~~~a~d~i~l 333 (438)
++.+.+|+|.+
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999998765
No 53
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=98.13 E-value=8.8e-05 Score=64.48 Aligned_cols=95 Identities=26% Similarity=0.233 Sum_probs=65.2
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC----------------CCc-hHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.+++.|+|.+++|..|.+-++.... |.+ ....++..+++ +.|.|+|.++.++.++.+.|.+.
T Consensus 16 ~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~l 95 (132)
T PF03952_consen 16 NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGLDPTDQEEIDQILIEL 95 (132)
T ss_dssp -EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHH
T ss_pred CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhcchhhHHHhCccceec
Confidence 6789999999999888887764311 111 12234444554 78999999999998887777653
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
- ......++..|+.+|++-+.|+..++|||++|
T Consensus 96 DgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 96 DGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 1 11233678999999999999999999999975
No 54
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.43 E-value=0.0061 Score=60.85 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=103.5
Q ss_pred CceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC-CCcEEEEeC
Q 013681 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-PHCSFILDA 254 (438)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~-~~~~L~vDA 254 (438)
...|+..++...+|+++.+.++...+.||..|-+..|- +++.-.+.++++|+.. +++.+.|=-
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34677778888899999988888888999999998872 2334455677888753 344444444
Q ss_pred CCCCC-HHHHHHHHHHhhhCCCC-----CceEecCCCC--CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 255 NEGYT-SEEAVEVLGKLNDMGVI-----PVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 255 N~~~s-~~~A~~~l~~L~~~~l~-----~~~iEqPl~~--~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
.-+|+ .+++.++++.+++.++. ...-+|.... -+|+..+++.+ ..++||...=.+.+.++..++++..
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhcc
Confidence 44565 45688999999987643 2222453322 26777777765 5789999988999999999999888
Q ss_pred CccEEEecCCcch
Q 013681 327 LASVVNIKLAKFG 339 (438)
Q Consensus 327 a~d~i~lk~~~~G 339 (438)
.+|.|.+==..+|
T Consensus 217 g~DgVmiGRg~l~ 229 (312)
T PRK10550 217 GCDAVMIGRGALN 229 (312)
T ss_pred CCCEEEEcHHhHh
Confidence 8999988554444
No 55
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.23 E-value=0.005 Score=54.09 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=60.9
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC--CCc-h----HHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL--VTG-D----QTKALVKV-REACQFLRQSPPTTLNFALDEIARILPGSE-FASV 163 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~--~s~-~----~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~sa 163 (438)
-+.+.|.+..+||.+.||.|+..-+ .++ + ..+....+ ..+.|.|.|.+.......-+.+.....|.. ..++
T Consensus 50 gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtAi 129 (159)
T PF05034_consen 50 GESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTAI 129 (159)
T ss_dssp EEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HHH
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhHH
Confidence 5678899999999999999997632 122 1 11222223 347899999999988877777776544432 3578
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 164 RAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 164 ~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
+.||.+||+|+.|+..+.-..+.+
T Consensus 130 RYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 130 RYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHhHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999877655544
No 56
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.12 E-value=0.015 Score=58.32 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=98.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN~~ 257 (438)
.|+..++...+++++.+.++...+.||..|-+..|- +++.-.+.++++|+.. ++.+.+=.+.+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G 143 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTG 143 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEcc
Confidence 455567777899999888887778999999999882 2344455677777743 22233322355
Q ss_pred CCH--HHHHHHHHHhhhCCCCCceE-------ecCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 258 YTS--EEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 258 ~s~--~~A~~~l~~L~~~~l~~~~i-------EqPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
|+. ++++++++.+++.++. +| +|... ..+|+..+++++ .+++||.+.=.+.+.++++++++...
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccC
Confidence 654 3688999999988864 55 33332 246777777764 68899999889999999999998778
Q ss_pred ccEEEecCCcch
Q 013681 328 ASVVNIKLAKFG 339 (438)
Q Consensus 328 ~d~i~lk~~~~G 339 (438)
+|.+++=-..+|
T Consensus 218 adgVmiGR~~l~ 229 (321)
T PRK10415 218 ADALMIGRAAQG 229 (321)
T ss_pred CCEEEEChHhhc
Confidence 999998654443
No 57
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.89 E-value=0.012 Score=58.61 Aligned_cols=144 Identities=23% Similarity=0.360 Sum_probs=96.3
Q ss_pred HHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCC
Q 013681 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPH 247 (438)
Q Consensus 184 ~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~ 247 (438)
..++......-|+...+...+|+.+.+.++...+.||..|-+..|- +++.-.+.|+++++..+
T Consensus 44 ~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~- 122 (309)
T PF01207_consen 44 IRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP- 122 (309)
T ss_dssp HHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-
T ss_pred eecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-
Confidence 3455544445677788888899999888887766799999999982 34555667788887543
Q ss_pred cEEEEeCCCCCC--HHHHHHHHHHhhhCCCCCceE-------ecCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHH
Q 013681 248 CSFILDANEGYT--SEEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN 317 (438)
Q Consensus 248 ~~L~vDAN~~~s--~~~A~~~l~~L~~~~l~~~~i-------EqPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~ 317 (438)
+.+.+-.--+|+ .++.+++++.|++.++. +| +|--. +-||+..+++++ ..++||.+.=.+.+.+
T Consensus 123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~ 196 (309)
T PF01207_consen 123 IPVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPE 196 (309)
T ss_dssp SEEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHH
T ss_pred cceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHH
Confidence 455555555555 78899999999999864 55 44443 557999998886 6789999999999999
Q ss_pred HHHHHHHcCCccEEEec
Q 013681 318 DVQKVMQENLASVVNIK 334 (438)
Q Consensus 318 d~~~ll~~~a~d~i~lk 334 (438)
|+.++++.-.+|.+++=
T Consensus 197 d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 197 DAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHCCCH-SSEEEES
T ss_pred HHHHHHHhcCCcEEEEc
Confidence 99999887678888864
No 58
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.82 E-value=0.084 Score=53.24 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=100.5
Q ss_pred HHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh--CC
Q 013681 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HP 246 (438)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~--~~ 246 (438)
.++.-....-|+..++...+|+++.+.++...+.||..|-+..|- +++.-.+.++++|+. .|
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344433445577788888999999988888888899999988762 233445677888874 23
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe--------cC--------CCCCChhhHHHHHHhhccc-cCCeEE
Q 013681 247 -HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE--------QP--------VHRDDWSGLHDVSNFARDT-YGISVV 308 (438)
Q Consensus 247 -~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE--------qP--------l~~~d~~~~a~L~~~~r~~-~~iPIa 308 (438)
.+++|+-..+.-+.+++.++++.+++.++. +|. |- +++-+|+..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 555565433333567788999999887764 342 11 12345777777764 4 379999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.=.+.+++|+.++++ + +|.|++==.
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIGRa 235 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIGRA 235 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEcHH
Confidence 8888999999999997 3 888887443
No 59
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.79 E-value=0.042 Score=56.50 Aligned_cols=124 Identities=13% Similarity=0.179 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCcEEEEec---CC-------------------CchH----HHHHHHHHHh-hCCC--cEEEEeC-----
Q 013681 209 SELASKYCKLGFSTLKLNV---GR-------------------NITA----DFDVLQAIHA-VHPH--CSFILDA----- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKv---G~-------------------d~~~----di~~l~aiR~-~~~~--~~L~vDA----- 254 (438)
.+.|+...+.||..+.|.. |- +++. -++.|++||+ ++++ +.+++.+
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 3456667789999999997 41 1222 3567899998 4666 3344432
Q ss_pred -------------CCCCCHHHHHHHHHHhhhCCCCCceEec-------CC---CCCC-hh-hHHHHHHhhccccCCeEEE
Q 013681 255 -------------NEGYTSEEAVEVLGKLNDMGVIPVLFEQ-------PV---HRDD-WS-GLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 255 -------------N~~~s~~~A~~~l~~L~~~~l~~~~iEq-------Pl---~~~d-~~-~~a~L~~~~r~~~~iPIa~ 309 (438)
+++++.++++++++.|++.++. +|+= +. ++.. .. .+..+++.+++.+++||.+
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 310 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM 310 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE
Confidence 4478999999999999987753 5532 11 0000 00 1122333344568899998
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEec
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-=.+.++++..++++.+.+|.|.+=
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeec
Confidence 8889999999999999989987753
No 60
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.052 Score=54.47 Aligned_cols=144 Identities=21% Similarity=0.309 Sum_probs=108.3
Q ss_pred CceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCC
Q 013681 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDAN 255 (438)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN 255 (438)
...|+...+...+|+.+.+.++...+.||..|-|..|- +++.-.+.|+++++..+++.+.|=--
T Consensus 65 ~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiR 144 (323)
T COG0042 65 EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIR 144 (323)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 34566677888899999998988889999999999882 34555667888888654777777777
Q ss_pred CCCCHHH--HHHHHHHhhhCCCCCceE-----ecC-CCCCChhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcC
Q 013681 256 EGYTSEE--AVEVLGKLNDMGVIPVLF-----EQP-VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 256 ~~~s~~~--A~~~l~~L~~~~l~~~~i-----EqP-l~~~d~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
-+|+.++ +.++++.+++.+..-.++ +|= ..+-||+..+++.+ ..+ +||.+.-.+.+.++.++.++..
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 145 LGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred cccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 7887665 778888888876531122 111 11247888998886 456 9999999999999999999988
Q ss_pred CccEEEecCCcch
Q 013681 327 LASVVNIKLAKFG 339 (438)
Q Consensus 327 a~d~i~lk~~~~G 339 (438)
.+|.+++-=.-.|
T Consensus 221 g~DgVMigRga~~ 233 (323)
T COG0042 221 GADGVMIGRGALG 233 (323)
T ss_pred CCCEEEEcHHHcc
Confidence 8999988654443
No 61
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.59 E-value=0.076 Score=53.78 Aligned_cols=120 Identities=16% Similarity=0.282 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHhh-CCC--cEEEEeC----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDA----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~~-~~~--~~L~vDA----N~ 256 (438)
.+.|+...+.||..+-|..+. +++. -++.+++||+. +++ +.+|+-+ .+
T Consensus 144 ~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~ 223 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEG 223 (343)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCC
Confidence 455667778999999999831 1222 35678999984 666 4566655 35
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceEe-------cC------CCC-----C-ChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 257 GYTSEEAVEVLGKLNDMG-VIPVLFE-------QP------VHR-----D-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~iE-------qP------l~~-----~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
+++.++++++++.|++.+ +. ||+ ++ .++ . +++..+.+ ++.+++||...=.+.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARI----KQAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHH----HHHcCCCEEeeCCCCCH
Confidence 689999999999999876 43 554 21 111 1 12322333 34678999998889999
Q ss_pred HHHHHHHHcCCccEEEec
Q 013681 317 NDVQKVMQENLASVVNIK 334 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk 334 (438)
++..++++.+.+|.|.+=
T Consensus 298 ~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 298 AEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHHHcCCCCeeeec
Confidence 999999999889987763
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.55 E-value=0.044 Score=53.86 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=94.3
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-----------CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-----------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~ 261 (438)
..|+..++...+++++.+.++.+.+.|+..|-+.++. +.+.-.+.++++|+.. ++.+.+-.+..++.+
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~ 176 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE 176 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence 3566677766788999888888888899999999873 1223345678888754 677888888889999
Q ss_pred HHHHHHHHhhhCCCCCceEecC---------------CCCC-------------ChhhHHHHHHhhcccc--CCeEEEcC
Q 013681 262 EAVEVLGKLNDMGVIPVLFEQP---------------VHRD-------------DWSGLHDVSNFARDTY--GISVVADE 311 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP---------------l~~~-------------d~~~~a~L~~~~r~~~--~iPIa~dE 311 (438)
+..+.++.+.+.++. +|.=+ .... .++..++++ +.. ++||...=
T Consensus 177 ~~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~G 250 (289)
T cd02810 177 DIVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVG 250 (289)
T ss_pred HHHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEEC
Confidence 999999999988764 55421 1000 122223333 345 78998888
Q ss_pred CCCCHHHHHHHHHcCCccEEEec
Q 013681 312 SCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-+.+.+++.+++..+ +|.+++=
T Consensus 251 GI~~~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 251 GIDSGEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred CCCCHHHHHHHHHcC-ccHheEc
Confidence 888999999999876 7776653
No 63
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.55 E-value=0.091 Score=52.58 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=95.9
Q ss_pred HhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC----------------chHHHHHHHHHHhhCCCcE
Q 013681 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCS 249 (438)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----------------~~~di~~l~aiR~~~~~~~ 249 (438)
++.-.....|+..++...+++++.+.++...+.||..|-+..|-+ ++.-.+.+++||+..+ +.
T Consensus 55 ~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~p 133 (319)
T TIGR00737 55 LLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IP 133 (319)
T ss_pred HhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CC
Confidence 333333456777788888999999999888889999999988731 2233456777777422 22
Q ss_pred EEEeCCCCCCH--HHHHHHHHHhhhCCCCCceEe-------cCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 250 FILDANEGYTS--EEAVEVLGKLNDMGVIPVLFE-------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 250 L~vDAN~~~s~--~~A~~~l~~L~~~~l~~~~iE-------qPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
+.|-...+|+. .+..++++.|++.++. +|- +-.. +.+++..+++++ ..++||.+.=.+.+.+++
T Consensus 134 v~vKir~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~~----~~~ipvi~nGgI~~~~da 207 (319)
T TIGR00737 134 VTVKIRIGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVKQ----AVRIPVIGNGDIFSPEDA 207 (319)
T ss_pred EEEEEEcccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHHH----cCCCcEEEeCCCCCHHHH
Confidence 33333334432 3467888888887753 331 1111 224666666654 678999999999999999
Q ss_pred HHHHHcCCccEEEecC
Q 013681 320 QKVMQENLASVVNIKL 335 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~ 335 (438)
.++++...+|.+++=-
T Consensus 208 ~~~l~~~gad~VmigR 223 (319)
T TIGR00737 208 KAMLETTGCDGVMIGR 223 (319)
T ss_pred HHHHHhhCCCEEEECh
Confidence 9999777799988743
No 64
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.43 E-value=0.15 Score=50.98 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=100.0
Q ss_pred HhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC--C-
Q 013681 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--P- 246 (438)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~--~- 246 (438)
+|.-.....|+..++...+++++.+.++...+.||..|-+..|- +++.-.+.++++++.. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433445677788888999999988888877899999998872 2344456778888742 4
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--------ecCCC--------CCChhhHHHHHHhhcccc-CCeEEE
Q 013681 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--------EQPVH--------RDDWSGLHDVSNFARDTY-GISVVA 309 (438)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--------EqPl~--------~~d~~~~a~L~~~~r~~~-~iPIa~ 309 (438)
.+++|+-.+..=+.++++++++.+++.++. +| .|-.. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 466666222111457788999999887763 44 23332 125666666664 34 799988
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.=.+.+.+|+.+.+. .+|.+++==..+
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigRgal 227 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGREAY 227 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECHHHH
Confidence 889999999999885 588888754333
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.26 E-value=0.15 Score=50.45 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=90.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcC-CcEEEEecC--------C----CchHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLG-FSTLKLNVG--------R----NITADFDVLQAIHAVHPHCSFILDANEGYTS 260 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~G-f~~iKlKvG--------~----d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~ 260 (438)
.|+..++...++++..+.++++.+.| |..|-+.++ . +.+.-.+.+++||+.. ++.+.|--+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 46667777778999998899988888 999999653 1 3445566788888854 5556665553 34
Q ss_pred HHHHHHHHHhhhCCCCCceEe---------------cCC-------------CCCChhhHHHHHHhhccccCCeEEEcCC
Q 013681 261 EEAVEVLGKLNDMGVIPVLFE---------------QPV-------------HRDDWSGLHDVSNFARDTYGISVVADES 312 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iE---------------qPl-------------~~~d~~~~a~L~~~~r~~~~iPIa~dEs 312 (438)
++..++++.+++.++. .|. +|. .+-.++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778888888876653 221 111 111233334444 357899999999
Q ss_pred CCCHHHHHHHHHcCCccEEEecC
Q 013681 313 CRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 313 l~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+.+.+++.+++..+ +|.|++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999887 68888643
No 66
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.19 E-value=0.22 Score=47.49 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=94.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC-C-CcEEEEeC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-P-HCSFILDA 254 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~-~-~~~L~vDA 254 (438)
+.|+..++...+++++.+.++.. +.++..|-+..|- |++.-.+.++++++.. | .+++|+.
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~- 144 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN- 144 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-
Confidence 34666788888999998877775 6789999988762 4455556677777542 2 3455553
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC---ChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~---d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
|+..+.+++++++++.+....-|.+=.+.. +|+..+++++ .. ++||.+--.+.+.+|+.++++. .+|.
T Consensus 145 ---~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~-GAd~ 216 (231)
T TIGR00736 145 ---CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKA-GADF 216 (231)
T ss_pred ---CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHh-CCCe
Confidence 455667899999998886433566544332 5777777765 45 4999999999999999999985 5888
Q ss_pred EEec
Q 013681 331 VNIK 334 (438)
Q Consensus 331 i~lk 334 (438)
|++=
T Consensus 217 Vmvg 220 (231)
T TIGR00736 217 VSVA 220 (231)
T ss_pred EEEc
Confidence 8763
No 67
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.10 E-value=0.12 Score=52.72 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEe-------C
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILD-------A 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vD-------A 254 (438)
.+.|+..++.||..+-|..+. +++ --++.|++||+ ++++ +-+|+- .
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 345677788999999999762 111 13578899998 4665 445552 2
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCceEecCCCC--CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 255 NEGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 255 N~~~s~~~-A~~~l~~L~~~~l~~~~iEqPl~~--~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.++++.+| ++++++.|++.++. +|+=-... ....-...+++.+|+.+++||...-. .+++..+++++.+.+|.|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCEE
Confidence 45689888 89999999987763 56522210 00011123334444568889877655 489999999999999986
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
-+
T Consensus 319 ~~ 320 (362)
T PRK10605 319 AF 320 (362)
T ss_pred EE
Confidence 65
No 68
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.02 E-value=0.19 Score=51.30 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeC----C-
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDA----N- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~--~~L~vDA----N- 255 (438)
.+.++..++.||..+.|+-.. +++ --++.|++||+ .+++ +-+|+=+ +
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Confidence 455677788999999999752 111 24678899998 4666 4555433 2
Q ss_pred CCCCHHHHHHHHHHhhhCC-CCC----ceEecCCCCCChh--hH-HHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 256 EGYTSEEAVEVLGKLNDMG-VIP----VLFEQPVHRDDWS--GL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~-l~~----~~iEqPl~~~d~~--~~-a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
++|+.++++++++.|++.+ +.. .|-..+...-... ++ ..++..++....+|+.+--.+.+++..+++++.+.
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~ 311 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGR 311 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 3789999999999999988 331 1222221111111 11 12232233467799988888999999999999988
Q ss_pred ccEEEe
Q 013681 328 ASVVNI 333 (438)
Q Consensus 328 ~d~i~l 333 (438)
+|.|-+
T Consensus 312 aDlVa~ 317 (363)
T COG1902 312 ADLVAM 317 (363)
T ss_pred CCEEEe
Confidence 887654
No 69
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.95 E-value=0.15 Score=57.24 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.9
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cc----hHHHHHHHHHHhh-CCC--cEEEEeC----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NI----TADFDVLQAIHAV-HPH--CSFILDA----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~----~~di~~l~aiR~~-~~~--~~L~vDA----N~ 256 (438)
.+.++..++.||..|-|..|. ++ .--++.+++||+. +++ +.+++-+ ++
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 445667778999999999871 12 2235788999995 666 3334443 46
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEec--CCC-----CCChhhH-HHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-----RDDWSGL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-----~~d~~~~-a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+|+.++++++++.|++.++. +|+= +-. ......+ ..+++.+|+..++||..-=.+.++++.+++++.+.+
T Consensus 634 g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRA 711 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCc
Confidence 89999999999999988764 5541 100 0000011 223334445688999888889999999999999999
Q ss_pred cEEEe
Q 013681 329 SVVNI 333 (438)
Q Consensus 329 d~i~l 333 (438)
|.|.+
T Consensus 712 D~v~~ 716 (765)
T PRK08255 712 DLCAL 716 (765)
T ss_pred ceeeE
Confidence 98776
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.86 E-value=0.19 Score=48.60 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=104.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC--------------
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-------------- 257 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~-------------- 257 (438)
+|+-...++.+.+++. ++...|... +=+|...-++.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~~----~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVD----KLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHHH----HHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 5665666777887764 445667544 5667666677888888888764 58899997533
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 258 Y---TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
| +..+..++++.+++.++. ..+=..+.. -|++.++++++ .+++||.+-=-+.+.+++.+++..+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~-~iivt~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAG-EILLTSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCC-EEEEeCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 234567888888888764 111112222 24666677764 578999888888999999999998889
Q ss_pred cEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 329 d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.+.+--... |-....++.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 9987755444 5223567778888888864
No 71
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.76 E-value=0.27 Score=50.18 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=78.1
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCCcE--EEEeC------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHCS--FILDA------ 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~~~--L~vDA------ 254 (438)
.+.++...+.||..|-|+.+. +++ --++.+++||+ ++++.. +|+-+
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~ 226 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDY 226 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccccc
Confidence 455667778999999999753 121 23578899999 577743 34432
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------cCCCCC-ChhhHHHHHHhhccccCCeEEEcCCC-----------
Q 013681 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHRD-DWSGLHDVSNFARDTYGISVVADESC----------- 313 (438)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~~-d~~~~a~L~~~~r~~~~iPIa~dEsl----------- 313 (438)
.++.++++++++++.|++.++. +|+ +|...+ ++. +++.+++..++||..-=.+
T Consensus 227 ~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~----~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 227 TARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELN----LAGWTKKLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchh----HHHHHHHHcCCCEEEECCcccccccccccc
Confidence 1257899999999999887753 453 232111 222 2222334678898776555
Q ss_pred -------CCHHHHHHHHHcCCccEEEe
Q 013681 314 -------RSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 314 -------~~~~d~~~ll~~~a~d~i~l 333 (438)
.++++.+++++.+.+|.|.+
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehh
Confidence 58889999999888888654
No 72
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.66 E-value=0.41 Score=47.19 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=89.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC------------CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~ 261 (438)
.|+..++...++++..+.++.+.+.||..|-+.++- +++.-.+.++++|+.. ++.+.+--+ .+.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCch
Confidence 456667766788888888888888899999997751 3344556788888853 344444333 2334
Q ss_pred HHHHHHHHhhhCCCC-CceE----------e--cCCC-------------CCChhhHHHHHHhhccccCCeEEEcCCCCC
Q 013681 262 EAVEVLGKLNDMGVI-PVLF----------E--QPVH-------------RDDWSGLHDVSNFARDTYGISVVADESCRS 315 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~-~~~i----------E--qPl~-------------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~ 315 (438)
+..++++.+.+.++. +..+ + .|.. +-.++..++++ +.+++||...=.+.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~~ 242 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIAS 242 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCCC
Confidence 677778877776642 0011 1 1211 11123334444 357899999989999
Q ss_pred HHHHHHHHHcCCccEEEecCCcc
Q 013681 316 LNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 316 ~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+++.++++.+ +|.|++=-..+
T Consensus 243 ~~da~~~l~~G-Ad~V~igra~l 264 (296)
T cd04740 243 GEDALEFLMAG-ASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHHcC-CCEEEEchhhh
Confidence 99999999987 69988755443
No 73
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.58 E-value=0.29 Score=49.42 Aligned_cols=118 Identities=13% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeCC------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDAN------ 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDAN------ 255 (438)
.+.++...+.||..+.|..+. +++ --++.+++||+ ++++ +.+|+-+.
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~ 234 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDM 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCC
Confidence 455677778999999999763 111 23567899998 4653 55555443
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEec--CC-----CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-----HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl-----~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..--.+. +++..++++.+.
T Consensus 235 ~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g~ 307 (338)
T cd02933 235 GDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADGK 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcCC
Confidence 245889999999999987753 4542 11 112233333443 46789988777765 888999999998
Q ss_pred ccEEEe
Q 013681 328 ASVVNI 333 (438)
Q Consensus 328 ~d~i~l 333 (438)
+|.|.+
T Consensus 308 ~D~V~~ 313 (338)
T cd02933 308 ADLVAF 313 (338)
T ss_pred CCEEEe
Confidence 998765
No 74
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.55 E-value=0.24 Score=49.98 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHhhC--C-CcEEEEe--CCCCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVH--P-HCSFILD--ANEGY 258 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~~~--~-~~~L~vD--AN~~~ 258 (438)
.+.|+...+.||..+.|..|. +++. -.+.+++||+.- + .+++..+ .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 345667778999999999872 1222 245778888843 2 2344432 35688
Q ss_pred CHHHHHHHHHHhhhCCCCCceEec------CCCCCChhh-HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQ------PVHRDDWSG-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEq------Pl~~~d~~~-~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
+.++++++++.|++.++. ||+= |.+.....+ ...+++.+++..++||..-=.+.++++.+++++.+.+|.|
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 999999999999987753 5531 101011111 1223333445688998877788899999999999888885
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
.+
T Consensus 303 ~~ 304 (337)
T PRK13523 303 FI 304 (337)
T ss_pred Hh
Confidence 43
No 75
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.32 E-value=0.76 Score=43.92 Aligned_cols=129 Identities=11% Similarity=0.183 Sum_probs=86.0
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEGY 258 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~ 258 (438)
|+..++...+++++.+.++...+ +...|-+..|- +++.-.+.++++|+. ++.+.|=-...|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 66677777899999887777644 55888887771 244446677888874 344444444457
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCC--CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPV--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl--~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+ ++..++++.+++.++...-+.+-. ..-||+..+++ +.++||.+-=.+.+.+++.++++.+ +|.|++-
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiG 220 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVA 220 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEc
Confidence 6 677888899988775311122211 12234443333 1579999999999999999999865 9998874
No 76
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.31 E-value=0.57 Score=46.34 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=96.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhc--CCcEEEEecCC------------CchHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKL--GFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~--Gf~~iKlKvG~------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s 259 (438)
.|+..++...+++++.+.++.+.+. ++..|-+.+|- +++.-.+.++++|+.. ++.+.|.-+. +
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~ 167 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--N 167 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--C
Confidence 4556677667899998888887654 38999998872 3344466778888753 3455555553 4
Q ss_pred HHHHHHHHHHhhhCCCCCceEe---------------cCCCCC---------C----hhhHHHHHHhhccccCCeEEEcC
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFE---------------QPVHRD---------D----WSGLHDVSNFARDTYGISVVADE 311 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iE---------------qPl~~~---------d----~~~~a~L~~~~r~~~~iPIa~dE 311 (438)
.++..++++.+++.++. .|. +|.... . ++...++ ++..++||.+.=
T Consensus 168 ~~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~G 241 (300)
T TIGR01037 168 VTDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVG 241 (300)
T ss_pred hhhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEEC
Confidence 46778888889887754 442 111000 0 1222233 346789999988
Q ss_pred CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHH-HHHHHHHHHHcCC
Q 013681 312 SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLG-TLQIIKATRKSGL 355 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~-~~~~~~~A~~~gi 355 (438)
.+.+.+++.+++..+ +|.+++=-..+ | +.. ..++.++.+++|.
T Consensus 242 GI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 242 GITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred CCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 999999999999876 88888654333 3 222 2334555556654
No 77
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.08 E-value=0.25 Score=47.58 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEe-------cC-------CCchHHHHHHHHHHhh--C-CCcEE--EEeCCCC--CC
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLN-------VG-------RNITADFDVLQAIHAV--H-PHCSF--ILDANEG--YT 259 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlK-------vG-------~d~~~di~~l~aiR~~--~-~~~~L--~vDAN~~--~s 259 (438)
+.++++.+.+.++++.+.|...+|+. .| .+.++-+++++++++. . +++.| |.|+-.. .+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 34577788888999999999999992 22 1567778899999884 3 45444 6787554 78
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
.++|++.+++..+.|-...|+|-|. +.+.++++++ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999876656999887 5678888886 577888764
No 78
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.05 E-value=0.56 Score=48.01 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cc----hHHHHHHHHHHh-hCCC--cEEEEeCC-----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NI----TADFDVLQAIHA-VHPH--CSFILDAN----- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~----~~di~~l~aiR~-~~~~--~~L~vDAN----- 255 (438)
.+.|+...+.||..+-|..+. ++ +--++.+++||+ ++++ +.+|+-+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGP 232 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCC
Confidence 455677788999999999863 11 123578899998 4666 45555432
Q ss_pred -CCCCHHHHHHHHHHhhhCCCC-----CceEecC-CCCCC-hhh-HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVI-----PVLFEQP-VHRDD-WSG-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP-l~~~d-~~~-~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
++++.++++++++.|++. +. .-+.+.. ..... .++ ...+++.+|+.+++||..-=.+.++++..++++.+
T Consensus 233 ~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g 311 (370)
T cd02929 233 GGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSG 311 (370)
T ss_pred CCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 237899999999999873 11 0011111 10000 011 12233333456899998877889999999999999
Q ss_pred CccEEEec
Q 013681 327 LASVVNIK 334 (438)
Q Consensus 327 a~d~i~lk 334 (438)
.+|.|.+=
T Consensus 312 ~~D~V~~g 319 (370)
T cd02929 312 ILDLIGAA 319 (370)
T ss_pred CCCeeeec
Confidence 99987653
No 79
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.33 E-value=0.85 Score=43.95 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC--CCcEEEEeCCC------------CCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE------------GYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~--~~~~L~vDAN~------------~~s 259 (438)
+|+....++.+.+++.+ +.+.|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~~~----~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDARR----LLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHHHH----HHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 56666667778777644 44567554 466765556778888888865 35778889653 121
Q ss_pred ---HHHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 260 ---SEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 260 ---~~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
.....++++.+.+.++. ..+=.++. -.|++.++++++ .+++||...=-+.+.+|+.++++...++.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 12345677777776653 22222322 235777777775 57899887778889999999987655777
Q ss_pred EEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 331 VNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 331 i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.+--... |-....++.+.+++.|+.+
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 77654444 5333456677778888865
No 80
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.13 E-value=0.78 Score=46.63 Aligned_cols=117 Identities=15% Similarity=0.282 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hC----CCcE--EEEeC--
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VH----PHCS--FILDA-- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~----~~~~--L~vDA-- 254 (438)
.+.|+...+.||..|-|..+. +++. -.+.+++||+ ++ +++. +|+..
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 455677778999999998741 1222 3467899998 46 5644 44433
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------cCCC---CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~---~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
.++.+.++++++++.|++.++. ||+ .+.. ...++..+.+++.. ..++||..-=.+.++++..++
T Consensus 227 ~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 227 PEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHHH
Confidence 4578899999999999998864 665 1111 11222333343311 137888877778889999898
Q ss_pred HHcCCccE
Q 013681 323 MQENLASV 330 (438)
Q Consensus 323 l~~~a~d~ 330 (438)
++.+ +|.
T Consensus 303 l~~g-aD~ 309 (353)
T cd04735 303 LETG-ADL 309 (353)
T ss_pred HHcC-CCh
Confidence 8873 665
No 81
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.70 E-value=0.41 Score=48.41 Aligned_cols=125 Identities=21% Similarity=0.365 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeCCC----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDANE---- 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~--~~L~vDAN~---- 256 (438)
.+.|+..++.||..+-|..+. +++ --++.+++||+ ++++ +-+|+-+..
T Consensus 152 ~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~ 231 (341)
T PF00724_consen 152 AQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEG 231 (341)
T ss_dssp HHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTT
T ss_pred HHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCC
Confidence 345677788999999999863 111 13667899998 5776 467777754
Q ss_pred CCCHHHHHHHHHHhhhCCCCC------ce--EecCCC--CCChhh--HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 257 GYTSEEAVEVLGKLNDMGVIP------VL--FEQPVH--RDDWSG--LHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~------~~--iEqPl~--~~d~~~--~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+++.++..++++.+++.++.. .+ ...|.. +.+... ...+++.+|+.+.+||.+--.+.+++...++++
T Consensus 232 g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~ 311 (341)
T PF00724_consen 232 GITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALE 311 (341)
T ss_dssp SHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHh
Confidence 456788866666666543210 01 122332 222111 113334444568899998888888888899999
Q ss_pred cCCccEEEe
Q 013681 325 ENLASVVNI 333 (438)
Q Consensus 325 ~~a~d~i~l 333 (438)
.+.+|.|-+
T Consensus 312 ~g~~DlV~~ 320 (341)
T PF00724_consen 312 EGKADLVAM 320 (341)
T ss_dssp TTSTSEEEE
T ss_pred cCCceEeec
Confidence 999999765
No 82
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.06 E-value=1.6 Score=40.84 Aligned_cols=94 Identities=10% Similarity=0.161 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.+++++.++.|.+.+++ .+|=++...+. +..+++++ +. .+.|..+ ++.+.++++++++.+ .+++ +-|.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~----~~~~~~vGAG-TVl~~~~a~~a~~aG-A~Fi-vsP~ 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRK----EVPDALIGAG-TVLNPEQLRQAVDAG-AQFI-VSPG 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcC-CCEE-ECCC
Confidence 789999999999999986 89999976553 44666664 33 3555555 888999999999986 6665 3443
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
. ..++++.|+++|++++++.+.-|-
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptE 113 (204)
T TIGR01182 89 L-----TPELAKHAQDHGIPIIPGVATPSE 113 (204)
T ss_pred C-----CHHHHHHHHHcCCcEECCCCCHHH
Confidence 3 358899999999999999986554
No 83
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.84 E-value=3 Score=39.76 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=93.4
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCC-----------CCC--
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDAN-----------EGY-- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN-----------~~~-- 258 (438)
+|+....++.+.+++.+ +.+.|...+ -+|..+-++.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~~~----~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDARR----LLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHHHH----HHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 56667777778877643 445676654 556555556677777766543 488889975 123
Q ss_pred -CHHHHHHHHHHhhhCCCCCceEe------c-CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 259 -TSEEAVEVLGKLNDMGVIPVLFE------Q-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~iE------q-Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+..++.++++.+.+.++. +|. + .....+++..+++++ .+++||.+.=.+.+++++.++++...+|.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d--~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAG--EILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred ecCCCHHHHHHHHHHCCCC--EEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 245567888888877764 221 1 122235777777765 57899988888889999999998766888
Q ss_pred EEecCCcc-h-HHHHHHHHHHHHH
Q 013681 331 VNIKLAKF-G-VLGTLQIIKATRK 352 (438)
Q Consensus 331 i~lk~~~~-G-i~~~~~~~~~A~~ 352 (438)
+.+--... | + ...++.+.+++
T Consensus 220 v~vg~al~~~~~-~~~~~~~~~~~ 242 (243)
T cd04731 220 ALAASIFHFGEY-TIAELKEYLAE 242 (243)
T ss_pred EEEeHHHHcCCC-CHHHHHHHHhh
Confidence 77744433 5 3 23444444443
No 84
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.46 E-value=13 Score=39.56 Aligned_cols=177 Identities=10% Similarity=0.118 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeCCCC----CC--HHHH-HHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANEG----YT--SEEA-VEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDAN~~----~s--~~~A-~~~l~ 268 (438)
+.+++...++.+-+.||..+-+--|..+ +++.++|+++|+..++..|..=..|. |. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788999999999999999999766533 46899999999988887776444322 33 3444 45777
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC---eEEE-cCCCCCHHHH----HHHHHcCCccEEEecCCcch-
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI---SVVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG- 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i---PIa~-dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~G- 339 (438)
...+.++.+..|=.|+. |.+.+....+.+++.... -|.- .-...+.+.+ +++.+.+ +|.|.+|=+- |
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 77777877667888886 455555444333322221 2211 1234566654 4555554 7888887655 5
Q ss_pred --HHHHHHHHHHHHHc---CCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 340 --VLGTLQIIKATRKS---GLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 340 --i~~~~~~~~~A~~~---gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
...+.+++...++. ++++.+|+-..+|++++- .+++.-.....+|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An--~laAieAGad~vD 230 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS--LMKAIEAGVDVVD 230 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH--HHHHHHcCCCEEE
Confidence 44566666665554 699999987555555443 3333322344554
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.37 E-value=5.6 Score=38.14 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI------TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~------~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
+.++..+.++.+.+.|+..|-+-.+... +.+.+.++.+++.+++.++.+.+... .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 7788888899998999998888777655 77888999999988777776666443 3345555555543
Q ss_pred ceEecCCCCC--------------ChhhHHHHHHhhccccCCeEEEcC-CC----CCHHHH----HHHHHcCCccEEEec
Q 013681 278 VLFEQPVHRD--------------DWSGLHDVSNFARDTYGISVVADE-SC----RSLNDV----QKVMQENLASVVNIK 334 (438)
Q Consensus 278 ~~iEqPl~~~--------------d~~~~a~L~~~~r~~~~iPIa~dE-sl----~~~~d~----~~ll~~~a~d~i~lk 334 (438)
+|-=++... +++...+..+.++ +.++.+...= .. .+++.+ +.+.+ ..++.|.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE-AGADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 333333322 2333322222222 3466665442 22 333333 33444 458888876
Q ss_pred CCcch-H--HHHHHHHHHHHH-cC-CeEEEccCCchhHH
Q 013681 335 LAKFG-V--LGTLQIIKATRK-SG-LHLMIDGMIETRLA 368 (438)
Q Consensus 335 ~~~~G-i--~~~~~~~~~A~~-~g-i~~~~~s~~es~ig 368 (438)
.+. | + ....+++...++ .+ +++-+|+-..-+++
T Consensus 167 Dt~-G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla 204 (265)
T cd03174 167 DTV-GLATPEEVAELVKALREALPDVPLGLHTHNTLGLA 204 (265)
T ss_pred hhc-CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChH
Confidence 653 5 3 345566555444 34 77777775444443
No 86
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.23 E-value=2.9 Score=40.06 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=87.9
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCC------CCCC--HHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDAN------EGYT--SEEAV 264 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN------~~~s--~~~A~ 264 (438)
+|+....++.+.+++ +++++.|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|.. .+|. ..+..
T Consensus 76 ~pv~vgGGirs~edv----~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~ 149 (241)
T PRK14024 76 VKVELSGGIRDDESL----EAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW 149 (241)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence 444444566677664 456677876 5566765556777777776644 4566777773 2453 33467
Q ss_pred HHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc--CCccEEEecCC
Q 013681 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLA 336 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~--~a~d~i~lk~~ 336 (438)
++++.+++.++. ..+ ++-....||+.++++++ .+++||...=.+.+.+|+.++.+. ..++.+.+--.
T Consensus 150 ~~~~~l~~~G~~-~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 150 EVLERLDSAGCS-RYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHhcCCC-EEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 788888887754 122 55555557888888885 578999888888999999888642 35777766443
Q ss_pred c
Q 013681 337 K 337 (438)
Q Consensus 337 ~ 337 (438)
.
T Consensus 225 ~ 225 (241)
T PRK14024 225 L 225 (241)
T ss_pred H
Confidence 3
No 87
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.13 E-value=2.9 Score=40.49 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=83.3
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC-----------C--
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-----------Y-- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~-----------~-- 258 (438)
+|+....++.+.+++ +++.+.|+..+ -+|...-++.+.++.+.+.++ .+.+.+|+..+ |
T Consensus 75 ~pv~~gGGi~s~~d~----~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 75 MPLCYGGGIKTLEQA----KKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred CCEEECCCCCCHHHH----HHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 344344455666654 44556787654 456544456677887777553 47888997543 2
Q ss_pred -CHHHHHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 259 -TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
+.....+++++++++++. ..+ ++...--|++.++++++ .+++||.+.=-+.+.+|+.++++...++.+
T Consensus 149 ~~~~~~~e~~~~~~~~g~~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAG-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred cCCCCHHHHHHHHHHcCCC-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 122346677777776653 222 34444447888888875 588999888889999999999854557766
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
.+
T Consensus 224 iv 225 (258)
T PRK01033 224 AA 225 (258)
T ss_pred EE
Confidence 54
No 88
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.97 E-value=4.4 Score=38.22 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=82.5
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC-CcEEEEeCC------CCC---CHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-HCSFILDAN------EGY---TSEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~-~~~L~vDAN------~~~---s~~~A 263 (438)
+|+....++.+.+++. ++.+.|.. ++=+|...-++.+.++.+.+.++ .+.+.+|.. .+| +....
T Consensus 75 ~pv~~~GGI~~~ed~~----~~~~~Ga~--~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~ 148 (233)
T PRK00748 75 IPVQVGGGIRSLETVE----ALLDAGVS--RVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA 148 (233)
T ss_pred CCEEEcCCcCCHHHHH----HHHHcCCC--EEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence 4555555667777653 44566755 34567644455556666666544 477888873 234 12233
Q ss_pred HHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 264 VEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.++++.+++.+.. ..+ ++...-.|++.++++++ .+++||...=-+.+.+|++++++.+.++.+.+=
T Consensus 149 ~e~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 4566666665543 122 23333346788888875 578999888889999999999998778877653
No 89
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.70 E-value=8.5 Score=36.27 Aligned_cols=142 Identities=13% Similarity=0.212 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
-..++++..+.++.+.+.|++++.+-... ..-.+.++++++.+++ -++.|=|..-.+++++.+..+ .+. .|
T Consensus 20 r~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~----aGA--~F 91 (213)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL----AGA--QF 91 (213)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH----cCC--CE
Confidence 34588999999999999999999999864 3456788888887754 368899999999998766554 343 26
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHc-CCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKS-GLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~-gi~~ 357 (438)
|=-|.-. .++.+.|. +.++|+.-| +.++.++.+.++.+ +|++.+=|.. .|+.....+ ..-. ++++
T Consensus 92 ivsP~~~---~~v~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik~l---~~~~p~ip~ 158 (213)
T PRK06552 92 IVSPSFN---RETAKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIKAI---KGPLPQVNV 158 (213)
T ss_pred EECCCCC---HHHHHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHHHH---hhhCCCCEE
Confidence 6667653 34444554 578998886 66889999888764 8999996644 364443333 2333 4888
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
++.+-+
T Consensus 159 ~atGGI 164 (213)
T PRK06552 159 MVTGGV 164 (213)
T ss_pred EEECCC
Confidence 877644
No 90
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.58 E-value=4.5 Score=38.28 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=82.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC-C-cEEEEeCCCC------------C-
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-H-CSFILDANEG------------Y- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~-~-~~L~vDAN~~------------~- 258 (438)
+|+....+..+.+++.+ +.+.|+..+ -+|...-++.+.++.+.+.++ + +.+.+|+... |
T Consensus 75 ~pv~~~ggi~~~~d~~~----~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~ 148 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKK----LLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR 148 (232)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc
Confidence 45445555667766543 446687654 556544566677888777643 3 6678886542 2
Q ss_pred --CHHHHHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 259 --TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 259 --s~~~A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+..+++++++.+++.++. ..+ +.-....+++.++++++ .+++||.+.=-+.+.+++.+++....++.
T Consensus 149 ~~~~~~~~~~~~~~~~~G~d-~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadg 223 (232)
T TIGR03572 149 RATGRDPVEWAREAEQLGAG-EILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASA 223 (232)
T ss_pred ccCCCCHHHHHHHHHHcCCC-EEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCE
Confidence 234567888888877754 111 11122235777777775 57899988888889999998565556777
Q ss_pred EEe
Q 013681 331 VNI 333 (438)
Q Consensus 331 i~l 333 (438)
+.+
T Consensus 224 V~v 226 (232)
T TIGR03572 224 VAA 226 (232)
T ss_pred EEE
Confidence 665
No 91
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.55 E-value=9.7 Score=35.63 Aligned_cols=143 Identities=14% Similarity=0.213 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
-..++++..+.++.+.+.|++++.+..-. ....+.++.+++.+++ .+.|=|..-.+.+++...++.=.+ ++
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~------fi 87 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGR------LI 87 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCC------EE
Confidence 34588899999999999999999998754 2345588888887764 366777777888876554443233 44
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHcCCeEEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
=-|.. |. ...+.+. ..++++..+ +.++.++.+..+.+ +||+.+=|+. +|+....++..... ..++++.
T Consensus 88 vsp~~--~~-~v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvva 156 (206)
T PRK09140 88 VTPNT--DP-EVIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIKALRAVLP-PDVPVFA 156 (206)
T ss_pred ECCCC--CH-HHHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEE
Confidence 44543 32 3333333 468888887 89999998888765 7999874433 46444444332221 2588887
Q ss_pred ccCC
Q 013681 360 DGMI 363 (438)
Q Consensus 360 ~s~~ 363 (438)
.+-+
T Consensus 157 iGGI 160 (206)
T PRK09140 157 VGGV 160 (206)
T ss_pred ECCC
Confidence 6533
No 92
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.18 E-value=8.5 Score=38.10 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=80.9
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C-------CCchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G-------~d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
++|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++=+++|+++++. .+++-| |-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 45654433 345889998899999999998887732 2 1456667788888874 456544 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..++|+..
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 98766779999999999998876656998765 4778888886 46677744
No 93
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.17 E-value=2.5 Score=39.49 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.+++++.++.|.+-+++ .||=++...+ .+.+++|++ +.+ +-|..+ ++.+.++++++++.+ .++++ -|.
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~----~~~~~~vGAG-TVl~~e~a~~ai~aG-A~Fiv-SP~ 84 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA----EVEEAIVGAG-TILNAKQFEDAAKAG-SRFIV-SPG 84 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HCCCCEEeeE-eCcCHHHHHHHHHcC-CCEEE-CCC
Confidence 789999999999999986 8999997554 344566654 233 444444 888999999999986 56543 343
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
. ..++++.|+++|+.++++.+.-|-+
T Consensus 85 ~-----~~~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 85 T-----TQELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 3 2678999999999999999875543
No 94
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.03 E-value=8.4 Score=38.00 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=80.2
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C-------CCchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G-------~d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|.= | .+.++=+++|+++++. .+++-| |-
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 45655443 445788888889999999998887732 2 1456667889988884 345444 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ +.++|+.
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~---~~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALT---SLEEFRQFAK----AVKVPLL 201 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEE
Confidence 99877789999999999998876656998765 4667788876 4667774
No 95
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.92 E-value=11 Score=37.46 Aligned_cols=151 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C----C---CchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G----R---NITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G----~---d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
.+|+..-+ +.+++..+.+.++++.+.|...|-|.= | . +.++=+++|+++++. .+++-| |.
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 46655443 344555577788999999998887732 2 1 455667788888874 345444 78
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE--cC----CCCCHHHHHHHHHcC
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DE----SCRSLNDVQKVMQEN 326 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~--dE----sl~~~~d~~~ll~~~ 326 (438)
|+......++|++.+++..+.|-...|+|-|. +.++++++++ ..+.|+.. -+ ...+. .++-+.
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~---~~~ei~~~~~----~~~~P~~~nv~~~~~~p~~s~---~eL~~l- 225 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAML---DVEEMKRVRD----EIDAPLLANMVEGGKTPWLTT---KELESI- 225 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCC---CHHHHHHHHH----hcCCCeeEEEEecCCCCCCCH---HHHHHc-
Confidence 99877889999999999998876656998754 4677888886 35556522 11 12333 333333
Q ss_pred CccEEEecCCcch--HHHHHHHHHHHHHcC
Q 013681 327 LASVVNIKLAKFG--VLGTLQIIKATRKSG 354 (438)
Q Consensus 327 a~d~i~lk~~~~G--i~~~~~~~~~A~~~g 354 (438)
.++.+..-+.... .....+.++.-.+.|
T Consensus 226 G~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 226 GYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 4666666554442 344444444444444
No 96
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.86 E-value=15 Score=36.39 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEecC----------------CCchHHHHHHHHHHhh--CCCcEE--
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVG----------------RNITADFDVLQAIHAV--HPHCSF-- 250 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKvG----------------~d~~~di~~l~aiR~~--~~~~~L-- 250 (438)
++|+..-+ +.+++..+.+-++++.+.|...+-|.=+ .+.++=.++|+++++. .+++-|
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~A 154 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIA 154 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45654433 3345556777889999999988877322 1344557788888874 456544
Q ss_pred EEeCC-CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 251 ILDAN-EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 251 ~vDAN-~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
|-|+- .....++|++.+++..+.|-...|+|-|+. +.++++++++.+ ..++|+..
T Consensus 155 RTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 155 RVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred EeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEE
Confidence 67886 456789999999999988866568877653 467888888632 23467754
No 97
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.48 E-value=14 Score=38.96 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHH-HHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANE----GYT--SEE-AVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~-A~~~l~ 268 (438)
+.++|...++.+-+.||..+-+--|..+ +.+.++|+++|+..|+..|..=..| +|. +++ ...+++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 6788888899998899999999877533 5789999999998776655422222 344 344 345777
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----E-EEcCCCCCHHH----HHHHHHcCCccEEEecCCcch
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLND----VQKVMQENLASVVNIKLAKFG 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----I-a~dEsl~~~~d----~~~ll~~~a~d~i~lk~~~~G 339 (438)
...+.++++..|=+++. |.+.+....+.+++ .+.- | ..+...++.+- ++++.+. .+|.|.+|=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM-GADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 77888887667777775 45555554444433 2221 2 12223333333 2555555 47888887655 5
Q ss_pred ---HHHHHHHHHHHHH-cCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 340 ---VLGTLQIIKATRK-SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 340 ---i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
...+.+++...++ .++++.+|+-..++++.+ ..+++.-.....+|
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~A--n~laAieAGad~vD 236 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQM--TYLAAVEAGADRID 236 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHH--HHHHHHHcCCCEEE
Confidence 3445555555544 468888888655555444 33433322334444
No 98
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=90.46 E-value=2.2 Score=42.50 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+.+.++++ ++++|+.+|=... ..-+....+. +++-+.+.|..+| -....++++.|+++|+++-++-.++|
T Consensus 64 ~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 64 EALKEIKQ----RLNVPLVADIHFD-YRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc
Confidence 34445543 7899999997765 4444555554 4899999999999 67799999999999999998865543
No 99
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.25 E-value=4 Score=43.90 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=99.7
Q ss_pred eeeeeeeCCCCHHH-------HHHHHHHHhhcCCcEEEEecCC----Cc--------hHHHHHHHHHHhhC-CC-cEEEE
Q 013681 194 LSTAITIPAVSPAE-------ASELASKYCKLGFSTLKLNVGR----NI--------TADFDVLQAIHAVH-PH-CSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~iKlKvG~----d~--------~~di~~l~aiR~~~-~~-~~L~v 252 (438)
+|+....++.+.++ ..+.++++++.|...+- +|. ++ ..+-+.++.+-+.+ .+ +.+.|
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~--i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsi 392 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKIS--IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSI 392 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEE--EChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEE
Confidence 56555555556544 25778888999966444 443 21 12457888888865 55 88999
Q ss_pred eCCCCC-------------------------------------CHHHHHHHHHHhhhCCCCCceEecCCCCC------Ch
Q 013681 253 DANEGY-------------------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRD------DW 289 (438)
Q Consensus 253 DAN~~~-------------------------------------s~~~A~~~l~~L~~~~l~~~~iEqPl~~~------d~ 289 (438)
|+...+ +--+++++++++++++.. +.+=-=+..| |+
T Consensus 393 D~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~ 471 (538)
T PLN02617 393 DPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDI 471 (538)
T ss_pred ecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCH
Confidence 986432 123578899999998864 3444444433 56
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.++.++. .+++||.+-=-.-+++|+.+++....++.+..--..+ +-....++-+..++.|+++
T Consensus 472 ~l~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 472 ELVKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 77777775 6899998877888999999999865555544332222 3222344445556677764
No 100
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.22 E-value=7.2 Score=37.03 Aligned_cols=131 Identities=17% Similarity=0.304 Sum_probs=81.1
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-C-CcEEEEeCC------CCCCHH---H
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDAN------EGYTSE---E 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-~~~L~vDAN------~~~s~~---~ 262 (438)
+|+....++.+.+++ +.+.+.|.. ++-+|.....+.+.++.+++.+ + .+-+.+|+. .+|..+ +
T Consensus 77 ~~l~v~GGi~~~~~~----~~~~~~Ga~--~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~ 150 (241)
T PRK13585 77 VPVQLGGGIRSAEDA----ASLLDLGVD--RVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYT 150 (241)
T ss_pred CcEEEcCCcCCHHHH----HHHHHcCCC--EEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCC
Confidence 343344456677665 344567876 4566764455667888888864 3 466788875 344321 3
Q ss_pred HHHHHHHhhhCCCCCce---E--ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 263 AVEVLGKLNDMGVIPVL---F--EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~---i--EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
..++++.+.+.++.... + +.....-+++.++++++ .+++||...=-+.+.+++.++.+.+ ++.+.+--
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vgs 223 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVVGS 223 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEEH
Confidence 35566666666643111 2 22223346777888875 5789998888889999999877654 66666543
No 101
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=90.22 E-value=7.4 Score=37.25 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=89.9
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCCC------CCCHH---HHH
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYTSE---EAV 264 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN~------~~s~~---~A~ 264 (438)
|+-...++.|.+. ++++++.|...+-+ |.-.-+|-++++.+.+.+ ..+.+.+|++. +|... ++.
T Consensus 77 ~vQvGGGIRs~~~----v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~ 150 (241)
T COG0106 77 PVQVGGGIRSLED----VEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE 150 (241)
T ss_pred CEEeeCCcCCHHH----HHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence 3333445556554 56677889766544 433356778888888865 56889999986 46422 456
Q ss_pred HHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-CCccEEEecCCc
Q 013681 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAK 337 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-~a~d~i~lk~~~ 337 (438)
++++++++.++. .+| |=-+.--|++.+.+|++ .+.+|+-.-=-+.+.+|++++-+. +...+|.=+.-.
T Consensus 151 ~l~~~~~~~g~~-~ii~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLA-HILYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCC-eEEEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 777888877653 233 34444447889999997 589998777788899999988877 444444445444
Q ss_pred ch
Q 013681 338 FG 339 (438)
Q Consensus 338 ~G 339 (438)
.|
T Consensus 226 ~g 227 (241)
T COG0106 226 EG 227 (241)
T ss_pred cC
Confidence 56
No 102
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.11 E-value=2.4 Score=39.96 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
-++++|++.++.|.+.+++ .||=++...+ .+..++|++. -..+-|..| +..+.++++..++.+ .+++..-
T Consensus 24 ~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aG-A~FivsP-- 94 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAG-AQFIVSP-- 94 (212)
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcC-CCEEECC--
Confidence 3689999999999999986 8999987554 3445555541 223555555 777889999999986 6665433
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
|+.. ++++.|++++++++++.+.-+
T Consensus 95 --~~~~--~vi~~a~~~~i~~iPG~~Tpt 119 (212)
T PRK05718 95 --GLTP--PLLKAAQEGPIPLIPGVSTPS 119 (212)
T ss_pred --CCCH--HHHHHHHHcCCCEeCCCCCHH
Confidence 3333 788899999999999997533
No 103
>PLN02411 12-oxophytodienoate reductase
Probab=90.07 E-value=7.3 Score=40.21 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeC----C--
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDA----N-- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDA----N-- 255 (438)
.+.|+..++.||..+-|+.+. +++ -=++.|++||+ ++++ +-+|+-+ +
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~ 247 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDA 247 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCC
Confidence 455677788999999999752 111 13578899998 4665 4455543 1
Q ss_pred -CCCCHHHHHHHHHHhhhC------CCCCceEecCC------------CCCChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 256 -EGYTSEEAVEVLGKLNDM------GVIPVLFEQPV------------HRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~------~l~~~~iEqPl------------~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
..-+.++++++.+.|+.. ++ .+|+==. .......+..+++.+|+..++||..-=.+ +.
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 248 TDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 122356677777776642 12 2332111 00000012223334445678888776666 56
Q ss_pred HHHHHHHHcCCccEEEe
Q 013681 317 NDVQKVMQENLASVVNI 333 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~l 333 (438)
+...++++.+.+|+|-+
T Consensus 325 ~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 325 ELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 77888998888888654
No 104
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.00 E-value=4.5 Score=38.40 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.++|.+.++.|.+-++. .||=++...+ .+.+++|++..+++.+ +-|..+ ++.+.++++.+++.+ .++++ -|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aG-A~FiV-sP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLG-ANFIV-TPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcC-CCEEE-CCC
Confidence 789999999999999986 8999997543 4556666532222222 434333 889999999999886 66544 333
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
. ..++++.|+++|++++++.+.-|-+
T Consensus 100 ~-----~~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 F-----NPDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 3 2578899999999999999875543
No 105
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=89.95 E-value=6.5 Score=37.07 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=83.3
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-C-CcEEEEeCCC------CC---CHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDANE------GY---TSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-~~~L~vDAN~------~~---s~~~ 262 (438)
+|+-...++.+++++ +++++.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+
T Consensus 74 ~pv~~~GgI~~~e~~----~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~ 147 (234)
T cd04732 74 IPVQVGGGIRSLEDI----ERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS 147 (234)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence 454455556676654 4455678554 456765556777788887754 3 5777788643 12 2334
Q ss_pred HHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
..++++.+++.+.. .++ ++.....+++.++++++ .+++||...--+.+.+++.++++. .++.+.+=
T Consensus 148 ~~~~~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~-Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKEL-GVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHC-CCCEEEEe
Confidence 55677777776543 222 22223346778888875 578999998899999999999886 57776653
No 106
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.89 E-value=4 Score=38.49 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhcccc----CCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTY----GISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~----~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
+.++|++.++.|.+-+++ .+|=+++..+ .+.+++|++ +. .+-|..| ++.+.+++++.++.+ .++++
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aG-A~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAG-AQFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcC-CCEEE-
Confidence 789999999999999986 8999997554 445666764 33 2445444 889999999999986 66554
Q ss_pred cCCcchHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
-|+.. .++++.|+++|++++++.+..+-
T Consensus 94 sP~~~-----~~v~~~~~~~~i~~iPG~~T~~E 121 (213)
T PRK06552 94 SPSFN-----RETAKICNLYQIPYLPGCMTVTE 121 (213)
T ss_pred CCCCC-----HHHHHHHHHcCCCEECCcCCHHH
Confidence 44442 57788999999999999986554
No 107
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.62 E-value=30 Score=37.73 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~l~ 268 (438)
..++|...++.+-+.||..+-+--|.. -+.+.++|+.+|+..|+..|.+=.-| +|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 567888888888889999999988852 26789999999998888777543321 232 45554 4778
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE----EcCCCCCHHHH----HHHHHcCCccEEEecCCcch-
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV----ADESCRSLNDV----QKVMQENLASVVNIKLAKFG- 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa----~dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~G- 339 (438)
...+.|+.+..|=+++. |.+.+..-.+.+++.-..-.+ ..-..++++.+ +++.+.+ +|.|.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G~ 179 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-GL 179 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-cC
Confidence 88888877666666664 344443322222222221111 13346677654 4455544 7888887655 5
Q ss_pred H--HHHHHHHHHHH-HcCCeEEEccCCchhHHHH
Q 013681 340 V--LGTLQIIKATR-KSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 340 i--~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~ 370 (438)
+ ..+.+++...+ +.++++.+|+-...+++.+
T Consensus 180 l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~a 213 (596)
T PRK14042 180 LTPTVTVELYAGLKQATGLPVHLHSHSTSGLASI 213 (596)
T ss_pred CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHH
Confidence 3 34555555444 4589999998765665544
No 108
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.59 E-value=5.1 Score=37.59 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
++++|+...++|-+-++. -||=|++..+. +..+.+++ ..+ +-|.+| ++.+.++++++.+.+ .+ +.+-|+
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~----~~p~~lIGAG-TVL~~~q~~~a~~aG-a~-fiVsP~ 93 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAK----EFPEALIGAG-TVLNPEQARQAIAAG-AQ-FIVSPG 93 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHH----hCcccEEccc-cccCHHHHHHHHHcC-CC-EEECCC
Confidence 689999999999999986 89999987664 55666765 333 444444 788999999999987 44 344454
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
.. .++++.|..+|++++++.+.-|
T Consensus 94 ~~-----~ev~~~a~~~~ip~~PG~~Tpt 117 (211)
T COG0800 94 LN-----PEVAKAANRYGIPYIPGVATPT 117 (211)
T ss_pred CC-----HHHHHHHHhCCCcccCCCCCHH
Confidence 42 6889999999999999998643
No 109
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.03 E-value=20 Score=33.58 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
-..++++..+.++.+.+.|++++.+-... ..-.+.++.+++.+|+ +.|=|..-.+++++.+..+ .+. .||
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA--~Fi 84 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGA--QFI 84 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCC--CEE
Confidence 34588999999999999999999998854 4456678888888885 7788888899998766655 343 367
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHcCCeEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
=-|.- -.+..+.|+ +.++|..-| +.++.++...++.+ ++++-+=|.- .| ..-.+.+..-- -+++++
T Consensus 85 vsP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ 152 (204)
T TIGR01182 85 VSPGL---TPELAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRFC 152 (204)
T ss_pred ECCCC---CHHHHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcEE
Confidence 55654 234455554 578888875 77899999999886 7888888865 45 44443333322 478899
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
+++-.
T Consensus 153 ptGGV 157 (204)
T TIGR01182 153 PTGGI 157 (204)
T ss_pred ecCCC
Confidence 88754
No 110
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=88.82 E-value=4.7 Score=37.51 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+.++|.+.+++|.+-+++ .+|=+++..+. +.++.+++. .-.+-|..+ ++.+.++++++++.+ .+++.- |..
T Consensus 18 ~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aG-A~FivS-P~~ 89 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAG-AQFIVS-PGF 89 (196)
T ss_dssp SGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-SS-
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcC-CCEEEC-CCC
Confidence 578999999999999986 89999986553 444555542 234555544 888999999999987 555433 322
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
..++++.|+++|++++++.+.-|-+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 90 -----DPEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp ------HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred -----CHHHHHHHHHcCCcccCCcCCHHHH
Confidence 3678999999999999999875543
No 111
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.67 E-value=16 Score=36.03 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe--c--------C-------CCchHHHHHHHHHHhh--CCCcEE--EEeCC-CCCCH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLN--V--------G-------RNITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK--v--------G-------~d~~~di~~l~aiR~~--~~~~~L--~vDAN-~~~s~ 260 (438)
.++..+.+.++++.+.|...+-+. + | .+.++=.++++++++. .+++.| |-|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 688899999999999999998881 1 1 1455667778888774 456544 67875 35679
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc-cCCeEEE
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVA 309 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~-~~iPIa~ 309 (438)
++|++.+++..+.|....|+|-+. .+.++++++++.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999886656888422 3467777777643211 1457654
No 112
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.16 E-value=11 Score=35.86 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=84.0
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCCCC------CC---HHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEG------YT---SEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN~~------~s---~~~A 263 (438)
+|+....++.+.+++ +++.+.|...+ =+|.-.-+|.+.++.+.+.+ ..+-+.+|+... |. .-+.
T Consensus 77 ~pi~vGGGIrs~e~v----~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~ 150 (234)
T PRK13587 77 KDIEVGGGIRTKSQI----MDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNL 150 (234)
T ss_pred CeEEEcCCcCCHHHH----HHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCH
Confidence 454444566677664 55667786554 56765567888999998876 468889998433 42 1223
Q ss_pred HHHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.++++.++++++. ..|=-.+.. .|++.+.++++ .+++||-..=-+.+.+|+.++++.+ ++.+.+
T Consensus 151 ~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIPLG-GIIYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred HHHHHHHHHcCCC-EEEEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 5677777776653 333333332 25666777765 5789998888889999999998764 555554
No 113
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.07 E-value=7.2 Score=37.47 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=84.2
Q ss_pred eeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCC------CCCH---HHHHHHHH
Q 013681 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------GYTS---EEAVEVLG 268 (438)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~------~~s~---~~A~~~l~ 268 (438)
...++.+.+++ +++.+.|... +=+|.-.-+|.+.++.+.+.+.++.+.+|+.. +|.. -+..++++
T Consensus 78 vGGGIrs~e~~----~~~l~~Ga~r--vvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~ 151 (241)
T PRK14114 78 IGGGIRSLDYA----EKLRKLGYRR--QIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK 151 (241)
T ss_pred EecCCCCHHHH----HHHHHCCCCE--EEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH
Confidence 34455666654 5567788764 45675444566778888444567899999843 3532 23567788
Q ss_pred HhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-----CCccEEEecCCc
Q 013681 269 KLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-----NLASVVNIKLAK 337 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-----~a~d~i~lk~~~ 337 (438)
+++++++. ..|=--+.. -|++.++++++ .+++||.+.=-+.+.+|+.++.+. +.++.+.+=-+.
T Consensus 152 ~~~~~g~~-~ii~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 152 RLKEYGLE-EIVHTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred HHHhcCCC-EEEEEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 88877753 334333332 36778888875 578999888888999999988875 226665554333
Q ss_pred c-h
Q 013681 338 F-G 339 (438)
Q Consensus 338 ~-G 339 (438)
. |
T Consensus 227 ~~g 229 (241)
T PRK14114 227 LEG 229 (241)
T ss_pred HCC
Confidence 3 5
No 114
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.99 E-value=17 Score=35.94 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=83.9
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC---------------CchHHHHHHHHHHhhC--C-CcEEEEeC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR---------------NITADFDVLQAIHAVH--P-HCSFILDA 254 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~---------------d~~~di~~l~aiR~~~--~-~~~L~vDA 254 (438)
.|+..++... +++++.+.++++.+.|+..|-+.++- +.+.-.+.++++|+.. | -++|+.|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~- 178 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN- 178 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC-
Confidence 4555565554 88998888888766799999998872 1233344567777632 3 3444432
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceE----------------ecCCC-----------------CCChhhHHHHHHhhcc
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLF----------------EQPVH-----------------RDDWSGLHDVSNFARD 301 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~i----------------EqPl~-----------------~~d~~~~a~L~~~~r~ 301 (438)
.++..++++.+.+.+.. .| +.|.. +-.++..+++++
T Consensus 179 -----~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~---- 247 (299)
T cd02940 179 -----ITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR---- 247 (299)
T ss_pred -----chhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH----
Confidence 23556777777776643 22 22321 001444455543
Q ss_pred cc--CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 302 TY--GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 302 ~~--~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.. .+||...=-+.+.+|+.+++..+ ++.+|+=-..+
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~ 285 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVM 285 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeec
Confidence 56 79999999999999999999864 78888765443
No 115
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.92 E-value=16 Score=36.84 Aligned_cols=152 Identities=23% Similarity=0.261 Sum_probs=103.5
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh-C-C-CcEEEEe
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV-H-P-HCSFILD 253 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~-~-~-~~~L~vD 253 (438)
.-|+-..++.+|++.+.+.++-....+ +.|-+..|- +++---+.|+++++. . | .++||+=
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 345557788899999977766554455 777777762 122233456777763 2 3 3455543
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceE-------ecC---CCCCChhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHH
Q 013681 254 ANEGYTSEEAVEVLGKLNDMGVIPVLF-------EQP---VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKV 322 (438)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~i-------EqP---l~~~d~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~l 322 (438)
=+.++.+++++.+++.+.. |+ ||= ..+-||+.++.+.+ ..+ +||.+.-.+.++.|+.++
T Consensus 152 ----~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~ 221 (358)
T KOG2335|consen 152 ----VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERC 221 (358)
T ss_pred ----CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHH
Confidence 3577888899999987753 44 333 45668999999876 455 999999999999999999
Q ss_pred HHcCCccEEEec------CCcc-----hH--H-HHHHHHHHHHHcCC
Q 013681 323 MQENLASVVNIK------LAKF-----GV--L-GTLQIIKATRKSGL 355 (438)
Q Consensus 323 l~~~a~d~i~lk------~~~~-----Gi--~-~~~~~~~~A~~~gi 355 (438)
++.-.+|.|..- |..+ +. . =..++..+|++++-
T Consensus 222 ~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 222 LKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 996667777642 2211 21 1 25788899999883
No 116
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.75 E-value=24 Score=32.97 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+.+.|++++.+-... ..-.+.++.+++.+|+ +.|=|..-.+.+++.+..+ .+. .||=
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~----aGA--~Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAAK----AGS--RFIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHH----cCC--CEEE
Confidence 4588999999999999999999998864 3456678888887875 7788888899998766554 343 2677
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC-cch-HHHHHHHHHHHHHcCCeEEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~~~ 359 (438)
-|.-. .++.+.|+ +.++|..-| +.|+.++...++.+ ++++-+=|. .+| ..-.+.+..-- -++++++
T Consensus 82 SP~~~---~~vi~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l~p 149 (201)
T PRK06015 82 SPGTT---QELLAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCP 149 (201)
T ss_pred CCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcEEe
Confidence 77653 33444454 578998876 67899999999886 688888885 444 44433332222 3789998
Q ss_pred ccCC
Q 013681 360 DGMI 363 (438)
Q Consensus 360 ~s~~ 363 (438)
++-.
T Consensus 150 tGGV 153 (201)
T PRK06015 150 TGGI 153 (201)
T ss_pred cCCC
Confidence 8654
No 117
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.61 E-value=45 Score=36.48 Aligned_cols=164 Identities=15% Similarity=0.230 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A-~~~l 267 (438)
.+.+++.+.+..+.+.||..+-+--|.. -+++.++++.+|+..|+..+..=..+ +|+ +++. ..++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 3678888889999999999999964532 24688999999998888887765443 343 3444 3566
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-----CCCCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-----ESCRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-----Esl~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
++..+.++....|=.|+. |...+....+.+++ .+.-+... ...++++.+ +++.+. .+|.|.++=+.
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad~I~i~Dt~- 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN--DVRNMEVAIKAAKK-AGAHVQGTISYTTSPVHTIEKYVELAKELEEM-GCDSICIKDMA- 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC--hHHHHHHHHHHHHH-cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCCEEEECCcC-
Confidence 777777766445666664 44555544433332 34434322 223444443 455555 47888887665
Q ss_pred h---HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 339 G---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 339 G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
| ...+.+++...+ +.++++.+|+-..++++.+-
T Consensus 178 G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 178 GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMT 214 (592)
T ss_pred CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHH
Confidence 4 445666655544 45888888887666655543
No 118
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=87.35 E-value=9.8 Score=38.20 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=79.5
Q ss_pred eeeeeeeCCCC-------HHHHHHHHHHHhhcCCcEEEEecCC----------CchHHHHHHHHHHhhCC----CcEEEE
Q 013681 194 LSTAITIPAVS-------PAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~~-------~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~~~di~~l~aiR~~~~----~~~L~v 252 (438)
+|+..++...+ .++..+.+++. ..+...|-+.++- +.+.-.+.++++|+... ++.+.|
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~-~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~v 207 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKL-GPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLV 207 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHH-HhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEE
Confidence 45555554433 45565555554 3346788887752 23444567788887432 334443
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEe--c----------CCCCC-------------ChhhHHHHHHhhcccc--CC
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFE--Q----------PVHRD-------------DWSGLHDVSNFARDTY--GI 305 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iE--q----------Pl~~~-------------d~~~~a~L~~~~r~~~--~i 305 (438)
=-...++.++..++++.+++.++. +|. - |.... .++..+++++ .. .+
T Consensus 208 Kl~~~~~~~~~~~ia~~l~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~----~~~~~i 281 (327)
T cd04738 208 KIAPDLSDEELEDIADVALEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYK----LTGGKI 281 (327)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHH----HhCCCC
Confidence 334446777888899999887764 443 1 11110 0233333433 44 68
Q ss_pred eEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 306 SVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 306 PIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
||.+-=-+.+.+|+.+++..+ +|.+++=
T Consensus 282 pIi~~GGI~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcC-CCHHhcc
Confidence 998888889999999998865 7777664
No 119
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=87.11 E-value=5.5 Score=39.89 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+..++-+++|++.+-. .+==-++. ++-+.+.+++ +.+++|+.+|=.+.- .-....++. .+|-+.+.|..+
T Consensus 33 v~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd~-~lAl~a~~~-g~dkiRINPGNi 104 (346)
T TIGR00612 33 IDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFDY-RLAALAMAK-GVAKVRINPGNI 104 (346)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCCc-HHHHHHHHh-ccCeEEECCCCC
Confidence 34445555556555432 22222221 1123334444 378999999976542 223344443 599999999999
Q ss_pred h-HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 339 G-VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
| -....++++.|+++|+++-++...
T Consensus 105 g~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 105 GFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 9 888999999999999999987644
No 120
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=86.97 E-value=9.4 Score=36.97 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEec--------------CCCCCChhhHHHHHHhhccccCCeEE--EcCCCCCHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------Pl~~~d~~~~a~L~~~~r~~~~iPIa--~dEsl~~~~d 318 (438)
|..|+.++.+++++.|.+.|+. .||= |...++++.++.+.+. ..+..++ ..-......+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~ 90 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDD 90 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHH
Confidence 3457899999999999999985 8887 5556677777777542 1234443 2333445788
Q ss_pred HHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 319 ~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
++++++. .++.+.+-....=+....+.++.|++.|+.+.+.-
T Consensus 91 i~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 91 LKMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 48888774333115678889999999999876553
No 121
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.92 E-value=52 Score=35.98 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC--C------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR--N------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~l 267 (438)
.+.+++...++.+-+.||..+-+--|. | -+++.++++.+|+..|+..|..=..| +|. +++++ .++
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 367888889999989999999996553 1 25789999999998888777543453 454 45554 567
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----EEE-cCCCCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----Ia~-dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
+...+.++.+..|=.++. |.+.+....+.+++ .+.- |.. +....+.+.+ +.+.+. .+|.|.++=+.
T Consensus 104 ~~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~Dt~- 178 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN--DPRNLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIKDMA- 178 (593)
T ss_pred HHHHhcCCCEEEEeeeCC--cHHHHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEECCCC-
Confidence 777777766456667765 34444443333332 3432 332 2333444443 444444 47888887665
Q ss_pred h---HHHHHHHHHHH-HHcCCeEEEccCCchhHHHHH
Q 013681 339 G---VLGTLQIIKAT-RKSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 339 G---i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~a 371 (438)
| ...+.+++... ++.++++-+|+-..++++.+.
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 4 34455555444 345889999987666655543
No 122
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.81 E-value=10 Score=36.99 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC------------ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD------------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~------------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
|-.|+.++.+++++.|++.+++ +||==++.. +.+.++++.+..+.++.+-....-......++...
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999986 899876533 14556666542111233333434333456677666
Q ss_pred HHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 323 l~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+. .++.+.+-...--+..++++++.|+++|+.+.++-
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred hcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 554 47876665433238889999999999999987763
No 123
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=86.11 E-value=7 Score=39.45 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+..++-+++|++.+-. .+==-++. ++-+.+.+++ +++++|+.+|=.+ +..-....++. .+|.+.+.|..+
T Consensus 41 v~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIHF-d~~lAl~a~~~-G~~~iRINPGNi 112 (360)
T PRK00366 41 VEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIHF-DYRLALAAAEA-GADALRINPGNI 112 (360)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecCC-CHHHHHHHHHh-CCCEEEECCCCC
Confidence 44445555556555532 22222221 1223344444 3789999999664 34444555554 489999999999
Q ss_pred h-HH-HHHHHHHHHHHcCCeEEEccCC
Q 013681 339 G-VL-GTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 339 G-i~-~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
| +. ...++++.|+++|+++-++...
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 8 44 6899999999999999987654
No 124
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.90 E-value=50 Score=34.80 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeC---C-CCCC--HHHH-HHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDA---N-EGYT--SEEA-VEVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDA---N-~~~s--~~~A-~~~l 267 (438)
-+.+++.+.++.+-+.||..|-+--|..+ +++.++++.+++..++..+..=+ | -+|. ++++ .+++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 36788888899999999999999644322 34788999999987877775322 2 2453 4444 3566
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----E-EEcCCCCCHHHH----HHHHHcCCccEEEecCCc-
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLNDV----QKVMQENLASVVNIKLAK- 337 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----I-a~dEsl~~~~d~----~~ll~~~a~d~i~lk~~~- 337 (438)
++..+.++...-|=.++. |...+....+.+++ .+.- | ..+...++.+.+ +++.+.+ +|.|.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak~-~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G 178 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--DVRNLETAVKATKK-AGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAG 178 (448)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHHH-cCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC
Confidence 776676765344555554 33344443333332 3432 2 122334454443 5555554 7888886554
Q ss_pred ch-HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 338 FG-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 338 ~G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
+. ...+.+++...+ +.++++.+|+-...+++++ ..+++.-....++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~A--N~laAieaGad~vD 227 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEM--TYLKAIEAGADIID 227 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHH--HHHHHHHcCCCEEE
Confidence 22 445566655544 4589999988655555444 33433322344544
No 125
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=85.89 E-value=8.5 Score=36.91 Aligned_cols=136 Identities=9% Similarity=0.038 Sum_probs=92.3
Q ss_pred ceeeeeee--CCCC-HHHHHHHHHHHhhcCCcEEEEecC---------CCchHHHHHHHHHHhh--CCCcE--EEEeCCC
Q 013681 193 SLSTAITI--PAVS-PAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIHAV--HPHCS--FILDANE 256 (438)
Q Consensus 193 ~ip~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~iKlKvG---------~d~~~di~~l~aiR~~--~~~~~--L~vDAN~ 256 (438)
.+|+..-+ +.++ +..+.+-++++.+.|...+-|.=. .+.++=+++|+++++. .+++- -|-|+-.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~ 148 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL 148 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 46655443 3344 999999999999999998887533 1567778899999884 35544 4788854
Q ss_pred --CCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 257 --GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 257 --~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
....++|++.+++..+.|....|+|-+.. .++++++++ ..++|+..-.. .+..++.++-+.+ +..+..-
T Consensus 149 ~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~~ 219 (238)
T PF13714_consen 149 RAEEGLDEAIERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEET
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEEc
Confidence 67789999999999998876568888854 566788886 45788876553 3224556666654 7666665
Q ss_pred CCc
Q 013681 335 LAK 337 (438)
Q Consensus 335 ~~~ 337 (438)
++.
T Consensus 220 ~~~ 222 (238)
T PF13714_consen 220 NSL 222 (238)
T ss_dssp SHH
T ss_pred HHH
Confidence 533
No 126
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=85.87 E-value=34 Score=32.93 Aligned_cols=158 Identities=10% Similarity=0.085 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc-hHHHHHHHHHHhhC--CCcEEEEe--CC----CCCCHHHHHHHHH-HhhhC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI-TADFDVLQAIHAVH--PHCSFILD--AN----EGYTSEEAVEVLG-KLNDM 273 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~-~~di~~l~aiR~~~--~~~~L~vD--AN----~~~s~~~A~~~l~-~L~~~ 273 (438)
+.++..+.++..++.|++.|-.--.-.. ..+...=+++++.. .++.|.-= .. ..++.+...+-++ .|+.+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4567777788888999999753321111 12333335555542 23333211 11 2256665544332 23433
Q ss_pred C---CCCceEecCCCCC-----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc--CCccEEEecCCcchHHHH
Q 013681 274 G---VIPVLFEQPVHRD-----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLAKFGVLGT 343 (438)
Q Consensus 274 ~---l~~~~iEqPl~~~-----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~--~a~d~i~lk~~~~Gi~~~ 343 (438)
+ +.++++-.|-... -|+.+.++.+ .+.==+.|=|.++...+.++++. ..++++|+..+.+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 2 2234566664432 2445555543 23323445577788888888887 789999998877631112
Q ss_pred HHHHHHHHHcCCeEEEccCCchh
Q 013681 344 LQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
..+...|+++||+++..+.+.++
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHHHHHHcCcEEEEeccccCc
Confidence 27899999999999988876544
No 127
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.83 E-value=28 Score=31.85 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+.+.|++.+.+..-. ....+.++.+++.+|++.+- +-.-.+.+++-.. .. .+.. ++=
T Consensus 12 ~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~iG--ag~v~~~~~~~~a-~~---~Ga~--~i~ 81 (190)
T cd00452 12 GDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALIG--AGTVLTPEQADAA-IA---AGAQ--FIV 81 (190)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEEE--EEeCCCHHHHHHH-HH---cCCC--EEE
Confidence 3578888899999999999999998864 23666888888888764433 3333444443222 22 2321 342
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHc-CCeEEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLHLMI 359 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~~~~ 359 (438)
=|- .+ ....+.++ +.++++..|=+ |+.++.++++. .+|++.+.+... |...... +.... +++++.
T Consensus 82 ~p~--~~-~~~~~~~~----~~~~~~i~gv~--t~~e~~~A~~~-Gad~i~~~p~~~~g~~~~~~---l~~~~~~~p~~a 148 (190)
T cd00452 82 SPG--LD-PEVVKAAN----RAGIPLLPGVA--TPTEIMQALEL-GADIVKLFPAEAVGPAYIKA---LKGPFPQVRFMP 148 (190)
T ss_pred cCC--CC-HHHHHHHH----HcCCcEECCcC--CHHHHHHHHHC-CCCEEEEcCCcccCHHHHHH---HHhhCCCCeEEE
Confidence 232 22 33334443 45788777533 88999888876 589999987543 4332222 22333 578776
Q ss_pred ccC
Q 013681 360 DGM 362 (438)
Q Consensus 360 ~s~ 362 (438)
.+-
T Consensus 149 ~GG 151 (190)
T cd00452 149 TGG 151 (190)
T ss_pred eCC
Confidence 543
No 128
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=85.74 E-value=10 Score=36.34 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCC-------C--------CCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE-------G--------YTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~-------~--------~s~~~A~~~l~ 268 (438)
++++..+.++++.+.|-..+||--+. +-+++++++++.+=-+-=|.|+.. + -..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 66788888999999999999998653 445678888875412334678731 1 13678899999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
++++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988655699865 4677788886 57889864
No 129
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.63 E-value=14 Score=37.36 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEec--------------CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~ 320 (438)
|..|+.++.+++++.|.+.++. .||= |....+++.++++.+.++ ++.+-..+.=...+..+++
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHH
Confidence 4568899999999999999985 8998 444567777777765432 2333333322334678888
Q ss_pred HHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+.+.+ ++.+.+-.. +- ...+.+.++.|++.|..+...-
T Consensus 95 ~a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 95 AAYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 888764 788776432 23 5668899999999999876543
No 130
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=85.50 E-value=21 Score=36.06 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=70.4
Q ss_pred HHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+-.-...++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHH
Confidence 44455666666655443 22333345555566655443332222355667777777777766654446666665445555
Q ss_pred HHHHHHhhccccC--CeEEEcCC-CCCH--HHHHHHHHcCCccEEEecCCcchH------HHHHHHHHHHHHcCCe
Q 013681 292 LHDVSNFARDTYG--ISVVADES-CRSL--NDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (438)
Q Consensus 292 ~a~L~~~~r~~~~--iPIa~dEs-l~~~--~d~~~ll~~~a~d~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (438)
..++.+.+++..+ +||..-=. -.+. ......++.+ ++. +|.+..|+ ..+..++...+..|+.
T Consensus 174 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 174 VRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 5555544444444 56644211 1111 1124445544 443 66665542 2345556666665543
No 131
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=85.29 E-value=27 Score=33.88 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-----CC---CchHHHHHHHHHHh-h-C-CCcEEEEeCCCCCCHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-----GR---NITADFDVLQAIHA-V-H-PHCSFILDANEGYTSEEAVEV 266 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-----G~---d~~~di~~l~aiR~-~-~-~~~~L~vDAN~~~s~~~A~~~ 266 (438)
.+++++.+.++++.+.|-+.|++-. |. +.++++++|..+-+ + - -++.|.+|....-..+.|++.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 4789999999999999999999942 11 34556666544333 2 1 278899998765555555543
No 132
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.09 E-value=28 Score=31.24 Aligned_cols=130 Identities=8% Similarity=0.064 Sum_probs=81.9
Q ss_pred ceeeeeeeCCCC----HHHHHHHHHHHhhcCCcEEEEecCC----C--chHHHHHHHHHHhhC-CCcEEEEeCCCCC--C
Q 013681 193 SLSTAITIPAVS----PAEASELASKYCKLGFSTLKLNVGR----N--ITADFDVLQAIHAVH-PHCSFILDANEGY--T 259 (438)
Q Consensus 193 ~ip~~~~i~~~~----~~~~~~~~~~~~~~Gf~~iKlKvG~----d--~~~di~~l~aiR~~~-~~~~L~vDAN~~~--s 259 (438)
++|+...++..+ .++..+.++...+.|...+.+-... + .+.-.+.++++++.. .++.+++..+-.+ +
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~ 127 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKT 127 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCC
Confidence 466656565555 7888888999999999999986532 1 334456667777753 5788888776443 5
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC----CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~----~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
+++..+..+.+.+.++. .|-..... .+++.++++.+.. ..++||..--...++..+.+.+..+
T Consensus 128 ~~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 128 ADEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhc
Confidence 66666666666666763 67655532 2677777776521 1145654333333566777777765
No 133
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=84.59 E-value=7.8 Score=38.24 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=47.5
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+.+++.++.+ ++-|.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36788988763 556888889999875 899999999873 7889999999999999874
No 134
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.19 E-value=25 Score=33.56 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCcEEEEecCCC---------------chHHHHHHHHHHhhCCCcEEEE-eCCC-CCCHHHHHHHHHHhhh
Q 013681 210 ELASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFIL-DANE-GYTSEEAVEVLGKLND 272 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d---------------~~~di~~l~aiR~~~~~~~L~v-DAN~-~~s~~~A~~~l~~L~~ 272 (438)
+.++.+.+.|+..+.+-+..+ ++.-.+.++.+++.+-.+.+.+ |+.. ..++++..++++.+.+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 345556677877777766532 2333344455555565666666 5654 4888888889999888
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEE
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~ 309 (438)
++.....+-+-.-.-..+.+.++-+.+++..+ +||..
T Consensus 158 ~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 158 AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 87652233222222233444444444443444 55543
No 135
>PRK06801 hypothetical protein; Provisional
Probab=84.10 E-value=9.5 Score=37.65 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc-h---HHHHHHHHHHHHHcCCeE
Q 013681 292 LHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-G---VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~-G---i~~~~~~~~~A~~~gi~~ 357 (438)
+..+...+.++.++||++-= ...+.+.+++.++.+ ++.|++|-+.. . +..++++.++|+.+|+.+
T Consensus 62 ~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 62 LVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 33333333346788887753 456778889999975 89999998876 2 777999999999999976
No 136
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.85 E-value=40 Score=33.96 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhcCC--cEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh---CCCCC--
Q 013681 207 EASELASKYCKLGF--STLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND---MGVIP-- 277 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf--~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~---~~l~~-- 277 (438)
+..+++.++++.|. ..+-+.+-. +.+.-.+.++.||+.+|++.+++ |.- |.++|....+.=.+ .+.+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCc
Confidence 34567888889976 999987764 45666778999999999988888 766 77777655543111 01110
Q ss_pred ceEecCCC---CCChh--hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 278 VLFEQPVH---RDDWS--GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 278 ~~iEqPl~---~~d~~--~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
..+|++.. ..+|. .++++++ ...+||..|--+.+..|+.+++..+ ++.+.+--
T Consensus 174 ~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~ 231 (326)
T PRK05458 174 VCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGS 231 (326)
T ss_pred ccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEech
Confidence 12465543 33443 3555554 4579999999999999999999885 77777653
No 137
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.80 E-value=57 Score=38.63 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHhhc--CCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HH
Q 013681 204 SPAEASELASKYCKL--GFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EV 266 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~--Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~ 266 (438)
+.+++...++.+-+. ||..+-+-.|.. -+++.++|+.+|+..|+..|..=..+ +|+ +++.+ ++
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 567888888888888 999999887742 25689999999998887766543333 454 34444 46
Q ss_pred HHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC----CeEEE-----c--CCCCCHHHH----HHHHHcCCccEE
Q 013681 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG----ISVVA-----D--ESCRSLNDV----QKVMQENLASVV 331 (438)
Q Consensus 267 l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~----iPIa~-----d--Esl~~~~d~----~~ll~~~a~d~i 331 (438)
++...+.++.+..|=+++. |.+.+....+.+++. + +-|.. | ...++++.+ +++.+. .+|.|
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~-Ga~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA-GAHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc-CCCEE
Confidence 8888887776555666665 356666555444432 3 22221 1 122455433 455555 47888
Q ss_pred EecCCcch-H--HHHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 332 NIKLAKFG-V--LGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 332 ~lk~~~~G-i--~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
.+|=+. | + ..+.+++...+ +.++++.+|+-..+|++.+.
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an 751 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLAT 751 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHH
Confidence 887665 6 3 34555555544 45899999987666655543
No 138
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.72 E-value=38 Score=31.65 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCcEEEEecCCC--c--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC-----ceE
Q 013681 210 ELASKYCKLGFSTLKLNVGRN--I--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP-----VLF 280 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d--~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~-----~~i 280 (438)
+++++..+.|-..+-+-.... + ++..+.++.+++. +++.+.++.+ +.+++. ++.+.+... ...
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCCEEEcCCcee
Confidence 345667789988766654321 2 4555678888887 7888888876 667764 333334320 012
Q ss_pred ecC---CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 281 EQP---VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 281 EqP---l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
+.. ....+++..+++++ ..++||...=-+.+.+++.++++.+ +|.+.+=-..+
T Consensus 151 t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~ 206 (221)
T PRK01130 151 TEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT 206 (221)
T ss_pred ecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc
Confidence 221 12224555566654 5689999888888999999999876 78877654433
No 139
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=83.72 E-value=24 Score=33.54 Aligned_cols=127 Identities=21% Similarity=0.167 Sum_probs=79.9
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC--------CCHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG--------YTSEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~--------~s~~~A 263 (438)
+|+-...++.+.++ ++++++.|. -|+=+|...-++ +.++.+-+.++ .+-+.+|+... .++.+.
T Consensus 79 ~~v~vgGGir~~ed----v~~~l~~Ga--~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~ 151 (233)
T cd04723 79 LGLWVDGGIRSLEN----AQEWLKRGA--SRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEEL 151 (233)
T ss_pred CCEEEecCcCCHHH----HHHHHHcCC--CeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHH
Confidence 34334445566554 455677784 445567644556 78877777654 58899999655 457776
Q ss_pred HHHHHHhhhCCCCCceEe--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 264 VEVLGKLNDMGVIPVLFE--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iE--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
++.++.. .-.+++.-|. -.....|++.++++++ .+++||..+=-+.+.+|++++++.+ ++.+.+
T Consensus 152 ~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 217 (233)
T cd04723 152 LRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLG-ASGALV 217 (233)
T ss_pred HHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 6666555 2222211111 1112235677777875 5789998888899999999999875 555554
No 140
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=83.55 E-value=25 Score=34.15 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHH----HHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ----AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IP 277 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~----aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~ 277 (438)
.+++.+.+.++++.++|-..+=+-.+...+++.+++. .+++. .++.|.||....=..+.|++. ...-++ .+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~-~~~plsIDT~~~~v~eaaL~~---~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEV-VDVPLCIDSPNPAAIEAGLKV---AKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHh-CCCCEEEeCCCHHHHHHHHHh---CCCCCEEEe
Confidence 4788888999999999999999988876666666553 33332 268899998655444444443 222111 11
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEE---EcCC-CC-CH----HHH----HHHHHcCC-ccEEEecCCcc--h--
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVV---ADES-CR-SL----NDV----QKVMQENL-ASVVNIKLAKF--G-- 339 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa---~dEs-l~-~~----~d~----~~ll~~~a-~d~i~lk~~~~--G-- 339 (438)
.+-|+ +..+.+..+++ +.+.|+. .|+. .. +. ..+ ..+.+.+- .+=+.+||... |
T Consensus 98 Is~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~ 169 (261)
T PRK07535 98 VSAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA 169 (261)
T ss_pred CCCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC
Confidence 13332 22456666665 4667765 3321 11 11 122 22333331 14588998653 2
Q ss_pred ---HHHHHHHHHHHHHc--CCeEEEcc
Q 013681 340 ---VLGTLQIIKATRKS--GLHLMIDG 361 (438)
Q Consensus 340 ---i~~~~~~~~~A~~~--gi~~~~~s 361 (438)
...+++.++..++. |.++.++-
T Consensus 170 ~~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 170 QDAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666666665 89998874
No 141
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.07 E-value=48 Score=32.34 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDAN----EGYT--SEE-AVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN----~~~s--~~~-A~~~l~ 268 (438)
+.++..+.+..+.+.||..|-+-.+.. -++|.+.++.+++..++.+|..=+. -+|+ |++ -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 677778888999999999998876531 3568899999999777655542222 1221 222 245666
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE-----cCCCCCHHHH----HHHHHcCCccEEEecCCc-c
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-----DESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~-----dEsl~~~~d~----~~ll~~~a~d~i~lk~~~-~ 338 (438)
...+.++....|--|+. +++.+....+.+++ .+.-+.. +-+-.+.+.+ +++.+. .++.|.++=+. .
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDM-GADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Confidence 66666654334555654 46656555444433 3443322 2244555554 344444 47777775544 2
Q ss_pred h-HHHHHHHHHHHHH-cCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 339 G-VLGTLQIIKATRK-SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 339 G-i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
+ .....+++...++ .++++-+|+-...+ ++.+..+++.-....++|
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G--lA~aN~laA~~aGa~~vd 222 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSG--LAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCC--hHHHHHHHHHHhCCCEEE
Confidence 3 4456666665544 47888888754444 443333433322345554
No 142
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=82.88 E-value=68 Score=33.99 Aligned_cols=177 Identities=18% Similarity=0.244 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEE--eC-C-CCC--CHHHHH-HHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFIL--DA-N-EGY--TSEEAV-EVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~v--DA-N-~~~--s~~~A~-~~l 267 (438)
.+.+++.+.++.+.+.||..|-+-.|..+ +++.++++.+++..++..+.. =+ | -+| -+++.+ .++
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 36788888999999999999999544322 457889999999878777754 22 3 245 245543 456
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCC-----CCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES-----CRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEs-----l~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
++..+.++...-|=.|+. |.+.+....+.++ +.+.-+....+ .++.+.+ +++.+.+ +|.|.++=+-
T Consensus 102 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~- 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA- 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-
Confidence 776777765345555554 4555554443333 24555543332 2333333 4555554 7888887655
Q ss_pred h---HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 339 G---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 339 G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
| -..+.+++...+ +.++++.+|+-...|++++ ..+++.-....++|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~A--N~laAieaGad~vD 226 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASL--AYLAAVEAGADMFD 226 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHH--HHHHHHHhCCCEEE
Confidence 5 345556655544 4588999988655555544 33433322344554
No 143
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=82.84 E-value=11 Score=37.15 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+.+.+.++.+ ++-|++|-|..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36788988763 556788899999985 899999999872 7789999999999998873
No 144
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.47 E-value=32 Score=34.77 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=69.6
Q ss_pred HHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=--..+++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 34445666666655443 22333445556666655444332222456677777777777766654345555554444555
Q ss_pred HHHHHHhhcccc--CCeEEEcCC-CCCH--HHHHHHHHcCCccEEEecCCcchH------HHHHHHHHHHHHcCCe
Q 013681 292 LHDVSNFARDTY--GISVVADES-CRSL--NDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (438)
Q Consensus 292 ~a~L~~~~r~~~--~iPIa~dEs-l~~~--~d~~~ll~~~a~d~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (438)
..++-+.+++.. ++||..-=. -.+. .....+++.+ ++ .+|.+..|+ ..+..++...+..|+.
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-AT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CC--EEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 555544444444 456544211 1111 1124455544 33 466665542 2245555556655543
No 145
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=82.28 E-value=12 Score=36.81 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+++.+.++.+ ++.|++|-+.. - +..+++++++|+++|+.+-
T Consensus 66 ~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 66 ERASVPVALHLDHGSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35688887763 556788899999986 99999999987 2 8889999999999999874
No 146
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=81.99 E-value=51 Score=31.90 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-----CC---CchHHHHHH----HHHHhhCCCcEEEEeCCCCCCHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-----GR---NITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVE 265 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-----G~---d~~~di~~l----~aiR~~~~~~~L~vDAN~~~s~~~A~~ 265 (438)
.+.+++.++++++++.|-..|=+-. |. +.+++++++ +.+++.. ++.|.+|....=-.+.|++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~~~v~e~al~ 94 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFRAEVARAALE 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCCHHHHHHHHH
Confidence 3778899999999999999988842 32 456777775 4555433 6789999755433333333
No 147
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=81.94 E-value=60 Score=32.60 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=78.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF------ 280 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i------ 280 (438)
..+.++.+++.|.+.|-+-... +.+.-.+.++.+|+.+|++.+++ ...-++++|....+. +....-+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~a----GaD~I~vg~g~G~ 168 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLIDA----GADGVKVGIGPGS 168 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHhc----CCCEEEECCCCCc
Confidence 3566778889999998887643 23445678999999888888887 333567776665542 3220011
Q ss_pred ------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 281 ------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 281 ------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.......++..+.++++.+ +..++||..|--+.+..++.+++..+ ++.+++-
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~VmiG 226 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVMLG 226 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEec
Confidence 1112223555666665432 23579999999999999999999865 6777764
No 148
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.86 E-value=11 Score=37.05 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+..+++++.+ ++-|.+|.|..- +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 35788988763 556788889999986 899999999873 7889999999999998763
No 149
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=81.77 E-value=20 Score=33.65 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=95.9
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+-..++++....++.+.+.|++++.+-...+ .-.+.++++++.+| +..+=|..-.+++|+.+..+.=.+ |
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~sp--~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~------f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRTP--AALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQ------F 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCCC--CHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCC------E
Confidence 3356899999999999999999999998753 33457888888888 778888888999987766554333 4
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHcCCeEE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (438)
|=-|-- -.+..+.|. +.++|+.-| +.|+.++..+++.+ ++.+-+=|.. +|-...++...- =--+++++
T Consensus 89 iVsP~~---~~ev~~~a~----~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~g-P~~~v~~~ 157 (211)
T COG0800 89 IVSPGL---NPEVAKAAN----RYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAG-PFPQVRFC 157 (211)
T ss_pred EECCCC---CHHHHHHHH----hCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcC-CCCCCeEe
Confidence 544443 245555664 578999876 67888998898876 5665555543 342222221100 01247777
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
+++-.
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 77654
No 150
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.69 E-value=36 Score=34.90 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhCCCCCceEec-------CC-CC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQ-------PV-HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEq-------Pl-~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.++.++++.+.+.++. +|.= -- .. .++..+.++.+ +.++||..+. +.+.++.+++++. .+|+|
T Consensus 141 ~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~a-GAD~V 212 (368)
T PRK08649 141 QRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRT-GAAGV 212 (368)
T ss_pred cCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEE
Confidence 3455566666665543 3331 11 11 25666666654 4689988744 8889999999985 58888
Q ss_pred EecCC---------cc--hH---HHHHHHHHHHHHc-------CCeEEEccCCchhHHHHH
Q 013681 332 NIKLA---------KF--GV---LGTLQIIKATRKS-------GLHLMIDGMIETRLATGF 371 (438)
Q Consensus 332 ~lk~~---------~~--Gi---~~~~~~~~~A~~~-------gi~~~~~s~~es~ig~~a 371 (438)
.+-.. .. |+ +...+..+.++++ +++++-.+-+.++-..+.
T Consensus 213 ~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diak 273 (368)
T PRK08649 213 LVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAK 273 (368)
T ss_pred EECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHH
Confidence 65421 11 21 2223333333433 688888776655444333
No 151
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=81.61 E-value=29 Score=32.61 Aligned_cols=128 Identities=14% Similarity=0.215 Sum_probs=78.5
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh-C-CCcEEEEeCCC------CCCH---HH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-H-PHCSFILDANE------GYTS---EE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~-~~~~L~vDAN~------~~s~---~~ 262 (438)
+|+....++.+.+++ +++.+.|...+ =+|...-+|.+.+..+.+. + ..+-+.+|... +|.. ..
T Consensus 73 ~pi~~ggGI~~~ed~----~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~ 146 (230)
T TIGR00007 73 VPVQVGGGIRSLEDV----EKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVS 146 (230)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCC
Confidence 344444455676654 44567888754 3554444566667666664 4 34777788652 2321 23
Q ss_pred HHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
..++++.+.+.+.. ..+ +......|++.++++++ .+++||...=-+.+.+|++++.+. .++.+++
T Consensus 147 ~~~~~~~~~~~g~~-~ii~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~-Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEELGLE-GIIYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKL-GVYGVIV 217 (230)
T ss_pred HHHHHHHHHhCCCC-EEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHC-CCCEEEE
Confidence 35566666666543 223 22223336777787775 578999888889999999998875 4776665
No 152
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=81.60 E-value=55 Score=32.80 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=89.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC---Cc--------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR---NI--------TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~---d~--------~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~ 262 (438)
.|+..++...++++..+.++...+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.|=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 466667766788888888888878899999999972 11 11246778888743 2233333222222 4
Q ss_pred HHHHHHHhhhCCCCCc-----eEecCCCC------------------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 263 AVEVLGKLNDMGVIPV-----LFEQPVHR------------------DDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~-----~iEqPl~~------------------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
..++++.+.+.++.-. ...-++.. .-++..++++ +..++||.+.=-+.+.+|+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~----~~~~ipIig~GGI~s~~Da 252 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS----GRVKASLAASGGVHDAEDV 252 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH----cccCCCEEEECCCCCHHHH
Confidence 5556666665443200 10111100 0011122333 3578999988899999999
Q ss_pred HHHHHcCCccEEEecCCcc--h---HHH-HHHHHHHHHHcCCe
Q 013681 320 QKVMQENLASVVNIKLAKF--G---VLG-TLQIIKATRKSGLH 356 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~~~~--G---i~~-~~~~~~~A~~~gi~ 356 (438)
.+.+.. .++.+|+=-..+ | +.. ..++.++.+++|..
T Consensus 253 ~e~l~a-GA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 253 VKYLLA-GADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHHHHc-CCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 999875 588888865432 4 222 33455556666654
No 153
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.41 E-value=12 Score=36.98 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=47.0
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.+.+.++.+ ++-|.+|.|..- +..++++.++|+++|+.+-
T Consensus 72 ~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 72 KYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788988763 455788889999985 889999999873 7889999999999999874
No 154
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=81.31 E-value=10 Score=35.56 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEec---CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQ---PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq---Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+++++..++...+.++++..++|. .....+.+-.+++++ .+++|+..+=-+.+.++++++++.+ +|.+++
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 5789999999999988887678888 444455666676665 5789999999999999999998776 677764
No 155
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=81.26 E-value=15 Score=37.40 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEec--CCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
-.|+.++-+++++.|.+.|+. .||= |.. +++++..+.+.+. .....|+.-= -.+..+++.+++.+ ++.+.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~v~~~~-r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQE---GLNAEICSLA-RALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHhc---CCCcEEEEEc-ccCHHHHHHHHHcC-cCEEE
Confidence 357899999999999999985 8997 554 3456666666542 2344444211 24678899888875 66666
Q ss_pred e--cC---------C--cch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 333 I--KL---------A--KFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 333 l--k~---------~--~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
+ .. . .-. +..+.+.++.|++.|+.+.++-
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 132 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA 132 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 6 11 1 112 5667889999999999887764
No 156
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=80.63 E-value=52 Score=35.15 Aligned_cols=106 Identities=15% Similarity=0.317 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHH
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll 323 (438)
+|+|-+--+-++++ ++.+++|-+.++. .||=....++ ++..+++++ .. ++||.++ .+.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554433334444 7888888888874 6775543332 344555553 43 6899887 778899999999
Q ss_pred HcCCccEEEecC--C---------cch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 324 QENLASVVNIKL--A---------KFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 324 ~~~a~d~i~lk~--~---------~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+.+ +|+|.+-. . -+| ++...++++.|+++|++++..+-.
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 875 88886532 1 134 455577888999999999985433
No 157
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=80.47 E-value=57 Score=32.76 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=83.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------Cc-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~-~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~ 262 (438)
+|+..++...++++..+.++.+.+.|+..+-+.++- +. +.-.+.+++|++.. ++.+.|=-+..+ ++
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 566777777788888888888888899999997752 11 12346677787743 344444433333 34
Q ss_pred HHHHHHHhhhCCCCCceEec--CCCC--CChh------------------hHHHHHHhhccccCCeEEEcCCCCCHHHHH
Q 013681 263 AVEVLGKLNDMGVIPVLFEQ--PVHR--DDWS------------------GLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEq--Pl~~--~d~~------------------~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~ 320 (438)
..++++.+++.++. .|-- -+.. -|++ .++.+. .+++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~-~~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA-ILSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH-HHHhhcCCCEEEECCCCCHHHHH
Confidence 55677777776653 2210 0000 1111 111111 12235689999888899999999
Q ss_pred HHHHcCCccEEEecCC
Q 013681 321 KVMQENLASVVNIKLA 336 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~ 336 (438)
+.+..+ ++.+|+=-.
T Consensus 256 e~l~aG-A~~V~v~t~ 270 (334)
T PRK07565 256 KMLLAG-ADVVMIASA 270 (334)
T ss_pred HHHHcC-CCceeeehH
Confidence 999865 888887543
No 158
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=80.46 E-value=21 Score=34.56 Aligned_cols=103 Identities=14% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEec--CC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC---cc
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL---AS 329 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a---~d 329 (438)
..|+.++.+++++.|.+.|+. .||= |. .+.+++.++.+.+. ..+..+..== -.+..+++.+++.+. ++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGLA-RAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEEc-cCCHhhHHHHHHhCCCCCCC
Confidence 357899999999999999985 8997 54 44567777777642 2345554211 134677887777653 67
Q ss_pred EEEecCCc----------c---h-HHHHHHHHHHHHHcCCeEEEccCCc
Q 013681 330 VVNIKLAK----------F---G-VLGTLQIIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 330 ~i~lk~~~----------~---G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (438)
.+.+=.+. . - +....+.++.|++.|+.+.++.+..
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 66663211 1 2 4557789999999999999886643
No 159
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=80.41 E-value=73 Score=32.66 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE-----ecC
Q 013681 209 SELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-----EQP 283 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i-----EqP 283 (438)
.+.++.+.+.++..+ +++.-.++++++|+.+=.+++|+ ++..+.++++.+.+.+.....+ +|=
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~ 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAE 169 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhh
Confidence 344444444554442 23444567777877543345555 2346677888887777642121 111
Q ss_pred C--CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 284 V--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 284 l--~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
- ...+|..+.++.+ +.++||..+. +.+.++.+++++. .+|+|+
T Consensus 170 ~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 170 HVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred ccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEEE
Confidence 1 1346777777775 5789998743 8899999999986 488887
No 160
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=80.34 E-value=38 Score=35.65 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA--NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDA--N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~ 287 (438)
.+++..+.|.+.|.+-... +.+.=.+.++.+++.|-.+...+-. ....+++..+++++++.+.+.+...|=+..---
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l 180 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL 180 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3444455555555555443 2221112334444444332222211 123445555555555555554434455555444
Q ss_pred ChhhHHHHHHhhccccCCeEEE
Q 013681 288 DWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
......+|.+.+|+..++||..
T Consensus 181 ~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 181 TPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CHHHHHHHHHHHHHhcCCeEEE
Confidence 4444444444444444555543
No 161
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=80.17 E-value=15 Score=37.10 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=82.2
Q ss_pred eeeeeeeCCC-------CHHHHHHHHHHHhhcCCcEEEEecCC----------CchHHHHHHHHHHhhCC----CcEEEE
Q 013681 194 LSTAITIPAV-------SPAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~-------~~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~~~di~~l~aiR~~~~----~~~L~v 252 (438)
+|+..++... +.++..+.+++. +.+...+-+.++- +.+.-.+.+++||+... ++.+.|
T Consensus 138 ~pvivsI~~~~~~~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~v 216 (344)
T PRK05286 138 IPLGINIGKNKDTPLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLV 216 (344)
T ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEE
Confidence 5555555432 466777777765 4468888887752 23444567889988432 355555
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceE----------ecCCC---CC----------ChhhHHHHHHhhcccc--CCeE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLF----------EQPVH---RD----------DWSGLHDVSNFARDTY--GISV 307 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~i----------EqPl~---~~----------d~~~~a~L~~~~r~~~--~iPI 307 (438)
=-+-.++.++..++++.+++.++.-.-+ +.|.. .+ .++..+++++ +. ++||
T Consensus 217 Klsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~----~~~~~ipI 292 (344)
T PRK05286 217 KIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYK----ELGGRLPI 292 (344)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHH----HhCCCCCE
Confidence 4444577778888999988766431011 11100 00 1223333433 45 6899
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
.+-=-+.+.+|+.+++..+ +|.|++=-
T Consensus 293 ig~GGI~s~eda~e~l~aG-Ad~V~v~~ 319 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAG-ASLVQIYS 319 (344)
T ss_pred EEECCCCCHHHHHHHHHcC-CCHHHHHH
Confidence 8888889999999888865 77766543
No 162
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=80.16 E-value=17 Score=35.74 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=45.4
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.++++++.+ ++.||+|-+... +..++++.++|+++|+.+-
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5678887652 456788889999875 899999998873 6679999999999999863
No 163
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=80.05 E-value=22 Score=35.03 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=45.5
Q ss_pred ccC-CeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYG-ISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~-iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.+ +||++- ....+.+.+++.++.+ ++.|++|.+... +..++++.++|+++|+.+.
T Consensus 71 ~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 71 RMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566 899887 4555778888999865 899999999875 5668999999999998654
No 164
>PLN02858 fructose-bisphosphate aldolase
Probab=79.99 E-value=18 Score=43.43 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceEecC---CCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCcc
Q 013681 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQP---VHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLAS 329 (438)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP---l~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d 329 (438)
|-.-|+.+.+...+++.++.+-. .-|.=- +.....+ +..+...+-++.++||++-= ...+.+.+++.++.+ ++
T Consensus 1118 afn~~n~e~~~avi~aAe~~~sP-vIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~G-f~ 1194 (1378)
T PLN02858 1118 AFNVYNLEGIEAVVAAAEAEKSP-AILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELG-FD 1194 (1378)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCC-EEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CC
Confidence 33445777777777777766532 122111 1111122 22222111235788988763 566788899999975 89
Q ss_pred EEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 330 VVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 330 ~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
-|++|-+..- +..+++++++|+.+|+.+-
T Consensus 1195 SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VE 1227 (1378)
T PLN02858 1195 SVMVDGSHLSFTENISYTKSISSLAHSKGLMVE 1227 (1378)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999999873 7889999999999999874
No 165
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=79.79 E-value=5.3 Score=37.92 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=81.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh-CC-CcEEEEeCCCC-------CCH---H
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HP-HCSFILDANEG-------YTS---E 261 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~~-~~~L~vDAN~~-------~s~---~ 261 (438)
+|+....++.+.++ ++++++.|.. |+=+|...-+|.+.++.+.+. ++ .+.+.+|+..+ |.. -
T Consensus 74 ~~i~vgGGIrs~ed----~~~ll~~Ga~--~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~ 147 (229)
T PF00977_consen 74 IPIQVGGGIRSIED----AERLLDAGAD--RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGI 147 (229)
T ss_dssp SEEEEESSE-SHHH----HHHHHHTT-S--EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEE
T ss_pred ccEEEeCccCcHHH----HHHHHHhCCC--EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCc
Confidence 44444555566665 4566788866 566675445666778888775 44 68899998765 432 2
Q ss_pred HHHHHHHHhhhCCCCCceEecCCCCC------ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 262 EAVEVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqPl~~~------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
+..++++++.++++. .+|=.-+..+ |++.++++++ ..++|+...=-+.+.+|++++.+.+ ++.+.+
T Consensus 148 ~~~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~d~~~~~~l~~----~~~~~viasGGv~~~~Dl~~l~~~G-~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELGAG-EIILTDIDRDGTMQGPDLELLKQLAE----AVNIPVIASGGVRSLEDLRELKKAG-IDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT-S-EEEEEETTTTTTSSS--HHHHHHHHH----HHSSEEEEESS--SHHHHHHHHHTT-ECEEEE
T ss_pred CHHHHHHHHHhcCCc-EEEEeeccccCCcCCCCHHHHHHHHH----HcCCCEEEecCCCCHHHHHHHHHCC-CcEEEE
Confidence 456677777777654 4554444432 5677777765 5799998887888999999988765 455554
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=79.72 E-value=91 Score=33.31 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe---cCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---QPV 284 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---qPl 284 (438)
.+.++.+++.|...+-+.... +-..-++.++.||+.+|++.|.+ ..-.|.++|....++ +.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~~a----Gad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLIDA----GAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHHHc----CCC--EEEECCcCC
Confidence 677888999999999988743 22334678999999888888777 455677777766543 332 331 110
Q ss_pred -----------CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch
Q 013681 285 -----------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (438)
Q Consensus 285 -----------~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G 339 (438)
-..++..+.++++.+ ++.++||..|--+.+..|+.+++..+ ++.+++--...|
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~~a~ 378 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALG-ADCVMLGSLLAG 378 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECchhcc
Confidence 012344444444332 24789999999999999999999876 777777644444
No 167
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.42 E-value=16 Score=34.44 Aligned_cols=106 Identities=9% Similarity=0.104 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC---------------chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d---------------~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
..+.+...++.+.+.|...+.+-+..+ ++.-.+.++.+|+.+.++.+...-...+++++..++.+
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 344444445555677877777766532 12222334555556667777776667778888888888
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEE
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~ 309 (438)
++.+++.....|-+-.-.-..+.+.++.+.+++..+ +||..
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~ 186 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF 186 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE
Confidence 888777654466666655555666666555555555 66644
No 168
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=78.98 E-value=31 Score=33.53 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=46.0
Q ss_pred hhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEE-EeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHH
Q 013681 216 CKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFI-LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH 293 (438)
Q Consensus 216 ~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~-vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a 293 (438)
.+.|...+.+-+.. +++.-.+.++.+++.|-.+.+. .|+. +++++...++++.+.+++.....|-+.+-.-..+.+.
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~ 170 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIK 170 (266)
T ss_pred hcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHH
Confidence 34555555554432 3333344445555544333332 2333 2566666666666666554433555555544455555
Q ss_pred HHHHhhccccC--CeEEE
Q 013681 294 DVSNFARDTYG--ISVVA 309 (438)
Q Consensus 294 ~L~~~~r~~~~--iPIa~ 309 (438)
++.+.+++..+ +||..
T Consensus 171 ~lv~~l~~~~~~~~~i~~ 188 (266)
T cd07944 171 RIISLLRSNLDKDIKLGF 188 (266)
T ss_pred HHHHHHHHhcCCCceEEE
Confidence 55544444444 55533
No 169
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=78.94 E-value=30 Score=34.95 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEec--------------CCCCCChhhHHHHHHhhccccCCeEE--EcCCCCCHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------Pl~~~d~~~~a~L~~~~r~~~~iPIa--~dEsl~~~~d 318 (438)
+..|+.++.+++++.|.+.++. .||= |....+++.++.+++. ..+..++ +.=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 4568899999999999999985 8887 2223456767776543 2234443 3323446788
Q ss_pred HHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 319 ~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
++++.+.+ ++.+.+-. .+. ...+.+.++.|++.|..+...-
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 88888764 78777543 234 6678999999999999887643
No 170
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.86 E-value=67 Score=31.28 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=67.9
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------------CchHHHHHHHHHHhhC-CCcEE
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVH-PHCSF 250 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~~di~~l~aiR~~~-~~~~L 250 (438)
+-.|.+.+.-+.+...+.++.+.+.|-..+.+-+-- .+++-++.++.+|+.. --+-|
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl 96 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI 96 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE
Confidence 334666666677888888888888999998887731 1234566777777532 12457
Q ss_pred EEeCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 251 ILDANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 251 ~vDAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|.=.|-- ..++|+.++.+.++++++...++=-|..+ .+.++.+++
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~--~eri~~i~~ 165 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS--KSRIQKIAR 165 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHH
Confidence 8777732 24578889999999998875566667654 334555544
No 171
>PRK09234 fbiC FO synthase; Reviewed
Probab=78.73 E-value=11 Score=42.90 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchH----HHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITA----DFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~----di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+++++.+.+++..+.|.+.|-+--|.+++. =.+.+++|++.+|++.+. +||+.|-... ....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~~---a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVNG---AARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHHH---HHHcCCC---
Confidence 789999999999999999999987754333 334578888888887663 4555443322 1222221
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
+ -+.+++|+++ .-..+|- +.+++.+. +++ -++.|.++....++++++.|++.|+++.-
T Consensus 627 ~--------~e~l~~LkeA--GLds~pg-t~aeil~d-~vr----------~~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 I--------REWLTALREA--GLDTIPG-TAAEILDD-EVR----------WVLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred H--------HHHHHHHHHh--CcCccCC-CchhhCCH-HHH----------hhcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 1 1334444431 0123442 22222221 232 12445555556778899999999999755
Q ss_pred ccC
Q 013681 360 DGM 362 (438)
Q Consensus 360 ~s~ 362 (438)
+-+
T Consensus 685 tmm 687 (843)
T PRK09234 685 TMM 687 (843)
T ss_pred ceE
Confidence 433
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=78.56 E-value=52 Score=34.61 Aligned_cols=126 Identities=22% Similarity=0.262 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceE--
Q 013681 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLF-- 280 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~i-- 280 (438)
+..++++.+++.|...|-+.... +-..-++.++.||+.+|++.+.+ -...++++|....+.=.++ ++++-.+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 34566778889999999998843 23445667888888888888777 4456788777766541111 0100000
Q ss_pred -e--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 281 -E--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 281 -E--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
. ..+-..++....++++.+ ++.++||..|--+.+..|+.++|..+ ++.+++--.
T Consensus 302 t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~G-A~~V~~G~~ 358 (450)
T TIGR01302 302 TRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAG-ADAVMLGSL 358 (450)
T ss_pred cceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECch
Confidence 0 011112344444444332 24789999999999999999999886 667776533
No 173
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=78.48 E-value=36 Score=31.66 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=95.0
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+-..++++..+.++.+.+.|++++.+-... ..-.+.++.+++.+|+ +.|=|..-.+.+++.+..+.=.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~aGA~------F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIAAGAQ------F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHHHT-S------E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHHcCCC------E
Confidence 344678888999999999999999998865 2346678888888887 55777788888887766554333 6
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-h-HHHHHHHHHHHHHcCCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-G-i~~~~~~~~~A~~~gi~~ 357 (438)
+=-|.- -+++.+.|+ +.++|..-| +.|+.++.++++.+ ++++-+=|... | ..-.+.+..- --++++
T Consensus 84 ivSP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p--~p~~~~ 151 (196)
T PF01081_consen 84 IVSPGF---DPEVIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP--FPDLPF 151 (196)
T ss_dssp EEESS-----HHHHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT--TTT-EE
T ss_pred EECCCC---CHHHHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc--CCCCeE
Confidence 666653 245555554 578998876 67899999999876 78988888654 6 5444433322 236899
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
++++-.
T Consensus 152 ~ptGGV 157 (196)
T PF01081_consen 152 MPTGGV 157 (196)
T ss_dssp EEBSS-
T ss_pred EEcCCC
Confidence 988654
No 174
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=78.10 E-value=32 Score=33.59 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA--NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDA--N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
.+.++...+.|...+.+-... +++.=.+.++.+++.|-.+...++. ...++++...++++++.+++.....|=+.+-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 444555567777777665543 3444444556666666555444442 2557788888888888887765446666665
Q ss_pred CCChhhHHHHHHhhccccCCeEEE
Q 013681 286 RDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 286 ~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
.-..+.+.++-+.++++.++||..
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEE
Confidence 555566666555555555566644
No 175
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.90 E-value=15 Score=38.91 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhhhCCCCCceEe---
Q 013681 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLNDMGVIPVLFE--- 281 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~~~l~~~~iE--- 281 (438)
+..+.++.+.++|-+.+-+.... .-..-++.++.||+.+|++.++. |.- +.++|...++. +.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---t~~~a~~l~~a----Gad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---TAEGTRDLVEA----GAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---CHHHHHHHHHc----CCC--EEEECc
Confidence 45567888889999998887754 33456677899999999988887 553 45666655543 211 221
Q ss_pred -----------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 282 -----------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 282 -----------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-.+...|+....++++.++ ..++||.+|--+.+..|+.+.+..+ ++.+++-
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~g-a~~v~~g 359 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAG-ASNVMIG 359 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcC-CCeeecc
Confidence 1112236777777776443 4689999999999999999999875 6666654
No 176
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=77.86 E-value=19 Score=35.83 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=46.7
Q ss_pred ccC-CeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~-iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
+.+ +||++-= ...+.+..++.++.+ ++-|++|-+.. - +..+++++++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 71 RYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 454 8988763 556888889999985 89999999986 2 7889999999999999874
No 177
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=77.41 E-value=40 Score=32.23 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=96.4
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CC-cEEEEeCCC-------CC------
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PH-CSFILDANE-------GY------ 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~-~~L~vDAN~-------~~------ 258 (438)
||.....++.+.+++. +++..|-. |+-|....=.|-++++.+.+.| .+ +.+.+|+-. .|
T Consensus 75 iPltVGGGI~s~eD~~----~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDAR----KLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHHH----HHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 5655556677887764 45667744 5555544445667888888764 44 677788732 34
Q ss_pred ----CHHHHHHHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 259 ----TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 259 ----s~~~A~~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+--++++|.++.++.+.. +-+=--+.. .|++..+.++. ...+|+.+.--.-+++++.+.+....+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~~----~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVRE----AVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHHH----hCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 225689999999988753 222222222 25666666664 689999888888899999988877766
Q ss_pred cEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 329 d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
|..---.-.+ |...-.++-++..++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 6533222222 4223345555666777765
No 178
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=77.30 E-value=19 Score=34.06 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=61.1
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCcc
Q 013681 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLAS 329 (438)
Q Consensus 251 ~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d 329 (438)
.-+|+...+++++..++..-+.+++|+.++|-==...+.+..+++++ .+ ++||..|=-+.+.++++++++.+ +|
T Consensus 125 v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-AD 199 (219)
T cd02812 125 VTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-AD 199 (219)
T ss_pred eeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-CC
Confidence 34556667899999999999999999889992112345555666654 56 89999999999999999999865 67
Q ss_pred EEEecC
Q 013681 330 VVNIKL 335 (438)
Q Consensus 330 ~i~lk~ 335 (438)
.+++--
T Consensus 200 ~VVVGs 205 (219)
T cd02812 200 TIVVGN 205 (219)
T ss_pred EEEECc
Confidence 777643
No 179
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.03 E-value=24 Score=34.84 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=45.3
Q ss_pred CCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 304 ~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++||++-= ...+.+...++++.+ ++-+++|-+..= +..+++++++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 47888763 556788899999986 899999999872 7889999999999999874
No 180
>PRK08185 hypothetical protein; Provisional
Probab=76.87 E-value=21 Score=35.13 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=46.5
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.++++++.+ ++.|++|-+..- +..++++.++|+++|+.+-
T Consensus 66 ~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 66 RSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5788888763 555888899999875 899999998873 7789999999999999883
No 181
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=76.77 E-value=51 Score=32.12 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=80.1
Q ss_pred HHHHHHhhcCCcEEEEecCCCchH----HHHHHHHHHhhC-C-CcEEEEeCC---C-------CCC---HHHHHHHHHHh
Q 013681 210 ELASKYCKLGFSTLKLNVGRNITA----DFDVLQAIHAVH-P-HCSFILDAN---E-------GYT---SEEAVEVLGKL 270 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d~~~----di~~l~aiR~~~-~-~~~L~vDAN---~-------~~s---~~~A~~~l~~L 270 (438)
+.++++++.|...+=+ |.-.-+ |-+.++.+-+.+ + .+.+.+|+. + +|. --++.+++.++
T Consensus 95 e~i~~~l~~Ga~rVii--gT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~ 172 (262)
T PLN02446 95 ENAMSYLDAGASHVIV--TSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEF 172 (262)
T ss_pred HHHHHHHHcCCCEEEE--chHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHH
Confidence 4567788999776554 532222 378888888764 5 588889985 4 242 22344555555
Q ss_pred hhCCCCCceEecC------CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC--CccEEEecCC--cch-
Q 013681 271 NDMGVIPVLFEQP------VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNIKLA--KFG- 339 (438)
Q Consensus 271 ~~~~l~~~~iEqP------l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~--a~d~i~lk~~--~~G- 339 (438)
.+.++. .+|=.= +.--|++.++++++ .+++||.+.=-+.+.+|+.++.+.+ ...++.=|.- .-|
T Consensus 173 ~~~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~ 247 (262)
T PLN02446 173 LAAYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGN 247 (262)
T ss_pred HHhCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCC
Confidence 544432 233222 23336778888876 5899998877889999999888764 3443333443 335
Q ss_pred --HHHHHHHH
Q 013681 340 --VLGTLQII 347 (438)
Q Consensus 340 --i~~~~~~~ 347 (438)
+.++++|-
T Consensus 248 ~~l~ea~~~~ 257 (262)
T PLN02446 248 LPYDDVVAWH 257 (262)
T ss_pred ccHHHHHHHH
Confidence 44555554
No 182
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.30 E-value=54 Score=28.91 Aligned_cols=133 Identities=12% Similarity=0.068 Sum_probs=75.4
Q ss_pred eeeeeeeCCCCHHHHH-HHHHHHhhcCCcEEEEecCCC--chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 013681 194 LSTAITIPAVSPAEAS-ELASKYCKLGFSTLKLNVGRN--ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~-~~~~~~~~~Gf~~iKlKvG~d--~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (438)
+|+...+...++.+.. ..+....+.|+..+-+..+.. ++...+.++++++..+++.+.+..+.....+.+. +
T Consensus 58 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~ 132 (200)
T cd04722 58 LPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----A 132 (200)
T ss_pred CcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----H
Confidence 3444444444443332 224566788999999888752 2456778899998767777776666544433331 3
Q ss_pred hhCCCCC-----ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 271 NDMGVIP-----VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 271 ~~~~l~~-----~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.++++.. .+.++.....+......+. .+++..++||..+--+.+.+++.++++.+ +|++.+
T Consensus 133 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~v 198 (200)
T cd04722 133 EEAGVDEVGLGNGGGGGGGRDAVPIADLLLI-LAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIV 198 (200)
T ss_pred HHcCCCEEEEcCCcCCCCCccCchhHHHHHH-HHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEe
Confidence 3333321 1222222111110111111 11235789999888888889998898874 777764
No 183
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.28 E-value=22 Score=35.04 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=46.6
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.+.++++.+ ++-|.+|-|..= +..++++.++|+.+|+.+-
T Consensus 72 ~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 72 KASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788888763 556788899999985 899999998872 7789999999999998874
No 184
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=75.75 E-value=28 Score=34.30 Aligned_cols=132 Identities=14% Similarity=0.203 Sum_probs=82.3
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DA 254 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DA 254 (438)
++|+..-+... +++ .+.+.++.||+.+=+.... +++++++.-+.+.+. +- +.+|- | +.
T Consensus 74 ~VPV~lHLDHg~~~e----~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 149 (284)
T PRK09195 74 HHPLALHLDHHEKFD----DIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDE 149 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCccccc
Confidence 34544444433 443 3455678999999998765 789999988877662 21 22221 1 11
Q ss_pred -CCCC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHH
Q 013681 255 -NEGY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQ 324 (438)
Q Consensus 255 -N~~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~ 324 (438)
...| +|++|.+|.++..- .| .|=.|-.+| .-|++-++++++ .+++|+.+- =|=...++++++++
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~ 223 (284)
T PRK09195 150 ADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIK 223 (284)
T ss_pred ccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHH
Confidence 1226 59999999986421 11 121144445 457888888876 578998765 47677778899988
Q ss_pred cCCccEEEecC
Q 013681 325 ENLASVVNIKL 335 (438)
Q Consensus 325 ~~a~d~i~lk~ 335 (438)
.+ +.=||+.-
T Consensus 224 ~G-i~KiNi~T 233 (284)
T PRK09195 224 LG-ICKVNVAT 233 (284)
T ss_pred cC-CeEEEeCc
Confidence 76 44566654
No 185
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=75.69 E-value=27 Score=34.54 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred cc--CCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 302 TY--GISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~--~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
+. ++||++- ....+.+.+++.++.+ ++-|.+|-|.. - +..++++.++|+.+|+.+-
T Consensus 73 ~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 73 AYPYGVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred hccCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45 7888876 3566888899999985 99999999987 3 7789999999999999874
No 186
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.56 E-value=17 Score=33.49 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecC--CC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHH--HHHHHHHcCCccEE
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQP--VH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN--DVQKVMQENLASVV 331 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP--l~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~--d~~~ll~~~a~d~i 331 (438)
..++++|++.+++| +-++. |||-. +. +.-.+..+.|++. ..+..|..|=.+.++. +++++.+.+ +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 35789999999999 65664 99995 42 2234555666541 2356777776555554 567777665 8888
Q ss_pred EecCCcchHHHHHHHHHHHHHcCCeEEEc
Q 013681 332 NIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 332 ~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (438)
.+.... +.....++++.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 876543 2223467888899999999975
No 187
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=75.19 E-value=40 Score=33.23 Aligned_cols=132 Identities=14% Similarity=0.230 Sum_probs=83.3
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E----e----CCC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D----ANE 256 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v----D----AN~ 256 (438)
+|+..-+... +.+. +.+.++.||+.+=+.... ++++++++.+.+.+. +- +.+|- | | ...
T Consensus 78 VPV~lHLDHg~~~e~----i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~ 153 (285)
T PRK07709 78 VPVAIHLDHGSSFEK----CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGV 153 (285)
T ss_pred CcEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccc
Confidence 4555554443 4443 335578999999999765 789999988888762 21 22231 2 1 112
Q ss_pred CC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCC
Q 013681 257 GY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENL 327 (438)
Q Consensus 257 ~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a 327 (438)
-| +|++|.+|.++..- +| .|=.|-.+| .-|++-++++++ .+++|+.+-= |=...++++++++.+
T Consensus 154 ~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~G- 226 (285)
T PRK07709 154 IYADPAECKHLVEATGIDCLAPALGSVHGPYKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLG- 226 (285)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcC-
Confidence 26 59999999997531 10 111133344 347888888875 6789987654 667778899999876
Q ss_pred ccEEEecCC
Q 013681 328 ASVVNIKLA 336 (438)
Q Consensus 328 ~d~i~lk~~ 336 (438)
+.=||+.-.
T Consensus 227 i~KiNi~T~ 235 (285)
T PRK07709 227 TSKINVNTE 235 (285)
T ss_pred CeEEEeChH
Confidence 545777654
No 188
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=75.04 E-value=74 Score=29.83 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred HHHHHHHhhCC-CcEEEEeCCCCCCHHHHHHHHHHhhhC-CCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCC
Q 013681 236 DVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC 313 (438)
Q Consensus 236 ~~l~aiR~~~~-~~~L~vDAN~~~s~~~A~~~l~~L~~~-~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl 313 (438)
+.++.+++..+ .+.+-|+ +.+.++.++.+++|.+. +. .+||=|....-++..+.|.+ .++++... .+
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~--~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T-~V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGN--VVVKIPVTEDGLKAIKKLSE-----EGIKTNVT-AI 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCC--EEEEEcCcHhHHHHHHHHHH-----cCCceeeE-Ee
Confidence 45666666443 3555565 46788888888888766 42 48999998755666666653 37777655 47
Q ss_pred CCHHHHHHHHHcCCccEEEecCCcc------hHHHHHHHHHHHHHcCCe
Q 013681 314 RSLNDVQKVMQENLASVVNIKLAKF------GVLGTLQIIKATRKSGLH 356 (438)
Q Consensus 314 ~~~~d~~~ll~~~a~d~i~lk~~~~------Gi~~~~~~~~~A~~~gi~ 356 (438)
++..+.....+.+ ++|+.+-..++ |+.-..++.++++++|++
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 8888988888876 78999988773 366678999999999977
No 189
>PRK06801 hypothetical protein; Provisional
Probab=75.04 E-value=71 Score=31.51 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CCCcEEEEeC--------------CCCCC-HHHHHHHHHHhh
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HPHCSFILDA--------------NEGYT-SEEAVEVLGKLN 271 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~~~~L~vDA--------------N~~~s-~~~A~~~l~~L~ 271 (438)
+++.++.||+.+-+.-.. ++++.++..+.+.+. +-+++.-+.+ ...++ +++|.++.++..
T Consensus 90 i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg 169 (286)
T PRK06801 90 VVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG 169 (286)
T ss_pred HHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC
Confidence 445578999999997654 678888888887662 2122211111 11254 799999997642
Q ss_pred h--C-----CCCCceEecCCCCCChhhHHHHHHhhccccCCeEE-EcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 272 D--M-----GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV-ADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 272 ~--~-----~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa-~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
- + ..|- ....-+.-+++.++++++ .+++|+. .|=|=++.++++++++.+ ++-|++.-...
T Consensus 170 vD~LAvaiGt~Hg--~y~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T~~~ 237 (286)
T PRK06801 170 IDALAVAIGNAHG--KYKGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYTGMS 237 (286)
T ss_pred cCEEEeccCCCCC--CCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehhHHH
Confidence 1 0 0110 112223457888888875 5778864 455777788999999876 66677765544
No 190
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.03 E-value=48 Score=32.67 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=74.8
Q ss_pred HHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E-eC-------CCCC-CHHHHHHHHHHhhh---
Q 013681 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L-DA-------NEGY-TSEEAVEVLGKLND--- 272 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v-DA-------N~~~-s~~~A~~~l~~L~~--- 272 (438)
.+.++.||+.+-+.-.. +++++++..+.+.+. +- +.+|. | .. ...| +|++|.+|+++..-
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L 170 (283)
T PRK07998 91 KQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDML 170 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCee
Confidence 34468899999997554 788899988888762 21 22331 2 11 1124 59999999987541
Q ss_pred ---CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 273 ---MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 273 ---~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+| .|=.|-. +.-|++-++++++ .+++|+.+- =|=.+.++++++++.+ +.=||+.-.
T Consensus 171 AvaiGt~HG~Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Te 231 (283)
T PRK07998 171 AVSIGNVHGLEDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYK-VAKVNIASD 231 (283)
T ss_pred ehhccccccCCCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcC-CcEEEECHH
Confidence 11 1211222 4557888888875 679998665 4767778899999876 555676654
No 191
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=74.86 E-value=88 Score=31.88 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=45.2
Q ss_pred cccCCeEEEcC-CCCCH--HHHHHHHHcC----------CccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSL--NDVQKVMQEN----------LASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~--~d~~~ll~~~----------a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+. +.++++++.+ .++-|++|-|.. - +..++++.++|++.|+.+-
T Consensus 96 e~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 96 EHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 35788988763 44455 4468888876 389999999987 3 7889999999999999874
No 192
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=74.75 E-value=70 Score=33.70 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHH-----hhcC----CcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 203 VSPAEASELASKY-----CKLG----FSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 203 ~~~~~~~~~~~~~-----~~~G----f~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
.+.++..+.++.+ ...| -..|-++... +.++-...++++++.. ++.|.||. ++++.+.+-++...+
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPLSIDT---~dpevleaAleagad 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT-DLPLILCS---EDPAVLKAALEVVAD 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCEEEeC---CCHHHHHHHHHhcCC
Confidence 3556666666666 3344 4555555533 4444455666666643 78899997 788887777777765
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHH----HHHHcCCccEEEecCCcchHHHHH
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ----KVMQENLASVVNIKLAKFGVLGTL 344 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~----~ll~~~a~d~i~lk~~~~Gi~~~~ 344 (438)
..-.+.. +..++++.|.++++ +.+.|+.+.-. +.+.+. .+.+.+ +.=+++||.--|+..++
T Consensus 178 ~~plI~S----at~dN~~~m~~la~----~yg~pvVv~~~--dl~~L~~lv~~~~~~G-I~dIILDPg~ggf~ksl 242 (450)
T PRK04165 178 RKPLLYA----ATKENYEEMAELAK----EYNCPLVVKAP--NLEELKELVEKLQAAG-IKDLVLDPGTENIKETL 242 (450)
T ss_pred CCceEEe----cCcchHHHHHHHHH----HcCCcEEEEch--hHHHHHHHHHHHHHcC-CCcEEECCCCchhhhhH
Confidence 3211223 33578889988876 56778766322 133332 233344 46689999774454443
No 193
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=74.69 E-value=46 Score=31.06 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccC--CeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~--iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+.+++++.++++-+-|+. .||=.++..+. +.++.|++ +.+ +.|..+ ++.+.++++..++.+ .+++..--
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaG-TV~~~~~~~~a~~aG-A~fivsp~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAG-TVLSPEQVDRLADAG-GRLIVTPN 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEE-ecCCHHHHHHHHHcC-CCEEECCC
Confidence 789999999999999985 89999876553 35666664 344 334433 788899999999886 67766532
Q ss_pred CcchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
.. .++++.++..|+.+.+++...+
T Consensus 92 ~~------~~v~~~~~~~~~~~~~G~~t~~ 115 (206)
T PRK09140 92 TD------PEVIRRAVALGMVVMPGVATPT 115 (206)
T ss_pred CC------HHHHHHHHHCCCcEEcccCCHH
Confidence 22 4667788899999999976543
No 194
>PRK08508 biotin synthase; Provisional
Probab=74.56 E-value=64 Score=31.54 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-CC-----CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-GR-----NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGV 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-G~-----d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l 275 (438)
.+++++.+.+++..+.|.+.|=+-. |. +++.=.+.++.||+.+|++.+.. .++-.+.+++.++.++ ++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~-s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIA-CNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEe-cCCCCCHHHHHHHHHcCCCEEcc
Confidence 5899999999988889998887732 22 23344566778888788765432 4666665544444343 444432
Q ss_pred CCceEec----CCCCCChhhHHHHHHhhcc-----ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC-----C-c---
Q 013681 276 IPVLFEQ----PVHRDDWSGLHDVSNFARD-----TYGISVVADESCRSLNDVQKVMQENLASVVNIKL-----A-K--- 337 (438)
Q Consensus 276 ~~~~iEq----Pl~~~d~~~~a~L~~~~r~-----~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~-----~-~--- 337 (438)
.++--++ =++..+|+..-+..+.+++ .+++-+.++|+.....+....+....++.+-+.. . .
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~ 198 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA 198 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC
Confidence 2111121 1223455543322111211 1334456677766666555555554555433322 1 1
Q ss_pred --chHHHHHHHHHHHHHc
Q 013681 338 --FGVLGTLQIIKATRKS 353 (438)
Q Consensus 338 --~Gi~~~~~~~~~A~~~ 353 (438)
....+.++++++|+-.
T Consensus 199 ~~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 199 PTLSADEALEIVRLAKEA 216 (279)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 1144677777777765
No 195
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=74.41 E-value=89 Score=30.48 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=93.0
Q ss_pred eeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------------CchHHHHHHHHHHhhCCC--cEEE
Q 013681 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVHPH--CSFI 251 (438)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~~di~~l~aiR~~~~~--~~L~ 251 (438)
.|.+.+.-+++...+.+..+.+.|-..+.+-+-- .+++-++.++.+|+.+++ +-||
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm 100 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLM 100 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4666666678888888888888999998887731 245667888888987665 5666
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcc----cc
Q 013681 252 LDANEGY------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD----TY 303 (438)
Q Consensus 252 vDAN~~~------------------------s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~----~~ 303 (438)
.=+|--| .++++-++.+..+++++.+.++=-|..++ +.+.++++..+. -+
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~--~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD--ERLKKIAEAASGFIYYVS 178 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHhCCCcEEEEe
Confidence 6666422 45777788888888888766777777653 344555432100 01
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch--HHHHHHHHHHHHHcCCeEEEccC
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
..++.+-++- ...++.++++.. .-+.=.|-.+| ++....+.++++. -=++.++|.
T Consensus 179 ~~GvTG~~~~-~~~~~~~~v~~v--r~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 179 RMGVTGARNP-VSADVKELVKRV--RKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred cccccCCCcc-cchhHHHHHHHH--HHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 1122222222 112244444321 11222233334 6655555555555 556677664
No 196
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=74.14 E-value=47 Score=31.85 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=82.3
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCC--C--------CCC--HH
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDAN--E--------GYT--SE 261 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN--~--------~~s--~~ 261 (438)
|+-...++.+.+++ +.+.+.|.. |+=+|.-.-+|-+.++.+.+.+ ..+.+.+|+. + +|. ..
T Consensus 76 ~v~vgGGIrs~e~~----~~~l~~Ga~--~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~ 149 (243)
T TIGR01919 76 VEELSGGRRDDSSL----RAALTGGRA--RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGG 149 (243)
T ss_pred CEEEcCCCCCHHHH----HHHHHcCCC--EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCC
Confidence 33344456676654 456677766 4555653345667777777755 4678889984 2 243 22
Q ss_pred HHHHHHHHhhhCCCCCceEecCCCCC------ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHH--HcCCccEEEe
Q 013681 262 EAVEVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM--QENLASVVNI 333 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqPl~~~------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll--~~~a~d~i~l 333 (438)
...+++++++++++. .+|=.-+..+ |++.++++++ .+++||...=-+.+.+|+.++- ....++.+.+
T Consensus 150 ~~~~~~~~~~~~g~~-~ii~tdI~~dGt~~G~d~~l~~~l~~----~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 150 DLEVLERLLDSGGCS-RVVVTDSKKDGLSGGPNELLLEVVAA----RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred cHHHHHHHHHhCCCC-EEEEEecCCcccCCCcCHHHHHHHHh----hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 356778888887764 3554444432 6777777775 5789988877888999998763 2335666665
Q ss_pred cCC
Q 013681 334 KLA 336 (438)
Q Consensus 334 k~~ 336 (438)
--.
T Consensus 225 g~A 227 (243)
T TIGR01919 225 GKL 227 (243)
T ss_pred hHH
Confidence 433
No 197
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.06 E-value=77 Score=29.56 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCcEEEEecCCC--c--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--ec-
Q 013681 210 ELASKYCKLGFSTLKLNVGRN--I--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--EQ- 282 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d--~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--Eq- 282 (438)
++++...+.|-..+=+..... . +...+.++++++.+ ++.+.++.+ +++++.. +.+.+.. || +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~~----a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEALN----AAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHHH----HHHcCCC--EEEccCc
Confidence 356777788988777654321 2 24556778888888 788888654 6777633 3334442 34 20
Q ss_pred ---C----CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 283 ---P----VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 283 ---P----l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+ ....+++..+++++ ..++||...=-+.+.+++.++++.+ +|.+.+--
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~vGs 207 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVVGS 207 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEch
Confidence 0 11124556666654 4689998888888999999999976 78877643
No 198
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.91 E-value=80 Score=29.68 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (438)
+.++..+.++.+.+.|+..|-+-....-+++.+.++.+++..++.++..-.. ...++....++.+.+.++. ++.-.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~g~~--~i~i~ 87 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCR--ANEEDIERAVEAAKEAGID--IIRIF 87 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEE--SCHHHHHHHHHHHHHTTSS--EEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeee--ehHHHHHHHHHhhHhccCC--EEEec
Confidence 5677788888888999999877754445788889999988654444433222 3444433446666666764 45544
Q ss_pred CCCCC--------------hhhHHHHHHhhccccCCeEEE---cCCCCCHHHH----HHHHHcCCccEEEecCCc-ch-H
Q 013681 284 VHRDD--------------WSGLHDVSNFARDTYGISVVA---DESCRSLNDV----QKVMQENLASVVNIKLAK-FG-V 340 (438)
Q Consensus 284 l~~~d--------------~~~~a~L~~~~r~~~~iPIa~---dEsl~~~~d~----~~ll~~~a~d~i~lk~~~-~G-i 340 (438)
++..+ ++...+..+.+|+ .+..+.. |.+-.+++.+ +.+.+. .++.|.++=+. .. .
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKE-LGYEVAFGCEDASRTDPEELLELAEALAEA-GADIIYLADTVGIMTP 165 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH-TTSEEEEEETTTGGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-S-H
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh-cCCceEeCccccccccHHHHHHHHHHHHHc-CCeEEEeeCccCCcCH
Confidence 54444 4444444444432 3444433 3455566655 334444 46777775444 22 4
Q ss_pred HHHHHHHHHHH-HcC-CeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 341 LGTLQIIKATR-KSG-LHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 341 ~~~~~~~~~A~-~~g-i~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
....+++...+ ..+ +++-+|+-...++ +.+..+++......++|
T Consensus 166 ~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl--a~An~laA~~aGa~~id 211 (237)
T PF00682_consen 166 EDVAELVRALREALPDIPLGFHAHNDLGL--AVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEBBTTS---HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCccc--hhHHHHHHHHcCCCEEE
Confidence 44556555554 445 6666666433333 33333443333345554
No 199
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.76 E-value=24 Score=34.74 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=45.6
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~ 357 (438)
+.++||++-= ...+.+.++++++.+ ++.|.+|-+..= +..++++.++|+++|+.+
T Consensus 72 ~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 72 KMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 5778887653 556788889999885 899999998872 778999999999999987
No 200
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=73.65 E-value=44 Score=30.70 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=74.5
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCC--CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
+...++++..+.++.+ +.|.+.+|+ |. ....-.+.++.+|+.+++..+.+|..-. ++.. .-++.+.+.+..
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad- 78 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGAD- 78 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCC-
Confidence 4556788888888887 788887665 52 2234477899999987777777776322 2221 124455555643
Q ss_pred ceE----ecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCC-HHHHHHHHHcCCccEEEecCCc
Q 013681 278 VLF----EQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRS-LNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 278 ~~i----EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~-~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+| |-|- .+.....+.++ +.++++..+= +..+ .++++.+.+. .+|++.+.|..
T Consensus 79 -~i~vh~~~~~--~~~~~~i~~~~----~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~pg~ 136 (206)
T TIGR03128 79 -IVTVLGVADD--ATIKGAVKAAK----KHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHTGL 136 (206)
T ss_pred -EEEEeccCCH--HHHHHHHHHHH----HcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcCCc
Confidence 55 6432 12334444443 4689988762 3333 3566666655 68999887753
No 201
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=73.65 E-value=98 Score=30.60 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++ +..++.+.+=.. . +.+++++.++..++.+..
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 67888899999999999888765432 23444555676666 456778887664 5 899999999999998865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhccccCCeEEEcC---CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~~iPIa~dE---sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
-..+=-|.. ..+ .+-++.+++ .+++||.+=. ...+++.+.++.+. .+.++-+|-+ .| +....+++
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~va~----~~~lpi~lYn~~g~~l~~~~l~~L~~~-~pni~giK~s-~~d~~~~~~~~ 177 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEAVCK----STDLGVIVYNRDNAVLTADTLARLAER-CPNLVGFKDG-VGDIELMQRIV 177 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEeC-CCCHHHHHHHH
Confidence 224444432 111 223445554 5789987533 23455566777633 4788999987 46 77666665
Q ss_pred HHHHHcCCeEEEcc
Q 013681 348 KATRKSGLHLMIDG 361 (438)
Q Consensus 348 ~~A~~~gi~~~~~s 361 (438)
+... -+..+..+.
T Consensus 178 ~~~~-~~f~vl~G~ 190 (303)
T PRK03620 178 RALG-DRLLYLGGL 190 (303)
T ss_pred HHcC-CCeEEEeCC
Confidence 4332 355555553
No 202
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=73.64 E-value=45 Score=32.92 Aligned_cols=118 Identities=15% Similarity=0.284 Sum_probs=76.5
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE----------EeCCC-CC-CHHHHHHHHHHhhh
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI----------LDANE-GY-TSEEAVEVLGKLND 272 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~----------vDAN~-~~-s~~~A~~~l~~L~~ 272 (438)
+.+.++.||+.+=+.... +++++++..+.+.+. +- +.+|- .|.+. -| +|++|.+|.++..-
T Consensus 90 i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tgv 169 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGI 169 (284)
T ss_pred HHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCC
Confidence 455678999999988765 789999888777652 21 22221 12222 26 59999999987431
Q ss_pred ------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 273 ------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 273 ------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
.| .|=.|-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.+ +.=||+.-.
T Consensus 170 D~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~G-i~KiNi~T~ 234 (284)
T PRK12737 170 DSLAVAIGTAHGLYKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLG-ICKVNVATE 234 (284)
T ss_pred CEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcH
Confidence 11 121133444 347888888875 578998765 4777777889998876 555676643
No 203
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=73.23 E-value=30 Score=35.09 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=45.9
Q ss_pred ccC-CeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc---------h--HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF---------G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~-iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~---------G--i~~~~~~~~~A~~~gi~~~ 358 (438)
+.+ +||++-= ...+.+..++.++.+ ++.|++|-|.. - +..+++++++|+.+|+.+-
T Consensus 70 ~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 70 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 454 8888763 556888899999985 89999999964 2 7889999999999999873
No 204
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=73.16 E-value=1.1e+02 Score=32.25 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=65.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc-cCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~-~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
-+++|++.-+-+. +..+.++.|.+.++. .|+=-...++-....+.-+.+|++ .++||.++ .+.+.++.+.+++.+
T Consensus 211 g~l~V~aav~~~~-~~~~r~~~L~~aG~d--~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G-~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 211 GRLIVGAAVGTRE-FDKERAEALVKAGVD--VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAG-NVATAEQAKALIDAG 286 (450)
T ss_pred CCEEEEEEecCch-hHHHHHHHHHHhCCC--EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEE-eCCCHHHHHHHHHhC
Confidence 3566666555443 345555666666653 566444333222222222223334 46898776 467889999999875
Q ss_pred CccEEEecC-------C----cch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 327 LASVVNIKL-------A----KFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 327 a~d~i~lk~-------~----~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+|+|.+-+ + -+| ++...++++.|++.+++++..+-+
T Consensus 287 -ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi 336 (450)
T TIGR01302 287 -ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGI 336 (450)
T ss_pred -CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCC
Confidence 78875432 1 134 345577788888999999985543
No 205
>PRK15063 isocitrate lyase; Provisional
Probab=73.09 E-value=1.2e+02 Score=31.56 Aligned_cols=103 Identities=13% Similarity=-0.003 Sum_probs=71.6
Q ss_pred eeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEe--------cCC-------CchHHHHHHHHHHhh----CCCcEE--
Q 013681 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLN--------VGR-------NITADFDVLQAIHAV----HPHCSF-- 250 (438)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlK--------vG~-------d~~~di~~l~aiR~~----~~~~~L-- 250 (438)
+|+..-+ +.+.+..+.+.++.+.+.|...|-|. .|. +.++=+++|+++|.. +.+.-|
T Consensus 147 ~PIiADaDtGfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiA 226 (428)
T PRK15063 147 APIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIA 226 (428)
T ss_pred CCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5654433 33455567777889999999888763 231 467778899998863 334333
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
|-||..+ -..++|++.+.+..+ +-...|+|-..+ +.+.++++++.+
T Consensus 227 RTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~--d~ee~~~fa~~v 300 (428)
T PRK15063 227 RTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTP--DLEEARRFAEAI 300 (428)
T ss_pred ECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCC--CHHHHHHHHHhh
Confidence 6799754 357899999999988 544569997554 578888888754
No 206
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.99 E-value=87 Score=29.70 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCC------------CCCH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------------GYTS 260 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~------------~~s~ 260 (438)
.+|+....++.+.+++. ++.+.|+.. +=+|.-.- |.+.++.+-+.++++.+.+|+.+ .+++
T Consensus 73 ~~pv~~gGGIrs~edv~----~l~~~G~~~--vivGtaa~-~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~ 145 (228)
T PRK04128 73 GLKVQVGGGLRTYESIK----DAYEIGVEN--VIIGTKAF-DLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKV 145 (228)
T ss_pred CCCEEEcCCCCCHHHHH----HHHHCCCCE--EEECchhc-CHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCH
Confidence 35666667777887764 445678764 34565333 67788888887777999999843 2345
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+++++++.+. + .+|=.-+.. +...++.+|.+. ..++||...=-+.+.+|+.++.+.+ ++.+.+
T Consensus 146 ~~~~~~~~~~~--~---~ii~t~i~~dGt~~G~d~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g-~~gviv 210 (228)
T PRK04128 146 EDAYEMLKNYV--N---RFIYTSIERDGTLTGIEEIERF---WGDEEFIYAGGVSSAEDVKKLAEIG-FSGVII 210 (228)
T ss_pred HHHHHHHHHHh--C---EEEEEeccchhcccCHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 56555555551 1 234444432 233444455431 2468887777788888888887753 555444
No 207
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=72.84 E-value=72 Score=33.82 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCC--CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDAN--EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN--~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d 288 (438)
++...+.|.+.|.+-... +++.=...++.+++.|..+...++.. ..++++..+++++++.+.+.+...|=+..---.
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~ 180 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLT 180 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcC
Confidence 444445555555554443 22221222333344443333333211 234455555555555555544334445444444
Q ss_pred hhhHHHHHHhhccccCCeEEE
Q 013681 289 WSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~ 309 (438)
.....+|.+.+|++.++||..
T Consensus 181 P~~v~~Lv~~lk~~~~vpI~~ 201 (467)
T PRK14041 181 PKRAYELVKALKKKFGVPVEV 201 (467)
T ss_pred HHHHHHHHHHHHHhcCCceEE
Confidence 444444444444444555543
No 208
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=72.67 E-value=62 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=18.4
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 236 DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 236 ~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
+.++.+.+.|.+.--.-|.+|..+|.++.+..+++.
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk 193 (592)
T PRK09282 158 ELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALK 193 (592)
T ss_pred HHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHH
Confidence 334444444444444455555555555555555554
No 209
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=72.48 E-value=1e+02 Score=30.20 Aligned_cols=149 Identities=9% Similarity=0.117 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHhhc-CCcEEEEecCC------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 204 SPAEASELASKYCKL-GFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~-Gf~~iKlKvG~------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
|.+.+.+.++.+++. |.+.+=+-... ..++=.+.++.+.+ ....+.+.+=++. .+.+++++.++..++.+.
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELAKHAEELGY 97 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHHHHHHHcCC
Confidence 677788889999898 98887665432 23334445566665 3456777774443 678999999999998875
Q ss_pred CCceEecCCC--CC---ChhhHHHHHHhhcccc-CCeEEEcC------CCCCHHHHHHHHHcCCccEEEecCCcch-HHH
Q 013681 276 IPVLFEQPVH--RD---DWSGLHDVSNFARDTY-GISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (438)
Q Consensus 276 ~~~~iEqPl~--~~---d~~~~a~L~~~~r~~~-~iPIa~dE------sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~ 342 (438)
.-..+=-|.. .. -++-+..+++ .+ ++||.+=. .-.+.+.+.++.+ .+.++-+|-+- | +..
T Consensus 98 d~v~~~~P~y~~~~~~~i~~~~~~v~~----a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~ 170 (288)
T cd00954 98 DAISAITPFYYKFSFEEIKDYYREIIA----AAASLPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYD 170 (288)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHH----hcCCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHH
Confidence 4212233432 11 1233445554 57 68886521 2235556677764 58889999764 5 655
Q ss_pred HHHHHHHHHHcCCeEEEcc
Q 013681 343 TLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s 361 (438)
..++++... .++.+..++
T Consensus 171 ~~~~~~~~~-~~~~v~~G~ 188 (288)
T cd00954 171 LERIRAASP-EDKLVLNGF 188 (288)
T ss_pred HHHHHHhCC-CCcEEEEec
Confidence 555443221 245555443
No 210
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=72.39 E-value=1.1e+02 Score=32.56 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe----
Q 013681 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---- 281 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---- 281 (438)
+..+.++.+.++|-+.+-+.... ..+.-++.+++||+.+|++.+++| ..-|.++|....+. +.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~~~----G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLLEA----GAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHHHh----CCC--EEEECCc
Confidence 44567888899999999888764 346677889999999999999993 24466766665543 221 221
Q ss_pred -------c---CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 282 -------Q---PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 282 -------q---Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+ .+-..+.....++++.++ ..++||.+|--+.+..|+.+.|..+ ++.+.+-
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~G-A~~vm~g 357 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAG-ASNVMVG 357 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcC-CCEEeec
Confidence 1 111123444444443332 3589999999999999999999876 5666654
No 211
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.28 E-value=90 Score=29.60 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHH----hhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH----AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR----~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
..++++..+.++.+.+.|++++.+-... ..-.+.++.++ +.+| ++.|=|..-.|.+++.+.++ .+.
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a~~----aGA-- 92 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALYIQ----LGA-- 92 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHHHH----cCC--
Confidence 4588999999999999999999999854 12334455554 3456 47788888899998766443 454
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHcCCe
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLH 356 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~ 356 (438)
.||=-|.-. .++.+.|. +.++|+.-| +.|+.++.+.++.+ ++++-+=|... |..-.+.+..-- -+++
T Consensus 93 ~FiVsP~~~---~~v~~~~~----~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~i~ 160 (222)
T PRK07114 93 NFIVTPLFN---PDIAKVCN----RRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PWTK 160 (222)
T ss_pred CEEECCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CCCe
Confidence 377777653 33444443 578898876 67899999999986 78888888655 544333322222 4688
Q ss_pred EEEccCC
Q 013681 357 LMIDGMI 363 (438)
Q Consensus 357 ~~~~s~~ 363 (438)
+++++-+
T Consensus 161 ~~ptGGV 167 (222)
T PRK07114 161 IMPTGGV 167 (222)
T ss_pred EEeCCCC
Confidence 8888754
No 212
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.15 E-value=47 Score=34.50 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=83.3
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhh
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~ 271 (438)
+-+...++. +++ ..++++.++++|-..|-+.... +-+.-.+.++.+|+.+|+..|++ |. -|.++|...++.
T Consensus 142 l~v~aavg~-~~~-~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~a-- 214 (404)
T PRK06843 142 LRVGAAVSI-DID-TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLISV-- 214 (404)
T ss_pred eEEEEEEeC-CHH-HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHHc--
Confidence 444455543 333 4567888889999999998865 34566688999999999877654 43 356666665543
Q ss_pred hCCCCCceE----e----------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 272 DMGVIPVLF----E----------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 272 ~~~l~~~~i----E----------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+.. +| + ..+...++..+..+++.+ +..++||..|--+.+..|+.+.+..+ ++.+++-
T Consensus 215 --GaD--~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~-~~~~vpVIAdGGI~~~~Di~KALalG-A~aVmvG 285 (404)
T PRK06843 215 --GAD--CLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC-KNTNICIIADGGIRFSGDVVKAIAAG-ADSVMIG 285 (404)
T ss_pred --CCC--EEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEc
Confidence 221 21 1 111112455554444322 25789999999999999999999876 6677654
No 213
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=71.97 E-value=1.3e+02 Score=32.72 Aligned_cols=163 Identities=10% Similarity=0.102 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh----hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~----~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.|.+...+|+.++.+.|-..+.+-+-. .+|.+.++.|++ .|-++.|..|-+-.+. -|+..++.++...|.+=
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~--~A~~a~~~v~kiRINPG 113 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPK--VADVAAQYAEKVRINPG 113 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcH--HHHHHHHhhCCEEECCC
Confidence 466777899999999999999988854 567777777776 3567899999875544 45565555554332211
Q ss_pred eEecC-------C-CCCCh--------hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 279 LFEQP-------V-HRDDW--------SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 279 ~iEqP-------l-~~~d~--------~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
=|=.+ . ..+++ +....+.+.++ +.++||=.|=..-|+. .++++... + +--| +.
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak-~~~~~iRIGvN~GSL~--~~i~~~yg-~------tpe~mVe 183 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICK-ENHTAIRIGVNHGSLS--DRIMSRYG-D------TPEGMVE 183 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-C------ChHHHHH
Confidence 11111 0 00010 12222333322 4677777776666665 44555322 1 3348 77
Q ss_pred HHHHHHHHHHHcCCeEEEccCCch--hHHHHHHHHHHhhc
Q 013681 342 GTLQIIKATRKSGLHLMIDGMIET--RLATGFALHLAAGL 379 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es--~ig~~a~~hla~al 379 (438)
.+++.+++|++.|..=.+=|+=.| ...+.|.-.++..+
T Consensus 184 SAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 184 SCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 889999999998776444333222 23333444455443
No 214
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=71.95 E-value=44 Score=33.11 Aligned_cols=53 Identities=6% Similarity=0.137 Sum_probs=43.2
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeE
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~ 357 (438)
++||++-=.-.+.+.++++++.+ ++.||+|-+..- +..++++.++|+++|+.+
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 67877654333778889999865 899999998873 677999999999999988
No 215
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=71.92 E-value=60 Score=30.05 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCcEEEEecCC--CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh------CCCCCceE
Q 013681 209 SELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND------MGVIPVLF 280 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~--d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~------~~l~~~~i 280 (438)
.+.++++.+.|-..+-+..-. .++.-.+.++.||+.+ .-+|.|.. +.+|++...+.=.+ ++ |-
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLsG----YT 124 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLSG----YT 124 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTTT----SS
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEccccc----CC
Confidence 355677789999999988753 2355667889999988 88999985 57887765543111 11 22
Q ss_pred ecCC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 281 EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 281 EqPl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
++.- ...|++-+++|++ .++||...-.+.+++++.++++.++..++
T Consensus 125 ~~t~~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 125 PYTKGDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp TTSTTSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred CCCCCCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 2222 2336778888874 48999888899999999999999865543
No 216
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.86 E-value=1.1e+02 Score=30.24 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=83.0
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhc---CCcEEEEecCC-----------CchHHHHHHHHHHhhC--C-CcEEEEeCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKL---GFSTLKLNVGR-----------NITADFDVLQAIHAVH--P-HCSFILDANE 256 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~---Gf~~iKlKvG~-----------d~~~di~~l~aiR~~~--~-~~~L~vDAN~ 256 (438)
.|+..++... ++++.+.+++..+. |...|-+.++- +++.-.+.++++++.. | -++|+.|
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~--- 167 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPY--- 167 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC---
Confidence 4666777655 88888877777554 68999998872 3444455677777742 3 2444443
Q ss_pred CCCHHHHHHHHHHhhhC--CCC-Cc-----------eE--ecCCC--CC----------ChhhHHHHHHhhcccc--CCe
Q 013681 257 GYTSEEAVEVLGKLNDM--GVI-PV-----------LF--EQPVH--RD----------DWSGLHDVSNFARDTY--GIS 306 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~--~l~-~~-----------~i--EqPl~--~~----------d~~~~a~L~~~~r~~~--~iP 306 (438)
|+.++..+.++.+.+. ++. +. -+ +.|.- .. .+..++.+.+ ++++. .+|
T Consensus 168 -~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ip 245 (294)
T cd04741 168 -TDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQ 245 (294)
T ss_pred -CCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCC
Confidence 5666666777777665 221 00 01 22211 11 1222322222 22345 499
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
|.+-=-+.+.+|+.+.+.. .++.+|+=-..+
T Consensus 246 Iig~GGI~s~~da~e~l~a-GA~~Vqv~ta~~ 276 (294)
T cd04741 246 IIGVGGVLDGRGAFRMRLA-GASAVQVGTALG 276 (294)
T ss_pred EEEeCCCCCHHHHHHHHHc-CCCceeEchhhh
Confidence 9988889999999999986 588888866544
No 217
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.78 E-value=72 Score=34.09 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCc--EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHC--SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~--~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
...+++..+.|...|.+-... |++.=...++++++.+... .|..--....+++..+++++++.+.+.+...|-+..-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaG 179 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAA 179 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcc
Confidence 455667777888887776664 4433333466677665433 3322223466788888888888888876556777776
Q ss_pred CCChhhHHHHHHhhcccc--CCeEEEc
Q 013681 286 RDDWSGLHDVSNFARDTY--GISVVAD 310 (438)
Q Consensus 286 ~~d~~~~a~L~~~~r~~~--~iPIa~d 310 (438)
--......+|.+.+++.. .+||..-
T Consensus 180 ll~P~~~~~LV~~Lk~~~~~~ipI~~H 206 (499)
T PRK12330 180 LLKPQPAYDIVKGIKEACGEDTRINLH 206 (499)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 556666666666666666 4777653
No 218
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=71.44 E-value=54 Score=31.79 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=79.5
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC----chHHHHHHHHHHhhC-C-CcEEEEeCC----C-------
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----ITADFDVLQAIHAVH-P-HCSFILDAN----E------- 256 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----~~~di~~l~aiR~~~-~-~~~L~vDAN----~------- 256 (438)
+|+....++.+ +.++++++.|...+=+ |.. ..-+.+.++.+.+.+ + .+.+.+|+. +
T Consensus 77 ~~v~vGGGIr~-----e~v~~~l~aGa~rVvI--GS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~ 149 (253)
T TIGR02129 77 GGLQVGGGIND-----TNAQEWLDEGASHVIV--TSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMN 149 (253)
T ss_pred CCEEEeCCcCH-----HHHHHHHHcCCCEEEE--CcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEEC
Confidence 45445555543 3466788889765544 532 222367888888865 4 588899984 3
Q ss_pred CCCH---HHHH-HHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-
Q 013681 257 GYTS---EEAV-EVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE- 325 (438)
Q Consensus 257 ~~s~---~~A~-~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~- 325 (438)
+|.. -++. +++++++++ +. ..|=.=+.. -|++.++++++ .+++||.+-=-+.+.+|++++-+.
T Consensus 150 GW~~~t~~~~~~e~~~~~~~~-~~-~il~TdI~rDGtl~G~dlel~~~l~~----~~~ipVIASGGv~s~eDi~~l~~~~ 223 (253)
T TIGR02129 150 KWQTITDLELNAETLEELSKY-CD-EFLIHAADVEGLCKGIDEELVSKLGE----WSPIPITYAGGAKSIDDLDLVDELS 223 (253)
T ss_pred CCcccCCCChHHHHHHHHHhh-CC-EEEEeeecccCccccCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhc
Confidence 2532 1334 566666554 43 234333333 36788888886 589999887788999999887332
Q ss_pred -CCccEEEecC
Q 013681 326 -NLASVVNIKL 335 (438)
Q Consensus 326 -~a~d~i~lk~ 335 (438)
+..+++.=+.
T Consensus 224 ~g~~~aIvG~A 234 (253)
T TIGR02129 224 KGKVDLTIGSA 234 (253)
T ss_pred CCCCcEEeeeh
Confidence 4456555444
No 219
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=71.22 E-value=1.1e+02 Score=32.38 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHc
Q 013681 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
+-+|+|+++-+-++ +..+.++.|.+.++.+.-++.+ . ++...+....+.++++. ++||..+ .+.+.++.+++++.
T Consensus 214 ~g~l~V~aai~~~~-~~~e~a~~L~~agvdvivvD~a-~-g~~~~vl~~i~~i~~~~p~~~vi~g-~v~t~e~a~~l~~a 289 (486)
T PRK05567 214 QGRLRVGAAVGVGA-DNEERAEALVEAGVDVLVVDTA-H-GHSEGVLDRVREIKAKYPDVQIIAG-NVATAEAARALIEA 289 (486)
T ss_pred CCCEEEEeecccCc-chHHHHHHHHHhCCCEEEEECC-C-CcchhHHHHHHHHHhhCCCCCEEEe-ccCCHHHHHHHHHc
Confidence 34788888877655 3467777777777653344433 1 11222222222333455 7897765 56789999999987
Q ss_pred CCccEEEec--C---------Ccch---HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 326 NLASVVNIK--L---------AKFG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 326 ~a~d~i~lk--~---------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+ +|+|.+= + .-+| ++...++++.|++.+++++..+-+-+
T Consensus 290 G-ad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~ 342 (486)
T PRK05567 290 G-ADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRY 342 (486)
T ss_pred C-CCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCC
Confidence 5 7887541 1 1223 33445566667778999998665533
No 220
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.11 E-value=28 Score=31.85 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec--CCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHH--HHHHH
Q 013681 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN--DVQKV 322 (438)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~--d~~~l 322 (438)
+.+.+| ..+++++.+.++.|.+. +. |||= |+- ..-.+..+.+++ ...++||..+=.+.+.. .++.+
T Consensus 3 ~~~a~d---~~~~~~~~~~~~~l~~~-i~--~ieig~~~~~~~g~~~i~~i~~---~~~~~~i~~~~~v~~~~~~~~~~~ 73 (202)
T cd04726 3 LQVALD---LLDLEEALELAKKVPDG-VD--IIEAGTPLIKSEGMEAVRALRE---AFPDKIIVADLKTADAGALEAEMA 73 (202)
T ss_pred eEEEEc---CCCHHHHHHHHHHhhhc-CC--EEEcCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEEeccccHHHHHHH
Confidence 344454 35789999999999998 75 9998 552 222445555543 12578998885545443 34566
Q ss_pred HHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEE
Q 013681 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 323 l~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
.+.+ +|++.+...- +.....++++.++++|+.+.+
T Consensus 74 ~~aG-ad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 74 FKAG-ADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HhcC-CCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEE
Confidence 6654 8888776433 223456788899999999985
No 221
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.89 E-value=51 Score=33.46 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=45.5
Q ss_pred ccC-CeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc-----------hHHHHHHHHHHHHHcCCeEE
Q 013681 302 TYG-ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-----------GVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~-iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~-----------Gi~~~~~~~~~A~~~gi~~~ 358 (438)
+.+ +||++-= ...+.+...+.++.+ ++.|.+|-+.. =+..+++++++|+.+|+.+-
T Consensus 72 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 72 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 454 8887763 556788889999985 89999999965 27789999999999999874
No 222
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=70.55 E-value=52 Score=32.50 Aligned_cols=132 Identities=15% Similarity=0.246 Sum_probs=81.8
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E----e---C-CC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D---A-NE 256 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v----D---A-N~ 256 (438)
+|+..-+... +++.+ .+.++.||+.+=+.... ++++++++-+.+.+. +- +.+|- | | . +.
T Consensus 78 vPV~lHLDHg~~~e~i----~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 153 (286)
T PRK08610 78 IPVAIHLDHGSSFEKC----KEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGI 153 (286)
T ss_pred CCEEEECCCCCCHHHH----HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCccc
Confidence 4554444433 44443 44578899999999765 789999988877662 21 22221 1 1 1 12
Q ss_pred CC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCC
Q 013681 257 GY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENL 327 (438)
Q Consensus 257 ~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a 327 (438)
-| +|++|.+|.++-.- +| .|=.|-.+| .-|++-++++++ .+++|+.+-= |=...++++++++.+
T Consensus 154 ~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~G- 226 (286)
T PRK08610 154 IYADPKECQELVEKTGIDALAPALGSVHGPYKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFG- 226 (286)
T ss_pred ccCCHHHHHHHHHHHCCCEEEeeccccccccCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCC-
Confidence 26 59999999987431 11 121133334 347888888875 5789987654 666777889998876
Q ss_pred ccEEEecCC
Q 013681 328 ASVVNIKLA 336 (438)
Q Consensus 328 ~d~i~lk~~ 336 (438)
+.=||+.-.
T Consensus 227 I~KiNi~T~ 235 (286)
T PRK08610 227 TAKINVNTE 235 (286)
T ss_pred CeEEEeccH
Confidence 444666644
No 223
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=70.39 E-value=49 Score=33.62 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=45.6
Q ss_pred cc-CCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc-----------hHHHHHHHHHHHHHcCCeEE
Q 013681 302 TY-GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-----------GVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~-~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~-----------Gi~~~~~~~~~A~~~gi~~~ 358 (438)
+. .+||++-= ...+.+.+++.++.+ ++.|++|-|.. =+..+++++++|+.+|+.+-
T Consensus 72 ~~~~VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 72 MYPDIPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred hcCCCcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45 48988763 556788889999986 89999999854 27789999999999999874
No 224
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=70.29 E-value=28 Score=33.75 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHhh-cCCcEEEEecCCCchHHHHHHHHHHhhC-C-----CcEEEEeCC-CCC-----C---HHHHHHH
Q 013681 203 VSPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVH-P-----HCSFILDAN-EGY-----T---SEEAVEV 266 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~-~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-----~~~L~vDAN-~~~-----s---~~~A~~~ 266 (438)
+++++..+.+.++.+ .|-..+|+--| .+-.++++++++.+ | ++.=+-|.+ ++| + .+++++.
T Consensus 87 ~~~~~av~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 87 TSPEQALRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 468888777666666 99999999876 35677888888754 2 111112221 222 2 4678888
Q ss_pred HHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 267 l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
++++++.+....++|-+ + . +..+++++ ++++|+.
T Consensus 164 a~a~~~AGA~~i~lE~v-~-~--~~~~~i~~----~v~iP~i 197 (254)
T cd06557 164 ALALEEAGAFALVLECV-P-A--ELAKEITE----ALSIPTI 197 (254)
T ss_pred HHHHHHCCCCEEEEcCC-C-H--HHHHHHHH----hCCCCEE
Confidence 88898888654577777 3 2 57778876 5788865
No 225
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=70.25 E-value=47 Score=32.80 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=44.5
Q ss_pred CeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 305 ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 305 iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+||++-= ...+.+.+++.++.+ ++-|.+|-+..= +..+++++++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 7887763 556788899999985 899999999873 7889999999999999874
No 226
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=70.21 E-value=46 Score=34.44 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=40.7
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEe-----------cCCcch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNI-----------KLAKFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~l-----------k~~~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+.|.++ .+.+.+..++|+.++ +|.+.+ +++-|| .+...++++.|+.+|++++-.+-.
T Consensus 293 l~ViaG-NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi 363 (503)
T KOG2550|consen 293 LQIIAG-NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGI 363 (503)
T ss_pred ceeecc-ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCc
Confidence 445444 445677888888875 666543 555566 567889999999999999876543
No 227
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.21 E-value=88 Score=28.64 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+++.|.+.+.+..-.. ...+.++.+++..+. +.+.++.-+..+++ +.+.++.-. ++=
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~--~~~e~~~~~~~~~~~--~~~g~gtvl~~d~~-~~A~~~gAd-----gv~ 89 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEITWNSD--QPAELISQLREKLPE--CIIGTGTILTLEDL-EEAIAAGAQ-----FCF 89 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCC--CHHHHHHHHHHhCCC--cEEeEEEEEcHHHH-HHHHHcCCC-----EEE
Confidence 45888888899999999999999987542 345667777776653 33444455566543 333333322 332
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc--hHHHHHHHHHHHHHc-CCeEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--GVLGTLQIIKATRKS-GLHLM 358 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~--Gi~~~~~~~~~A~~~-gi~~~ 358 (438)
=|-- +. ...+.++ ..+++...| +.++.++.+..+. .+||+-+=|+.. |+....++. ... +++++
T Consensus 90 ~p~~--~~-~~~~~~~----~~~~~~i~G--~~t~~e~~~A~~~-Gadyv~~Fpt~~~~G~~~l~~~~---~~~~~ipvv 156 (187)
T PRK07455 90 TPHV--DP-ELIEAAV----AQDIPIIPG--ALTPTEIVTAWQA-GASCVKVFPVQAVGGADYIKSLQ---GPLGHIPLI 156 (187)
T ss_pred CCCC--CH-HHHHHHH----HcCCCEEcC--cCCHHHHHHHHHC-CCCEEEECcCCcccCHHHHHHHH---hhCCCCcEE
Confidence 2332 22 2333443 346677777 8999999888876 589998877653 455544433 334 58988
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
..+-+
T Consensus 157 aiGGI 161 (187)
T PRK07455 157 PTGGV 161 (187)
T ss_pred EeCCC
Confidence 76543
No 228
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=70.10 E-value=96 Score=33.21 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhhhCCCCCceE-----
Q 013681 208 ASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLNDMGVIPVLF----- 280 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~~~l~~~~i----- 280 (438)
..++++.++++|...+-+.... .-..-++.++.||+.+|+..|++ |. -+.++|....+. +.....+
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~~a----GaD~i~vg~g~G 321 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLIQA----GVDGLRVGMGSG 321 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHHHc----CcCEEEECCCCC
Confidence 3567788888888888888754 23344567888888888777654 44 355666555542 2220111
Q ss_pred ---ecCC----CC---CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 281 ---EQPV----HR---DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 281 ---EqPl----~~---~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
.-+. -. ..+..++++++ ..++||.+|--+.+..|+.++|..+ ++.+++--
T Consensus 322 ~~~~t~~~~~~g~~~~~~i~~~~~~~~----~~~vpVIadGGI~~~~di~kAla~G-A~~V~vGs 381 (505)
T PLN02274 322 SICTTQEVCAVGRGQATAVYKVASIAA----QHGVPVIADGGISNSGHIVKALTLG-ASTVMMGS 381 (505)
T ss_pred ccccCccccccCCCcccHHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEch
Confidence 0111 00 12334455543 5789999999999999999999986 66666543
No 229
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=69.98 E-value=49 Score=32.16 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=57.1
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------------CchHHHHHHHHHHhhCCC--cE
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVHPH--CS 249 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~~di~~l~aiR~~~~~--~~ 249 (438)
+-.|.+.+.-|.+...+.++.+.+.|-..+-+-+-- ++++-++.++.+|+..++ +-
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 91 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIV 91 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEE
Confidence 334566666677887888888888888888887731 234456778888854444 44
Q ss_pred EEEeCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 250 FILDANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 250 L~vDAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
||--.|-- ..++|+.++.+.++++++.+.++=.|..
T Consensus 92 lm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t 151 (259)
T PF00290_consen 92 LMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT 151 (259)
T ss_dssp EEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS
T ss_pred EEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 56555521 2346677777777788876556666643
No 230
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=69.93 E-value=58 Score=32.09 Aligned_cols=119 Identities=14% Similarity=0.224 Sum_probs=76.9
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhhh
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLND 272 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~~ 272 (438)
+.+.++.||+.+=+.... ++++++++.+.+.+. +- +.+|- | +.+ ..| +|++|.+|.++..-
T Consensus 88 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 167 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGV 167 (282)
T ss_pred HHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCc
Confidence 455678999999998765 789999988887662 21 22221 1 111 125 49999999986431
Q ss_pred ------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 273 ------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 273 ------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+| .|=.|-.+| .=|++-++++++ .+++|+.+- =|=.+.++++++++.+ +.=||+.-..
T Consensus 168 D~LAvaiGt~HG~yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 233 (282)
T TIGR01858 168 DSLAVAIGTAHGLYKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELG-ICKVNVATEL 233 (282)
T ss_pred CEEecccCccccCcCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 11 121134445 457888888875 578998765 4667777889998876 5456766433
No 231
>PLN02591 tryptophan synthase
Probab=69.30 E-value=1.1e+02 Score=29.49 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred eeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------------CchHHHHHHHHHHhhCC-CcEEEEe
Q 013681 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVHP-HCSFILD 253 (438)
Q Consensus 197 ~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~~di~~l~aiR~~~~-~~~L~vD 253 (438)
|.+.+.-+.+...+.++.+.+.|-..+.+-+-- .+++-++.++.+|+... -+-||-=
T Consensus 7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y 86 (250)
T PLN02591 7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY 86 (250)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 455555567777777777878888888776631 23455667777775321 2347777
Q ss_pred CCCC------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 254 ANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 254 AN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
.|-- +.++|+-++.+.++++++.+.++=.|-.+
T Consensus 87 ~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 87 YNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred ccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 7732 35688888888888888765566555553
No 232
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=69.08 E-value=1.5e+02 Score=32.12 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.|.+...+|+.++.+.|-..+.+-+-. .++.+.++.|++. |-++.|..|-+ |++.-|+..++.++...|.+=
T Consensus 42 ~D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~A~~a~~~vdkiRINPG 117 (606)
T PRK00694 42 TDVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVADIH--FFPQAAMHVADFVDKVRINPG 117 (606)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEeecC--CChHHHHHHHHhcCceEECCc
Confidence 466777899999999999999988854 5777777777763 56788888887 455666666666554332210
Q ss_pred ---e----EecCCCCC-C--------hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 279 ---L----FEQPVHRD-D--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 279 ---~----iEqPl~~~-d--------~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
. ++.-...+ + .+....|.+.++ +.++||=.|=..-|+. .++++... + +--| +.
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ak-e~~~~IRIGvN~GSL~--~~i~~~yG-~------tpegmVe 187 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCK-RLGKAMRIGVNHGSLS--ERVMQRYG-D------TIEGMVY 187 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-C------CHHHHHH
Confidence 1 11111100 0 122233333222 4677777776666665 44555322 1 3348 77
Q ss_pred HHHHHHHHHHHcCCeEEEccCCchh--HHHHHHHHHHh
Q 013681 342 GTLQIIKATRKSGLHLMIDGMIETR--LATGFALHLAA 377 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~--ig~~a~~hla~ 377 (438)
.+++.+++|++.|..=.+=|+=.|+ +...|.--++.
T Consensus 188 SAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~ 225 (606)
T PRK00694 188 SALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAK 225 (606)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHH
Confidence 8999999999988765554443333 33334434443
No 233
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=69.07 E-value=87 Score=31.29 Aligned_cols=135 Identities=15% Similarity=0.212 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC-chHHH-HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITADF-DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~di-~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
.+.+++.+.++++.+.|.+.|.+--|-+ +..|+ +.++.+++.+.-..+.+..||..-. +.++.|.+.++. ++
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~----~~~~~L~~aGl~--~v 118 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA----RFAAELADAGLK--RL 118 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHH----HHHHHHHHcCCC--eE
Confidence 3678888888888788988888866632 33343 4566666643212688999987643 355666666653 44
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH----HHHHHcCCccEEEecCCcc-h--HHHHHHHHHHHHHc
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV----QKVMQENLASVVNIKLAKF-G--VLGTLQIIKATRKS 353 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~-G--i~~~~~~~~~A~~~ 353 (438)
-=.+..-+.+.+.+++. . .+.+.+ +.+.+.+ ..-+.+....+ | ..+..+++++|.+.
T Consensus 119 ~ISlDs~~~e~~~~i~~-----~----------g~~~~vl~~i~~~~~~G-i~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 119 NISLDTLRPELFAALTR-----N----------GRLERVIAGIDAAKAAG-FERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred EEEeccCCHHHhhhhcC-----C----------CCHHHHHHHHHHHHHcC-CCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 33444434445555431 1 112222 3333332 21122221111 4 56788889999999
Q ss_pred CCeEEE
Q 013681 354 GLHLMI 359 (438)
Q Consensus 354 gi~~~~ 359 (438)
|+.+..
T Consensus 183 gi~~~~ 188 (329)
T PRK13361 183 GLDIAF 188 (329)
T ss_pred CCeEEE
Confidence 987743
No 234
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.99 E-value=1.2e+02 Score=29.51 Aligned_cols=160 Identities=14% Similarity=0.211 Sum_probs=84.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------------CchHHHHHHHHHHhhCCC--cE
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------------NITADFDVLQAIHAVHPH--CS 249 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~~di~~l~aiR~~~~~--~~ 249 (438)
+-.|.+.+.-+.+...+.+..+.+.|-..+-+-+-- .+++-++.++++|+..++ +-
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 334666676678888888888888898888877631 223456677888854444 34
Q ss_pred EEEeCCCCC--CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC-eEEEcCCCCCHHHHHHHHHcC
Q 013681 250 FILDANEGY--TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI-SVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 250 L~vDAN~~~--s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i-PIa~dEsl~~~~d~~~ll~~~ 326 (438)
+|.-.|--| ..+ +|++.+++.++.-.-| =-++.++.+.+.+.++ +.++ +|.+-=.-.+.+.++.+. ..
T Consensus 94 lm~Y~N~i~~~G~e---~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~----~~gl~~I~lvap~t~~eri~~i~-~~ 164 (258)
T PRK13111 94 LMTYYNPIFQYGVE---RFAADAAEAGVDGLII-PDLPPEEAEELRAAAK----KHGLDLIFLVAPTTTDERLKKIA-SH 164 (258)
T ss_pred EEecccHHhhcCHH---HHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHHHHH-Hh
Confidence 666667544 344 4666666665431112 2233334444444443 3443 232111112233344333 33
Q ss_pred CccEEEecCCcchHHH--------HHHHHHHHHHc-CCeEEEccCC
Q 013681 327 LASVVNIKLAKFGVLG--------TLQIIKATRKS-GLHLMIDGMI 363 (438)
Q Consensus 327 a~d~i~lk~~~~Gi~~--------~~~~~~~A~~~-gi~~~~~s~~ 363 (438)
+.++|-. ++..|.|+ ..+.++..+++ +++++++.-.
T Consensus 165 s~gfIY~-vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI 209 (258)
T PRK13111 165 ASGFVYY-VSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGI 209 (258)
T ss_pred CCCcEEE-EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEccc
Confidence 5555433 23333222 34455555554 8888887654
No 235
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.95 E-value=1e+02 Score=28.93 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
-..++++..+.++.+.+.|++++-+-.-. ..-.+.++.+|+.+|++ .|=|..-.+.+++.... +.|. .|+
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEitl~~--~~~~~~I~~l~~~~p~~--~IGAGTVl~~~~a~~a~----~aGA--~Fi 91 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEVTLRT--PAALEAIRLIAKEVPEA--LIGAGTVLNPEQLAQAI----EAGA--QFI 91 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHHCCCC--EEEEeeccCHHHHHHHH----HcCC--CEE
Confidence 34688999999999999999999988644 35667788888888874 44455566666654443 3454 377
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHcCCeEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
=-|.-.. +..+.|. +.++|..-| +.++.++.++++.+ ++++-+-|.- .| +.-.+.+...- -+++++
T Consensus 92 vsP~~~~---~vi~~a~----~~~i~~iPG--~~TptEi~~a~~~G-a~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~ 159 (212)
T PRK05718 92 VSPGLTP---PLLKAAQ----EGPIPLIPG--VSTPSELMLGMELG-LRTFKFFPAEASGGVKMLKALAGPF--PDVRFC 159 (212)
T ss_pred ECCCCCH---HHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEEccchhccCHHHHHHHhccC--CCCeEE
Confidence 7776532 3444453 478888754 56888888888876 6888887755 34 54444443332 368888
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
+++-.
T Consensus 160 ptGGV 164 (212)
T PRK05718 160 PTGGI 164 (212)
T ss_pred EeCCC
Confidence 87654
No 236
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=68.92 E-value=79 Score=34.50 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=44.1
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE--eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFIL--DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v--DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~ 287 (438)
.++...+.|.+.|.+-... +.+.=...++.+++.|-.+...+ ..+-.++++..+++++++.+.+.+...|=+-.---
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~ 175 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGIL 175 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 3444455566555554443 22222223344444443333222 12222445555566666665555433444444333
Q ss_pred ChhhHHHHHHhhccccCCeEEE
Q 013681 288 DWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
......+|.+.+|+..++||..
T Consensus 176 ~P~~v~~lv~~lk~~~~~pi~~ 197 (582)
T TIGR01108 176 TPKAAYELVSALKKRFGLPVHL 197 (582)
T ss_pred CHHHHHHHHHHHHHhCCCceEE
Confidence 3444444444444444555543
No 237
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.46 E-value=1e+02 Score=31.92 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC---------------CchHHHHHHHHHHhhCCCcEEEEeCCCC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR---------------NITADFDVLQAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~---------------d~~~di~~l~aiR~~~~~~~L~vDAN~~ 257 (438)
.|+..++... +++++.+.++.+.+.|+..|-+.++- +.+.-.+.++++++.. ++.+.|=-.-
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p- 177 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP- 177 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC-
Confidence 3444565555 78888888888877899999988762 2223344566666632 2223322221
Q ss_pred CCHHHHHHHHHHhhhCCCCCc------------eEe----cC-CCC----C----------ChhhHHHHHHhhcccc---
Q 013681 258 YTSEEAVEVLGKLNDMGVIPV------------LFE----QP-VHR----D----------DWSGLHDVSNFARDTY--- 303 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~------------~iE----qP-l~~----~----------d~~~~a~L~~~~r~~~--- 303 (438)
+..+..++++.+++.++.-. .+| .| +.. + .|+..+++.+ .+
T Consensus 178 -~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~----~~~~~ 252 (420)
T PRK08318 178 -NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIAR----DPETR 252 (420)
T ss_pred -CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHh----ccccC
Confidence 22234566666666553200 122 23 211 0 1334444443 34
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc--hHHH----HHHHHHHHHHcCC
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--GVLG----TLQIIKATRKSGL 355 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~--Gi~~----~~~~~~~A~~~gi 355 (438)
++||.+-=-+.+.+|+.+.+..+ ++.||+=-..+ |..- ..++.++.+++|+
T Consensus 253 ~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 253 GLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 79999888899999999999865 77788754432 4222 2223345556663
No 238
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=67.88 E-value=67 Score=35.15 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=64.8
Q ss_pred HHHH-HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCC--cE--EEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 205 PAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPH--CS--FILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 205 ~~~~-~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~--~~--L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
++++ ...++...+.|.+.|.+--.- |++.=...++++++.|-. .. ++. +-.++++..+++++.+.+.+.+..
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~--sp~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT--SPVHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC--CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444 445666677888876665443 344434456777776532 22 333 346778888888888888777655
Q ss_pred eEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 279 ~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
.|-+..---......+|.+.+++..++||..-
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H 203 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLH 203 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEE
Confidence 67777655556666666666666667777653
No 239
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=67.45 E-value=62 Score=31.91 Aligned_cols=133 Identities=16% Similarity=0.230 Sum_probs=82.6
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-h---CC--CcEEE----------EeC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-V---HP--HCSFI----------LDA 254 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~---~~--~~~L~----------vDA 254 (438)
++|+..-+... +.+. +.+.++.||+.+=+.-.. ++++++++.+.+.+ + +- +.+|- .+.
T Consensus 74 ~VPValHLDH~~~~e~----i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~ 149 (284)
T PRK12857 74 SVPVALHLDHGTDFEQ----VMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDE 149 (284)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCccc
Confidence 34544444432 4443 445567899999998765 78999998887766 2 21 22221 111
Q ss_pred CC-CC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHH
Q 013681 255 NE-GY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQ 324 (438)
Q Consensus 255 N~-~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~ 324 (438)
+. .| +|++|.+|.++..- +| .|=.|-.+| .=|++-++++++ .+++|+.+- =|=.+.++++++++
T Consensus 150 ~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~ 223 (284)
T PRK12857 150 REAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEP--KLDFDRLAKIKE----LVNIPIVLHGSSGVPDEAIRKAIS 223 (284)
T ss_pred chhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHH
Confidence 21 26 49999999987531 11 121133444 457888888876 578898665 47777788999998
Q ss_pred cCCccEEEecCC
Q 013681 325 ENLASVVNIKLA 336 (438)
Q Consensus 325 ~~a~d~i~lk~~ 336 (438)
.+ +.=||+.-.
T Consensus 224 ~G-i~KiNi~T~ 234 (284)
T PRK12857 224 LG-VRKVNIDTN 234 (284)
T ss_pred cC-CeEEEeCcH
Confidence 76 545677654
No 240
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.28 E-value=1.5e+02 Score=30.03 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEe
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFE 281 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iE 281 (438)
.|.+...+|+.++.+.|-..+.+-+-. .++.+.+..|++.. .+.|..|-+-- ...|+.-++. ++.+.+.
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~--~~~A~al~~I~~~~-~iPlVADIHFd--~~lAl~a~~~g~dkiRIN----- 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPD--RESAAAFEAIKEGT-NVPLVADIHFD--YRLAALAMAKGVAKVRIN----- 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHhCC-CCCEEEeeCCC--cHHHHHHHHhccCeEEEC-----
Confidence 466777899999999999999888754 57777888888843 48888888644 4445544444 4443332
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEc
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
|=.-++.+..+++.+.++ ..++||=.|=..-|++ +++++... +++--+ +..+++.++++++.|..=.+=
T Consensus 101 -PGNig~~e~v~~vv~~ak-~~~ipIRIGVN~GSL~--~~~~~kyg------~~t~eamveSAl~~v~~le~~~F~divi 170 (346)
T TIGR00612 101 -PGNIGFRERVRDVVEKAR-DHGKAMRIGVNHGSLE--RRLLEKYG------DATAEAMVQSALEEAAILEKLGFRNVVL 170 (346)
T ss_pred -CCCCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCc--HHHHHHcC------CCCHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 221122334444443333 4677877776666665 46666432 134447 778999999999998775544
Q ss_pred cCCchhH
Q 013681 361 GMIETRL 367 (438)
Q Consensus 361 s~~es~i 367 (438)
|+=.|++
T Consensus 171 S~KsSdv 177 (346)
T TIGR00612 171 SMKASDV 177 (346)
T ss_pred EEEcCCH
Confidence 4333443
No 241
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.24 E-value=76 Score=30.51 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=34.2
Q ss_pred HHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 238 LQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 238 l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
++.+|+.|..+.+..---..++++...++++++.+++.....|=+.+-.-..+.++++...+++..++||.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~ 186 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLE 186 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 33444444433333333344566666666666666654422444444333444555544444444445543
No 242
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.78 E-value=91 Score=30.27 Aligned_cols=99 Identities=12% Similarity=0.313 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEec--CCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
-.|+.++.+++++.|.+.|+. .||= |-.. .+.+..+.+++. .....+.. =...+..+++++++.+ ++.+.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~--~IEvG~P~~~~~~~~~~~~l~~~---~~~~~v~~-~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVD--YIELTSPAASPQSRADCEAIAKL---GLKAKILT-HIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHhC---CCCCcEEE-EecCCHHHHHHHHHcC-cCEEE
Confidence 358999999999999999985 8998 4432 223333444321 11122321 1356788899998874 66666
Q ss_pred ecCC--------cch------HHHHHHHHHHHHHcCCeEEEcc
Q 013681 333 IKLA--------KFG------VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 333 lk~~--------~~G------i~~~~~~~~~A~~~gi~~~~~s 361 (438)
+=.+ +.| +..+.+++++|++.|+.+.++-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5221 112 4456778899999999988764
No 243
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=66.67 E-value=1.1e+02 Score=31.41 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEec--CCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.|+.++-+++++.|.+.|+. .||= |-. +++++..+.+.+ ......+..- .-....+++.+++.+ ++.+.+
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~g-~~~i~i 94 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDCG-VDAVHI 94 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhCC-cCEEEE
Confidence 58999999999999999985 8996 432 234456666653 1223333332 223477888888875 565554
Q ss_pred --cCCc-----------ch-HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 334 --KLAK-----------FG-VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 334 --k~~~-----------~G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
..+. -. +....+.++.|++.|+.+.++...
T Consensus 95 ~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 95 FIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 2221 12 455677999999999999887643
No 244
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.27 E-value=83 Score=30.55 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
+++...++++++.+.+..-..|=+-+-.-..+...++.+.+++..++||
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 139 DLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4566666666666665432244444444444444444444443444444
No 245
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=66.20 E-value=77 Score=32.69 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCC--------C------CChhhHHHHHHhhc
Q 013681 235 FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH--------R------DDWSGLHDVSNFAR 300 (438)
Q Consensus 235 i~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~--------~------~d~~~~a~L~~~~r 300 (438)
++.++.+++.+|+..+.+---+..+.++-.++++++++.+.. .||==+. . .+.+..+++++.++
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD--~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk 178 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVD--ALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWIN 178 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHH
Confidence 334444555566667777776667777777777777776643 6773331 1 24555666666555
Q ss_pred cccCCeEEE
Q 013681 301 DTYGISVVA 309 (438)
Q Consensus 301 ~~~~iPIa~ 309 (438)
+.+.+||..
T Consensus 179 ~~~~iPv~v 187 (385)
T PLN02495 179 AKATVPVWA 187 (385)
T ss_pred HhhcCceEE
Confidence 555666644
No 246
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=66.17 E-value=15 Score=36.17 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=44.4
Q ss_pred ccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++- ....+.+.+++.++.+ ++.|.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 71 EASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 578998875 3566788899999985 899999999872 7889999999999998874
No 247
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=65.33 E-value=2.1e+02 Score=31.22 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEe---CCC-CCC--HHHHH-HHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILD---ANE-GYT--SEEAV-EVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vD---AN~-~~s--~~~A~-~~l 267 (438)
.+.+++.+.++.+.+.||..|-+--|..+ +++.++++++++..++..+..= .|. +|. +++++ +++
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 36788888999999999999999644322 4578899999997787776533 232 342 45543 467
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc--CCC---CCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ESC---RSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d--Esl---~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
++..+.++....|=.++. |.+.+....+.+++ .+.-+... .+. ++.+.+ +++.+.+ +|.|.++=+.
T Consensus 98 ~~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~- 172 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALN--DPRNLQAAIQAAKK-HGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMA- 172 (582)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHHH-cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 776776765334555554 34444443333332 34444322 221 344443 4555554 7888887665
Q ss_pred h---HHHHHHHHHHH-HHcCCeEEEccCCchhHHHHHH
Q 013681 339 G---VLGTLQIIKAT-RKSGLHLMIDGMIETRLATGFA 372 (438)
Q Consensus 339 G---i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~a~ 372 (438)
| ...+.+++... ++.++++-+|+-..++++.+.+
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~ 210 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMAL 210 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHH
Confidence 4 34455555554 4458888888876666665543
No 248
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=65.24 E-value=1.4e+02 Score=29.18 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+.+. ..++.+.+=.. . +.+++++.++..++.+..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 67788889999999999888765432 234444556666663 45677777664 4 899999999999988765
Q ss_pred CceEecCCCC-CChh----hHHHHHHhhccccCCeEEEcC---CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 277 PVLFEQPVHR-DDWS----GLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 277 ~~~iEqPl~~-~d~~----~~a~L~~~~r~~~~iPIa~dE---sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
-..+=-|... .+.+ -++.+++ .+++||.+=. ...+++.+.++.+ ..+.++-+|-+ .| +....+++
T Consensus 97 ~v~~~pP~y~~~~~~~i~~~f~~v~~----~~~~pi~lYn~~g~~l~~~~l~~L~~-~~pnivgiKds-~~d~~~~~~~~ 170 (289)
T cd00951 97 GILLLPPYLTEAPQEGLYAHVEAVCK----STDLGVIVYNRANAVLTADSLARLAE-RCPNLVGFKDG-VGDIELMRRIV 170 (289)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCEEEEEeC-CCCHHHHHHHH
Confidence 2244444321 1223 3444553 5789986643 3356666677764 24678888876 36 76666654
Q ss_pred HHHHHcCCeEEEcc
Q 013681 348 KATRKSGLHLMIDG 361 (438)
Q Consensus 348 ~~A~~~gi~~~~~s 361 (438)
+.. ..+..+..+.
T Consensus 171 ~~~-~~~~~v~~G~ 183 (289)
T cd00951 171 AKL-GDRLLYLGGL 183 (289)
T ss_pred Hhc-CCCeEEEeCC
Confidence 332 2356666654
No 249
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=65.19 E-value=68 Score=31.69 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=75.4
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhhh
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLND 272 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~~ 272 (438)
+.+.++.||+.+=+.-.. ++++++++.+.+.+. +- +.+|- | +.+ .-| +|++|.+|.++..-
T Consensus 90 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~Tgv 169 (286)
T PRK12738 90 IRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGV 169 (286)
T ss_pred HHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCC
Confidence 344568899999998765 789999988877662 21 22221 1 111 116 59999999987431
Q ss_pred ------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 273 ------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 273 ------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+| .|=.|-..| .=|++-++++++ .+++|+++- =|=...++++++++.+ +.=||+.-..
T Consensus 170 D~LAvaiGt~HG~Y~~~p--~Ldfd~l~~I~~----~~~vPLVLHGgSG~~~e~~~kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 170 DSLAVAIGTAHGLYSKTP--KIDFQRLAEIRE----VVDVPLVLHGASDVPDEFVRRTIELG-VTKVNVATEL 235 (286)
T ss_pred CEEEeccCcccCCCCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 11 110122333 347888888876 578998765 4667777889888876 4456666443
No 250
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.47 E-value=1.6e+02 Score=31.62 Aligned_cols=109 Identities=18% Similarity=0.345 Sum_probs=62.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC---ChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHH
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~---d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+|+|=|--+-+ .++.+.+++|-+.+..+..|--+ +-+ .|+..+++++ .. +++|..+ .+.+.++.+++++
T Consensus 236 ~l~vgaavg~~-~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~----~~p~~~vi~g-~v~t~e~a~~a~~ 308 (505)
T PLN02274 236 KLLVGAAIGTR-ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKK----TYPELDVIGG-NVVTMYQAQNLIQ 308 (505)
T ss_pred CEEEEEEEcCC-ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHH----hCCCCcEEEe-cCCCHHHHHHHHH
Confidence 44444432222 34466666766655543233322 111 1344555543 44 4787655 3578899999998
Q ss_pred cCCccEEEecC-----------Ccch---HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 325 ENLASVVNIKL-----------AKFG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 325 ~~a~d~i~lk~-----------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
.+ +|+|.+-. +.+| ++....+.+++++.+++++..+-+-+
T Consensus 309 aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~ 362 (505)
T PLN02274 309 AG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISN 362 (505)
T ss_pred cC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCC
Confidence 75 88876521 1122 34556678888889999987665533
No 251
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.41 E-value=1.7e+02 Score=29.70 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
.++++-.+.+++.....+..+-+-+|.. ++|.++++++-+..+++ -|.||.-.+.+.. .+++++.+++.-
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~-~i~~ik~ik~~~------- 149 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEH-FVQFVAKAREAW------- 149 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHH-HHHHHHHHHHhC-------
Confidence 3677766667666545555666677753 58899999999864333 3778999998844 356655555420
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec-----------CCcch---HHHHHHHH
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK-----------LAKFG---VLGTLQII 347 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk-----------~~~~G---i~~~~~~~ 347 (438)
-.++|.+| .+.+.+..+.|++.+ +|++.+- .+-+| ++...+.+
T Consensus 150 ---------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 150 ---------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred ---------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 12455555 456677888888875 7776421 12234 67788899
Q ss_pred HHHHHcCCeEEEccC
Q 013681 348 KATRKSGLHLMIDGM 362 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~ 362 (438)
+.|+++|++++-.+-
T Consensus 207 ~~a~~~gvpiIADGG 221 (346)
T PRK05096 207 DAAHGLGGQIVSDGG 221 (346)
T ss_pred HHHHHcCCCEEecCC
Confidence 999999999886553
No 252
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=64.40 E-value=27 Score=35.08 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=49.8
Q ss_pred eeeeee--eCCCCHH-HHHHHHHHHhhcCCcEEEEecCC-----CchHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHH
Q 013681 194 LSTAIT--IPAVSPA-EASELASKYCKLGFSTLKLNVGR-----NITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAV 264 (438)
Q Consensus 194 ip~~~~--i~~~~~~-~~~~~~~~~~~~Gf~~iKlKvG~-----d~~~di~~l~aiR~~~~~~~L~vDAN~~-~s~~~A~ 264 (438)
+|+..- ++.++.+ ...+.++...+.|-..+-++.-. .-..|.+.+..+++..++ +-|-+||. +|+++|.
T Consensus 137 iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~ 214 (323)
T COG0042 137 IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAK 214 (323)
T ss_pred CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHH
Confidence 554433 3333333 12344455556778888777632 223688889999987766 88999998 7999999
Q ss_pred HHHHHh
Q 013681 265 EVLGKL 270 (438)
Q Consensus 265 ~~l~~L 270 (438)
+.++.-
T Consensus 215 ~~l~~t 220 (323)
T COG0042 215 EMLEYT 220 (323)
T ss_pred HHHHhh
Confidence 998873
No 253
>PRK12928 lipoyl synthase; Provisional
Probab=63.99 E-value=1.5e+02 Score=29.15 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC--Cc-----hHHHHHHHHHHhhCCCcEEEE-eC--CCCCCHHHHHHHHHHh--
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR--NI-----TADFDVLQAIHAVHPHCSFIL-DA--NEGYTSEEAVEVLGKL-- 270 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~-----~~di~~l~aiR~~~~~~~L~v-DA--N~~~s~~~A~~~l~~L-- 270 (438)
.+++++.+.++.+.+.|++-+-+--|. |. +.=.+.+++|++..|++.+.+ +. .+. ..++++.+..-
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~--~~e~L~~l~~Ag~ 164 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGG--QRERLATVLAAKP 164 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccC--CHHHHHHHHHcCc
Confidence 478999999999989999988875542 21 233567889988888877664 22 221 23334433322
Q ss_pred hhCCCCCceEecCC--------CCCChhhHHHHHHhhcc-------ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe--
Q 013681 271 NDMGVIPVLFEQPV--------HRDDWSGLHDVSNFARD-------TYGISVVADESCRSLNDVQKVMQENLASVVNI-- 333 (438)
Q Consensus 271 ~~~~l~~~~iEqPl--------~~~d~~~~a~L~~~~r~-------~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l-- 333 (438)
+-++. .+| +. +..+++.+.++.+.+++ .+++=+..+|+.....+..+.++...+|++.+
T Consensus 165 ~i~~h---nlE-t~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 165 DVFNH---NLE-TVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred hhhcc---cCc-CcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 11221 233 22 11234444333332222 12344455676666666666666667777765
Q ss_pred --cCCc----c-h---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 334 --KLAK----F-G---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 334 --k~~~----~-G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
.|++ + . ..+..++.+.|.+.|...+.++.+
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
Confidence 2222 1 3 234677888888888887766543
No 254
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=63.36 E-value=54 Score=33.43 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC---CchHHHHHHHHHHhh--CCCcEEEEeCCCC------CCHHHHHHHHHHhhh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR---NITADFDVLQAIHAV--HPHCSFILDANEG------YTSEEAVEVLGKLND 272 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~---d~~~di~~l~aiR~~--~~~~~L~vDAN~~------~s~~~A~~~l~~L~~ 272 (438)
+.++..+.++++.+.||+.+=.-+.. +.+.-.++++.+-+. --++++++|.|.. ++.++ ++.++.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~d-l~~~~~--- 87 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDD-LSFFKE--- 87 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTB-THHHHH---
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHH-HHHHHH---
Confidence 57778888999999999887666543 233445556555442 3589999999975 34333 223333
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC-------ccEEEecCCcch--HHHH
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL-------ASVVNIKLAKFG--VLGT 343 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a-------~d~i~lk~~~~G--i~~~ 343 (438)
+|+...=+-+-+. .+..++|++ + ++.|.+.-|..+..++.++++.++ ++=+=|++ ..| ..-.
T Consensus 88 lGi~~lRlD~Gf~---~~~ia~ls~----n-g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~-~TGLs~~~f 158 (357)
T PF05913_consen 88 LGIDGLRLDYGFS---GEEIAKLSK----N-GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRP-YTGLSEEFF 158 (357)
T ss_dssp HT-SEEEESSS-S---CHHHHHHTT----T--SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-ST-T-SB-HHHH
T ss_pred cCCCEEEECCCCC---HHHHHHHHh----C-CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCC-CCCCCHHHH
Confidence 3332112444443 467777764 3 899999999988888888877653 11111333 236 5557
Q ss_pred HHHHHHHHHcCCeEE
Q 013681 344 LQIIKATRKSGLHLM 358 (438)
Q Consensus 344 ~~~~~~A~~~gi~~~ 358 (438)
.+.-++-+++|+++.
T Consensus 159 ~~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 159 IEKNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 888888899999975
No 255
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=63.25 E-value=27 Score=36.73 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=65.5
Q ss_pred HHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 260 SEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 260 ~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
..+|+..+-+ +.+-|-. .++|+|.-..-...+..+ ...-+||-.||+=.+++.+++.++...+.++-+-|+..
T Consensus 164 ~q~al~l~~~~l~~pGd~-v~vE~PtY~~~~~~~~~~-----g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLLLRLLLDPGDT-VLVEDPTYPGALQALEAL-----GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHHHHHhCCCCCE-EEEcCCCcHHHHHHHHHc-----CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence 4677776644 4444433 599999975433222222 12346777799999999999999876677777666553
Q ss_pred ---h--H--HHHHHHHHHHHHcCCeEEEcc
Q 013681 339 ---G--V--LGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 339 ---G--i--~~~~~~~~~A~~~gi~~~~~s 361 (438)
| + ..-++++++|+++++.+.=-.
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 6 3 346789999999999887544
No 256
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=63.18 E-value=28 Score=35.32 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=40.5
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc--------h-HH-HHHHHHHHHHHcCCeEEEccC
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF--------G-VL-GTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~--------G-i~-~~~~~~~~A~~~gi~~~~~s~ 362 (438)
.+++|+.+|=.+. ..-....++. +|-+.+.|..+ | +. ...++++.|+++|+++-++..
T Consensus 72 g~~iPlVADIHFd-~~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN 139 (359)
T PF04551_consen 72 GSPIPLVADIHFD-YRLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVN 139 (359)
T ss_dssp T-SS-EEEEESTT-CHHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CCCCCeeeecCCC-HHHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecc
Confidence 3889999997654 3444555554 99999999999 6 44 588999999999999988754
No 257
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=63.12 E-value=77 Score=31.33 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=82.5
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DA 254 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DA 254 (438)
++|+..-+... +.+. +.+.++.||+.+=+.... ++++++++-+.+.+. +- +.+|- | +.
T Consensus 77 ~VPV~lHLDHg~~~e~----i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 152 (288)
T TIGR00167 77 GVPVALHLDHGASEED----CAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVAD 152 (288)
T ss_pred CCcEEEECCCCCCHHH----HHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccc
Confidence 45554444433 4443 344568899999998765 789999988888762 21 22221 1 11
Q ss_pred C-CCC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHH
Q 013681 255 N-EGY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQ 324 (438)
Q Consensus 255 N-~~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~ 324 (438)
+ ..| +|++|.+|.++..- +| .|=.|-..|-. -|++-++++++ .+++|+++-= |=.+.++++++++
T Consensus 153 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~-Ld~~~L~~I~~----~v~vPLVlHGgSG~~~e~~~~ai~ 227 (288)
T TIGR00167 153 ESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKG-LDFERLEEIQK----YVNLPLVLHGGSGIPDEEIKKAIS 227 (288)
T ss_pred ccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCc-cCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHH
Confidence 1 226 49999999987431 11 12113344431 37888888875 5789987654 6667778999998
Q ss_pred cCCccEEEecCC
Q 013681 325 ENLASVVNIKLA 336 (438)
Q Consensus 325 ~~a~d~i~lk~~ 336 (438)
.+ +.=||+.-.
T Consensus 228 ~G-i~KiNi~T~ 238 (288)
T TIGR00167 228 LG-VVKVNIDTE 238 (288)
T ss_pred cC-CeEEEcChH
Confidence 76 444666543
No 258
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=63.04 E-value=71 Score=29.94 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=71.8
Q ss_pred eeeeeCCCCHHHHHHHHHHHhhc-CCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 013681 196 TAITIPAVSPAEASELASKYCKL-GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (438)
+...+...+.++|.++++.+.+. |-..+|+-.-. .-++.++.+++.+ +.+=+-.-||++||...+++-.+|
T Consensus 54 v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~g----i~v~~T~V~s~~Qa~~Aa~AGA~y- 125 (211)
T cd00956 54 VSAQVVSTDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEG----IKTNVTAIFSAAQALLAAKAGATY- 125 (211)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcC----CceeeEEecCHHHHHHHHHcCCCE-
Confidence 33444457899999999998765 55555554432 3344455554432 455555679999999888876655
Q ss_pred CCCc--eEecCCCCCChhhHHHHHHhhccccCCe---EEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 275 VIPV--LFEQPVHRDDWSGLHDVSNFARDTYGIS---VVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 275 l~~~--~iEqPl~~~d~~~~a~L~~~~r~~~~iP---Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.++ .+++-- .+-++.++++.+.++ +.+++ ++. |+.++.++.+++..| +|++-+-+.
T Consensus 126 vsP~vgR~~~~g-~dg~~~i~~i~~~~~-~~~~~tkil~A--s~r~~~ei~~a~~~G-ad~vTv~~~ 187 (211)
T cd00956 126 VSPFVGRIDDLG-GDGMELIREIRTIFD-NYGFDTKILAA--SIRNPQHVIEAALAG-ADAITLPPD 187 (211)
T ss_pred EEEecChHhhcC-CCHHHHHHHHHHHHH-HcCCCceEEec--ccCCHHHHHHHHHcC-CCEEEeCHH
Confidence 3210 111111 011222223322221 34555 444 688888888877765 777766543
No 259
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=62.63 E-value=2.3e+02 Score=31.54 Aligned_cols=145 Identities=16% Similarity=0.236 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh----CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV----HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~----~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.|.+...+++.++.+.|-..+.+-+-. .+|.+.++.|++. +-++.|..|-+ |++.-|++.++.++...|.+=
T Consensus 107 ~D~eatv~Qi~~l~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~vdkiRINPG 182 (733)
T PLN02925 107 KDVEATVDQVMRIADKGADIVRITVQG--KKEADACFEIKNTLVQKGYNIPLVADIH--FAPSVALRVAECFDKIRVNPG 182 (733)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecC--CCHHHHHHHHHhcCCeEECCc
Confidence 366777899999999999999988854 5777778777773 56788999987 555556666665554322210
Q ss_pred eEecC-------C-CCCCh-hhHHH-------HHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 279 LFEQP-------V-HRDDW-SGLHD-------VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 279 ~iEqP-------l-~~~d~-~~~a~-------L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
=|=.+ . ..+++ +++.+ |.+.++ +.++||=.|=..-++. .++++... + +--| +.
T Consensus 183 N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak-~~~~~iRIGvN~GSLs--~ri~~~yG------d-tp~gmVe 252 (733)
T PLN02925 183 NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCK-KYGRAMRIGTNHGSLS--DRIMSYYG------D-SPRGMVE 252 (733)
T ss_pred ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC------C-ChHHHHH
Confidence 01011 0 00111 11111 222222 4567776666555554 33444321 1 2236 66
Q ss_pred HHHHHHHHHHHcCCeEEEcc
Q 013681 342 GTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s 361 (438)
.+++.+++|++.|..=.+=|
T Consensus 253 SAle~~~i~e~~~f~diviS 272 (733)
T PLN02925 253 SAFEFARICRKLDYHNFVFS 272 (733)
T ss_pred HHHHHHHHHHHCCCCcEEEE
Confidence 67777777777766533333
No 260
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.55 E-value=2.2e+02 Score=30.51 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccC--CeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~--iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
+++++.+.+++|-+.++. .||=+..++. .+..+++++ ..+ ++|.+| .+.+.++++.+++.+ +|+|.
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g~~~~~~~~i~~ir~----~~~~~~~V~aG-nV~t~e~a~~li~aG-Ad~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEGYSEWQKRTLDWIRE----KYGDSVKVGAG-NVVDREGFRYLAEAG-ADFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCcccccHHHHHHHHHHHH----hCCCCceEEec-cccCHHHHHHHHHcC-CCEEE
Confidence 446788899999888875 7887776665 455566654 443 677776 567789999999986 68875
Q ss_pred e----------c-CCcch---HHHHHHHHHHHHH----cC--CeEEEccCC
Q 013681 333 I----------K-LAKFG---VLGTLQIIKATRK----SG--LHLMIDGMI 363 (438)
Q Consensus 333 l----------k-~~~~G---i~~~~~~~~~A~~----~g--i~~~~~s~~ 363 (438)
+ . ..-+| ++...++++.+++ +| ++++..+-+
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGi 361 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGI 361 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCC
Confidence 5 1 22234 4444445444433 47 788876654
No 261
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=62.05 E-value=58 Score=31.74 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHhh-cCCcEEEEecCCCchHHHHHHHHHHhhC-C-----CcEEEEe-CCCCC-----C---HHHHHHH
Q 013681 203 VSPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVH-P-----HCSFILD-ANEGY-----T---SEEAVEV 266 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~-~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-----~~~L~vD-AN~~~-----s---~~~A~~~ 266 (438)
.++++..+.+.++.+ .|...+|+--| ++-.++++++++.+ | ++.=+-| ..++| + .+++++.
T Consensus 90 ~~~~~av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 90 ASPEQALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Confidence 356776666555555 89999999876 34457788888754 2 1111111 11222 2 4577888
Q ss_pred HHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 267 l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
++++++.+....++|-+ +. +..+++++ +.++|+.
T Consensus 167 a~a~~eAGA~~i~lE~v-~~---~~~~~i~~----~l~iP~i 200 (264)
T PRK00311 167 AKALEEAGAFALVLECV-PA---ELAKEITE----ALSIPTI 200 (264)
T ss_pred HHHHHHCCCCEEEEcCC-CH---HHHHHHHH----hCCCCEE
Confidence 88898888654577777 32 56777776 5788863
No 262
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=61.99 E-value=84 Score=30.84 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=81.1
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E----e----CC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D----AN 255 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v----D----AN 255 (438)
++|+..-+... +++.+ .+.++.||+.+=+.... ++++++++.+.+.+. +- +.+|- | | ..
T Consensus 69 ~VPV~lHLDH~~~~~~i----~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~ 144 (276)
T cd00947 69 SVPVALHLDHGSSFELI----KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE 144 (276)
T ss_pred CCCEEEECCCCCCHHHH----HHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence 34544444433 44444 34468999999998765 788999888777662 21 22221 1 0 01
Q ss_pred CCCC-HHHHHHHHHHhhh------CC-CCCceEe-cCCCCCChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHc
Q 013681 256 EGYT-SEEAVEVLGKLND------MG-VIPVLFE-QPVHRDDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQE 325 (438)
Q Consensus 256 ~~~s-~~~A~~~l~~L~~------~~-l~~~~iE-qPl~~~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~ 325 (438)
..|| |++|.+|.++..- +| .|=.|-. +| .-|++-++++++ .+++|+++- =|=.+.++++++++.
T Consensus 145 ~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p--~L~~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~ 218 (276)
T cd00947 145 GLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEP--KLDFDRLKEIAE----RVNVPLVLHGGSGIPDEQIRKAIKL 218 (276)
T ss_pred ccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHc
Confidence 1254 9999999998541 11 1211223 33 347888888876 578998765 476777789999887
Q ss_pred CCccEEEecC
Q 013681 326 NLASVVNIKL 335 (438)
Q Consensus 326 ~a~d~i~lk~ 335 (438)
+ +.=||+.-
T Consensus 219 G-i~KiNi~T 227 (276)
T cd00947 219 G-VCKININT 227 (276)
T ss_pred C-CeEEEeCh
Confidence 6 44466654
No 263
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=61.90 E-value=1.4e+02 Score=28.56 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh---hCCCcEEE--EeC----CCCCCHHHHHHHHHH-hh
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFI--LDA----NEGYTSEEAVEVLGK-LN 271 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~---~~~~~~L~--vDA----N~~~s~~~A~~~l~~-L~ 271 (438)
.+.++..+.++...+.|++.|-.--.- +-..+...=+++++ ..+++.|. +.. ...++++...+-+++ |+
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 367777888888899999988765421 11222223356666 22454443 311 233455555444333 33
Q ss_pred hCC---CCCceEecCCCCCC-----hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH--HHcCCccEEEecCCcchHH
Q 013681 272 DMG---VIPVLFEQPVHRDD-----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV--MQENLASVVNIKLAKFGVL 341 (438)
Q Consensus 272 ~~~---l~~~~iEqPl~~~d-----~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l--l~~~a~d~i~lk~~~~Gi~ 341 (438)
.++ +.++++-.|-.... |+.+.+|.+ .+.==..|=+-++.+.++.+ .....++++|+..+.+--.
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~ 168 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSEDALEEVWEALEELKK-----EGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRR 168 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHH-----TTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHB
T ss_pred cccccchhccccccccccccccchhhhhhhhccc-----ccccccccccccccccccccccccccccccccccccccccc
Confidence 333 22346666665443 444555543 34433444456777777777 3444678888877665112
Q ss_pred HHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 342 GTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
.-..+++.|+++||+++..+.+.+++
T Consensus 169 ~~~~l~~~~~~~gi~v~a~~~l~~G~ 194 (283)
T PF00248_consen 169 EEEGLLEFCREHGIGVIAYSPLAGGL 194 (283)
T ss_dssp GGHHHHHHHHHTT-EEEEESTTGGGC
T ss_pred ccccccccccccccccccccccccCc
Confidence 34567789999999999988876543
No 264
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=61.87 E-value=1.9e+02 Score=29.46 Aligned_cols=151 Identities=13% Similarity=0.192 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEe
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFE 281 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iE 281 (438)
.|.+...+|+.++.+.|-..+.+-+-. .++.+.++.|++..+ +.|..|-+ |++.-|++-++. .+...+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~--~~~a~al~~I~~~~~-iPlvADIH--Fd~~lAl~a~~~G~~~iRI------ 107 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPD--MEAAAALPEIKKQLP-VPLVADIH--FDYRLALAAAEAGADALRI------ 107 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCC--HHHHHhHHHHHHcCC-CCEEEecC--CCHHHHHHHHHhCCCEEEE------
Confidence 356777889999999999999888754 677888888888654 88888876 566666766666 444333
Q ss_pred cCCCCCCh----hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCe
Q 013681 282 QPVHRDDW----SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (438)
Q Consensus 282 qPl~~~d~----~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (438)
.|+++ +..+++.+.++ +.++||=.|=..-|++ +++++.. + +++--+ +..+++-++++++.|..
T Consensus 108 ---NPGNig~~~~~v~~vv~~ak-~~~ipIRIGvN~GSL~--~~~~~~y--g----~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 108 ---NPGNIGKRDERVREVVEAAK-DYGIPIRIGVNAGSLE--KDLLEKY--G----EPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred ---CCCCCCchHHHHHHHHHHHH-HCCCCEEEecCCccCh--HHHHHHc--C----CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 23333 23344443333 4678887776666665 4555532 2 244457 77899999999999876
Q ss_pred EEEccCCchhH--HHHHHHHHH
Q 013681 357 LMIDGMIETRL--ATGFALHLA 376 (438)
Q Consensus 357 ~~~~s~~es~i--g~~a~~hla 376 (438)
=.+=|+=.|++ ...|.-.++
T Consensus 176 ~iviS~KsS~v~~~i~ayrlla 197 (360)
T PRK00366 176 DIKISVKASDVQDLIAAYRLLA 197 (360)
T ss_pred cEEEEEEcCCHHHHHHHHHHHH
Confidence 44444333433 333444444
No 265
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=61.36 E-value=66 Score=32.30 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=45.1
Q ss_pred CCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 304 GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 304 ~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
++||++-= ...+.+.+++.++.+ ++-|.+|-|.. - +..+++++++|+++|+.+-
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 68877653 556788889999985 89999999987 2 8889999999999998874
No 266
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=60.50 E-value=2e+02 Score=29.28 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccCCeEEEcC-CCCC--HHHHHHHHHcC----------CccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRS--LNDVQKVMQEN----------LASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~--~~d~~~ll~~~----------a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+ .+.++++++.+ .++.|++|-|..- +.-+++++++|+.+|+.+-
T Consensus 90 ~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 90 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788888763 3445 45556666653 2889999999873 7789999999999999874
No 267
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=60.29 E-value=1.5e+02 Score=31.50 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecC--CCchH----HHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVG--RNITA----DFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG--~d~~~----di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
+++.+.+...++..++.|..+. .-+. .++.. =++.++.+.+.|.+.--..|..|..+|+++.+.++++++
T Consensus 128 lnd~~n~~~ai~~ak~~G~~~~-~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 128 LNDPRNIQQALRAVKKTGKEAQ-LCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred CCCHHHHHHHHHHHHHcCCEEE-EEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh
Confidence 3566666666677777776433 2222 12222 233444444556665556788888888887777777765
No 268
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=60.19 E-value=1.9e+02 Score=29.48 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCCCC---CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHR---DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~---~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.|+.++-+++++.|.+.|+. .||=-++. .+++..+.+.+. ..+..++.= .-....+++.+++.+ ++.+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~g-~~~i~i 91 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARCG-VDAVHI 91 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcCC-cCEEEE
Confidence 48999999999999999985 89994432 235666666541 123333321 124577888888765 455443
Q ss_pred cCCc--------ch------HHHHHHHHHHHHHcCCeEEEccCCc
Q 013681 334 KLAK--------FG------VLGTLQIIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 334 k~~~--------~G------i~~~~~~~~~A~~~gi~~~~~s~~e 364 (438)
=.+. .| +....+.+++|+++|+.+.++....
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~ 136 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA 136 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 2221 11 3445689999999999998876543
No 269
>PRK08185 hypothetical protein; Provisional
Probab=59.70 E-value=1.6e+02 Score=28.94 Aligned_cols=135 Identities=11% Similarity=0.179 Sum_probs=81.9
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEEE----------eC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFIL----------DA 254 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~v----------DA 254 (438)
++|+..-+... +.+. +++.++.||+.+-+.-.. ++++.+++-+.+.+. +- +.+|-. +.
T Consensus 68 ~vPV~lHLDHg~~~e~----i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~ 143 (283)
T PRK08185 68 PVPFVIHLDHGATIED----VMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGV 143 (283)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccc
Confidence 35554444433 4444 445568999999888764 788888888888752 21 122211 11
Q ss_pred CCC-C-CHHHHHHHHHHh--hhCCC-----CCceEecCC-CCCChhhHHHHHHhhccccCCeEEE-cCCCCCHHHHHHHH
Q 013681 255 NEG-Y-TSEEAVEVLGKL--NDMGV-----IPVLFEQPV-HRDDWSGLHDVSNFARDTYGISVVA-DESCRSLNDVQKVM 323 (438)
Q Consensus 255 N~~-~-s~~~A~~~l~~L--~~~~l-----~~~~iEqPl-~~~d~~~~a~L~~~~r~~~~iPIa~-dEsl~~~~d~~~ll 323 (438)
+.. + +++||.++.+.. +-+-+ |- -.+..+ +.-+++.++++++ .+++|+.+ |=|-...+++++++
T Consensus 144 ~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG-~y~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg~~~e~~~~ai 218 (283)
T PRK08185 144 SEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHG-IYPKDKKPELQMDLLKEINE----RVDIPLVLHGGSANPDAEIAESV 218 (283)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEeccCcccC-CcCCCCCCCcCHHHHHHHHH----hhCCCEEEECCCCCCHHHHHHHH
Confidence 111 3 699999999874 21111 21 123332 3346888888875 57899754 55767788899999
Q ss_pred HcCCccEEEecCCc
Q 013681 324 QENLASVVNIKLAK 337 (438)
Q Consensus 324 ~~~a~d~i~lk~~~ 337 (438)
+.+ +.=||+.-..
T Consensus 219 ~~G-I~KiNi~T~l 231 (283)
T PRK08185 219 QLG-VGKINISSDM 231 (283)
T ss_pred HCC-CeEEEeChHH
Confidence 876 5556776433
No 270
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.55 E-value=1.7e+02 Score=28.15 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec-----------CCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNV-----------GRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKv-----------G~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
+.++..+.++.+.+.|+..+-+-- +.....+.+.++.+++..++.++.+=.+.++... +.+++..+
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~---~~i~~a~~ 96 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTV---DDLKMAAD 96 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCH---HHHHHHHH
Confidence 677788889999999999887751 1222457778899988666666643333333322 22344444
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE---cCCCCCHHHHH----HHHHcCCccEEEecCCcch---HHH
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA---DESCRSLNDVQ----KVMQENLASVVNIKLAKFG---VLG 342 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~---dEsl~~~~d~~----~ll~~~a~d~i~lk~~~~G---i~~ 342 (438)
.++. ++-=.++..+.....+..+.+++ .+..+.. |-+-.+++.+. ++.+. .++.|.++=+. | ...
T Consensus 97 ~g~~--~iri~~~~s~~~~~~~~i~~ak~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~l~DT~-G~~~P~~ 171 (263)
T cd07943 97 LGVD--VVRVATHCTEADVSEQHIGAARK-LGMDVVGFLMMSHMASPEELAEQAKLMESY-GADCVYVTDSA-GAMLPDD 171 (263)
T ss_pred cCCC--EEEEEechhhHHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHHc-CCCEEEEcCCC-CCcCHHH
Confidence 4543 33323333344455555544433 3433311 22445666553 33333 47777775544 5 345
Q ss_pred HHHHHHHHHH-cCC-eEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 343 TLQIIKATRK-SGL-HLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 343 ~~~~~~~A~~-~gi-~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
..++++..++ .+. ++.+|+-...+ ++.+..+++--....++|
T Consensus 172 v~~lv~~l~~~~~~~~l~~H~Hn~~G--lA~AN~laAi~aGa~~vd 215 (263)
T cd07943 172 VRERVRALREALDPTPVGFHGHNNLG--LAVANSLAAVEAGATRID 215 (263)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCcc--hHHHHHHHHHHhCCCEEE
Confidence 6666666544 455 88888754443 443333433322345554
No 271
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.42 E-value=1.7e+02 Score=28.20 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+++. ..++.+.+=+.. -+.+++++.++..++.+..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHHHHHHHHcCCC
Confidence 67788888999999999887544321 234445567777774 456777766644 4678899999999988865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhccccCCeEEEc------CCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVAD------ESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~~iPIa~d------Esl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~ 344 (438)
-..+=-|.. ..+ ++-+.++++ .+++||.+= =...+++.+.++.+ .+.++-+|-+- | +....
T Consensus 95 ~v~v~pP~y~~~~~~~~~~~~~~ia~----~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~s~-~d~~~~~ 167 (281)
T cd00408 95 GVLVVPPYYNKPSQEGIVAHFKAVAD----ASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKDSS-GDLDRLT 167 (281)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHh----cCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHH
Confidence 334545542 111 223445553 578888642 13445667777775 57889999876 5 66666
Q ss_pred HHHHHHHHcCCeEEEcc
Q 013681 345 QIIKATRKSGLHLMIDG 361 (438)
Q Consensus 345 ~~~~~A~~~gi~~~~~s 361 (438)
++++.. ..++.++.+.
T Consensus 168 ~~~~~~-~~~~~v~~G~ 183 (281)
T cd00408 168 RLIALL-GPDFAVLSGD 183 (281)
T ss_pred HHHHhc-CCCeEEEEcc
Confidence 665443 2355555543
No 272
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=58.96 E-value=1.2e+02 Score=27.56 Aligned_cols=91 Identities=13% Similarity=0.223 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+++++.+.++.+.+.++. +||=.++..++ +.++.+++ ..+ +.|..+ ++.+.+++..+++.+ .+++..-
T Consensus 14 ~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~----~~~~~~iGag-~v~~~~~~~~a~~~G-a~~i~~p-- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRK----EFPEALIGAG-TVLTPEQADAAIAAG-AQFIVSP-- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcC-CCEEEcC--
Confidence 588999999999999985 99999875543 44555554 344 666555 567788898888875 6666532
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCC
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
|.. .++.+.++.+|++++++...
T Consensus 84 --~~~--~~~~~~~~~~~~~~i~gv~t 106 (190)
T cd00452 84 --GLD--PEVVKAANRAGIPLLPGVAT 106 (190)
T ss_pred --CCC--HHHHHHHHHcCCcEECCcCC
Confidence 211 46778888999999998763
No 273
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=58.62 E-value=1.1e+02 Score=30.50 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--Cc-----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--NI-----TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMG 274 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~-----~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~ 274 (438)
++++..+.++.+.+.|++.+=+--+. |+ +.=.+.+++|++..|++.+++=...-....++++.+... +-++
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~ 171 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYN 171 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhc
Confidence 67888889999999999998665431 22 233567788888778877776433111123444444332 1122
Q ss_pred CCCceEecC----CCCCChhhHHHHHHhhcc-------ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe----cCCcch
Q 013681 275 VIPVLFEQP----VHRDDWSGLHDVSNFARD-------TYGISVVADESCRSLNDVQKVMQENLASVVNI----KLAKFG 339 (438)
Q Consensus 275 l~~~~iEqP----l~~~d~~~~a~L~~~~r~-------~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l----k~~~~G 339 (438)
..++-.+.= -+..+++..-++-+.+++ .+++=+..||+.....+..+.++...++++.+ .|++-.
T Consensus 172 hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~ 251 (302)
T TIGR00510 172 HNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRH 251 (302)
T ss_pred ccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCC
Confidence 110111111 123344433333332322 25556677788777777677777766766553 332221
Q ss_pred --------HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 340 --------VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 340 --------i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
..+..++..+|.+.|...+.++.+
T Consensus 252 ~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 252 LPVKRYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred CccccCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 334677888899999988776654
No 274
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=58.09 E-value=2e+02 Score=28.40 Aligned_cols=150 Identities=15% Similarity=0.239 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeC-----CCCCC-HHHHH-HHHHHhhh--C
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDA-----NEGYT-SEEAV-EVLGKLND--M 273 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDA-----N~~~s-~~~A~-~~l~~L~~--~ 273 (438)
+.+...+.+...++.|||.|.--.--. .+-..=++|++.+ +.-+|-+.. |.+++ ...|+ +-+++|.- .
T Consensus 26 ~~~~~~~av~~Al~~Gyr~IDTA~~Yg--nE~~VG~aI~~s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyv 103 (280)
T COG0656 26 DDEWAVRAVRAALELGYRLIDTAEIYG--NEEEVGEAIKESGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLDYV 103 (280)
T ss_pred CchhHHHHHHHHHHhCcceEecHhHhc--CHHHHHHHHHhcCCCHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCCce
Confidence 333366777777899999987543111 2223335666632 322333332 23332 22222 23344432 2
Q ss_pred CCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC--ccEEEecCCcchHHHHHH
Q 013681 274 GVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL--ASVVNIKLAKFGVLGTLQ 345 (438)
Q Consensus 274 ~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a--~d~i~lk~~~~Gi~~~~~ 345 (438)
| .+.|=.|.+. +.|..|.++.+ .+.-=+.|=|-.+...++++++... +.+.|+...- ...-.+
T Consensus 104 D--LyLiHwP~~~~~~~~~etw~alE~l~~-----~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp--~~~q~e 174 (280)
T COG0656 104 D--LYLIHWPVPNKYVVIEETWKALEELVD-----EGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHP--YLRQPE 174 (280)
T ss_pred e--EEEECCCCCccCccHHHHHHHHHHHHh-----cCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEecc--CCCcHH
Confidence 3 3567788763 45666766653 3444455778899999999987643 5566665433 233344
Q ss_pred HHHHHHHcCCeEEEccCCc
Q 013681 346 IIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 346 ~~~~A~~~gi~~~~~s~~e 364 (438)
++..|+++||.+.-.|.++
T Consensus 175 l~~~~~~~gI~v~AysPL~ 193 (280)
T COG0656 175 LLPFCQRHGIAVEAYSPLA 193 (280)
T ss_pred HHHHHHHcCCEEEEECCcc
Confidence 9999999999999888775
No 275
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=57.76 E-value=1.3e+02 Score=27.38 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
+-+....+.....|.+.+=+ |...+.-.+..+.+++.+|++.+.-= ++-|++++.-+.++.+.+.+-.+.|+==-.|
T Consensus 35 dl~~~l~~~~~~~~~~vfll--G~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLY--GGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 44445555555677666554 55444444566778888999887653 8889888777788888877655567765555
Q ss_pred C
Q 013681 286 R 286 (438)
Q Consensus 286 ~ 286 (438)
.
T Consensus 112 k 112 (177)
T TIGR00696 112 K 112 (177)
T ss_pred H
Confidence 4
No 276
>PRK08508 biotin synthase; Provisional
Probab=57.47 E-value=1.3e+02 Score=29.38 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCeEEE
Q 013681 340 VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~ 359 (438)
...-++.++.|++.|+.+.-
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHHHHHHcCCeecc
Confidence 66777778888888888743
No 277
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=57.36 E-value=1.1e+02 Score=36.25 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=83.0
Q ss_pred HHHH-HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCC--CcEE--E---EeCCC-CCCHHHHHHHHHHhhhCC
Q 013681 205 PAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHP--HCSF--I---LDANE-GYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 205 ~~~~-~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~--~~~L--~---vDAN~-~~s~~~A~~~l~~L~~~~ 274 (438)
|+++ ...+++..+.|.+.|.+--.- |++.=...++++++.|. +..| . +|++. .|+.+..+++++.+.+.+
T Consensus 623 pd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 623 PDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 4555 555777788999998886543 44444445677777663 2223 2 45554 578888899999999988
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCC---CHHHHHHHHHcCCccEEEec
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR---SLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~---~~~d~~~ll~~~a~d~i~lk 334 (438)
.++..|-+..---......+|.+.+|+..++||..-=... .......+++.+ +|+|..-
T Consensus 703 ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaG-ad~vD~a 764 (1143)
T TIGR01235 703 AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAG-VDVVDVA 764 (1143)
T ss_pred CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhC-CCEEEec
Confidence 8766777777666667777777777767788886642211 122234555554 6664433
No 278
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=56.72 E-value=95 Score=29.05 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 207 EASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
++.+.++++.+.|++.|-+. |...++.+|+.+|++++.+|.+-.-.=.+++++++.+ |+.-..+-.=+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~-------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~---G~~~i~ls~EL-- 70 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS-------NPGLLELLKELGPDLKIIADYSLNVFNSESARFLKEL---GASRITLSPEL-- 70 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc-------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHc---CCCEEEECccC--
Confidence 45566777778888886654 7889999999999999999998765445556666655 22211222112
Q ss_pred CChhhHHHHHH
Q 013681 287 DDWSGLHDVSN 297 (438)
Q Consensus 287 ~d~~~~a~L~~ 297 (438)
++++++++++
T Consensus 71 -~~~ei~~i~~ 80 (233)
T PF01136_consen 71 -SLEEIKEIAE 80 (233)
T ss_pred -CHHHHHHHHH
Confidence 4566666665
No 279
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=56.43 E-value=2.8e+02 Score=29.70 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCC---chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 206 AEASELASKYCKLGFSTLKLNVGRN---ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~d---~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
+++.++++++.++|-..|=+-.+.. .++=...|+++++.. ++.+.||.- +++.+.+-++. |.. +|=
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~pISIDT~---~~~v~eaAL~a----GAd--iIN- 233 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSPVIADTP---TLDELYEALKA----GAS--GVI- 233 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCcEEEeCC---CHHHHHHHHHc----CCC--EEE-
Confidence 7788889999999999988877642 222233455555543 688999964 44554444443 321 121
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEE-c-CCCCCHHHH----HHHHHcCCccEEEecCCcc----hHHHHHHHHHHH-H
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVA-D-ESCRSLNDV----QKVMQENLASVVNIKLAKF----GVLGTLQIIKAT-R 351 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~-d-Esl~~~~d~----~~ll~~~a~d~i~lk~~~~----Gi~~~~~~~~~A-~ 351 (438)
-+..++.+.+..+++ ..+.|+.+ - +.......+ ..+.+.+ ++=+.+||..- |+...++-...+ +
T Consensus 234 sVs~~~~d~~~~l~a----~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~G-i~~IIlDPglg~~~~~l~~sL~~l~~~r~ 308 (499)
T TIGR00284 234 MPDVENAVELASEKK----LPEDAFVVVPGNQPTNYEELAKAVKKLRTSG-YSKVAADPSLSPPLLGLLESIIRFRRASR 308 (499)
T ss_pred ECCccchhHHHHHHH----HcCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CCcEEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 122234556766664 35555443 1 111112222 3344444 44588999762 233333333333 3
Q ss_pred HcCCeEEEcc
Q 013681 352 KSGLHLMIDG 361 (438)
Q Consensus 352 ~~gi~~~~~s 361 (438)
.+|.++++|-
T Consensus 309 ~~~~Pil~Gv 318 (499)
T TIGR00284 309 LLNVPLVFGA 318 (499)
T ss_pred hcCCcEEEee
Confidence 5788887764
No 280
>PRK15108 biotin synthase; Provisional
Probab=56.29 E-value=1.4e+02 Score=30.23 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCceE----ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLF----EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~i----EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+++|.++.++...+.++.-.-+ +.|.. .+++.+.++.+.++ +.++.+..-=...+.+.++++-+.+ +|.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik-~~~i~v~~s~G~ls~e~l~~LkeAG-ld~~n~ 152 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVK-AMGLETCMTLGTLSESQAQRLANAG-LDYYNH 152 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHH-hCCCEEEEeCCcCCHHHHHHHHHcC-CCEEee
Confidence 35566666666555544321111 23421 12444444444333 2444443322234555566655543 555444
Q ss_pred cC----------Ccch-HHHHHHHHHHHHHcCCeEEEccC
Q 013681 334 KL----------AKFG-VLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 334 k~----------~~~G-i~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
+. ...+ +...++.++.|++.|+.+..|..
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i 192 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGI 192 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEE
Confidence 21 1113 77889999999999998876543
No 281
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=56.28 E-value=2.3e+02 Score=28.66 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEec
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQ 282 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iEq 282 (438)
|.+...+++.++.+.|-..+.+-+-. .++.+.+..|++.. ++.|..|.+-- ..-|++..+. ++.+.|.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~--~e~A~A~~~Ik~~~-~vPLVaDiHf~--~rla~~~~~~g~~k~RIN------ 102 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPD--MEAAEALKEIKQRL-NVPLVADIHFD--YRLALEAAECGVDKVRIN------ 102 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhC-CCCEEEEeecc--HHHHHHhhhcCcceEEEC------
Confidence 66777889999999999999988864 67888889998855 78888888744 5556666655 5555443
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
|=.-+.-+..+.+.+.++ +.++||-.|=..-|++ +++++... .|+.=+ +..+++.++++++.|.+=.+=|
T Consensus 103 PGNig~~~~v~~vVe~Ak-~~g~piRIGVN~GSLe--k~~~~ky~------~pt~ealveSAl~~a~~~e~l~f~~i~iS 173 (361)
T COG0821 103 PGNIGFKDRVREVVEAAK-DKGIPIRIGVNAGSLE--KRLLEKYG------GPTPEALVESALEHAELLEELGFDDIKVS 173 (361)
T ss_pred CcccCcHHHHHHHHHHHH-HcCCCEEEecccCchh--HHHHHHhc------CCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 222122223444443332 4788888887666665 44555432 445558 7789999999999988754444
Q ss_pred CCchh--HHHHHHHHHHh
Q 013681 362 MIETR--LATGFALHLAA 377 (438)
Q Consensus 362 ~~es~--ig~~a~~hla~ 377 (438)
+=-|. ...+|.-.||.
T Consensus 174 ~K~Sdv~~~v~aYr~lA~ 191 (361)
T COG0821 174 VKASDVQLMVAAYRLLAK 191 (361)
T ss_pred EEcCCHHHHHHHHHHHHH
Confidence 33333 33344455554
No 282
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=56.18 E-value=89 Score=33.35 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEe--cCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFE--QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iE--qPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
|.+|+ |+.++-+++++.|.++++. .|| =|.. +.|++..+++++ ...-+-...=.-....++.+.++.
T Consensus 11 DG~Q~~g~~~s~e~K~~ia~~L~~~GV~--~IEvG~p~~s~~d~e~v~~i~~----~~~~~~i~al~r~~~~did~a~~a 84 (494)
T TIGR00973 11 DGEQSPGASLTVEEKLQIALALERLGVD--IIEAGFPVSSPGDFEAVQRIAR----TVKNPRVCGLARCVEKDIDAAAEA 84 (494)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHH----hCCCCEEEEEcCCCHHhHHHHHHh
Q ss_pred CC------ccEE----------EecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 326 NL------ASVV----------NIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 326 ~a------~d~i----------~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
.. ++++ +++-++-. +..+.+.+++|+++|..+..+....+..-......++
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~ 152 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIV 152 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHH
No 283
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=55.99 E-value=68 Score=31.04 Aligned_cols=76 Identities=8% Similarity=0.138 Sum_probs=59.1
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEc
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (438)
|+-.-.++++.+..+++ .+.+||..-.-++...++..+...+ +|++.+..+........++++.|+..|+.+++-
T Consensus 92 e~~~f~g~~~~l~~v~~----~v~iPvl~kdfi~~~~qi~~a~~~G-AD~VlLi~~~l~~~~l~~li~~a~~lGl~~lve 166 (260)
T PRK00278 92 DERFFQGSLEYLRAARA----AVSLPVLRKDFIIDPYQIYEARAAG-ADAILLIVAALDDEQLKELLDYAHSLGLDVLVE 166 (260)
T ss_pred ccccCCCCHHHHHHHHH----hcCCCEEeeeecCCHHHHHHHHHcC-CCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 55555667777777765 5789998877777888887777764 899999887766667888999999999998754
Q ss_pred c
Q 013681 361 G 361 (438)
Q Consensus 361 s 361 (438)
.
T Consensus 167 v 167 (260)
T PRK00278 167 V 167 (260)
T ss_pred e
Confidence 3
No 284
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=55.82 E-value=2.1e+02 Score=28.07 Aligned_cols=148 Identities=13% Similarity=0.167 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+++.|.+.+=+--.. +.++=.+.++.+.+ ...++.+.+=.. . +.++|++.++..++.+..
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCCC
Confidence 67888999999999999888764331 23444445666666 345677776665 3 689999999999988865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhccccCCeEEEcC---CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~~iPIa~dE---sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
-..+=-|.- ..+ .+-++.+++ .+++||.+=. .-.+++.+.++.+. .+.++-+|-+- | +....+++
T Consensus 102 av~~~pP~y~~~s~~~i~~~f~~v~~----a~~~pvilYn~~g~~l~~~~~~~La~~-~~nvvgiKds~-~d~~~~~~~~ 175 (296)
T TIGR03249 102 GYLLLPPYLINGEQEGLYAHVEAVCE----STDLGVIVYQRDNAVLNADTLERLADR-CPNLVGFKDGI-GDMEQMIEIT 175 (296)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHhh-CCCEEEEEeCC-CCHHHHHHHH
Confidence 334555542 111 223445554 5788876532 13456667777642 46888899863 6 77777665
Q ss_pred HHHHHcCCeEEEc
Q 013681 348 KATRKSGLHLMID 360 (438)
Q Consensus 348 ~~A~~~gi~~~~~ 360 (438)
+... .++.+..+
T Consensus 176 ~~~~-~~~~v~~G 187 (296)
T TIGR03249 176 QRLG-DRLGYLGG 187 (296)
T ss_pred HHcC-CCeEEEeC
Confidence 4332 24555544
No 285
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=55.24 E-value=2.2e+02 Score=28.05 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
++++..+.++.+++.+.. .|+=-+. ...++.++++++ .+++||..-+ +.+.++.+.+.+.+ +|+|.
T Consensus 127 ~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~-v~s~~~a~~a~~~G-~d~I~ 198 (299)
T cd02809 127 DREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKG-ILTPEDALRAVDAG-ADGIV 198 (299)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEee-cCCHHHHHHHHHCC-CCEEE
Confidence 445555555555544432 3332111 123556666654 6789998876 47788888888764 88887
Q ss_pred ecCCc-----chHHHHHHHHHHHHHc--CCeEEEccCCchhHH
Q 013681 333 IKLAK-----FGVLGTLQIIKATRKS--GLHLMIDGMIETRLA 368 (438)
Q Consensus 333 lk~~~-----~Gi~~~~~~~~~A~~~--gi~~~~~s~~es~ig 368 (438)
+--.- .|...+..+.++++.. ++++...+-+.++..
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 241 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTD 241 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHH
Confidence 74311 1233444445555555 488887776655433
No 286
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=55.09 E-value=2.5e+02 Score=28.66 Aligned_cols=128 Identities=16% Similarity=0.303 Sum_probs=73.5
Q ss_pred CchHHHHHHHHHHhhCCCcEEEEeCCCCC-------CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 230 NITADFDVLQAIHAVHPHCSFILDANEGY-------TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 230 d~~~di~~l~aiR~~~~~~~L~vDAN~~~-------s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
.+++..+.++.+++.+|... .|.++.. ..++..+.++.|.+.++....|- ...++-+...+..+.+|+.
T Consensus 71 ~~e~q~~~v~~vK~~~~~a~--~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID--~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 71 SIEEQAEEVKKVKRYYPNAS--KDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVID--SAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp CHHHHHHHHHHHHTHHTTHH--BHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE---SSTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcccccccc--ccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEcc--ccCccHHHHHHHHHHHHHh
Confidence 45666677777766433211 1222221 12345666666666555422232 2223222222233333345
Q ss_pred cC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC---cc--------h---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 303 YG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA---KF--------G---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 303 ~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~---~~--------G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
.+ +||..+- +.+.+.+++|++.+ +|+|.+-.. -| | +|...+.++.|++++++++-.+-+
T Consensus 147 ~~~~~viaGN-V~T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi 220 (352)
T PF00478_consen 147 FPDVPVIAGN-VVTYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGI 220 (352)
T ss_dssp STTSEEEEEE-E-SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-
T ss_pred CCCceEEecc-cCCHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCc
Confidence 55 9998885 77889999999987 888877532 22 3 677888999999999999876644
No 287
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=54.94 E-value=1.3e+02 Score=28.12 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--------CchHHHHHH----HHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l----~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
+.++..+.+++++++|-..|=+-.+. +.++++++| +.+++..+++.|.||.. +++.+.+-++.
T Consensus 17 ~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~~~v~~~aL~~-- 91 (210)
T PF00809_consen 17 SEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF---NPEVAEAALKA-- 91 (210)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---CHHHHHHHHHc--
Confidence 34556777999999999999988763 345666655 33344457999999974 45554444443
Q ss_pred hCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 272 ~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
+.. +|=.-..-.+.+.+..|++ +.+.|+.+
T Consensus 92 --g~~--~ind~~~~~~~~~~~~l~a----~~~~~vV~ 121 (210)
T PF00809_consen 92 --GAD--IINDISGFEDDPEMLPLAA----EYGAPVVL 121 (210)
T ss_dssp --TSS--EEEETTTTSSSTTHHHHHH----HHTSEEEE
T ss_pred --Ccc--eEEecccccccchhhhhhh----cCCCEEEE
Confidence 432 5655555333567777765 45666543
No 288
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=54.40 E-value=1.6e+02 Score=29.41 Aligned_cols=114 Identities=14% Similarity=0.246 Sum_probs=68.2
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eCC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN 255 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DAN 255 (438)
+|+..-+... +.+. +.+.++.||+.+=+.... ++++++++-+.+.+. +- +.+|- | +.+
T Consensus 75 VPValHLDHg~~~e~----i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 150 (307)
T PRK05835 75 IPVALHLDHGTTFES----CEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK 150 (307)
T ss_pred CeEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 5655555443 4443 445678999999999775 789999988887662 21 12221 1 112
Q ss_pred C-CCC-HHHHHHHHHHhhh------CC-CCCceE--ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHH
Q 013681 256 E-GYT-SEEAVEVLGKLND------MG-VIPVLF--EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN 317 (438)
Q Consensus 256 ~-~~s-~~~A~~~l~~L~~------~~-l~~~~i--EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~ 317 (438)
. .|| |++|.+|.++..- +| .|=.|- .+| .=|++-++++++ .+++|+++-=.--.++
T Consensus 151 ~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p--~L~f~~L~~I~~----~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 151 DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEP--KLDFERLQEVKR----LTNIPLVLHGASAIPD 217 (307)
T ss_pred cccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCch
Confidence 1 154 9999999987431 11 110122 333 347888888875 5789988765433333
No 289
>PRK05481 lipoyl synthase; Provisional
Probab=54.32 E-value=2.2e+02 Score=27.93 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC--Cc-----hHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh-C
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR--NI-----TADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND-M 273 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~-----~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~-~ 273 (438)
.+++++.++++++.+.|++-+-+--|. |. +.=.++++.|++..|++.+++ +++..-..++.+++.++-.+ +
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~ 159 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVF 159 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCccee
Confidence 478999999999999999998887553 21 223356677777778776653 33222223443443333211 1
Q ss_pred CCCCceEecCC--------CCCChhhHHHHHHhhccc-------cCCeEEEcCCCCCHHHHHHHHHcCCccEEEe----c
Q 013681 274 GVIPVLFEQPV--------HRDDWSGLHDVSNFARDT-------YGISVVADESCRSLNDVQKVMQENLASVVNI----K 334 (438)
Q Consensus 274 ~l~~~~iEqPl--------~~~d~~~~a~L~~~~r~~-------~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l----k 334 (438)
.. .+ +|. +...++.+.++-+.+++. +++=+..+|+.....+....++...+|.+.+ .
T Consensus 160 ~~---~~-ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 160 NH---NL-ETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred ec---cc-cChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 11 11 232 123455555444444332 2333445676666666667777767777765 1
Q ss_pred CC----cc-h---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 335 LA----KF-G---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 335 ~~----~~-G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
|+ .+ . -....++..++.+.|+..+.++.+
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~ 272 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPL 272 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCc
Confidence 11 22 2 345778889999999977776654
No 290
>PLN02389 biotin synthase
Probab=54.27 E-value=1.7e+02 Score=30.07 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEccC
Q 013681 340 VLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
....++.++.|++.|+.+..|..
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEE
Confidence 77889999999999999876643
No 291
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=53.74 E-value=1.5e+02 Score=30.85 Aligned_cols=163 Identities=13% Similarity=0.207 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeC-------CCCCCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDA-------NEGYTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDA-------N~~~s~~~A~~~l~ 268 (438)
.-++|...++++-+.||..+.+--|.-| ++-.+|||++|+.-++-.|..=. ...|+-+-.-+|.+
T Consensus 26 rt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ 105 (472)
T COG5016 26 RTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVE 105 (472)
T ss_pred hHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHH
Confidence 4578888899998999999999988743 34578999999976543332111 12344444456777
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC----eEEEcC-CCCCHHHH----HHHHHcCCccEEEecCCcch
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI----SVVADE-SCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i----PIa~dE-sl~~~~d~----~~ll~~~a~d~i~lk~~~~G 339 (438)
+..+.|+.+.-|=+-+. |...|+.-.+.++ +.+. -|.-.= -.++.+.+ +++++.+ +|.|.+|-+- |
T Consensus 106 ka~~nGidvfRiFDAlN--D~RNl~~ai~a~k-k~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g-~DSIciKDma-G 180 (472)
T COG5016 106 KAAENGIDVFRIFDALN--DVRNLKTAIKAAK-KHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG-VDSICIKDMA-G 180 (472)
T ss_pred HHHhcCCcEEEechhcc--chhHHHHHHHHHH-hcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC-CCEEEeeccc-c
Confidence 77777765333333332 3333332222221 1222 111111 13444432 5666654 7999998755 6
Q ss_pred -HH--HHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 340 -VL--GTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 340 -i~--~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
++ .+-+++...+ ..++++-+|+.--||++.++
T Consensus 181 lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ 216 (472)
T COG5016 181 LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT 216 (472)
T ss_pred cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHH
Confidence 44 4666666554 46999999997666655443
No 292
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=53.43 E-value=2.5e+02 Score=28.16 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEec--C-----Cc----ch---HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIK--L-----AK----FG---VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk--~-----~~----~G---i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+||..+ .+.+.++.+.+++.+ +|+|.+- + ++ .| ++...++.+.+++++++++..+-+.+
T Consensus 136 v~Vi~G-~v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~ 208 (325)
T cd00381 136 VDVIAG-NVVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRT 208 (325)
T ss_pred ceEEEC-CCCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCC
Confidence 788764 457788888888864 8888762 1 11 12 34456677777888999987654433
No 293
>PLN02389 biotin synthase
Probab=53.21 E-value=2.7e+02 Score=28.59 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec------CC--CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH--hhh
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV------GR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK--LND 272 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv------G~--d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~--L~~ 272 (438)
.+++++.+.+++..+.|++.|=+-. +. +++.=.+.++.+++.+ +. +-++-+...++.++.|+. +..
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~--l~--i~~s~G~l~~E~l~~LkeAGld~ 191 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG--ME--VCCTLGMLEKEQAAQLKEAGLTA 191 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCC--cE--EEECCCCCCHHHHHHHHHcCCCE
Confidence 4899999999998899998876532 11 1334445566666543 33 345555554444444433 333
Q ss_pred CCCCCceEe-------cCCCCCChhhHHHHHHhhccccCCeE------EEcCCCCCHHHHHHHHHcC--CccEEEe----
Q 013681 273 MGVIPVLFE-------QPVHRDDWSGLHDVSNFARDTYGISV------VADESCRSLNDVQKVMQEN--LASVVNI---- 333 (438)
Q Consensus 273 ~~l~~~~iE-------qPl~~~d~~~~a~L~~~~r~~~~iPI------a~dEsl~~~~d~~~ll~~~--a~d~i~l---- 333 (438)
+++ -+| +=++..+|+..-+..+.++ +.++++ .++|+.....+....++.- .++.+.+
T Consensus 192 ~~~---~LeTs~~~y~~i~~~~s~e~rl~ti~~a~-~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~ 267 (379)
T PLN02389 192 YNH---NLDTSREYYPNVITTRSYDDRLETLEAVR-EAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALV 267 (379)
T ss_pred EEe---eecCChHHhCCcCCCCCHHHHHHHHHHHH-HcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccce
Confidence 332 244 2233455654433322222 345554 3456555444444444433 3444432
Q ss_pred -cC-Ccc-----h-HHHHHHHHHHHHHcC
Q 013681 334 -KL-AKF-----G-VLGTLQIIKATRKSG 354 (438)
Q Consensus 334 -k~-~~~-----G-i~~~~~~~~~A~~~g 354 (438)
-+ +.+ . ..+.++++++++-.-
T Consensus 268 P~~GTpL~~~~~~s~~e~lr~iAi~Rl~l 296 (379)
T PLN02389 268 AVKGTPLEDQKPVEIWEMVRMIATARIVM 296 (379)
T ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 11 111 2 556788888887653
No 294
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=53.15 E-value=67 Score=32.47 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=46.8
Q ss_pred ccCCeEEEcC-CCC--CHHHHHHHHHcCC----------ccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCR--SLNDVQKVMQENL----------ASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~--~~~d~~~ll~~~a----------~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ... +.+.+.++++.+. ++-+++|.+..= +.-++++.++|++.|+.+-
T Consensus 83 ~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 83 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred HCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788988763 444 6788899999874 899999999863 7789999999999999874
No 295
>PRK12999 pyruvate carboxylase; Reviewed
Probab=52.95 E-value=98 Score=36.68 Aligned_cols=150 Identities=9% Similarity=0.124 Sum_probs=92.5
Q ss_pred HHHHHH-HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCC--cEEE-----EeCCCC-CCHHHHHHHHHHhhhCC
Q 013681 205 PAEASE-LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPH--CSFI-----LDANEG-YTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 205 ~~~~~~-~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~--~~L~-----vDAN~~-~s~~~A~~~l~~L~~~~ 274 (438)
|+.+.+ .++...+.|...|.+-... +++.=...++++++.+.. +.+. .|+... ++++..+++++.+.+.+
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444433 3777778898888877654 343333346777776532 3332 366554 89999999999999999
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCC-C--HHHHHHHHHcCCccEEEecCCcch-HHH---HHHHH
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-S--LNDVQKVMQENLASVVNIKLAKFG-VLG---TLQII 347 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~-~--~~d~~~ll~~~a~d~i~lk~~~~G-i~~---~~~~~ 347 (438)
.+...|=+..---......+|-+.+|+..++||..-=... + .......++.+ +|++..-.+-+| .++ +..++
T Consensus 705 a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~le~vv 783 (1146)
T PRK12999 705 AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSLNSIV 783 (1146)
T ss_pred CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHHHHHH
Confidence 8766788887666667777777777777889997643211 1 12235556654 666555444443 332 44455
Q ss_pred HHHHHcCC
Q 013681 348 KATRKSGL 355 (438)
Q Consensus 348 ~~A~~~gi 355 (438)
...+..|.
T Consensus 784 ~~L~~~~~ 791 (1146)
T PRK12999 784 AALEGTER 791 (1146)
T ss_pred HHHHhcCC
Confidence 55554443
No 296
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=52.75 E-value=1.3e+02 Score=27.91 Aligned_cols=94 Identities=13% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhCCCCCceE---ecCC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 261 EEAVEVLGKLNDMGVIPVLF---EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~i---EqPl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
.+..++++..++.+.. || =++. ..+.++..+.+++ ...+||...--..+..+++.+.+.+ +|.+.+...
T Consensus 31 ~~~~~~A~~~~~~GA~--~l~v~~~~~~~~g~~~~~~~i~~----~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~ 103 (217)
T cd00331 31 FDPVEIAKAYEKAGAA--AISVLTEPKYFQGSLEDLRAVRE----AVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVA 103 (217)
T ss_pred CCHHHHHHHHHHcCCC--EEEEEeCccccCCCHHHHHHHHH----hcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeec
Confidence 3456677777766532 33 2232 2345666666654 4689999877667776778888765 888877655
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
........++...+...|+.+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 104 ALDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 5555667888888899999976543
No 297
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.41 E-value=1.2e+02 Score=29.73 Aligned_cols=93 Identities=13% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEec---------CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ---------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq---------Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
.|+.++-+++++.|.+.|+. .||= |-..+.++.++.|.+ ..+..+.. .+.+..++++.++.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~----~~~~~~~~--l~~~~~~ie~A~~~g- 92 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLS--YIEVASFVSPKWVPQMADAAEVMAGIQR----RPGVTYAA--LTPNLKGLEAALAAG- 92 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCcCcccccccccHHHHHHhhhc----cCCCeEEE--EecCHHHHHHHHHcC-
Confidence 57899999999999999985 8995 333344555555542 22344432 235788999988875
Q ss_pred ccEEEecCC--------cch------HHHHHHHHHHHHHcCCeEE
Q 013681 328 ASVVNIKLA--------KFG------VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 328 ~d~i~lk~~--------~~G------i~~~~~~~~~A~~~gi~~~ 358 (438)
++.+.+=.+ +.| +....+.+++|+++|+.+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 555554321 222 2246779999999999874
No 298
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=52.07 E-value=1.5e+02 Score=28.64 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=69.5
Q ss_pred HHHHHHhhhCCCC--CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHH
Q 013681 264 VEVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL 341 (438)
Q Consensus 264 ~~~l~~L~~~~l~--~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~ 341 (438)
.++++..++.|.. +..-|+-.-.++++.++.+++ .+.+||-.-.-++++.++.+.... .+|.+.+=....+-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~----~v~~PvL~KDFIid~~QI~ea~~~-GADavLLI~~~L~~~ 138 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSS----ELKIPVLRKDFILDEIQIREARAF-GASAILLIVRILTPS 138 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHH----hcCCCEEeccccCCHHHHHHHHHc-CCCEEEeEHhhCCHH
Confidence 3455555655432 234466667788888888875 578999999999999999877764 588887766666655
Q ss_pred HHHHHHHHHHHcCCeEEEcc
Q 013681 342 GTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s 361 (438)
...++++.|+..|+.+.+-.
T Consensus 139 ~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHcCCceEEEE
Confidence 78899999999999987544
No 299
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=51.71 E-value=2.5e+02 Score=27.74 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=87.2
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEe--c-----C-------CCchHHHHHHHHHHhhC--CCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLN--V-----G-------RNITADFDVLQAIHAVH--PHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlK--v-----G-------~d~~~di~~l~aiR~~~--~~~~L--~v 252 (438)
.+|+..-+ +.+++....+-++++.+.|--.+-|. + | .++++-+++++++++.- +++.| |-
T Consensus 78 ~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ART 157 (289)
T COG2513 78 DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIART 157 (289)
T ss_pred CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeeh
Confidence 45654433 34567788888899999998877763 2 2 15677888999999854 46554 46
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCH-HHHHHHHHcCCccEE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL-NDVQKVMQENLASVV 331 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~-~d~~~ll~~~a~d~i 331 (438)
|+-..=..++|++.+++..+-|-...|.|-.- +.+.++++++.. +.++|+-.-|.-.++ .+..++- .-.+..|
T Consensus 158 da~~~~~ld~AI~Ra~AY~eAGAD~if~~al~---~~e~i~~f~~av--~~pl~~N~t~~g~tp~~~~~~L~-~~Gv~~V 231 (289)
T COG2513 158 DALLVEGLDDAIERAQAYVEAGADAIFPEALT---DLEEIRAFAEAV--PVPLPANITEFGKTPLLTVAELA-ELGVKRV 231 (289)
T ss_pred HHHHhccHHHHHHHHHHHHHcCCcEEccccCC---CHHHHHHHHHhc--CCCeeeEeeccCCCCCcCHHHHH-hcCceEE
Confidence 66444348999999999998876544655444 377888888732 234555554433221 1223333 3357776
Q ss_pred EecCCc
Q 013681 332 NIKLAK 337 (438)
Q Consensus 332 ~lk~~~ 337 (438)
..-++.
T Consensus 232 ~~~~~~ 237 (289)
T COG2513 232 SYGLTA 237 (289)
T ss_pred EECcHH
Confidence 665543
No 300
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.66 E-value=1.3e+02 Score=27.42 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
+.+++.+.++++-+.++. |+|=..+..+..+.-+..+. ..+.=....-.+...+++..+++.+ .|++..-- .
T Consensus 22 ~~~~~~~~~~~~~~~Gv~--~vqlr~k~~~~~e~~~~~~~---~~~~~~~g~gtvl~~d~~~~A~~~g-Adgv~~p~--~ 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLRE---KLPECIIGTGTILTLEDLEEAIAAG-AQFCFTPH--V 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHH---hCCCcEEeEEEEEcHHHHHHHHHcC-CCEEECCC--C
Confidence 789999999999999985 99999887665554444332 1222112223566678888888765 67763321 1
Q ss_pred hHHHHHHHHHHHHHcCCeEEEccC
Q 013681 339 GVLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 339 Gi~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
| .+....++.+++.+++++.
T Consensus 94 ~----~~~~~~~~~~~~~~i~G~~ 113 (187)
T PRK07455 94 D----PELIEAAVAQDIPIIPGAL 113 (187)
T ss_pred C----HHHHHHHHHcCCCEEcCcC
Confidence 1 4567788899999999854
No 301
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.51 E-value=68 Score=31.58 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=47.6
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
..++||++-= ...+.+++.+.++.+ +.-+++|.+..- +.-++++.++|++.|+.+-
T Consensus 73 ~~~vPV~lHlDHg~~~~~~~~ai~~G-FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 73 KYGVPVALHLDHGASFEDCKQAIRAG-FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHhcC-CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 5789999875 444888999999875 899999999874 7779999999999999884
No 302
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=51.35 E-value=98 Score=34.30 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=44.4
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-H----------------------HHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V----------------------LGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i----------------------~~~~~~~~~A~~~gi~~~ 358 (438)
.+++|+.+|=.. ++.-....++ .++-|.+.|..+| - .....+++.|+++|+++-
T Consensus 151 g~~iPLVADIHF-~~~~Al~a~~--~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iR 227 (733)
T PLN02925 151 GYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMR 227 (733)
T ss_pred CCCCCEEEecCC-CHHHHHHHHH--hcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEE
Confidence 578999999664 3444444554 4899999999987 4 234569999999999999
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
++...
T Consensus 228 IGvN~ 232 (733)
T PLN02925 228 IGTNH 232 (733)
T ss_pred EecCC
Confidence 87654
No 303
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=51.20 E-value=3.3e+02 Score=28.93 Aligned_cols=117 Identities=25% Similarity=0.326 Sum_probs=78.1
Q ss_pred HHHHHHHhhcCCcEEEEecC-CCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec---C-
Q 013681 209 SELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ---P- 283 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG-~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq---P- 283 (438)
.+.++.+.+.|.+.+-+..- .....-++.++.+|+.+|++.+.+ ....+.++|....+. +.. +|-= |
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~a----Gad--~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIEA----GAD--AVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHHc----CCC--EEEECCCCC
Confidence 56778888999998877753 234456677888888888877777 445677877766653 321 3310 1
Q ss_pred -------C---CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 284 -------V---HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 284 -------l---~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+ ...+++...++++.+ ++.++||..|--+.+..|+.+++..+ +|.+.+--
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~-~~~~~~viadGGi~~~~di~kAla~G-A~~v~~G~ 361 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAA-KKYGIPVIADGGIRYSGDIAKALAAG-ASAVMLGS 361 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCCCCHHHHHHHHHhC-CCEEEECc
Confidence 0 012455555555432 24689999999999999999999875 67776543
No 304
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=51.19 E-value=2.6e+02 Score=27.69 Aligned_cols=137 Identities=10% Similarity=0.143 Sum_probs=84.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh--CCC--cEEEEeC----------CCC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV--HPH--CSFILDA----------NEG 257 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~--~~~--~~L~vDA----------N~~ 257 (438)
++|+..-+...+.+ .+++.++.||+.+-+.-.. ++++.++..+.+++. ..+ ++.-+.. ...
T Consensus 77 ~vPV~lHLDH~~~~----~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~ 152 (293)
T PRK07315 77 TVPVAIHLDHGHYE----DALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGE 152 (293)
T ss_pred CCcEEEECCCCCHH----HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccC
Confidence 34655555544433 3445678999999999764 788889888888872 112 1211111 112
Q ss_pred C-CHHHHHHHHHHhhhC-CCC--Cc--eEecCCCCCChhhHHHHHHhhcccc-CCeE-EEcCCCCCHHHHHHHHHcCCcc
Q 013681 258 Y-TSEEAVEVLGKLNDM-GVI--PV--LFEQPVHRDDWSGLHDVSNFARDTY-GISV-VADESCRSLNDVQKVMQENLAS 329 (438)
Q Consensus 258 ~-s~~~A~~~l~~L~~~-~l~--~~--~iEqPl~~~d~~~~a~L~~~~r~~~-~iPI-a~dEsl~~~~d~~~ll~~~a~d 329 (438)
| +++||.++.+.=.++ .+. .. ..-.+.+.-+++.++++++ .+ ++|+ +.|=|=++.++++++++.+ ++
T Consensus 153 ~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~----~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~ 227 (293)
T PRK07315 153 LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTE----AVPGFPIVLHGGSGIPDDQIQEAIKLG-VA 227 (293)
T ss_pred CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHH----hccCCCEEEECCCCCCHHHHHHHHHcC-CC
Confidence 4 699999988432221 110 00 0223334557888888876 46 4886 4556777889999999886 66
Q ss_pred EEEecCCcc
Q 013681 330 VVNIKLAKF 338 (438)
Q Consensus 330 ~i~lk~~~~ 338 (438)
-|++.-...
T Consensus 228 KiNv~T~i~ 236 (293)
T PRK07315 228 KVNVNTECQ 236 (293)
T ss_pred EEEEccHHH
Confidence 777765443
No 305
>PLN02321 2-isopropylmalate synthase
Probab=50.99 E-value=1.5e+02 Score=32.77 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe--cCC-CCCChhhHHHHHHhhccccC----CeEEEcCCCCCHHHHHHHHHcC--C
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFE--QPV-HRDDWSGLHDVSNFARDTYG----ISVVADESCRSLNDVQKVMQEN--L 327 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE--qPl-~~~d~~~~a~L~~~~r~~~~----iPIa~dEsl~~~~d~~~ll~~~--a 327 (438)
.++.+|-+++++.|.++|+. .|| =|. .++|++.++.+.+.+.+... +|....=.-.+..++.+.++.. +
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd--~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a 181 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVD--IIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHA 181 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCC
Confidence 37899999999999999985 899 464 46788888888652111000 1321111223567777777652 1
Q ss_pred ----ccEEE----------ecCCcch-HHHHHHHHHHHHHcCC-eEEEccC
Q 013681 328 ----ASVVN----------IKLAKFG-VLGTLQIIKATRKSGL-HLMIDGM 362 (438)
Q Consensus 328 ----~d~i~----------lk~~~~G-i~~~~~~~~~A~~~gi-~~~~~s~ 362 (438)
++++. ++-++-- +..+.+.+++|+++|. .+..+..
T Consensus 182 ~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E 232 (632)
T PLN02321 182 KRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE 232 (632)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc
Confidence 22222 1111112 4457788999999988 4666654
No 306
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=49.88 E-value=1.9e+02 Score=27.38 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=63.9
Q ss_pred HHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEecCCCC---
Q 013681 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHR--- 286 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~--- 286 (438)
++...+.|-..+-+-.-.+.+.=.+.++..++ .+..+++|--+.|+++++.++++.+-. ..+| .-+-+...-
T Consensus 73 ~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~--~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H-~g~D~q~~G~~~ 149 (217)
T COG0269 73 ARMAFEAGADWVTVLGAADDATIKKAIKVAKE--YGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH-RGRDAQAAGKSW 149 (217)
T ss_pred HHHHHHcCCCEEEEEecCCHHHHHHHHHHHHH--cCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE-ecccHhhcCCCc
Confidence 33445677766665443333322222333333 348999999999999999888886431 1112 122222211
Q ss_pred --CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 287 --DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 287 --~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
++++.+.++.. ....+-|++| ++++++..+...+ +++++.--
T Consensus 150 ~~~~l~~ik~~~~---~g~~vAVaGG---I~~~~i~~~~~~~-~~ivIvGr 193 (217)
T COG0269 150 GEDDLEKIKKLSD---LGAKVAVAGG---ITPEDIPLFKGIG-ADIVIVGR 193 (217)
T ss_pred cHHHHHHHHHhhc---cCceEEEecC---CCHHHHHHHhcCC-CCEEEECc
Confidence 23445555542 1245667776 6678877777654 77777653
No 307
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=49.38 E-value=79 Score=32.42 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC----chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.+++++.+++++..+.|.+-+=+--|-+ ++-..+.++.|++.+|++.+. +||+.+ +.++..... +
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~-----a~s~~e-i~~~~~~~~--~--- 158 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIH-----ALSAGE-ILFLAREGG--L--- 158 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhc-----ccCHHH-hHHHHhccC--C---
Confidence 4789999999999999999999999853 344566788899888865442 455443 222222211 1
Q ss_pred eEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEE
Q 013681 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 279 ~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~ 358 (438)
.--+.|++|..+ .--.+|..+-|-+. +++++.+ . +.++....++++.+.|.+.||+..
T Consensus 159 --------s~~E~l~~Lk~a--Gldsmpg~~aeil~--e~vr~~~---------~-p~K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 159 --------SYEEVLKRLKEA--GLDSMPGGGAEILS--EEVRKIH---------C-PPKKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred --------CHHHHHHHHHHc--CCCcCcCcceeech--HHHHHhh---------C-CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 112336666531 11235555444332 3444332 2 445557889999999999999975
Q ss_pred EccC
Q 013681 359 IDGM 362 (438)
Q Consensus 359 ~~s~ 362 (438)
-+-+
T Consensus 217 atml 220 (370)
T COG1060 217 ATML 220 (370)
T ss_pred ceeE
Confidence 5443
No 308
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=49.10 E-value=2.3e+02 Score=28.49 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=66.1
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E----e----CC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D----AN 255 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v----D----AN 255 (438)
++|+..-+... +.+. +.+.++.||+.+=+.... +++++++..+.+.+. +- +.+|- | | .+
T Consensus 85 ~VPV~lHLDHg~~~e~----i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~ 160 (321)
T PRK07084 85 PIPIVLHLDHGDSFEL----CKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEH 160 (321)
T ss_pred CCcEEEECCCCCCHHH----HHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcc
Confidence 35554444433 4443 455678999999998765 789999888777662 21 22222 1 1 11
Q ss_pred CCC-CHHHHHHHHHHhh------hCC-CCCceEecC---CCCCChhhHHHHHHhhcccc-CCeEEEcCC
Q 013681 256 EGY-TSEEAVEVLGKLN------DMG-VIPVLFEQP---VHRDDWSGLHDVSNFARDTY-GISVVADES 312 (438)
Q Consensus 256 ~~~-s~~~A~~~l~~L~------~~~-l~~~~iEqP---l~~~d~~~~a~L~~~~r~~~-~iPIa~dEs 312 (438)
..| +|++|.+|+++.. ..| .|=.|-..| -+.=|++-++++++ .+ ++|+++-=.
T Consensus 161 ~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~----~~~~vPLVLHGg 225 (321)
T PRK07084 161 HTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEK----RIPGFPIVLHGS 225 (321)
T ss_pred cccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHH----hcCCCCEEEeCC
Confidence 225 4999999999632 111 121133322 12347888888875 56 699877653
No 309
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.03 E-value=2.5e+02 Score=27.03 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=63.2
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC----------------------CCchHHHHHHHHHHhhCCC--cEE
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVG----------------------RNITADFDVLQAIHAVHPH--CSF 250 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG----------------------~d~~~di~~l~aiR~~~~~--~~L 250 (438)
-.|.+.+.-+.+...+.++.+.+.|-..+-+-+- ..+++-++.++++|+...+ +.+
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~ 92 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGL 92 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 3456666667777788888888888888887762 1234566677888864222 336
Q ss_pred EEeCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 251 ILDANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 251 ~vDAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|.=.|-- ...++..++++.++++++.+.++=-|..+ .+.++.+++
T Consensus 93 m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~--~eri~~i~~ 161 (256)
T TIGR00262 93 LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD--DERLKQIAE 161 (256)
T ss_pred EEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC--HHHHHHHHH
Confidence 6666631 23467777888888888754455555543 344555554
No 310
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.00 E-value=3.1e+02 Score=28.04 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (438)
+.++..+.++.+.+.|+..|-+-+-..-+.|.+.++.+++.+.+..+.+-+ ....++ ++++.+.++...-+=-|
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d----i~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALN--RAVKSD----IDASIDCGVDAVHIFIA 97 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEc--ccCHHH----HHHHHhCCcCEEEEEEc
Confidence 677778888889899999988644333456778888888765555555442 222322 22223334331122223
Q ss_pred CCCC------------ChhhHHHHHHhhccccCCeEEE---cCCCCCHHHHH----HHHHcCCccEEEecCCcch---HH
Q 013681 284 VHRD------------DWSGLHDVSNFARDTYGISVVA---DESCRSLNDVQ----KVMQENLASVVNIKLAKFG---VL 341 (438)
Q Consensus 284 l~~~------------d~~~~a~L~~~~r~~~~iPIa~---dEsl~~~~d~~----~ll~~~a~d~i~lk~~~~G---i~ 341 (438)
...- .++.+.+..+.+++ .+..+.. |.+-.++..+. .+.+.+ ++.|.+.=+. | ..
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~-~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~-G~~~P~ 174 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKD-HGLYVSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTV-GILDPF 174 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccC-CCCCHH
Confidence 3321 01333333333332 3444433 34445555543 333433 5666654333 5 34
Q ss_pred HHHHHHHHH-HHcCCeEEEccCCchhHHHH
Q 013681 342 GTLQIIKAT-RKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 342 ~~~~~~~~A-~~~gi~~~~~s~~es~ig~~ 370 (438)
...+++... +..++++-+|+-...+++++
T Consensus 175 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~A 204 (378)
T PRK11858 175 TMYELVKELVEAVDIPIEVHCHNDFGMATA 204 (378)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcCHHHH
Confidence 456665544 34478888887655555443
No 311
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=48.82 E-value=3e+02 Score=27.87 Aligned_cols=129 Identities=17% Similarity=0.268 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
.++++-.+.+++....-...+-+-+|.. ++|.++++++-+.++.+ -|.||.-++.+.. .++.++.+++. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~-~i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEH-FVEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHH-HHHHHHHHHhh-----C--
Confidence 3667666666553333334455566653 57899999999987554 3678999998843 34555544431 1
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec-------CCc----ch---HHHHHHHH
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK-------LAK----FG---VLGTLQII 347 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk-------~~~----~G---i~~~~~~~ 347 (438)
.+.+|..| .+.+.++.+++++.+ +|.+.+- -++ +| ++...+++
T Consensus 149 ---------------------p~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 ---------------------PEHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ---------------------CCCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 12455544 456789999999875 7776543 111 12 55667777
Q ss_pred HHHHHcCCeEEEccCC
Q 013681 348 KATRKSGLHLMIDGMI 363 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~ 363 (438)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 7788889999876654
No 312
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=48.52 E-value=2.3e+02 Score=28.84 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecC--CCC-------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQP--VHR-------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP--l~~-------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
.|+.++=+++++.|.+.++. .||-= ..+ ++-+.++.+.+. ....++. + +.+..|+++.++.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~~--~~~~~~~-l---~~n~~die~A~~~g- 134 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLP--VVEATSFVSPKWVPQLADAKDVMAAVRNL--EGARFPV-L---TPNLKGFEAAIAAG- 134 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEECCCcCcccccccccHHHHHHHHHhc--cCCceeE-E---cCCHHHHHHHHHcC-
Confidence 57889999999999999985 89853 332 222233444321 1222332 2 34889999999875
Q ss_pred ccEEEecCC-----------c--ch-HHHHHHHHHHHHHcCCeEE
Q 013681 328 ASVVNIKLA-----------K--FG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 328 ~d~i~lk~~-----------~--~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
++.+.+=++ + -- +....+++++|+++|+.+.
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 555544311 1 11 4445679999999999884
No 313
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=48.36 E-value=1.2e+02 Score=30.92 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=46.4
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh----hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~----~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (438)
.+..|.+...+++.++.+.|-..+.+-+-. .++.+.++.|++ .+..+.|..|-+-- +.-|++.++.++..
T Consensus 25 t~t~Dv~atv~QI~~L~~aGceivRvavp~--~~~a~al~~I~~~l~~~g~~iPlVADIHFd--~~lAl~a~~~v~ki 98 (359)
T PF04551_consen 25 TDTRDVEATVAQIKRLEEAGCEIVRVAVPD--MEAAEALKEIKKRLRALGSPIPLVADIHFD--YRLALEAIEAVDKI 98 (359)
T ss_dssp S-TT-HHHHHHHHHHHHHCT-SEEEEEE-S--HHHHHHHHHHHHHHHCTT-SS-EEEEESTT--CHHHHHHHHC-SEE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHhhccCCCCCCeeeecCCC--HHHHHHHHHHhCeE
Confidence 344577888999999999999999998854 566666766665 35679999998754 45566666665543
No 314
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=48.20 E-value=92 Score=30.20 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred HHHHHhhhCCCC--CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHH
Q 013681 265 EVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLG 342 (438)
Q Consensus 265 ~~l~~L~~~~l~--~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~ 342 (438)
++++..++.|.. +..-|+..-.+.++.+..+++ .+++||---.-++++.++.+.-..+ .|.|.+=....+-..
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~----~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~~~L~~~~ 146 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIAAILSDDQ 146 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH----HSSS-EEEES---SHHHHHHHHHTT--SEEEEEGGGSGHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH----HhCCCcccccCCCCHHHHHHHHHcC-CCEeehhHHhCCHHH
Confidence 455555555432 234577777777888887775 5899999999999999998777664 888888777777666
Q ss_pred HHHHHHHHHHcCCeEEEcc
Q 013681 343 TLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s 361 (438)
..+++++|+..|+.+.+-.
T Consensus 147 l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEE
Confidence 7899999999999987543
No 315
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.72 E-value=2.8e+02 Score=27.20 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=76.2
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh--CCCcEEEEeC------------CC--CCCHHHHHHHHHHhh-h
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV--HPHCSFILDA------------NE--GYTSEEAVEVLGKLN-D 272 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~--~~~~~L~vDA------------N~--~~s~~~A~~~l~~L~-~ 272 (438)
.+++.++.||+.+-+.-.. ++++.++..+.+++. .-++.+-.|. .+ .-+++||.++.++.- +
T Consensus 89 ~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~D 168 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVD 168 (281)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCC
Confidence 4555678999999999764 678888888888773 1222222221 11 236999999986521 1
Q ss_pred C-----C-CCCceEecCCCCCChhhHHHHHHhhccccCCeE-EEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 273 M-----G-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV-VADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 273 ~-----~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI-a~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
| + +|..+ . .-+.-+++.++++++ .+++|+ +.|=|=++.+++.++++.+ ++-+++--...
T Consensus 169 yLAvaiG~~hg~~-~-~~~~l~~~~L~~i~~----~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T~i~ 234 (281)
T PRK06806 169 ALAVAIGNAHGMY-N-GDPNLRFDRLQEIND----VVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVATATF 234 (281)
T ss_pred EEEEccCCCCCCC-C-CCCccCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhHHHH
Confidence 1 1 12111 1 112346888888876 578887 4555778889999999876 66677765444
No 316
>PRK07094 biotin synthase; Provisional
Probab=46.67 E-value=2.4e+02 Score=27.90 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEc
Q 013681 340 VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~ 360 (438)
....++.++.+++.|+.+..+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred HHHHHHHHHHHHHcCCeecce
Confidence 667778888888888876443
No 317
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=46.28 E-value=2.2e+02 Score=28.88 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=9.6
Q ss_pred EEEEEEEcCCcEEEEEE
Q 013681 96 VAIRVELSNGCVGWGEV 112 (438)
Q Consensus 96 ~lV~v~t~~G~~G~GE~ 112 (438)
.|++++..||....|..
T Consensus 48 ~I~DtTlRDG~Q~~g~~ 64 (347)
T PLN02746 48 KIVEVGPRDGLQNEKNI 64 (347)
T ss_pred EEEECCCCccCcCCCCC
Confidence 34455556777665543
No 318
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.96 E-value=3.1e+02 Score=26.89 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=76.8
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CCCcEEEEeCC-----------CCC-CHHHHHHHHHHhh-h
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HPHCSFILDAN-----------EGY-TSEEAVEVLGKLN-D 272 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~~~~L~vDAN-----------~~~-s~~~A~~~l~~L~-~ 272 (438)
.+++.++.||+.+-+.-.. ++++.+++.+.+.+. +-.++.-+.+- ..+ +++||.++.++.. +
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcC
Confidence 3445568899999888664 677888888888762 22333333221 123 6999999987542 1
Q ss_pred -----CC-CCCceEecCCCCCChhhHHHHHHhhccccCCeEE-EcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 273 -----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV-ADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 273 -----~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa-~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
+| +|- +..-.+.-+++.++++++ .+++|+. .|=|=++.++++++++.+ ++-+++.-...
T Consensus 169 ~Lavs~Gt~hg--~~~~~~~l~~e~L~~i~~----~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~l~ 234 (282)
T TIGR01859 169 YLAAAIGTSHG--KYKGEPGLDFERLKEIKE----LTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTDCR 234 (282)
T ss_pred EEeeccCcccc--ccCCCCccCHHHHHHHHH----HhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcHHH
Confidence 11 110 111113346788888876 5789974 455777888999999885 77788876443
No 319
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=44.88 E-value=2.9e+02 Score=30.25 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhhcCCcE---EEEecCC--CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 202 AVSPAEASELASKYCKLGFST---LKLNVGR--NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~---iKlKvG~--d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
+++.+.+...++..++.|..+ +-.-..+ +++.=.+.++.+.+.|.+.--..|.+|..+|.++.+..++|.+
T Consensus 120 lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 120 MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 345555555566666666532 2111122 1222233344444456665555677777777777777777654
No 320
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=44.76 E-value=1.6e+02 Score=32.02 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=45.5
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchH-----------------------HHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV-----------------------LGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi-----------------------~~~~~~~~~A~~~gi~~~ 358 (438)
.+++|+.+|=.+ ++.-....++ .++-+.+.|..+|= .....+++.|+++|+++-
T Consensus 86 g~~iPLVADIHF-~~~~A~~a~~--~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 86 GISIPLVADIHF-FPQAAMHVAD--FVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred CCCCCEEeecCC-ChHHHHHHHH--hcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 478999999765 4444444554 38999999988862 367889999999999999
Q ss_pred EccCCc
Q 013681 359 IDGMIE 364 (438)
Q Consensus 359 ~~s~~e 364 (438)
++...+
T Consensus 163 IGvN~G 168 (606)
T PRK00694 163 IGVNHG 168 (606)
T ss_pred EecCCc
Confidence 886543
No 321
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=44.51 E-value=2.4e+02 Score=25.60 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe-----cCC
Q 013681 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE-----QPV 284 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE-----qPl 284 (438)
+.++.+.+.|...+-+..+.. +...+.++.+++.+....+.++.+ ++.+.++.+....++ +-..-++ |.+
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~---t~~e~~~~~~~~~d~-i~~~~~~~g~tg~~~ 144 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPA---TPLEFLEYVLPDVDL-VLLMSVNPGFGGQKF 144 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCC---CCHHHHHHHHhhCCE-EEEEEEcCCCCcccc
Q ss_pred CCCChhhHHHHHHhhccccC-----CeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 285 HRDDWSGLHDVSNFARDTYG-----ISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 285 ~~~d~~~~a~L~~~~r~~~~-----iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+..++.++++++ ..+ +||..+=-+ +.+.+.++++.+ +|++.+
T Consensus 145 ~~~~~~~i~~i~~----~~~~~~~~~~i~v~GGI-~~env~~l~~~g-ad~iiv 192 (210)
T TIGR01163 145 IPDTLEKIREVRK----MIDENGLSILIEVDGGV-NDDNARELAEAG-ADILVA 192 (210)
T ss_pred cHHHHHHHHHHHH----HHHhcCCCceEEEECCc-CHHHHHHHHHcC-CCEEEE
No 322
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.36 E-value=3.2e+02 Score=27.81 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=71.4
Q ss_pred eeCCCCHHHHHHHHHHHhhcCCcEEEE---ecC--C-C---c-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 199 TIPAVSPAEASELASKYCKLGFSTLKL---NVG--R-N---I-TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKl---KvG--~-d---~-~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
-+.+.+.+.+.+.|+.+.+.|...++- |-- + + + ++-++.++++++.. ++.+.-+....-+.+. +.
T Consensus 108 PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~-Gl~~~tev~d~~~v~~----~~ 182 (352)
T PRK13396 108 PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT-GLGIITEVMDAADLEK----IA 182 (352)
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc-CCcEEEeeCCHHHHHH----HH
Confidence 345678899999999998888777651 110 0 0 1 34444555544421 2333333333222222 22
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCC-CHHHHHH----HHHcCCccEEEecCCc---c-h
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR-SLNDVQK----VMQENLASVVNIKLAK---F-G 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~-~~~d~~~----ll~~~a~d~i~lk~~~---~-G 339 (438)
.+. ++ .+|=-- ...|++-+.+++ +++.||.+---.. +.+++.. +...+..+++.+.-.. . +
T Consensus 183 ~~~--d~--lqIga~-~~~n~~LL~~va-----~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~ 252 (352)
T PRK13396 183 EVA--DV--IQVGAR-NMQNFSLLKKVG-----AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQ 252 (352)
T ss_pred hhC--Ce--EEECcc-cccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCC
Confidence 221 11 121100 012344444444 4788887776555 7777643 3344555666654411 1 2
Q ss_pred ----HHHHHHHHHHHHHcCCeEEEc
Q 013681 340 ----VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 340 ----i~~~~~~~~~A~~~gi~~~~~ 360 (438)
......+..+-+..++++++.
T Consensus 253 y~~~~~dl~ai~~lk~~~~lPVi~D 277 (352)
T PRK13396 253 YTRNTLDLSVIPVLRSLTHLPIMID 277 (352)
T ss_pred CCCCCcCHHHHHHHHHhhCCCEEEC
Confidence 112344444445558888653
No 323
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=44.23 E-value=3.6e+02 Score=27.36 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=57.9
Q ss_pred HHHHHHHHhhCCCcEEEEeC----CCCCCHHHHHHHHHHhhhCC--CCCceE-e--cCCCCCChhhHHHHHHhhccccCC
Q 013681 235 FDVLQAIHAVHPHCSFILDA----NEGYTSEEAVEVLGKLNDMG--VIPVLF-E--QPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 235 i~~l~aiR~~~~~~~L~vDA----N~~~s~~~A~~~l~~L~~~~--l~~~~i-E--qPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
.+..+.+|+..|+..+.+-- -..|+++++.+..+.+.... +|+... | +|-...+++.+-+.-+.+++.+++
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~v 187 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPV 187 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCC
Confidence 34567778877665544432 23788898888888776432 221111 2 343334564332222233446789
Q ss_pred eEEEcCC--CCCHHHHHHHHHcCCccEEEec
Q 013681 306 SVVADES--CRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 306 PIa~dEs--l~~~~d~~~ll~~~a~d~i~lk 334 (438)
||..=|. -.+.++++.+.+. .+|+|.+.
T Consensus 188 PVivK~~g~g~s~~~a~~l~~~-Gvd~I~Vs 217 (352)
T PRK05437 188 PVIVKEVGFGISKETAKRLADA-GVKAIDVA 217 (352)
T ss_pred CEEEEeCCCCCcHHHHHHHHHc-CCCEEEEC
Confidence 9997654 2456777777765 58998873
No 324
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=44.16 E-value=3.1e+02 Score=26.63 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC-CeE
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISV 307 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPI 307 (438)
..+++...++++++.+.+.....|=+.+-.-..+...++.+.+++..+ +||
T Consensus 147 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l 198 (273)
T cd07941 147 KANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPL 198 (273)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 346677777777777666542344444444444445544444433333 444
No 325
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.98 E-value=3.1e+02 Score=26.60 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+.+ +.+++.+.+=. ++.+.++++++++..++.+..
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv-~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGV-GANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEE-ESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecC-cchhHHHHHHHHHHHhhcCce
Confidence 66777888999999999887765432 23444455666666 45677777632 344889999999999998875
Q ss_pred CceEecCCCC-CCh----hhHHHHHHhhccccCCeEEEcC------CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHH
Q 013681 277 PVLFEQPVHR-DDW----SGLHDVSNFARDTYGISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (438)
Q Consensus 277 ~~~iEqPl~~-~d~----~~~a~L~~~~r~~~~iPIa~dE------sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~ 344 (438)
-..+--|... .+. +-++.+++ .+++||..=. ...+.+.+.++.+ .+.++-+|.+- | +....
T Consensus 99 ~v~v~~P~~~~~s~~~l~~y~~~ia~----~~~~pi~iYn~P~~tg~~ls~~~l~~L~~--~~nv~giK~s~-~~~~~~~ 171 (289)
T PF00701_consen 99 AVLVIPPYYFKPSQEELIDYFRAIAD----ATDLPIIIYNNPARTGNDLSPETLARLAK--IPNVVGIKDSS-GDLERLI 171 (289)
T ss_dssp EEEEEESTSSSCCHHHHHHHHHHHHH----HSSSEEEEEEBHHHHSSTSHHHHHHHHHT--STTEEEEEESS-SBHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHh----hcCCCEEEEECCCccccCCCHHHHHHHhc--CCcEEEEEcCc-hhHHHHH
Confidence 3456777632 222 33344543 6889987632 2334556677766 67899999755 5 65555
Q ss_pred HHHHHHHHcCCeEEEc
Q 013681 345 QIIKATRKSGLHLMID 360 (438)
Q Consensus 345 ~~~~~A~~~gi~~~~~ 360 (438)
++.... ..++.++.+
T Consensus 172 ~~~~~~-~~~~~v~~G 186 (289)
T PF00701_consen 172 QLLRAV-GPDFSVFCG 186 (289)
T ss_dssp HHHHHS-STTSEEEES
T ss_pred HHhhhc-ccCeeeecc
Confidence 544332 245666655
No 326
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.94 E-value=1.6e+02 Score=29.97 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCHH---HHHHHHHcCCccEEEecCCcch--HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 304 GISVVADESCRSLN---DVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 304 ~iPIa~dEsl~~~~---d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
.+-|..|-.+.... -.++.|+.....+-+-|-.++- +....+.++.|++.+...++.---+|..-.+-++.|-+.
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~As 151 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLAS 151 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhc
Confidence 34566665544333 3466777776666555554442 333444555667776666554323565555556667777
Q ss_pred cCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
-++..+.|+.+|-.-+......+ ----+.+|+..|.|-|.-.-++=.|.
T Consensus 152 n~~~eflDyvg~pigk~~~~s~p---~lPLiAipTTaGTgSEtT~~AI~d~e 200 (465)
T KOG3857|consen 152 NGEGEFLDYVGPPIGKVKQSSKP---LLPLIAIPTTAGTGSETTRFAIIDYE 200 (465)
T ss_pred CCCccchhccCCccccccccccc---ccceEecccCCCccccceeeEEecch
Confidence 78788888877432111111111 12237789999999987766665554
No 327
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.93 E-value=3.6e+02 Score=27.36 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
.+.++..+.++.+.+.|+..|-+-+...-+.|.+.++.+++..++.++..=+ ....++ + +...+.++....+=-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~d-i---~~a~~~g~~~i~i~~ 93 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWC--RARDAD-I---EAAARCGVDAVHISI 93 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEc--CCCHHH-H---HHHHcCCcCEEEEEE
Confidence 3678888888899999999988855433466778899998876665554322 122332 2 233333332123333
Q ss_pred CCCCC------------ChhhHHHHHHhhccccCCeEEE---cCCCCCHHHH----HHHHHcCCccEEEecCCcch---H
Q 013681 283 PVHRD------------DWSGLHDVSNFARDTYGISVVA---DESCRSLNDV----QKVMQENLASVVNIKLAKFG---V 340 (438)
Q Consensus 283 Pl~~~------------d~~~~a~L~~~~r~~~~iPIa~---dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~G---i 340 (438)
|+... .++.+.+..+.+++ .+..+.. |.+-.+++.+ +.+.+. .++.|.+.=+. | .
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~-~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~-Ga~~i~l~DT~-G~~~P 170 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARD-RGLFVSVGGEDASRADPDFLVELAEVAAEA-GADRFRFADTV-GILDP 170 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh-CCCEEEEeecCCCCCCHHHHHHHHHHHHHc-CcCEEEEcccC-CCCCH
Confidence 54320 12222222222222 3444433 2333444444 333444 36666665443 4 3
Q ss_pred HHHHHHHHHH-HHcCCeEEEccCCchhHHHH
Q 013681 341 LGTLQIIKAT-RKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 341 ~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~ 370 (438)
....+++... +..++++-+|+-...+++.+
T Consensus 171 ~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~A 201 (365)
T TIGR02660 171 FSTYELVRALRQAVDLPLEMHAHNDLGMATA 201 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCChHHH
Confidence 4455555554 44578888887655555544
No 328
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=43.73 E-value=3.7e+02 Score=27.35 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=74.4
Q ss_pred HHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE--------EeC----C-CCC-CHHHHHHHHHHh
Q 013681 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI--------LDA----N-EGY-TSEEAVEVLGKL 270 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~--------vDA----N-~~~-s~~~A~~~l~~L 270 (438)
+.+..+.||+.+=+.... ++++++++.+.+-+. +- +.+|- ++. + ..| +|++|.+|.+++
T Consensus 116 ~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t 195 (345)
T cd00946 116 FKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEAL 195 (345)
T ss_pred HHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHh
Confidence 445567899999887664 789999988888651 21 12221 111 1 236 599999999986
Q ss_pred ------hh----CC-CCCceE-ecCCCCCChhhHHHHHHhhcccc------CCeEEEc-CCCCCHHHHHHHHHcCCccEE
Q 013681 271 ------ND----MG-VIPVLF-EQPVHRDDWSGLHDVSNFARDTY------GISVVAD-ESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 271 ------~~----~~-l~~~~i-EqPl~~~d~~~~a~L~~~~r~~~------~iPIa~d-Esl~~~~d~~~ll~~~a~d~i 331 (438)
.- +| .|=.|- .+| .-|++-++++.+.+++.+ ++|+.+- =|=.+.++++++++.+ +.=+
T Consensus 196 ~~~tgvD~LAvaiGt~HG~Y~~~~p--~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G-I~Ki 272 (345)
T cd00946 196 SKISPNFSIAAAFGNVHGVYKPGNV--KLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG-VVKM 272 (345)
T ss_pred ccCCCceeeeeeccccccCCCCCCC--ccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC-CeeE
Confidence 11 11 120122 333 347888888855444444 6887654 4777778889898876 4446
Q ss_pred EecC
Q 013681 332 NIKL 335 (438)
Q Consensus 332 ~lk~ 335 (438)
|+.-
T Consensus 273 Ni~T 276 (345)
T cd00946 273 NIDT 276 (345)
T ss_pred EeCc
Confidence 6654
No 329
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=43.55 E-value=3.2e+02 Score=27.50 Aligned_cols=124 Identities=12% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-CCCch---HH----HHHHHHHHhhCCCcEEEEeCCC--CCCHHHHHHHHHHhhh
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-GRNIT---AD----FDVLQAIHAVHPHCSFILDANE--GYTSEEAVEVLGKLND 272 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-G~d~~---~d----i~~l~aiR~~~~~~~L~vDAN~--~~s~~~A~~~l~~L~~ 272 (438)
+||.+.... +-.+.|-..|-++. +.+.+ .. .+.++.|.+ .-++.|.||.-+ .=+++-..+-++.++.
T Consensus 75 ~~p~~~Ak~--q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~e-avd~PL~Id~s~n~~kD~evleaale~~~g 151 (319)
T PRK04452 75 NDPAAWAKK--CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQ-AVDVPLIIGGSGNPEKDAEVLEKVAEAAEG 151 (319)
T ss_pred cCHHHHHHH--HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHH-hCCCCEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 456655432 22267888888884 44432 11 223444433 257889999644 5566655566666665
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH---HHHHHcCCc--cEEEecCCcc
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV---QKVMQENLA--SVVNIKLAKF 338 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~---~~ll~~~a~--d~i~lk~~~~ 338 (438)
.+.-+.. ...++++.+..|+. +.+.|+..- +..+++.+ -..+....+ +=|.+||.-.
T Consensus 152 ~~pLInS----at~en~~~i~~lA~----~y~~~Vva~-s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~ 213 (319)
T PRK04452 152 ERCLLGS----AEEDNYKKIAAAAM----AYGHAVIAW-SPLDINLAKQLNILLTELGVPRERIVMDPTTG 213 (319)
T ss_pred CCCEEEE----CCHHHHHHHHHHHH----HhCCeEEEE-cHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcc
Confidence 4321222 23446888888875 577776542 11222222 222333334 5577777655
No 330
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=43.21 E-value=3.7e+02 Score=27.22 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHhhcC-CcEEEEecCCC----chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCC-
Q 013681 203 VSPAEASELASKYCKLG-FSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGV- 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~G-f~~iKlKvG~d----~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l- 275 (438)
.+++++.+.|++..+.| ++..=+--|.+ +++-.+.++.|++... +++.+=. |-++.+++.++.++ +..|+.
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~-le~c~sl-G~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG-LEVCASL-GMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC-cHHhhcc-CCCCHHHHHHHHHcChhheecc
Confidence 47899999999999999 55555544543 3444445555554222 3333322 36777777666554 333432
Q ss_pred ---CCceEecCCCCCChhhHHHHHHhhcc-----ccCCeEEEcCCCCCHHHHHHHHHcCC-ccEEEec-----C-Ccc--
Q 013681 276 ---IPVLFEQPVHRDDWSGLHDVSNFARD-----TYGISVVADESCRSLNDVQKVMQENL-ASVVNIK-----L-AKF-- 338 (438)
Q Consensus 276 ---~~~~iEqPl~~~d~~~~a~L~~~~r~-----~~~iPIa~dEsl~~~~d~~~ll~~~a-~d~i~lk-----~-~~~-- 338 (438)
...+.+.=++...|++--.-.+.+|+ -++.=+.++|+..+.-++...|..-. +|-|-+- + +..
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcccc
Confidence 12355555555555543332222221 24666888999888665544443333 5554332 1 111
Q ss_pred ---h-HHHHHHHHHHHHHcCCeE
Q 013681 339 ---G-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 339 ---G-i~~~~~~~~~A~~~gi~~ 357 (438)
. ..+.++++++++-.-=..
T Consensus 242 ~~~~~~~e~lk~IA~~Ri~~P~~ 264 (335)
T COG0502 242 AKPLDPFEFLKTIAVARIIMPKS 264 (335)
T ss_pred CCCCCHHHHHHHHHHHHHHCCcc
Confidence 2 677899999998764333
No 331
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.07 E-value=3e+02 Score=26.21 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCeEEEccC
Q 013681 341 LGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
....+++.+|+++|+.+.+...
T Consensus 133 ~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 133 EGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCEEEEEec
Confidence 3467788999999999998764
No 332
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=43.03 E-value=86 Score=31.03 Aligned_cols=67 Identities=24% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc----hHHHHHHHHHHhhCCCcEEEE------e---CCCCCCHHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFIL------D---ANEGYTSEEAVEVLGK 269 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~----~~di~~l~aiR~~~~~~~L~v------D---AN~~~s~~~A~~~l~~ 269 (438)
.+++++.+.+++..+.|++.|-+--|.++ +.=.+.++.|++.++++.+.. | .+.+.+.++.++.++.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~Lke 115 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKK 115 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 48899999998888899999999755333 333667888888888766541 1 2455555554444443
No 333
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=42.85 E-value=1.5e+02 Score=32.29 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=44.8
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-H----------------------HHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V----------------------LGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i----------------------~~~~~~~~~A~~~gi~~~ 358 (438)
..++|+.+|=... +.-....++ .++-+.+.|..+| - .....+++.|+++|+++-
T Consensus 82 G~~iPLVADIHF~-~~~A~~a~~--~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iR 158 (611)
T PRK02048 82 GYMVPLVADVHFN-PKVADVAAQ--YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIR 158 (611)
T ss_pred CCCCCEEEecCCC-cHHHHHHHH--hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 3689999996644 343444554 4899999998886 3 456779999999999999
Q ss_pred EccCCc
Q 013681 359 IDGMIE 364 (438)
Q Consensus 359 ~~s~~e 364 (438)
++...+
T Consensus 159 IGvN~G 164 (611)
T PRK02048 159 IGVNHG 164 (611)
T ss_pred EecCCc
Confidence 886543
No 334
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.79 E-value=3.1e+02 Score=26.30 Aligned_cols=147 Identities=9% Similarity=0.118 Sum_probs=81.6
Q ss_pred HHHHHHHhhcCCcEEEE-ecCC---CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH-hhhCCCCCceEecC
Q 013681 209 SELASKYCKLGFSTLKL-NVGR---NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQP 283 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKl-KvG~---d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~-L~~~~l~~~~iEqP 283 (438)
.+.++.+.++|++.+-+ .+.. .-..+.+.++.+.+. .++.+.++. +--+.+++.+++.. .+...+....+|+|
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 34567788889876654 2322 234577888888775 356677766 55577887777643 22211221234444
Q ss_pred CCCCChhhHHHHHHhhccccCCeEEEc------------------CCCCCHHHHHHHH-HcCCccEEEecCCcch-HHH-
Q 013681 284 VHRDDWSGLHDVSNFARDTYGISVVAD------------------ESCRSLNDVQKVM-QENLASVVNIKLAKFG-VLG- 342 (438)
Q Consensus 284 l~~~d~~~~a~L~~~~r~~~~iPIa~d------------------Esl~~~~d~~~ll-~~~a~d~i~lk~~~~G-i~~- 342 (438)
+.+.++.+... ...+++++| .+-.++.++.+.+ +.+.-.++..+..+.| ..+
T Consensus 111 ------~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~ 183 (258)
T PRK01033 111 ------DLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY 183 (258)
T ss_pred ------HHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC
Confidence 34455543221 123666666 1233455664444 4444445556666665 333
Q ss_pred -HHHHHHHHHHcCCeEEEccCCc
Q 013681 343 -TLQIIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 343 -~~~~~~~A~~~gi~~~~~s~~e 364 (438)
...+.++++..++++..++-..
T Consensus 184 d~~~i~~~~~~~~ipvIasGGv~ 206 (258)
T PRK01033 184 DLELLKSFRNALKIPLIALGGAG 206 (258)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCC
Confidence 3444566777899998877543
No 335
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=42.59 E-value=3.5e+02 Score=26.78 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC-chHH-HHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITAD-FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~d-i~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
.+++++.+.++.+.+.|.+.|.+--|-+ +..| .+.++.+++..+...+.+-.|+..- ++ .++.|.+.++
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll-~~---~~~~L~~agl 119 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLL-AR---RAAALKDAGL 119 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhH-HH---HHHHHHHcCC
Confidence 4678888888877788998888865632 2223 3456667665445678999998653 22 4555555554
No 336
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=41.71 E-value=1.2e+02 Score=31.03 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC-----CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR-----NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~-----d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
.+++++.+.++...+.|.+.|.+--|. +++.=.+.+++|++.+|++.+. +| ..+.++. +.|++.|+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~--~g-~lt~e~l----~~Lk~aGv 174 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIE--VQ-PLSEEEY----AELVELGL 174 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceec--cC-CCCHHHH----HHHHHcCC
Confidence 478999999999889999999887664 2344456677777777765553 33 4566553 45555554
No 337
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=41.53 E-value=49 Score=34.25 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCC----CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~----~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
++-..+++..++ +....|+|-|..+ .|++.+++++. +.++.|..|+.+-++ -+.+.+..+ +|++.--.+
T Consensus 150 ~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~----~~g~~vvVDnTf~~p-~~~~pL~lG-ADIV~hSaT 222 (409)
T KOG0053|consen 150 DDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDNTFGSP-YNQDPLPLG-ADIVVHSAT 222 (409)
T ss_pred hhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHh----hCCCEEEEeCCcCcc-cccChhhcC-CCEEEEeee
Confidence 333455555655 3233699999865 58888888885 689999999999987 345666654 788776655
Q ss_pred c
Q 013681 337 K 337 (438)
Q Consensus 337 ~ 337 (438)
|
T Consensus 223 K 223 (409)
T KOG0053|consen 223 K 223 (409)
T ss_pred e
Confidence 5
No 338
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.47 E-value=3.4e+02 Score=26.37 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+++.|.+.+=+--.. ..++=.+.++.+++. .+++.+.+=+.. -+.+++++.++..++.+..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCC
Confidence 67778888999999999888764321 234445566777774 445676654443 4789999999999998865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhccccCCeEEEcC------CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTL 344 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~~iPIa~dE------sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~ 344 (438)
-..+=-|.. ..+ ++-+.++++ .+++||.+=. ...+.+.++++. ..+.++-+|-+- | +....
T Consensus 99 ~v~~~pP~~~~~~~~~i~~~~~~ia~----~~~~pv~lYn~P~~~g~~l~~~~~~~L~--~~p~v~giK~s~-~d~~~~~ 171 (292)
T PRK03170 99 GALVVTPYYNKPTQEGLYQHFKAIAE----ATDLPIILYNVPGRTGVDILPETVARLA--EHPNIVGIKEAT-GDLERVS 171 (292)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHh----cCCCCEEEEECccccCCCCCHHHHHHHH--cCCCEEEEEECC-CCHHHHH
Confidence 334555542 111 233444553 5678887542 124566667774 347888888654 4 55555
Q ss_pred HHH
Q 013681 345 QII 347 (438)
Q Consensus 345 ~~~ 347 (438)
++.
T Consensus 172 ~~~ 174 (292)
T PRK03170 172 ELI 174 (292)
T ss_pred HHH
Confidence 543
No 339
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.21 E-value=3.2e+02 Score=25.93 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=72.6
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-C-CcEEEEeC-CC------CCCH--HHH
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDA-NE------GYTS--EEA 263 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-~~~L~vDA-N~------~~s~--~~A 263 (438)
|+-...++.+.+++ +++.+.|...+ =+|...-+|.+.++.+.+.+ + .+.+.+|+ .+ +|.. -..
T Consensus 75 ~v~vGGGIrs~e~~----~~~l~~Ga~kv--vigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~ 148 (232)
T PRK13586 75 WIQVGGGIRDIEKA----KRLLSLDVNAL--VFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEV 148 (232)
T ss_pred CEEEeCCcCCHHHH----HHHHHCCCCEE--EECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCH
Confidence 33344455676654 55667786654 56754456778888888764 4 57888999 22 3521 134
Q ss_pred HHHHHHhhhCCCCCceEecCCCCC------ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRD------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+++++++++++. .+|=.-+..+ |++.++.+++ . +.|+...=-+.+.+|+.++.+. .++.+.+
T Consensus 149 ~e~~~~l~~~g~~-~ii~tdI~~dGt~~G~d~el~~~~~~----~-~~~viasGGv~s~~Dl~~l~~~-G~~gviv 217 (232)
T PRK13586 149 IDGIKKVNELELL-GIIFTYISNEGTTKGIDYNVKDYARL----I-RGLKEYAGGVSSDADLEYLKNV-GFDYIIV 217 (232)
T ss_pred HHHHHHHHhcCCC-EEEEecccccccCcCcCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHC-CCCEEEE
Confidence 4677777777653 3444444332 5555666653 2 2333334456777787777654 3554443
No 340
>PRK09389 (R)-citramalate synthase; Provisional
Probab=41.00 E-value=4e+02 Score=28.43 Aligned_cols=105 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
|.+|+ |+.++-+++++.|.+.|++ .||=-.+.-.......+.+.........|+.-=... ..|++.+++.+..
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~-~~di~~a~~~g~~ 88 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVD--VIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAV-KVDIDAALECDVD 88 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCC--EEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccC-HHHHHHHHhCCcC
Q ss_pred cE-EEecCCcc-----------h-HHHHHHHHHHHHHcCCeEEEc
Q 013681 329 SV-VNIKLAKF-----------G-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 329 d~-i~lk~~~~-----------G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
-+ +-++.+-. - +..+.+.+++|+++|+.+.++
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~ 133 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS 133 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE
No 341
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=40.95 E-value=4.4e+02 Score=27.50 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=43.8
Q ss_pred HHHHHCCCCHHHHhCCCCCceeeeeeeCCCC-HHHH-HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCC--Cc
Q 013681 174 AVANSIDIPLWRLFGGASNSLSTAITIPAVS-PAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHP--HC 248 (438)
Q Consensus 174 l~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~-~~~~-~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~--~~ 248 (438)
++.+..+.|+-.||-|.+ .++... ++++ ...+++..+.|-..|.+-=.- |+..=...++++++.|. +.
T Consensus 71 lk~~~~nT~LQMLlRGQN-------lvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~ 143 (472)
T COG5016 71 LKKAVPNTKLQMLLRGQN-------LVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQG 143 (472)
T ss_pred HHHhCCCcHHHHHHccCc-------cccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEE
Confidence 444455556656665542 112211 2222 344555556666665554221 22211223444444442 33
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
.+.-+-.-.-+.+.-++++++|.+.+++
T Consensus 144 ~i~YT~sPvHt~e~yv~~akel~~~g~D 171 (472)
T COG5016 144 TISYTTSPVHTLEYYVELAKELLEMGVD 171 (472)
T ss_pred EEEeccCCcccHHHHHHHHHHHHHcCCC
Confidence 4444444455555555666666665554
No 342
>PRK06256 biotin synthase; Validated
Probab=40.81 E-value=2.4e+02 Score=28.01 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEcc
Q 013681 340 VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s 361 (438)
....++.++.|++.|+.+..+.
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCe
Confidence 6667777888888888765543
No 343
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=40.06 E-value=2.4e+02 Score=28.66 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=39.7
Q ss_pred ccCCeEEEcC-CCCC-----HHH--------HHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRS-----LND--------VQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~-----~~d--------~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+ .+. +++.++. .++-+++|-|..= +.-++++.++|+.+|+.+-
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~-GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVE 158 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEP-LFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLE 158 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccC-CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788988763 3334 222 2223333 4888999999872 7789999999999999874
No 344
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=39.86 E-value=4.3e+02 Score=27.00 Aligned_cols=137 Identities=15% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC-chHHH-HHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN-ITADF-DVLQAIHAVHPHC-SFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~di-~~l~aiR~~~~~~-~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
.+.+++.+.++.+.+.|.+.|.+--|-+ +..|+ +.++.+++. +++ .+.+..||..-.+.+ +.|.+.++. +
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~-~gi~~i~itTNG~lL~~~~----~~L~~aGld--~ 162 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSL-KGLKTLAMTTNGITLSRKL----PRLKEAGLT--S 162 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhc-CCCceEEEeeCcchHHHHH----HHHHhCCCC--e
Confidence 4678888888888788988888876632 34454 355666664 344 588899997754443 444444432 2
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-h--HHHHHHHHHHHHHcCCe
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G--VLGTLQIIKATRKSGLH 356 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-G--i~~~~~~~~~A~~~gi~ 356 (438)
|-==+..-+.+.+.+++. ..+ .+. -...++.+.+.+. .-+.+....+ | ..+..++++++++.|+.
T Consensus 163 VnISLDsl~~e~~~~itr----~~~----~~~---vl~~I~~a~~~G~-~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~ 230 (373)
T PLN02951 163 LNISLDTLVPAKFEFLTR----RKG----HDR---VLESIDTAIELGY-NPVKVNCVVMRGFNDDEICDFVELTRDKPIN 230 (373)
T ss_pred EEEeeccCCHHHHHHHhc----CCC----HHH---HHHHHHHHHHcCC-CcEEEEEEecCCCCHHHHHHHHHHHHhCCCe
Confidence 222222334455666642 111 011 1223344555442 1122222222 5 56788889999998877
Q ss_pred EE
Q 013681 357 LM 358 (438)
Q Consensus 357 ~~ 358 (438)
+.
T Consensus 231 vr 232 (373)
T PLN02951 231 VR 232 (373)
T ss_pred EE
Confidence 64
No 345
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=39.69 E-value=35 Score=32.71 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=35.2
Q ss_pred CHHHHHHHHHcCCccEEEecCCcch---HHH---HHHHHHHHHHcCCeEEEccC-Cch
Q 013681 315 SLNDVQKVMQENLASVVNIKLAKFG---VLG---TLQIIKATRKSGLHLMIDGM-IET 365 (438)
Q Consensus 315 ~~~d~~~ll~~~a~d~i~lk~~~~G---i~~---~~~~~~~A~~~gi~~~~~s~-~es 365 (438)
++..++.+++.-+.-+=.+|.+. | +.+ .++.+++|+++||.+++++. +|-
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~-Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~ 66 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGW-GTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEI 66 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecC-ceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHH
Confidence 67777888876444333456544 3 444 78999999999999999973 353
No 346
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=39.58 E-value=4.3e+02 Score=26.92 Aligned_cols=133 Identities=15% Similarity=0.192 Sum_probs=77.0
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC--------CchHHHHHHHHHHhh----CC--CcEEEE------
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HP--HCSFIL------ 252 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l~aiR~~----~~--~~~L~v------ 252 (438)
+|+..-+... +++. +.+.++.||+.+=+.-.. ++++++++-+.+-+. +- +.+|-.
T Consensus 74 VPValHLDHg~~~e~----i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~ 149 (347)
T TIGR01521 74 IPVVMHQDHGNSPAT----CQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLET 149 (347)
T ss_pred CcEEEECCCCCCHHH----HHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccc
Confidence 5555444433 4443 444578999999998764 688999988777651 21 223321
Q ss_pred ------eC---------CCCC-CHHHHHHHHHHhhh------CC-CCCceEe--cCC-CCCChhhHHHHHHhhcccc-CC
Q 013681 253 ------DA---------NEGY-TSEEAVEVLGKLND------MG-VIPVLFE--QPV-HRDDWSGLHDVSNFARDTY-GI 305 (438)
Q Consensus 253 ------DA---------N~~~-s~~~A~~~l~~L~~------~~-l~~~~iE--qPl-~~~d~~~~a~L~~~~r~~~-~i 305 (438)
|- ...| +|++|.+|.++..- .| .|=.|-. +|- +.-|++-++++++ .+ ++
T Consensus 150 ~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~----~v~~v 225 (347)
T TIGR01521 150 GMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHA----RLPDT 225 (347)
T ss_pred cccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHc----cCCCC
Confidence 21 1226 49999999986431 11 1211333 352 1236777777764 57 69
Q ss_pred eEEEcC-CCCC---------------------HHHHHHHHHcCCccEEEecC
Q 013681 306 SVVADE-SCRS---------------------LNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 306 PIa~dE-sl~~---------------------~~d~~~ll~~~a~d~i~lk~ 335 (438)
|+++-= |=.. .++++++++.+ +.=||+.-
T Consensus 226 PLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G-I~KVNi~T 276 (347)
T TIGR01521 226 HLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG-VRKVNIDT 276 (347)
T ss_pred CEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC-CeeEEeCh
Confidence 987765 3332 35677777665 44456554
No 347
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=39.25 E-value=1.4e+02 Score=28.79 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEec------CCCC--CChhhHHHH---HHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQ------PVHR--DDWSGLHDV---SNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq------Pl~~--~d~~~~a~L---~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
++.++|++.+..+.+-|.+ +|.= |-.. ..-+++.++ -+.+++..++||+.|= .+++-++..++.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAd--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT--~~~~v~e~al~~G 96 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGAD--IIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDT--FRAEVARAALEAG 96 (257)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeC--CCHHHHHHHHHhC
Confidence 4566666666666555543 3432 1110 112233332 2333345689999983 4566778889875
Q ss_pred CccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 327 LASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 327 a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
.++|| +.+ |...-.+++.++.++|.++++-.
T Consensus 97 -~~iIN-dis--g~~~~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 97 -ADIIN-DVS--GGSDDPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred -CCEEE-eCC--CCCCChHHHHHHHHcCCCEEEEC
Confidence 77665 221 32111577889999999988743
No 348
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=39.20 E-value=3.8e+02 Score=26.17 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHhh-cCCcEEEEecCCCchHHHHHHHHHHhhCCCcE---------EEEeCCCCC-----C---HHHHH
Q 013681 203 VSPAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIHAVHPHCS---------FILDANEGY-----T---SEEAV 264 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~-~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~---------L~vDAN~~~-----s---~~~A~ 264 (438)
.++++..+.+.++++ .|-..+|+.-| .+-.++++++.+.+-.+. .+.| ++| + .++++
T Consensus 89 ~~~e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~--ggy~~qgrt~~~a~~~i 163 (263)
T TIGR00222 89 ATPEQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTERGVPVVGHLGLTPQSVNIL--GGYKVQGKDEEAAKKLL 163 (263)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCCCCEEEecCCCceeEeec--CCeeecCCCHHHHHHHH
Confidence 357777777777666 89999999976 334567777777542222 3333 333 3 34667
Q ss_pred HHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
+.++++++.+....++|-.- .+..+++++ +.++|+.
T Consensus 164 ~~A~a~e~AGA~~ivlE~vp----~~~a~~It~----~l~iP~i 199 (263)
T TIGR00222 164 EDALALEEAGAQLLVLECVP----VELAAKITE----ALAIPVI 199 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCc----HHHHHHHHH----hCCCCEE
Confidence 77778888775423444433 256677775 6788864
No 349
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=39.13 E-value=2.6e+02 Score=27.60 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=75.8
Q ss_pred ceeeeeeeCC-CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh----hCC--CcEE--------EEeC--
Q 013681 193 SLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA----VHP--HCSF--------ILDA-- 254 (438)
Q Consensus 193 ~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~----~~~--~~~L--------~vDA-- 254 (438)
++|+...+.. .+.+. +.+.++.||+.+=+.... +++++++.-+.+-+ .+- +.+| .++.
T Consensus 73 ~vPValHLDH~~~~e~----i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~ 148 (287)
T PF01116_consen 73 SVPVALHLDHGKDFED----IKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEE 148 (287)
T ss_dssp TSEEEEEEEEE-SHHH----HHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSST
T ss_pred CCCEEeecccCCCHHH----HHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccc
Confidence 3555444433 24443 444567799999888775 78888888777765 221 1122 1122
Q ss_pred --CCCC-CHHHHHHHHHHhhh------CC-CCCceEecCCCCCChhhHHHHHHhhcccc-CCeEEEcC-CCCCHHHHHHH
Q 013681 255 --NEGY-TSEEAVEVLGKLND------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADE-SCRSLNDVQKV 322 (438)
Q Consensus 255 --N~~~-s~~~A~~~l~~L~~------~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-~iPIa~dE-sl~~~~d~~~l 322 (438)
...| +|++|.+|.++..- .| .|=.|=.-.-+.-|++-++++++ .+ ++|+++-= |=...++++++
T Consensus 149 ~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~----~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 149 ETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIRE----AVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp T-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHH----HHHTSEEEESSCTTS-HHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHH----hcCCCCEEEECCCCCCHHHHHHH
Confidence 2235 49999999987541 11 11001120023347888888876 57 99998764 66677789999
Q ss_pred HHcCCccEEEec
Q 013681 323 MQENLASVVNIK 334 (438)
Q Consensus 323 l~~~a~d~i~lk 334 (438)
++.+ +.=||+.
T Consensus 225 i~~G-i~KiNi~ 235 (287)
T PF01116_consen 225 IKNG-ISKINIG 235 (287)
T ss_dssp HHTT-EEEEEES
T ss_pred HHcC-ceEEEEe
Confidence 9876 4445554
No 350
>PTZ00413 lipoate synthase; Provisional
Probab=39.11 E-value=4.6e+02 Score=27.16 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecC-C-Cc-----hHHHHHHHHHHhhCCCcEEEE---eCCCCCCHHHHHHHHHHh-
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVG-R-NI-----TADFDVLQAIHAVHPHCSFIL---DANEGYTSEEAVEVLGKL- 270 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG-~-d~-----~~di~~l~aiR~~~~~~~L~v---DAN~~~s~~~A~~~l~~L- 270 (438)
..|+++..+.|+...+.|.+.+-|--| . |+ +.=.+.+++||+..|++.+-+ |.-+ +. ++++.+...
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g--~~-e~l~~L~eAG 252 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHG--DL-KSVEKLANSP 252 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCcccc--CH-HHHHHHHhcC
Confidence 358899988898888899876654444 2 22 233455677777556554433 4333 33 344444332
Q ss_pred -hhCCCCCceEecC---CC--CCChhhHHHHHHhhcc--------ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe---
Q 013681 271 -NDMGVIPVLFEQP---VH--RDDWSGLHDVSNFARD--------TYGISVVADESCRSLNDVQKVMQENLASVVNI--- 333 (438)
Q Consensus 271 -~~~~l~~~~iEqP---l~--~~d~~~~a~L~~~~r~--------~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l--- 333 (438)
+-|+.+++-.|.= +. ..+|+..-++-+.+++ .+++=|.+||+...+.++..-|....+|++.+
T Consensus 253 ~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQY 332 (398)
T PTZ00413 253 LSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQY 332 (398)
T ss_pred CCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccc
Confidence 2233221222221 22 2355544333222222 23555678888777777655566667877776
Q ss_pred -cCCcc--------hHHHHHHHHHHHHHcCCeEEEccCC
Q 013681 334 -KLAKF--------GVLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 334 -k~~~~--------Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
-|++- -..+..++.+.|.+.|...+.++.+
T Consensus 333 L~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPl 371 (398)
T PTZ00413 333 LQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPL 371 (398)
T ss_pred cCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCc
Confidence 44432 1345788889999999988776643
No 351
>PRK07360 FO synthase subunit 2; Reviewed
Probab=39.04 E-value=84 Score=32.11 Aligned_cols=71 Identities=27% Similarity=0.341 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc-----hHHHHHHHHHHhhCCCcEEEE-eC--------CCCCCHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI-----TADFDVLQAIHAVHPHCSFIL-DA--------NEGYTSEEAVEVLG 268 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~-----~~di~~l~aiR~~~~~~~L~v-DA--------N~~~s~~~A~~~l~ 268 (438)
.+++++.+.+++..+.|.+.|-+--|.++ +.=.+.++.|++.+|++.+.. .+ +.+.+.++ .++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e---~l~ 167 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE---VLK 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH---HHH
Confidence 37899999999999999999999966432 233567788887777765542 11 44555555 444
Q ss_pred HhhhCCCC
Q 013681 269 KLNDMGVI 276 (438)
Q Consensus 269 ~L~~~~l~ 276 (438)
+|++.|+.
T Consensus 168 ~LkeAGld 175 (371)
T PRK07360 168 ALKDAGLD 175 (371)
T ss_pred HHHHcCCC
Confidence 55555654
No 352
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=38.90 E-value=1.8e+02 Score=29.30 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC----chHHHHHHHHHHhhCCCcEEEEeC---------CCCCCHHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFILDA---------NEGYTSEEAVEVLGK 269 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----~~~di~~l~aiR~~~~~~~L~vDA---------N~~~s~~~A~~~l~~ 269 (438)
.+++++.+.+++..+.|.+.|-+--|.+ ++.=.+.++.|++.++++.+..-. +.+...+ +.+++
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~---e~l~~ 146 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVE---EALKR 146 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHH---HHHHH
Confidence 4899999999999999999999986632 333356788888888877765421 2233333 45556
Q ss_pred hhhCCCC
Q 013681 270 LNDMGVI 276 (438)
Q Consensus 270 L~~~~l~ 276 (438)
|++.|+.
T Consensus 147 LkeAGl~ 153 (343)
T TIGR03551 147 LKEAGLD 153 (343)
T ss_pred HHHhCcc
Confidence 6666654
No 353
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.86 E-value=2e+02 Score=26.34 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=44.4
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-H-------HHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V-------LGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i-------~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
+.++.|++|.--.+...+..+. ...+|+|-+|.+.+- + .-...+..+|+..|+.+...+ +|+.
T Consensus 144 ~~G~~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g-Ve~~ 214 (241)
T smart00052 144 ELGVRIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG-VETP 214 (241)
T ss_pred HCCCEEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec-CCCH
Confidence 3678888887555555555444 446999999986653 3 235667899999999999877 4663
No 354
>PRK08444 hypothetical protein; Provisional
Probab=38.83 E-value=1.5e+02 Score=30.20 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC----chHHHHHHHHHHhhCCCcEEE
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFI 251 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----~~~di~~l~aiR~~~~~~~L~ 251 (438)
.+++++.+.+++..+.|.+.|=+--|.+ ++.=.+.++.|++.+|++.+.
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~ 132 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVK 132 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEe
Confidence 3789999999999999999999987742 344456788888888876554
No 355
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.54 E-value=3.4e+02 Score=25.55 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH--HHhhhC---CCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL--GKLNDM---GVIP 277 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l--~~L~~~---~l~~ 277 (438)
.+|+.. ++.+.+.|-..+-+..-.....=.+.++.+++.+ ..+.|..|..++.++..+++ ..++.. .+++
T Consensus 75 ~~p~~~---i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~p 149 (228)
T PTZ00170 75 SNPEKW---VDDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEP 149 (228)
T ss_pred CCHHHH---HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCCCHHHHHHHHccchhhhHHhhhccc
Confidence 455544 4566678988888887543211234566677655 67788889999888877765 333221 1110
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-+=.|++.+..++..+++++. ...+.|+.|=. ++.+.+..+.+.+ +|++++=
T Consensus 150 G~~gq~~~~~~~~ki~~~~~~---~~~~~I~VdGG-I~~~ti~~~~~aG-ad~iVvG 201 (228)
T PTZ00170 150 GFGGQSFMHDMMPKVRELRKR---YPHLNIQVDGG-INLETIDIAADAG-ANVIVAG 201 (228)
T ss_pred CCCCcEecHHHHHHHHHHHHh---cccCeEEECCC-CCHHHHHHHHHcC-CCEEEEc
Confidence 112344433333444444431 11245555544 3455666666654 5766654
No 356
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=38.34 E-value=1.5e+02 Score=31.15 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHhhc--CCcEEEEec-CC---CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHH
Q 013681 203 VSPAEASELASKYCKL--GFSTLKLNV-GR---NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVE 265 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~--Gf~~iKlKv-G~---d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~ 265 (438)
.+++++.+.++++.+. +.+.+-+-- |- .++.+++.++.+++.++++.+.|+.||-..++.+.+
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~ 128 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDR 128 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHH
Confidence 4788888877776543 455555543 32 245678999999998889999999999776554433
No 357
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=38.29 E-value=3.3e+02 Score=25.23 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEE----EeCC--CCC-CHHHHHHHHHHhhhC
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFI----LDAN--EGY-TSEEAVEVLGKLNDM 273 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~----vDAN--~~~-s~~~A~~~l~~L~~~ 273 (438)
++.+...+.+.++.+.+.|.+++-+ +. .+.++.+|+. .++.+. -|.. ..+ ++ -.+.++.+.+.
T Consensus 22 ~~~~~~~i~~~a~~~~~~G~~~~~~--~~-----~~~~~~i~~~-~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~a 91 (219)
T cd04729 22 PLHSPEIMAAMALAAVQGGAVGIRA--NG-----VEDIRAIRAR-VDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAA 91 (219)
T ss_pred CcCcHHHHHHHHHHHHHCCCeEEEc--CC-----HHHHHHHHHh-CCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHc
Confidence 4567778888899999999988663 22 2344445543 222222 1221 111 11 12345555555
Q ss_pred CCCCceEecCCC--CC--ChhhHH-HHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC--------cchH
Q 013681 274 GVIPVLFEQPVH--RD--DWSGLH-DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA--------KFGV 340 (438)
Q Consensus 274 ~l~~~~iEqPl~--~~--d~~~~a-~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~--------~~Gi 340 (438)
+.....+--+.. ++ ..+.+- +++ +...+|+.. .+.+..+..++.+.+ +|++.+.+. ..+
T Consensus 92 Gad~I~~~~~~~~~p~~~~~~~~i~~~~----~~g~~~iiv--~v~t~~ea~~a~~~G-~d~i~~~~~g~t~~~~~~~~- 163 (219)
T cd04729 92 GADIIALDATDRPRPDGETLAELIKRIH----EEYNCLLMA--DISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTED- 163 (219)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHHH----HHhCCeEEE--ECCCHHHHHHHHHcC-CCEEEccCccccccccCCCC-
Confidence 543112222221 11 233332 333 223588776 456788888877765 888865421 111
Q ss_pred HHHHHHHHHHHHcCCeEEEccCC
Q 013681 341 LGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
....-+.++.+..+++++..+-+
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GGI 186 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGRI 186 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCC
Confidence 11122333344558999887654
No 358
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.28 E-value=1.8e+02 Score=28.25 Aligned_cols=103 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEe-----------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFE-----------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iE-----------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
+.+++++++++|++.+......- +-+..+.+..++++++ +.++|++. +..+..++..+.+.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~----~~Gl~~~t--e~~d~~~~~~l~~~-- 110 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD----KYNLPVVT--EVMDTRDVEEVADY-- 110 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH----HcCCCEEE--eeCChhhHHHHHHh--
Q ss_pred ccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHH
Q 013681 328 ASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (438)
Q Consensus 328 ~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (438)
++++++- . -..-..+...+.+.|+++.+..-...++.-...+
T Consensus 111 vd~~kIg----a~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A 153 (266)
T PRK13398 111 ADMLQIG----SRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYA 153 (266)
T ss_pred CCEEEEC----cccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHH
No 359
>PRK06256 biotin synthase; Validated
Probab=38.24 E-value=4.1e+02 Score=26.35 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHhhcCCcEEEEec------------CCCchHHHHHHHHHHhhCC--CcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 212 ASKYCKLGFSTLKLNV------------GRNITADFDVLQAIHAVHP--HCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKv------------G~d~~~di~~l~aiR~~~~--~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
++++.+.|.+.+-+.+ +.+.++-++.++.+++.|= ...+.+-. +-+.++..+.+..+.++++
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl--gEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM--GESLEDRVEHAFFLKELDA 230 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC--CCCHHHHHHHHHHHHhCCC
Confidence 4456677877664422 1234555566677666541 22334433 3566666666666665553
No 360
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=38.16 E-value=3.4e+02 Score=25.35 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec--CC-CchHHHHHHHHHHhh--CCCcEEEEeCCCC-------CCHHHHHHH-HHHh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNV--GR-NITADFDVLQAIHAV--HPHCSFILDANEG-------YTSEEAVEV-LGKL 270 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKv--G~-d~~~di~~l~aiR~~--~~~~~L~vDAN~~-------~s~~~A~~~-l~~L 270 (438)
+.+....++++.++.|-..+.+-+ +. +.++-.+.++++++. ..++.+.+|..-. .+.++ ++. ++..
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~-i~~~~~~a 152 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDL-IAYAARIG 152 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHH-HHHHHHHH
Confidence 445555667788899999885544 43 223334456666652 3467777765321 23333 333 4555
Q ss_pred hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE--cCCCCCHHH----HHHHHHcCCccEEE
Q 013681 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DESCRSLND----VQKVMQENLASVVN 332 (438)
Q Consensus 271 ~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~--dEsl~~~~d----~~~ll~~~a~d~i~ 332 (438)
.+.+.. ||--+.. .+.+.++++++ ..++||.. +....+..+ +.++++.+ ++.+.
T Consensus 153 ~~~GaD--~Ik~~~~-~~~~~~~~i~~----~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G-a~gv~ 212 (235)
T cd00958 153 AELGAD--IVKTKYT-GDAESFKEVVE----GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG-AAGVA 212 (235)
T ss_pred HHHCCC--EEEecCC-CCHHHHHHHHh----cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC-CcEEE
Confidence 556653 5555533 36788888875 46677644 334456655 56667765 44443
No 361
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.84 E-value=2e+02 Score=27.57 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEccCC
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+..+-+.+++.+++||..| -.++.-++..++.+ .++|| +.+ |...-.+++.++.++|.++++-.+-
T Consensus 64 l~~~v~~l~~~~~~piSID--T~~~~v~~aaL~~g-~~iIN-dis--~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 64 VIPVLRALAGEPDVPISVD--TFNAEVAEAALKAG-ADIIN-DVS--GGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHHHHhcCCCeEEEe--CCcHHHHHHHHHhC-CCEEE-eCC--CCCCChHHHHHHHHcCCCEEEECcC
Confidence 3333333444568999998 34566678889876 55544 332 2211156788999999998875543
No 362
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=37.67 E-value=1.1e+02 Score=30.23 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe-----cCC---CchHHHHHH----HHHHhhCCCcEEEEeCCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLN-----VGR---NITADFDVL----QAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK-----vG~---d~~~di~~l----~aiR~~~~~~~L~vDAN~~ 257 (438)
.+++...+++++++++|-..|-+- .|. +.+++++|+ +++++.. ++.|.||....
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~~~ 100 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSKP 100 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECCCH
Confidence 478889999999999998887776 332 456676665 3334322 68899997654
No 363
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=37.62 E-value=3.8e+02 Score=25.77 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (438)
+.++..+.++.+.+.|++.|-+-....-++|.+.++.+++..++.++..=+... .+.....++.....++....+=-|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~--~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAV--KKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCC--HhhHHHHHHhCCCCCCCEEEEEec
Confidence 677888889999999999988854322246788999998876776665433211 222222222221111221123334
Q ss_pred CCC------------CChhhHHHHHHhhccccCCeEEE---cCCCCCHHHH----HHHHHcCCccEEEecCCc-ch-HHH
Q 013681 284 VHR------------DDWSGLHDVSNFARDTYGISVVA---DESCRSLNDV----QKVMQENLASVVNIKLAK-FG-VLG 342 (438)
Q Consensus 284 l~~------------~d~~~~a~L~~~~r~~~~iPIa~---dEsl~~~~d~----~~ll~~~a~d~i~lk~~~-~G-i~~ 342 (438)
+.. +.++...+..+.+++ .+..|.. |.+-.+++.+ +++.+.+ ++.|.++=+. .. ...
T Consensus 96 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~ 173 (268)
T cd07940 96 TSDIHLKYKLKKTREEVLERAVEAVEYAKS-HGLDVEFSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEE 173 (268)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHH
Confidence 421 123333333333332 3455533 3344556554 3444444 6666665444 23 455
Q ss_pred HHHHHHHHHHc-C---CeEEEccCCchhHHHH
Q 013681 343 TLQIIKATRKS-G---LHLMIDGMIETRLATG 370 (438)
Q Consensus 343 ~~~~~~~A~~~-g---i~~~~~s~~es~ig~~ 370 (438)
..+++...++. + +++.+|+-...+++++
T Consensus 174 v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 174 FGELIKKLKENVPNIKVPISVHCHNDLGLAVA 205 (268)
T ss_pred HHHHHHHHHHhCCCCceeEEEEecCCcchHHH
Confidence 66666666553 4 7888887654444433
No 364
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=37.59 E-value=1.5e+02 Score=24.33 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=50.2
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHc--CCeEEEccCC
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS--GLHLMIDGMI 363 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~--gi~~~~~s~~ 363 (438)
++..++..+++ .+..+..=.......++.+.+....+|+|-+-..... +..+.++++.+++. ++.+++++..
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 44455555443 3555532223345578877777789999999875555 88899999998887 8899999864
No 365
>PRK00915 2-isopropylmalate synthase; Validated
Probab=37.50 E-value=5.4e+02 Score=27.54 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred eCCCC----CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHH----H
Q 013681 253 DANEG----YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM----Q 324 (438)
Q Consensus 253 DAN~~----~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll----~ 324 (438)
|.+|+ |+.++-+++++.|.+.|++ .||==.+.-.......+++.+....+..|+.==... ..|++..+ +
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~-~~did~a~~a~~~ 90 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVD--VIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAV-KKDIDAAAEALKP 90 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCC-HHHHHHHHHHhhc
Q ss_pred cCCccEEEecCC------------cch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 325 ENLASVVNIKLA------------KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 325 ~~a~d~i~lk~~------------~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
.+...+-..-++ +-. +..+.+.+++|+++|..+..+..-.+-.-......++..+
T Consensus 91 ~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 91 AEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred CCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
No 366
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=37.32 E-value=2.2e+02 Score=28.86 Aligned_cols=139 Identities=10% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCchH---HHHHHHHHHh-h-CCCcEEEEeCCCC------CCHHHHHHHHHHhhhCC
Q 013681 206 AEASELASKYCKLGFSTLKLNVGRNITA---DFDVLQAIHA-V-HPHCSFILDANEG------YTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~d~~~---di~~l~aiR~-~-~~~~~L~vDAN~~------~s~~~A~~~l~~L~~~~ 274 (438)
++-.+-++.+.+.||+.+=+-++..-++ ..++++.+-+ + --+++++||+|.+ ||.+. +.+++.+-..+
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~-l~~f~e~G~~g 94 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDN-LSRFQELGVDG 94 (360)
T ss_pred hhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHH-HHHHHHhhhhh
Confidence 4446667888899999998888753223 3445555443 2 3689999999975 56553 44444444334
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC------c-ch--HHHHHH
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA------K-FG--VLGTLQ 345 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~------~-~G--i~~~~~ 345 (438)
++ +..-++ -++.++++ +.++-|.+.-|.++. .+..+++. .++.=++..+ . .| ..-.++
T Consensus 95 lR---lD~gfS---~eei~~ms-----~~~lkieLN~S~it~-~l~~l~~~-~an~~nl~~cHNyYPr~yTGLS~e~f~~ 161 (360)
T COG3589 95 LR---LDYGFS---GEEIAEMS-----KNPLKIELNASTITE-LLDSLLAY-KANLENLEGCHNYYPRPYTGLSREHFKR 161 (360)
T ss_pred ee---ecccCC---HHHHHHHh-----cCCeEEEEchhhhHH-HHHHHHHh-ccchhhhhhcccccCCcccCccHHHHHH
Confidence 32 222333 34455555 345888888887776 55566554 3444444332 1 36 334566
Q ss_pred HHHHHHHcCCeEE
Q 013681 346 IIKATRKSGLHLM 358 (438)
Q Consensus 346 ~~~~A~~~gi~~~ 358 (438)
--+.-+.+|++.+
T Consensus 162 kn~~fk~~~i~t~ 174 (360)
T COG3589 162 KNEIFKEYNIKTA 174 (360)
T ss_pred HHHHHHhcCCceE
Confidence 6777788888875
No 367
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=37.29 E-value=2.8e+02 Score=26.89 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=48.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE-EEcCCCCCHHHHHHHHHcC
Q 013681 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV-VADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI-a~dEsl~~~~d~~~ll~~~ 326 (438)
-.+.||.. ..+++.+.+..+.+++.+++ |++-|+.-... .. + .-.+.+ +.++. .....++.+++..
T Consensus 83 g~~vid~s-t~~p~~~~~~~~~~~~~g~~--~vdaPv~Gg~~-~a----~----~g~l~~~~gg~~-~~~~~~~~~l~~~ 149 (288)
T TIGR01692 83 GSLLIDCS-TIDPDSARKLAELAAAHGAV--FMDAPVSGGVG-GA----R----AGTLTFMVGGVA-EEFAAAEPVLGPM 149 (288)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHHcCCc--EEECCCCCCHH-HH----h----hCcEEEEECCCH-HHHHHHHHHHHHh
Confidence 36889998 77889999999999988875 99999975431 11 1 122343 44432 2345556777755
Q ss_pred CccEEEecC
Q 013681 327 LASVVNIKL 335 (438)
Q Consensus 327 a~d~i~lk~ 335 (438)
.-.++.+.+
T Consensus 150 g~~~~~~g~ 158 (288)
T TIGR01692 150 GRNIVHCGD 158 (288)
T ss_pred cCCeEeeCC
Confidence 555666554
No 368
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=37.24 E-value=4.1e+02 Score=26.04 Aligned_cols=149 Identities=8% Similarity=0.124 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++ ...++.+.+=.. +-+.+++++..+..++.+..
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHHHHHHHHHHHHcCCC
Confidence 67888889999999998877654332 23444455666665 344566664333 36789999999999988865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhcccc-CCeEEEcC------CCCCHHHHHHHHHcCCccEEEecCCcch-HHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTY-GISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~-~iPIa~dE------sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~ 343 (438)
-..+--|.. +.+ .+-++.+++ .+ ++||.+=. ...+.+.+.++.+. .+.++-+|-+- | +...
T Consensus 98 ~v~v~pP~y~~~~~~~l~~~f~~ia~----a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~-~pnv~giK~ss-~d~~~~ 171 (294)
T TIGR02313 98 AAMVIVPYYNKPNQEALYDHFAEVAD----AVPDFPIIIYNIPGRAAQEIAPKTMARLRKD-CPNIVGAKESN-KDFEHL 171 (294)
T ss_pred EEEEcCccCCCCCHHHHHHHHHHHHH----hccCCCEEEEeCchhcCcCCCHHHHHHHHhh-CCCEEEEEeCC-CCHHHH
Confidence 335666652 222 233445554 57 78887532 23345666777643 47888899864 5 6555
Q ss_pred HHHHHHHHHcCCeEEEc
Q 013681 344 LQIIKATRKSGLHLMID 360 (438)
Q Consensus 344 ~~~~~~A~~~gi~~~~~ 360 (438)
.++++... .++.++.+
T Consensus 172 ~~~~~~~~-~~~~v~~G 187 (294)
T TIGR02313 172 NHLFLEAG-RDFLLFCG 187 (294)
T ss_pred HHHHHhcC-CCeEEEEc
Confidence 55443321 24444444
No 369
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=36.96 E-value=8e+02 Score=29.30 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhh--cCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeCCCC----CC--HHHHH-HHH
Q 013681 205 PAEASELASKYCK--LGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANEG----YT--SEEAV-EVL 267 (438)
Q Consensus 205 ~~~~~~~~~~~~~--~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDAN~~----~s--~~~A~-~~l 267 (438)
.++|...++.+-+ .||..+-+--|.-| ++=.+||+.+|+..|++.+..=..|. |+ +++.+ .|.
T Consensus 552 t~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~ 631 (1143)
T TIGR01235 552 THDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFV 631 (1143)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHH
Confidence 4667777777755 49999999888633 33478999999988887775444332 43 55554 567
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC----eEEEc-------CCCCCHHHH----HHHHHcCCccEEE
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI----SVVAD-------ESCRSLNDV----QKVMQENLASVVN 332 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i----PIa~d-------Esl~~~~d~----~~ll~~~a~d~i~ 332 (438)
+...+.++.+..|=+++. |.+.|..-.+.+++ .+. -|+-- ...++.+.+ +++.+. .+|.|.
T Consensus 632 ~~~~~~GidifrifD~lN--~~~n~~~~~~~~~~-~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~-Gad~I~ 707 (1143)
T TIGR01235 632 KQAAQGGIDIFRVFDSLN--WVENMRVGMDAVAE-AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA-GAHILG 707 (1143)
T ss_pred HHHHHcCCCEEEECccCc--CHHHHHHHHHHHHH-cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc-CCCEEE
Confidence 777888887777767765 56666655444433 222 22211 223455432 455555 488888
Q ss_pred ecCCcch-H--HHHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 333 IKLAKFG-V--LGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 333 lk~~~~G-i--~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
+|=+- | + ..+.+++...+ +.++++.+|+-..++++.+.
T Consensus 708 ikDt~-Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an 749 (1143)
T TIGR01235 708 IKDMA-GLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVAS 749 (1143)
T ss_pred ECCCc-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHH
Confidence 87665 5 3 44555555443 45899999987666655543
No 370
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=36.79 E-value=35 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC
Q 013681 211 LASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH 245 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~ 245 (438)
.++++..+||..++.-.|....++.+..+.+|.+|
T Consensus 3 ~a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF 37 (41)
T PF11590_consen 3 TAERLRSAGFATIGSGAGLPSSEEEETRQKLRRAF 37 (41)
T ss_dssp HHHHHHHTT-EEECTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccCccccchhhHHHHHHHHHHH
Confidence 35677889999998888876666777777776543
No 371
>PRK07695 transcriptional regulator TenI; Provisional
Probab=36.67 E-value=3.3e+02 Score=24.81 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC-------------chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN-------------ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d-------------~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (438)
+.++..+.++.+.+.|....++=+..+ +..+-..++.+|+.+++..+.+.++ +.+++.+.
T Consensus 39 ~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~~~~~~~~~~r~~~~~~~ig~s~~---s~e~a~~a---- 111 (201)
T PRK07695 39 SAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLGYRSFSVRSVREKFPYLHVGYSVH---SLEEAIQA---- 111 (201)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeCcccCCHHHHHHhCCCCEEEEeCC---CHHHHHHH----
Confidence 555666666666665554333333221 1111123466677667777888654 56665443
Q ss_pred hhCCCCCceE------ecC----CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 271 NDMGVIPVLF------EQP----VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 271 ~~~~l~~~~i------EqP----l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+.+.. |+ +.. .+...++.++++++ ..++||..-=-+ +..++.++++.+ ++++.+
T Consensus 112 ~~~Gad--yi~~g~v~~t~~k~~~~~~g~~~l~~~~~----~~~ipvia~GGI-~~~~~~~~~~~G-a~gvav 176 (201)
T PRK07695 112 EKNGAD--YVVYGHVFPTDCKKGVPARGLEELSDIAR----ALSIPVIAIGGI-TPENTRDVLAAG-VSGIAV 176 (201)
T ss_pred HHcCCC--EEEECCCCCCCCCCCCCCCCHHHHHHHHH----hCCCCEEEEcCC-CHHHHHHHHHcC-CCEEEE
Confidence 333432 22 111 12223455555553 456776543344 777888888765 566544
No 372
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=36.67 E-value=4.5e+02 Score=26.85 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEE--------EEeC-----CCCC-CHHHHHHHHHHh------h
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF--------ILDA-----NEGY-TSEEAVEVLGKL------N 271 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L--------~vDA-----N~~~-s~~~A~~~l~~L------~ 271 (438)
||+.+=+.-.. ++++++++.+.+-+. += +.+| .++. +.-| +|++|.+|.++. +
T Consensus 135 gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD 214 (357)
T TIGR01520 135 LFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNF 214 (357)
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcc
Confidence 39999998765 889999988888662 20 1111 1111 1236 599999999865 1
Q ss_pred h----CC-CCCceE-ecCCCCCChhhHHHHHHhhccccCCe-------EEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 272 D----MG-VIPVLF-EQPVHRDDWSGLHDVSNFARDTYGIS-------VVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 272 ~----~~-l~~~~i-EqPl~~~d~~~~a~L~~~~r~~~~iP-------Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
- +| .|=.|- +.| .-|++-++++.+.+++.+++| +.-|=|=...++++++++.+ +.=||+.-..
T Consensus 215 ~LAvAiGT~HG~Yk~~~p--~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~G-I~KINi~Tdl 290 (357)
T TIGR01520 215 SIAAAFGNVHGVYKPGNV--KLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYG-VVKMNIDTDT 290 (357)
T ss_pred eeeeeeccccCCcCCCCC--ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcHH
Confidence 1 11 121132 333 347888888854333456787 45566778888999999876 5456776533
No 373
>PRK10060 RNase II stability modulator; Provisional
Probab=36.61 E-value=3.6e+02 Score=29.76 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=72.9
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCCCCCc--eEe--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 252 LDANEGYTSEEAVEVLGKLNDMGVIPV--LFE--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~l~~~--~iE--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
+.+.+-.+.+-.-.+.+.++++++.+. .|| |....++.+....+.+.++ +.|+.|++|.--.+...+..+. ...
T Consensus 499 ls~~~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~-~~G~~ialDdfGtg~ssl~~L~-~l~ 576 (663)
T PRK10060 499 VSARQLADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFS-QLGAQVHLDDFGTGYSSLSQLA-RFP 576 (663)
T ss_pred cCHHHhCCCcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHH-HCCCEEEEECCCCchhhHHHHH-hCC
Confidence 333333344333345555666654322 233 3222344444444333333 4799999998777777766554 457
Q ss_pred ccEEEecCCcch-HH-------HHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 328 ASVVNIKLAKFG-VL-------GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 328 ~d~i~lk~~~~G-i~-------~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+|++-+|-+.+- +. -...++.+|++.|+.++..+ +|+. ....+...+|.
T Consensus 577 ~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG-VEt~----~q~~~l~~~G~ 633 (663)
T PRK10060 577 IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG-VETA----KEDAFLTKNGV 633 (663)
T ss_pred CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec-CCCH----HHHHHHHHcCC
Confidence 999999976652 32 24668999999999998876 4653 34444445544
No 374
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=36.17 E-value=4.9e+02 Score=26.57 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=85.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
++.+...++..+ +..+.++.+.+.|-..|-+.+.. .-+.-++.++.||+.+|++.+. +..--|.+.|..+++.=.
T Consensus 96 ~l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~vi--aGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 96 RLLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVI--AGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp CBCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEE--EEEE-SHHHHHHHHHTT-
T ss_pred cceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEE--ecccCCHHHHHHHHHcCC
Confidence 444555555432 23556777888999999998764 4567788899999999988877 333456777776555422
Q ss_pred h---CCCCC--ceEecC---CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch
Q 013681 272 D---MGVIP--VLFEQP---VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339 (438)
Q Consensus 272 ~---~~l~~--~~iEqP---l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G 339 (438)
+ -++-+ .-.=+. +-..|.....+.++.+ ++.++||.+|=-+.+..|+-.+|..+ .|.+++--..-|
T Consensus 172 d~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a-~~~~v~iIADGGi~~sGDi~KAla~G-Ad~VMlG~llAg 245 (352)
T PF00478_consen 172 DAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAA-RDYGVPIIADGGIRTSGDIVKALAAG-ADAVMLGSLLAG 245 (352)
T ss_dssp SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHH-HCTTSEEEEESS-SSHHHHHHHHHTT--SEEEESTTTTT
T ss_pred CEEEEeccCCcccccccccccCCcHHHHHHHHHHHh-hhccCceeecCCcCcccceeeeeeec-ccceeechhhcc
Confidence 1 11110 000000 0012444555555433 35799999999999999999999875 788887654444
No 375
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=35.99 E-value=5.6e+02 Score=27.23 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=62.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
+++|++--+.. ++..+.++.|.+.++.. -+=+.-. +.-+...++-+.+|+.. ++||..| .+.+.+..+++++.+
T Consensus 213 rl~Vgaav~~~-~~~~~ra~~Lv~aGVd~-i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g-~~~t~~~~~~l~~~G- 287 (475)
T TIGR01303 213 RLRIGAAVGIN-GDVGGKAKALLDAGVDV-LVIDTAH-GHQVKMISAIKAVRALDLGVPIVAG-NVVSAEGVRDLLEAG- 287 (475)
T ss_pred CceehheeeeC-ccHHHHHHHHHHhCCCE-EEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEe-ccCCHHHHHHHHHhC-
Confidence 44444443332 23345666666555432 1112222 22233333333343333 6898886 456788899999876
Q ss_pred ccEEEe-----------cCCcch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 328 ASVVNI-----------KLAKFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 328 ~d~i~l-----------k~~~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+|+|.+ ..+-+| ++...+.++.|+++|++++-.+-+
T Consensus 288 ~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi 337 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGV 337 (475)
T ss_pred CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 677751 112234 556677888889999999877655
No 376
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.45 E-value=4.4e+02 Score=25.85 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc---hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI---TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~---~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
+++.+.+.+++..+.|+..|-+.++... ..+.+.++.+++..+ ..+.+= +..++++|. .+.+.++....+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvivK--~v~s~~~a~----~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLILK--GILTPEDAL----RAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEEEe--ecCCHHHHH----HHHHCCCCEEEE
Confidence 6777777777777889999999998532 124467888887533 222221 125565543 444455431122
Q ss_pred -----ecC-CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 281 -----EQP-VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 281 -----EqP-l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-+. .....++.+.++++.+ ...+||..+--+.+..|+.+.+..+ +|.+++=
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~ig 256 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAV--GGRIEVLLDGGIRRGTDVLKALALG-ADAVLIG 256 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEc
Confidence 111 1122355566665421 1159999999999999999999865 7777663
No 377
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.23 E-value=2.4e+02 Score=26.55 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=35.8
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+++..+++++ ..++||..+=.+.+.++++++++.+ ++.+++--..
T Consensus 59 ~~~~i~~i~~----~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~ 103 (243)
T cd04731 59 MLDVVERVAE----EVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAA 103 (243)
T ss_pred cHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchh
Confidence 5677777775 5789999999999999999999875 7777765433
No 378
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=35.05 E-value=1.6e+02 Score=29.19 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=29.3
Q ss_pred ChhhHHHHHHhhccccCCeEE--EcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 288 DWSGLHDVSNFARDTYGISVV--ADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa--~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
+++.++++++ ..++||. .-=-+.++.++..+++.+ ++.+.+
T Consensus 191 ~~elL~ei~~----~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaV 233 (293)
T PRK04180 191 PYELVKEVAE----LGRLPVVNFAAGGIATPADAALMMQLG-ADGVFV 233 (293)
T ss_pred CHHHHHHHHH----hCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEE
Confidence 5778888875 4678985 333566999999999876 555544
No 379
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=35.03 E-value=3.1e+02 Score=26.47 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEec------C----CCCC-ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQ------P----VHRD-DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq------P----l~~~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
.+++++++.++++.+.|.+ +|.= | +..+ +++.+..+-+.+++.+++||+.| ..+++-++..++.+
T Consensus 20 ~~~~~~~~~a~~~~~~GA~--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~vi~~al~~G 95 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGAD--IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAEVARAALEAG 95 (257)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHHHHHHHHHcC
Confidence 4667777777776665544 4432 1 1110 11223333344444568999998 34667788899875
Q ss_pred CccEEEecCCcchHHHHHHHHHHHHHcCCeEEEc
Q 013681 327 LASVVNIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 327 a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (438)
.++|+= .+ |.. .-+++.++.++|.++++-
T Consensus 96 -~~iINs-is--~~~-~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 96 -ADIIND-VS--GGQ-DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred -CCEEEE-CC--CCC-CchhHHHHHHcCCcEEEE
Confidence 666552 21 222 346778899999998763
No 380
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.85 E-value=5.8e+02 Score=27.12 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=40.1
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEec--C---------Ccch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIK--L---------AKFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk--~---------~~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+++|.+|. +.+.+..+.+++.+ +|+|-+- + +-+| ++...++++.|+++|++++-.+-+
T Consensus 268 ~~~v~agn-v~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi 339 (479)
T PRK07807 268 GVPIVAGN-VVTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV 339 (479)
T ss_pred CCeEEeec-cCCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 47777764 46788889999876 7876511 2 2223 566677777788899999876544
No 381
>PLN02428 lipoic acid synthase
Probab=34.80 E-value=5.1e+02 Score=26.39 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--C-----chHHHHHHHHHHhhCCCcEEEEeCCCCCC-HHHHHHHHHHh--hhC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--N-----ITADFDVLQAIHAVHPHCSFILDANEGYT-SEEAVEVLGKL--NDM 273 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--d-----~~~di~~l~aiR~~~~~~~L~vDAN~~~s-~~~A~~~l~~L--~~~ 273 (438)
++++..+.++...+.|.+.+-+--|. | .+.=.+.+++||+..|++.+.+= ...+- -+++++.+... +-+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L-~pdf~~d~elL~~L~eAG~d~i 209 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEAL-VPDFRGDLGAVETVATSGLDVF 209 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEe-CccccCCHHHHHHHHHcCCCEE
Confidence 56666677777778898776554331 1 23445677888887787665541 11111 14455555442 223
Q ss_pred CCCCceEec------CCC--CCChhhHHHHHHhhcc-------ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe----c
Q 013681 274 GVIPVLFEQ------PVH--RDDWSGLHDVSNFARD-------TYGISVVADESCRSLNDVQKVMQENLASVVNI----K 334 (438)
Q Consensus 274 ~l~~~~iEq------Pl~--~~d~~~~a~L~~~~r~-------~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l----k 334 (438)
.. =+|- -+. ..+++..-++-+.+++ ++++=+.+||+.....+..+.+....+|++.+ .
T Consensus 210 ~h---nlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~ 286 (349)
T PLN02428 210 AH---NIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLR 286 (349)
T ss_pred cc---CccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccC
Confidence 22 2443 121 2344433333322222 23444566887777777777777777766654 2
Q ss_pred CCcc--h------HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 335 LAKF--G------VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 335 ~~~~--G------i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
|++. - ..+..++.++|.+.|...+.++.+
T Consensus 287 Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~ 323 (349)
T PLN02428 287 PTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPL 323 (349)
T ss_pred CCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCc
Confidence 2221 1 345788899999999988776654
No 382
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=34.56 E-value=5.7e+02 Score=26.90 Aligned_cols=135 Identities=13% Similarity=0.176 Sum_probs=78.1
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhC--CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~--~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~ 287 (438)
.+++.++.|-+.+.++.-. +-++-.+.++++++.. .++.+.|+-+ .+.+.++.-+|+| +..+
T Consensus 222 ~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~--------~dlAl~~gAdGVH-------LGQe 286 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDY--------WQLAIKHQAYGVH-------LGQE 286 (437)
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECH--------HHHHHHcCCCEEE-------cChH
Confidence 5777889999999998754 2233334455555532 3677777632 3344455666777 2222
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC----------Cc-chHHHHHHHHHHHHH----
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL----------AK-FGVLGTLQIIKATRK---- 352 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~----------~~-~Gi~~~~~~~~~A~~---- 352 (438)
|+.. ..+++ ..+--..+|=|+++.+++.++.+. .+||+.+-| .. .|+....++.+++..
T Consensus 287 DL~~-~~aR~----ilg~~~iIGvStHs~eEl~~A~~~-gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~ 360 (437)
T PRK12290 287 DLEE-ANLAQ----LTDAGIRLGLSTHGYYELLRIVQI-QPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQ 360 (437)
T ss_pred Hcch-hhhhh----hcCCCCEEEEecCCHHHHHHHhhc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhcccc
Confidence 3211 22221 122224457789999998888765 589998632 11 366666666666543
Q ss_pred --cCCeEE-EccCCchh
Q 013681 353 --SGLHLM-IDGMIETR 366 (438)
Q Consensus 353 --~gi~~~-~~s~~es~ 366 (438)
.+++++ +|+....+
T Consensus 361 ~~~~iPVVAIGGI~~~N 377 (437)
T PRK12290 361 GQTGFPTVAIGGIDQSN 377 (437)
T ss_pred ccCCCCEEEECCcCHHH
Confidence 468865 66544433
No 383
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=33.72 E-value=4e+02 Score=27.11 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=75.4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCC----------CCceEecCCCCCChhhH----------------HHHHHhh--
Q 013681 248 CSFILDANEGYTSEEAVEVLGKLNDMGV----------IPVLFEQPVHRDDWSGL----------------HDVSNFA-- 299 (438)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l----------~~~~iEqPl~~~d~~~~----------------a~L~~~~-- 299 (438)
.-+.+=.-..-++++|++++++|++.+- + .++|-|=....|.++ ..+++.+
T Consensus 54 llvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR-~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~ 132 (349)
T PRK09261 54 LLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMR-VYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLD 132 (349)
T ss_pred eEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEE-eccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHH
Confidence 4444555556678889999888876431 1 267877665444444 3333221
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch--HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
..++++|++.. +.++...+-+.+ -+++.+ +| -++.....++|...++++.+-....++|..+..+-.++
T Consensus 133 ~~e~GlpvatE--~ld~~~~~y~~d--lvs~~~-----IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa 203 (349)
T PRK09261 133 INELGLPAATE--FLDPITPQYIAD--LISWGA-----IGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAA 203 (349)
T ss_pred HHHhCCCeEEE--ecccccHHHHHh--hcceee-----eccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHH
Confidence 23589999874 233333332222 244444 46 56778888999999999999887777777666555555
Q ss_pred hcC
Q 013681 378 GLG 380 (438)
Q Consensus 378 al~ 380 (438)
+.+
T Consensus 204 ~~~ 206 (349)
T PRK09261 204 SAP 206 (349)
T ss_pred hCC
Confidence 544
No 384
>PRK05927 hypothetical protein; Provisional
Probab=33.65 E-value=1e+02 Score=31.33 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc----hHHHHHHHHHHhhCCCcEE---------EEeCCCCCCHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSF---------ILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~----~~di~~l~aiR~~~~~~~L---------~vDAN~~~s~~~A~~~l~ 268 (438)
.+++++.+.+++..+.|++.+=+--|.++ +.=.+.++.|++.+|++.+ .+-++-+.+.++.++.|+
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk 154 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLW 154 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 47899999999999999999988655443 3444567888877887654 123555666666555444
No 385
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=33.58 E-value=90 Score=34.87 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=62.2
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 245 ~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
.|..++|+-.+++|+.++|.+.+.-|+++||. -..=-||- -|..-|.++. |
T Consensus 3 ~P~ATYRLQ~~~gFtF~~A~~~l~yl~~LGIS-hLY~SPIf---------------------tA~pGStHGY-D------ 53 (889)
T COG3280 3 IPTATYRLQFRGGFTFADARALLDYLADLGIS-HLYLSPIF---------------------TARPGSTHGY-D------ 53 (889)
T ss_pred CCcceeEEeecCCCCHHHHHHhhHHHHhcCch-heeccchh---------------------hcCCCCCCCc-c------
Confidence 36778999999999999999999999999983 34444442 1222244442 2
Q ss_pred cCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEc
Q 013681 325 ENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 325 ~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (438)
-+|.-.|.|.+-|..+..++++.+++.|+++.+.
T Consensus 54 --VvD~t~InPeLGG~egl~rLvaalk~~GlGlI~D 87 (889)
T COG3280 54 --VVDPTEINPELGGEEGLERLVAALKSRGLGLIVD 87 (889)
T ss_pred --CCCccccChhhcChHHHHHHHHHHHhcCCceEEE
Confidence 2455566666645889999999999999998764
No 386
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=33.41 E-value=2.4e+02 Score=27.74 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=30.0
Q ss_pred ChhhHHHHHHhhccccCCeEE-EcC-CCCCHHHHHHHHHcCCccEEEe
Q 013681 288 DWSGLHDVSNFARDTYGISVV-ADE-SCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa-~dE-sl~~~~d~~~ll~~~a~d~i~l 333 (438)
+++.++++++ ..++||. .-| -+.+++++.++++.+ ++.+.+
T Consensus 182 d~elLk~l~~----~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaV 224 (283)
T cd04727 182 PYELVKETAK----LGRLPVVNFAAGGVATPADAALMMQLG-ADGVFV 224 (283)
T ss_pred CHHHHHHHHH----hcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 5788888876 4679996 234 556999999999976 555554
No 387
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.08 E-value=1.4e+02 Score=24.29 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=63.0
Q ss_pred HHHHHHHHhhCCCcEEE--EeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCC
Q 013681 235 FDVLQAIHAVHPHCSFI--LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312 (438)
Q Consensus 235 i~~l~aiR~~~~~~~L~--vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEs 312 (438)
-..++++++..++.++. +|-+ ++.+.++ .+.+++. .+ .+++++ .+. ....+-+.....
T Consensus 13 ~~~~~~~~~~~~~~~v~~v~d~~----~~~~~~~---~~~~~~~--~~------~~~~~l---l~~--~~~D~V~I~tp~ 72 (120)
T PF01408_consen 13 RRHLRALLRSSPDFEVVAVCDPD----PERAEAF---AEKYGIP--VY------TDLEEL---LAD--EDVDAVIIATPP 72 (120)
T ss_dssp HHHHHHHHHTTTTEEEEEEECSS----HHHHHHH---HHHTTSE--EE------SSHHHH---HHH--TTESEEEEESSG
T ss_pred HHHHHHHHhcCCCcEEEEEEeCC----HHHHHHH---HHHhccc--ch------hHHHHH---HHh--hcCCEEEEecCC
Confidence 34566677666665553 4554 3443333 3344542 11 123333 220 123443333333
Q ss_pred CCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEc
Q 013681 313 CRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 313 l~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~ 360 (438)
-.-.+-+..+++.+ .+++.=||.-..+.++.++.++|+++|..++++
T Consensus 73 ~~h~~~~~~~l~~g-~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 73 SSHAEIAKKALEAG-KHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp GGHHHHHHHHHHTT-SEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred cchHHHHHHHHHcC-CEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33345568888876 488888997777999999999999999999875
No 388
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.00 E-value=4.6e+02 Score=25.32 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-CCC--chHHHHHHHHHHhhC--CCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-GRN--ITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-G~d--~~~di~~l~aiR~~~--~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
.+++++.+.++++.+.|++.+-+-. |.+ .+.-.+.++.+++.. .++.+.+-. +..+. + .++.|++.|+
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~-g~~~~-e---~l~~Lk~aG~ 134 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL-GLLDP-E---QAKRLKDAGL 134 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC-CCCCH-H---HHHHHHHcCC
Confidence 4678888888888888998765543 332 222255666665532 245444322 33443 3 4445555554
No 389
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=32.84 E-value=1.5e+02 Score=29.97 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc----hHHHHHHHHHHhhCCCcEEEE---------eCCCCCCHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFIL---------DANEGYTSEEAVEVLG 268 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~----~~di~~l~aiR~~~~~~~L~v---------DAN~~~s~~~A~~~l~ 268 (438)
.+++++.+.+++..+.|.+.+=+--|.++ +.=.+.++.|++.+|++.+.. ....+.+.++.++.|+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 37899999999888899999988866433 334567888888888776642 1234555565454444
No 390
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=32.69 E-value=3.1e+02 Score=28.43 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCC---CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH-HH
Q 013681 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV-QK 321 (438)
Q Consensus 246 ~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~---~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~-~~ 321 (438)
|-+.+.+|. .+.++|++++++|.+++. .|+|==.+ ..-.+..++|++ ...+.+|-+|=-+.+.... .+
T Consensus 173 p~L~vALD~---~~~~~A~~i~~~l~~~~~--~~iKvG~~L~~~~G~~iVk~Lr~---~~~~~~I~~DLK~~Di~~~vv~ 244 (391)
T PRK13307 173 PYLQVALDL---PDLEEVERVLSQLPKSDH--IIIEAGTPLIKKFGLEVISKIRE---VRPDAFIVADLKTLDTGNLEAR 244 (391)
T ss_pred ceEEEecCC---CCHHHHHHHHHhcccccc--eEEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEecccChhhHHHH
Confidence 456677765 467999999999998754 28886554 222344455543 1256899999988888765 43
Q ss_pred HHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEE
Q 013681 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 322 ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
.+..-.+|++.+-..- |.....+.++.++++|+.+.+
T Consensus 245 ~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 245 MAADATADAVVISGLA-PISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEE
Confidence 4444568998887532 344577788999999999988
No 391
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.48 E-value=29 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=34.0
Q ss_pred ccccccccccccccccchhhhhhhcccccceeecccccccccccccCCcceeeEEEEE
Q 013681 14 NFFFSPCVSRSLHRSQNVIKFCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQRAE 71 (438)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~~~I~~i~ 71 (438)
-|.||-|..-+-+|+. + .-+||.|+|.++.-...|+..+|-+..|.
T Consensus 30 lFLfsD~lEi~kkR~k-v-----------~~~~KSP~~~~~~~~~~KHi~lmpLs~Ik 75 (129)
T cd01229 30 LFLFNDCLEIARKRHK-V-----------IGTFKSPHGSTRPPASLKHIHLMPLSQIK 75 (129)
T ss_pred EEEecchHHHhhhccc-c-----------cCCcCCCCCCCCCCcccceEEEeEhHHeE
Confidence 4788888777767753 2 23488899998888888888888776665
No 392
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=32.33 E-value=7e+02 Score=28.58 Aligned_cols=126 Identities=14% Similarity=0.203 Sum_probs=75.7
Q ss_pred HHHH-HHHHHHHhhcCCcEEEEecCCCchHHHH-HHHHHHhhCC--CcEE-----EEeCCCC-CCHHHHHHHHHHhhhCC
Q 013681 205 PAEA-SELASKYCKLGFSTLKLNVGRNITADFD-VLQAIHAVHP--HCSF-----ILDANEG-YTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 205 ~~~~-~~~~~~~~~~Gf~~iKlKvG~d~~~di~-~l~aiR~~~~--~~~L-----~vDAN~~-~s~~~A~~~l~~L~~~~ 274 (438)
|+.+ ...+++....|...|.+-=.-+.-+.++ -+.++++.+. +..+ .+|.|.. |+.+....+++.|++.+
T Consensus 628 PDnVi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~G 707 (1149)
T COG1038 628 PDNVIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAG 707 (1149)
T ss_pred chHHHHHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcC
Confidence 4555 4557777788988888754322112222 3678888663 3333 2677765 59999999999999999
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC---CCCCHHHHHHHHHcCCccEE
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE---SCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE---sl~~~~d~~~ll~~~a~d~i 331 (438)
.||.-|-+-----....-..|-.++|+.+.+||-+-- +=.+......+++++ +|++
T Consensus 708 aHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AG-vDiv 766 (1149)
T COG1038 708 AHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAG-VDIV 766 (1149)
T ss_pred CcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHHHHcC-Cchh
Confidence 8864443321111122333455566778899996643 334444556666654 5553
No 393
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=32.29 E-value=5.2e+02 Score=25.79 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=55.5
Q ss_pred HHHHHHHhhCCCcEEEEeCCC----CCCHHHHHHHHHHhhhCCC--CCceE-e--cCCCCCChhhHHHHHHhhccccCCe
Q 013681 236 DVLQAIHAVHPHCSFILDANE----GYTSEEAVEVLGKLNDMGV--IPVLF-E--QPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 236 ~~l~aiR~~~~~~~L~vDAN~----~~s~~~A~~~l~~L~~~~l--~~~~i-E--qPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+-++.+|+..++..+.+--|. .++++++.+..+.++...+ |+... | +|-...+++.+.+.-+.+++..++|
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vP 180 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVP 180 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence 566777777776555544333 5688888887777754322 21010 2 3333445643322112233467999
Q ss_pred EEEcCC--CCCHHHHHHHHHcCCccEEEec
Q 013681 307 VVADES--CRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 307 Ia~dEs--l~~~~d~~~ll~~~a~d~i~lk 334 (438)
|..=|. -.+.++++.+.+. .+|+|.+.
T Consensus 181 VivK~~g~g~s~~~a~~l~~~-Gvd~I~vs 209 (326)
T cd02811 181 VIVKEVGFGISRETAKRLADA-GVKAIDVA 209 (326)
T ss_pred EEEEecCCCCCHHHHHHHHHc-CCCEEEEC
Confidence 998653 2456777777665 58888863
No 394
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=32.26 E-value=2.9e+02 Score=29.82 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEec--CC-CCCChhhHHHHHHhhccccCCeEEE-c----CCC--CCHHHHHHHHHcC
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVA-D----ESC--RSLNDVQKVMQEN 326 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl-~~~d~~~~a~L~~~~r~~~~iPIa~-d----Esl--~~~~d~~~ll~~~ 326 (438)
.|+.++-+++++.|.++|+. +||= |. .+.|.+.++++++. ......|+. . +.+ .....++.+++.+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd--~IE~G~p~~s~~d~~~v~~i~~~--~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~ 94 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIH--YIEGGWPGANPKDVQFFWQLKEM--NFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAE 94 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHHh--CCCCcEEEEEeeecCCCCCCchHHHHHHHhcCC
Confidence 47999999999999999986 9998 55 35667777777631 111233432 1 111 1123456666654
Q ss_pred CccEEEe-----------cCCc--ch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 327 LASVVNI-----------KLAK--FG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 327 a~d~i~l-----------k~~~--~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+.+.+ +..+ -- +....+.+++|+++|..+....
T Consensus 95 -~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~ 142 (526)
T TIGR00977 95 -TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDA 142 (526)
T ss_pred -CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 334443 2211 12 4445677999999999986543
No 395
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=32.10 E-value=5.9e+02 Score=26.29 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=49.2
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc---c--hHHHHHHHHHHHHHc--CCeEEEc
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK---F--GVLGTLQIIKATRKS--GLHLMID 360 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~---~--Gi~~~~~~~~~A~~~--gi~~~~~ 360 (438)
+|+.++.|++ .+++||..-+- .+.+|.+.+++.+ +|+|.+.-.- . |+....-+.++++.. .++++..
T Consensus 241 tW~~i~~lr~----~~~~pvivKgV-~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 241 TWEDLAFLRE----WTDLPIVLKGI-LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CHHHHHHHHH----hcCCCEEEecC-CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 6888888875 68999999865 7789999999875 8887775321 1 122233334444433 4888888
Q ss_pred cCCchhH
Q 013681 361 GMIETRL 367 (438)
Q Consensus 361 s~~es~i 367 (438)
+-+-.+.
T Consensus 315 GGIr~G~ 321 (383)
T cd03332 315 SGVRTGA 321 (383)
T ss_pred CCcCcHH
Confidence 7665443
No 396
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=31.94 E-value=1.6e+02 Score=28.50 Aligned_cols=96 Identities=11% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHhhhCCCC--CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 258 YTSEEAVEVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~--~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+++.+ +++..+++|.. +..-|++.-.+.++.++.+++ .+.+||---+-++++.++...-..+ .|.|.+=.
T Consensus 66 ~dp~~---ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~----~v~~PvL~KDFiiD~yQI~~Ar~~G-ADavLLI~ 137 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRA----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIV 137 (254)
T ss_pred CCHHH---HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHH----hcCCCeeeccCCCCHHHHHHHHHcC-cccHHHHH
Confidence 45554 44555555421 234577777888888887765 6899999999999999987666554 67666554
Q ss_pred CcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 336 AKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
..++=....++.+.|++.|+.+.+-.
T Consensus 138 ~~L~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 138 AALDDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HhcCHHHHHHHHHHHHHcCCeeEEEE
Confidence 44444567899999999999987543
No 397
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.91 E-value=2.4e+02 Score=26.19 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=43.3
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCC
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGL 355 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi 355 (438)
+++..+++++ ..++|+..+-.+.++++++++++.+ +|.+.+.-.. +.....+.+++++++.
T Consensus 61 ~~~~i~~i~~----~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~--l~dp~~~~~i~~~~g~ 121 (234)
T cd04732 61 NLELIEEIVK----AVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAA--VKNPELVKELLKEYGG 121 (234)
T ss_pred CHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchH--HhChHHHHHHHHHcCC
Confidence 4666677765 5689999999999999999999876 8887765433 3333345555666665
No 398
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=31.80 E-value=5e+02 Score=25.43 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=53.2
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec----CCC---C-------CChhhHHHHHHhhc
Q 013681 235 FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ----PVH---R-------DDWSGLHDVSNFAR 300 (438)
Q Consensus 235 i~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq----Pl~---~-------~d~~~~a~L~~~~r 300 (438)
++.++.+++..++..+.+--++.+++++..+.++.+++.+. .+||= |-. . .|.+.+.++.+.++
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~ga--d~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~ 164 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGA--DALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVR 164 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCC--CEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHH
Confidence 33344444433456677777777788887777777776554 26663 322 1 24556666666666
Q ss_pred cccCCeEEEcCC--CCCHHHHHHHHHcCCccEEE
Q 013681 301 DTYGISVVADES--CRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 301 ~~~~iPIa~dEs--l~~~~d~~~ll~~~a~d~i~ 332 (438)
+.+++||..==+ ..+..++.+.+....+|.+.
T Consensus 165 ~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 165 EAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 566677655322 12333444444444567665
No 399
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=31.60 E-value=98 Score=30.88 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=50.2
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-CCccEEEecCCcchHHH-HHHHHHHHHHcCCeEEEccCCchh
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-~a~d~i~lk~~~~Gi~~-~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
+..+.+|.+ .+.==+.+-|..+.+.+.++.+. ..++.+|..-+.+- .. -.+++.+|++.|+++.+-|.+.++
T Consensus 138 ~~aL~~l~~-----~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~-R~~e~~l~~~~~~~gi~~~~~spla~G 211 (316)
T COG0667 138 LEALDELVR-----EGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLE-RDAEKELLPLCREEGIGLLAYSPLASG 211 (316)
T ss_pred HHHHHHHHH-----cCCeeEEEecCCCHHHHHHHHHhcCCceeecccCcccc-ccchhHHHHHHHHcCCeEEEecCcccc
Confidence 344555542 45545677788899999888887 36777777777764 12 123899999999999988766544
No 400
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.58 E-value=4.8e+02 Score=25.15 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.5
Q ss_pred CCeEEEccCCch
Q 013681 354 GLHLMIDGMIET 365 (438)
Q Consensus 354 gi~~~~~s~~es 365 (438)
++++...+-+.+
T Consensus 243 ~ipiia~GGI~~ 254 (289)
T cd02810 243 DIPIIGVGGIDS 254 (289)
T ss_pred CCCEEEECCCCC
Confidence 677776655544
No 401
>PRK08445 hypothetical protein; Provisional
Probab=31.16 E-value=1.7e+02 Score=29.64 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC----chHHHHHHHHHHhhCCCcEEEE------e---CCCCCCHHHHHHHHHHh
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN----ITADFDVLQAIHAVHPHCSFIL------D---ANEGYTSEEAVEVLGKL 270 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d----~~~di~~l~aiR~~~~~~~L~v------D---AN~~~s~~~A~~~l~~L 270 (438)
+++++.+.+++..+.|.+.|-+--|.+ ++.=.+.++.|++.+|++.+.. | .-+.++.+| .+++|
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e---~L~~L 150 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKE---VLERL 150 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHH---HHHHH
Confidence 789999999999899998886644443 3344667788899999887642 2 124555554 55555
Q ss_pred hhCCC
Q 013681 271 NDMGV 275 (438)
Q Consensus 271 ~~~~l 275 (438)
++.|+
T Consensus 151 keAGl 155 (348)
T PRK08445 151 QAKGL 155 (348)
T ss_pred HHcCC
Confidence 55554
No 402
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=30.96 E-value=3.3e+02 Score=27.41 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCC-C------------chHHHHHHHHHHhhCC-CcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 013681 208 ASELASKYCKLGFSTLKLNVGR-N------------ITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLNDM 273 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~-d------------~~~di~~l~aiR~~~~-~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (438)
+...+.++.++|++.+-+-+.. | +++-++=+++..++|- .++|-...-.+.+.+|..++++-..+.
T Consensus 100 L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~ 179 (322)
T COG2896 100 LARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKER 179 (322)
T ss_pred HHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhc
Confidence 4555667777777777776642 1 2333333444444553 477777777778878877777777777
Q ss_pred CCCCceEec
Q 013681 274 GVIPVLFEQ 282 (438)
Q Consensus 274 ~l~~~~iEq 282 (438)
++.+.+||.
T Consensus 180 ~~~lrfIE~ 188 (322)
T COG2896 180 GAQLRFIEL 188 (322)
T ss_pred CCceEEEEE
Confidence 765567763
No 403
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=30.82 E-value=4.2e+02 Score=25.33 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=49.8
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHH-------HHHHHHHHHHcCCeEEEccCCchh
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG-------TLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~-------~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
..++.||+|.-=.+...+..+-+ -.+|++-+|.+.+. +.. ...++++|++.|+.++.-+ .|+.
T Consensus 147 ~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG-VEt~ 217 (256)
T COG2200 147 ELGVRIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG-VETE 217 (256)
T ss_pred HCCCeEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee-cCCH
Confidence 47899999998788877765554 67999999998875 432 5668999999999999876 4663
No 404
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.52 E-value=3.1e+02 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 231 ITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 231 ~~~di~~l~aiR~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
+++-++.++.+++.+-. +.+.+-.-.+++.++..++++.+.+.++.+.++|-
T Consensus 138 ~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~ 190 (334)
T TIGR02666 138 LEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIEL 190 (334)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 44455556666665533 55544333455667777777777777765556654
No 405
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.26 E-value=2.2e+02 Score=29.69 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=27.8
Q ss_pred CccEEEe-cCCcch-HHHHHHHHHHHHHcCCeEEEc
Q 013681 327 LASVVNI-KLAKFG-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 327 a~d~i~l-k~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
.++++++ |-.| | ++...+++++|+++|+++.+.
T Consensus 143 ~~~~vVLSDY~K-G~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 143 SFDALVLSDYAK-GVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred cCCEEEEecccc-ccchhHHHHHHHHHHcCCcEEEC
Confidence 5777776 6666 7 999999999999999999874
No 406
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.86 E-value=6.1e+02 Score=25.77 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=81.0
Q ss_pred HHHHHHHhhcC--CcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CC-----CCC
Q 013681 209 SELASKYCKLG--FSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MG-----VIP 277 (438)
Q Consensus 209 ~~~~~~~~~~G--f~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~-----l~~ 277 (438)
.+++++++++| ...+-+.+.. .-+.-++.++.||+.+|+..+. +..--+++.|.+.++.=.+ .+ ++.
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi--aGNV~T~e~a~~Li~aGAD~ikVgiGpGSict 186 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM--AGNVVTGEMVEELILSGADIVKVGIGPGSVCT 186 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE--EecccCHHHHHHHHHcCCCEEEEcccCCCccc
Confidence 45677777775 8888888864 4466778899999988885544 2335678888776664221 01 110
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
--.-..+...++....+.++.++ ..++||..|--+....|+...|..+ .|.+.+-
T Consensus 187 tR~~~Gvg~pqltAv~~~a~aa~-~~~v~VIaDGGIr~~gDI~KALA~G-Ad~VMlG 241 (343)
T TIGR01305 187 TRTKTGVGYPQLSAVIECADAAH-GLKGHIISDGGCTCPGDVAKAFGAG-ADFVMLG 241 (343)
T ss_pred CceeCCCCcCHHHHHHHHHHHhc-cCCCeEEEcCCcCchhHHHHHHHcC-CCEEEEC
Confidence 01122333236667777666543 4589999999999999999999875 7777776
No 407
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=29.84 E-value=6.5e+02 Score=26.09 Aligned_cols=152 Identities=11% Similarity=0.149 Sum_probs=81.2
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCc--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
+...++++..+.++++.+.|.+.|++ |.+. ....+.++++++.++...+..|..-.=.+.. .++.+.+.+..
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie~--g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~---~v~~a~~aGAd- 83 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIEA--GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAI---EVEMAAKAGAD- 83 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEEe--CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHH---HHHHHHHcCCC-
Confidence 44568888888899988999999964 5322 4456778888887776667777433222333 33333333322
Q ss_pred ceEecCCCCC--ChhhHHHHHHhhccccCCeEEEc-CCCCC-HHHHHHHHHcCCccEEEecCCcc----hHHHHHHHHHH
Q 013681 278 VLFEQPVHRD--DWSGLHDVSNFARDTYGISVVAD-ESCRS-LNDVQKVMQENLASVVNIKLAKF----GVLGTLQIIKA 349 (438)
Q Consensus 278 ~~iEqPl~~~--d~~~~a~L~~~~r~~~~iPIa~d-Esl~~-~~d~~~ll~~~a~d~i~lk~~~~----Gi~~~~~~~~~ 349 (438)
++==|...+ ......+.++ +.++++..+ =+..+ .+.++.+.+. .+|++.+.+..- +......+.++
T Consensus 84 -gV~v~g~~~~~~~~~~i~~a~----~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~pg~~~~~~~~~~~~~l~~l 157 (430)
T PRK07028 84 -IVCILGLADDSTIEDAVRAAR----KYGVRLMADLINVPDPVKRAVELEEL-GVDYINVHVGIDQQMLGKDPLELLKEV 157 (430)
T ss_pred -EEEEecCCChHHHHHHHHHHH----HcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEEeccchhhcCCChHHHHHHH
Confidence 111011111 1222223332 367777665 23333 3334555554 589998776431 11111233334
Q ss_pred HHHcCCeEEEccCC
Q 013681 350 TRKSGLHLMIDGMI 363 (438)
Q Consensus 350 A~~~gi~~~~~s~~ 363 (438)
.+..++++++++-+
T Consensus 158 ~~~~~iPI~a~GGI 171 (430)
T PRK07028 158 SEEVSIPIAVAGGL 171 (430)
T ss_pred HhhCCCcEEEECCC
Confidence 44567888776633
No 408
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=29.64 E-value=6.3e+02 Score=25.91 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhhcC-CcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCC---CHHHHHHHHHHhhhCCCC
Q 013681 202 AVSPAEASELASKYCKLG-FSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGY---TSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~G-f~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~---s~~~A~~~l~~L~~~~l~ 276 (438)
+.+++++.+.++++++.+ -.-|=+|++. +..++++.. +.+.++|+ |.||..++= ++...+ +..++.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~--~~~ag~D~-ItIDG~~GGTGAap~~~~------d~~GlP 254 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG--AAKAGADF-ITIDGAEGGTGAAPLTSM------DHVGLP 254 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH--HHHTT-SE-EEEE-TT---SSEECCHH------HHC---
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh--hhhccCCE-EEEeCCCCCCCCCchhHH------hhCCCc
Confidence 568999999999998877 6677777764 222333322 44567774 889998652 221111 112221
Q ss_pred CceEecCCCCCChhhHHHHHHhhcc---ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 277 PVLFEQPVHRDDWSGLHDVSNFARD---TYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 277 ~~~iEqPl~~~d~~~~a~L~~~~r~---~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
| ..++++..+.+++ +-.+.+..+--+.+..|+...+..+ .|.+.+-
T Consensus 255 --~---------~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-AD~v~ig 303 (368)
T PF01645_consen 255 --T---------EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-ADAVYIG 303 (368)
T ss_dssp --H---------HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-S
T ss_pred --H---------HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-CCeeEec
Confidence 1 1111111111110 2357788888899999998888876 4665543
No 409
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.29 E-value=5.3e+02 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEcc
Q 013681 340 VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s 361 (438)
+...++.++.++++|+.+..|-
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeE
Confidence 6777888999999999986553
No 410
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.26 E-value=4.3e+02 Score=23.81 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred eeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCc--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
.+...++++..+.++.+.+. .+.+|+ |..+ ..-.+.++.+|+.++++.+.+|.--. ++.. .+++.+.+.+..
T Consensus 6 a~d~~~~~~~~~~~~~l~~~-i~~iei--g~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~-~~~~--~~~~~~~~aGad 79 (202)
T cd04726 6 ALDLLDLEEALELAKKVPDG-VDIIEA--GTPLIKSEGMEAVRALREAFPDKIIVADLKTA-DAGA--LEAEMAFKAGAD 79 (202)
T ss_pred EEcCCCHHHHHHHHHHhhhc-CCEEEc--CCHHHHHhCHHHHHHHHHHCCCCEEEEEEEec-cccH--HHHHHHHhcCCC
Confidence 34556788888888888665 888555 6432 22367788888877776655542111 2211 234555555543
Q ss_pred CceEecCCCC--CChhhHHHHHHhhccccCCeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCcch-----HHHHHHHHH
Q 013681 277 PVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKFG-----VLGTLQIIK 348 (438)
Q Consensus 277 ~~~iEqPl~~--~d~~~~a~L~~~~r~~~~iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~~G-----i~~~~~~~~ 348 (438)
++==|... +..+.+.+.++ +.++++..+ =+..+..+..+++.. .+|++.+.+...+ .....++.+
T Consensus 80 --~i~~h~~~~~~~~~~~i~~~~----~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 80 --IVTVLGAAPLSTIKKAVKAAK----KYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred --EEEEEeeCCHHHHHHHHHHHH----HcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcCcccccccCCCCCHHHHHH
Confidence 33322211 12233333332 367888765 355677777775554 6899888764322 111223333
Q ss_pred HHHHcCCeEEEccCC
Q 013681 349 ATRKSGLHLMIDGMI 363 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~ 363 (438)
+.+..++++++.+-.
T Consensus 153 ~~~~~~~~i~~~GGI 167 (202)
T cd04726 153 VKKLLGVKVAVAGGI 167 (202)
T ss_pred HHhhcCCCEEEECCc
Confidence 333367888877543
No 411
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=28.67 E-value=2.4e+02 Score=28.90 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=49.8
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch---HH----HHHHHHHHHHHcCCeEEEc
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG---VL----GTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G---i~----~~~~~~~~A~~~gi~~~~~ 360 (438)
.|+..+.|++ ..+.||.+-+ +.+.+|.+++++.+ +|+|.+ +.+| +. ....+.++++..+++++..
T Consensus 224 ~w~~i~~ir~----~~~~pviiKg-V~~~eda~~a~~~G-~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 224 NWQDLRWLRD----LWPHKLLVKG-IVTAEDAKRCIELG-ADGVIL--SNHGGRQLDDAIAPIEALAEIVAATYKPVLID 295 (361)
T ss_pred CHHHHHHHHH----hCCCCEEEec-CCCHHHHHHHHHCC-cCEEEE--CCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe
Confidence 4777777765 6889998887 68999999999875 777654 3443 22 2444556666678998888
Q ss_pred cCCchh
Q 013681 361 GMIETR 366 (438)
Q Consensus 361 s~~es~ 366 (438)
+-+.++
T Consensus 296 GGIr~g 301 (361)
T cd04736 296 SGIRRG 301 (361)
T ss_pred CCCCCH
Confidence 766444
No 412
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=28.66 E-value=6.3e+02 Score=25.56 Aligned_cols=133 Identities=16% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHhhcC-Cc--EEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 203 VSPAEASELASKYCKLG-FS--TLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~G-f~--~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
.|.+.+.+.++++.... +. .+-+|. ....+.++.+++.|- .+|+......+.|++.......-.+ .
T Consensus 17 ~d~~~l~~~~~~l~~~~~~~~~~yAvKa----N~~~~vl~~l~~~G~----g~dvaS~~El~~al~~~~G~~~~~I---i 85 (368)
T cd06840 17 YDLETVRARARQVSALKAVDSLFYAIKA----NPHPDVLRTLEEAGL----GFECVSIGELDLVLKLFPDLDPRRV---L 85 (368)
T ss_pred ecHHHHHHHHHHHHhCCCCCeEEEEecc----CCCHHHHHHHHHcCC----eEEEcCHHHHHHHHHcccCCCcceE---E
Confidence 36777777777764321 11 223333 335677788877663 3455443333332221111222222 3
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc--CCccEEEec----------------CCcch--
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIK----------------LAKFG-- 339 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~--~a~d~i~lk----------------~~~~G-- 339 (438)
+=-|.+.. ++++... +.++.|..| +..+++++.+. .+-=.+.+. .+|.|
T Consensus 86 f~gp~K~~--~~l~~a~-----~~gv~i~~D----s~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~ 154 (368)
T cd06840 86 FTPNFAAR--SEYEQAL-----ELGVNVTVD----NLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGLD 154 (368)
T ss_pred EcCCCCCH--HHHHHHH-----HCCCEEEEC----CHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCCC
Confidence 44566542 2333222 246666543 34444433321 111122333 36789
Q ss_pred HHHHHHHHHHHHHcCCeE
Q 013681 340 VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~ 357 (438)
..++.++++++++.|+.+
T Consensus 155 ~~~~~~~l~~~~~~~l~l 172 (368)
T cd06840 155 VDELDEARDLAKKAGIIV 172 (368)
T ss_pred HHHHHHHHHHHHhCCCcE
Confidence 667888888888888765
No 413
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=28.64 E-value=5.5e+02 Score=24.92 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~ 309 (438)
+.++++..+++++.+.+.+.+...|-+-+-.-....+.++.+.++++.+ +||..
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~ 198 (274)
T cd07938 144 GEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLAL 198 (274)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEE
Confidence 3567888888888888887654456666655455555555554444442 55543
No 414
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=28.52 E-value=6.7e+02 Score=25.83 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc-hHHHHHHHHHHhhCCCcEEEEeC-CCCCC---HHHHHHHH-HHhhhCCCC-
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI-TADFDVLQAIHAVHPHCSFILDA-NEGYT---SEEAVEVL-GKLNDMGVI- 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~-~~di~~l~aiR~~~~~~~L~vDA-N~~~s---~~~A~~~l-~~L~~~~l~- 276 (438)
|.+.+.+.++..++.|++.|---.+-.. ..+...=+++.+.. .-++.|-. --.|. .++..+++ +.|+.++..
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~-Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy 110 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGY-REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDY 110 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcc-cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCch
Confidence 4555667777888888888776654311 22222223333322 22222222 12242 34444444 334443321
Q ss_pred C-ceEecCCCCCChhhHHHH-----HHhhccccCCeEEEcCCCC-CHHHHHHHHHcCCccEEEecCCcch--HHHHHHHH
Q 013681 277 P-VLFEQPVHRDDWSGLHDV-----SNFARDTYGISVVADESCR-SLNDVQKVMQENLASVVNIKLAKFG--VLGTLQII 347 (438)
Q Consensus 277 ~-~~iEqPl~~~d~~~~a~L-----~~~~r~~~~iPIa~dEsl~-~~~d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~ 347 (438)
+ +++=.-+..+.|+.+.++ .+.+++.-.|.-+ |=|.+ +.+.+.+++.....|++|+.-..+- -....+.+
T Consensus 111 ~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~-GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l 189 (391)
T COG1453 111 IDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNA-GFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGL 189 (391)
T ss_pred hhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEe-eecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHH
Confidence 0 122222222333332222 1222223445444 44555 4556799999999999999887763 22225788
Q ss_pred HHHHHcCCeEEEccCC
Q 013681 348 KATRKSGLHLMIDGMI 363 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~ 363 (438)
+.|.++|+++.+=+.+
T Consensus 190 ~~A~~~~~gI~IMeP~ 205 (391)
T COG1453 190 KYAASKGLGIFIMEPL 205 (391)
T ss_pred HHHHhCCCcEEEEeeC
Confidence 9999999999886655
No 415
>PRK15029 arginine decarboxylase; Provisional
Probab=28.51 E-value=4.3e+02 Score=29.89 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHhhcCCcE---EEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 202 AVSPAEASELASKYCKLGFST---LKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~---iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
+.+|+....+++++.++=|.+ +=+=-|. -......+.. ..++=.+.||=|.-=|.-.|+.+ .++.+
T Consensus 200 L~~p~G~I~eAq~~aA~~fgA~~t~FlvNGS----T~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L------~ga~P 269 (755)
T PRK15029 200 LLDHTGAFGESEKYAARVFGADRSWSVVVGT----SGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL------TGAKP 269 (755)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCcEEEEeCCh----hHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH------cCCeE
Confidence 456777766666665543322 2222232 1222334444 34666888999998666555443 34445
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC-c---------cEEEecCCcch-HHHHHHH
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL-A---------SVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a-~---------d~i~lk~~~~G-i~~~~~~ 346 (438)
.|+ .|.. . +.+++-....+..+++++++.++... . -++..-|+.-| .....++
T Consensus 270 vyl-~P~~-~--------------~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I 333 (755)
T PRK15029 270 VYM-VPSR-N--------------RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEA 333 (755)
T ss_pred EEe-cccc-c--------------ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHH
Confidence 687 4432 1 24555554555667788877775431 1 25666789999 8899999
Q ss_pred HHHHHHcCCeEEEccCC
Q 013681 347 IKATRKSGLHLMIDGMI 363 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~ 363 (438)
++.|+++|+++.+--++
T Consensus 334 ~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 334 QDLLEKTSDRLHFDEAW 350 (755)
T ss_pred HHHHHhcCCeEEEECcc
Confidence 99999999999876554
No 416
>PRK00208 thiG thiazole synthase; Reviewed
Probab=28.42 E-value=5.5e+02 Score=24.84 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=74.1
Q ss_pred eeCCCCHHHHHHHHHHHhhc-CCcEEEEecCCC----chHHHHHHHHHHhh-CCCcEEE-EeCCCCCCHHHHHHHHHHhh
Q 013681 199 TIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~d----~~~di~~l~aiR~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~ 271 (438)
+.+..+.+|....++-.++. |-..||+.|=.| +.+-.+.+++.+++ -+++... +=++ ++. ..++|+
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~---d~~----~ak~l~ 141 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD---DPV----LAKRLE 141 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC---CHH----HHHHHH
Confidence 34456777776555555553 568999998543 34556677777774 3344333 2111 333 445555
Q ss_pred hCCCCCceEecC----CCCC----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 272 DMGVIPVLFEQP----VHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 272 ~~~l~~~~iEqP----l~~~----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+++-. .+ -| +-.+ +.+.++.+++ ..++||..|=-+.+++|+.+.++.+ +|.+.+-
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~gi~~~~~i~~i~e----~~~vpVIveaGI~tpeda~~AmelG-AdgVlV~ 204 (250)
T PRK00208 142 EAGCA--AV-MPLGAPIGSGLGLLNPYNLRIIIE----QADVPVIVDAGIGTPSDAAQAMELG-ADAVLLN 204 (250)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 55543 44 33 2211 3555566654 4789999999999999999999986 6666543
No 417
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.36 E-value=4.2e+02 Score=24.13 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.3
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-H-------HHHHHHHHHHHHcCCeEEEccCCch
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-V-------LGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i-------~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
.++.|++|.--.+..++..+.. -.+|+|-+|...+- + .-...+..+|+..|+.+...+ +|+
T Consensus 144 ~G~~l~ld~~g~~~~~~~~l~~-~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g-Ve~ 212 (240)
T cd01948 144 LGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG-VET 212 (240)
T ss_pred CCCeEEEeCCCCcHhhHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe-cCC
Confidence 5777888876666666655444 46999998875542 2 235668899999999999887 355
No 418
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=28.11 E-value=5.4e+02 Score=24.58 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
.+.++..+.++.+.+.|+..|-+-+...-+.|.+.++.+++..++.++. +-...+.++. +...+.++. +|-=
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~--~~~r~~~~~v----~~a~~~g~~--~i~i 88 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLI--VWCRAVKEDI----EAALRCGVT--AVHI 88 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEE--EeccCCHHHH----HHHHhCCcC--EEEE
Confidence 3678888889999999999988855433356778889998865555443 2222334332 222233332 2222
Q ss_pred --CCCCCC------------hhhHHHHHHhhccccCCeEE---EcCCCCCHHHHH----HHHHcCCccEEEecCCc-ch-
Q 013681 283 --PVHRDD------------WSGLHDVSNFARDTYGISVV---ADESCRSLNDVQ----KVMQENLASVVNIKLAK-FG- 339 (438)
Q Consensus 283 --Pl~~~d------------~~~~a~L~~~~r~~~~iPIa---~dEsl~~~~d~~----~ll~~~a~d~i~lk~~~-~G- 339 (438)
|+...+ ++.+....+.+++ .+..+. .|.+-.+++.+. ++.+.+ ++.|.+.=+. ..
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~ 166 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD-RGLFVSVGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTVGILD 166 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCC
Confidence 332111 1222233333332 344443 234445666553 333444 6666665443 22
Q ss_pred HHHHHHHHHHH-HHcCCeEEEccCCchhHHHH
Q 013681 340 VLGTLQIIKAT-RKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 340 i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~ 370 (438)
.....+++... +..++++.+|+-...+++++
T Consensus 167 P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~A 198 (259)
T cd07939 167 PFTTYELIRRLRAATDLPLEFHAHNDLGLATA 198 (259)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCChHHH
Confidence 44556665544 45578888887655555443
No 419
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.59 E-value=4.3e+02 Score=25.20 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCcEEEEecCCC--chHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHHHHHH
Q 013681 208 ASELASKYCKLGFSTLKLNVGRN--ITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVEVLG 268 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~d--~~~di~~l~aiR~~~~~~~L~vDAN~~-~s~~~A~~~l~ 268 (438)
..+.++.+.+.|...+.+..+.. ...|++.++.+++..+++. |=+||. ++.++|.++++
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ip--IIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKI--IIGNNSIDDIESAKEMLK 211 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCc--EEEECCcCCHHHHHHHHH
Confidence 34445555566666666553321 1135556666666433222 223443 45666666664
No 420
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=27.57 E-value=2.4e+02 Score=28.06 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHHHHHHh-hCCC-cEEE--EeC-------------CCCCCHHHHHHHHHHhhhCCC-CCceEecCCCCCChhhHHHHH
Q 013681 235 FDVLQAIHA-VHPH-CSFI--LDA-------------NEGYTSEEAVEVLGKLNDMGV-IPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 235 i~~l~aiR~-~~~~-~~L~--vDA-------------N~~~s~~~A~~~l~~L~~~~l-~~~~iEqPl~~~d~~~~a~L~ 296 (438)
...++.||. .|.. +-|. +|+ -++||..|++..++.|+.+++ .-.-+|=- ++.|.+++-.|+
T Consensus 265 ~~i~e~ir~~~G~k~vYiSiDID~LDPafAPgtgtpE~gGlt~re~l~ILrglqGl~lVGaDvVEvs-P~yD~ae~Tal~ 343 (361)
T KOG2964|consen 265 DPIVERIRQRVGDKLVYISIDIDVLDPAFAPGTGTPETGGLTTREMLNILRGLQGLNLVGADVVEVS-PPYDVAEMTALA 343 (361)
T ss_pred HHHHHHHHHhcCCceEEEEEeecccCcccCCCCCCCCCCCcCHHHHHHHHhhCccccccccceEEec-CccchhhhHHHH
Confidence 567889998 5643 4444 444 378999999999999987653 11235532 344577776665
Q ss_pred H
Q 013681 297 N 297 (438)
Q Consensus 297 ~ 297 (438)
+
T Consensus 344 A 344 (361)
T KOG2964|consen 344 A 344 (361)
T ss_pred H
Confidence 3
No 421
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=27.42 E-value=5.7e+02 Score=24.70 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=74.7
Q ss_pred eeCCCCHHHHHHHHHHHhhc-CCcEEEEecCCC----chHHHHHHHHHHhh-CCCcEEE-EeCCCCCCHHHHHHHHHHhh
Q 013681 199 TIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~d----~~~di~~l~aiR~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~ 271 (438)
+.+..+.+|....++-.++. |-+.||+.|=.| +.+-.+.+++.+++ -+++... +=+ =++. ..++|+
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~---dd~~----~ar~l~ 141 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCT---DDPV----LAKRLE 141 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeC---CCHH----HHHHHH
Confidence 34456777776655555554 678999998543 34556677777774 3344333 211 1333 445555
Q ss_pred hCCCCCceEecC----CCCC----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 272 DMGVIPVLFEQP----VHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 272 ~~~l~~~~iEqP----l~~~----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+++-. .+ -| +-.+ +.+.++.+++ ..++||..|=-+.+++|+.++++.+ +|.+.+-
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelG-AdgVlV~ 204 (248)
T cd04728 142 DAGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLLN 204 (248)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 55543 44 33 2221 4555566654 5789999999999999999999986 5555543
No 422
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=27.11 E-value=5.8e+02 Score=24.66 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEE--eCC-CCCCHHHHHHHHHHhhhCCCCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFIL--DAN-EGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~v--DAN-~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.+.++..+.++.+.+.|++.|-+-.+..-.+|.+.++++++.. ++.++.+ .++ ..+.... .+.++++.+.++...
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~a~~~g~~~i 95 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEE-DPNLQALLEAGTPVV 95 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccc-hHHHHHHHhCCCCEE
Confidence 3677888889999999999998844332356788888888753 3444433 222 1121110 123444445554322
Q ss_pred eEecCCCC------------CChhhHHHHHHhhccccCCeEEE------cCCCCCHHHH----HHHHHcCCccEEEecCC
Q 013681 279 LFEQPVHR------------DDWSGLHDVSNFARDTYGISVVA------DESCRSLNDV----QKVMQENLASVVNIKLA 336 (438)
Q Consensus 279 ~iEqPl~~------------~d~~~~a~L~~~~r~~~~iPIa~------dEsl~~~~d~----~~ll~~~a~d~i~lk~~ 336 (438)
.|--|... +.++.+.++.+.++ +.+..+.. |-+-.+++.+ +++.+.+ ++.|.+.=+
T Consensus 96 ~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-~~~i~l~DT 173 (273)
T cd07941 96 TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLK-SHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWLVLCDT 173 (273)
T ss_pred EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC-CCEEEEecC
Confidence 44444321 12223333333333 34566544 2223445544 3334444 566655433
Q ss_pred c-ch-HHHHHHHHHHHH-HcC-CeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 337 K-FG-VLGTLQIIKATR-KSG-LHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 337 ~-~G-i~~~~~~~~~A~-~~g-i~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
. .. .....+++...+ +.+ +++.+|+-..-+++ .+..+++-.....++|
T Consensus 174 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla--~An~laA~~aGa~~id 225 (273)
T cd07941 174 NGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLA--VANSLAAVEAGATQVQ 225 (273)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcH--HHHHHHHHHcCCCEEE
Confidence 3 22 344555555544 345 77877775444443 3333333322345554
No 423
>PRK14863 bifunctional regulator KidO; Provisional
Probab=26.87 E-value=2.2e+02 Score=27.90 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=46.3
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHH-HHHHHHHHHHHcCCeEEEccCCchh
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~-~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
++.+.+|.+ .+.==..|=|..+..++.++.....++++|+..+.+--. +..++..+|+++||.++..+.+.++
T Consensus 124 ~~~l~~l~~-----~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G 197 (292)
T PRK14863 124 WERLQALKD-----QGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG 197 (292)
T ss_pred HHHHHHHHH-----cCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc
Confidence 455555543 232223344556777777777777889999887765211 1235788999999999877665443
No 424
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=26.76 E-value=4e+02 Score=25.27 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHhhh-CCCCCceEe------cCCCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCcc
Q 013681 258 YTSEEAVEVLGKLND-MGVIPVLFE------QPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLAS 329 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~-~~l~~~~iE------qPl~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d 329 (438)
.+.++...+...-++ +++++.|+| +|++ .+..+++++ .+ ++||..|=-+.+.++++++++.+ +|
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~---~e~i~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-AD 203 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP---PELVAEVKK----VLDKARLFVGGGIRSVEKAREMAEAG-AD 203 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC---HHHHHHHHH----HcCCCCEEEecCCCCHHHHHHHHHcC-CC
Confidence 455665555444444 466667899 4443 455566654 34 79999999999999999999865 77
Q ss_pred EEEec
Q 013681 330 VVNIK 334 (438)
Q Consensus 330 ~i~lk 334 (438)
.+++-
T Consensus 204 ~VVVG 208 (223)
T TIGR01768 204 TIVTG 208 (223)
T ss_pred EEEEC
Confidence 77663
No 425
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=26.23 E-value=3.7e+02 Score=28.24 Aligned_cols=135 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhc--CCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 204 SPAEASELASKYCKL--GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~--Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
+++.+.++++.+.+. |.+.|-+ .+..+-.+.+++..+-+...+..+...++...+.++ +.++.|++.|.. .+.
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f-~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~--e~l~~l~~aG~~--~v~ 302 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFF-DDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDY--ETLKVMKENGLR--LLL 302 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEE-eCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCH--HHHHHHHHcCCC--EEE
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-h-----HHHHHHHHHHHHHcCC
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G-----VLGTLQIIKATRKSGL 355 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-G-----i~~~~~~~~~A~~~gi 355 (438)
=.+...+-+.++.+.+. .+.+++.+.++.-.-..+.+....+ | .....+.++.+.+.+.
T Consensus 303 iGiES~s~~~L~~~~K~---------------~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~ 367 (472)
T TIGR03471 303 VGYESGDQQILKNIKKG---------------LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNP 367 (472)
T ss_pred EcCCCCCHHHHHHhcCC---------------CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q ss_pred eEE
Q 013681 356 HLM 358 (438)
Q Consensus 356 ~~~ 358 (438)
...
T Consensus 368 ~~~ 370 (472)
T TIGR03471 368 HTI 370 (472)
T ss_pred Cce
No 426
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.83 E-value=4e+02 Score=26.48 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHhhcCCcEEEEecCC-------------CchHHHHHHHHHHhhCC-CcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-------------d~~~di~~l~aiR~~~~-~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
.++++.+.|...+-+-+.. ++++-++-++++++.+- .+.+..=...+.+.+|..++++-+.++++.
T Consensus 106 ~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 106 FAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred HHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 4566667777777666531 24445555666666543 455543334456778888888888888876
Q ss_pred CceEecCCC
Q 013681 277 PVLFEQPVH 285 (438)
Q Consensus 277 ~~~iEqPl~ 285 (438)
+.+|| .++
T Consensus 186 ~~~ie-~mP 193 (329)
T PRK13361 186 IAFIE-EMP 193 (329)
T ss_pred EEEEe-ccc
Confidence 55555 344
No 427
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.72 E-value=2.1e+02 Score=27.56 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHH-hhC--CCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIH-AVH--PHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR-~~~--~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
.++++..++++++.++|-..|=+-.+.. .+++++++..+- .+- .++.|.||... ++.+.+-++.
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~---~~v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFN---AEVAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCc---HHHHHHHHHh
Confidence 4788999999999999999988877632 566666553333 321 27889999754 4444444433
No 428
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=25.65 E-value=5e+02 Score=24.67 Aligned_cols=125 Identities=15% Similarity=0.232 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC---CCce
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV---IPVL 279 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l---~~~~ 279 (438)
.+|+.. ++++.+.|...+-+..-.....-.+.++.||+.|-..-|.+..+.. .+....++..++-.=+ .+=+
T Consensus 69 ~~P~~~---i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLvMsV~PGf 143 (229)
T PRK09722 69 TDPQDY---IDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITVMTVDPGF 143 (229)
T ss_pred cCHHHH---HHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEEEEEcCCC
Confidence 466654 5567788999988887632122345678899988777777776653 4444566666553211 0012
Q ss_pred EecCCCCCChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 280 FEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
=-|++-++-++-.++|++.+.+ ...+-|..|=.+ +.+.+.++.+.+ +|+++.-
T Consensus 144 ~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~~i~~~~~aG-ad~~V~G 197 (229)
T PRK09722 144 AGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSC-NQKTYEKLMEAG-ADVFIVG 197 (229)
T ss_pred cchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcC-CCEEEEC
Confidence 2344433333344444432211 234556666554 355566666554 6666554
No 429
>PRK08444 hypothetical protein; Provisional
Probab=25.49 E-value=4.3e+02 Score=26.86 Aligned_cols=28 Identities=21% Similarity=0.004 Sum_probs=20.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCeEEEccC
Q 013681 335 LAKFGVLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
|.+.--..++++.+.|++.|+++.-+-+
T Consensus 183 p~k~~~~~~~~i~~~a~~~Gi~~~sg~l 210 (353)
T PRK08444 183 KGKVSSERWLEIHKYWHKKGKMSNATML 210 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeE
Confidence 3343356788888899999999865443
No 430
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=25.41 E-value=3.5e+02 Score=23.62 Aligned_cols=98 Identities=7% Similarity=0.049 Sum_probs=61.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhC--CCCCceEecCCCCCChhhHH-HHHHhhccccCCeEE--EcCCCCCHHHHHHHH
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDM--GVIPVLFEQPVHRDDWSGLH-DVSNFARDTYGISVV--ADESCRSLNDVQKVM 323 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~--~l~~~~iEqPl~~~d~~~~a-~L~~~~r~~~~iPIa--~dEsl~~~~d~~~ll 323 (438)
.+.+-++... .++++++++.+.++ +..+ + . .++-+ .|. +.+++++- ..|...+..++..++
T Consensus 6 ~v~lsv~d~d-K~~l~~~a~~l~~ll~Gf~l--~----A---T~gTa~~L~----~~~Gi~v~~vi~~~~gg~~~i~~~I 71 (142)
T PRK05234 6 RIALIAHDHK-KDDLVAWVKAHKDLLEQHEL--Y----A---TGTTGGLIQ----EATGLDVTRLLSGPLGGDQQIGALI 71 (142)
T ss_pred EEEEEEeccc-hHHHHHHHHHHHHHhcCCEE--E----E---eChHHHHHH----hccCCeeEEEEcCCCCCchhHHHHH
Confidence 3444444443 46778888888887 7541 1 1 11222 233 23467542 445444556788899
Q ss_pred HcCCccEEEe--cCC-cch-HHHHHHHHHHHHHcCCeEEEc
Q 013681 324 QENLASVVNI--KLA-KFG-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 324 ~~~a~d~i~l--k~~-~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
..+.+++|+- ||. +-+ ......+.+.|-.+|+++.-+
T Consensus 72 ~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 72 AEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred HcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 9999999765 543 334 556778999999999999654
No 431
>PRK05443 polyphosphate kinase; Provisional
Probab=25.34 E-value=1.6e+02 Score=32.84 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh---hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~---~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|..|.+-+.+.+++. +.--.++.||+.. -+..|-..++++.+ .|-++.+.|+....|+.+..+.+.+.|++.|++
T Consensus 346 PY~SF~~~~~~i~~A-a~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~ 424 (691)
T PRK05443 346 PYESFDPVVEFLRQA-AADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVH 424 (691)
T ss_pred CccCchHHHHHHHHh-ccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCE
Confidence 455666666655554 2333444455432 12334555666654 488999999999999998889999999999987
Q ss_pred C
Q 013681 277 P 277 (438)
Q Consensus 277 ~ 277 (438)
+
T Consensus 425 V 425 (691)
T PRK05443 425 V 425 (691)
T ss_pred E
Confidence 4
No 432
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.33 E-value=1.9e+02 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHH--cCCeEEEc
Q 013681 312 SCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRK--SGLHLMID 360 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~--~gi~~~~~ 360 (438)
++.+.+++.++++.+ +|+|++|. .|+....+++.+.++ .++.+...
T Consensus 202 Ev~tleea~eA~~~G-aD~I~LDn--~~~e~l~~av~~~~~~~~~i~leAs 249 (288)
T PRK07428 202 ETETLEQVQEALEYG-ADIIMLDN--MPVDLMQQAVQLIRQQNPRVKIEAS 249 (288)
T ss_pred ECCCHHHHHHHHHcC-CCEEEECC--CCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 667899999998764 89999995 445555555555553 34444443
No 433
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.21 E-value=2.6e+02 Score=28.42 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC-----CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR-----NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~-----d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
.+++++.+.++...+.|.+.|-+--|. +++.=.+.++.|++.+|++.+- ++ ..+.+++ ++|++.|+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Ie--i~-~lt~e~~----~~Lk~aGv 173 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIE--VQ-PLNEEEY----KKLVEAGL 173 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccc--cc-cCCHHHH----HHHHHcCC
Confidence 378999999999989999988887563 2344466678888777765543 33 3666654 44554444
No 434
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.21 E-value=6.2e+02 Score=24.36 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|.+.+.+.++.+.+.|.+.+=+--.. ..++=.+.++.+++. ..++.+.+=+.+ -+.+++++.++..++.+..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHHHHHHHcCCC
Confidence 67778888999999998887765321 234444556667764 456677655544 4789999999999988865
Q ss_pred CceEecCCC--CCC---hhhHHHHHHhhccccCCeEEEcC------CCCCHHHHHHHHHcCCccEEEecCCcchHHHHHH
Q 013681 277 PVLFEQPVH--RDD---WSGLHDVSNFARDTYGISVVADE------SCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ 345 (438)
Q Consensus 277 ~~~iEqPl~--~~d---~~~~a~L~~~~r~~~~iPIa~dE------sl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~ 345 (438)
-..+=-|.. ..+ .+-++++++ .+++||.+=. ...+...++++.+ .+.++-+|-+-..+....+
T Consensus 98 ~v~~~~P~~~~~~~~~l~~~~~~ia~----~~~~pi~lYn~P~~~g~~ls~~~~~~L~~--~p~v~giK~s~~~~~~~~~ 171 (284)
T cd00950 98 AALVVTPYYNKPSQEGLYAHFKAIAE----ATDLPVILYNVPGRTGVNIEPETVLRLAE--HPNIVGIKEATGDLDRVSE 171 (284)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHh----cCCCCEEEEEChhHhCCCCCHHHHHHHhc--CCCEEEEEECCCCHHHHHH
Confidence 234444532 111 233444553 5788887532 2345566677774 2788888865422444343
No 435
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=25.05 E-value=3.3e+02 Score=27.58 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHhhhCCCC--CceEecCCCCCChhhHHHHHHhhccc-cCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 258 YTSEEAVEVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~--~~~iEqPl~~~d~~~~a~L~~~~r~~-~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
|++.+ .++..++.|.. +..=|+..-.+.++.++.+++ . +.+||---+-++++.++.+.-.. ..|.|.+=
T Consensus 139 ~dp~~---iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~----~~v~lPvLrKDFIID~yQI~eAr~~-GADAVLLI 210 (338)
T PLN02460 139 FDPVE---IAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRN----AGVKCPLLCKEFIVDAWQIYYARSK-GADAILLI 210 (338)
T ss_pred CCHHH---HHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHH----cCCCCCEeeccccCCHHHHHHHHHc-CCCcHHHH
Confidence 45543 44444544421 235578888888888888774 4 78999999999999998766554 47777665
Q ss_pred CCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 335 LAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
...++=....+++++|+..|+.+.+-.
T Consensus 211 aaiL~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 211 AAVLPDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHhCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 555454468899999999999987543
No 436
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.92 E-value=6.5e+02 Score=24.53 Aligned_cols=42 Identities=7% Similarity=0.028 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 231 ~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
++.=++.++++.+.|.+.--..|..|..+|.+..++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 344444556666667776556899999999999898888865
No 437
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=24.57 E-value=1.1e+02 Score=28.63 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred CcceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCc----EEEEE
Q 013681 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----VGWGE 111 (438)
Q Consensus 61 ~~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~----~G~GE 111 (438)
++|-+-|+++++..+.. ..+.+.---.++|||+..||. +|+|+
T Consensus 82 NGWs~sI~~~~vd~~d~--------~~~k~~vg~~a~VrVtLkDGtyhEDiGyG~ 128 (222)
T KOG4141|consen 82 NGWSSSITSVNVDFVDE--------EEGKFSVGVSAIVRVTLKDGTYHEDIGYGS 128 (222)
T ss_pred Ccccccceeeecceecc--------ccCeEEEeEEEEEEEEEecCcccccccccc
Confidence 68999999999876654 334444556789999999884 58883
No 438
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.57 E-value=7.6e+02 Score=25.18 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=72.5
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHhhhCCC----------CCceEecCCCCCChhhH----------------HHHHHhh--
Q 013681 248 CSFILDANEGYTSEEAVEVLGKLNDMGV----------IPVLFEQPVHRDDWSGL----------------HDVSNFA-- 299 (438)
Q Consensus 248 ~~L~vDAN~~~s~~~A~~~l~~L~~~~l----------~~~~iEqPl~~~d~~~~----------------a~L~~~~-- 299 (438)
.-+.+=.-.--++++|++++++|++.+- + .++|-|=....|.++ ..+++.+
T Consensus 55 llvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR-~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~ 133 (353)
T PRK12755 55 LLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMR-VYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLD 133 (353)
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEE-eccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHH
Confidence 3344444555678888888888876531 1 266777655445554 2211111
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch--HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
..++++|++.. +.++...+-+.+ -+++. .+| -++.....++|...++++.+-....+++..+..+-.|+
T Consensus 134 ~~e~Glp~atE--~ld~~~~~y~~D--lvs~~-----aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa 204 (353)
T PRK12755 134 LVELGLPLATE--ALDPISPQYLGD--LISWG-----AIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAA 204 (353)
T ss_pred HHHhCCCEEEE--ecCcccHHHHHh--hhhhe-----eeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHH
Confidence 13579999873 222223222221 13332 346 66778888999999999998887777777666555555
Q ss_pred hcC
Q 013681 378 GLG 380 (438)
Q Consensus 378 al~ 380 (438)
..+
T Consensus 205 ~~~ 207 (353)
T PRK12755 205 AQP 207 (353)
T ss_pred hCC
Confidence 543
No 439
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=24.45 E-value=2.6e+02 Score=27.21 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecC-C-------CchHHHHHHHHHHhhCCCcEEEEeCCC--CCCHHHHHHHHHHhhh-
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVG-R-------NITADFDVLQAIHAVHPHCSFILDANE--GYTSEEAVEVLGKLND- 272 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG-~-------d~~~di~~l~aiR~~~~~~~L~vDAN~--~~s~~~A~~~l~~L~~- 272 (438)
+|+|+.+.+.+..++|-..+-+.+- . |++.=.+.+++||+..||+-+-+=..+ ..++++=++.+..+.+
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~pd 103 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWKPD 103 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--S
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999999999886 2 455556778999999899877766444 4566665556655421
Q ss_pred ---CCCCCceEe--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH---HHHHHcCC---ccEEEecCCcc-h-
Q 013681 273 ---MGVIPVLFE--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV---QKVMQENL---ASVVNIKLAKF-G- 339 (438)
Q Consensus 273 ---~~l~~~~iE--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~---~~ll~~~a---~d~i~lk~~~~-G- 339 (438)
++....-+- +-+.....+.+.++.+.+++ .++..-. ++++..++ ..+++.+- +-.+++=...- |
T Consensus 104 ~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e-~Gi~pe~--ev~d~~~l~~~~~l~~~G~l~~p~~~~~vlG~~~g~ 180 (272)
T PF05853_consen 104 MASLNPGSMNFGTRDRVYINTPADARELARRMRE-RGIKPEI--EVFDPGHLRNARRLIEKGLLPGPLLVNFVLGVPGGM 180 (272)
T ss_dssp EEEEE-S-EEESGGCSEE---HHHHHHHHHHHHH-TT-EEEE--EESSHHHHHHHHHHHHTTSS-SSEEEEEEES-TTS-
T ss_pred eEEecccccccccCCceecCCHHHHHHHHHHHHH-cCCeEEE--EEEcHHHHHHHHHHHHCCCCCCCeEEEEcccCCCCC
Confidence 121110111 22223334555555554443 4554433 45676654 56666654 33444433332 2
Q ss_pred ---HHHHHHHHHHHHHcCCeEEEccC
Q 013681 340 ---VLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 340 ---i~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
......+++.... +..|.+++.
T Consensus 181 ~~~~~~l~~~l~~l~~-~~~w~v~~~ 205 (272)
T PF05853_consen 181 PATPENLLAMLDMLPE-GAPWSVCGI 205 (272)
T ss_dssp -S-HHHHHHHHHHHHH-TEEEEEEE-
T ss_pred CCCHHHHHHHHHhcCC-CCcEEEEcc
Confidence 2334555555555 788877764
No 440
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.40 E-value=3.3e+02 Score=26.29 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
+++..+.||+.+-+-|.. .+|...+|.+-+ .++++-+-.=-+.+.+.++|.++++..+
T Consensus 155 v~kAie~Gyk~IaVTV~~--~~~A~~iRele~~~~~~~~if~VHtTGis~eeA~~l~~~~D 213 (258)
T PF09872_consen 155 VKKAIEMGYKRIAVTVAD--AEDAKKIRELEKEEGVNIYIFGVHTTGISEEEAERLFEYAD 213 (258)
T ss_pred HHHHHHcCCceEEEEecC--HHHHHHHHHhhccCCCceEEEEEEccCCCHHHHHHHHHHhH
Confidence 466679999999988864 356666666655 4667666666678889999987766543
No 441
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=24.23 E-value=7.2e+02 Score=25.16 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEEcC
Q 013681 234 DFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVADE 311 (438)
Q Consensus 234 di~~l~aiR~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~dE 311 (438)
+-+.++++-++| +++++-.+--+.-..+..++.++-..+++.. .=+|=|.-++..+...++++.+. ..+ -=+-..|
T Consensus 123 ~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~d-vG~EiPaipg~e~~i~e~~~~~~-~~~~~FlNiNE 200 (353)
T COG2108 123 TEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMD-VGVEIPAIPGEEEAILEFAKALD-ENGLDFLNINE 200 (353)
T ss_pred CHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCcc-ceeecCCCcchHHHHHHHHHHHH-hcccceeeeee
Confidence 445666666665 5555555511222334445555544466654 35899988876655556655432 233 2234455
Q ss_pred CCCCHHHHHHHHHcCCccEEEecCCcc-h-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 312 SCRSLNDVQKVMQENLASVVNIKLAKF-G-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk~~~~-G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
--.+-....++.+.+ +...--..+-+ | ...++++.+.|++. ..+.+|-
T Consensus 201 LE~sE~N~~~l~~~g-y~~~~~~~~av~GS~E~~Lk~l~~~~~~-~~l~vH~ 250 (353)
T COG2108 201 LEFSENNYENLLERG-YKISDDGSSAVAGSLEAALKVLKWAEEN-WDLTVHY 250 (353)
T ss_pred eeeccchHHHHHhcC-ceeccCCcccccchHHHHHHHHHHHhcc-cCceEEE
Confidence 555555667777653 43333333333 8 88899999999886 5555553
No 442
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.12 E-value=5.1e+02 Score=25.92 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHhhC-CCcEEEEeC-CCCCCHHHHHHHHHHhhhCCCCCceE-ecCC---------CCCChhhHHHHHH
Q 013681 230 NITADFDVLQAIHAVH-PHCSFILDA-NEGYTSEEAVEVLGKLNDMGVIPVLF-EQPV---------HRDDWSGLHDVSN 297 (438)
Q Consensus 230 d~~~di~~l~aiR~~~-~~~~L~vDA-N~~~s~~~A~~~l~~L~~~~l~~~~i-EqPl---------~~~d~~~~a~L~~ 297 (438)
+.++-++.++.+.+.| ..+-|. +. +-.+..+...++++.+++...++.|. .-|. -.-+.+.+++|.+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~-gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQ-GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-eCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555566666666655 334444 33 33456777788888887653221121 1111 1112455666654
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
+ .-..++....|.+ + .+..+. +.+.++.....++.++.|++.|+++..+.
T Consensus 150 A--Gl~~i~~~~~E~~-~----~~v~~~-------i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~ 199 (343)
T TIGR03551 150 A--GLDSMPGTAAEIL-D----DEVRKV-------ICPDKLSTAEWIEIIKTAHKLGIPTTATI 199 (343)
T ss_pred h--CcccccCcchhhc-C----HHHHHh-------cCCCCCCHHHHHHHHHHHHHcCCcccceE
Confidence 1 0111221111211 1 111111 12223345678999999999999985543
No 443
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.02 E-value=5.1e+02 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 340 VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
....++.++.|++.|+++..+-++
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEe
Confidence 567789999999999998766554
No 444
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.01 E-value=6.1e+02 Score=23.84 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=73.5
Q ss_pred eeCCCCHHHHHHHHHHHhhcCCcEEEEecC-----CCchHHHHHHHHHHhhCCCcEEEEeCCCC-CCHHHHHHHHHHhhh
Q 013681 199 TIPAVSPAEASELASKYCKLGFSTLKLNVG-----RNITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVEVLGKLND 272 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG-----~d~~~di~~l~aiR~~~~~~~L~vDAN~~-~s~~~A~~~l~~L~~ 272 (438)
++...++..+.++++++.+.|...+-+.|- +++....+.++++|+.+|++.+ |+.=- -+++. +++.+.+
T Consensus 12 Si~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~~p~~---~i~~~~~ 86 (228)
T PTZ00170 12 SILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVSNPEK---WVDDFAK 86 (228)
T ss_pred hHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCCCHHH---HHHHHHH
Confidence 333457777888999998899999988883 2455677889999997765443 44322 23544 5566666
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEE---EecCCcch
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVV---NIKLAKFG 339 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i---~lk~~~~G 339 (438)
.+.. ++==...... ....+..+.+++ ...+-|++. ..+..++++.+++...+|+| ...|..-|
T Consensus 87 ~Gad--~itvH~ea~~-~~~~~~l~~ik~~G~~~gval~-p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~g 153 (228)
T PTZ00170 87 AGAS--QFTFHIEATE-DDPKAVARKIREAGMKVGVAIK-PKTPVEVLFPLIDTDLVDMVLVMTVEPGFGG 153 (228)
T ss_pred cCCC--EEEEeccCCc-hHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHccchhhhHHhhhcccCCCC
Confidence 6643 3311111111 101122111221 122334444 22467778777754556665 55666655
No 445
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.69 E-value=44 Score=27.16 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 232 ~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
+.++..|..+.+.+||..-.+=-+-..+.+++.+.++.|++.|+
T Consensus 7 ~l~~~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GL 50 (92)
T PF10007_consen 7 PLDLKILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGL 50 (92)
T ss_pred hhHHHHHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 35677888888888875544444557789999999999999996
No 446
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.60 E-value=4.9e+02 Score=26.73 Aligned_cols=136 Identities=11% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
.|.+.+.+..+++++ .|..+++--...-..+.+.++.+++.| ..+|+......+.|++.. ...-.| .+--
T Consensus 18 ~d~~~i~~~~~~l~~-~lp~~~~~YAvKaN~~~~il~~l~~~G----~g~DvaS~gEl~~al~~G--~~~~~I---if~g 87 (394)
T cd06831 18 GDLGKIVKKHSQWQT-VMAQIKPFYTVRCNSTPAVLEILAALG----TGFACSSKNEMALVQELG--VSPENI---IYTN 87 (394)
T ss_pred EEHHHHHHHHHHHHH-HCCCCeEEeeeccCCCHHHHHHHHHcC----CCeEeCCHHHHHHHHhcC--CCcCCE---EEeC
Confidence 367777776666633 333222211111234667888888766 235555554444433321 233333 5677
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC-CccE-EEecC----------Ccch--HHHHHHHHH
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN-LASV-VNIKL----------AKFG--VLGTLQIIK 348 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~-a~d~-i~lk~----------~~~G--i~~~~~~~~ 348 (438)
|.+.. ++++... +.++.+..= -+..+++++.+.. .+.+ +.+.+ +|.| +..+.++.+
T Consensus 88 p~K~~--~~l~~a~-----~~Gv~~i~v---DS~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~ 157 (394)
T cd06831 88 PCKQA--SQIKYAA-----KVGVNIMTC---DNEIELKKIARNHPNAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHLLE 157 (394)
T ss_pred CCCCH--HHHHHHH-----HCCCCEEEE---CCHHHHHHHHHhCCCCcEEEEEeccCCCCCCccCCCCCCCHHHHHHHHH
Confidence 77643 3333322 356753322 2444444443221 1222 23333 5789 677889999
Q ss_pred HHHHcCCeEE
Q 013681 349 ATRKSGLHLM 358 (438)
Q Consensus 349 ~A~~~gi~~~ 358 (438)
.+++.|+.+.
T Consensus 158 ~~~~~~l~~~ 167 (394)
T cd06831 158 CAKELDVQIV 167 (394)
T ss_pred HHHHCCCeEE
Confidence 9999887753
No 447
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.59 E-value=7e+02 Score=25.09 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHH-HHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFD-VLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~-~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
.+++++...++...+.|.+-||+--|- -+++|+. .++.+.+. .-.+|.+=.||..-+. +++.|++.++. -|
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~----~a~~Lk~AGl~--rV 115 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLAR----RAADLKEAGLD--RV 115 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhc-ccceEEEecchhhHHH----HHHHHHHcCCc--EE
Confidence 378998888888888888888888774 3556654 34555554 4457888899977654 45556665553 34
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC----CccEEEecCCcchHHHHHHHHHHHHHcCCe
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN----LASVVNIKLAKFGVLGTLQIIKATRKSGLH 356 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~----a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~ 356 (438)
=--+..-|.+-+++++. .+. .++-+. .+..+.+.+ .++.+.+|- +-..+...+++.|+..|+.
T Consensus 116 NVSLDsld~e~f~~IT~-----~~~---~~~Vl~---GI~~A~~~Gl~pVKlN~Vv~kg--vNd~ei~~l~e~~~~~~~~ 182 (322)
T COG2896 116 NVSLDSLDPEKFRKITG-----RDR---LDRVLE---GIDAAVEAGLTPVKLNTVLMKG--VNDDEIEDLLEFAKERGAQ 182 (322)
T ss_pred EeecccCCHHHHHHHhC-----CCc---HHHHHH---HHHHHHHcCCCceEEEEEEecC--CCHHHHHHHHHHHhhcCCc
Confidence 43455556677777752 111 222222 234444443 234444442 1156677888889998876
Q ss_pred E
Q 013681 357 L 357 (438)
Q Consensus 357 ~ 357 (438)
+
T Consensus 183 l 183 (322)
T COG2896 183 L 183 (322)
T ss_pred e
Confidence 4
No 448
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.55 E-value=9.3e+02 Score=25.79 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCC-chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE----
Q 013681 206 AEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF---- 280 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i---- 280 (438)
++..+.++.+.+.|...+-+-.-.. -+.-++.++.+|+.+|+ .+-|=|..-.++++|.+.++. +....++
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~a----GAd~I~vg~g~ 315 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAEA----GADFVKVGIGG 315 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHHc----CCCEEEECCCC
Confidence 4566788889999999998874432 23346778888887763 144445556788887777653 2210112
Q ss_pred -------ecC-CCCCChhhHHHHHHhhcc---ccC--CeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 281 -------EQP-VHRDDWSGLHDVSNFARD---TYG--ISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 281 -------EqP-l~~~d~~~~a~L~~~~r~---~~~--iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
++. +...++....+.++.+++ ..+ +||..|--+.+..|+..+|..+ +|.+.+-
T Consensus 316 Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~G-A~~vm~G 381 (502)
T PRK07107 316 GSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMG-ADFIMLG 381 (502)
T ss_pred CcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcC-CCeeeeC
Confidence 121 233356666666654321 124 9999999999999998888875 6666654
No 449
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.50 E-value=6.7e+02 Score=24.11 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=30.8
Q ss_pred cCCeEEEcCCCCCH------HHH-HHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEE
Q 013681 303 YGISVVADESCRSL------NDV-QKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 303 ~~iPIa~dEsl~~~------~d~-~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
+.+|+. --.-.++ +.+ +++.+.+.-.++.+|.. +.+..++++.|+++|+...+
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp---~ee~~~~~~~~~~~gl~~i~ 145 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP---LEESGDLVEAAKKHGVKPIF 145 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC---hHHHHHHHHHHHHCCCcEEE
Confidence 567754 2233333 444 44545543334555643 46677888889999988653
No 450
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.47 E-value=3.5e+02 Score=25.64 Aligned_cols=64 Identities=3% Similarity=0.010 Sum_probs=42.9
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEE
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~ 358 (438)
+++-++++++ .+.+||..|=-+.+.+++++++..+ ++.+++.... +.....+.++++++|=++.
T Consensus 64 n~~~I~~i~~----~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a--~~~~~~l~~~~~~fg~~iv 127 (234)
T PRK13587 64 EFDYIKSLRR----LTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKG--IQDTDWLKEMAHTFPGRIY 127 (234)
T ss_pred hHHHHHHHHh----hcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchH--hcCHHHHHHHHHHcCCCEE
Confidence 4566677764 5779999999999999999999875 5555554322 3333445556667654443
No 451
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.47 E-value=5e+02 Score=29.12 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHHHHhhhCCCC--CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHH
Q 013681 265 EVLGKLNDMGVI--PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLG 342 (438)
Q Consensus 265 ~~l~~L~~~~l~--~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~ 342 (438)
+.++..++.+.. +..-|+..-.+.++.+..+++ .+.+||---+-+++..++.+.-..+ .|.|.+=...++-..
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFIid~~QI~ea~~~G-ADavLLI~~~L~~~~ 148 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRA----AVHIPVLRKDFIVTDYQIWEARAHG-ADLVLLIVAALDDAQ 148 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCEeehhHhhcCHHH
Confidence 344444444321 234577777788888888875 6899999999999999987776654 788887766666557
Q ss_pred HHHHHHHHHHcCCeEEEcc
Q 013681 343 TLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s 361 (438)
..+++++|+..|+.+.+-.
T Consensus 149 l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVET 167 (695)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 8999999999999987543
No 452
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=23.42 E-value=4.4e+02 Score=25.43 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEE-EeCC------------------CCCCHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFI-LDAN------------------EGYTSEEAV 264 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~-vDAN------------------~~~s~~~A~ 264 (438)
+++++.+..+++.++|...+=+-+...+..-.+..+..++.+++.+++ +|.. .+.+.+|..
T Consensus 63 s~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~ 142 (275)
T TIGR00762 63 SPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEIL 142 (275)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 678887777888888888888888876666666666666666654454 6764 234566666
Q ss_pred HHHHHhhh
Q 013681 265 EVLGKLND 272 (438)
Q Consensus 265 ~~l~~L~~ 272 (438)
++++.+.+
T Consensus 143 ~~l~~~~~ 150 (275)
T TIGR00762 143 AKLEELRE 150 (275)
T ss_pred HHHHHHHh
Confidence 66665554
No 453
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=23.17 E-value=3.8e+02 Score=25.71 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=72.7
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCch---HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNIT---ADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~---~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
|++..+...+.++|.++++++.+.| ..+=+||-...+ .-++.++.+.+.| +++-+-.-||+.||+..++++.
T Consensus 60 ~vs~EV~~~d~~~m~~eA~~l~~~~-~nv~VKIP~T~~~G~~~l~ai~~L~~~G----I~vn~T~vfs~~Qa~~aa~A~~ 134 (236)
T TIGR02134 60 PISFEVFADDLDEMEKEARYIASWG-NNVNVKIPVTNTKGESTGPLIQKLSADG----ITLNVTALTTIEQVEKVCQSFT 134 (236)
T ss_pred cEEEEEecCCHHHHHHHHHHHHhcC-CCeEEEECCcCcccchHHHHHHHHHHCC----CcEEeehcCCHHHHHHHHHHHh
Confidence 4455555678999999999988877 446677754221 2255555555543 4444455789999887666543
Q ss_pred hC--CC-CC--ceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 272 DM--GV-IP--VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 272 ~~--~l-~~--~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
.- ++ .+ -.+++= -.|-...++++++.++...+.-|.+ =|+.++.++.++...| +|++-+-+.
T Consensus 135 aG~a~yispfvgR~dd~-g~D~~~~i~~i~~i~~~~~~tkILa-AS~R~~~~v~~a~~~G-ad~vTvp~~ 201 (236)
T TIGR02134 135 DGVPGIVSVFAGRIADT-GVDPEPHMREALEIVAQKPGVELLW-ASPRELFNIIQADRIG-CDIITCAHD 201 (236)
T ss_pred CCCCeEEEEecchhhhc-CCCcHHHHHHHHHHHHhCCCcEEEE-EccCCHHHHHHHHHcC-CCEEECCHH
Confidence 31 10 00 011110 0111223333333222233444432 2778888887777664 666665543
No 454
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.01 E-value=8.1e+02 Score=24.95 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecC-----C----C-chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVG-----R----N-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG-----~----d-~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
+.+.+.+.+.|+.+.+.|...++--.- + . ..+.+..++.+.+. -++.+..+.....+.+.+.++.+.
T Consensus 128 iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~-~Gl~~~t~v~d~~~~~~l~~~vd~-- 204 (360)
T PRK12595 128 VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE-YGLAVISEIVNPADVEVALDYVDV-- 204 (360)
T ss_pred ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH-cCCCEEEeeCCHHHHHHHHHhCCe--
Confidence 346777888899998899877762210 0 1 12344444444331 245566666555444443333111
Q ss_pred hCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCC-CCHHHHHHH----HHcCCccEEEecCCcc-----h--
Q 013681 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLNDVQKV----MQENLASVVNIKLAKF-----G-- 339 (438)
Q Consensus 272 ~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl-~~~~d~~~l----l~~~a~d~i~lk~~~~-----G-- 339 (438)
.+|=--. -.|++-+.+++ +++.||.+---. .+++++... ...+..+++.+.-+.. |
T Consensus 205 ------lkI~s~~-~~n~~LL~~~a-----~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~ 272 (360)
T PRK12595 205 ------IQIGARN-MQNFELLKAAG-----RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRN 272 (360)
T ss_pred ------EEECccc-ccCHHHHHHHH-----ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCC
Confidence 1221111 12445555554 578898887665 578877433 3445567777762211 2
Q ss_pred HHHHHHHHHHHHHcCCeEEEcc
Q 013681 340 VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s 361 (438)
-.....+..+-+.+++++.+.+
T Consensus 273 ~ldl~~i~~lk~~~~~PV~~d~ 294 (360)
T PRK12595 273 TLDISAVPILKQETHLPVMVDV 294 (360)
T ss_pred CcCHHHHHHHHHHhCCCEEEeC
Confidence 1244555566666899988833
No 455
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=22.92 E-value=4.3e+02 Score=28.04 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=52.6
Q ss_pred HHHHHHH-HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCC---CCCHHHHHHHHHcCCcc-EEEecC
Q 013681 261 EEAVEVL-GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES---CRSLNDVQKVMQENLAS-VVNIKL 335 (438)
Q Consensus 261 ~~A~~~l-~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEs---l~~~~d~~~ll~~~a~d-~i~lk~ 335 (438)
.+++..+ ..+-+-+-. ..+++|..+. +....++.. ...+++-.|++ ..+++++++.+..+ .. ++..-|
T Consensus 218 ~eal~~~~~~l~~~Gd~-Vli~~P~y~~-y~~~~~~~g----~~~v~~~~~~~~~~~~d~~~l~~~~~~~-~k~i~i~nP 290 (517)
T PRK13355 218 SELINLSMSALLDDGDE-VLIPSPDYPL-WTACVNLAG----GTAVHYRCDEQSEWYPDIDDIRSKITSR-TKAIVIINP 290 (517)
T ss_pred HHHHHHHHHHhCCCCCE-EEEcCCCCcC-HHHHHHHCC----CEEEEeecCcccCCCCCHHHHHHhcCcC-ceEEEEECC
Confidence 5555433 344332322 3789998653 333333321 23355556653 35677777776543 34 345566
Q ss_pred Ccc-h-HH---HHHHHHHHHHHcCCeEEEc
Q 013681 336 AKF-G-VL---GTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 336 ~~~-G-i~---~~~~~~~~A~~~gi~~~~~ 360 (438)
+.- | +. ...+++++|+++++-+..-
T Consensus 291 ~NPTG~v~~~~~l~~i~~~a~~~~~~ii~D 320 (517)
T PRK13355 291 NNPTGALYPREVLQQIVDIAREHQLIIFSD 320 (517)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 654 7 33 3788899999999876543
No 456
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.84 E-value=8.1e+02 Score=24.84 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP 283 (438)
+.++..+.++.+.+.|+..|-+-.-...++|.+.++.+.+..+..++..=+. ...++ ++++.+.++....+--|
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r--~~~~d----i~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLAR--ALKKD----IDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcc--cCHHH----HHHHHHcCcCEEEEEEc
Confidence 6777788888898999999886432344678888888888766555543221 22222 33333444431123334
Q ss_pred CCCC------------ChhhHHHHHHhhccccCCeEEEc-C--CCCCHHHH----HHHHHcCCccEEEecCCcch---HH
Q 013681 284 VHRD------------DWSGLHDVSNFARDTYGISVVAD-E--SCRSLNDV----QKVMQENLASVVNIKLAKFG---VL 341 (438)
Q Consensus 284 l~~~------------d~~~~a~L~~~~r~~~~iPIa~d-E--sl~~~~d~----~~ll~~~a~d~i~lk~~~~G---i~ 341 (438)
+..- .++.+.+..+.++ +.+..+... | +-.++..+ +.+.+.+ ++.|.+.=+. | ..
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g-~~~i~l~DT~-G~~~P~ 170 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAK-EHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG-ADRINIADTV-GVLTPQ 170 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC-CCEEEEeCCC-CccCHH
Confidence 4211 1222223222222 234444333 2 33344444 3344443 5666665444 5 34
Q ss_pred HHHHHHHHHHH-cCCeEEEccCCchhHHHH
Q 013681 342 GTLQIIKATRK-SGLHLMIDGMIETRLATG 370 (438)
Q Consensus 342 ~~~~~~~~A~~-~gi~~~~~s~~es~ig~~ 370 (438)
...+++....+ .++++.+|+-...+++++
T Consensus 171 ~v~~li~~l~~~~~~~l~~H~Hnd~GlA~A 200 (363)
T TIGR02090 171 KMEELIKKLKENVKLPISVHCHNDFGLATA 200 (363)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCChHHH
Confidence 45555555543 467787877655555543
No 457
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=22.81 E-value=6.9e+02 Score=24.06 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=72.7
Q ss_pred eeeCCCCHHHHHHHHHHHhhc-CCcEEEEecCCC----chHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 198 ITIPAVSPAEASELASKYCKL-GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~d----~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
.+.+..+.+|....++-.++. |-..||+.|=.| +-+-++.+++-+.+ -+++.+.- |..++ .-.+++|+
T Consensus 68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~akrL~ 141 (247)
T PF05690_consen 68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-----YCTDD-PVLAKRLE 141 (247)
T ss_dssp E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-----EE-S--HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-----cCCCC-HHHHHHHH
Confidence 344566888876666666664 679999998543 24567777777773 34444332 11122 45677888
Q ss_pred hCCCC-CceEecCCCCC----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 272 DMGVI-PVLFEQPVHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 272 ~~~l~-~~~iEqPl~~~----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+.|-. +.=+=-||-.+ +...++.+++ +.++||..|--+-++.|....++.+ +|.+-+.
T Consensus 142 d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvN 204 (247)
T PF05690_consen 142 DAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLVN 204 (247)
T ss_dssp HTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGSSSBEEES---SHHHHHHHHHTT--SEEEES
T ss_pred HCCCCEEEecccccccCcCCCCHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHcC-Cceeehh
Confidence 77743 11234566443 4556666664 6799999999999999999999986 7777764
No 458
>PLN02979 glycolate oxidase
Probab=22.71 E-value=8.4e+02 Score=25.01 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=50.1
Q ss_pred CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc----h-HHHHHHHHHHHHHc--CCeEEE
Q 013681 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF----G-VLGTLQIIKATRKS--GLHLMI 359 (438)
Q Consensus 287 ~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~----G-i~~~~~~~~~A~~~--gi~~~~ 359 (438)
-.|+.++.|++ .+++||..-|- .+.+|.+++.+.+ +|+|++.-.-- + .....-+.+++++. .++++.
T Consensus 210 ltW~dl~wlr~----~~~~PvivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 210 LSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred CCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 36888888875 79999999987 4789999998875 88877654321 1 12222333344443 488888
Q ss_pred ccCCchhH
Q 013681 360 DGMIETRL 367 (438)
Q Consensus 360 ~s~~es~i 367 (438)
.+-+.++.
T Consensus 284 dGGIr~G~ 291 (366)
T PLN02979 284 DGGVRRGT 291 (366)
T ss_pred eCCcCcHH
Confidence 87665544
No 459
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.68 E-value=1.1e+02 Score=30.97 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=35.1
Q ss_pred hCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 272 ~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
+.|.| .++|.|+..++.+.+.++++ +.++.++...-......++++++.+
T Consensus 88 ~aGkH-VL~EKPla~~Ea~el~~~A~----~~g~~l~v~~f~p~~~~vr~~i~~~ 137 (343)
T TIGR01761 88 ARGIH-VLQEHPLHPRDIQDLLRLAE----RQGRRYLVNTFYPHLPAVRRFIEYA 137 (343)
T ss_pred hCCCe-EEEcCCCCHHHHHHHHHHHH----HcCCEEEEEecCHHHHHHHHHHHcc
Confidence 45677 59999998655566666664 4688888876555555678888765
No 460
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=22.49 E-value=1.4e+02 Score=30.88 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHcCCccEEEecCCc-ch--HH--HHHHHHHHHHHcCCeEEE
Q 013681 312 SCRSLNDVQKVMQENLASVVNIKLAK-FG--VL--GTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk~~~-~G--i~--~~~~~~~~A~~~gi~~~~ 359 (438)
.-+++..++.+++.+.+-++++.|+. || ++ ..+++++.|+++|+.+.-
T Consensus 185 weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 185 WEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred ceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 44577788999999999999999987 58 55 489999999999999853
No 461
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=22.43 E-value=6.7e+02 Score=23.75 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=52.8
Q ss_pred eeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC--------CC--------------chHHHHHHHHHHhhC--CCcEEEE
Q 013681 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG--------RN--------------ITADFDVLQAIHAVH--PHCSFIL 252 (438)
Q Consensus 197 ~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG--------~d--------------~~~di~~l~aiR~~~--~~~~L~v 252 (438)
|.+.+.-+.+...+.++.+.+.|-..+-+-+- +- ++.-.+.++.+|+.. | +-||+
T Consensus 5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~ 83 (242)
T cd04724 5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMG 83 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEE
Confidence 45555556677777777777778888777742 10 124456677777632 3 45655
Q ss_pred eCCCC------------------------CCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 253 DANEG------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 253 DAN~~------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
-.|-- ..+++..++++.++++++...++=-|..
T Consensus 84 y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 84 YYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred ecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 65521 1346666777788887765344455554
No 462
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.06 E-value=1.4e+02 Score=28.54 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=28.2
Q ss_pred CccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEc
Q 013681 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 327 a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
..|+..+++.. | ..+.+++++.|+++||++++-
T Consensus 38 ~~d~~~vd~~~-Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 38 PSDYYAVDPRF-GTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp ESEEEEESTTT-BHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ceeeecccccc-chhhhhhhhhhccccccceEEEe
Confidence 35678888855 8 999999999999999999864
No 463
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=4.4e+02 Score=27.51 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=49.5
Q ss_pred ceeeeeeeCCCCHHHHH-HHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh----hCCC-cEEEEeCCCCCCH-HHHHH
Q 013681 193 SLSTAITIPAVSPAEAS-ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHPH-CSFILDANEGYTS-EEAVE 265 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~-~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~----~~~~-~~L~vDAN~~~s~-~~A~~ 265 (438)
++|+|.+..-.+|..++ +-+++..+++|..|=+.-..--..|..+.+.+++ ..|+ +-+.+||+-+-.. ++|..
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 35666654444676664 4478888999999998876544556565555554 3465 6677999987663 44544
Q ss_pred HHHH
Q 013681 266 VLGK 269 (438)
Q Consensus 266 ~l~~ 269 (438)
|=+.
T Consensus 236 Fk~~ 239 (483)
T KOG0780|consen 236 FKET 239 (483)
T ss_pred HHHh
Confidence 4443
No 464
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.84 E-value=2.8e+02 Score=26.68 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC---chHHHHHH-HHHHhhCCCcEEEEeCCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN---ITADFDVL-QAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d---~~~di~~l-~aiR~~~~~~~L~vDAN~~ 257 (438)
.+++...++++++++.|-..+-+-.++. .++++.++ ..+++.. ++.|.||....
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~-~~piSIDT~~~ 80 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP-TVPLMLDSTNW 80 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCcEEeeCCcH
Confidence 5788889999999999999998877652 22333332 3344433 78899998643
No 465
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=21.60 E-value=40 Score=33.66 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=31.9
Q ss_pred hhhhcccccceeecccccccccccccCCcceeeEEE
Q 013681 34 FCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQR 69 (438)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~~~I~~ 69 (438)
.|+.++.++.+.|++|=.||+|.++.++++.++++.
T Consensus 2 ~~~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~ 37 (320)
T PRK02714 2 NYRFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTD 37 (320)
T ss_pred ceEEEEEEEEEecCCceEeccceEEEeEEEEEEEEe
Confidence 357788999999999999999999999999888873
No 466
>PRK07094 biotin synthase; Provisional
Probab=21.55 E-value=7.8e+02 Score=24.16 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc----hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC--
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP-- 277 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~----~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~-- 277 (438)
+++++.+.++.+.+.|++.|-+--|.+. +.=.+.++.|++. +++.+.+.. +..+.+ .++.|++.++..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~-g~~~~e----~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSL-GERSYE----EYKAWKEAGADRYL 144 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEec-CCCCHH----HHHHHHHcCCCEEE
Confidence 7888888888888899999988756332 2334456677665 566655543 223333 333444444320
Q ss_pred ceEecC-------C-CCCChhhHHHHHHhhccccCCeEEE-------cCCCCCHHHHHHHHHcCCccEEEecC-----C-
Q 013681 278 VLFEQP-------V-HRDDWSGLHDVSNFARDTYGISVVA-------DESCRSLNDVQKVMQENLASVVNIKL-----A- 336 (438)
Q Consensus 278 ~~iEqP-------l-~~~d~~~~a~L~~~~r~~~~iPIa~-------dEsl~~~~d~~~ll~~~a~d~i~lk~-----~- 336 (438)
.-+|-. + +...++.+.+..+.++ +.++++.. +|+..+..+..+++....++.+.+-+ .
T Consensus 145 ~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~-~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgT 223 (323)
T PRK07094 145 LRHETADKELYAKLHPGMSFENRIACLKDLK-ELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDT 223 (323)
T ss_pred eccccCCHHHHHHhCCCCCHHHHHHHHHHHH-HcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCC
Confidence 012321 1 1223333332222222 24555432 56655555555555555565543321 1
Q ss_pred -----cch-HHHHHHHHHHHHHc
Q 013681 337 -----KFG-VLGTLQIIKATRKS 353 (438)
Q Consensus 337 -----~~G-i~~~~~~~~~A~~~ 353 (438)
..+ +...++++++++..
T Consensus 224 pl~~~~~~~~~~~~~~~a~~R~~ 246 (323)
T PRK07094 224 PLKDEKGGSLELTLKVLALLRLL 246 (323)
T ss_pred CcccCCCCCHHHHHHHHHHHHHh
Confidence 113 56678888888764
No 467
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.52 E-value=6.4e+02 Score=23.65 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHH-HHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC---CCCc
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADF-DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMG---VIPV 278 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di-~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~---l~~~ 278 (438)
.+|+.. ++.+.+.|-..+-+.+-.. .+. +.++.||+.|-..-|.+..+. ..+....+++.++..= +.+-
T Consensus 68 ~~p~~~---i~~~~~~gad~i~~H~Ea~--~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlvMtV~PG 140 (220)
T PRK08883 68 KPVDRI---IPDFAKAGASMITFHVEAS--EHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILLMSVNPG 140 (220)
T ss_pred CCHHHH---HHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEEEEecCC
Confidence 466654 4567788999988887641 233 567888887766556655553 4455455666554311 0011
Q ss_pred eEecCCCCCChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 279 LFEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 279 ~iEqPl~~~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+=-|++-+..++.++++++...+ ...+||..|=.+. .+.+..+.+.+ +|++.+=-
T Consensus 141 fgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG-Ad~vVvGS 196 (220)
T PRK08883 141 FGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG-ADMFVAGS 196 (220)
T ss_pred CCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC-CCEEEEeH
Confidence 12344433344555666543211 2358898877654 78888888775 66666543
No 468
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.42 E-value=2.9e+02 Score=24.77 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 318 DVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 318 d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
.+.++++.+ ++.+|+...... ...+.++.++|++++.++++++..
T Consensus 17 ~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~ 65 (180)
T PF02581_consen 17 QLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV 65 (180)
T ss_dssp HHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H
T ss_pred HHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH
Confidence 357778776 999999775542 456889999999999999999853
No 469
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.42 E-value=9.2e+02 Score=24.95 Aligned_cols=124 Identities=8% Similarity=0.140 Sum_probs=69.6
Q ss_pred hcCCcEEEEec-CCCch-------HHHHHHHHHHhhCCCcEEEEe--CCCCCCHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 217 KLGFSTLKLNV-GRNIT-------ADFDVLQAIHAVHPHCSFILD--ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 217 ~~Gf~~iKlKv-G~d~~-------~di~~l~aiR~~~~~~~L~vD--AN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
..|...+-++. +.|++ +-.+.++.|.+ .-++.|+|| .|-..+++-..+-++.+...+.- | -....
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~-av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpL---L-~SAt~ 225 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQ-AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCL---L-ASANL 225 (389)
T ss_pred HhCCCEEEEEecCCCccccccCHHHHHHHHHHHHH-hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcE---E-EecCc
Confidence 45666666665 23333 34444555533 346789999 56777887777777777764321 1 12223
Q ss_pred C-ChhhHHHHHHhhccccCCeEEEc--CCCCCHHHHHHHHHcCCcc--EEEecCCcc----hHHHHHHHHHH
Q 013681 287 D-DWSGLHDVSNFARDTYGISVVAD--ESCRSLNDVQKVMQENLAS--VVNIKLAKF----GVLGTLQIIKA 349 (438)
Q Consensus 287 ~-d~~~~a~L~~~~r~~~~iPIa~d--Esl~~~~d~~~ll~~~a~d--~i~lk~~~~----Gi~~~~~~~~~ 349 (438)
+ +|+.+.+++. +.+.|+..- -++....++.+.+....+. =|++||.-. |+..+...+..
T Consensus 226 e~Ny~~ia~lAk----~yg~~Vvv~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~er 293 (389)
T TIGR00381 226 DLDYEKIANAAK----KYGHVVLSWTIMDINMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMER 293 (389)
T ss_pred hhhHHHHHHHHH----HhCCeEEEEcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHH
Confidence 3 7888988886 577776542 2233333444444433333 588999772 45544443333
No 470
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.35 E-value=3e+02 Score=27.44 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc----hHHHHHHHHHHhhCCCcEE
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI----TADFDVLQAIHAVHPHCSF 250 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~----~~di~~l~aiR~~~~~~~L 250 (438)
.+++++.+.++++.+.|++.|-+--|.++ +.=.+.++.|++.++++.+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 58899998888888899999888444332 2224567888877776543
No 471
>PLN02858 fructose-bisphosphate aldolase
Probab=21.18 E-value=7.4e+02 Score=30.25 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=81.3
Q ss_pred ceeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh----CC--CcEEE-E---------eC
Q 013681 193 SLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DA 254 (438)
Q Consensus 193 ~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~----~~--~~~L~-v---------DA 254 (438)
++|+...+... +.+. +.+.++.||+.+=+.-.. ++++++++.+.+.+. +- +.+|- | +.
T Consensus 1169 ~vpV~lHLDHg~~~~~----i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~ 1244 (1378)
T PLN02858 1169 SVPITVHFDHGTSKHE----LLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEE 1244 (1378)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 46665555543 4444 344567899999998765 899999998888762 20 12221 1 11
Q ss_pred C-CCC-CHHHHHHHHHHhh--h----CC-CCCceEecCCCCCChhhHHHHHHhhcccc---CCeEEEc-CCCCCHHHHHH
Q 013681 255 N-EGY-TSEEAVEVLGKLN--D----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVAD-ESCRSLNDVQK 321 (438)
Q Consensus 255 N-~~~-s~~~A~~~l~~L~--~----~~-l~~~~iEqPl~~~d~~~~a~L~~~~r~~~---~iPIa~d-Esl~~~~d~~~ 321 (438)
+ ..| ++++|.+|+++-. - ++ .|=.|-.. -+.-|++-++++++ .+ ++|+.+- =|=...+++++
T Consensus 1245 ~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~-~p~l~~~~l~~i~~----~~~~~~vpLVlHGgSG~~~~~~~~ 1319 (1378)
T PLN02858 1245 YEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPAS-GPNLRLDLLKELRA----LSSKKGVLLVLHGASGLPESLIKE 1319 (1378)
T ss_pred cccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCC-CCccCHHHHHHHHH----HhcCCCCcEEEeCCCCCCHHHHHH
Confidence 1 125 4999999998632 1 11 22112221 13457888888876 45 7997665 47677778898
Q ss_pred HHHcCCccEEEecC
Q 013681 322 VMQENLASVVNIKL 335 (438)
Q Consensus 322 ll~~~a~d~i~lk~ 335 (438)
+++.+ +.=||+.-
T Consensus 1320 ai~~G-i~KiNi~T 1332 (1378)
T PLN02858 1320 CIENG-VRKFNVNT 1332 (1378)
T ss_pred HHHcC-CeEEEeCH
Confidence 88865 44466653
No 472
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.13 E-value=7.8e+02 Score=24.02 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred eeCCCCHHHHHHHHHHHhhc-------CCcEEEEecCCC----chHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHH
Q 013681 199 TIPAVSPAEASELASKYCKL-------GFSTLKLNVGRN----ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEV 266 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~-------Gf~~iKlKvG~d----~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~ 266 (438)
+.+..+.+|....++-.++. |-+.||+.|=.| .-+.++.+++-+.+ -+++.++- |..++ .-.
T Consensus 77 TaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~ 150 (267)
T CHL00162 77 TAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLP-----YINAD-PML 150 (267)
T ss_pred CcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEee-----cCCCC-HHH
Confidence 33455677765444433333 578999998543 34567777777773 34444432 22122 346
Q ss_pred HHHhhhCCCC-CceEecCCCCC----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 267 LGKLNDMGVI-PVLFEQPVHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 267 l~~L~~~~l~-~~~iEqPl~~~----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+++|++.+-. +-=+=-||-.+ +...++-+.+ +.++||..|--+.+..|+...++.+ +|.+-+-
T Consensus 151 a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e----~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~n 218 (267)
T CHL00162 151 AKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIE----NAKIPVIIDAGIGTPSEASQAMELG-ASGVLLN 218 (267)
T ss_pred HHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHH----cCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 6777776632 01123455432 4455555554 6789999999999999999999886 6666554
No 473
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.82 E-value=2.9e+02 Score=22.92 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHcCCccEEE-ecCCcch--HHHHHHHHHHHHHcCCeEEEcc
Q 013681 320 QKVMQENLASVVN-IKLAKFG--VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 320 ~~ll~~~a~d~i~-lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+.++.+..+.|. -+++++| ...+..+...++.+|+.++..+
T Consensus 58 l~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~~ 102 (137)
T cd00338 58 LADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHGVRVVTAD 102 (137)
T ss_pred HHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3344444566655 4889998 7789999999999999998765
No 474
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=20.81 E-value=2e+02 Score=31.65 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh---hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA---VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~---~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
|..|.+-+.+.+++. +.--..+-||... -...|-..|+++-+ .|.++...|.--.+|+.+.=+.|+++|++.|+|
T Consensus 350 PYeSF~~Vv~fl~qA-A~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvh 428 (696)
T COG0855 350 PYESFEPVVEFLRQA-AADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVH 428 (696)
T ss_pred chhhhHHHHHHHHHh-hcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcE
Confidence 344666666666665 4555666666542 12345556666655 478999999999999988889999999999887
Q ss_pred C
Q 013681 277 P 277 (438)
Q Consensus 277 ~ 277 (438)
.
T Consensus 429 V 429 (696)
T COG0855 429 V 429 (696)
T ss_pred E
Confidence 3
No 475
>PF05861 PhnI: Bacterial phosphonate metabolism protein (PhnI); InterPro: IPR008773 This family consists of several proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organised in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex [].; GO: 0015716 phosphonate transport
Probab=20.68 E-value=51 Score=33.26 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCC-cEEEEecCCCchHHHHHHHH
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGF-STLKLNVGRNITADFDVLQA 240 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf-~~iKlKvG~d~~~di~~l~a 240 (438)
+-+-||.|||.|..-+.. -+|+... .+..|++.+...+...-..|| .++|+-=-.+|+.++++++.
T Consensus 285 nErKAiaMAllDraLra~------e~~e~~~-------~PaqDeEFVL~H~D~vea~GFv~HlKLPHYVdFQseL~~~r~ 351 (358)
T PF05861_consen 285 NERKAIAMALLDRALRAR------ELGEDVA-------APAQDEEFVLSHIDNVEATGFVSHLKLPHYVDFQSELDLVRR 351 (358)
T ss_pred cHHHHHHHHHHHHHhhhh------hcCCCCC-------CCccCcceeeeccccchhhhHHHhccCCcccchHHHHHHHHH
Confidence 346689999999776542 2333210 122344444333334446788 67777655699999999999
Q ss_pred HHhh
Q 013681 241 IHAV 244 (438)
Q Consensus 241 iR~~ 244 (438)
+|+.
T Consensus 352 ~r~~ 355 (358)
T PF05861_consen 352 LRKE 355 (358)
T ss_pred HHHH
Confidence 9974
No 476
>PLN02334 ribulose-phosphate 3-epimerase
Probab=20.50 E-value=7e+02 Score=23.25 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHH--hhhC---CCCCceEecC
Q 013681 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGK--LNDM---GVIPVLFEQP 283 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~--L~~~---~l~~~~iEqP 283 (438)
+.++.+.+.|...+-+.+|. ..+-...+.+|+ ...+..+.+..|..-..+.+.++++. .+-. .+++-.=.|.
T Consensus 79 d~~~~~~~~gad~v~vH~~q--~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~ 156 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQ--ASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS 156 (229)
T ss_pred HHHHHHHHcCCCEEEEeecc--ccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccc
Q ss_pred CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 284 VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 284 l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
..+..++.++++++. ..++||..+=.+ +.+.+..+.+.+ +|++.+
T Consensus 157 ~~~~~~~~i~~~~~~---~~~~~I~a~GGI-~~e~i~~l~~aG-ad~vvv 201 (229)
T PLN02334 157 FIPSMMDKVRALRKK---YPELDIEVDGGV-GPSTIDKAAEAG-ANVIVA 201 (229)
T ss_pred cCHHHHHHHHHHHHh---CCCCcEEEeCCC-CHHHHHHHHHcC-CCEEEE
No 477
>PRK07360 FO synthase subunit 2; Reviewed
Probab=20.45 E-value=6.4e+02 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=20.7
Q ss_pred CCcchHHHHHHHHHHHHHcCCeEEEccC
Q 013681 335 LAKFGVLGTLQIIKATRKSGLHLMIDGM 362 (438)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s~ 362 (438)
|.++-....++.++.|++.|+++..+..
T Consensus 195 p~~~s~~~~l~~i~~a~~~Gl~~~sg~i 222 (371)
T PRK07360 195 PEKIKTAEWIEIVKTAHKLGLPTTSTMM 222 (371)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEE
Confidence 3344356779999999999999865544
No 478
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.38 E-value=9.3e+02 Score=24.60 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCCCCC---------ceEecCCCCCChhhH----------------HHHHHhh--ccccC
Q 013681 252 LDANEGYTSEEAVEVLGKLNDMGVIP---------VLFEQPVHRDDWSGL----------------HDVSNFA--RDTYG 304 (438)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~l~~---------~~iEqPl~~~d~~~~----------------a~L~~~~--r~~~~ 304 (438)
+=.-.--++++|++++++|++..-.. .++|-|=....|.++ ..+++.+ ..+.+
T Consensus 58 vGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~G 137 (356)
T PRK12822 58 IGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLG 137 (356)
T ss_pred EcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhC
Confidence 33344457888888888887643210 267888654334444 2222211 23689
Q ss_pred CeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch--HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 305 ISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG--VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 305 iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+|++.+= .-.+++-+.+++.. ..+| .++.....++|-..++++.+-....+++..+..+-.+++.+.
T Consensus 138 lPvatE~ld~~~~qy~~Dlisw----------~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH 207 (356)
T PRK12822 138 LATATEFLDTTSFPYIADLICW----------GAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPH 207 (356)
T ss_pred CCEEEeecccccHHHHHHHHHh----------hhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCC
Confidence 9999742 22333333333322 2346 556667778899999999988877777777766666665543
No 479
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.24 E-value=8e+02 Score=23.79 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec--CC-CchHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNV--GR-NITADFDVLQAIHAVHPHCSFILDANEGY 258 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKv--G~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~ 258 (438)
+++.+.+.++++.+.|...|.++= |. .+.+-.++++++++..|++.|.+=++.-+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 444455555555555555555542 22 33344444555555444444444444433
No 480
>COG2403 Predicted GTPase [General function prediction only]
Probab=20.24 E-value=2.4e+02 Score=29.07 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=50.4
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEccCC
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
..++||-.+++ ..++.++++...+|.++++.+-+--..-.+++...-+.|..+|.....
T Consensus 60 p~Gvpi~~~k~---~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~ 118 (449)
T COG2403 60 PLGVPILPEKD---YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPK 118 (449)
T ss_pred cCCcccccccc---HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCcc
Confidence 46899998887 778899999999999999999877777888999999999999876543
No 481
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.23 E-value=9.2e+02 Score=24.52 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHHhh--cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCC--CceE
Q 013681 209 SELASKYCK--LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVI--PVLF 280 (438)
Q Consensus 209 ~~~~~~~~~--~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~--~~~i 280 (438)
.+.++++++ .|...+-+.+.. .-+.-++.++.||+.+|+..|. |..--|++.|.+++++=.+ -++. +.-.
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI--aGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTIC--AGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE--EecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 455667777 489999998865 4566788899999999987654 3344467766665554221 1110 0011
Q ss_pred ecCC---CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 281 EQPV---HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 281 EqPl---~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
=+-. -..|+....+.++.++ ..++||.+|--+....|+-..|..+ .|.+++--..
T Consensus 188 Tr~vtGvG~PQltAV~~~a~~a~-~~gvpiIADGGi~~sGDI~KAlaaG-Ad~VMlGsll 245 (346)
T PRK05096 188 TRVKTGVGYPQLSAVIECADAAH-GLGGQIVSDGGCTVPGDVAKAFGGG-ADFVMLGGML 245 (346)
T ss_pred CccccccChhHHHHHHHHHHHHH-HcCCCEEecCCcccccHHHHHHHcC-CCEEEeChhh
Confidence 1111 1124444444444332 5789999999999999998888875 7777765433
No 482
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.23 E-value=9.2e+02 Score=24.52 Aligned_cols=130 Identities=17% Similarity=0.234 Sum_probs=77.6
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC--------CchHHHHHHHHHHhh----CC--CcEEEE------
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HP--HCSFIL------ 252 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l~aiR~~----~~--~~~L~v------ 252 (438)
+|+..-+... +.+. +.+.++.||+.+=+.... +++++++..+.+.+. +- +.+|-.
T Consensus 76 VPValHLDHg~~~e~----i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~ 151 (347)
T PRK09196 76 IPVVMHQDHGNSPAT----CQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLET 151 (347)
T ss_pred CcEEEECCCCCCHHH----HHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccc
Confidence 5554444433 4443 445678999999998662 688999988877662 21 233311
Q ss_pred ------eC---------CCCCC-HHHHHHHHHHhhh----------CCCCCceEe--cCC-CCCChhhHHHHHHhhcccc
Q 013681 253 ------DA---------NEGYT-SEEAVEVLGKLND----------MGVIPVLFE--QPV-HRDDWSGLHDVSNFARDTY 303 (438)
Q Consensus 253 ------DA---------N~~~s-~~~A~~~l~~L~~----------~~l~~~~iE--qPl-~~~d~~~~a~L~~~~r~~~ 303 (438)
|- ...|| |++|.+|.++..- ++. |-. .|- +.=|++-++++++ .+
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~---Yk~~~~p~~~~LdfdrL~eI~~----~v 224 (347)
T PRK09196 152 GMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGA---YKFTRKPTGDVLAIDRIKEIHA----RL 224 (347)
T ss_pred cccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCC---CCCCCCCChhhccHHHHHHHHh----cC
Confidence 11 12264 9999999987541 232 222 342 1236777887765 57
Q ss_pred -CCeEEEcC-CCC---------------------CHHHHHHHHHcCCccEEEecC
Q 013681 304 -GISVVADE-SCR---------------------SLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 304 -~iPIa~dE-sl~---------------------~~~d~~~ll~~~a~d~i~lk~ 335 (438)
++|+++-= |-. ..++++++++.+ +.=||+.-
T Consensus 225 ~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G-I~KINi~T 278 (347)
T PRK09196 225 PNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG-VRKVNIDT 278 (347)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC-CceEEeCh
Confidence 69987754 433 446677777765 44466654
No 483
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=20.17 E-value=6.8e+02 Score=22.98 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=9.1
Q ss_pred HHHHHHHHHcC--CeEEEccC
Q 013681 344 LQIIKATRKSG--LHLMIDGM 362 (438)
Q Consensus 344 ~~~~~~A~~~g--i~~~~~s~ 362 (438)
.++.+++++++ ..++.|+.
T Consensus 133 ~~~~~l~~~~~~~~~~i~H~~ 153 (251)
T cd01310 133 EDVLEILKEYGPPKRGVFHCF 153 (251)
T ss_pred HHHHHHHHhcCCCCCEEEEcc
Confidence 34455555553 44455543
No 484
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=20.13 E-value=2.6e+02 Score=27.96 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--------CchHHHHHHHHHHhhC--CCcEEEEeCCCCCCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAVH--PHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l~aiR~~~--~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
..+...+..+.+...||+ +..|. ....+.+|++-+.+++ +++++.+.+-|+|...+-+.++.
T Consensus 24 ~~~~~~~a~~~L~~~G~~---v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 24 ATDALKRAIQRLENLGFE---VVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred hHHHHHHHHHHHHHcCCE---EEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcc
Confidence 355556667778889954 44442 1245788999999975 78999999999999888777765
No 485
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.05 E-value=1.1e+03 Score=25.34 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeC--C-CCCC--HHHHHHHHHHhhhCCCC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDA--N-EGYT--SEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDA--N-~~~s--~~~A~~~l~~L~~~~l~ 276 (438)
.+.++..+.++.+.+.||..|-+-....-..|.+.++++++.. .+.++..-+ . .... .+..++. +.+.+..
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~---~~~~g~~ 100 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA---LLDAGTP 100 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH---HHhCCCC
Confidence 3678888889999999999998855333355778888888743 344443322 1 1121 1223333 3333321
Q ss_pred CceEecCCC---------C---CChhhHHHHHHhhccccCCeEEE------cCCCCCHHHH----HHHHHcCCccEEEec
Q 013681 277 PVLFEQPVH---------R---DDWSGLHDVSNFARDTYGISVVA------DESCRSLNDV----QKVMQENLASVVNIK 334 (438)
Q Consensus 277 ~~~iEqPl~---------~---~d~~~~a~L~~~~r~~~~iPIa~------dEsl~~~~d~----~~ll~~~a~d~i~lk 334 (438)
..-+--|.. . +.++...+..+.++ +.+..+.. |.+-.+++.+ +.+.+.+ ++.+.+.
T Consensus 101 ~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak-~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G-ad~i~l~ 178 (524)
T PRK12344 101 VVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLK-AHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWVVLC 178 (524)
T ss_pred EEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEccccccccccCCHHHHHHHHHHHHhCC-CCeEEEc
Confidence 111222221 1 11222222222222 24555544 3333444433 3334444 5666654
Q ss_pred CCcch---HHHHHHHHHHH-HHcCCeEEEccCCchhHHHH
Q 013681 335 LAKFG---VLGTLQIIKAT-RKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 335 ~~~~G---i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~ 370 (438)
=+. | .....+++... +..++++.+|+-...+++.+
T Consensus 179 DTv-G~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~A 217 (524)
T PRK12344 179 DTN-GGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVA 217 (524)
T ss_pred cCC-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHH
Confidence 433 5 34455555544 34488888888665555554
Done!