Query 013684
Match_columns 438
No_of_seqs 404 out of 3737
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 8E-24 1.7E-28 180.2 13.2 130 218-355 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 9E-24 2E-28 180.8 11.0 124 228-353 17-142 (146)
3 cd03009 TryX_like_TryX_NRX Try 99.9 3.4E-23 7.4E-28 176.3 13.0 129 56-187 3-131 (131)
4 cd03008 TryX_like_RdCVF Trypar 99.9 6.7E-23 1.4E-27 175.5 10.7 121 62-186 16-143 (146)
5 cd02964 TryX_like_family Trypa 99.9 3.7E-22 8E-27 170.1 12.7 128 219-355 2-132 (132)
6 cd02964 TryX_like_family Trypa 99.9 1E-21 2.3E-26 167.3 12.9 123 62-187 8-132 (132)
7 PF08534 Redoxin: Redoxin; In 99.8 1.5E-20 3.2E-25 163.0 11.9 117 212-340 2-131 (146)
8 KOG2501 Thioredoxin, nucleored 99.8 2.1E-20 4.6E-25 158.1 11.7 123 220-350 16-142 (157)
9 KOG2501 Thioredoxin, nucleored 99.8 6.4E-20 1.4E-24 155.3 10.9 123 56-182 17-142 (157)
10 cd02969 PRX_like1 Peroxiredoxi 99.8 2.6E-19 5.7E-24 159.5 15.1 149 213-377 1-158 (171)
11 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1E-19 2.2E-24 153.0 10.7 116 212-339 1-124 (124)
12 cd02967 mauD Methylamine utili 99.8 2.5E-19 5.3E-24 148.5 11.9 110 217-340 1-112 (114)
13 PRK15412 thiol:disulfide inter 99.8 3.5E-19 7.5E-24 160.6 13.3 116 210-340 39-159 (185)
14 PF13905 Thioredoxin_8: Thiore 99.8 2.8E-19 6E-24 143.2 11.1 93 236-336 1-95 (95)
15 PRK03147 thiol-disulfide oxido 99.8 4.8E-19 1E-23 158.0 13.6 119 211-340 36-155 (173)
16 PLN02399 phospholipid hydroper 99.8 3.9E-19 8.4E-24 164.3 12.4 120 210-340 73-217 (236)
17 cd03012 TlpA_like_DipZ_like Tl 99.8 2.8E-19 6.2E-24 151.0 10.0 105 225-340 13-122 (126)
18 PTZ00056 glutathione peroxidas 99.8 6.5E-19 1.4E-23 160.2 11.9 119 212-341 15-162 (199)
19 cd03010 TlpA_like_DsbE TlpA-li 99.8 6.6E-19 1.4E-23 148.9 11.0 112 215-340 2-117 (127)
20 PRK14018 trifunctional thiored 99.8 9.1E-19 2E-23 178.1 13.6 117 212-340 34-156 (521)
21 PLN02412 probable glutathione 99.8 8E-19 1.7E-23 155.5 11.4 116 214-340 7-147 (167)
22 cd03015 PRX_Typ2cys Peroxiredo 99.8 2.3E-18 5.1E-23 153.6 14.1 118 212-340 1-136 (173)
23 PTZ00102 disulphide isomerase; 99.8 9.6E-18 2.1E-22 173.5 20.7 73 234-337 373-445 (477)
24 TIGR02661 MauD methylamine deh 99.8 3.7E-18 7.9E-23 154.4 14.2 130 211-368 47-179 (189)
25 cd00340 GSH_Peroxidase Glutath 99.8 7.1E-19 1.5E-23 153.6 9.1 114 216-341 2-140 (152)
26 cd03018 PRX_AhpE_like Peroxire 99.8 3.5E-18 7.5E-23 148.6 12.4 117 212-340 3-130 (149)
27 PRK09437 bcp thioredoxin-depen 99.8 3.2E-18 6.9E-23 149.8 12.1 117 212-340 6-136 (154)
28 TIGR00385 dsbE periplasmic pro 99.8 4E-18 8.6E-23 152.1 12.9 117 210-340 34-154 (173)
29 PRK00522 tpx lipid hydroperoxi 99.8 3.3E-18 7.1E-23 151.6 11.7 117 212-341 20-148 (167)
30 PF13905 Thioredoxin_8: Thiore 99.8 4.6E-18 9.9E-23 136.1 11.2 93 71-168 1-95 (95)
31 cd03017 PRX_BCP Peroxiredoxin 99.8 6E-18 1.3E-22 145.4 11.7 114 215-340 2-126 (140)
32 PF08534 Redoxin: Redoxin; In 99.8 1.5E-18 3.3E-23 150.4 7.9 119 39-173 2-132 (146)
33 cd03014 PRX_Atyp2cys Peroxired 99.8 4.9E-18 1.1E-22 146.7 11.0 116 212-340 2-126 (143)
34 cd02967 mauD Methylamine utili 99.8 4.6E-18 9.9E-23 140.9 10.2 108 56-173 5-113 (114)
35 PRK10382 alkyl hydroperoxide r 99.8 9.8E-18 2.1E-22 150.4 12.7 160 211-397 3-175 (187)
36 TIGR02187 GlrX_arch Glutaredox 99.7 5.4E-17 1.2E-21 149.9 16.9 176 70-335 18-197 (215)
37 TIGR03137 AhpC peroxiredoxin. 99.7 1.7E-17 3.6E-22 149.8 13.2 160 211-397 3-175 (187)
38 PTZ00256 glutathione peroxidas 99.7 2.1E-17 4.6E-22 148.7 13.1 117 213-340 17-164 (183)
39 TIGR02540 gpx7 putative glutat 99.7 1.5E-17 3.2E-22 145.4 11.1 113 217-340 3-136 (153)
40 COG1225 Bcp Peroxiredoxin [Pos 99.7 3.4E-17 7.4E-22 140.2 12.5 118 211-340 5-136 (157)
41 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 5.9E-18 1.3E-22 142.2 7.7 117 39-171 1-124 (124)
42 cd02966 TlpA_like_family TlpA- 99.7 3.4E-17 7.4E-22 134.6 11.3 111 218-339 1-113 (116)
43 PRK15412 thiol:disulfide inter 99.7 1.3E-17 2.8E-22 150.3 9.0 118 37-173 39-160 (185)
44 PRK13190 putative peroxiredoxi 99.7 3.9E-17 8.3E-22 149.1 11.7 118 212-340 4-133 (202)
45 PRK15000 peroxidase; Provision 99.7 8.7E-17 1.9E-21 146.3 13.5 159 211-397 3-180 (200)
46 cd03010 TlpA_like_DsbE TlpA-li 99.7 2.1E-17 4.5E-22 139.8 7.9 114 42-173 2-118 (127)
47 cd03012 TlpA_like_DipZ_like Tl 99.7 3.1E-17 6.8E-22 138.5 8.9 106 61-173 13-123 (126)
48 PTZ00137 2-Cys peroxiredoxin; 99.7 8.4E-17 1.8E-21 150.6 12.6 161 210-398 68-244 (261)
49 cd00340 GSH_Peroxidase Glutath 99.7 1.3E-17 2.8E-22 145.6 6.3 117 43-173 2-140 (152)
50 PRK03147 thiol-disulfide oxido 99.7 1.1E-16 2.5E-21 142.6 12.2 119 39-172 37-155 (173)
51 PTZ00056 glutathione peroxidas 99.7 2E-16 4.3E-21 143.9 13.5 123 38-173 14-162 (199)
52 cd02971 PRX_family Peroxiredox 99.7 1.3E-16 2.7E-21 137.1 11.5 114 216-340 2-126 (140)
53 PRK13599 putative peroxiredoxi 99.7 1.5E-16 3.2E-21 146.2 11.5 120 211-340 3-135 (215)
54 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.2E-16 2.5E-21 134.3 9.8 106 217-339 1-108 (123)
55 TIGR02661 MauD methylamine deh 99.7 1E-16 2.2E-21 144.9 10.0 116 37-172 46-163 (189)
56 cd02970 PRX_like2 Peroxiredoxi 99.7 2.1E-16 4.5E-21 137.1 11.6 113 216-340 2-146 (149)
57 KOG0191 Thioredoxin/protein di 99.7 7.1E-16 1.5E-20 154.8 17.0 183 70-335 46-230 (383)
58 PTZ00253 tryparedoxin peroxida 99.7 3.2E-16 7E-21 142.9 13.3 119 211-340 7-143 (199)
59 cd02968 SCO SCO (an acronym fo 99.7 1.8E-16 3.9E-21 136.5 10.9 116 216-340 2-140 (142)
60 PLN02399 phospholipid hydroper 99.7 6.7E-17 1.4E-21 149.4 8.5 125 36-173 72-218 (236)
61 cd03016 PRX_1cys Peroxiredoxin 99.7 5.6E-16 1.2E-20 141.6 14.2 118 212-340 1-133 (203)
62 cd02969 PRX_like1 Peroxiredoxi 99.7 1.5E-16 3.3E-21 141.7 10.1 119 40-173 1-127 (171)
63 PRK14018 trifunctional thiored 99.7 5E-16 1.1E-20 158.2 14.8 119 39-173 34-157 (521)
64 PRK13191 putative peroxiredoxi 99.7 3.2E-16 7E-21 144.0 12.0 120 211-340 8-140 (215)
65 PLN02919 haloacid dehalogenase 99.7 3.4E-16 7.3E-21 174.1 13.7 118 212-340 393-519 (1057)
66 TIGR00385 dsbE periplasmic pro 99.7 9.7E-17 2.1E-21 143.1 6.5 118 37-173 34-155 (173)
67 TIGR01626 ytfJ_HI0045 conserve 99.7 7.6E-16 1.6E-20 136.6 11.2 119 228-371 51-183 (184)
68 PRK13189 peroxiredoxin; Provis 99.7 1.7E-15 3.7E-20 140.0 14.0 119 211-340 10-142 (222)
69 PRK00522 tpx lipid hydroperoxi 99.7 3.2E-16 7E-21 138.8 8.8 119 38-173 19-148 (167)
70 PLN02412 probable glutathione 99.7 1.5E-16 3.3E-21 140.8 6.6 119 41-173 7-148 (167)
71 cd03014 PRX_Atyp2cys Peroxired 99.6 3.9E-16 8.5E-21 134.7 7.9 118 39-173 2-127 (143)
72 PRK13728 conjugal transfer pro 99.6 1.1E-15 2.3E-20 134.8 10.6 96 214-338 53-151 (181)
73 cd03018 PRX_AhpE_like Peroxire 99.6 6.5E-16 1.4E-20 134.2 8.8 122 38-173 2-131 (149)
74 cd03017 PRX_BCP Peroxiredoxin 99.6 7.8E-16 1.7E-20 132.2 9.1 116 42-173 2-127 (140)
75 PRK09437 bcp thioredoxin-depen 99.6 9.2E-16 2E-20 134.2 8.4 119 38-172 5-136 (154)
76 cd02968 SCO SCO (an acronym fo 99.6 1.8E-15 3.9E-20 130.2 10.0 117 43-171 2-139 (142)
77 cd03015 PRX_Typ2cys Peroxiredo 99.6 1.3E-15 2.7E-20 136.0 9.1 118 39-173 1-137 (173)
78 cd02966 TlpA_like_family TlpA- 99.6 2.5E-15 5.4E-20 123.4 9.7 110 56-172 4-114 (116)
79 PTZ00256 glutathione peroxidas 99.6 8.9E-16 1.9E-20 138.1 7.3 121 40-173 17-165 (183)
80 TIGR03137 AhpC peroxiredoxin. 99.6 1.6E-15 3.5E-20 136.8 8.2 118 38-173 3-136 (187)
81 PRK10606 btuE putative glutath 99.6 4.8E-15 1E-19 132.3 10.6 82 215-308 4-94 (183)
82 TIGR02540 gpx7 putative glutat 99.6 1.9E-15 4.2E-20 132.0 7.2 113 56-173 7-137 (153)
83 cd02950 TxlA TRX-like protein 99.6 1.5E-14 3.2E-19 124.5 12.6 98 234-376 18-115 (142)
84 cd02971 PRX_family Peroxiredox 99.6 6.8E-15 1.5E-19 126.3 10.0 115 43-173 2-127 (140)
85 COG1225 Bcp Peroxiredoxin [Pos 99.6 4.6E-15 9.9E-20 127.2 8.5 120 37-172 4-136 (157)
86 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 5.6E-15 1.2E-19 124.0 7.7 103 56-171 5-108 (123)
87 cd02970 PRX_like2 Peroxiredoxi 99.6 1.2E-14 2.7E-19 126.0 9.0 114 43-172 2-146 (149)
88 PRK10382 alkyl hydroperoxide r 99.6 9.5E-15 2.1E-19 131.1 8.4 124 37-173 2-136 (187)
89 PRK13599 putative peroxiredoxi 99.5 1.1E-14 2.3E-19 133.8 7.7 121 38-173 3-136 (215)
90 cd02985 TRX_CDSP32 TRX family, 99.5 3.9E-14 8.6E-19 115.1 10.2 75 233-339 12-86 (103)
91 COG0450 AhpC Peroxiredoxin [Po 99.5 8.7E-14 1.9E-18 121.8 12.4 161 210-398 3-180 (194)
92 PLN02919 haloacid dehalogenase 99.5 2.2E-14 4.8E-19 159.7 10.3 122 37-173 391-520 (1057)
93 PRK13190 putative peroxiredoxi 99.5 2.1E-14 4.5E-19 131.1 8.3 120 38-173 3-134 (202)
94 TIGR01626 ytfJ_HI0045 conserve 99.5 3.2E-14 6.9E-19 126.2 8.2 125 37-173 23-164 (184)
95 KOG0190 Protein disulfide isom 99.5 3.1E-13 6.7E-18 135.3 14.9 83 58-168 29-111 (493)
96 TIGR02738 TrbB type-F conjugat 99.5 1.1E-13 2.3E-18 120.1 9.7 80 236-338 50-133 (153)
97 cd02954 DIM1 Dim1 family; Dim1 99.5 1.1E-13 2.4E-18 113.0 9.1 72 235-340 13-84 (114)
98 PRK13191 putative peroxiredoxi 99.5 4.8E-14 1E-18 129.6 7.8 121 37-173 7-141 (215)
99 cd02948 TRX_NDPK TRX domain, T 99.5 1.8E-13 3.8E-18 111.0 9.9 72 235-340 16-87 (102)
100 KOG0910 Thioredoxin-like prote 99.5 1.4E-13 3E-18 115.8 9.4 70 236-339 61-130 (150)
101 PTZ00137 2-Cys peroxiredoxin; 99.5 7.1E-14 1.5E-18 131.0 8.4 123 36-173 67-205 (261)
102 PRK15000 peroxidase; Provision 99.5 6.6E-14 1.4E-18 127.4 7.3 121 38-173 3-142 (200)
103 cd03016 PRX_1cys Peroxiredoxin 99.5 1.3E-13 2.8E-18 126.0 9.0 119 39-173 1-134 (203)
104 PHA02278 thioredoxin-like prot 99.5 3.1E-13 6.7E-18 109.3 9.3 76 235-340 13-88 (103)
105 cd03013 PRX5_like Peroxiredoxi 99.5 3.4E-13 7.3E-18 117.9 10.1 117 212-340 1-137 (155)
106 cd02963 TRX_DnaJ TRX domain, D 99.5 5.2E-13 1.1E-17 110.0 10.3 73 234-339 22-94 (111)
107 cd02999 PDI_a_ERp44_like PDIa 99.4 5.5E-13 1.2E-17 107.7 9.8 69 232-333 14-82 (100)
108 cd02950 TxlA TRX-like protein 99.4 2.3E-13 5.1E-18 117.0 6.8 88 58-173 5-94 (142)
109 PTZ00253 tryparedoxin peroxida 99.4 3.4E-13 7.4E-18 123.0 8.3 122 37-173 6-144 (199)
110 PRK13189 peroxiredoxin; Provis 99.4 4.3E-13 9.4E-18 124.0 8.7 121 37-173 9-143 (222)
111 cd02985 TRX_CDSP32 TRX family, 99.4 4.8E-13 1E-17 108.7 7.9 76 68-172 12-87 (103)
112 PRK13728 conjugal transfer pro 99.4 2.6E-13 5.7E-18 119.7 6.6 90 58-170 60-151 (181)
113 cd02956 ybbN ybbN protein fami 99.4 1.5E-12 3.2E-17 104.2 10.1 71 235-339 11-81 (96)
114 cd02954 DIM1 Dim1 family; Dim1 99.4 8E-13 1.7E-17 107.9 8.3 73 70-173 13-85 (114)
115 KOG0907 Thioredoxin [Posttrans 99.4 9.8E-13 2.1E-17 106.5 8.5 70 235-339 20-89 (106)
116 cd02951 SoxW SoxW family; SoxW 99.4 3.3E-12 7.1E-17 107.6 11.0 87 234-340 11-102 (125)
117 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 2.1E-12 4.6E-17 104.4 8.6 72 234-339 16-87 (101)
118 TIGR02738 TrbB type-F conjugat 99.4 4.2E-12 9.2E-17 110.1 10.0 87 61-170 44-133 (153)
119 TIGR01130 ER_PDI_fam protein d 99.4 4.4E-11 9.6E-16 123.1 19.3 68 70-161 17-84 (462)
120 cd02999 PDI_a_ERp44_like PDIa 99.3 2.5E-12 5.4E-17 103.8 7.6 68 67-161 14-81 (100)
121 PRK09381 trxA thioredoxin; Pro 99.3 8.7E-12 1.9E-16 102.3 10.7 71 235-339 20-90 (109)
122 PRK10606 btuE putative glutath 99.3 1.4E-12 3.1E-17 116.4 6.4 78 42-130 4-89 (183)
123 TIGR02740 TraF-like TraF-like 99.3 3.6E-12 7.9E-17 121.2 9.4 87 228-338 158-244 (271)
124 cd02953 DsbDgamma DsbD gamma f 99.3 5.5E-12 1.2E-16 102.6 9.1 77 234-339 9-89 (104)
125 PF02630 SCO1-SenC: SCO1/SenC; 99.3 1E-11 2.2E-16 110.6 11.3 121 212-340 28-171 (174)
126 KOG0910 Thioredoxin-like prote 99.3 2.1E-12 4.6E-17 108.7 6.3 70 71-171 61-130 (150)
127 cd03006 PDI_a_EFP1_N PDIa fami 99.3 5.2E-12 1.1E-16 103.9 8.6 69 235-337 28-97 (113)
128 cd03000 PDI_a_TMX3 PDIa family 99.3 1.9E-11 4.1E-16 99.4 11.7 71 235-336 14-84 (104)
129 COG3118 Thioredoxin domain-con 99.3 5.8E-12 1.3E-16 117.2 8.9 71 235-339 42-112 (304)
130 PHA02278 thioredoxin-like prot 99.3 4.7E-12 1E-16 102.5 7.1 77 70-173 13-89 (103)
131 cd02959 ERp19 Endoplasmic reti 99.3 3.1E-12 6.8E-17 106.2 6.0 77 231-339 14-92 (117)
132 cd02948 TRX_NDPK TRX domain, T 99.3 6.9E-12 1.5E-16 101.7 7.9 73 70-173 16-88 (102)
133 cd02962 TMX2 TMX2 family; comp 99.3 1.1E-11 2.4E-16 107.2 9.5 74 235-341 46-125 (152)
134 cd02986 DLP Dim1 family, Dim1- 99.3 2E-11 4.4E-16 98.9 10.2 71 235-339 13-83 (114)
135 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 6E-12 1.3E-16 101.8 7.1 80 59-169 6-85 (101)
136 PRK10996 thioredoxin 2; Provis 99.3 2.4E-11 5.1E-16 104.3 11.1 71 235-339 51-121 (139)
137 cd02994 PDI_a_TMX PDIa family, 99.3 3E-11 6.5E-16 97.6 10.9 69 234-336 15-83 (101)
138 PF13098 Thioredoxin_2: Thiore 99.3 9.7E-12 2.1E-16 102.4 8.1 95 235-339 4-98 (112)
139 cd02963 TRX_DnaJ TRX domain, D 99.3 1.1E-11 2.4E-16 102.1 8.0 74 68-171 21-94 (111)
140 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1.5E-11 3.3E-16 99.9 8.6 72 235-339 18-89 (104)
141 PLN00410 U5 snRNP protein, DIM 99.3 5E-11 1.1E-15 101.2 11.4 71 235-339 22-94 (142)
142 cd02996 PDI_a_ERp44 PDIa famil 99.3 3.9E-11 8.5E-16 98.3 10.5 75 235-337 17-91 (108)
143 cd02956 ybbN ybbN protein fami 99.3 1.9E-11 4E-16 97.8 8.2 71 70-171 11-81 (96)
144 cd02993 PDI_a_APS_reductase PD 99.3 2.4E-11 5.1E-16 99.8 9.0 73 235-338 20-93 (109)
145 PF02630 SCO1-SenC: SCO1/SenC; 99.3 3E-11 6.4E-16 107.7 10.0 120 41-172 30-171 (174)
146 cd02989 Phd_like_TxnDC9 Phosdu 99.3 4.3E-11 9.3E-16 98.8 10.2 71 235-340 21-91 (113)
147 cd03005 PDI_a_ERp46 PDIa famil 99.2 3.3E-11 7.1E-16 97.4 9.1 71 238-339 18-88 (102)
148 cd03013 PRX5_like Peroxiredoxi 99.2 2E-11 4.3E-16 106.7 8.0 118 39-173 1-138 (155)
149 cd02984 TRX_PICOT TRX domain, 99.2 4.3E-11 9.4E-16 95.8 9.2 70 236-339 14-83 (97)
150 PF00085 Thioredoxin: Thioredo 99.2 7.9E-11 1.7E-15 95.0 10.8 71 235-339 16-86 (103)
151 cd03002 PDI_a_MPD1_like PDI fa 99.2 4.8E-11 1E-15 97.7 9.4 69 235-334 17-85 (109)
152 cd02949 TRX_NTR TRX domain, no 99.2 7.9E-11 1.7E-15 94.5 10.0 71 235-339 12-82 (97)
153 cd02962 TMX2 TMX2 family; comp 99.2 4.3E-11 9.4E-16 103.5 8.8 93 70-192 46-144 (152)
154 cd03006 PDI_a_EFP1_N PDIa fami 99.2 4.5E-11 9.7E-16 98.4 8.2 68 70-168 28-96 (113)
155 KOG0907 Thioredoxin [Posttrans 99.2 2.7E-11 5.8E-16 98.2 6.8 70 70-171 20-89 (106)
156 cd03065 PDI_b_Calsequestrin_N 99.2 8.1E-11 1.8E-15 97.6 9.6 72 236-339 27-102 (120)
157 cd02986 DLP Dim1 family, Dim1- 99.2 4.6E-11 1E-15 96.8 7.9 70 70-170 13-82 (114)
158 cd02992 PDI_a_QSOX PDIa family 99.2 1.5E-10 3.2E-15 95.8 10.8 75 236-339 19-93 (114)
159 TIGR01126 pdi_dom protein disu 99.2 8.9E-11 1.9E-15 94.6 9.2 71 235-336 12-82 (102)
160 cd02957 Phd_like Phosducin (Ph 99.2 6E-11 1.3E-15 98.0 8.1 69 236-340 24-92 (113)
161 cd02965 HyaE HyaE family; HyaE 99.2 6.5E-11 1.4E-15 96.0 7.8 72 235-340 26-99 (111)
162 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 8.6E-11 1.9E-15 95.4 8.5 72 70-171 18-89 (104)
163 cd03000 PDI_a_TMX3 PDIa family 99.2 1E-10 2.2E-15 95.2 8.6 67 70-160 14-80 (104)
164 PTZ00051 thioredoxin; Provisio 99.2 1.3E-10 2.7E-15 93.3 9.0 71 235-340 17-87 (98)
165 PTZ00062 glutaredoxin; Provisi 99.2 3.3E-10 7.1E-15 102.6 12.7 61 72-172 18-78 (204)
166 cd02951 SoxW SoxW family; SoxW 99.2 7.6E-11 1.6E-15 99.2 7.9 87 70-173 12-103 (125)
167 COG1999 Uncharacterized protei 99.2 5.7E-10 1.2E-14 101.9 13.8 115 218-340 49-187 (207)
168 TIGR01068 thioredoxin thioredo 99.2 3E-10 6.5E-15 91.2 10.7 70 236-339 14-83 (101)
169 PTZ00443 Thioredoxin domain-co 99.2 2.2E-10 4.8E-15 105.4 10.9 70 236-339 52-121 (224)
170 cd03002 PDI_a_MPD1_like PDI fa 99.2 9.7E-11 2.1E-15 95.9 7.5 67 70-161 17-83 (109)
171 cd02997 PDI_a_PDIR PDIa family 99.2 2E-10 4.4E-15 93.0 9.3 75 235-339 16-90 (104)
172 cd02994 PDI_a_TMX PDIa family, 99.1 9E-11 2E-15 94.8 7.0 69 69-168 15-83 (101)
173 cd03005 PDI_a_ERp46 PDIa famil 99.1 8.5E-11 1.8E-15 94.9 6.5 69 73-169 18-86 (102)
174 cd02993 PDI_a_APS_reductase PD 99.1 1.9E-10 4.1E-15 94.4 8.3 67 70-161 20-87 (109)
175 cd02996 PDI_a_ERp44 PDIa famil 99.1 2.8E-10 6.1E-15 93.2 9.1 71 70-168 17-90 (108)
176 TIGR01130 ER_PDI_fam protein d 99.1 2.5E-09 5.5E-14 110.1 18.2 179 82-335 246-431 (462)
177 TIGR01295 PedC_BrcD bacterioci 99.1 3.8E-10 8.2E-15 94.4 9.8 80 235-340 22-106 (122)
178 TIGR02740 TraF-like TraF-like 99.1 9.1E-11 2E-15 111.6 6.7 87 62-169 157-243 (271)
179 COG0450 AhpC Peroxiredoxin [Po 99.1 1.3E-10 2.7E-15 102.0 7.0 122 37-172 3-140 (194)
180 KOG0191 Thioredoxin/protein di 99.1 9.8E-11 2.1E-15 117.7 7.2 133 236-412 47-185 (383)
181 cd02955 SSP411 TRX domain, SSP 99.1 1.1E-09 2.4E-14 91.4 12.3 85 232-341 11-98 (124)
182 PTZ00062 glutaredoxin; Provisi 99.1 1.7E-10 3.7E-15 104.4 7.8 112 237-410 18-137 (204)
183 cd02953 DsbDgamma DsbD gamma f 99.1 4E-10 8.7E-15 91.5 9.3 77 70-171 10-89 (104)
184 PLN00410 U5 snRNP protein, DIM 99.1 2.2E-10 4.9E-15 97.2 7.8 72 70-171 22-94 (142)
185 cd02952 TRP14_like Human TRX-r 99.1 2E-10 4.2E-15 95.0 7.0 79 235-339 20-106 (119)
186 COG3118 Thioredoxin domain-con 99.1 1.7E-10 3.6E-15 107.5 7.1 71 70-171 42-112 (304)
187 PRK09381 trxA thioredoxin; Pro 99.1 3.1E-10 6.7E-15 93.0 7.8 72 70-172 20-91 (109)
188 cd02992 PDI_a_QSOX PDIa family 99.1 5.3E-10 1.1E-14 92.5 9.0 69 71-161 19-87 (114)
189 TIGR02187 GlrX_arch Glutaredox 99.1 2.2E-10 4.8E-15 105.8 7.5 71 234-337 17-90 (215)
190 PRK10996 thioredoxin 2; Provis 99.1 3.7E-10 8E-15 96.8 8.2 71 70-171 51-121 (139)
191 COG0386 BtuE Glutathione perox 99.1 1.8E-09 3.9E-14 90.7 11.7 115 216-341 5-144 (162)
192 cd03001 PDI_a_P5 PDIa family, 99.1 1.2E-09 2.7E-14 88.2 10.5 65 236-333 18-82 (103)
193 cd02998 PDI_a_ERp38 PDIa famil 99.1 8.1E-10 1.8E-14 89.5 9.3 73 236-338 18-90 (105)
194 KOG2792 Putative cytochrome C 99.1 1.5E-09 3.2E-14 98.6 11.7 118 218-342 121-260 (280)
195 cd02959 ERp19 Endoplasmic reti 99.1 3E-10 6.4E-15 94.3 6.8 77 66-171 14-92 (117)
196 cd02997 PDI_a_PDIR PDIa family 99.1 4.7E-10 1E-14 90.8 7.8 74 70-170 16-89 (104)
197 PF13098 Thioredoxin_2: Thiore 99.1 3.4E-10 7.3E-15 93.2 7.1 95 70-171 4-98 (112)
198 KOG0908 Thioredoxin-like prote 99.1 4.2E-10 9.2E-15 101.5 7.9 91 234-374 19-109 (288)
199 cd02987 Phd_like_Phd Phosducin 99.0 1.1E-09 2.5E-14 97.3 10.3 69 236-340 83-151 (175)
200 cd02949 TRX_NTR TRX domain, no 99.0 8.1E-10 1.7E-14 88.6 8.2 72 70-172 12-83 (97)
201 cd02965 HyaE HyaE family; HyaE 99.0 5.4E-10 1.2E-14 90.7 7.1 72 70-172 26-99 (111)
202 cd02975 PfPDO_like_N Pyrococcu 99.0 2.1E-09 4.5E-14 88.8 10.3 63 236-332 22-84 (113)
203 cd02984 TRX_PICOT TRX domain, 99.0 9.1E-10 2E-14 88.0 8.0 71 71-172 14-84 (97)
204 cd02989 Phd_like_TxnDC9 Phosdu 99.0 1.1E-09 2.4E-14 90.3 8.7 71 70-172 21-91 (113)
205 TIGR01126 pdi_dom protein disu 99.0 5.9E-10 1.3E-14 89.8 6.9 70 70-167 12-81 (102)
206 cd02961 PDI_a_family Protein D 99.0 7.5E-10 1.6E-14 88.5 7.3 74 235-339 14-87 (101)
207 cd02952 TRP14_like Human TRX-r 99.0 5.9E-10 1.3E-14 92.2 6.4 80 70-172 20-107 (119)
208 PTZ00051 thioredoxin; Provisio 99.0 1.1E-09 2.3E-14 87.8 7.6 72 70-173 17-88 (98)
209 PF00085 Thioredoxin: Thioredo 99.0 1.2E-09 2.6E-14 88.1 7.6 70 70-170 16-85 (103)
210 cd02998 PDI_a_ERp38 PDIa famil 99.0 2E-09 4.3E-14 87.2 8.2 67 71-161 18-84 (105)
211 KOG0855 Alkyl hydroperoxide re 99.0 2E-09 4.4E-14 90.9 8.3 112 211-334 64-185 (211)
212 TIGR00411 redox_disulf_1 small 99.0 4.6E-09 1E-13 81.1 9.5 63 239-337 2-64 (82)
213 KOG0852 Alkyl hydroperoxide re 99.0 9.8E-09 2.1E-13 87.8 11.9 117 214-340 8-140 (196)
214 cd02957 Phd_like Phosducin (Ph 99.0 1.9E-09 4.1E-14 89.0 7.5 69 71-172 24-92 (113)
215 TIGR00424 APS_reduc 5'-adenyly 99.0 2.6E-09 5.6E-14 108.0 9.8 70 234-334 369-438 (463)
216 PTZ00443 Thioredoxin domain-co 99.0 1.4E-09 3.1E-14 100.1 7.4 69 71-170 52-120 (224)
217 cd02988 Phd_like_VIAF Phosduci 99.0 2.1E-09 4.5E-14 97.0 8.1 67 236-340 102-168 (192)
218 COG1999 Uncharacterized protei 98.9 7.7E-09 1.7E-13 94.5 11.4 116 53-172 49-187 (207)
219 cd03001 PDI_a_P5 PDIa family, 98.9 3E-09 6.4E-14 86.0 7.8 64 71-161 18-81 (103)
220 cd03065 PDI_b_Calsequestrin_N 98.9 3E-09 6.5E-14 88.2 7.3 71 71-170 27-101 (120)
221 cd02955 SSP411 TRX domain, SSP 98.9 6.8E-09 1.5E-13 86.7 9.5 85 67-173 11-98 (124)
222 TIGR01295 PedC_BrcD bacterioci 98.9 4.1E-09 9E-14 88.1 8.0 81 70-172 22-106 (122)
223 TIGR01068 thioredoxin thioredo 98.9 4.6E-09 9.9E-14 84.2 7.9 70 71-171 14-83 (101)
224 PLN02309 5'-adenylylsulfate re 98.9 6.2E-09 1.4E-13 105.2 10.5 68 235-333 364-432 (457)
225 cd02961 PDI_a_family Protein D 98.9 2.9E-09 6.3E-14 85.0 6.1 67 70-161 14-80 (101)
226 cd02960 AGR Anterior Gradient 98.9 7.9E-09 1.7E-13 86.4 8.4 102 232-371 19-123 (130)
227 cd02995 PDI_a_PDI_a'_C PDIa fa 98.9 5.2E-09 1.1E-13 84.6 7.2 67 236-334 18-84 (104)
228 cd02975 PfPDO_like_N Pyrococcu 98.9 7.7E-09 1.7E-13 85.3 8.0 63 71-161 22-84 (113)
229 cd02947 TRX_family TRX family; 98.8 1.9E-08 4.1E-13 78.7 9.3 69 236-339 10-78 (93)
230 PTZ00102 disulphide isomerase; 98.8 1.9E-08 4E-13 104.3 11.9 73 234-336 47-119 (477)
231 KOG0190 Protein disulfide isom 98.8 6.7E-09 1.4E-13 104.5 7.7 72 234-336 40-111 (493)
232 PRK00293 dipZ thiol:disulfide 98.8 1.3E-08 2.8E-13 107.0 10.1 76 232-337 470-548 (571)
233 KOG2792 Putative cytochrome C 98.8 2.1E-08 4.5E-13 91.2 9.9 120 50-173 118-259 (280)
234 cd02995 PDI_a_PDI_a'_C PDIa fa 98.8 1.6E-08 3.5E-13 81.7 8.4 78 58-161 4-82 (104)
235 TIGR00424 APS_reduc 5'-adenyly 98.8 1.1E-08 2.3E-13 103.6 8.2 69 69-161 369-437 (463)
236 KOG1651 Glutathione peroxidase 98.8 4.6E-08 9.9E-13 83.3 9.6 117 215-341 13-153 (171)
237 cd02987 Phd_like_Phd Phosducin 98.7 2.3E-08 4.9E-13 89.0 7.5 69 71-172 83-151 (175)
238 KOG0855 Alkyl hydroperoxide re 98.7 2.8E-08 6E-13 84.2 7.3 114 35-161 61-183 (211)
239 KOG0908 Thioredoxin-like prote 98.7 1.1E-08 2.4E-13 92.5 5.2 73 65-169 15-87 (288)
240 cd02982 PDI_b'_family Protein 98.7 4.9E-08 1.1E-12 78.9 8.4 65 235-332 11-77 (103)
241 cd02958 UAS UAS family; UAS is 98.7 1.7E-07 3.8E-12 77.4 10.9 78 231-339 12-93 (114)
242 cd02947 TRX_family TRX family; 98.7 7E-08 1.5E-12 75.4 7.7 67 71-169 10-76 (93)
243 PHA02125 thioredoxin-like prot 98.7 1E-07 2.2E-12 72.5 8.2 57 240-339 2-58 (75)
244 cd02973 TRX_GRX_like Thioredox 98.7 9.1E-08 2E-12 70.9 7.4 64 239-339 2-65 (67)
245 PLN02309 5'-adenylylsulfate re 98.7 6.3E-08 1.4E-12 98.0 8.5 67 70-161 364-431 (457)
246 cd03007 PDI_a_ERp29_N PDIa fam 98.7 1.7E-07 3.7E-12 76.9 9.4 73 235-335 17-91 (116)
247 KOG0912 Thiol-disulfide isomer 98.7 1.1E-07 2.3E-12 88.4 9.0 94 236-371 13-106 (375)
248 TIGR00411 redox_disulf_1 small 98.6 1.2E-07 2.6E-12 73.1 7.3 58 74-158 2-59 (82)
249 COG2077 Tpx Peroxiredoxin [Pos 98.6 3.7E-07 8.1E-12 76.6 10.2 121 211-344 19-151 (158)
250 PRK00293 dipZ thiol:disulfide 98.6 1.1E-07 2.3E-12 100.2 8.7 74 69-169 472-548 (571)
251 TIGR00412 redox_disulf_2 small 98.6 1.2E-07 2.5E-12 72.3 6.7 60 241-339 3-62 (76)
252 cd02988 Phd_like_VIAF Phosduci 98.6 1.4E-07 3.1E-12 85.1 7.1 68 71-173 102-169 (192)
253 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 2.4E-07 5.2E-12 72.8 7.1 72 231-339 7-78 (89)
254 PF13728 TraF: F plasmid trans 98.5 3.4E-07 7.5E-12 84.1 8.8 85 232-340 116-200 (215)
255 cd02973 TRX_GRX_like Thioredox 98.5 3.2E-07 7E-12 67.9 7.1 57 74-158 2-58 (67)
256 KOG4277 Uncharacterized conser 98.5 1.6E-07 3.4E-12 87.0 6.3 90 215-339 25-115 (468)
257 cd02982 PDI_b'_family Protein 98.5 3.8E-07 8.2E-12 73.6 6.6 64 71-161 12-77 (103)
258 PF07649 C1_3: C1-like domain; 98.5 3.5E-08 7.5E-13 60.7 0.3 29 399-427 1-30 (30)
259 TIGR02739 TraF type-F conjugat 98.5 8.8E-07 1.9E-11 82.9 9.5 105 232-373 146-250 (256)
260 PF00255 GSHPx: Glutathione pe 98.4 1.3E-06 2.7E-11 70.8 8.4 79 218-307 3-89 (108)
261 KOG4277 Uncharacterized conser 98.4 2.2E-07 4.8E-12 86.1 4.2 76 71-173 43-118 (468)
262 TIGR03143 AhpF_homolog putativ 98.4 7.3E-06 1.6E-10 86.5 16.2 179 66-339 361-542 (555)
263 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 9.1E-07 2E-11 69.5 7.0 72 66-171 7-78 (89)
264 cd02960 AGR Anterior Gradient 98.4 8.6E-07 1.9E-11 74.2 7.1 75 67-172 19-96 (130)
265 KOG0912 Thiol-disulfide isomer 98.4 6.6E-07 1.4E-11 83.3 6.5 76 71-172 13-88 (375)
266 PRK13703 conjugal pilus assemb 98.4 1.3E-06 2.9E-11 81.3 8.6 84 232-339 139-222 (248)
267 PF13899 Thioredoxin_7: Thiore 98.4 9.8E-07 2.1E-11 68.3 6.3 47 233-289 14-63 (82)
268 KOG0854 Alkyl hydroperoxide re 98.4 6.4E-06 1.4E-10 70.7 11.6 118 212-339 8-146 (224)
269 PHA02125 thioredoxin-like prot 98.3 1E-06 2.2E-11 67.0 6.0 50 75-157 2-51 (75)
270 KOG1731 FAD-dependent sulfhydr 98.3 1.5E-06 3.2E-11 87.7 8.5 68 72-161 58-125 (606)
271 TIGR00412 redox_disulf_2 small 98.3 1.4E-06 3E-11 66.4 6.4 54 75-158 2-55 (76)
272 COG2077 Tpx Peroxiredoxin [Pos 98.3 2.9E-06 6.2E-11 71.3 8.3 126 37-179 18-154 (158)
273 KOG0852 Alkyl hydroperoxide re 98.3 1.7E-06 3.7E-11 74.2 7.0 122 39-171 6-139 (196)
274 PF03107 C1_2: C1 domain; Int 98.3 4.5E-07 9.7E-12 55.6 2.3 29 399-427 1-30 (30)
275 PF13899 Thioredoxin_7: Thiore 98.3 1.9E-06 4.1E-11 66.7 6.2 44 69-115 15-61 (82)
276 cd03007 PDI_a_ERp29_N PDIa fam 98.3 1.2E-06 2.7E-11 71.9 5.3 69 70-161 17-89 (116)
277 smart00594 UAS UAS domain. 98.2 9.3E-06 2E-10 67.9 10.1 73 231-334 22-97 (122)
278 PF00837 T4_deiodinase: Iodoth 98.2 4.9E-06 1.1E-10 76.0 8.8 134 211-364 74-233 (237)
279 COG0386 BtuE Glutathione perox 98.2 4.3E-06 9.2E-11 70.6 7.6 111 56-173 10-144 (162)
280 cd02958 UAS UAS family; UAS is 98.2 6.8E-06 1.5E-10 67.8 8.6 79 66-171 12-93 (114)
281 PF14595 Thioredoxin_9: Thiore 98.2 3.5E-06 7.5E-11 71.0 6.4 78 232-340 37-114 (129)
282 KOG1731 FAD-dependent sulfhydr 98.1 2.1E-06 4.7E-11 86.6 4.8 70 237-334 58-127 (606)
283 PF13728 TraF: F plasmid trans 98.1 5.4E-06 1.2E-10 76.2 6.5 80 66-166 115-194 (215)
284 PF00255 GSHPx: Glutathione pe 98.1 1.2E-05 2.6E-10 65.2 7.5 58 56-116 6-63 (108)
285 smart00594 UAS UAS domain. 98.0 2E-05 4.4E-10 65.8 8.2 70 69-166 25-97 (122)
286 COG0526 TrxA Thiol-disulfide i 98.0 1.6E-05 3.4E-10 64.4 7.4 67 232-330 28-96 (127)
287 PF03190 Thioredox_DsbH: Prote 98.0 3.1E-05 6.8E-10 67.2 9.4 87 228-340 29-119 (163)
288 cd01659 TRX_superfamily Thiore 98.0 2.5E-05 5.5E-10 55.7 7.6 63 240-333 1-63 (69)
289 COG2143 Thioredoxin-related pr 98.0 0.0001 2.3E-09 62.3 11.6 87 232-339 38-131 (182)
290 COG0526 TrxA Thiol-disulfide i 98.0 2.7E-05 5.8E-10 63.0 7.3 70 64-160 25-97 (127)
291 TIGR02739 TraF type-F conjugat 97.9 2.6E-05 5.6E-10 73.1 6.6 78 66-161 145-222 (256)
292 PF14595 Thioredoxin_9: Thiore 97.9 2E-05 4.3E-10 66.4 5.2 78 65-173 35-115 (129)
293 PRK13703 conjugal pilus assemb 97.9 2.9E-05 6.4E-10 72.3 6.3 78 66-161 138-215 (248)
294 cd01659 TRX_superfamily Thiore 97.8 8.2E-05 1.8E-09 52.9 6.9 62 75-161 1-62 (69)
295 PRK11509 hydrogenase-1 operon 97.8 0.00026 5.6E-09 59.4 10.4 90 238-374 36-127 (132)
296 COG4232 Thiol:disulfide interc 97.8 3E-05 6.5E-10 79.3 5.6 74 70-168 473-547 (569)
297 KOG0914 Thioredoxin-like prote 97.7 6E-05 1.3E-09 67.2 5.0 93 235-362 143-242 (265)
298 COG4232 Thiol:disulfide interc 97.7 7.4E-05 1.6E-09 76.5 6.3 76 235-338 473-549 (569)
299 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00035 7.6E-09 52.0 8.4 59 240-336 2-60 (74)
300 PF06110 DUF953: Eukaryotic pr 97.6 0.00025 5.5E-09 58.4 7.6 78 235-338 18-104 (119)
301 cd02991 UAS_ETEA UAS family, E 97.6 0.00075 1.6E-08 55.8 10.0 77 231-339 12-95 (116)
302 COG2143 Thioredoxin-related pr 97.6 0.0004 8.7E-09 58.8 8.3 87 66-171 37-131 (182)
303 TIGR02200 GlrX_actino Glutared 97.6 0.00037 8.1E-09 52.6 7.5 63 240-339 2-65 (77)
304 KOG0854 Alkyl hydroperoxide re 97.5 0.0003 6.6E-09 60.6 7.3 120 37-171 6-146 (224)
305 KOG1651 Glutathione peroxidase 97.5 0.00035 7.6E-09 59.9 6.9 65 41-115 12-76 (171)
306 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00023 5E-09 54.8 5.2 65 240-337 1-65 (84)
307 cd02340 ZZ_NBR1_like Zinc fing 97.4 6.6E-05 1.4E-09 50.1 1.7 31 400-430 2-33 (43)
308 PRK11657 dsbG disulfide isomer 97.4 0.0012 2.5E-08 62.4 10.8 93 235-339 116-235 (251)
309 PF03190 Thioredox_DsbH: Prote 97.4 8.2E-05 1.8E-09 64.6 2.5 86 64-171 30-118 (163)
310 TIGR02196 GlrX_YruB Glutaredox 97.4 0.00044 9.6E-09 51.4 6.1 56 75-159 2-57 (74)
311 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00029 6.2E-09 54.2 5.1 60 75-158 1-60 (84)
312 PF06110 DUF953: Eukaryotic pr 97.4 0.00031 6.7E-09 57.9 5.0 72 70-161 18-98 (119)
313 TIGR02200 GlrX_actino Glutared 97.3 0.00065 1.4E-08 51.2 6.4 63 75-171 2-65 (77)
314 PRK10877 protein disulfide iso 97.3 0.0035 7.6E-08 58.5 12.3 87 235-337 106-214 (232)
315 cd02343 ZZ_EF Zinc finger, ZZ 97.2 0.00014 3E-09 49.2 1.0 29 400-428 2-31 (48)
316 PF13192 Thioredoxin_3: Thiore 97.1 0.0067 1.5E-07 45.9 9.9 58 244-340 6-63 (76)
317 cd02339 ZZ_Mind_bomb Zinc fing 97.1 0.00028 6E-09 47.5 1.6 30 400-429 2-33 (45)
318 cd03020 DsbA_DsbC_DsbG DsbA fa 97.0 0.0041 8.9E-08 56.5 9.6 95 229-337 70-184 (197)
319 PF00837 T4_deiodinase: Iodoth 97.0 0.00085 1.9E-08 61.5 4.8 68 36-112 72-142 (237)
320 PRK11200 grxA glutaredoxin 1; 97.0 0.0046 1E-07 47.9 8.4 66 240-338 3-70 (85)
321 PRK15317 alkyl hydroperoxide r 97.0 0.018 4E-07 60.4 15.5 71 232-339 112-182 (517)
322 cd02249 ZZ Zinc finger, ZZ typ 97.0 0.0004 8.8E-09 47.1 1.7 32 399-430 1-33 (46)
323 cd02991 UAS_ETEA UAS family, E 97.0 0.0028 6.1E-08 52.3 6.9 67 67-161 13-85 (116)
324 cd02334 ZZ_dystrophin Zinc fin 97.0 0.00041 8.9E-09 47.5 1.6 30 400-429 2-33 (49)
325 cd02342 ZZ_UBA_plant Zinc fing 96.9 0.00039 8.5E-09 45.5 1.4 32 400-431 2-35 (43)
326 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0068 1.5E-07 55.0 9.3 96 64-169 70-184 (197)
327 KOG0911 Glutaredoxin-related p 96.8 0.001 2.2E-08 60.1 3.5 70 235-339 16-85 (227)
328 PRK11657 dsbG disulfide isomer 96.8 0.0059 1.3E-07 57.6 8.4 92 69-168 115-232 (251)
329 PF00462 Glutaredoxin: Glutare 96.7 0.011 2.3E-07 42.4 7.6 59 240-336 1-59 (60)
330 cd02344 ZZ_HERC2 Zinc finger, 96.7 0.00098 2.1E-08 44.7 1.7 30 400-429 2-33 (45)
331 KOG3425 Uncharacterized conser 96.6 0.0034 7.3E-08 50.9 4.7 72 70-161 24-104 (128)
332 PRK10877 protein disulfide iso 96.6 0.014 3E-07 54.5 9.5 83 70-158 106-208 (232)
333 cd02335 ZZ_ADA2 Zinc finger, Z 96.6 0.0013 2.7E-08 45.4 1.9 32 399-430 1-34 (49)
334 cd03019 DsbA_DsbA DsbA family, 96.5 0.013 2.9E-07 51.8 8.5 33 235-267 14-46 (178)
335 PF02114 Phosducin: Phosducin; 96.5 0.0093 2E-07 56.6 7.8 70 235-340 145-214 (265)
336 KOG3425 Uncharacterized conser 96.5 0.0076 1.7E-07 48.9 6.0 72 235-332 24-104 (128)
337 PF13192 Thioredoxin_3: Thiore 96.5 0.013 2.8E-07 44.3 6.9 59 78-172 5-63 (76)
338 cd02972 DsbA_family DsbA famil 96.4 0.0066 1.4E-07 47.4 5.5 81 240-331 1-91 (98)
339 TIGR03140 AhpF alkyl hydropero 96.4 0.1 2.2E-06 54.7 16.0 71 232-339 113-183 (515)
340 PF00462 Glutaredoxin: Glutare 96.4 0.0041 8.8E-08 44.6 3.8 55 75-158 1-55 (60)
341 smart00291 ZnF_ZZ Zinc-binding 96.4 0.0021 4.6E-08 43.1 2.1 32 398-429 4-36 (44)
342 PF04592 SelP_N: Selenoprotein 96.4 0.033 7.1E-07 50.9 10.2 115 215-340 9-126 (238)
343 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.4 0.0018 3.8E-08 44.2 1.6 32 399-430 1-36 (48)
344 PF00569 ZZ: Zinc finger, ZZ t 96.4 0.00077 1.7E-08 45.7 -0.3 33 397-429 3-37 (46)
345 PRK11200 grxA glutaredoxin 1; 96.3 0.008 1.7E-07 46.5 5.3 40 74-117 2-41 (85)
346 KOG0911 Glutaredoxin-related p 96.3 0.015 3.3E-07 52.6 7.5 63 70-160 16-78 (227)
347 cd02976 NrdH NrdH-redoxin (Nrd 96.2 0.048 1E-06 40.1 8.9 55 240-329 2-56 (73)
348 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.0094 2E-07 45.5 5.1 58 75-158 2-59 (82)
349 KOG0914 Thioredoxin-like prote 96.2 0.0085 1.8E-07 53.8 5.2 93 70-194 143-242 (265)
350 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.01 2.2E-07 45.3 5.1 63 240-337 2-64 (82)
351 cd02338 ZZ_PCMF_like Zinc fing 96.1 0.0031 6.7E-08 43.4 1.6 31 400-430 2-34 (49)
352 cd02345 ZZ_dah Zinc finger, ZZ 96.0 0.0035 7.5E-08 43.1 1.5 30 400-429 2-33 (49)
353 cd02976 NrdH NrdH-redoxin (Nrd 95.8 0.026 5.7E-07 41.5 5.6 55 75-158 2-56 (73)
354 cd02972 DsbA_family DsbA famil 95.7 0.028 6.1E-07 43.7 5.9 83 75-160 1-91 (98)
355 TIGR03143 AhpF_homolog putativ 95.7 0.04 8.6E-07 58.4 8.7 74 232-339 362-438 (555)
356 PRK11509 hydrogenase-1 operon 95.6 0.061 1.3E-06 45.2 7.6 78 65-172 26-107 (132)
357 cd02066 GRX_family Glutaredoxi 95.6 0.086 1.9E-06 38.4 7.8 61 240-338 2-62 (72)
358 TIGR02183 GRXA Glutaredoxin, G 95.3 0.066 1.4E-06 41.5 6.5 65 240-337 2-68 (86)
359 PHA03050 glutaredoxin; Provisi 95.3 0.064 1.4E-06 43.6 6.6 61 75-158 15-75 (108)
360 PF05988 DUF899: Bacterial pro 95.1 0.21 4.6E-06 45.1 10.0 113 214-339 44-171 (211)
361 PF13848 Thioredoxin_6: Thiore 95.1 1.3 2.7E-05 39.1 15.3 131 142-336 31-164 (184)
362 cd02337 ZZ_CBP Zinc finger, ZZ 95.1 0.012 2.6E-07 38.7 1.5 32 399-431 1-33 (41)
363 COG1331 Highly conserved prote 95.0 0.09 1.9E-06 55.3 8.3 82 232-339 39-124 (667)
364 TIGR02190 GlrX-dom Glutaredoxi 95.0 0.075 1.6E-06 40.4 5.9 58 71-158 6-63 (79)
365 TIGR02183 GRXA Glutaredoxin, G 94.9 0.051 1.1E-06 42.1 4.8 38 75-116 2-39 (86)
366 KOG4582 Uncharacterized conser 94.8 0.012 2.5E-07 56.3 1.2 32 399-430 153-186 (278)
367 PF05176 ATP-synt_10: ATP10 pr 94.8 0.35 7.6E-06 45.6 10.9 133 215-368 100-250 (252)
368 TIGR02189 GlrX-like_plant Glut 94.8 0.074 1.6E-06 42.5 5.6 58 75-158 10-67 (99)
369 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.098 2.1E-06 39.8 6.1 60 239-337 9-68 (79)
370 cd03023 DsbA_Com1_like DsbA fa 94.7 0.06 1.3E-06 46.0 5.3 32 235-266 4-35 (154)
371 KOG0913 Thiol-disulfide isomer 94.6 0.0093 2E-07 54.2 -0.0 71 238-341 41-111 (248)
372 TIGR02181 GRX_bact Glutaredoxi 94.6 0.076 1.6E-06 40.2 5.0 55 75-158 1-55 (79)
373 PHA03050 glutaredoxin; Provisi 94.6 0.067 1.4E-06 43.5 4.9 67 240-338 15-81 (108)
374 cd03023 DsbA_Com1_like DsbA fa 94.5 0.066 1.4E-06 45.8 5.1 39 70-112 4-42 (154)
375 cd03418 GRX_GRXb_1_3_like Glut 94.5 0.18 4E-06 37.5 6.9 60 240-337 2-62 (75)
376 cd02066 GRX_family Glutaredoxi 94.5 0.095 2E-06 38.2 5.2 55 75-158 2-56 (72)
377 PRK10329 glutaredoxin-like pro 94.5 0.47 1E-05 36.3 9.2 54 240-329 3-56 (81)
378 cd03418 GRX_GRXb_1_3_like Glut 94.4 0.097 2.1E-06 39.0 5.3 55 75-158 2-57 (75)
379 TIGR02189 GlrX-like_plant Glut 94.4 0.13 2.7E-06 41.2 6.2 63 240-337 10-72 (99)
380 PF05988 DUF899: Bacterial pro 94.4 0.11 2.3E-06 47.0 6.2 101 55-161 50-163 (211)
381 TIGR02181 GRX_bact Glutaredoxi 94.4 0.12 2.5E-06 39.2 5.7 59 241-337 2-60 (79)
382 PF11009 DUF2847: Protein of u 94.4 0.24 5.2E-06 39.8 7.5 75 236-340 19-94 (105)
383 KOG1672 ATP binding protein [P 94.2 0.19 4.1E-06 44.5 7.1 90 235-362 83-172 (211)
384 PF13462 Thioredoxin_4: Thiore 94.1 0.18 3.9E-06 43.7 7.1 51 229-287 5-55 (162)
385 PF13462 Thioredoxin_4: Thiore 94.0 0.17 3.7E-06 43.8 6.7 50 65-115 6-55 (162)
386 TIGR02194 GlrX_NrdH Glutaredox 93.9 0.39 8.5E-06 35.6 7.6 53 241-329 2-54 (72)
387 cd03029 GRX_hybridPRX5 Glutare 93.9 0.2 4.4E-06 37.1 6.0 54 75-158 3-56 (72)
388 cd03027 GRX_DEP Glutaredoxin ( 93.6 0.3 6.5E-06 36.3 6.5 61 240-338 3-63 (73)
389 PF02114 Phosducin: Phosducin; 93.5 0.17 3.7E-06 48.1 6.1 69 71-172 146-214 (265)
390 cd03029 GRX_hybridPRX5 Glutare 93.4 0.3 6.5E-06 36.2 6.2 59 240-337 3-61 (72)
391 KOG0913 Thiol-disulfide isomer 93.3 0.019 4.1E-07 52.3 -0.6 68 72-169 40-107 (248)
392 PRK10329 glutaredoxin-like pro 93.3 0.31 6.6E-06 37.3 6.2 35 75-118 3-37 (81)
393 COG0678 AHP1 Peroxiredoxin [Po 93.2 0.61 1.3E-05 39.7 8.1 118 211-340 4-145 (165)
394 cd03027 GRX_DEP Glutaredoxin ( 93.1 0.23 5E-06 36.9 5.2 55 75-158 3-57 (73)
395 PF09695 YtfJ_HI0045: Bacteria 93.0 1.6 3.4E-05 37.7 10.6 119 228-368 29-158 (160)
396 TIGR02194 GlrX_NrdH Glutaredox 92.9 0.33 7.1E-06 36.0 5.8 34 76-118 2-35 (72)
397 PF04592 SelP_N: Selenoprotein 92.8 0.4 8.7E-06 44.0 7.1 106 63-173 18-127 (238)
398 PF11009 DUF2847: Protein of u 92.7 0.55 1.2E-05 37.8 7.0 76 70-172 18-94 (105)
399 COG0695 GrxC Glutaredoxin and 92.5 0.47 1E-05 36.2 6.3 34 75-115 3-36 (80)
400 PRK10638 glutaredoxin 3; Provi 92.5 0.69 1.5E-05 35.3 7.3 61 240-338 4-64 (83)
401 KOG3414 Component of the U4/U6 92.5 0.63 1.4E-05 38.3 7.1 65 70-161 22-86 (142)
402 cd03028 GRX_PICOT_like Glutare 92.4 0.51 1.1E-05 36.8 6.5 65 235-337 6-74 (90)
403 cd02336 ZZ_RSC8 Zinc finger, Z 92.2 0.096 2.1E-06 35.2 1.8 32 399-430 1-33 (45)
404 TIGR00365 monothiol glutaredox 92.1 0.59 1.3E-05 37.1 6.6 64 237-338 12-79 (97)
405 PF02966 DIM1: Mitosis protein 92.0 0.68 1.5E-05 38.5 6.9 45 70-117 19-63 (133)
406 KOG3414 Component of the U4/U6 91.8 0.92 2E-05 37.3 7.3 62 235-330 22-84 (142)
407 cd03028 GRX_PICOT_like Glutare 91.8 0.42 9.1E-06 37.3 5.4 60 70-158 6-69 (90)
408 PF13911 AhpC-TSA_2: AhpC/TSA 91.7 0.72 1.6E-05 37.7 6.9 53 258-321 2-54 (115)
409 COG0678 AHP1 Peroxiredoxin [Po 91.6 0.32 6.8E-06 41.4 4.6 118 38-173 4-146 (165)
410 PF00130 C1_1: Phorbol esters/ 91.5 0.15 3.2E-06 35.5 2.2 35 397-431 10-47 (53)
411 COG4312 Uncharacterized protei 91.2 0.46 9.9E-06 43.0 5.5 93 216-321 52-153 (247)
412 PRK15317 alkyl hydroperoxide r 91.1 0.54 1.2E-05 49.3 7.0 64 67-158 112-175 (517)
413 cd03019 DsbA_DsbA DsbA family, 90.5 0.35 7.5E-06 42.6 4.2 41 70-113 14-54 (178)
414 KOG1752 Glutaredoxin and relat 90.3 0.84 1.8E-05 36.7 5.8 63 75-169 16-78 (104)
415 PRK10638 glutaredoxin 3; Provi 90.2 0.66 1.4E-05 35.4 5.0 55 75-158 4-58 (83)
416 TIGR00365 monothiol glutaredox 90.0 0.73 1.6E-05 36.6 5.3 59 71-158 11-73 (97)
417 cd02983 P5_C P5 family, C-term 89.7 2.1 4.5E-05 36.0 8.0 67 237-335 21-93 (130)
418 COG4312 Uncharacterized protei 89.4 0.62 1.3E-05 42.1 4.8 90 55-150 56-153 (247)
419 PF02966 DIM1: Mitosis protein 89.1 2.4 5.2E-05 35.4 7.6 59 235-327 19-77 (133)
420 PRK10824 glutaredoxin-4; Provi 89.1 0.63 1.4E-05 38.2 4.3 64 71-169 14-81 (115)
421 COG0695 GrxC Glutaredoxin and 88.9 1.7 3.7E-05 33.1 6.4 20 240-259 3-22 (80)
422 PF05768 DUF836: Glutaredoxin- 88.8 1.3 2.9E-05 33.7 5.8 56 240-331 2-57 (81)
423 KOG1752 Glutaredoxin and relat 88.7 1.2 2.5E-05 35.9 5.4 63 240-337 16-78 (104)
424 cd00029 C1 Protein kinase C co 88.4 0.29 6.2E-06 33.3 1.6 35 397-431 10-47 (50)
425 KOG2603 Oligosaccharyltransfer 88.3 5.9 0.00013 38.0 10.7 92 232-349 56-152 (331)
426 PF13778 DUF4174: Domain of un 88.2 4.9 0.00011 33.1 9.1 90 231-340 3-95 (118)
427 KOG3507 DNA-directed RNA polym 88.2 0.19 4.2E-06 35.1 0.6 25 398-422 20-47 (62)
428 TIGR03140 AhpF alkyl hydropero 88.0 1.3 2.8E-05 46.5 6.9 65 66-158 112-176 (515)
429 COG4545 Glutaredoxin-related p 86.1 2.7 5.8E-05 31.3 5.5 73 241-338 5-77 (85)
430 PRK10824 glutaredoxin-4; Provi 86.0 1.4 3.1E-05 36.1 4.7 25 237-261 15-43 (115)
431 COG1331 Highly conserved prote 85.8 1.5 3.3E-05 46.4 5.8 82 67-171 39-124 (667)
432 PF05768 DUF836: Glutaredoxin- 85.3 1.5 3.3E-05 33.4 4.3 56 75-160 2-57 (81)
433 PRK10954 periplasmic protein d 84.0 0.91 2E-05 41.4 3.0 33 235-267 36-71 (207)
434 PF10571 UPF0547: Uncharacteri 83.8 0.64 1.4E-05 27.2 1.2 23 400-422 2-24 (26)
435 KOG1672 ATP binding protein [P 83.1 2.4 5.2E-05 37.8 5.0 69 70-170 83-151 (211)
436 PRK10954 periplasmic protein d 82.2 1.3 2.8E-05 40.4 3.2 41 69-112 35-78 (207)
437 PRK12759 bifunctional gluaredo 81.4 2.8 6E-05 42.6 5.6 68 240-337 4-71 (410)
438 KOG0541 Alkyl hydroperoxide re 80.6 4.3 9.3E-05 34.9 5.4 63 63-128 34-100 (171)
439 PRK12759 bifunctional gluaredo 79.2 3.4 7.3E-05 42.0 5.3 35 75-118 4-38 (410)
440 KOG4498 Uncharacterized conser 78.9 3.9 8.4E-05 36.3 4.8 55 57-113 35-91 (197)
441 smart00109 C1 Protein kinase C 78.7 0.77 1.7E-05 30.8 0.4 35 397-431 10-46 (49)
442 PF07449 HyaE: Hydrogenase-1 e 77.9 2.1 4.5E-05 34.6 2.7 26 313-339 72-97 (107)
443 cd03073 PDI_b'_ERp72_ERp57 PDI 77.8 6.7 0.00015 31.9 5.8 51 251-334 33-88 (111)
444 KOG2603 Oligosaccharyltransfer 77.7 18 0.00038 34.9 9.1 79 67-169 56-141 (331)
445 PF12760 Zn_Tnp_IS1595: Transp 76.5 2.3 5E-05 28.6 2.2 22 399-420 19-45 (46)
446 PHA00626 hypothetical protein 75.3 2.3 4.9E-05 29.7 1.9 14 410-423 21-34 (59)
447 cd03072 PDI_b'_ERp44 PDIb' fam 75.1 22 0.00048 28.8 8.2 50 252-334 30-84 (111)
448 KOG2507 Ubiquitin regulatory p 74.3 23 0.0005 35.5 9.2 27 313-339 67-93 (506)
449 PRK11788 tetratricopeptide rep 74.3 4.9 0.00011 40.0 5.0 24 398-421 354-378 (389)
450 PF01216 Calsequestrin: Calseq 74.3 40 0.00086 33.1 10.6 74 236-341 51-129 (383)
451 KOG4286 Dystrophin-like protei 73.7 1.2 2.5E-05 47.3 0.3 31 398-428 603-635 (966)
452 PF05176 ATP-synt_10: ATP10 pr 73.5 7.8 0.00017 36.5 5.7 119 42-173 100-234 (252)
453 PF03604 DNA_RNApol_7kD: DNA d 72.7 1.4 3.1E-05 27.2 0.4 24 399-422 1-27 (32)
454 PF09695 YtfJ_HI0045: Bacteria 70.3 21 0.00045 31.0 7.0 104 63-173 29-142 (160)
455 PF08790 zf-LYAR: LYAR-type C2 69.9 3.3 7.1E-05 24.7 1.5 19 413-431 1-26 (28)
456 PF13848 Thioredoxin_6: Thiore 69.0 17 0.00036 31.8 6.7 64 71-161 94-160 (184)
457 PRK12496 hypothetical protein; 68.3 3.4 7.3E-05 36.3 1.9 19 410-428 125-151 (164)
458 KOG4301 Beta-dystrobrevin [Cyt 67.0 2.6 5.7E-05 40.6 1.0 70 359-430 202-274 (434)
459 cd02977 ArsC_family Arsenate R 66.0 14 0.00031 29.4 5.1 45 76-127 2-47 (105)
460 cd03060 GST_N_Omega_like GST_N 64.9 34 0.00073 24.7 6.6 18 242-259 3-20 (71)
461 cd02983 P5_C P5 family, C-term 64.3 24 0.00053 29.5 6.4 64 72-161 21-90 (130)
462 PF06053 DUF929: Domain of unk 62.7 10 0.00022 35.6 4.0 32 70-101 57-88 (249)
463 TIGR00595 priA primosomal prot 62.7 22 0.00048 37.2 7.0 47 278-333 129-175 (505)
464 cd03035 ArsC_Yffb Arsenate Red 62.0 18 0.00039 29.1 4.9 44 76-126 2-46 (105)
465 cd03031 GRX_GRX_like Glutaredo 61.9 17 0.00036 31.3 5.0 14 82-95 15-28 (147)
466 cd02978 KaiB_like KaiB-like fa 61.7 33 0.00071 25.6 5.8 63 73-161 2-64 (72)
467 KOG0541 Alkyl hydroperoxide re 59.0 35 0.00075 29.5 6.2 101 228-340 34-151 (171)
468 TIGR02605 CxxC_CxxC_SSSS putat 58.9 8.3 0.00018 26.4 2.2 11 409-419 2-12 (52)
469 PHA03075 glutaredoxin-like pro 58.8 9.8 0.00021 31.0 2.8 30 237-266 2-31 (123)
470 PF13778 DUF4174: Domain of un 58.7 96 0.0021 25.4 8.8 90 66-172 3-95 (118)
471 cd02978 KaiB_like KaiB-like fa 58.6 39 0.00085 25.2 5.7 63 238-332 2-64 (72)
472 PF13743 Thioredoxin_5: Thiore 58.5 15 0.00032 32.6 4.2 27 242-268 2-28 (176)
473 COG4545 Glutaredoxin-related p 58.4 33 0.00071 25.7 5.2 67 76-159 5-71 (85)
474 TIGR02443 conserved hypothetic 56.8 7.9 0.00017 27.4 1.7 26 399-424 10-43 (59)
475 PF07449 HyaE: Hydrogenase-1 e 56.8 25 0.00055 28.4 4.9 25 142-170 72-96 (107)
476 PLN03098 LPA1 LOW PSII ACCUMUL 56.7 1.5E+02 0.0033 30.4 11.4 106 224-340 285-428 (453)
477 PHA03075 glutaredoxin-like pro 56.6 13 0.00028 30.3 3.1 29 72-100 2-30 (123)
478 PF09526 DUF2387: Probable met 56.2 7.9 0.00017 28.8 1.7 27 399-425 9-43 (71)
479 smart00659 RPOLCX RNA polymera 56.0 6.4 0.00014 26.3 1.1 24 399-422 3-29 (44)
480 COG2331 Uncharacterized protei 55.6 6.2 0.00013 29.4 1.1 13 407-419 7-19 (82)
481 TIGR01617 arsC_related transcr 55.2 20 0.00043 29.3 4.2 32 76-116 2-33 (117)
482 cd03031 GRX_GRX_like Glutaredo 54.4 49 0.0011 28.4 6.6 14 247-260 15-28 (147)
483 COG1651 DsbG Protein-disulfide 54.3 26 0.00057 32.4 5.5 44 222-266 71-114 (244)
484 PRK01655 spxA transcriptional 53.8 22 0.00048 29.8 4.3 47 75-128 2-49 (131)
485 COG1651 DsbG Protein-disulfide 53.7 29 0.00063 32.2 5.6 45 58-102 71-115 (244)
486 PF13909 zf-H2C2_5: C2H2-type 53.6 7.3 0.00016 21.8 1.0 9 413-421 1-9 (24)
487 COG2761 FrnE Predicted dithiol 53.4 36 0.00077 31.4 5.9 41 73-114 6-46 (225)
488 PRK09301 circadian clock prote 53.2 49 0.0011 26.5 5.9 66 70-161 4-69 (103)
489 KOG2640 Thioredoxin [Function 53.0 5.5 0.00012 38.2 0.6 74 237-343 77-150 (319)
490 PF13240 zinc_ribbon_2: zinc-r 52.1 8.6 0.00019 21.7 1.1 22 401-422 2-23 (23)
491 cd03036 ArsC_like Arsenate Red 52.1 18 0.0004 29.2 3.5 20 76-95 2-21 (111)
492 PF07191 zinc-ribbons_6: zinc- 51.8 4 8.7E-05 30.1 -0.4 25 400-425 3-32 (70)
493 cd03032 ArsC_Spx Arsenate Redu 51.0 29 0.00063 28.2 4.5 45 75-128 2-49 (115)
494 PF06953 ArsD: Arsenical resis 50.9 60 0.0013 27.0 6.3 63 89-173 25-87 (123)
495 cd03073 PDI_b'_ERp72_ERp57 PDI 50.9 53 0.0012 26.6 6.0 49 87-161 34-86 (111)
496 KOG3170 Conserved phosducin-li 50.8 42 0.0009 30.3 5.6 66 236-339 111-176 (240)
497 TIGR02654 circ_KaiB circadian 50.7 61 0.0013 25.1 5.9 64 72-161 3-66 (87)
498 cd02977 ArsC_family Arsenate R 50.1 31 0.00067 27.4 4.5 20 241-260 2-21 (105)
499 PF09673 TrbC_Ftype: Type-F co 49.6 33 0.00073 27.9 4.7 64 91-161 11-80 (113)
500 KOG4236 Serine/threonine prote 49.6 1.7 3.7E-05 44.7 -3.5 37 397-433 277-316 (888)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=8e-24 Score=180.15 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=118.8
Q ss_pred CCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 013684 218 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 297 (438)
Q Consensus 218 ~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 297 (438)
||..+.+|+ .+++++++||+++|+||++||++|+.++|.+.++++++.++ +.+++|++|++|.+.+.+++++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 344588999 99999999999999999999999999999999999999864 4579999999999999999999
Q ss_pred hcCCCcccccCC-chhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCC
Q 013684 298 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 355 (438)
Q Consensus 298 ~~~~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~ 355 (438)
++++|..+|+.. +....+.+.|+|.++|+++|||++|+++.+++++++..+|..+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999998888765 5567899999999999999999999999999999999999999986
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=9e-24 Score=180.83 Aligned_cols=124 Identities=27% Similarity=0.537 Sum_probs=106.9
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCC--Cccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 305 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~ 305 (438)
.+++++++||+++|+|||+|||+|++++|.|.+++++++++. .-+...+++||+|+.|.+.+.+++|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~--~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEF--YVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhc--ccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 567889999999999999999999999999999999887530 000124799999999998888999999988 7777
Q ss_pred ccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 306 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 306 p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
|+..+....+.++|++.++|+++|||++|+|+.++++..|..+|..+|
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 887776779999999999999999999999999999999888876553
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.90 E-value=3.4e-23 Score=176.26 Aligned_cols=129 Identities=50% Similarity=0.942 Sum_probs=119.2
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
+.+.+|+.+++++++||+|+|+||++||++|+.++|.|.++++++++.+.+++|++|++|.+.+.+.+++++++|..+++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 35899999999999999999999999999999999999999999987645699999999999999999999999988888
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccC
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 187 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~ 187 (438)
.+.+....+++.|++.++|+++|||+ +|+++.+++.+++..++.++|||
T Consensus 83 ~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 83 SDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 66455578999999999999999999 99999999999999999999996
No 4
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=6.7e-23 Score=175.47 Aligned_cols=121 Identities=31% Similarity=0.579 Sum_probs=107.0
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcC-----CCCEEEEEEecCCCHHHHHHhHhcCC--ccccc
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVP 134 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~iv~vs~D~~~~~~~~~~~~~~--~~~~~ 134 (438)
+.+++++++||+|+|+|||+|||+|+.++|.|.+++++++++ +.+++||+||.|.+.+++++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 356789999999999999999999999999999999988763 23599999999999999999999887 88888
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCcc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFP 186 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p 186 (438)
+.+. ....+.+.|++.++|+++|||+ +|+++.+++.+.++++|..+|.
T Consensus 96 ~~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~~ 143 (146)
T cd03008 96 FEDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACFR 143 (146)
T ss_pred ccch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHHH
Confidence 7553 2368999999999999999999 9999999999999999876653
No 5
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=3.7e-22 Score=170.10 Aligned_cols=128 Identities=50% Similarity=0.952 Sum_probs=111.5
Q ss_pred CccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHh
Q 013684 219 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 298 (438)
Q Consensus 219 f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 298 (438)
|.+|.+ + .+++++++||+++|+||++||++|+.++|.|++++++++++ ..+++|++|++|.+.+.+++|++
T Consensus 2 ~~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 2 FLLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHh
Confidence 334555 5 89999999999999999999999999999999999999853 24799999999999899999999
Q ss_pred cC-CCcccccCC-chhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhh-ccccCCCC
Q 013684 299 TM-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 355 (438)
Q Consensus 299 ~~-~~~~~p~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~~~ 355 (438)
++ +|..+++.. +....+.+.|+|.++|+++|||++|+++++++...+.. +|..+||+
T Consensus 73 ~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 73 EMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 98 588888765 34567888999999999999999999999999888765 88888885
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.87 E-value=1e-21 Score=167.33 Aligned_cols=123 Identities=48% Similarity=0.892 Sum_probs=110.2
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC-CcccccCCChHH
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVPYSDLET 140 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~-~~~~~~~~d~~~ 140 (438)
+.+++++++||+++|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+++.++++++ +|..+++.+...
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 5899999999999999999999999999999999999998763459999999999999999999998 688888766444
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhh-hCCCCccC
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF 187 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~-~~~~a~p~ 187 (438)
...+.+.|++.++|+++|||+ +|+++.+++.+.+.. ++..+|||
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 478889999999999999999 999999999876666 99999986
No 7
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.84 E-value=1.5e-20 Score=162.99 Aligned_cols=117 Identities=29% Similarity=0.491 Sum_probs=106.6
Q ss_pred hhcCCCCCcc-C--CCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+|..+|+|++ + .+|+ .+++++++||+++|+||++ |||+|..++|.+.+++++++++ ++.+|+|+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 5889999998 6 9999 9999999999999999999 9999999999999999999876 7999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC---------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~ 340 (438)
.+.. +.+++++.+ +++|+..|....+.+.|++. ++|+++|||++|+|++.+
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 7766 888888866 88999999999999999998 999999999999999984
No 8
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=158.14 Aligned_cols=123 Identities=47% Similarity=0.872 Sum_probs=113.0
Q ss_pred cc-CCCCCceeecc-ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHH
Q 013684 220 LL-GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 297 (438)
Q Consensus 220 ~l-~~~g~~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 297 (438)
.+ ..+|. .+..+ .++||+|+++|.|.|||+|+.+.|.|.++|++++++ +..++||+||.|.+.+++..|+
T Consensus 16 ~l~~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y~ 87 (157)
T KOG2501|consen 16 RLRKQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEYM 87 (157)
T ss_pred eeeccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHHH
Confidence 44 77777 66665 789999999999999999999999999999999976 5689999999999999999999
Q ss_pred hc--CCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccc
Q 013684 298 GT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 350 (438)
Q Consensus 298 ~~--~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~ 350 (438)
.+ +.|+.+|+.++..+++.++|+|.++|++++++++|+++..+|+.++...|.
T Consensus 88 ~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 88 LEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred HhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 86 569999999999999999999999999999999999999999999988874
No 9
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.82 E-value=6.4e-20 Score=155.25 Aligned_cols=123 Identities=45% Similarity=0.788 Sum_probs=113.8
Q ss_pred ccCCCCCEEecc-ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhc--CCccc
Q 013684 56 STKEIGEEVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC--MPWLA 132 (438)
Q Consensus 56 ~~~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~--~~~~~ 132 (438)
+.+.+|..+..+ .++||+|.++|.|.|||+||.+.|.|.++|+++++++.+++||+||.|++.+++.+|+.. ++|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 568888888776 689999999999999999999999999999999999889999999999999999999995 67999
Q ss_pred ccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCC
Q 013684 133 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 182 (438)
Q Consensus 133 ~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~ 182 (438)
+||.+... +++.+.|.|.++|++.++++ +|+++..++...+...+.
T Consensus 97 iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 99977655 89999999999999999999 999999999999988874
No 10
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.82 E-value=2.6e-19 Score=159.49 Aligned_cols=149 Identities=12% Similarity=0.166 Sum_probs=123.9
Q ss_pred hcCCCCCcc-CCCCCceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
|..+|+|.+ +.+|+ .++++++ +||++||+||++|||.|...++.|.+++++|+++ ++++|+|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 467899999 99999 9999998 8999999999999999999999999999999865 79999999975
Q ss_pred -----CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHH
Q 013684 289 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL 363 (438)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L 363 (438)
+.+.+++++++++ +.+|+..|....+.+.|++..+|+++|||++|+|++....+.. .+. ........+|
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~--~~~---~~~~~~~~~~ 144 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDS--RPG---NDPPVTGRDL 144 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCC--ccc---ccccccHHHH
Confidence 5788999999887 6699999988999999999999999999999999987532210 000 0133445778
Q ss_pred HHHHHHHhccCCCc
Q 013684 364 EKQMEEEAKNLPRS 377 (438)
Q Consensus 364 ~~~i~~~~~~~~~~ 377 (438)
..+|+.++.+....
T Consensus 145 ~~~i~~~l~~~~~~ 158 (171)
T cd02969 145 RAALDALLAGKPVP 158 (171)
T ss_pred HHHHHHHHcCCCCC
Confidence 88888877766543
No 11
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.81 E-value=1e-19 Score=153.03 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=108.0
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|.||++ |||+|...++.|++++++|+++ ++++++|+.| +
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D 69 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence 5889999999 99999 9999999999999999999 9999999999999999999976 8999999997 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 339 (438)
.++.+++.+.++ +.+|+..|....+.+.|++. .+|++||||++|+|+++
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 568888888877 88999999999999999998 99999999999999974
No 12
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.81 E-value=2.5e-19 Score=148.51 Aligned_cols=110 Identities=22% Similarity=0.376 Sum_probs=96.4
Q ss_pred CCCcc-CCCCCceeeccccC-CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.++++++++.+ ++.++.++ +.+.++++
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68899 99999 99999997 99999999999999999999999999888753 47888776 66788999
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++++++...+|+..+ ..+.+.|++.++|++++||++|++++++
T Consensus 69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 9999988546787653 5688999999999999999999999874
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.80 E-value=3.5e-19 Score=160.60 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=98.9
Q ss_pred hhhhcCCCCCcc-CCCC--Cceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 210 NLLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g--~~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
..+|..+|+|++ +.+| + .++++.+ +||+++|+||++||++|++++|.|.++.+ + +++|++|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMN 104 (185)
T ss_pred hhcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEE
Confidence 346888999999 8874 6 6666665 79999999999999999999999987743 2 58999999
Q ss_pred cCCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++.+..++|+++++ +.+| +..|....+.+.||+.++|++|+||++|+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 105 YKDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 9888888999999887 5666 3567778899999999999999999999999885
No 14
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=2.8e-19 Score=143.21 Aligned_cols=93 Identities=45% Similarity=0.924 Sum_probs=84.5
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC--CCcccccCCchhH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 313 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~p~~~d~~~ 313 (438)
||+++|+||++||++|++++|.|.++++++++. .+++||+|++|.+.++++++++++ +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 799999999999999999999999999999832 379999999999999999999988 7999999999899
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.+.+.|+|.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999986
No 15
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=4.8e-19 Score=157.98 Aligned_cols=119 Identities=25% Similarity=0.484 Sum_probs=110.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.+.++++++.+. ++++++|++|.+
T Consensus 36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~ 105 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET 105 (173)
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence 36788999999 99999 99999999999999999999999999999999999999865 799999999999
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++.++++++ +.+|+..|....+.+.|++.++|+++++|++|+++...
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 999999999887 78898888889999999999999999999999999763
No 16
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.80 E-value=3.9e-19 Score=164.27 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=98.5
Q ss_pred hhhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-
Q 013684 210 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 287 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d- 287 (438)
...|..+|+|++ +.+|+ .+++++++||+++|+||++||++|..++|.|++++++|+++ +++||+|++|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 346788999999 99999 99999999999999999999999999999999999999876 8999999985
Q ss_pred ------CCHHHHHHHH-hcCCCcccccCC--chhH-HHHHhcC-------------cCceeeEEEECCCCcEEEcc
Q 013684 288 ------RDQTSFESYF-GTMPWLALPFGD--PTIK-ELTKYFD-------------VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ------~~~~~~~~~~-~~~~~~~~p~~~--d~~~-~l~~~~~-------------v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++.++++ ++++ +.||+.. |.++ .+...|+ +...|++||||++|+++.+.
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 3556788887 4555 7888864 3222 3333332 35579999999999999985
No 17
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.79 E-value=2.8e-19 Score=151.03 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=96.3
Q ss_pred CCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-----CCHHHHHHHHhc
Q 013684 225 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 299 (438)
Q Consensus 225 g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~ 299 (438)
|+ .+++++++||+++|+||++||++|.+++|.|++++++++++ ++.+++|+.+ .+.+.+++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 46 89999999999999999999999999999999999999865 7999999863 457789999998
Q ss_pred CCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 300 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 300 ~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++ +.+|+..|....+.+.|++.++|+++|||++|+++++.
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 88 78999999999999999999999999999999999874
No 18
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.79 E-value=6.5e-19 Score=160.20 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=97.3
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
.+..+|+|++ +.+|+ .+++++++||+|||+|||+|||+|..++|.|++++++|+++ +++||+|+++
T Consensus 15 ~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~~ 84 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQFL 84 (199)
T ss_pred cCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhcc
Confidence 4668899999 99999 99999999999999999999999999999999999999866 8999999974
Q ss_pred ----CCHHHHHHHHhcCCCcccccCCc------hhHH--------HHHhcCcCc----e---eeEEEECCCCcEEEccc
Q 013684 288 ----RDQTSFESYFGTMPWLALPFGDP------TIKE--------LTKYFDVQG----I---PCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~~p~~~d------~~~~--------l~~~~~v~~----~---P~~~lid~~G~i~~~~~ 341 (438)
.+.+++++|+++++ +.||+..| .... +...|++.+ + |++||||++|+++.+..
T Consensus 85 ~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 85 NQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred CCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 35678999999887 78887543 1111 223354432 2 37999999999998753
No 19
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.79 E-value=6.6e-19 Score=148.93 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=98.5
Q ss_pred CCCCCcc-CCCC--CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH
Q 013684 215 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 291 (438)
Q Consensus 215 ~~~~f~l-~~~g--~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~ 291 (438)
.+|+|++ +.+| . .+++++++||+++|+||++|||+|++++|.+.++.+++ +++||+|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 8888 7 89999999999999999999999999999999886553 38899999988889
Q ss_pred HHHHHHhcCCCccc-ccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 292 SFESYFGTMPWLAL-PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~~~~~~~~-p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++++++++.+ +.+ ++..|....+++.|++.++|+++++|++|+++.+.
T Consensus 69 ~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 69 NALAWLARHG-NPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred HHHHHHHhcC-CCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 9999998877 344 35567778999999999999999999999999874
No 20
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.79 E-value=9.1e-19 Score=178.06 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=103.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC---
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 287 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--- 287 (438)
.+..+|+|++ |.+|+ .+.++ +||+|+|+|||+||++|+.++|.|.+++++++.+ +++||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 4567899999 99999 88887 8999999999999999999999999999998754 7999999873
Q ss_pred --CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 288 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+.++++++++.+++.++|+..|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~ 156 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV 156 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE
Confidence 34567888888888778899999999999999999999999999999999873
No 21
>PLN02412 probable glutathione peroxidase
Probab=99.78 E-value=8e-19 Score=155.48 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred cCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC----
Q 013684 214 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 288 (438)
Q Consensus 214 ~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---- 288 (438)
..+|+|++ +.+|+ .+++++++||+++|+||++|||+|..++|.|++++++|+++ ++.|++|++|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 46899999 99999 99999999999999999999999999999999999999976 89999999862
Q ss_pred ---CHHHHHHH-HhcCCCcccccCCc--hh-HHHHHhcC-------------cCceeeEEEECCCCcEEEcc
Q 013684 289 ---DQTSFESY-FGTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ---~~~~~~~~-~~~~~~~~~p~~~d--~~-~~l~~~~~-------------v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+++.++ .++++ +.||+..+ .+ ......|+ +...|++||||++|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 34455555 46666 88998652 22 23344332 66789999999999999985
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.78 E-value=2.3e-18 Score=153.62 Aligned_cols=118 Identities=22% Similarity=0.301 Sum_probs=101.0
Q ss_pred hhcCCCCCcc-CCCC----CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe
Q 013684 212 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 285 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g----~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is 285 (438)
+|..+|+|.+ +.+| + .+++++++||+++|+|| ++||++|...++.|++++++|.+. ++.|++|+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4788999999 7777 7 89999999999999999 899999999999999999999865 89999999
Q ss_pred cCCCHHHHHHHHhcC------CCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 286 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 286 ~d~~~~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
+|.. +..+.+.+.. .-+.||+..|....+.+.||+. .+|+++|||++|+|++.+
T Consensus 71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 9854 3333444332 2367899999999999999996 688999999999999985
No 23
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=9.6e-18 Score=173.53 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=59.7
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..||.|+|+|||+||++|+.+.|.+.++++.+++. ..+.++.|+++.+ .
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~ 421 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------E 421 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------c
Confidence 35799999999999999999999999999988753 2466777776644 3
Q ss_pred HHHHhcCcCceeeEEEECCCCcEE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..++.|+++++||++++++++++.
T Consensus 422 ~~~~~~~v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 422 TPLEEFSWSAFPTILFVKAGERTP 445 (477)
T ss_pred cchhcCCCcccCeEEEEECCCcce
Confidence 457889999999999998777653
No 24
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.78 E-value=3.7e-18 Score=154.36 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=104.5
Q ss_pred hhhcCCCCCcc-CCCCCceeecc--ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+|+ .++++ +.+||+++|+||++|||+|+.+.|.+.++++++ ++.+++|+.|
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~ 113 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG 113 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence 47889999999 99999 99994 579999999999999999999999999887543 3678999854
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHH
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 367 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i 367 (438)
+.++.++|+++++ +.++... ...++.+.|++.++|++++||++|++++++. ..+.+.++++.+++
T Consensus 114 -~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l 178 (189)
T TIGR02661 114 -TPAEHRRFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEAD 178 (189)
T ss_pred -CHHHHHHHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHH
Confidence 6778899999887 4444322 3578899999999999999999999998631 12455666666655
Q ss_pred H
Q 013684 368 E 368 (438)
Q Consensus 368 ~ 368 (438)
+
T Consensus 179 ~ 179 (189)
T TIGR02661 179 R 179 (189)
T ss_pred H
Confidence 4
No 25
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.77 E-value=7.1e-19 Score=153.56 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=95.4
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC------
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 288 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~------ 288 (438)
.|+|++ +.+|+ .+++++++||+|+|+|||+||| |..++|.|++++++|+++ ++.||+|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 588999 99999 9999999999999999999999 999999999999999865 79999999752
Q ss_pred -CHHHHHHHHhc-CCCcccccCCch--hHH-HHHhcC--cCcee-----------eEEEECCCCcEEEccc
Q 013684 289 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 289 -~~~~~~~~~~~-~~~~~~p~~~d~--~~~-l~~~~~--v~~~P-----------~~~lid~~G~i~~~~~ 341 (438)
+.+.+++|+++ .+ ++||+..|. ... ....|+ +.++| ++||||++|+++++..
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 35779999987 56 788987642 222 455565 46677 7999999999999853
No 26
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.77 E-value=3.5e-18 Score=148.58 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=104.2
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCC-CEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||++|...+|.|++++++++++ ++++|+|+.|
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d- 71 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD- 71 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence 5788999999 99999 999999999 99998888 899999999999999999999865 7999999988
Q ss_pred CHHHHHHHHhcCCCcccccCCchh--HHHHHhcCcC----ce--eeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQ----GI--PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~--~~l~~~~~v~----~~--P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.++++ +.+|+..|.. ..+.+.||+. ++ |+++|||++|++++..
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 4567889998887 7889988876 8999999997 33 3899999999999984
No 27
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.77 E-value=3.2e-18 Score=149.80 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=105.5
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++ ||+.|..+++.|.+++++++++ +++||+|+.| +
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~ 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence 5888999999 99999 9999999999999999986 6889999999999999999876 7999999998 5
Q ss_pred HHHHHHHHhcCCCcccccCCchhHHHHHhcCcCce------------eeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~~ 340 (438)
.+++++|+++++ +.+|++.|....+.+.||+... |+++|||++|+|+...
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 688899999887 7899988888999999998654 7889999999999874
No 28
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.77 E-value=4e-18 Score=152.08 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=97.9
Q ss_pred hhhhcCCCCCcc-CCCCC-ceeecccc-CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 210 NLLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~~g~-~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..+|..+|+|++ +.+|+ ..++++++ +||+++|+||++||++|+.+.|.++++++ + ++++++|+.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~ 100 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDY 100 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 357889999999 88886 13444564 68999999999999999999999877653 2 589999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+.+.++.++|+++++ +.+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus 101 ~~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 101 KDQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred CCChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 877788888998887 5666 4567788999999999999999999999999874
No 29
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.76 E-value=3.3e-18 Score=151.61 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=102.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| ||+|..++|.|+++++++. +++|++||.|.
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D~- 86 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISADL- 86 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCCC-
Confidence 5889999999 99999 99999999999999999999 9999999999999988873 58999999984
Q ss_pred HHHHHHHHhcCCCcccccCCc-hhHHHHHhcCcCcee---------eEEEECCCCcEEEccc
Q 013684 290 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~ 341 (438)
....++|.++++...+++..| ....+++.||+...| +++|||++|+|++.+.
T Consensus 87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 466788998887334788888 566999999998877 9999999999999863
No 30
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.76 E-value=4.6e-18 Score=136.14 Aligned_cols=93 Identities=39% Similarity=0.755 Sum_probs=82.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC--CcccccCCChHHHHHHhhhc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~ 148 (438)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|+.|.+.+++++++++. +|..+++.+.. ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence 79999999999999999999999999999995 3569999999999999999999987 89999985544 57999999
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
++.++|+++|+|+ +|+|
T Consensus 79 ~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp T-TSSSEEEEEET---TSBE
T ss_pred CCCcCCEEEEECC---CCCC
Confidence 9999999999999 9975
No 31
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.76 E-value=6e-18 Score=145.42 Aligned_cols=114 Identities=26% Similarity=0.333 Sum_probs=104.7
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 292 (438)
.+|+|.+ +.+|+ .+++++++||+++|+|| +.|||+|..+++.|.++++++.++ +++||+|+.| +.+.
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence 5799999 99999 99999999999999999 589999999999999999999865 7999999998 5578
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhcCcCce---------eeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~ 340 (438)
+++|+++++ +.+|+..|....+.+.||+... |+++|||++|++++..
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 899999887 6899999988999999999988 9999999999999884
No 32
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.75 E-value=1.5e-18 Score=150.36 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=101.1
Q ss_pred hhccchhHHHHHhhcccccC--CCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 39 IMSLSQWYVQQLRRRMTSTK--EIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~--~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+|+.+|+|+ +++ .+|+.+++++++||+++|+||++ |||+|+.++|.|.++++.+++.+ +.+++|+.+
T Consensus 2 ~G~~~P~~~--------~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFS--------LKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSD 71 (146)
T ss_dssp TTSB--CCE--------EEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEES
T ss_pred CCCCCCCeE--------EEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEeccc
Confidence 689999999 855 99999999999999999999999 99999999999999999998876 999999999
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC---------ccceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.. ..++.++.+.......|.+ ..+.+.|++. .+|+++|||+ +|+|++...
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~ 132 (146)
T PF08534_consen 72 DDPP-VREFLKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV 132 (146)
T ss_dssp SSHH-HHHHHHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred CCHH-HHHHHHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence 8877 8888887553322233433 7899999988 9999999999 999998865
No 33
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.75 E-value=4.9e-18 Score=146.69 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=102.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCC-ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|..++|.|.+++++++ ++.||+|++|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 5788999999 99999 99999999999999999998 6999999999999998873 58999999985
Q ss_pred HHHHHHHHhcCCCcccccCCchh-HHHHHhcCcCc------eeeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~~-~~l~~~~~v~~------~P~~~lid~~G~i~~~~ 340 (438)
.+..++|.++++...+|+..|.. ..+.+.||+.. .|++||||++|+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 56778888888755788888875 89999999963 79999999999999885
No 34
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.75 E-value=4.6e-18 Score=140.85 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=91.4
Q ss_pred ccCCCCCEEeccccC-CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~ 134 (438)
+.+.+|+.+++++++ ||+++|+||++||++|+.++|.|.++++++++ ++.++.++ |.+.+++.++++++++..+|
T Consensus 5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCCCCCc
Confidence 889999999999997 99999999999999999999999999888743 37788775 77888899999988764444
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... + ..+.+.|++..+|++++||+ +|++++++.
T Consensus 81 ~~~-~--~~~~~~~~~~~~P~~~vid~---~G~v~~~~~ 113 (114)
T cd02967 81 YVL-S--AELGMAYQVSKLPYAVLLDE---AGVIAAKGL 113 (114)
T ss_pred EEe-c--HHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence 322 1 56889999999999999999 999988753
No 35
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.75 E-value=9.8e-18 Score=150.44 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=118.8
Q ss_pred hhhcCCCCCcc-C-CCCC-ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~-~~g~-~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|+. . .+|. ..+++++++||+++|+|| +.|||.|..+++.|.+++++|.+. +++|++||.
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS~ 73 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVST 73 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEeC
Confidence 47899999997 2 2333 177888999999999999 999999999999999999999876 899999999
Q ss_pred CCCHHHHHHHHhcC---CCcccccCCchhHHHHHhcCc----Cce--eeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 287 DRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 287 d~~~~~~~~~~~~~---~~~~~p~~~d~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
|. ....++|.+.. ..+.||++.|.+..+++.||+ .++ |++||||++|+|++...... . ..
T Consensus 74 D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~--~--------~~ 142 (187)
T PRK10382 74 DT-HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--G--------IG 142 (187)
T ss_pred CC-HHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC--C--------CC
Confidence 84 45566666432 347899999999999999999 356 99999999999998853221 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 358 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
+.++++.+.++.+ ..+..|.+..+|..|..|..
T Consensus 143 ~~~~eil~~l~al-------q~~~~~~g~~~p~~w~~~~~ 175 (187)
T PRK10382 143 RDASDLLRKIKAA-------QYVASHPGEVCPAKWKEGEA 175 (187)
T ss_pred CCHHHHHHHHHhh-------hhHhhcCCeEeCCCCCcCCc
Confidence 2345555555321 11223335777877766544
No 36
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.74 E-value=5.4e-17 Score=149.88 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=112.2
Q ss_pred CCCEEEEEEec---cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++...++.|++ +||++|+.+.|.+.++.+++. .+++..+++|.+.. .++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCccc----------------------HHHHH
Confidence 44455656776 999999999999999999872 26666777764433 78999
Q ss_pred hcCcCccceEEEecCCCCCCCccc-ccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccCCCC
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATL-HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 225 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~-~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~~~g 225 (438)
.|+|.++||+++++ +|+.+. +.. | .+...+....+....... + +.-.++...
T Consensus 72 ~~~V~~~Pt~~~f~----~g~~~~~~~~-------G---~~~~~~l~~~i~~~~~~~----------~---~~~~L~~~~ 124 (215)
T TIGR02187 72 KYGVERVPTTIILE----EGKDGGIRYT-------G---IPAGYEFAALIEDIVRVS----------Q---GEPGLSEKT 124 (215)
T ss_pred HcCCCccCEEEEEe----CCeeeEEEEe-------e---cCCHHHHHHHHHHHHHhc----------C---CCCCCCHHH
Confidence 99999999999998 665542 221 1 111111111121111100 0 000111111
Q ss_pred CceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccc
Q 013684 226 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL 305 (438)
Q Consensus 226 ~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 305 (438)
. -.+.+..+.++++.||++||++|+.+.+.+.++..+. +++.+..|+.+..
T Consensus 125 ~--~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~---------------- 175 (215)
T TIGR02187 125 V--ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN---------------- 175 (215)
T ss_pred H--HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC----------------
Confidence 1 1123344556777799999999999998887776553 2466666666644
Q ss_pred ccCCchhHHHHHhcCcCceeeEEEECCCCc
Q 013684 306 PFGDPTIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 306 p~~~d~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
.++.+.|+|.++||+++. .+|+
T Consensus 176 -------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 -------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred -------HHHHHHhCCccCCEEEEe-cCCE
Confidence 678899999999999887 5665
No 37
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.74 E-value=1.7e-17 Score=149.80 Aligned_cols=160 Identities=19% Similarity=0.253 Sum_probs=117.4
Q ss_pred hhhcCCCCCcc-C-CCCC-ceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 211 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 211 ~~g~~~~~f~l-~-~~g~-~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
.+|..+|+|++ + .+|+ ..+++++++||+++|+|| ++||++|..+++.|++++++|+++ +++|++||+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 57899999999 7 5665 147778999999999999 999999999999999999999865 799999999
Q ss_pred CCCHHHHHHHHhc---CCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccCCCCCH
Q 013684 287 DRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE 357 (438)
Q Consensus 287 d~~~~~~~~~~~~---~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~ 357 (438)
|.. ...++|.+. ..-+.||+..|....+++.||+. ..|++||||++|+|++...... . ..
T Consensus 74 D~~-~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~-------~---~~ 142 (187)
T TIGR03137 74 DTH-FVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDN-------G---IG 142 (187)
T ss_pred CCH-HHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCC-------C---CC
Confidence 853 444444432 22367889999899999999996 4699999999999998752111 1 11
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 358 AKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 358 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
+..+++.+.|+.+ .+...+++..+|..|..|..
T Consensus 143 ~~~~~ll~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 175 (187)
T TIGR03137 143 RDASELLRKIKAA-------QYVAAHPGEVCPAKWKEGAE 175 (187)
T ss_pred CCHHHHHHHHHHh-------hhHHhcCCeeeCCCCCcCCc
Confidence 2456666655421 12222334666766666554
No 38
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.74 E-value=2.1e-17 Score=148.66 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=93.7
Q ss_pred hcCCCCCcc-CCCCCceeeccccCCCEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--
Q 013684 213 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 288 (438)
Q Consensus 213 g~~~~~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-- 288 (438)
+...|+|++ +.+|+ .+++++++||++ ++.|||+|||+|..++|.|++++++|+++ ++.||+|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 456899999 99999 999999999964 56679999999999999999999999876 79999999752
Q ss_pred -----CHHHHHHHHh-cCCCcccccCCc--hh----HHHHH------------hcCcCceee---EEEECCCCcEEEcc
Q 013684 289 -----DQTSFESYFG-TMPWLALPFGDP--TI----KELTK------------YFDVQGIPC---LVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 -----~~~~~~~~~~-~~~~~~~p~~~d--~~----~~l~~------------~~~v~~~P~---~~lid~~G~i~~~~ 340 (438)
+.++.++|+. +++ ++||+..| .+ ..+.. .+++.++|+ +||||++|+|+.+.
T Consensus 87 ~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred ccCCCCHHHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 3467888875 555 78888744 12 22321 246779995 69999999999985
No 39
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.74 E-value=1.5e-17 Score=145.39 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------C
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R 288 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d-------~ 288 (438)
-+|++ +.+|+ .+++++++||+++|+|||+|||+|+..+|.|.+++++|+++ ++.|++|+++ .
T Consensus 3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d 72 (153)
T TIGR02540 3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD 72 (153)
T ss_pred ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence 46888 99999 99999999999999999999999999999999999999876 8999999962 3
Q ss_pred CHHHHHHHHhc-CCCcccccCCc-----hhHHHHHhcCc---Cceee----EEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGT-MPWLALPFGDP-----TIKELTKYFDV---QGIPC----LVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~p~~~d-----~~~~l~~~~~v---~~~P~----~~lid~~G~i~~~~ 340 (438)
+.+.+++|+++ ++ +.||+..| ......-.|.+ .++|+ +||||++|+++.+.
T Consensus 73 ~~~~~~~f~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 73 SSKEIESFARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred CHHHHHHHHHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence 46778999975 56 78888654 11122222332 36898 99999999999885
No 40
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.4e-17 Score=140.19 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=108.6
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|||+| +.+|+ .++|++++||+|+|+|| ..++|.|..++-.+++.+.+|... +.+|++||.|
T Consensus 5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D- 73 (157)
T COG1225 5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD- 73 (157)
T ss_pred CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence 36899999999 99999 99999999999999999 579999999999999999999976 8999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCchhHHHHHhcCcC------------ceeeEEEECCCCcEEEcc
Q 013684 289 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 340 (438)
+....++|.++++ ++||.+.|...+++++|||- ..+++||||++|+|++..
T Consensus 74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 6688999999998 88999999999999999983 457999999999999875
No 41
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.73 E-value=5.9e-18 Score=142.19 Aligned_cols=117 Identities=23% Similarity=0.431 Sum_probs=100.1
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+|+++|+|+ +++.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.|.
T Consensus 1 vG~~~P~f~--------l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~- 69 (124)
T PF00578_consen 1 VGDKAPDFT--------LTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDD- 69 (124)
T ss_dssp TTSBGGCEE--------EETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSS-
T ss_pred CcCCCCCcE--------eECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccc-
Confidence 689999999 99999999999999999999999999 99999999999999999999876 9999999974
Q ss_pred HHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccc
Q 013684 118 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++.+++.+..++....+.|.+ ..+.+.|++. .+|+++|||+ +|+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEEE
T ss_pred ccchhhhhhhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEeC
Confidence 4577778775543222222433 7899999998 9999999999 9998753
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.73 E-value=3.4e-17 Score=134.61 Aligned_cols=111 Identities=29% Similarity=0.513 Sum_probs=102.0
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC-HHHHHH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 295 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~-~~~~~~ 295 (438)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence 4677 89999 99999999999999999999999999999999999998743 799999999987 899999
Q ss_pred HHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 296 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 296 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++++++ ..+++..|....+.+.|++.++|+++|+|++|+++++
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 999988 7888888888899999999999999999999999976
No 43
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.72 E-value=1.3e-17 Score=150.34 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=95.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCC--CEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIG--EEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g--~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
..+|.++|+|+ +.+.+| +.++++++ +||+++|+||++||++|++++|.|.++++ .+ ++|++|+
T Consensus 39 ~~~g~~~p~f~--------l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFR--------LESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMN 104 (185)
T ss_pred hhcCCCCCCcC--------CccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEE
Confidence 34577788888 888884 66777765 79999999999999999999999988753 33 8999999
Q ss_pred cCCCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|++.++..+|+++++....+ ..|.. ..+...|++.++|++++||+ +|+++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~~ 160 (185)
T PRK15412 105 YKDDRQKAISWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRHA 160 (185)
T ss_pred CCCCHHHHHHHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEEe
Confidence 988888899999876543221 22433 67788999999999999999 999987765
No 44
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.72 E-value=3.9e-17 Score=149.08 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEE-EEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|..+|+|++ +..| .+++++++||+++| +||++|||+|..+++.|.+++++|+++ +++|++||+|..
T Consensus 4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~ 72 (202)
T PRK13190 4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI 72 (202)
T ss_pred CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence 6889999999 6665 58999999997766 688999999999999999999999876 899999999954
Q ss_pred HH--HHH-HHHhcCC-CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 290 QT--SFE-SYFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~--~~~-~~~~~~~-~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
.. +|. .+.++.+ .+.||+..|.+..+++.||+. .+|++||||++|+|++..
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 32 333 2333444 368999999999999999994 689999999999999864
No 45
>PRK15000 peroxidase; Provisional
Probab=99.71 E-value=8.7e-17 Score=146.27 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=114.7
Q ss_pred hhhcCCCCCcc-CC--CCCce---eecccc-CCCEEEEEEecC-CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 013684 211 LLTNHDRGYLL-GH--PPDEK---VPVSSL-VGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 282 (438)
Q Consensus 211 ~~g~~~~~f~l-~~--~g~~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 282 (438)
++|..+|+|++ +. +|+ . ++++++ +||+++|+||+. ||++|..+++.|.+++++|+++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47899999999 64 344 3 344554 799999999985 9999999999999999999876 89999
Q ss_pred EEecCCCH--HHHHH-HHhcCC--CcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhcccc
Q 013684 283 FVSTDRDQ--TSFES-YFGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN 351 (438)
Q Consensus 283 ~is~d~~~--~~~~~-~~~~~~--~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~ 351 (438)
+||+|... ..|.+ +.+..+ -+.||+..|....+++.||+. ++|++||||++|+|++... |..
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~-------~~~ 145 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV-------NDL 145 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe-------cCC
Confidence 99999542 23333 223333 268999999999999999997 7999999999999998742 211
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCC
Q 013684 352 AYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGG 397 (438)
Q Consensus 352 ~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (438)
. ..+.++++.+.++.+. .+..| +..+|..|..|..
T Consensus 146 ~---~gr~~~eilr~l~al~-------~~~~~-~~~~p~~w~~g~~ 180 (200)
T PRK15000 146 P---LGRNIDEMLRMVDALQ-------FHEEH-GDVCPAQWEKGKE 180 (200)
T ss_pred C---CCCCHHHHHHHHHHhh-------hHHhc-CCCcCCCCCCCCc
Confidence 1 1123555555554311 12222 4677877776654
No 46
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.71 E-value=2.1e-17 Score=139.77 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred cchhHHHHHhhcccccCCCC--CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIG--EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 119 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~ 119 (438)
++|+|+ +.+.+| +.+++++++||+++|+||++||++|+.++|.|+++.+++ ++++++|+.+.+.+
T Consensus 2 ~~p~f~--------~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFS--------LPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcc--------cccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHH
Confidence 468888 889998 889999999999999999999999999999999987764 39999999998999
Q ss_pred HHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 120 AFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++++++.......+. .|.. ..+++.|++.++|++++||+ +|+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~v~~~P~~~~ld~---~G~v~~~~~ 118 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPD--GRVGIDLGVYGVPETFLIDG---DGIIRYKHV 118 (127)
T ss_pred HHHHHHHhcCCCCceEEECCc--chHHHhcCCCCCCeEEEECC---CceEEEEEe
Confidence 9999998765432221 1333 68999999999999999999 999886643
No 47
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.71 E-value=3.1e-17 Score=138.50 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec-----CCCHHHHHHhHhcCCcccccC
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-----DEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~-----D~~~~~~~~~~~~~~~~~~~~ 135 (438)
|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+ +.+++|+. +.+.++++++++++++....+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 56799999999999999999999999999999999999998865 99999976 356788899998776543223
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.+ ..+.+.|++.++|+++|||+ +|++++...
T Consensus 91 ~D~~--~~~~~~~~v~~~P~~~vid~---~G~v~~~~~ 123 (126)
T cd03012 91 NDND--YATWRAYGNQYWPALYLIDP---TGNVRHVHF 123 (126)
T ss_pred ECCc--hHHHHHhCCCcCCeEEEECC---CCcEEEEEe
Confidence 3443 78899999999999999999 999987754
No 48
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.71 E-value=8.4e-17 Score=150.64 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=118.1
Q ss_pred hhhhcCCCCCcc-C-CCCC-ceeecccc-CCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 210 NLLTNHDRGYLL-G-HPPD-EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 210 ~~~g~~~~~f~l-~-~~g~-~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.++|..+|+|++ + .+|+ +.++++++ +||+++|+|| +.|||+|..+++.|.+++++|+++ +++|++|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigI 138 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGV 138 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 368999999998 5 4553 16899998 8888888888 899999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHh----cC--CCcccccCCchhHHHHHhcCcC-----ceeeEEEECCCCcEEEcccchhhhhccccCC
Q 013684 285 STDRDQTSFESYFG----TM--PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY 353 (438)
Q Consensus 285 s~d~~~~~~~~~~~----~~--~~~~~p~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~ 353 (438)
|+|. ....+++.+ +. ..+.||++.|.+..+++.||+. ..|++||||++|+|++....+. .
T Consensus 139 S~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~--~------ 209 (261)
T PTZ00137 139 SVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL--G------ 209 (261)
T ss_pred ECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC--C------
Confidence 9986 333333332 21 2378999999999999999995 5899999999999998753221 1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCCC
Q 013684 354 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 398 (438)
Q Consensus 354 ~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (438)
..+.++++...|+.+- . ..+.++.+|..|..|..+
T Consensus 210 --~gr~v~eiLr~l~alq-------~-~~~~g~~cPanW~~g~~~ 244 (261)
T PTZ00137 210 --LGRSVDETLRLFDAVQ-------F-AEKTGNVCPVNWKQGDQA 244 (261)
T ss_pred --CCCCHHHHHHHHHHhc-------h-hhhcCCCcCCCCCcCCce
Confidence 1123555555554211 1 112257778777766553
No 49
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.70 E-value=1.3e-17 Score=145.60 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------- 115 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D------- 115 (438)
+|+|+ +.+.+|+.+++++++||+|+|+|||+||| |+.++|.|+++++++++.| +++++|+.|
T Consensus 2 ~~~f~--------l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFS--------VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeE--------EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCC
Confidence 57777 89999999999999999999999999999 9999999999999998776 999999875
Q ss_pred CCHHHHHHhHhc-CCcccccCCChHHHHH-HhhhcC--cCccc-----------eEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRAC-MPWLAVPYSDLETKKA-LNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-l~~~~~--v~~~P-----------~~~lvd~~~~~G~v~~~~~ 173 (438)
++.+.+++|+++ .+.....+.+.+.... ....|+ +..+| +++|||+ +|+++.+..
T Consensus 71 ~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~~ 140 (152)
T cd00340 71 GSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRFA 140 (152)
T ss_pred CCHHHHHHHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEEC
Confidence 346778899875 5533222222111111 334444 35566 8999999 999998765
No 50
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.70 E-value=1.1e-16 Score=142.62 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=103.7
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.+.+.|.++++++++.+ +.+++|+.|.+.
T Consensus 37 ~g~~~p~~~--------~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~ 106 (173)
T PRK03147 37 VGKEAPNFV--------LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETE 106 (173)
T ss_pred CCCCCCCcE--------eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCH
Confidence 577888898 8999999999999999999999999999999999999999999998865 999999999999
Q ss_pred HHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 119 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.++.++++.....+.+.. ..+.+.|++..+|++++||+ +|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~g~i~~~~ 155 (173)
T PRK03147 107 LAVKNFVNRYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDK---DGKVVKVI 155 (173)
T ss_pred HHHHHHHHHhCCCceEEECCc--chHHHHcCCCCcCeEEEECC---CCcEEEEE
Confidence 999999987764322222333 78899999999999999999 99988653
No 51
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.70 E-value=2e-16 Score=143.89 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=94.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-- 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-- 115 (438)
..|..+|+|+ +.+.+|+.+++++++||+|+|+|||+|||+|+.++|.|++++++++++| ++||+|+.|
T Consensus 14 ~~~~~~pdf~--------l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYT--------VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceE--------EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhc
Confidence 4577899999 8999999999999999999999999999999999999999999999876 999999974
Q ss_pred -----CCHHHHHHhHhcCCcccccCCC----h-H-------HHHHHhhhcCcC----cc---ceEEEecCCCCCCCcccc
Q 013684 116 -----EDLNAFNNYRACMPWLAVPYSD----L-E-------TKKALNRKFDIE----GI---PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~d----~-~-------~~~~l~~~~~v~----~~---P~~~lvd~~~~~G~v~~~ 171 (438)
++.+++++++++.+.....+.+ . . ....+...|++. .+ |+++|||+ +|+++.+
T Consensus 84 ~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~ 160 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAY 160 (199)
T ss_pred cCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEE
Confidence 4677899999876543222211 0 0 001222334432 22 37999999 9999976
Q ss_pred cc
Q 013684 172 DG 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 161 ~~ 162 (199)
T PTZ00056 161 FS 162 (199)
T ss_pred eC
Confidence 54
No 52
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.70 E-value=1.3e-16 Score=137.11 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=102.7
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
+|+|++ +.+|+ .+++++++||+++|+|| +.||++|...+|.|++++++++.. ++.+++|+.| +.+..
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHHH
Confidence 689999 99999 99999999999999999 789999999999999999999754 7999999997 56778
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCcee---------eEEEECCCCcEEEcc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQ 340 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 340 (438)
++|.++++-..++++.|....+.+.||+...| +++|||++|+|++++
T Consensus 71 ~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred HHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 89999884478899999889999999988665 899999999999985
No 53
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.69 E-value=1.5e-16 Score=146.16 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=103.4
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|.+ +.+|+ .+.+++++||++ |++||+.|||+|..+++.|.+++++|+++ +++||+||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 57899999999 89998 888899999975 67888999999999999999999999876 89999999996
Q ss_pred C--HHHHHHHHhcC--CCcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 289 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
. ...|.++++++ .-+.||+..|.+.++++.||+. ..|++||||++|+|+...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 4 34566666643 1378999999999999999983 689999999999999874
No 54
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.69 E-value=1.2e-16 Score=134.25 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=95.1
Q ss_pred CCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-CHHHHH
Q 013684 217 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE 294 (438)
Q Consensus 217 ~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-~~~~~~ 294 (438)
|+|.+ +.+|+ .++++..+||+++|+||++||++|+.++|.|.+++++ +++++|++|. +.++++
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 68899 99999 9999999999999999999999999999999988765 3578888875 478899
Q ss_pred HHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 295 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 295 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.++++ +.+|+..|.+.++++.|++.++|+++|+|++| ++++
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 9999888 78998888888999999999999999999999 7765
No 55
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.69 E-value=1e-16 Score=144.90 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=96.6
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEecc--ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+|+.+|+|+ +++.+|+.++++ +.+||+++|+||++|||+|+.++|.+.+++++. ++.+++|+.
T Consensus 46 ~~vG~~aP~f~--------l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~ 112 (189)
T TIGR02661 46 PDVGDAAPIFN--------LPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISD 112 (189)
T ss_pred CCCCCcCCCcE--------ecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 35789999999 999999999994 579999999999999999999999999987653 266888884
Q ss_pred CCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 115 DEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 115 D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++.++..+|.++++....++. . ..++.+.|++..+|++++||+ +|++++++
T Consensus 113 -~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~g 163 (189)
T TIGR02661 113 -GTPAEHRRFLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAKG 163 (189)
T ss_pred -CCHHHHHHHHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEcc
Confidence 567888999998875433332 2 268889999999999999999 99998753
No 56
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.69 E-value=2.1e-16 Score=137.13 Aligned_cols=113 Identities=18% Similarity=0.352 Sum_probs=97.0
Q ss_pred CCCCcc-CCCCCceeeccccC-CCE-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHH
Q 013684 216 DRGYLL-GHPPDEKVPVSSLV-GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 292 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~-gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~ 292 (438)
+|+|++ +.+|+ .++++++. +++ ++++||++|||+|+.++|.|.++++++++. ++++|+|+.|.. +.
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-EK 70 (149)
T ss_pred CCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-HH
Confidence 689999 99999 99999875 454 555556999999999999999999999865 799999999854 45
Q ss_pred HHHHHhcCCCcccccCCchhHHHHHhcCcC-----------------------------ceeeEEEECCCCcEEEcc
Q 013684 293 FESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 293 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~ 340 (438)
..++.++.+ +++|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 71 ~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 71 LEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 557777766 78999999999999999994 799999999999999874
No 57
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.1e-16 Score=154.78 Aligned_cols=183 Identities=23% Similarity=0.365 Sum_probs=120.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|.||++||++|+...|.+.++...+++. +.+ ..+|.+.. ..+++.|+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~--~~vd~~~~----------------------~~~~~~y~ 98 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKI--GAVDCDEH----------------------KDLCEKYG 98 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEE--EEeCchhh----------------------HHHHHhcC
Confidence 4679999999999999999999999999998652 333 34454433 89999999
Q ss_pred cCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCC--CccCCCCCc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLGHPPDE 227 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~--f~l~~~g~~ 227 (438)
|.++||+.++.+ ...++.... +...+.+....... +...+....+. +.++..+-
T Consensus 99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~- 154 (383)
T KOG0191|consen 99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLIKE--------LEPSVKKLVEGEVFELTKDNF- 154 (383)
T ss_pred CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHHHh--------hccccccccCCceEEccccch-
Confidence 999999999997 422222111 11111221111111 11111111111 11111111
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
. ..-......+++.||++||++|+.+.|.+.++...++.. ..+.+..++++.
T Consensus 155 ~-~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~~------------------- 206 (383)
T KOG0191|consen 155 D-ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDATV------------------- 206 (383)
T ss_pred h-hhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccch-------------------
Confidence 0 001122457999999999999999999999999988742 367777777662
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~ 335 (438)
...++..++|.++|++.++-++.+
T Consensus 207 ----~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 207 ----HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ----HHHHhhhhcccCCceEEEecCCCc
Confidence 267889999999999999966556
No 58
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.69 E-value=3.2e-16 Score=142.88 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred hhhcCCCCCcc-----CCCCCceeeccccCCCEEEEEEec-CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 211 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 211 ~~g~~~~~f~l-----~~~g~~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.+|..+|+|++ +.+|+ .+++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++||+|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 46899999995 35668 899999999999999995 78999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHh---c---CCCcccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcc
Q 013684 285 STDRDQTSFESYFG---T---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 285 s~d~~~~~~~~~~~---~---~~~~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 340 (438)
|+|.... ...+.. . .+-++||+..|..+++++.||+. .+|+.||||++|+++...
T Consensus 77 S~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 77 SMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred eCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 9986543 222221 1 22378999999999999999985 479999999999999864
No 59
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.68 E-value=1.8e-16 Score=136.53 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=99.2
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChh-hhhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEecCC---C
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D 289 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~-~~~~vv~is~d~---~ 289 (438)
+|+|++ +.+|+ .+++++++||+++|+||++||++ |...++.|++++++++++ + .++++++|+.|. +
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence 689999 99999 99999999999999999999997 999999999999999865 2 359999999974 3
Q ss_pred HHHHHHHHhcCCCcccccCCch---hHHHHHhcCcCce--------------eeEEEECCCCcEEEcc
Q 013684 290 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~~ 340 (438)
.+.+++++++++ ..++++.+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 577899999886 567766653 4789999997654 4689999999999863
No 60
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.68 E-value=6.7e-17 Score=149.44 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=96.0
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
....|..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|++++++++++| ++||+|+.|
T Consensus 72 ~~~~g~~aPdF~--------l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d 141 (236)
T PLN02399 72 RAATEKSVHDFT--------VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCN 141 (236)
T ss_pred chhcCCCCCceE--------EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecc
Confidence 445889999999 9999999999999999999999999999999999999999999999876 999999974
Q ss_pred -------CCHHHHHHhH-hcCCcccccCCChHHHH-HHhhh-------cC------cCccceEEEecCCCCCCCcccccc
Q 013684 116 -------EDLNAFNNYR-ACMPWLAVPYSDLETKK-ALNRK-------FD------IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 -------~~~~~~~~~~-~~~~~~~~~~~d~~~~~-~l~~~-------~~------v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++.++..+++ ++++.....+.+.+..+ .+... ++ +...|+++|||+ +|+++.+..
T Consensus 142 ~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~~ 218 (236)
T PLN02399 142 QFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERYP 218 (236)
T ss_pred cccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEEC
Confidence 3556788887 44443221221111001 22222 22 456799999999 999998765
No 61
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.68 E-value=5.6e-16 Score=141.64 Aligned_cols=118 Identities=12% Similarity=0.159 Sum_probs=94.9
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCC-CEE-EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
+|..+|+|++ +.+| .+++++++| |++ |++||++|||.|..+++.|.+++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 4788999999 7776 489999998 654 55788999999999999999999999876 89999999995
Q ss_pred CH--HHHHHHHhcC--CCcccccCCchhHHHHHhcCcC--------ceeeEEEECCCCcEEEcc
Q 013684 289 DQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ--------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~--~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~--------~~P~~~lid~~G~i~~~~ 340 (438)
.. .+|.+.+++. .-+.||+..|.+..+++.||+. ..|++||||++|+|+...
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 32 1233322221 2378999999999999999985 245799999999999874
No 62
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.68 E-value=1.5e-16 Score=141.70 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=102.4
Q ss_pred hccchhHHHHHhhcccccCCCCCEEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC--
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-- 116 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-- 116 (438)
|..+|+|+ +.+.+|+.++++++ +||++||+||++|||.|..+++.|.++++++++.+ +++++|+.|.
T Consensus 1 g~~~p~f~--------l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFS--------LPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIE 70 (171)
T ss_pred CCcCCCcc--------ccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccc
Confidence 56788999 89999999999998 99999999999999999999999999999998764 9999999975
Q ss_pred -----CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 117 -----DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 -----~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.+.++++.+++++......|.. ..+.+.|++..+|+++|||+ +|++++...
T Consensus 71 ~~~~d~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~~ 127 (171)
T cd02969 71 AYPEDSPENMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRGR 127 (171)
T ss_pred cccccCHHHHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEeec
Confidence 67889999987764422222443 68899999999999999999 999987654
No 63
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.68 E-value=5e-16 Score=158.16 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=98.9
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC---
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--- 115 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D--- 115 (438)
.+..+|+|+ +.+.+|+.+.++ +||+|||+|||+||++|+.++|.|.+++++++..+ ++||.|+++
T Consensus 34 ~~~~lP~f~--------l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLK--------TADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeE--------eecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEeccccc
Confidence 345678888 899999999988 89999999999999999999999999999987654 999999863
Q ss_pred --CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 116 --EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+.++++++++.+++..+++ ..+....+.+.|+|.++|+++|||+ +|+++....
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~~~ 157 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRIVK 157 (521)
T ss_pred ccccHHHHHHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEEEe
Confidence 45677888888777655443 2222378999999999999999999 999987754
No 64
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.68 E-value=3.2e-16 Score=143.97 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=99.3
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEE-EEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|..+|+|++ +.+|+ ....++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds 77 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS 77 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence 47999999999 88887 44335589997665 778999999999999999999999876 89999999996
Q ss_pred CHH--HHHHHHhcC-C-CcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 289 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~~--~~~~~~~~~-~-~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
... +|.+++++. + -+.||+..|.+.++++.||+. ..|++||||++|+|++..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 543 466666531 1 378999999999999999973 479999999999999874
No 65
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=3.4e-16 Score=174.08 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=104.8
Q ss_pred hhcCCCCCcc-C--CCCCceeec-cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec-
Q 013684 212 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 286 (438)
Q Consensus 212 ~g~~~~~f~l-~--~~g~~~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~- 286 (438)
.|..+|+|.. + .+|+ .+++ ++++||+|+|+|||+||++|+.++|.|++++++|+++ ++.||+|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 4788999987 4 6888 8988 6899999999999999999999999999999999865 799999974
Q ss_pred --C--CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 287 --D--RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 287 --d--~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
| .+.+++++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 3 24678899998887 78898888888999999999999999999999999873
No 66
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.66 E-value=9.7e-17 Score=143.12 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=95.8
Q ss_pred HHhhccchhHHHHHhhcccccCCCCC--EEecccc-CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGE--EVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~--~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
..+|.++|+|+ +.+.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+
T Consensus 34 ~~vG~~ap~f~--------l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~ 99 (173)
T TIGR00385 34 ALIGKPVPAFP--------LAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVD 99 (173)
T ss_pred hhcCCCCCCcc--------ccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEE
Confidence 45789999999 8899987 4555565 79999999999999999999999987754 23 9999999
Q ss_pred cCCCHHHHHHhHhcCCcccccC-CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.++..++..++++++++...++ .|.. ..+.+.|++.++|++++||+ +|+++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~~~ 155 (173)
T TIGR00385 100 YKDQSQNALKFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDG---NGVILYRHA 155 (173)
T ss_pred CCCChHHHHHHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcC---CceEEEEEe
Confidence 9888888888888776543221 2433 68889999999999999999 999987754
No 67
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.65 E-value=7.6e-16 Score=136.60 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=94.3
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEE------EEEecCCCHHHHH----HHH
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEV------VFVSTDRDQTSFE----SYF 297 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~v------v~is~d~~~~~~~----~~~ 297 (438)
.++.++++||+++|+|||+||++|+.+.|.+.++. ++ ++.+ ++|+.|+...... .|+
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~----~~---------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fi 117 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK----AA---------KFPPVKYQTTTIINADDAIVGTGMFVKSSA 117 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHH----Hc---------CCCcccccceEEEECccchhhHHHHHHHHH
Confidence 67788899999999999999999999999999883 22 5777 9999987655444 444
Q ss_pred hcCCCcccc---cCCchhHHHHHhcCcCceeeE-EEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 298 GTMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 298 ~~~~~~~~p---~~~d~~~~l~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
++.. ..+| +..|..+.+...||+.++|++ ||||++|+|+.+. .| +.+++.++++...|++++
T Consensus 118 e~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G----~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 118 KKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EG----ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred HHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eC----CCCHHHHHHHHHHHHHHh
Confidence 4444 4555 777888889999999999988 8999999999884 34 456777777777776654
No 68
>PRK13189 peroxiredoxin; Provisional
Probab=99.65 E-value=1.7e-15 Score=139.96 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=96.1
Q ss_pred hhhcCCCCCcc-CCCCCceeeccc-cCCCEEE-EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|..+|+|++ +.+|. +++++ ++||+++ ++||+.|||.|..+++.|.+++++|+++ +++||+||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 47899999999 88875 66766 5999655 5677999999999999999999999876 8999999999
Q ss_pred CCHH--HHHHHHhc-CC-CcccccCCchhHHHHHhcCcC-------ceeeEEEECCCCcEEEcc
Q 013684 288 RDQT--SFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 288 ~~~~--~~~~~~~~-~~-~~~~p~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~ 340 (438)
.... +|.+.+.+ .+ -+.||+..|....+++.||+. ..|++||||++|+|++..
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 6432 33333222 22 378999999999999999985 579999999999998774
No 69
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.65 E-value=3.2e-16 Score=138.82 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=100.3
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|+++++++. +++|++||.|.
T Consensus 19 ~~G~~~P~f~--------l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~ 86 (167)
T PRK00522 19 QVGDKAPDFT--------LVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL 86 (167)
T ss_pred CCCCCCCCeE--------EEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC
Confidence 4799999999 899999999999999999999999999 9999999999999999982 39999999984
Q ss_pred CHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCccc---------eEEEecCCCCCCCcccccc
Q 013684 117 DLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P---------~~~lvd~~~~~G~v~~~~~ 173 (438)
....+++.++.+...++ +.|.. ...+++.|++...| +++|||+ +|+|++...
T Consensus 87 -~~~~~~f~~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~ 148 (167)
T PRK00522 87 -PFAQKRFCGAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL 148 (167)
T ss_pred -HHHHHHHHHhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence 45678888877654332 33422 25889999998777 9999999 999998765
No 70
>PLN02412 probable glutathione peroxidase
Probab=99.65 E-value=1.5e-16 Score=140.84 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=89.5
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC----
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---- 116 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---- 116 (438)
..+|+|+ +.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.| ++|++|+.|.
T Consensus 7 ~~~pdf~--------l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFT--------VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceE--------EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccC
Confidence 5678888 8999999999999999999999999999999999999999999999876 9999999752
Q ss_pred ---CHHHHHHhH-hcCCcccccCC--ChHHHHHHhhhc-------------CcCccceEEEecCCCCCCCcccccc
Q 013684 117 ---DLNAFNNYR-ACMPWLAVPYS--DLETKKALNRKF-------------DIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ---~~~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~~~-------------~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++..+++ ++++..+..+. +.+. ......| ++...|++||||+ +|+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~~ 148 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRYA 148 (167)
T ss_pred CCCCHHHHHHHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEEC
Confidence 444555553 55442211111 1110 1122222 2667899999999 999998765
No 71
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.64 E-value=3.9e-16 Score=134.75 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccC-CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+|..+|+|+ +.+.+|+.+++++++||+++|+||++| |++|+.++|.|++++++++ ++.+++|++|.
T Consensus 2 ~G~~aP~f~--------l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFT--------LVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcE--------EECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-
Confidence 588999999 899999999999999999999999999 6999999999999999973 39999999985
Q ss_pred HHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 118 LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.+..+++.++++...++ ..|.. ...+.+.|++.. .|+++|||+ +|+|+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~ 127 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL 127 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence 55667777777643333 22321 167888999863 799999999 999987765
No 72
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.64 E-value=1.1e-15 Score=134.83 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=80.5
Q ss_pred cCCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 214 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 214 ~~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
.+.++|.+ .+|+ .+++++++ +|+||++|||+|++++|.|++++++++ ++|++|++|.+.+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------------~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------------FSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------------CEEEEEEeCCCCC--
Confidence 35677885 5889 99999988 778999999999999999999998873 7899999986532
Q ss_pred HHHHhcCCCcccccCCc-hhHHHHHhcCc--CceeeEEEECCCCcEEE
Q 013684 294 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d-~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 338 (438)
..||+..| ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 67888764 55678889995 69999999999999964
No 73
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.64 E-value=6.5e-16 Score=134.23 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=99.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCC-CEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+|..+|+|. +.+.+|+.+++++++| |+++|.|| ++||+.|+..+|.|+++++++++.+ +.+++|+.|
T Consensus 2 ~~G~~~p~~~--------l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d 71 (149)
T cd03018 2 EVGDKAPDFE--------LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVD 71 (149)
T ss_pred CCCCcCCCcE--------ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCC
Confidence 3688999999 8999999999999999 99888888 9999999999999999999998765 999999988
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc------cceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. .+..+++.++++.....+.|......+.+.|++.. .|+++|||+ +|++++...
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~ 131 (149)
T cd03018 72 S-PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV 131 (149)
T ss_pred C-HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence 4 56688888876543222334322267888999873 348999999 999988765
No 74
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.63 E-value=7.8e-16 Score=132.22 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=98.5
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHH
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~ 120 (438)
.+|+|+ +.+.+|+.+++++++||+++|+|| ++|||.|..+++.|+++++++++.+ +++++|+.| +.+.
T Consensus 2 ~~p~f~--------l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~ 70 (140)
T cd03017 2 KAPDFT--------LPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPD-SVES 70 (140)
T ss_pred CCCCcc--------ccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHH
Confidence 578888 899999999999999999999999 5899999999999999999998765 999999998 4577
Q ss_pred HHHhHhcCCcccccCCChHHHHHHhhhcCcCcc---------ceEEEecCCCCCCCcccccc
Q 013684 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++.+.++.....+.|.+ ..+.+.|++... |+++|||+ +|++++...
T Consensus 71 ~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~~ 127 (140)
T cd03017 71 HAKFAEKYGLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVWR 127 (140)
T ss_pred HHHHHHHhCCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEEe
Confidence 8888887654322233444 688999999988 99999999 999987754
No 75
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.62 E-value=9.2e-16 Score=134.20 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=98.9
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEecc-CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|..+|+|+ +.+.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.| +++|+|+.|
T Consensus 5 ~~g~~~p~f~--------l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d- 73 (154)
T PRK09437 5 KAGDIAPKFS--------LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD- 73 (154)
T ss_pred CCCCcCCCcE--------eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-
Confidence 4689999999 89999999999999999999999986 67889999999999999999876 999999998
Q ss_pred CHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc------------ceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+++.+|.++++.....+.|.. ..+.+.|++... |+.+|||+ +|+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~~ 136 (154)
T PRK09437 74 KPEKLSRFAEKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHVF 136 (154)
T ss_pred CHHHHHHHHHHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEEE
Confidence 45888888886653221122433 678889998654 77899999 99998774
No 76
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.62 E-value=1.8e-15 Score=130.24 Aligned_cols=117 Identities=24% Similarity=0.423 Sum_probs=97.3
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCcc-chhhHHHHHHHHHHHhcCC-CCEEEEEEecCC---C
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---D 117 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~---~ 117 (438)
+|+|+ +.+.+|+.+++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|. +
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~ 73 (142)
T cd02968 2 GPDFT--------LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDT 73 (142)
T ss_pred CCceE--------EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCC
Confidence 57777 899999999999999999999999999997 9999999999999998764 359999999974 4
Q ss_pred HHHHHHhHhcC--CcccccCCChHHHHHHhhhcCcCcc--------------ceEEEecCCCCCCCcccc
Q 013684 118 LNAFNNYRACM--PWLAVPYSDLETKKALNRKFDIEGI--------------PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 118 ~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~~v~~~--------------P~~~lvd~~~~~G~v~~~ 171 (438)
.+.++++.+++ +|..+.. ..+....+++.|++... |+.+|||+ +|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~ 139 (142)
T cd02968 74 PEVLKAYAKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY 139 (142)
T ss_pred HHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence 67788888876 4766655 33334788999987543 57999999 9998865
No 77
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.62 E-value=1.3e-15 Score=136.00 Aligned_cols=118 Identities=20% Similarity=0.306 Sum_probs=94.6
Q ss_pred hhccchhHHHHHhhcccccCCCC----CEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIG----EEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g----~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
+|..+|+|+ +.+.+| +.+++++++||+++|+|| ++||++|..+++.|++++++|++.| +.+++||
T Consensus 1 vG~~aP~f~--------~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFK--------ATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVS 70 (173)
T ss_pred CCCcCCCCE--------eecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEe
Confidence 588899999 888877 789999999999999999 8999999999999999999998865 9999999
Q ss_pred cCCCHH--HHHHhHh------cCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLN--AFNNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~--~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+|.... .+.+... ..+|..+ .|.. ..+.+.|++. .+|+++|||+ +|++++...
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~ 137 (173)
T cd03015 71 TDSHFSHLAWRNTPRKEGGLGKINFPLL--ADPK--KKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV 137 (173)
T ss_pred cCCHHHHHHHHHhhhhhCCccCcceeEE--ECCc--hhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence 985422 2333322 1233222 2443 7888999986 6789999999 999998864
No 78
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.61 E-value=2.5e-15 Score=123.39 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=95.3
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC-HHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~-~~~~~~~~~~~~~~~~~ 134 (438)
+.+.+|+.+++++++||+++|+||++||++|+...+.|.++.+++++. ++.++.|++|.. .+.++++.+.+++....
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~ 81 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcCCCcce
Confidence 678999999999999999999999999999999999999999999754 499999999987 99999999987743333
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.. ..+.+.|++..+|+++|+|+ +|+++.+.
T Consensus 82 ~~~~~--~~~~~~~~~~~~P~~~l~d~---~g~v~~~~ 114 (116)
T cd02966 82 LLDPD--GELAKAYGVRGLPTTFLIDR---DGRIRARH 114 (116)
T ss_pred EEcCc--chHHHhcCcCccceEEEECC---CCcEEEEe
Confidence 33432 68899999999999999999 99888653
No 79
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.61 E-value=8.9e-16 Score=138.10 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=90.5
Q ss_pred hccchhHHHHHhhcccccCCCCCEEeccccCCCEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC--
Q 013684 40 MSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-- 116 (438)
Q Consensus 40 g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-- 116 (438)
+..+|+|+ +++.+|+.+++++++||++ ++.|||+|||+|+.++|.|++++++++++| ++|++|+.|.
T Consensus 17 ~~~~p~f~--------l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFE--------AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFM 86 (183)
T ss_pred CCcccceE--------eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEeccccc
Confidence 46778999 8999999999999999964 566799999999999999999999998876 9999999642
Q ss_pred -----CHHHHHHhHh-cCCcccccCCC--hH--HHHHHh------------hhcCcCccce---EEEecCCCCCCCcccc
Q 013684 117 -----DLNAFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLH 171 (438)
Q Consensus 117 -----~~~~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lvd~~~~~G~v~~~ 171 (438)
+.++..+++. ++++....+.+ .. ....+. ..+++.++|+ .||||+ +|+++.+
T Consensus 87 ~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~ 163 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKY 163 (183)
T ss_pred ccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEE
Confidence 4567778865 55543222211 11 101122 1236778995 699999 9999987
Q ss_pred cc
Q 013684 172 DG 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 164 ~~ 165 (183)
T PTZ00256 164 FS 165 (183)
T ss_pred EC
Confidence 64
No 80
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.60 E-value=1.6e-15 Score=136.84 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=93.9
Q ss_pred HhhccchhHHHHHhhcccccC-CCCC--EEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 38 LIMSLSQWYVQQLRRRMTSTK-EIGE--EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~-~~g~--~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+|+.+|+|+ +.+ .+|+ .+++++++||+++|+|| ++||++|+.++|.|++++++|++.| ++|++||
T Consensus 3 ~~G~~aP~f~--------l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS 72 (187)
T TIGR03137 3 LINTEIKPFK--------ATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVS 72 (187)
T ss_pred ccCCcCCCcE--------eeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 5799999999 777 5676 68888999999999999 9999999999999999999998876 9999999
Q ss_pred cCCCHHHHHHhHh------cCCcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 114 SDEDLNAFNNYRA------CMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~D~~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.|.. ...+.+.. .+++.. +.|.+ ..+++.|++. ..|+++|||+ +|++++...
T Consensus 73 ~D~~-~~~~~~~~~~~~~~~l~fpl--lsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~~ 136 (187)
T TIGR03137 73 TDTH-FVHKAWHDTSEAIGKITYPM--LGDPT--GVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVEI 136 (187)
T ss_pred CCCH-HHHHHHHhhhhhccCcceeE--EECCc--cHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEEE
Confidence 9864 33333332 223221 23443 7899999986 4699999999 999987754
No 81
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.60 E-value=4.8e-15 Score=132.29 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 287 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 287 (438)
..++|++ +.+|+ .+++++++||++||.|||+||++|. ..+.|++++++|+++ +++|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4678999 99999 9999999999999999999999996 699999999999876 8999999985
Q ss_pred -CCHHHHHHHHh-cCCCcccccC
Q 013684 288 -RDQTSFESYFG-TMPWLALPFG 308 (438)
Q Consensus 288 -~~~~~~~~~~~-~~~~~~~p~~ 308 (438)
.+.+++++|++ +++ +.||+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35678899997 555 778876
No 82
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.59 E-value=1.9e-15 Score=132.01 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=85.6
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------CCHHHHHHhHhc-
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNYRAC- 127 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-------~~~~~~~~~~~~- 127 (438)
+.+.+|+.+++++++||+++|+|||+|||+|+.++|.|++++++++++| ++|++|+.+ ++.+...+++++
T Consensus 7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~~~ 84 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFARRN 84 (153)
T ss_pred eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999876 999999851 456778888864
Q ss_pred CCcccccCCCh---HHHHHHhhhcC---cCccce----EEEecCCCCCCCcccccc
Q 013684 128 MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 128 ~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lvd~~~~~G~v~~~~~ 173 (438)
++.....+.+. +........|. ...+|+ .+|||+ +|+++.+..
T Consensus 85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~~ 137 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFWR 137 (153)
T ss_pred cCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEEC
Confidence 55432222220 00011111232 235898 999999 999997754
No 83
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.59 E-value=1.5e-14 Score=124.52 Aligned_cols=98 Identities=21% Similarity=0.405 Sum_probs=77.4
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+||+++|+||++||++|+.+.|.+.++++++.+ .+.|+.|++|.+. ..
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~----------~~~~v~v~vd~~~---------------------~~ 66 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD----------QVNFVMLNVDNPK---------------------WL 66 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc----------CeeEEEEEcCCcc---------------------cH
Confidence 4689999999999999999999999999998864 3789999888542 14
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 376 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~ 376 (438)
.+.+.|+|.++|+++++|++|+++.+. .|.. . .++|.+.|++++++.+.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~-------~G~~----~---~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQS-------IGLQ----P---KQVLAQNLDALVAGEPL 115 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEE-------eCCC----C---HHHHHHHHHHHHcCCCC
Confidence 578899999999999999999999873 3322 2 25566667776665544
No 84
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.59 E-value=6.8e-15 Score=126.31 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=95.9
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHH
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF 121 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~ 121 (438)
+|+|+ +.+.+|+.+++++++||+++|+|| ++||++|..++|.|++++++++..+ +.+++|+.| +.+..
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~ 70 (140)
T cd02971 2 APDFT--------LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSH 70 (140)
T ss_pred CCCce--------eccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHH
Confidence 57788 899999999999999999999999 7899999999999999999997665 999999987 55677
Q ss_pred HHhHhcC-CcccccCCChHHHHHHhhhcCcCccc---------eEEEecCCCCCCCcccccc
Q 013684 122 NNYRACM-PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 122 ~~~~~~~-~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lvd~~~~~G~v~~~~~ 173 (438)
.++.+++ +.....+.|.. ..+.+.|++...| +++|||+ +|++++...
T Consensus 71 ~~~~~~~~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~ 127 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEV 127 (140)
T ss_pred HHHHhcccCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEe
Confidence 8888876 43222223444 6888999988665 8999999 999998865
No 85
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.6e-15 Score=127.15 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=105.8
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|+.+|+|+ +.+.+|+.++|++++||+|+|+|| ..++|.|..+.-.+++.+.+|+..| .+|++||.|
T Consensus 4 l~~G~~aPdF~--------Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D 73 (157)
T COG1225 4 LKVGDKAPDFE--------LPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD 73 (157)
T ss_pred CCCCCcCCCeE--------eecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 45899999999 999999999999999999999999 8999999999999999999999976 999999999
Q ss_pred CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCccccc
Q 013684 116 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+..+.++|..+++..+...+|.+ .++++.||+. ..+++||||+ +|+|.+..
T Consensus 74 -s~~~~~~F~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~~ 136 (157)
T COG1225 74 -SPKSHKKFAEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYVW 136 (157)
T ss_pred -CHHHHHHHHHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEEe
Confidence 56778899998887655555666 7899999983 4689999999 99998654
No 86
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=5.6e-15 Score=123.98 Aligned_cols=103 Identities=20% Similarity=0.362 Sum_probs=84.6
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-CHHHHHHhHhcCCccccc
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYRACMPWLAVP 134 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~-~~~~~~~~~~~~~~~~~~ 134 (438)
+++.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|. +.+++.++.++++.....
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 88999999999999999999999999999999999999999876 4577888775 478888888876532111
Q ss_pred CCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 135 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 135 ~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+.+ ..+++.|++.++|+++++|+ +| ++..
T Consensus 78 ~~d~~--~~~~~~~~i~~~P~~~vid~---~g-i~~~ 108 (123)
T cd03011 78 INDPD--GVISARWGVSVTPAIVIVDP---GG-IVFV 108 (123)
T ss_pred EECCC--cHHHHhCCCCcccEEEEEcC---CC-eEEE
Confidence 11332 68999999999999999998 88 6544
No 87
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.56 E-value=1.2e-14 Score=125.96 Aligned_cols=114 Identities=19% Similarity=0.306 Sum_probs=90.6
Q ss_pred chhHHHHHhhcccccCCCCCEEeccccC-CC-EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHH
Q 013684 43 SQWYVQQLRRRMTSTKEIGEEVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 120 (438)
Q Consensus 43 ~p~f~~~~~~~~~~~~~~g~~v~l~~~~-gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~ 120 (438)
+|+|+ +.+.+|+.++++++. +| +++++||++|||+|+.++|.|+++++++++.| +.+++|+.|.. +.
T Consensus 2 ~p~f~--------l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~-~~ 70 (149)
T cd02970 2 APDFE--------LPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESP-EK 70 (149)
T ss_pred CCCcc--------ccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCH-HH
Confidence 57788 899999999999874 45 55555679999999999999999999998776 99999998855 44
Q ss_pred HHHhHhcCCcccccCCChHHHHHHhhhcCcC-----------------------------ccceEEEecCCCCCCCcccc
Q 013684 121 FNNYRACMPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lvd~~~~~G~v~~~ 171 (438)
...+.+..++....+.|.+ ..+.+.|++. .+|..+|||+ +|++++.
T Consensus 71 ~~~~~~~~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~ 145 (149)
T cd02970 71 LEAFDKGKFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFA 145 (149)
T ss_pred HHHHHHhcCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEE
Confidence 4567766654333333554 7888999984 7999999999 9998865
Q ss_pred c
Q 013684 172 D 172 (438)
Q Consensus 172 ~ 172 (438)
.
T Consensus 146 ~ 146 (149)
T cd02970 146 H 146 (149)
T ss_pred e
Confidence 4
No 88
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.55 E-value=9.5e-15 Score=131.15 Aligned_cols=124 Identities=25% Similarity=0.305 Sum_probs=95.4
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
+.+|..+|+|+ .+.+. +.+...++|++++||+++|+|| ++||++|..+++.|++++++|.+.| +++++||.|
T Consensus 2 ~~~~~~~p~f~---~~~~~--~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D 74 (187)
T PRK10382 2 SLINTKIKPFK---NQAFK--NGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTD 74 (187)
T ss_pred CccCCcCCCcE---EEEEe--CCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 35899999999 33333 4555678899999999999999 9999999999999999999999876 999999998
Q ss_pred CCHHHHHHhHhcC----CcccccCCChHHHHHHhhhcCc----Ccc--ceEEEecCCCCCCCcccccc
Q 013684 116 EDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 116 ~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lvd~~~~~G~v~~~~~ 173 (438)
.. ...+.|.+.. +..+....|.+ ..+++.|++ .++ |+++|||+ +|+|++...
T Consensus 75 ~~-~~~~a~~~~~~~~~~l~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~ 136 (187)
T PRK10382 75 TH-FTHKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV 136 (187)
T ss_pred CH-HHHHHHHHhhccccCCceeEEEcCc--hHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence 53 4444444321 21111223443 899999998 355 99999999 999987754
No 89
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.54 E-value=1.1e-14 Score=133.80 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=97.8
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++| ++|++||+|.
T Consensus 3 ~~Gd~aPdF~--------l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSME--------VVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCE--------eECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 5899999999 8899999888899999975 678899999999999999999999999876 9999999996
Q ss_pred C--HHHHHHhHhcC---CcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 117 D--LNAFNNYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~--~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. ...|.+++++. +..+..+.|.+ ..+++.||+. ..|++||||+ +|+++....
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~~ 136 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIMY 136 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEEE
Confidence 4 44566666532 32222233443 6889999973 6899999999 999987743
No 90
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.54 E-value=3.9e-14 Score=115.09 Aligned_cols=75 Identities=19% Similarity=0.382 Sum_probs=63.8
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.+||+|+|+|||+||++|+.+.|.|.++++++. ++.++.|+.|.+.+ .
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~d~~~~--------------------~ 60 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----------DVVFLLVNGDENDS--------------------T 60 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CCEEEEEECCCChH--------------------H
Confidence 3468999999999999999999999999998882 47888888876521 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+++.|+|.++||++++ ++|+++.+
T Consensus 61 ~~l~~~~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 61 MELCRREKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred HHHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence 578899999999998888 89999876
No 91
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.7e-14 Score=121.75 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=121.3
Q ss_pred hhhhcCCCCCcc-CC-CC---CceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 013684 210 NLLTNHDRGYLL-GH-PP---DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 283 (438)
Q Consensus 210 ~~~g~~~~~f~l-~~-~g---~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 283 (438)
.++|..+|+|+. .. .| . +++++++.||+++|+|| +...+.|..+...+.+.+++|++. |++|++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~-~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFE-EITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceee-EEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEE
Confidence 468999999999 44 55 3 79999999999999999 678999999999999999999987 899999
Q ss_pred EecCCC--HHHHHHHHhcCCC---cccccCCchhHHHHHhcCcC------ceeeEEEECCCCcEEEcccchhhhhccccC
Q 013684 284 VSTDRD--QTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENA 352 (438)
Q Consensus 284 is~d~~--~~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 352 (438)
||+|.. ..+|++...+.+. +.||+..|...++++.||+- +.-.+|+||++|++++....++ ..
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~i---- 146 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--TI---- 146 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--CC----
Confidence 999963 3466666555554 78999999999999999983 5678999999999988642221 11
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCcccccccccccccccccCCCCC
Q 013684 353 YPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGP 398 (438)
Q Consensus 353 ~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (438)
.+.++++...++.+ .....| +..+|..|..|...
T Consensus 147 ----GRn~dEilR~idAl-------q~~~~h-g~vcPanW~~G~~~ 180 (194)
T COG0450 147 ----GRNVDEILRVIDAL-------QFVAKH-GEVCPANWKPGDKT 180 (194)
T ss_pred ----CcCHHHHHHHHHHH-------HHHHHh-CCCccCCCCCCCcc
Confidence 22334444444321 123334 66777777666553
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=2.2e-14 Score=159.67 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=99.1
Q ss_pred HHhhccchhHHHHHhhcccccC--CCCCEEec-cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTK--EIGEEVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~--~~g~~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
...|..+|+|. ..+ .+|+.+++ ++++||+|+|+|||+||++|+.++|.|+++++++++++ ++|++|+
T Consensus 391 ~~~g~~~p~f~--------~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~ 460 (1057)
T PLN02919 391 KKTATKVPEFP--------PKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVH 460 (1057)
T ss_pred cccCCcCCCCc--------ccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEe
Confidence 33588889998 544 68888987 68999999999999999999999999999999998765 9999997
Q ss_pred c---C--CCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 114 S---D--EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 114 ~---D--~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
. | .+.+++++++.++++......|.. ..+.+.|++.++|+++|||+ +|+++.+..
T Consensus 461 ~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~--~~~~~~~~V~~iPt~ilid~---~G~iv~~~~ 520 (1057)
T PLN02919 461 SAKFDNEKDLEAIRNAVLRYNISHPVVNDGD--MYLWRELGVSSWPTFAVVSP---NGKLIAQLS 520 (1057)
T ss_pred cccccccccHHHHHHHHHHhCCCccEEECCc--hHHHHhcCCCccceEEEECC---CCeEEEEEe
Confidence 4 3 356778888887664322222433 67889999999999999999 999987643
No 93
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.53 E-value=2.1e-14 Score=131.11 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=93.6
Q ss_pred HhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEE-EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
.+|+.+|+|+ +.+..| .+++++++||+++| +||++||++|..+++.|++++++|+++| ++|++||+|.
T Consensus 3 ~vG~~aP~F~--------~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~ 71 (202)
T PRK13190 3 KLGQKAPDFT--------VNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDS 71 (202)
T ss_pred CCCCCCCCcE--------EecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 4799999999 888877 69999999997766 6899999999999999999999999876 9999999996
Q ss_pred CHH--HHH-HhHhcCCc-cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 117 DLN--AFN-NYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~~--~~~-~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... +|. ++.++.+. ..+| +.|.+ ..+++.|++. .+|+++|||+ +|+|.+...
T Consensus 72 ~~~~~~w~~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~~~ 134 (202)
T PRK13190 72 IYSHIAWLRDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWMIY 134 (202)
T ss_pred HHHHHHHHHhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEEEE
Confidence 432 333 23333331 1222 23444 7899999984 5899999999 999886643
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=3.2e-14 Score=126.24 Aligned_cols=125 Identities=11% Similarity=0.149 Sum_probs=90.0
Q ss_pred HHhhccchhHHHHHhhccccc--CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEE-----
Q 013684 37 FLIMSLSQWYVQQLRRRMTST--KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV----- 109 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~--~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i----- 109 (438)
..+|.+.|..+=+-.+.+++. +.+.+.++.++++||+++|+|||+||++|+.+.|.|.++ +.+| +.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccc
Confidence 456888887651112222221 123356678889999999999999999999999999998 3333 777
Q ss_pred -EEEecCCCHHHHHHhHh--------cCCcccccCCChHHHHHHhhhcCcCccceE-EEecCCCCCCCcccccc
Q 013684 110 -VFVSSDEDLNAFNNYRA--------CMPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHDG 173 (438)
Q Consensus 110 -v~vs~D~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lvd~~~~~G~v~~~~~ 173 (438)
++|+.|++......|.+ .+||..+.. |.. ..+...|++.++|++ ||||+ +|+++.+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll-D~~--g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~~ 164 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL-DDK--GAVKNAWQLNSEDSAIIVLDK---TGKVKFVKE 164 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEE-CCc--chHHHhcCCCCCCceEEEECC---CCcEEEEEe
Confidence 99999987655555544 334543333 443 678889999999998 89999 999998765
No 95
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.1e-13 Score=135.29 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=65.1
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
.++...+.-.-.....++|.|||+||++|++..|++.+.+..+++.+.++.+.-| |.+.+
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV--Dat~~------------------ 88 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV--DATEE------------------ 88 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe--ecchh------------------
Confidence 3444444444445678999999999999999999999999999998655666555 44433
Q ss_pred hHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 138 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 138 ~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
..++.+|+|.++||+.++. +|+.
T Consensus 89 ----~~~~~~y~v~gyPTlkiFr----nG~~ 111 (493)
T KOG0190|consen 89 ----SDLASKYEVRGYPTLKIFR----NGRS 111 (493)
T ss_pred ----hhhHhhhcCCCCCeEEEEe----cCCc
Confidence 7999999999999999998 6664
No 96
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.49 E-value=1.1e-13 Score=120.07 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++.+|+|||+||++|++++|.|++++++++ +.|++|++|.... ..+|...+.....
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------------~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~ 106 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG------------LPVYAFSLDGQGL-----------TGFPDPLPATPEV 106 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC------------CcEEEEEeCCCcc-----------cccccccCCchHH
Confidence 4556999999999999999999999998763 6799999986431 1233333222233
Q ss_pred -HHhc---CcCceeeEEEECCCCcEEE
Q 013684 316 -TKYF---DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 316 -~~~~---~v~~~P~~~lid~~G~i~~ 338 (438)
...| ++.++|++||||++|+++.
T Consensus 107 ~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 107 MQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 3455 8999999999999988654
No 97
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.49 E-value=1.1e-13 Score=112.96 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=64.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999998753 67888888865 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999875
No 98
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.49 E-value=4.8e-14 Score=129.63 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=94.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEec-cccCCCEEEE-EEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKV-SDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+|..+|+|+ +.+.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|+++| ++|++||+
T Consensus 7 ~~iG~~aPdF~--------l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~ 75 (215)
T PRK13191 7 PLIGEKFPEME--------VITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSV 75 (215)
T ss_pred ccCCCcCCCCE--------eecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEEC
Confidence 35899999999 8888997 555 5579997665 7889999999999999999999999876 99999999
Q ss_pred CCCHH--HHHHhHhc---CCcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLN--AFNNYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.... +|.++.++ .+.......|.+ ..+++.||+. ..|+++|||+ +|+|.....
T Consensus 76 Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~~ 141 (215)
T PRK13191 76 DSNISHIEWVMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLILY 141 (215)
T ss_pred CCHHHHHHHHhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEEe
Confidence 96543 45555542 222222233443 7899999973 4799999999 999987654
No 99
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.49 E-value=1.8e-13 Score=111.05 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|+|||+||++|+.+.|.+.++++++++. .+.++.+++| + .+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence 4789999999999999999999999999988643 4678888877 3 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|+++||++++ ++|+.+.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAVI 87 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence 6899999999999988 799988773
No 100
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-13 Score=115.78 Aligned_cols=70 Identities=26% Similarity=0.575 Sum_probs=64.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+.+|+|+|||+||+||+.+.|.|+++..+|.++ +++.-|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 579999999999999999999999999999765 89999999866 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+..|+|.++||+++| ++|+.+.+
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDR 130 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeee
Confidence 999999999999999 89998866
No 101
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.48 E-value=7.1e-14 Score=130.99 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=94.2
Q ss_pred HHHhhccchhHHHHHhhcccccC-CCC--CEEecccc-CCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTK-EIG--EEVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~-~~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
..++|+.+|+|+ +.+ .+| +.++++++ +||+++|+|| ++||++|..+++.|++++++|++.| ++|+
T Consensus 67 ~~~vGd~aPdF~--------l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~Vi 136 (261)
T PTZ00137 67 SSLVGKLMPSFK--------GTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVL 136 (261)
T ss_pred cccCCCCCCCCE--------eecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEE
Confidence 446899999999 665 345 46899998 8988888888 8999999999999999999999876 9999
Q ss_pred EEecCCC--HHHHHHh-Hhc---CCcccccCCChHHHHHHhhhcCcC-----ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDED--LNAFNNY-RAC---MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~--~~~~~~~-~~~---~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+||.|.. ..+|.+. .++ .+.....+.|.+ ..+++.||+. ..|+++|||+ +|+|++...
T Consensus 137 gIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~ 205 (261)
T PTZ00137 137 GVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV 205 (261)
T ss_pred EEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence 9999862 2334332 122 121111223443 7899999985 5899999999 999987754
No 102
>PRK15000 peroxidase; Provisional
Probab=99.48 E-value=6.6e-14 Score=127.41 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=91.5
Q ss_pred HhhccchhHHHHHhhcccccCCC--CCE---Eecccc-CCCEEEEEEec-cCCccchhhHHHHHHHHHHHhcCCCCEEEE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKEI--GEE---VKVSDL-EGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVV 110 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~~--g~~---v~l~~~-~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv 110 (438)
++|..+|+|+ +.+.. |+. ++++++ +||+++|+||+ .||++|+.+++.|++++++|+++| ++|+
T Consensus 3 ~vg~~aPdF~--------~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vi 72 (200)
T PRK15000 3 LVTRQAPDFT--------AAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVV 72 (200)
T ss_pred cCCCcCCCCE--------eecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEE
Confidence 4799999999 77653 443 455555 89999999998 599999999999999999999876 9999
Q ss_pred EEecCCCH--HHHHHh-HhcCCc--cccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 111 FVSSDEDL--NAFNNY-RACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 111 ~vs~D~~~--~~~~~~-~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+||.|... ..|.+. .+..+. ..+| +.|.+ ..+++.|++. .+|++++||+ +|+|++...
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~~ 142 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQVV 142 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEEe
Confidence 99999543 333332 222221 1222 23443 7899999997 7999999999 999987643
No 103
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.47 E-value=1.3e-13 Score=126.03 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=89.8
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCC-CEE-EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEG-KVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
+|+.+|+|+ +.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++| ++|++||+|.
T Consensus 1 vG~~aP~F~--------~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFE--------ADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeE--------EecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 588999999 8888884 89999988 654 558889999999999999999999999876 9999999995
Q ss_pred CH--HHHHHhHhc---CCcccccCCChHHHHHHhhhcCcC--------ccceEEEecCCCCCCCcccccc
Q 013684 117 DL--NAFNNYRAC---MPWLAVPYSDLETKKALNRKFDIE--------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 117 ~~--~~~~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~--------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.. .+|.+.+.. .++.+..+.|.+ ..+++.|++. ..|+++|||+ +|+|+....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~~ 134 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLILY 134 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEEe
Confidence 32 223332221 232222223444 7899999975 2457999999 999986654
No 104
>PHA02278 thioredoxin-like protein
Probab=99.46 E-value=3.1e-13 Score=109.33 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+|||+||++|+.+.|.+.++.+++.. .+.++.|++|.+.. | ..+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 578999999999999999999999999887543 35788898886420 0 256
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEEE
Confidence 8999999999999999 899999873
No 105
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.46 E-value=3.4e-13 Score=117.90 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=99.6
Q ss_pred hhcCCCCCcc-CCC---CCceeeccc-cCCCEEEEEEe-cCCChhhhhh-hHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 013684 212 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 283 (438)
Q Consensus 212 ~g~~~~~f~l-~~~---g~~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 283 (438)
+|..+|+|.+ +.+ |+ .+++++ ++||+++|+|| +.|||.|..+ ++.+.+.+++|.+. +. .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4788999999 775 88 999999 68887777777 7899999999 99999999999876 77 5999
Q ss_pred EecCCCHHHHHHHHhcCCC-cccccCCchhHHHHHhcCcC-----------ceeeEEEECCCCcEEEcc
Q 013684 284 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 284 is~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 340 (438)
||.| +....++|.++++. ..||++.|.+.++++.||+. ..+.+++|| +|+|++..
T Consensus 71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 9999 55678888888874 48999999999999999982 146789999 79999865
No 106
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.45 E-value=5.2e-13 Score=110.01 Aligned_cols=73 Identities=16% Similarity=0.387 Sum_probs=63.8
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|++++|+||++||++|+.+.|.+.++.+++++. ++.++.|++|.+ .
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~ 69 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------R 69 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------H
Confidence 36899999999999999999999999999999753 577888877754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|.++||++++ ++|+++.+
T Consensus 70 ~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 70 RLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred HHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 68899999999999999 69988776
No 107
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.45 E-value=5.5e-13 Score=107.66 Aligned_cols=69 Identities=14% Similarity=0.305 Sum_probs=57.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
++++||+++|.|||+||++|+.+.|.+.+++++++ ++.++.|+.+..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~---------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI---------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence 45689999999999999999999999999999885 356777755421
Q ss_pred hHHHHHhcCcCceeeEEEECCC
Q 013684 312 IKELTKYFDVQGIPCLVIIGPE 333 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~ 333 (438)
...+++.|+|.++||+++++++
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred CHHHHHhcCCeecCEEEEEcCC
Confidence 2578999999999999999644
No 108
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.43 E-value=2.3e-13 Score=117.04 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCCCCEEeccc--cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccC
Q 013684 58 KEIGEEVKVSD--LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY 135 (438)
Q Consensus 58 ~~~g~~v~l~~--~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~ 135 (438)
++.+....+.+ .+||+++|+|||+||++|+.+.|.|.++++++.+. +.++.|++|.+..
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------- 65 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------- 65 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc----------------
Confidence 34444444443 36899999999999999999999999999998643 7788888875421
Q ss_pred CChHHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 136 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 136 ~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+.+.|+|.++|+++++++ +|+++.+..
T Consensus 66 ------~~~~~~~~V~~iPt~v~~~~---~G~~v~~~~ 94 (142)
T cd02950 66 ------LPEIDRYRVDGIPHFVFLDR---EGNEEGQSI 94 (142)
T ss_pred ------HHHHHHcCCCCCCEEEEECC---CCCEEEEEe
Confidence 46678899999999999998 999886644
No 109
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.43 E-value=3.4e-13 Score=122.98 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHhhccchhHHHHHhhcccccC----CCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTK----EIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~----~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
..+|+.+|+|+ +.+ .+|+.+++++++||+++|+|| +.||++|..+++.|++++++|++.| ++|++
T Consensus 6 ~~~G~~aPdF~--------~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~ 75 (199)
T PTZ00253 6 AKINHPAPSFE--------EVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLA 75 (199)
T ss_pred cccCCcCCCCE--------eeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEE
Confidence 35799999999 544 566889999999999999999 5889999999999999999999876 99999
Q ss_pred EecCCCHHH--HHHhHh-c--CCccccc-CCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNA--FNNYRA-C--MPWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~--~~~~~~-~--~~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.|..... |....+ . .+-..+| +.|.+ .++++.|++. .+|+.+|||+ +|+++....
T Consensus 76 IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~~~ 144 (199)
T PTZ00253 76 CSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQITV 144 (199)
T ss_pred EeCCCHHHHHHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECC---CCEEEEEEe
Confidence 999865432 211111 1 1111223 22443 8999999985 4799999999 999887543
No 110
>PRK13189 peroxiredoxin; Provisional
Probab=99.42 E-value=4.3e-13 Score=123.98 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccc-cCCCEEE-EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSD-LEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+|+.+|+|+ +.+.+|+ +.+++ ++||+++ ++||++||+.|..+++.|++++++|+++| ++|++||+
T Consensus 9 ~~vG~~aPdF~--------~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~ 77 (222)
T PRK13189 9 PLIGDKFPEFE--------VKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSI 77 (222)
T ss_pred ccCCCcCCCcE--------eEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEEC
Confidence 35899999999 8888886 77776 4999655 57789999999999999999999999876 99999999
Q ss_pred CCCHH--HHHHhHhc-C--CcccccCCChHHHHHHhhhcCcC-------ccceEEEecCCCCCCCcccccc
Q 013684 115 DEDLN--AFNNYRAC-M--PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 115 D~~~~--~~~~~~~~-~--~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.... +|.+...+ . +..+..+.|.+ ..+++.|++. .+|++||||+ +|+|++...
T Consensus 78 D~~~~h~aw~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~~ 143 (222)
T PRK13189 78 DQVFSHIKWVEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAILY 143 (222)
T ss_pred CCHHHHHHHHHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEEe
Confidence 96432 33333221 1 22111222443 7899999975 5799999999 999976643
No 111
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.42 E-value=4.8e-13 Score=108.68 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=62.5
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.+||+|+|+|||+||++|+.+.|.|.++++++ . ++.++.|+.|.+.. ...+++.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~--~v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--N--DVVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--C--CCEEEEEECCCChH---------------------HHHHHHH
Confidence 346899999999999999999999999999998 2 37788888775422 1578899
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|+|.++||++++ + +|+++.+.
T Consensus 67 ~~V~~~Pt~~~~-~---~G~~v~~~ 87 (103)
T cd02985 67 EKIIEVPHFLFY-K---DGEKIHEE 87 (103)
T ss_pred cCCCcCCEEEEE-e---CCeEEEEE
Confidence 999999998888 5 88877553
No 112
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.42 E-value=2.6e-13 Score=119.67 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCC
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD 137 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d 137 (438)
..+|+.+++++++ +|+||++|||+|++++|.|+++++++ + ++|++|++|.+.+ ..++.+ ..+
T Consensus 60 l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~--------~~fPv~-~dd 121 (181)
T PRK13728 60 LSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD--------TAFPEA-LPA 121 (181)
T ss_pred CCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------CCCceE-ecC
Confidence 4699999999997 77899999999999999999999997 3 8999999986532 121111 101
Q ss_pred hHHHHHHhhhcCc--CccceEEEecCCCCCCCccc
Q 013684 138 LETKKALNRKFDI--EGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 138 ~~~~~~l~~~~~v--~~~P~~~lvd~~~~~G~v~~ 170 (438)
.. ..+.+.|++ .++|++||||+ +|+++.
T Consensus 122 ~~--~~~~~~~g~~~~~iPttfLId~---~G~i~~ 151 (181)
T PRK13728 122 PP--DVMQTFFPNIPVATPTTFLVNV---NTLEAL 151 (181)
T ss_pred ch--hHHHHHhCCCCCCCCeEEEEeC---CCcEEE
Confidence 22 567778985 69999999999 998863
No 113
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.41 E-value=1.5e-12 Score=104.21 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|+++.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG----------QFVLAKVNCDAQ-----------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC----------cEEEEEEeccCC-----------------------HH
Confidence 478999999999999999999999999998864 367778877754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|++++++ +|+++.+
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeee
Confidence 89999999999999995 8988765
No 114
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.41 E-value=8e-13 Score=107.92 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=63.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|.|||+|||||+.+.|.|.++++++.+. +.++.|++|.. .++++.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 4689999999999999999999999999998543 67787877754 68899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 66 V~~iPTf~~fk----~G~~v~~~~ 85 (114)
T cd02954 66 LYDPPTVMFFF----RNKHMKIDL 85 (114)
T ss_pred CCCCCEEEEEE----CCEEEEEEc
Confidence 99999999998 888876653
No 115
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9.8e-13 Score=106.54 Aligned_cols=70 Identities=31% Similarity=0.552 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|.++|+|+|+|||||+.+.|.+.+|+.+|. ++.++.|++|.. .+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EE 65 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------Hh
Confidence 36899999999999999999999999999987 357788887752 77
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|+++||++++ ++|+.+.+
T Consensus 66 ~~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 66 VAKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred HHHhcCceEeeEEEEE-ECCEEEEE
Confidence 8999999999999999 89988877
No 116
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.38 E-value=3.3e-12 Score=107.58 Aligned_cols=87 Identities=28% Similarity=0.469 Sum_probs=66.0
Q ss_pred cCC-CEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC
Q 013684 234 LVG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 309 (438)
Q Consensus 234 ~~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~ 309 (438)
-.| |+++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|++|.+.+.. . ++...
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~ 70 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEA 70 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCC
Confidence 357 89999999999999999999885 55556653 4788889887653211 1 11112
Q ss_pred chhHHHHHhcCcCceeeEEEECCC-CcEEEcc
Q 013684 310 PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQ 340 (438)
Q Consensus 310 d~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~ 340 (438)
.....++..|+|.++||++++|++ |+++.+.
T Consensus 71 ~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~ 102 (125)
T cd02951 71 LSEKELARKYRVRFTPTVIFLDPEGGKEIARL 102 (125)
T ss_pred ccHHHHHHHcCCccccEEEEEcCCCCceeEEe
Confidence 245789999999999999999999 8998773
No 117
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.37 E-value=2.1e-12 Score=104.45 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=62.2
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..+++++|+||++||++|+.+.|.+.++++++++ .+.++.|++|.. .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----------~~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG----------VIRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC----------ceEEEEEeCCcc-----------------------H
Confidence 3568999999999999999999999999999874 378888888754 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 68999999999999999 78876544
No 118
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.35 E-value=4.2e-12 Score=110.10 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=61.0
Q ss_pred CCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 61 GEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 61 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
|+.+.++ ++.+|+|||+||++|++++|.|+++++++ + +.|++|++|.... ..++ ..+ +.+.
T Consensus 44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~-~~~~ 104 (153)
T TIGR02738 44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPL-PATP 104 (153)
T ss_pred chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---ccc-CCch
Confidence 4444444 45699999999999999999999999886 2 7899999986431 1122 111 1111
Q ss_pred HHHHhhhc---CcCccceEEEecCCCCCCCccc
Q 013684 141 KKALNRKF---DIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 141 ~~~l~~~~---~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
..+...| ++.++|++++||+ +|.++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~---~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNV---NTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence 2233445 8899999999999 987643
No 119
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.35 E-value=4.4e-11 Score=123.12 Aligned_cols=68 Identities=22% Similarity=0.473 Sum_probs=56.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+|||+||++|+.+.|.+.++++.++..+.++.++.|+.+.. .++++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence 578999999999999999999999999999987654466665554432 68899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|+++++..
T Consensus 73 i~~~Pt~~~~~~ 84 (462)
T TIGR01130 73 VSGYPTLKIFRN 84 (462)
T ss_pred CccccEEEEEeC
Confidence 999999999973
No 120
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.35 E-value=2.5e-12 Score=103.81 Aligned_cols=68 Identities=15% Similarity=0.347 Sum_probs=56.1
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
++.+||+++|+|||+||++|+.+.|.|.++++++++ +.++.|+.+. .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~----------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK----------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC----------------------HHHHH
Confidence 456899999999999999999999999999999842 5566664331 11 57889
Q ss_pred hcCcCccceEEEecC
Q 013684 147 KFDIEGIPCLVVLQP 161 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~ 161 (438)
+|+|.++||++++++
T Consensus 67 ~~~V~~~PT~~lf~~ 81 (100)
T cd02999 67 RYGVVGFPTILLFNS 81 (100)
T ss_pred hcCCeecCEEEEEcC
Confidence 999999999999984
No 121
>PRK09381 trxA thioredoxin; Provisional
Probab=99.34 E-value=8.7e-12 Score=102.29 Aligned_cols=71 Identities=23% Similarity=0.508 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++.. ..
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hh
Confidence 367999999999999999999999999999864 478888888765 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|++.++|+++++ ++|+++.+
T Consensus 67 ~~~~~~v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 67 TAPKYGIRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred HHHhCCCCcCCEEEEE-eCCeEEEE
Confidence 6788999999999999 79998876
No 122
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.34 E-value=1.4e-12 Score=116.36 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=67.6
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC------
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD------ 115 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D------ 115 (438)
.+++|+ +.+.+|+.++|++++||+|||.|||+||++|+ ++|.|+++++++++.| ++|++|+.+
T Consensus 4 ~~~~f~--------~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTV--------VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcE--------eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCC
Confidence 356777 88999999999999999999999999999996 6999999999999876 999999985
Q ss_pred -CCHHHHHHhHh-cCCc
Q 013684 116 -EDLNAFNNYRA-CMPW 130 (438)
Q Consensus 116 -~~~~~~~~~~~-~~~~ 130 (438)
.+.++..+|++ +++.
T Consensus 73 ~~~~~ei~~f~~~~~g~ 89 (183)
T PRK10606 73 PGSDEEIKTYCRTTWGV 89 (183)
T ss_pred CCCHHHHHHHHHHccCC
Confidence 36677888886 5543
No 123
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.34 E-value=3.6e-12 Score=121.18 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=69.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
...+++++|+++||+||++||++|+.+.|.|.+++++++ +.|++|++|.+.. -.||.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------------~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------------IEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------------cEEEEEeCCCCcc-----------ccCCc
Confidence 356778889999999999999999999999999988873 6899999986532 12444
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+ +..+.+.|||.++|+++|+|++|+.+.
T Consensus 215 ~~~-d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 215 ARP-DAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred ccC-CHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 432 356789999999999999999654443
No 124
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.33 E-value=5.5e-12 Score=102.59 Aligned_cols=77 Identities=25% Similarity=0.445 Sum_probs=62.0
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
..||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+..
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~------------------- 59 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP------------------- 59 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------
Confidence 3578999999999999999999887 567777653 47888888764321
Q ss_pred hhHHHHHhcCcCceeeEEEECC-CCcEEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGP-EGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 339 (438)
....++++|++.++||++++++ +|+++.+
T Consensus 60 ~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 60 EITALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 1367889999999999999988 8988766
No 125
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.33 E-value=1e-11 Score=110.64 Aligned_cols=121 Identities=21% Similarity=0.361 Sum_probs=96.2
Q ss_pred hhcCCCCCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-
Q 013684 212 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 288 (438)
Q Consensus 212 ~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~- 288 (438)
.....++|++ |.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++.++ +.++++|+||+|.
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 3456789999 99999 9999999999999999999998 6999999999999999875 4689999999995
Q ss_pred --CHHHHHHHHhcCC--CcccccCCchhHHHHHhcCcC----------------ceeeEEEECCCCcEEEcc
Q 013684 289 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ----------------GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 --~~~~~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~~ 340 (438)
+.+.+++|.+.++ |..+....+...++.+.|++. ....++|||++|+++...
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 3567888988654 444444445667788888863 233789999999998763
No 126
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-12 Score=108.69 Aligned_cols=70 Identities=21% Similarity=0.484 Sum_probs=62.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+.+|+|+|||+||+||+.+.|.|+++.+++++. +.+.-|++|+. .+++..|+|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~I 113 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYEI 113 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcce
Confidence 579999999999999999999999999999654 88988888765 678899999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++|++++|+ +|+.+.+
T Consensus 114 ~avPtvlvfk----nGe~~d~ 130 (150)
T KOG0910|consen 114 SAVPTVLVFK----NGEKVDR 130 (150)
T ss_pred eeeeEEEEEE----CCEEeee
Confidence 9999999999 7877744
No 127
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.33 E-value=5.2e-12 Score=103.93 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence 5689999999999999999999999999999753 77888888755 45
Q ss_pred HH-HhcCcCceeeEEEECCCCcEE
Q 013684 315 LT-KYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~-~~~~v~~~P~~~lid~~G~i~ 337 (438)
++ +.|+|.++||+.++ ++|+..
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~ 97 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGP 97 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccc
Confidence 66 58999999999999 777754
No 128
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.33 E-value=1.9e-11 Score=99.44 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.|.+.++++++++. +.++.+..++++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence 4579999999999999999999999999999754 23466666766543 56
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++.|+|.++||++++ .+|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLL-KGDLA 84 (104)
T ss_pred HHhhcCCccccEEEEE-cCCCc
Confidence 7889999999999999 45543
No 129
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.8e-12 Score=117.20 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=64.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+-++|||+||++||++|+.++|.|.++..+|+++ +.++.|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------hh
Confidence 4469999999999999999999999999999876 88888888876 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+...|||+++||+|+| ++|+.+.-
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdg 112 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDG 112 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCccc
Confidence 8999999999999999 99999875
No 130
>PHA02278 thioredoxin-like protein
Probab=99.31 E-value=4.7e-12 Score=102.45 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=62.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+|||+||+||+.+.|.+.++++++.. +..++.|++|.+.. + ..++++.|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~-----------------d---~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV-----------------D---REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc-----------------c---cHHHHHHCC
Confidence 578999999999999999999999999887532 25678888875421 1 157899999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++||++++. +|+.+.+..
T Consensus 70 I~~iPT~i~fk----~G~~v~~~~ 89 (103)
T PHA02278 70 IMSTPVLIGYK----DGQLVKKYE 89 (103)
T ss_pred CccccEEEEEE----CCEEEEEEe
Confidence 99999999998 788776543
No 131
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.30 E-value=3.1e-12 Score=106.23 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=58.5
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
.+..+||+|+|+|||+||++|+.+.|.+.+..+.... +..++.|.+|.+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~-------------------- 63 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE-------------------- 63 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC--------------------
Confidence 3445689999999999999999999999887665432 2356667776542
Q ss_pred hhHHHHHhcCcCc--eeeEEEECCCCcEEEc
Q 013684 311 TIKELTKYFDVQG--IPCLVIIGPEGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~--~P~~~lid~~G~i~~~ 339 (438)
....+.|++.+ +||++++|++|+++.+
T Consensus 64 --~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 --EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred --CchhhhcccCCCccceEEEECCCCCCchh
Confidence 12345677876 9999999999999875
No 132
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.30 E-value=6.9e-12 Score=101.67 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+|||+||++|+.+.|.|.++++++++. .+.++.++.| . .+++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C------------------------HHHHHHcC
Confidence 4789999999999999999999999999998643 2677777666 2 45689999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
|.++|+++++. +|+.+.+..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~~~ 88 (102)
T cd02948 69 GKCEPTFLFYK----NGELVAVIR 88 (102)
T ss_pred CCcCcEEEEEE----CCEEEEEEe
Confidence 99999988886 787765543
No 133
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.30 E-value=1.1e-11 Score=107.23 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+.+.|.+.++++++.+. ++.++.|++|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999988643 689999998866 45
Q ss_pred HHHhcCcCc------eeeEEEECCCCcEEEccc
Q 013684 315 LTKYFDVQG------IPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 315 l~~~~~v~~------~P~~~lid~~G~i~~~~~ 341 (438)
+++.|+|.+ +||++++ ++|+.+.+..
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~ 125 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRP 125 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEe
Confidence 777788876 9999999 7999987754
No 134
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.30 E-value=2e-11 Score=98.93 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+|+|+|.|+|+|||+|+.+.|.|.++++++++. +.+..|++|.. ++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence 5799999999999999999999999999999742 56777777754 77
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.+.||++++ ++|+-+.-
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEE
Confidence 9999999999999999 77766544
No 135
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.30 E-value=6e-12 Score=101.79 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=63.0
Q ss_pred CCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh
Q 013684 59 EIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 138 (438)
Q Consensus 59 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~ 138 (438)
++++.+.....++++++|+||++||++|+.+.|.+.++++++++ ++.+..|+.|..
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~--------------------- 61 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDD--------------------- 61 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCcc---------------------
Confidence 34444433334568999999999999999999999999999864 277777777643
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..+++.|+|.++||++++. +|...
T Consensus 62 ---~~~~~~~~v~~~Pt~~~~~----~g~~~ 85 (101)
T cd03003 62 ---RMLCRSQGVNSYPSLYVFP----SGMNP 85 (101)
T ss_pred ---HHHHHHcCCCccCEEEEEc----CCCCc
Confidence 5788999999999999995 67644
No 136
>PRK10996 thioredoxin 2; Provisional
Probab=99.29 E-value=2.4e-11 Score=104.26 Aligned_cols=71 Identities=28% Similarity=0.550 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++.. ..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence 478999999999999999999999999988764 477777777644 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEE
Confidence 8999999999999998 68998876
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.29 E-value=3e-11 Score=97.61 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=57.6
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
++|+ ++|.|||+||++|+.+.|.+.++++.++.. ++.+..|+++.+ .
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------P 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------H
Confidence 3455 689999999999999999999999876533 577888877654 5
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.+++.|+|.++||++++ ++|++
T Consensus 62 ~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred hHHHHcCCcccCEEEEe-CCCCE
Confidence 67899999999999998 88986
No 138
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.29 E-value=9.7e-12 Score=102.42 Aligned_cols=95 Identities=27% Similarity=0.493 Sum_probs=65.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.||+++++||++|||+|+.+.+.+.+..+ +.... ..++.++.++++.+.+....+....+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VARYL------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHCEE------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHHHh------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 58999999999999999999998886544 22110 125789999988766555555543331 122234568
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+.+.|||.++||++++|++|+++.+
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEE
Confidence 9999999999999999999998875
No 139
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.28 E-value=1.1e-11 Score=102.07 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=61.8
Q ss_pred ccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 68 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 68 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
...|++++|+|||+||++|+.+.|.+.++++++.+.+ +.++.|+.|.. ..+++.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence 3468999999999999999999999999999997643 77777766633 577899
Q ss_pred cCcCccceEEEecCCCCCCCcccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|+|.++|+++++. +|+++.+
T Consensus 75 ~~V~~~Pt~~i~~----~g~~~~~ 94 (111)
T cd02963 75 LGAHSVPAIVGII----NGQVTFY 94 (111)
T ss_pred cCCccCCEEEEEE----CCEEEEE
Confidence 9999999999996 7776544
No 140
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.28 E-value=1.5e-11 Score=99.88 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|.||++||++|+.+.|.+.++.+++.+ .+.++.|+++.. ..
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ES 64 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HH
Confidence 357999999999999999999999999999864 377888887754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|+++||++++..+|+.+.+
T Consensus 65 ~~~~~~i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 65 LCQQANIRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred HHHHcCCCcccEEEEEcCCCCCceE
Confidence 8999999999999999665466554
No 141
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.27 E-value=5e-11 Score=101.19 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++|+|.|||+||++|+.+.|.|.++++++++. +.|+-|++|.. ++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence 4679999999999999999999999999998754 67788888865 78
Q ss_pred HHHhcCcCceeeEE-EECCCCc-EEEc
Q 013684 315 LTKYFDVQGIPCLV-IIGPEGK-TVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~-lid~~G~-i~~~ 339 (438)
++++|+|.+.|+++ ++ ++|+ .+.+
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEE
Confidence 99999999887766 66 8887 6655
No 142
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.27 E-value=3.9e-11 Score=98.26 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+|||+||++|+++.|.+.++++++++.. + ...++.++.|++|.. .+
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~---~-~~~~~~~~~vd~d~~-----------------------~~ 69 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF---P-DAGKVVWGKVDCDKE-----------------------SD 69 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc---C-CCCcEEEEEEECCCC-----------------------HH
Confidence 35789999999999999999999999999886430 0 001467777777754 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+++.|+|.++||++++ ++|++.
T Consensus 70 l~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 70 IADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHHhCCCCcCCEEEEE-eCCcCc
Confidence 8999999999999999 788843
No 143
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.26 E-value=1.9e-11 Score=97.81 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|+.|.. ..+++.|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQ------------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCC------------------------HHHHHHcC
Confidence 478999999999999999999999999999854 266777766543 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+.+.+
T Consensus 64 i~~~Pt~~~~~----~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA----AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe----CCEEeee
Confidence 99999999997 7766543
No 144
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.26 E-value=2.4e-11 Score=99.79 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+||+++|.||++||++|+++.|.+.++++.+++. ++.++.|++|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4789999999999999999999999999999754 6888888887631 34
Q ss_pred HHH-hcCcCceeeEEEECCCCcEEE
Q 013684 315 LTK-YFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 315 l~~-~~~v~~~P~~~lid~~G~i~~ 338 (438)
+++ .|+++++||+++++++++...
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQPI 93 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCce
Confidence 554 599999999999987765443
No 145
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.26 E-value=3e-11 Score=107.67 Aligned_cols=120 Identities=19% Similarity=0.353 Sum_probs=94.6
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE--- 116 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~--- 116 (438)
...|+|+ +.|.+|+.+++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++||+|.
T Consensus 30 ~~~~~f~--------L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D 101 (174)
T PF02630_consen 30 RIVPDFT--------LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD 101 (174)
T ss_dssp CSSST-E--------EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC
T ss_pred ccCCCcE--------EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC
Confidence 3446677 99999999999999999999999999998 99999999999999999877789999999983
Q ss_pred CHHHHHHhHhcCC--cccccCCChHHHHHHhhhcCcC----------------ccceEEEecCCCCCCCccccc
Q 013684 117 DLNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIE----------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~----------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+++.+++|.+.++ |..+.+ +.....++.+.|++. +...++|||+ +|+++...
T Consensus 102 Tp~~L~~Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~y 171 (174)
T PF02630_consen 102 TPEVLKKYAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAIY 171 (174)
T ss_dssp -HHHHHHHHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEEE
T ss_pred CHHHHHHHHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEEE
Confidence 5778888888653 554444 344446777777653 4568899999 99987654
No 146
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.25 E-value=4.3e-11 Score=98.81 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++.+++. ++.++-|+++.. ..
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PF 66 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HH
Confidence 35789999999999999999999999998875 467888887755 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 67 l~~~~~v~~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 67 LVEKLNIKVLPTVILF-KNGKTVDRI 91 (113)
T ss_pred HHHHCCCccCCEEEEE-ECCEEEEEE
Confidence 8999999999999999 899988763
No 147
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.25 E-value=3.3e-11 Score=97.37 Aligned_cols=71 Identities=25% Similarity=0.523 Sum_probs=59.3
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
.++|+||++||++|+.+.|.+.++++++++. ..++.++.|+++.. ..+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence 4999999999999999999999999999752 13577887777644 56789
Q ss_pred hcCcCceeeEEEECCCCcEEEc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.|+|.++|+++++ ++|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDK 88 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeE
Confidence 9999999999999 68876654
No 148
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.24 E-value=2e-11 Score=106.68 Aligned_cols=118 Identities=13% Similarity=0.186 Sum_probs=91.8
Q ss_pred hhccchhHHHHHhhcccccCCC---CCEEeccc-cCCCEEEEEEe-ccCCccchhh-HHHHHHHHHHHhcCCCCE-EEEE
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEI---GEEVKVSD-LEGKVTALYFS-ANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVF 111 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~---g~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~iv~ 111 (438)
+|+.+|+|+ +.+.+ |+.++|++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+.| . +|++
T Consensus 1 vG~~aPdF~--------l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVT--------LFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVIC 70 (155)
T ss_pred CCCcCCCeE--------eeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEE
Confidence 588999999 78875 99999999 58876655555 9999999999 999999999999876 8 6999
Q ss_pred EecCCCHHHHHHhHhcCCc-cccc-CCChHHHHHHhhhcCcC-----------ccceEEEecCCCCCCCcccccc
Q 013684 112 VSSDEDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 112 vs~D~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
||.|. ....+++.++++. ..++ .+|.+ .++++.||+. ..+.+++|| +|+|++...
T Consensus 71 iS~D~-~~~~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~~ 138 (155)
T cd03013 71 VSVND-PFVMKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLFV 138 (155)
T ss_pred EECCC-HHHHHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEEE
Confidence 99994 4557777777664 1233 33544 7999999983 146778887 788876654
No 149
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.24 E-value=4.3e-11 Score=95.80 Aligned_cols=70 Identities=19% Similarity=0.415 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. .++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence 68999999999999999999999999988732 466666655432 578
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|++.++||++++ ++|+++.+
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEE
Confidence 899999999999999 68998876
No 150
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.24 E-value=7.9e-11 Score=95.03 Aligned_cols=71 Identities=34% Similarity=0.695 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|+++.. ..
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KE 62 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HH
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------ch
Confidence 368999999999999999999999999999874 477777777644 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+...+
T Consensus 63 l~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 63 LCKKYGVKSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp HHHHTTCSSSSEEEEE-ETTEEEEE
T ss_pred hhhccCCCCCCEEEEE-ECCcEEEE
Confidence 8999999999999999 77777654
No 151
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.23 E-value=4.8e-11 Score=97.69 Aligned_cols=69 Identities=28% Similarity=0.471 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|++++|.||++||++|+.+.|.+.++++++.+ .+.++.|+++.+. ...
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~v~~~~~~---------------------~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG----------LVQVAAVDCDEDK---------------------NKP 65 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC----------CceEEEEecCccc---------------------cHH
Confidence 478899999999999999999999999998864 3788888887632 267
Q ss_pred HHHhcCcCceeeEEEECCCC
Q 013684 315 LTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G 334 (438)
+++.|+|.++|+++++++++
T Consensus 66 ~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 66 LCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHHcCCCcCCEEEEEeCCC
Confidence 89999999999999997776
No 152
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.22 E-value=7.9e-11 Score=94.48 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++++||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.+ .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence 468999999999999999999999999988864 477888887654 56
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+.+.|+|.++|+++++ ++|+++.+
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEE
Confidence 8899999999999999 58988866
No 153
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.22 E-value=4.3e-11 Score=103.53 Aligned_cols=93 Identities=19% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.+.++++++++. ++.++.|++|.. .++++.|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~------------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF------------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC------------------------HHHHHHcC
Confidence 4679999999999999999999999999998654 388888887755 56677788
Q ss_pred cCc------cceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHH
Q 013684 150 IEG------IPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKL 192 (438)
Q Consensus 150 v~~------~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l 192 (438)
|.. +||++++. +|+.+.+...-.-...+...+.++.+.+
T Consensus 100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~G~~~~~~~~~~~~~~~~~~ 144 (152)
T cd02962 100 VSTSPLSKQLPTIILFQ----GGKEVARRPYYNDSKGRAVPFTFSKENV 144 (152)
T ss_pred ceecCCcCCCCEEEEEE----CCEEEEEEeccccCccccccccccHHHH
Confidence 877 99999997 8887766554333333333344554433
No 154
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.21 E-value=4.5e-11 Score=98.37 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh-hhc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~ 148 (438)
.+++++|.|||+||++|+.+.|.+.++++++++. +.++.|+.|.. ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence 5689999999999999999999999999999642 67777766533 4566 589
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
+|.++||+.++. +|+.
T Consensus 81 ~I~~~PTl~lf~----~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLYY----RSRG 96 (113)
T ss_pred CCcccCEEEEEE----CCcc
Confidence 999999999995 6653
No 155
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-11 Score=98.17 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|.++|+|+|+|||||+.+.|.+.+++.++. ++.++.|++|+ . .++++.|+
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~v~Flkvdvde--~----------------------~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----DVVFLKVDVDE--L----------------------EEVAKEFN 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC----CCEEEEEeccc--C----------------------HhHHHhcC
Confidence 37999999999999999999999999999984 36777777775 2 78899999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|..+||++++. +|+.+.+
T Consensus 72 V~~~PTf~f~k----~g~~~~~ 89 (106)
T KOG0907|consen 72 VKAMPTFVFYK----GGEEVDE 89 (106)
T ss_pred ceEeeEEEEEE----CCEEEEE
Confidence 99999999997 6655543
No 156
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.21 E-value=8.1e-11 Score=97.59 Aligned_cols=72 Identities=8% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCChh--hh--hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 236 GKTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 236 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+++++||+.||++ |+ .+.|.+.+++.++-.. .++.|+.|++|.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~---------------------- 76 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD---------------------- 76 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC----------------------
Confidence 358999999999987 99 7888899888887321 2588888888865
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++++|||.++||++++ ++|+++..
T Consensus 77 -~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 -AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred -HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 789999999999999999 79998763
No 157
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.21 E-value=4.6e-11 Score=96.83 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+|+|+|.|+|+|||+|+.+.|.|.++++++++. +.++.|++|+. .++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence 6899999999999999999999999999999432 67777777644 78899999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|.+.|+++++. +|+-+.
T Consensus 66 I~amPtfvffk----ngkh~~ 82 (114)
T cd02986 66 ISYIPSTIFFF----NGQHMK 82 (114)
T ss_pred ceeCcEEEEEE----CCcEEE
Confidence 99999999888 565543
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.20 E-value=1.5e-10 Score=95.79 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.++++++++. .+.+.+..|+++.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 479999999999999999999999999998753 224667777665332 3678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|+++|+++++ ++|+....
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEAT 93 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCC
Confidence 999999999999999 55554443
No 159
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.20 E-value=8.9e-11 Score=94.63 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.+.+.++++.++.. .++.++.++++.. ..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence 6889999999999999999999999999888753 2466666666543 67
Q ss_pred HHHhcCcCceeeEEEECCCCcE
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i 336 (438)
+++.|+|.++|+++++++++.+
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcc
Confidence 8899999999999999877763
No 160
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.19 E-value=6e-11 Score=98.03 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++. ++.++.|+++. . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~~-----------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAEK-----------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEchh-----------------------h-HH
Confidence 5799999999999999999999999998875 35666666542 2 67
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
++.|+|.++||++++ ++|+.+.+.
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~ 92 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNI 92 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEE
Confidence 899999999999999 899998764
No 161
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.19 E-value=6.5e-11 Score=96.05 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCC--ChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 235 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 235 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
.|.+++|.||++| ||+|..+.|.|.++.++|.+. +.++.|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 4678999999997 999999999999999999754 67888888765
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
.+++..|+|.++||++++ ++|+++.+.
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~~ 99 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGVL 99 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEEE
Confidence 689999999999999999 899999873
No 162
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.18 E-value=8.6e-11 Score=95.43 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|.|||+||++|+.+.|.+.++++++.+ .+.++.|+.|.. ..+++.|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKY------------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCch------------------------HHHHHHcC
Confidence 367999999999999999999999999999843 377777765532 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++.. +|+...+
T Consensus 71 i~~~Pt~~~~~~---g~~~~~~ 89 (104)
T cd03004 71 IRAYPTIRLYPG---NASKYHS 89 (104)
T ss_pred CCcccEEEEEcC---CCCCceE
Confidence 999999999986 5354433
No 163
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.18 E-value=1e-10 Score=95.15 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=55.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.|.++++++++.+.++.+..++.+.. ..+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence 467999999999999999999999999999976553466665554422 56788999
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
|.++|++++++
T Consensus 70 I~~~Pt~~l~~ 80 (104)
T cd03000 70 VRGYPTIKLLK 80 (104)
T ss_pred CccccEEEEEc
Confidence 99999999996
No 164
>PTZ00051 thioredoxin; Provisional
Probab=99.17 E-value=1.3e-10 Score=93.31 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.+++++|+||++||++|+.+.|.+.++++++. ++.++.|+.+.. ..
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SE 62 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HH
Confidence 36799999999999999999999999888654 466777766533 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+++.|++.++|+++++ ++|+++.+.
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~ 87 (98)
T PTZ00051 63 VAEKENITSMPTFKVF-KNGSVVDTL 87 (98)
T ss_pred HHHHCCCceeeEEEEE-eCCeEEEEE
Confidence 8999999999998888 899998763
No 165
>PTZ00062 glutaredoxin; Provisional
Probab=99.17 E-value=3.3e-10 Score=102.61 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=50.0
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
..++++|||+||++|+.+.|.|.++.+++. ++.++.|+.| |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------------------------------cCcc
Confidence 467999999999999999999999999983 3555555221 8999
Q ss_pred ccceEEEecCCCCCCCccccc
Q 013684 152 GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 152 ~~P~~~lvd~~~~~G~v~~~~ 172 (438)
++|+++++. +|+.+.+-
T Consensus 62 ~vPtfv~~~----~g~~i~r~ 78 (204)
T PTZ00062 62 EYGVFEFYQ----NSQLINSL 78 (204)
T ss_pred cceEEEEEE----CCEEEeee
Confidence 999999997 88877663
No 166
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.17 E-value=7.6e-11 Score=99.24 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=64.5
Q ss_pred CC-CEEEEEEeccCCccchhhHHHHH---HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 70 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 70 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+| |+++|+||++||++|+.+.|.+. ++.+.+++ ++.++.|++|.+.... .+ .. .......++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DG-EALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence 57 89999999999999999999885 56666653 3888999888654311 11 00 001227889
Q ss_pred hhcCcCccceEEEecCCCCC-CCcccccc
Q 013684 146 RKFDIEGIPCLVVLQPYDDK-DDATLHDG 173 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~-G~v~~~~~ 173 (438)
..|+|.++|+++++++ + |+++.+..
T Consensus 78 ~~~~v~~~Pt~~~~~~---~gg~~~~~~~ 103 (125)
T cd02951 78 RKYRVRFTPTVIFLDP---EGGKEIARLP 103 (125)
T ss_pred HHcCCccccEEEEEcC---CCCceeEEec
Confidence 9999999999999998 8 78776543
No 167
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.16 E-value=5.7e-10 Score=101.93 Aligned_cols=115 Identities=20% Similarity=0.401 Sum_probs=94.0
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCCC---HH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRD---QT 291 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~~---~~ 291 (438)
+|.+ +.+|+ .+.+..++||+++|+|..+.|| .|..++..|..+.+++. .. ..++++++|++|.+ .+
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 6999 99999 9999999999999999999999 69999999999999988 43 56899999999853 56
Q ss_pred HHHHHHh-cCC--CcccccCCchhHHHHHhcCcCc---------------eeeEEEECCCCcEEEcc
Q 013684 292 SFESYFG-TMP--WLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 ~~~~~~~-~~~--~~~~p~~~d~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~ 340 (438)
.+++|.. ... |..+.-..+...+++++|+|.. ...++++|++|+++...
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 6777877 211 4444444566788888888752 33679999999999874
No 168
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.16 E-value=3e-10 Score=91.21 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.+.+.++.+++.+ ++.++.|+++.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 56899999999999999999999999988764 478888887754 567
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++|+++++ ++|+++.+
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeee
Confidence 889999999999999 78887765
No 169
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.16 E-value=2.2e-10 Score=105.40 Aligned_cols=70 Identities=26% Similarity=0.474 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++++. +.+..|+++.+ ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence 578999999999999999999999999998743 66666665533 578
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++.|+|.++||+++++ +|+++..
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEe
Confidence 9999999999999995 7887755
No 170
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.15 E-value=9.7e-11 Score=95.88 Aligned_cols=67 Identities=33% Similarity=0.516 Sum_probs=57.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|++++|+||++||++|+.+.|.+.++++++.+ .+.++.|+.|.+.. ..+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~----------------------~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKN----------------------KPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCcccc----------------------HHHHHHcC
Confidence 478899999999999999999999999999864 37788887775322 67889999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++|+++++++
T Consensus 72 i~~~Pt~~~~~~ 83 (109)
T cd03002 72 VQGFPTLKVFRP 83 (109)
T ss_pred CCcCCEEEEEeC
Confidence 999999999997
No 171
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.15 E-value=2e-10 Score=92.98 Aligned_cols=75 Identities=25% Similarity=0.462 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+||++||++|+++.|.+.++.+.+++. ..+.++.|+++.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 4678999999999999999999999999998743 24666667666421 267
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|+++++ ++|+++.+
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEE
Confidence 8899999999999888 67887654
No 172
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.15 E-value=9e-11 Score=94.78 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=55.6
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
++|+ ++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+.+.. ..++++|
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~------------------------~~~~~~~ 67 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQE------------------------PGLSGRF 67 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCC------------------------HhHHHHc
Confidence 3565 689999999999999999999999987543 377777765533 5678899
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
+|.++|+++++ + +|++
T Consensus 68 ~i~~~Pt~~~~-~---~g~~ 83 (101)
T cd02994 68 FVTALPTIYHA-K---DGVF 83 (101)
T ss_pred CCcccCEEEEe-C---CCCE
Confidence 99999999998 4 7764
No 173
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.14 E-value=8.5e-11 Score=94.92 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=56.0
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
+++|+||++||++|+.+.|.|.+++++++....++.++.|+.+.. ..+++.|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence 499999999999999999999999999976323477776655432 57788999999
Q ss_pred cceEEEecCCCCCCCcc
Q 013684 153 IPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 153 ~P~~~lvd~~~~~G~v~ 169 (438)
+|+++++. +|..+
T Consensus 74 ~Pt~~~~~----~g~~~ 86 (102)
T cd03005 74 YPTLLLFK----DGEKV 86 (102)
T ss_pred CCEEEEEe----CCCee
Confidence 99999995 66654
No 174
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.13 E-value=1.9e-10 Score=94.41 Aligned_cols=67 Identities=15% Similarity=0.419 Sum_probs=56.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 148 (438)
+||+++|.||++||++|+.+.|.|.++++.+++. ++.++.|+.|.+. ..++. .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~-----------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ-----------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc-----------------------hhhHHhhc
Confidence 4789999999999999999999999999999854 3888888777421 34454 59
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
++..+|+++++++
T Consensus 75 ~v~~~Pti~~f~~ 87 (109)
T cd02993 75 QLKSFPTILFFPK 87 (109)
T ss_pred CCCcCCEEEEEcC
Confidence 9999999999986
No 175
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.12 E-value=2.8e-10 Score=93.15 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC---CCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|+.|.. ..+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence 46899999999999999999999999999886531 1355555555533 67899
Q ss_pred hcCcCccceEEEecCCCCCCCc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v 168 (438)
+|+|.++|+++++. +|.+
T Consensus 73 ~~~v~~~Ptl~~~~----~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLFR----NGMM 90 (108)
T ss_pred hCCCCcCCEEEEEe----CCcC
Confidence 99999999999995 6763
No 176
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.12 E-value=2.5e-09 Score=110.06 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=106.0
Q ss_pred CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC--ccceEEEe
Q 013684 82 WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLVVL 159 (438)
Q Consensus 82 wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~lv 159 (438)
...+|......|.++++++++. .+.++.+ | ......+++.+++. .+|.++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~--d----------------------~~~~~~~~~~~~~~~~~~P~~vi~ 299 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK--FVNFAVA--D----------------------EEDFGRELEYFGLKAEKFPAVAIQ 299 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC--eEEEEEe--c----------------------HHHhHHHHHHcCCCccCCceEEEE
Confidence 3344667777777777766431 2443333 2 22226678888887 69999999
Q ss_pred cCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCC---Ccc-CCCCCceeecc-cc
Q 013684 160 QPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG---YLL-GHPPDEKVPVS-SL 234 (438)
Q Consensus 160 d~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~---f~l-~~~g~~~~~l~-~~ 234 (438)
+. +|...+... ....+.+.+.++.............. ..+.|. -.+ ...|. .+.-. .-
T Consensus 300 ~~---~~~~~y~~~----------~~~~~~~~i~~fi~~~~~g~~~~~~~---se~~p~~~~~~v~~l~~~-~f~~~v~~ 362 (462)
T TIGR01130 300 DL---EGNKKYPMD----------QEEFSSENLEAFVKDFLDGKLKPYLK---SEPIPEDDEGPVKVLVGK-NFDEIVLD 362 (462)
T ss_pred eC---CcccccCCC----------cCCCCHHHHHHHHHHHhcCCCCeeec---cCCCCccCCCccEEeeCc-CHHHHhcc
Confidence 98 662221110 01244455555444433222111111 111111 112 34444 33221 12
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.++.++|+||++||++|+.+.|.+.++++.+++. ..++.++.|+++.+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n~------------------------ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAND------------------------ 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCCc------------------------
Confidence 4789999999999999999999999999999852 125778888776431
Q ss_pred HHHhcCcCceeeEEEECCCCc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~ 335 (438)
+.. |++.++|+++++.++++
T Consensus 412 ~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 412 VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCC-CCccccCEEEEEeCCCC
Confidence 223 89999999999965554
No 177
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.12 E-value=3.8e-10 Score=94.38 Aligned_cols=80 Identities=18% Similarity=0.430 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCC-chhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~-d~~~ 313 (438)
.|+.++|+|+++|||+|+.+.|.|.++.++. ++.|..|++|.+.. ..... +...
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~ 76 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLT 76 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHH
Confidence 3678999999999999999999999998873 35689999885420 00000 0113
Q ss_pred HHHHhc----CcCceeeEEEECCCCcEEEcc
Q 013684 314 ELTKYF----DVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 314 ~l~~~~----~v~~~P~~~lid~~G~i~~~~ 340 (438)
++.+.| +|.++||++++ ++|+.+.+.
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence 445554 46679999999 999998873
No 178
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.12 E-value=9.1e-11 Score=111.62 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=68.9
Q ss_pred CEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHH
Q 013684 62 EEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 141 (438)
Q Consensus 62 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (438)
+...++++.|+++||+||++||++|+.+.|.|.++++++ | +.|++|++|.+... . ++..+.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~------~-----fp~~~~d-- 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP------G-----FPNARPD-- 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc------c-----CCcccCC--
Confidence 346788899999999999999999999999999999987 2 88999999865431 1 2211222
Q ss_pred HHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 142 KALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 142 ~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..+.+.|+|.++|+++|+++ +|..+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~---~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADP---DPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEEC---CCCEE
Confidence 46789999999999999997 66544
No 179
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-10 Score=102.03 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=97.3
Q ss_pred HHhhccchhHHHHHhhcccccCC-CCC---EEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEE
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKE-IGE---EVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 111 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~-~g~---~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 111 (438)
+++|..+|+|+ .... .|. +++++++.||+++|+|| +..-+.|..++..+++.|++|+++| ++|++
T Consensus 3 ~lIg~~aP~F~--------~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVig 72 (194)
T COG0450 3 SLIGKKAPDFT--------ANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIG 72 (194)
T ss_pred cccCCcCCCcE--------EEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEE
Confidence 46899999999 5555 664 89999998999999999 7888999999999999999999987 99999
Q ss_pred EecCC--CHHHHHHhHhcCC-c--ccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCccccc
Q 013684 112 VSSDE--DLNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 112 vs~D~--~~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+|+|. +..+|.+...+.. . ..+|. -.|.+.++++.||+. +...+|+||+ +|.+...-
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~~ 140 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHIL 140 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEEE
Confidence 99995 5566666654332 2 33333 233348999999984 5678999999 99887553
No 180
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.8e-11 Score=117.68 Aligned_cols=133 Identities=24% Similarity=0.396 Sum_probs=87.7
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.++.+.+++. +.+..|.++. ...+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~----------~~~~~vd~~~-----------------------~~~~ 93 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK----------VKIGAVDCDE-----------------------HKDL 93 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCc----------eEEEEeCchh-----------------------hHHH
Confidence 568999999999999999999999999998754 4555554443 3789
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCCc-ccccccc--ccc---cc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-EFHIGHR--HEL---NL 389 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~~~~~--~~~---~~ 389 (438)
++.|+|.++||+.++.++.+++...+. ...+...+.+.+.++......... +...... +.. .-
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 162 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSGP-----------RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSD 162 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccCc-----------ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccC
Confidence 999999999999999666345544321 112333333444444333333223 3222221 111 11
Q ss_pred ccccCCCCCcccCccCCCCCcee
Q 013684 390 VSEGTGGGPFICCDCDEQGSGWA 412 (438)
Q Consensus 390 ~~~~~~~~~~~c~~C~~~~~~w~ 412 (438)
..|++...+|||.||+++.+.|.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred cceEEEEeccccHHhhhcChHHH
Confidence 23567778999999999988884
No 181
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.11 E-value=1.1e-09 Score=91.43 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=59.2
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-+||+|+|+|+++||++|+.+.... .++.+.+.+ ++.+|.|+.+...+..+.+.
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~~----------- 69 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIYM----------- 69 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHHH-----------
Confidence 445689999999999999999987732 245555543 46666666654432221111
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEEEccc
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 341 (438)
......||+.++|+++++|++|++++..+
T Consensus 70 ----~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 70 ----NAAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred ----HHHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 22334679999999999999999998753
No 182
>PTZ00062 glutaredoxin; Provisional
Probab=99.11 E-value=1.7e-10 Score=104.44 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=78.6
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
..++++|||+||++|+.+.|.+.++.++|. ++.++-|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~~~F~~V~~d----------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------SLEFYVVNLA----------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------CcEEEEEccc-----------------------------
Confidence 357999999999999999999999999885 3455555422
Q ss_pred HhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccCCCc-----cccccccccccccc
Q 013684 317 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-----EFHIGHRHELNLVS 391 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~ 391 (438)
|+|.++|+++++ ++|+++.+ ..|.++ .+|...+.+.....+.. ....-..++.++
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvv-- 117 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILL-- 117 (204)
T ss_pred --cCcccceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEE--
Confidence 899999999999 89999988 334433 66777776665543322 222333466666
Q ss_pred ccCCCCC---cccCccCCCCCc
Q 013684 392 EGTGGGP---FICCDCDEQGSG 410 (438)
Q Consensus 392 ~~~~~~~---~~c~~C~~~~~~ 410 (438)
.+++. |+|+.|++....
T Consensus 118 --f~Kg~~~~p~C~~C~~~k~~ 137 (204)
T PTZ00062 118 --FMKGSKTFPFCRFSNAVVNM 137 (204)
T ss_pred --EEccCCCCCCChhHHHHHHH
Confidence 56654 578888754433
No 183
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.11 E-value=4e-10 Score=91.54 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=59.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+||+++|+||++||++|+.+.|.+ .++.+.+++ ++.++.|+++.+.. ....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~--------------------~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP--------------------EITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH--------------------HHHHHHH
Confidence 579999999999999999999887 577777754 38888887764321 1268889
Q ss_pred hcCcCccceEEEecCCCCCCCcccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.|++.++|+++++++ .+|+.+.+
T Consensus 67 ~~~i~~~Pti~~~~~--~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGP--GGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECC--CCCCCCcc
Confidence 999999999999984 24665543
No 184
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.11 E-value=2.2e-10 Score=97.23 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=59.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|.|||+||+||+.+.|.|.++++++++. +.|+-|++|+. ++++..|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence 5789999999999999999999999999998553 67788888755 78899999
Q ss_pred cCccceEEEecCCCCCCC-cccc
Q 013684 150 IEGIPCLVVLQPYDDKDD-ATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~-v~~~ 171 (438)
|...|+++++-+ +|. .+.+
T Consensus 75 I~~~~t~~~ffk---~g~~~vd~ 94 (142)
T PLN00410 75 LYDPCTVMFFFR---NKHIMIDL 94 (142)
T ss_pred ccCCCcEEEEEE---CCeEEEEE
Confidence 998888774544 776 4444
No 185
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.10 E-value=2e-10 Score=95.01 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCCEEEEEEec-------CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
+|++++|.||| +|||+|+.+.|.+.++.+++++ ++.++.|++|... +
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 57899999999 9999999999999999998863 3788888887542 1
Q ss_pred CCchhHHHHHhcCcC-ceeeEEEECCCCcEEEc
Q 013684 308 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~-~~P~~~lid~~G~i~~~ 339 (438)
-.+....+...|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 112246788999998 99999999655555543
No 186
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-10 Score=107.53 Aligned_cols=71 Identities=20% Similarity=0.406 Sum_probs=63.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+-++|+|+||++||++|+..+|.|.++..+++.+ |.+..|++|.. ..+..+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence 4479999999999999999999999999999765 88888887755 78899999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|+++|++|+|. +|+.+..
T Consensus 95 iqsIPtV~af~----dGqpVdg 112 (304)
T COG3118 95 VQSIPTVYAFK----DGQPVDG 112 (304)
T ss_pred cCcCCeEEEee----CCcCccc
Confidence 99999999998 8887744
No 187
>PRK09381 trxA thioredoxin; Provisional
Probab=99.09 E-value=3.1e-10 Score=93.01 Aligned_cols=72 Identities=21% Similarity=0.471 Sum_probs=60.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++.+ ++.++.++.|.. ..+++.|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN------------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCC------------------------hhHHHhCC
Confidence 368999999999999999999999999999864 377888877644 45678899
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+..+|+++++. +|+++.+.
T Consensus 73 v~~~Pt~~~~~----~G~~~~~~ 91 (109)
T PRK09381 73 IRGIPTLLLFK----NGEVAATK 91 (109)
T ss_pred CCcCCEEEEEe----CCeEEEEe
Confidence 99999999995 88776543
No 188
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.08 E-value=5.3e-10 Score=92.50 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=55.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.+.++++++++....+.+..|+.+.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 4799999999999999999999999999997643235665555433222 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|+++++.+
T Consensus 77 ~~~Pt~~lf~~ 87 (114)
T cd02992 77 TGYPTLRYFPP 87 (114)
T ss_pred CCCCEEEEECC
Confidence 99999999985
No 189
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.08 E-value=2.2e-10 Score=105.78 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=55.8
Q ss_pred cCCCEEEEEEec---CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 234 LVGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 234 ~~gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
.++...++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~-------------------- 65 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE-------------------- 65 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc--------------------
Confidence 344455666777 999999999999999988874 3566777776442
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
..++++.|+|.++||++++ ++|+.+
T Consensus 66 -~~~l~~~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 66 -DKEEAEKYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred -cHHHHHHcCCCccCEEEEE-eCCeee
Confidence 3789999999999999999 567665
No 190
>PRK10996 thioredoxin 2; Provisional
Probab=99.08 E-value=3.7e-10 Score=96.85 Aligned_cols=71 Identities=24% Similarity=0.504 Sum_probs=59.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++|+++|+||++||++|+.+.|.|.++++++.+ ++.++.|+.|.. ..+++.|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAE------------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCC------------------------HHHHHhcC
Confidence 479999999999999999999999999988754 377777765533 67889999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|++++++ +|+++.+
T Consensus 104 V~~~Ptlii~~----~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIFK----NGQVVDM 121 (139)
T ss_pred CCccCEEEEEE----CCEEEEE
Confidence 99999998885 8877654
No 191
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-09 Score=90.67 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC-------
Q 013684 216 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------- 287 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------- 287 (438)
.-||++ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++ +++|+++.++
T Consensus 5 ~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QEP 73 (162)
T COG0386 5 IYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQEP 73 (162)
T ss_pred cccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCCC
Confidence 457888 99999 9999999999999999999999877 445589999999987 9999999986
Q ss_pred CCHHHHHHHHhcCCCcccccCCc------hhHHHHHh----cC----cCce---eeEEEECCCCcEEEccc
Q 013684 288 RDQTSFESYFGTMPWLALPFGDP------TIKELTKY----FD----VQGI---PCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d------~~~~l~~~----~~----v~~~---P~~~lid~~G~i~~~~~ 341 (438)
.+.+++++|++..-..+||+... ....|.+. .. -..+ =+-||||++|+|+.|..
T Consensus 74 g~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 74 GSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred CCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 35678999998666688887332 11222222 21 1111 17799999999999964
No 192
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.07 E-value=1.2e-09 Score=88.19 Aligned_cols=65 Identities=23% Similarity=0.460 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.++++.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~id~~~~-----------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI----------VKVGAVDADVH-----------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------ceEEEEECcch-----------------------HHH
Confidence 467999999999999999999999999988643 77888877643 568
Q ss_pred HHhcCcCceeeEEEECCC
Q 013684 316 TKYFDVQGIPCLVIIGPE 333 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~ 333 (438)
++.|+|.++|++++++.+
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 899999999999999644
No 193
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.07 E-value=8.1e-10 Score=89.46 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|.||++||++|+.+.|.+.+++++++.. +++.++.|+++.. ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence 568999999999999999999999999998732 3577777777652 1578
Q ss_pred HHhcCcCceeeEEEECCCCcEEE
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
++.|+|.++|++++++++|+...
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPV 90 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCcc
Confidence 99999999999999977764443
No 194
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.07 E-value=1.5e-09 Score=98.57 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=94.6
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCCh-hhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CHHH
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS 292 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~~~ 292 (438)
.|+| +++|+ .+.-.++.||++|++|..+.|| .|..++..|..+.+++.++. +-.+.-|+|++|. +.+.
T Consensus 121 pF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~------~~~~~PlFIsvDPeRD~~~~ 193 (280)
T KOG2792|consen 121 PFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP------GLPPVPLFISVDPERDSVEV 193 (280)
T ss_pred ceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccC------CCCccceEEEeCcccCCHHH
Confidence 5999 99999 9999999999999999999999 69999999999999988651 2334478999986 6778
Q ss_pred HHHHHhcCC--CcccccCCchhHHHHHhcCcC--cee-------------eEEEECCCCcEEEcccc
Q 013684 293 FESYFGTMP--WLALPFGDPTIKELTKYFDVQ--GIP-------------CLVIIGPEGKTVTKQGR 342 (438)
Q Consensus 293 ~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~--~~P-------------~~~lid~~G~i~~~~~~ 342 (438)
+++|+++.. .+-+.-.-+....++++|.|- .-| .+|||||+|+.+...|+
T Consensus 194 ~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 194 VAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred HHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 999998755 234444555677889999872 112 57999999999987653
No 195
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.07 E-value=3e-10 Score=94.35 Aligned_cols=77 Identities=21% Similarity=0.386 Sum_probs=56.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
.+..++|+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+.+ .+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~-----------------------~~~ 67 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE-----------------------PKD 67 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC-----------------------chh
Confidence 34457899999999999999999999999976654432 2345556654321 122
Q ss_pred hhcCcCc--cceEEEecCCCCCCCcccc
Q 013684 146 RKFDIEG--IPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 146 ~~~~v~~--~P~~~lvd~~~~~G~v~~~ 171 (438)
..|++.+ +|+++++++ +|+++.+
T Consensus 68 ~~~~~~g~~vPt~~f~~~---~Gk~~~~ 92 (117)
T cd02959 68 EEFSPDGGYIPRILFLDP---SGDVHPE 92 (117)
T ss_pred hhcccCCCccceEEEECC---CCCCchh
Confidence 4577765 999999999 9988765
No 196
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.06 E-value=4.7e-10 Score=90.82 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|+||++||++|+.+.|.+.++++.+++.+ .+.++.++.+.+.. ..+++.|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~----------------------~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH----------------------DALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc----------------------HHHHHhCC
Confidence 46799999999999999999999999999997643 35666555543211 67889999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+.++|+++++. +|+++.
T Consensus 73 i~~~Pt~~~~~----~g~~~~ 89 (104)
T cd02997 73 VKGFPTFKYFE----NGKFVE 89 (104)
T ss_pred CccccEEEEEe----CCCeeE
Confidence 99999988876 666543
No 197
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.06 E-value=3.4e-10 Score=93.18 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=65.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+||+++++||++|||+|+.+.+.+.+..+-......++.++.++++++...........+. .. ......++.+.|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHcC
Confidence 6899999999999999999999888755432222124888999888766554444443221 11 1223478999999
Q ss_pred cCccceEEEecCCCCCCCcccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
|.++|+++++|+ +|+++.+
T Consensus 80 v~gtPt~~~~d~---~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDK---DGKIVYR 98 (112)
T ss_dssp --SSSEEEECTT---TSCEEEE
T ss_pred CCccCEEEEEcC---CCCEEEE
Confidence 999999999999 9997754
No 198
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.2e-10 Score=101.46 Aligned_cols=91 Identities=22% Similarity=0.391 Sum_probs=70.0
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
--+|.|+|+|+|.||+||+..+|.++.+.++|++ ..++-|++|. .+
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-----------aVFlkVdVd~-----------------------c~ 64 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-----------AVFLKVDVDE-----------------------CR 64 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-----------cEEEEEeHHH-----------------------hh
Confidence 3468999999999999999999999999999963 4555555553 36
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
..+..+||+++||++++ .+|+-+.. ..|+++ ..|++.+.+.+...
T Consensus 65 ~taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 65 GTAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTS 109 (288)
T ss_pred chhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccC
Confidence 67888999999999999 88877765 345444 66677776655443
No 199
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.05 E-value=1.1e-09 Score=97.35 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|+||++||++|+.+.|.|.+++++|. .+.++-|+++. ..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d~------------------------~~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRASA------------------------TGA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEeccc------------------------hhh
Confidence 4599999999999999999999999998875 36677776652 147
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
...|+|.++||++++ ++|+++.+.
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~~ 151 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGNF 151 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEEE
Confidence 788999999999999 899998764
No 200
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.04 E-value=8.1e-10 Score=88.59 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=60.0
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++++||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.. .++.+.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~------------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDED------------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCC------------------------HHHHHHCC
Confidence 568999999999999999999999999999854 377777766643 56788999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++|++++++ +|+++.+.
T Consensus 65 v~~vPt~~i~~----~g~~v~~~ 83 (97)
T cd02949 65 IMGTPTVQFFK----DKELVKEI 83 (97)
T ss_pred CeeccEEEEEE----CCeEEEEE
Confidence 99999999995 77776543
No 201
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.04 E-value=5.4e-10 Score=90.72 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccC--CccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 70 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 70 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
.|..++|+||++| ||+|+.+.|.|.++++++.+. +.++.|+.|.. ..++..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence 5678999999997 999999999999999998654 66777766644 689999
Q ss_pred cCcCccceEEEecCCCCCCCccccc
Q 013684 148 FDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 148 ~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|+|.++||++++. +|+++.+.
T Consensus 79 f~V~sIPTli~fk----dGk~v~~~ 99 (111)
T cd02965 79 FGVLRTPALLFFR----DGRYVGVL 99 (111)
T ss_pred cCCCcCCEEEEEE----CCEEEEEE
Confidence 9999999999998 88877654
No 202
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.03 E-value=2.1e-09 Score=88.77 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=53.6
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
++.++|+||++||++|+.+.|.+.++.+.+ + .+.++.|+.|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 456889999999999999999999998775 2 478888888754 578
Q ss_pred HHhcCcCceeeEEEECC
Q 013684 316 TKYFDVQGIPCLVIIGP 332 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~ 332 (438)
++.|+|.++||+++++.
T Consensus 68 ~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 68 AEKYGVERVPTTIFLQD 84 (113)
T ss_pred HHHcCCCcCCEEEEEeC
Confidence 89999999999999954
No 203
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.03 E-value=9.1e-10 Score=88.04 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=57.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++.+++. .++.++.++.+.. .+++++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~~------------------------~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEEL------------------------PEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEccccC------------------------HHHHHhcCC
Confidence 6899999999999999999999999999972 2366666644322 678899999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|++++++ +|+++.+.
T Consensus 67 ~~~Pt~~~~~----~g~~~~~~ 84 (97)
T cd02984 67 TAVPTFVFFR----NGTIVDRV 84 (97)
T ss_pred ccccEEEEEE----CCEEEEEE
Confidence 9999999996 78776553
No 204
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.03 E-value=1.1e-09 Score=90.34 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|++|.. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~------------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKA------------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccC------------------------HHHHHHCC
Confidence 35799999999999999999999999998873 367777766644 67899999
Q ss_pred cCccceEEEecCCCCCCCccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
|..+|+++++. +|+.+.+.
T Consensus 73 v~~vPt~l~fk----~G~~v~~~ 91 (113)
T cd02989 73 IKVLPTVILFK----NGKTVDRI 91 (113)
T ss_pred CccCCEEEEEE----CCEEEEEE
Confidence 99999999998 78777554
No 205
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.03 E-value=5.9e-10 Score=89.76 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|.||++||++|+.+.|.|.++++.++..+ ++.++.++.|.. ..+++.|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~------------------------~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE------------------------KDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch------------------------HHHHHhCC
Confidence 68999999999999999999999999999986642 466665544422 67889999
Q ss_pred cCccceEEEecCCCCCCC
Q 013684 150 IEGIPCLVVLQPYDDKDD 167 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~ 167 (438)
+.++|+++++++ ++.
T Consensus 67 i~~~P~~~~~~~---~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPK---GKK 81 (102)
T ss_pred CCcCCEEEEecC---CCc
Confidence 999999999997 654
No 206
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.02 E-value=7.5e-10 Score=88.46 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|.||++||++|+.+.|.+.++++.++.. .++.++.|+++.+ ..
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------ND 62 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HH
Confidence 3458999999999999999999999999988511 2577877777643 67
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.|+|.++|++++++++|+.+.+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 63 LCSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHHhCCCCCCCEEEEEcCCCccccc
Confidence 8999999999999999877644433
No 207
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.01 E-value=5.9e-10 Score=92.16 Aligned_cols=80 Identities=18% Similarity=0.406 Sum_probs=63.0
Q ss_pred CCCEEEEEEec-------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
+|++|+|.||| +|||+|+.+.|.|.++.+++++ ++.++.|++|.... |. +. ..
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~----------w~-----d~--~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPY----------WR-----DP--NN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCccc----------cc-----Cc--ch
Confidence 57899999999 9999999999999999999863 37788888875431 00 11 26
Q ss_pred HHhhhcCcC-ccceEEEecCCCCCCCccccc
Q 013684 143 ALNRKFDIE-GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 143 ~l~~~~~v~-~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.+...|+|. ++||+++++. .++++..+
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~---~~~l~~~~ 107 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKT---PQRLVEDE 107 (119)
T ss_pred hhHhccCcccCCCEEEEEcC---Cceecchh
Confidence 888999998 9999999986 55665444
No 208
>PTZ00051 thioredoxin; Provisional
Probab=99.01 E-value=1.1e-09 Score=87.85 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+.. ..+++.|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDEL------------------------SEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcch------------------------HHHHHHCC
Confidence 46899999999999999999999999998753 355655544321 67889999
Q ss_pred cCccceEEEecCCCCCCCcccccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+.++|+++++. +|+++.+..
T Consensus 69 v~~~Pt~~~~~----~g~~~~~~~ 88 (98)
T PTZ00051 69 ITSMPTFKVFK----NGSVVDTLL 88 (98)
T ss_pred CceeeEEEEEe----CCeEEEEEe
Confidence 99999988774 888775543
No 209
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.00 E-value=1.2e-09 Score=88.08 Aligned_cols=70 Identities=26% Similarity=0.632 Sum_probs=59.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+.+.. ..+++.|+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~ 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDEN------------------------KELCKKYG 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhcc------------------------chhhhccC
Confidence 369999999999999999999999999999876 377777766533 68899999
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|.++|+++++. +|+...
T Consensus 69 v~~~Pt~~~~~----~g~~~~ 85 (103)
T PF00085_consen 69 VKSVPTIIFFK----NGKEVK 85 (103)
T ss_dssp CSSSSEEEEEE----TTEEEE
T ss_pred CCCCCEEEEEE----CCcEEE
Confidence 99999999998 665554
No 210
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.98 E-value=2e-09 Score=87.18 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=55.4
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|.||++||++|+.+.|.+.++++.++.. .++.++.++.+.. . ..+++.|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-~----------------------~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-N----------------------KDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-c----------------------hhhHHhCCC
Confidence 579999999999999999999999999998733 2466666655431 1 678999999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 74 ~~~P~~~~~~~ 84 (105)
T cd02998 74 SGFPTLKFFPK 84 (105)
T ss_pred CCcCEEEEEeC
Confidence 99999999996
No 211
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2e-09 Score=90.93 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=94.0
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCC-EEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
.+|+.+|||+| |.||+ .++|.++.|+ +|+++|| +...|.|.+..-.+..-|++++.. +.+|+++|.|
T Consensus 64 ~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS~D 133 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLSGD 133 (211)
T ss_pred ecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeeccC
Confidence 46899999999 99999 9999999985 8888888 456788999999999999999865 7899999998
Q ss_pred CCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCcee-------eEEEECCCC
Q 013684 288 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEG 334 (438)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P-------~~~lid~~G 334 (438)
+....++|..+.+ +.+..+.|..+++.+.+|+.+.| ..++++++|
T Consensus 134 -~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 134 -DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred -chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 4456677776665 67777899999999999997655 668887775
No 212
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.97 E-value=4.6e-09 Score=81.13 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=51.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
.+..||++||++|+...|.+.+++++++. .+.++.|+.+.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46689999999999999999999988864 377888887654 456788
Q ss_pred cCcCceeeEEEECCCCcEE
Q 013684 319 FDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~ 337 (438)
||+.++|++++ +|+.+
T Consensus 49 ~~v~~vPt~~~---~g~~~ 64 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDVE 64 (82)
T ss_pred cCCccCCEEEE---CCEEE
Confidence 99999999875 66643
No 213
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.8e-09 Score=87.79 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=93.0
Q ss_pred cCCCCCcc----CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 214 NHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 214 ~~~~~f~l----~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.++|+|.- +..-+ .+++++++||+|++.|| ..+.-.|..+.-.+...+.+|++. |-+|+++|+|+
T Consensus 8 ~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~DS 77 (196)
T KOG0852|consen 8 KPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTDS 77 (196)
T ss_pred CCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEeccc
Confidence 34577763 55556 89999999999999999 457778999999999999999976 89999999995
Q ss_pred CH--HHHHHHHhcCC---CcccccCCchhHHHHHhcCc----C--ceeeEEEECCCCcEEEcc
Q 013684 289 DQ--TSFESYFGTMP---WLALPFGDPTIKELTKYFDV----Q--GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 289 ~~--~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v----~--~~P~~~lid~~G~i~~~~ 340 (438)
.- -+|...-.+.+ -+++|++.|.+.++++.||| . .+-.+++||++|.++...
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 42 23444444443 35699999999999999999 3 455889999999998754
No 214
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.96 E-value=1.9e-09 Score=89.03 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+ . ..+++.|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~------------------------~-~~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAE------------------------K-AFLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEch------------------------h-hHHHHhcCC
Confidence 5899999999999999999999999999873 2556655443 1 177889999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|+++++. +|+.+.+.
T Consensus 75 ~~~Pt~~~f~----~G~~v~~~ 92 (113)
T cd02957 75 KVLPTLLVYK----NGELIDNI 92 (113)
T ss_pred CcCCEEEEEE----CCEEEEEE
Confidence 9999999998 78777554
No 215
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.96 E-value=2.6e-09 Score=108.03 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=58.3
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.++++++|+|||+||++|+.+.|.+.++++++++. ++.|+.|++|.+. ..
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KE 418 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cH
Confidence 36789999999999999999999999999999754 5888999888652 12
Q ss_pred HHHHhcCcCceeeEEEECCCC
Q 013684 314 ELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G 334 (438)
...+.|+|.++||++++ ++|
T Consensus 419 ~~~~~~~I~~~PTii~F-k~g 438 (463)
T TIGR00424 419 FAKQELQLGSFPTILFF-PKH 438 (463)
T ss_pred HHHHHcCCCccceEEEE-ECC
Confidence 33478999999999999 444
No 216
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.96 E-value=1.4e-09 Score=100.06 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=56.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|+.+.. ..++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~------------------------~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA------------------------LNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc------------------------HHHHHHcCC
Confidence 579999999999999999999999999998642 55555543322 678899999
Q ss_pred CccceEEEecCCCCCCCccc
Q 013684 151 EGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~ 170 (438)
.++|++++++ +|+++.
T Consensus 105 ~~~PTl~~f~----~G~~v~ 120 (224)
T PTZ00443 105 KGYPTLLLFD----KGKMYQ 120 (224)
T ss_pred CcCCEEEEEE----CCEEEE
Confidence 9999999998 676553
No 217
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.95 E-value=2.1e-09 Score=96.98 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++|+|.||++||++|+.+.|.|.+++++|. .+.++-|+++. .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad~--------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIISTQ--------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhHH--------------------------h
Confidence 4699999999999999999999999999885 35677776641 1
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
...|++.++||++++ ++|+++.+.
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~i 168 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQF 168 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEE
Confidence 467999999999999 999999874
No 218
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.94 E-value=7.7e-09 Score=94.50 Aligned_cols=116 Identities=17% Similarity=0.358 Sum_probs=93.7
Q ss_pred cccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHh-cCCCCEEEEEEecC---CCHHHHHHhHh-
Q 013684 53 RMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSD---EDLNAFNNYRA- 126 (438)
Q Consensus 53 ~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~iv~vs~D---~~~~~~~~~~~- 126 (438)
++.+.+.+|+.+++.+++||+++|+|..+.|| .|..++..|.++.+++. ..+.++++++|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 34488999999999999999999999999999 99999999999999998 66778999999998 46677778877
Q ss_pred cC--CcccccCCChHHHHHHhhhcCcC---------------ccceEEEecCCCCCCCccccc
Q 013684 127 CM--PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 127 ~~--~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.. .|..+... .....++++.|+|. +...++++|+ +|++....
T Consensus 129 ~~~~~~~~ltg~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~~ 187 (207)
T COG1999 129 NFDPRWIGLTGT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGTY 187 (207)
T ss_pred cCCCCeeeeeCC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEEe
Confidence 22 25555553 45557888887775 3456788998 99887554
No 219
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.94 E-value=3e-09 Score=85.96 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=54.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|.||++||++|+.+.|.|.++++++... +.++.++.+.. ..++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~------------------------~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH------------------------QSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch------------------------HHHHHHCCC
Confidence 567999999999999999999999999998642 66776655432 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 71 ~~~P~~~~~~~ 81 (103)
T cd03001 71 RGFPTIKVFGA 81 (103)
T ss_pred CccCEEEEECC
Confidence 99999999985
No 220
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.92 E-value=3e-09 Score=88.22 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCEEEEEEeccCCcc--ch--hhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
+.+++++||++||++ |+ .+.|.|.+++.++-..+ ++.++.|++|.. .++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~------------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD------------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC------------------------HHHHH
Confidence 359999999999987 99 77888888888873222 388888877755 78999
Q ss_pred hcCcCccceEEEecCCCCCCCccc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
+|+|.++||++++. +|+++.
T Consensus 82 ~~~I~~iPTl~lfk----~G~~v~ 101 (120)
T cd03065 82 KLGLDEEDSIYVFK----DDEVIE 101 (120)
T ss_pred HcCCccccEEEEEE----CCEEEE
Confidence 99999999999997 787654
No 221
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.92 E-value=6.8e-09 Score=86.74 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=59.2
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|.|+.+..++..+. ....
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~----------------~~~~ 71 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKI----------------YMNA 71 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHH----------------HHHH
Confidence 344689999999999999999987633 245555533 377777776654331111 1122
Q ss_pred HhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
....|++.++|+++++++ +|++++...
T Consensus 72 ~~~~~~~~G~Pt~vfl~~---~G~~~~~~~ 98 (124)
T cd02955 72 AQAMTGQGGWPLNVFLTP---DLKPFFGGT 98 (124)
T ss_pred HHHhcCCCCCCEEEEECC---CCCEEeeee
Confidence 333679999999999999 999987754
No 222
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.91 E-value=4.1e-09 Score=88.10 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=58.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
.|+.++|+|+++|||+|+.+.|.|.++.++. +..++.|++|.+.. ....+.....++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 4688999999999999999999999998872 26689999885431 00111111245666655
Q ss_pred ----cCccceEEEecCCCCCCCccccc
Q 013684 150 ----IEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 ----v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.++||++++. +|+.+.+.
T Consensus 84 i~~~i~~~PT~v~~k----~Gk~v~~~ 106 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT----DGKQVSVR 106 (122)
T ss_pred CcccCCCCCEEEEEe----CCeEEEEE
Confidence 55699999998 88777654
No 223
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.91 E-value=4.6e-09 Score=84.25 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=58.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+.. ..++++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDEN------------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHcCC
Confidence 57999999999999999999999999988753 377887766543 567889999
Q ss_pred CccceEEEecCCCCCCCcccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~ 171 (438)
..+|+++++. +|++...
T Consensus 67 ~~~P~~~~~~----~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLFK----NGKEVDR 83 (101)
T ss_pred CcCCEEEEEe----CCcEeee
Confidence 9999999995 7765543
No 224
>PLN02309 5'-adenylylsulfate reductase
Probab=98.91 E-value=6.2e-09 Score=105.22 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++++++|+|||+||++|+.+.|.+.+++++|.+. ++.|+.|++|.+. ..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence 6799999999999999999999999999998754 6888888888331 45
Q ss_pred HHH-hcCcCceeeEEEECCC
Q 013684 315 LTK-YFDVQGIPCLVIIGPE 333 (438)
Q Consensus 315 l~~-~~~v~~~P~~~lid~~ 333 (438)
++. .|+|.++||++++.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 564 6999999999999443
No 225
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.89 E-value=2.9e-09 Score=85.03 Aligned_cols=67 Identities=18% Similarity=0.375 Sum_probs=56.1
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++++++|.||++||++|+.+.|.+.++++.++.. .++.++.++.+.. ..+++.|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~------------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN------------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch------------------------HHHHHhCC
Confidence 4569999999999999999999999999998622 2477776665532 68899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|..+|+++++++
T Consensus 69 i~~~Pt~~~~~~ 80 (101)
T cd02961 69 VRGYPTIKLFPN 80 (101)
T ss_pred CCCCCEEEEEcC
Confidence 999999999997
No 226
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.88 E-value=7.9e-09 Score=86.39 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=68.5
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-+||+++|+|++.||++|+.+...+- ++.+... + ++.+|-+..|.... +
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~---------~Fv~V~l~~d~td~------------~---- 72 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-E---------DFIMLNLVHETTDK------------N---- 72 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-h---------CeEEEEEEeccCCC------------C----
Confidence 3456899999999999999999887643 2333332 2 35444444442210 0
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
.. ..| .++||++++|++|+++.+- ...++...|...+.+++.|.+.+++.+
T Consensus 73 ----~~---~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 73 ----LS---PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ----cC---ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 00 122 5799999999999998763 335566778888898888888887643
No 227
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.88 E-value=5.2e-09 Score=84.58 Aligned_cols=67 Identities=21% Similarity=0.470 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+++.. ++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~------------------------~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATAN------------------------DV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcch------------------------hh
Confidence 578999999999999999999999999998752 2466777766532 35
Q ss_pred HHhcCcCceeeEEEECCCC
Q 013684 316 TKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G 334 (438)
...+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6778899999999995444
No 228
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.87 E-value=7.7e-09 Score=85.34 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
++.++|+||++||++|+.+.|.|.++.+.+ + .+++..|+.|.. .++++.|+|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~------------------------~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDED------------------------KEKAEKYGV 73 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcC------------------------HHHHHHcCC
Confidence 467899999999999999999999998775 2 377777777643 678899999
Q ss_pred CccceEEEecC
Q 013684 151 EGIPCLVVLQP 161 (438)
Q Consensus 151 ~~~P~~~lvd~ 161 (438)
.++|++++++.
T Consensus 74 ~~vPt~~i~~~ 84 (113)
T cd02975 74 ERVPTTIFLQD 84 (113)
T ss_pred CcCCEEEEEeC
Confidence 99999999984
No 229
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.85 E-value=1.9e-08 Score=78.66 Aligned_cols=69 Identities=30% Similarity=0.581 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
+++++|+||++||++|..+.+.+.++.++ . . ++.++.|+++.. ..+
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~---------~~~~~~i~~~~~-----------------------~~~ 55 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P---------KVKFVKVDVDEN-----------------------PEL 55 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-C---------CceEEEEECCCC-----------------------hhH
Confidence 37899999999999999999999998877 2 2 578888888754 568
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+.|++.++|+++++ .+|+++..
T Consensus 56 ~~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 56 AEEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred HHhcCcccccEEEEE-ECCEEEEE
Confidence 889999999999999 56776654
No 230
>PTZ00102 disulphide isomerase; Provisional
Probab=98.85 E-value=1.9e-08 Score=104.26 Aligned_cols=73 Identities=21% Similarity=0.418 Sum_probs=59.8
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.+++.++|.|||+||++|+++.|.+.++++.+++. +.++.+..|+++.+ .
T Consensus 47 ~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~ 96 (477)
T PTZ00102 47 TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------M 96 (477)
T ss_pred hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------H
Confidence 35789999999999999999999999999988754 33566666666544 6
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++++|+|.++||+++++.++.+
T Consensus 97 ~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 97 ELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHHhcCCCcccEEEEEECCceE
Confidence 78999999999999999655444
No 231
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.7e-09 Score=104.47 Aligned_cols=72 Identities=22% Similarity=0.438 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 234 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 234 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
.....+||.||||||++|++++|++.+.++.++.. +..+.+.-|.+..+ .
T Consensus 40 ~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~-------~s~i~LakVDat~~-----------------------~ 89 (493)
T KOG0190|consen 40 NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE-------GSPVKLAKVDATEE-----------------------S 89 (493)
T ss_pred ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-------CCCceeEEeecchh-----------------------h
Confidence 34578999999999999999999999999999875 45566666655433 7
Q ss_pred HHHHhcCcCceeeEEEECCCCcE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i 336 (438)
.++.+|+|+++||+.++ ++|+.
T Consensus 90 ~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 90 DLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred hhHhhhcCCCCCeEEEE-ecCCc
Confidence 89999999999999999 88885
No 232
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.83 E-value=1.3e-08 Score=107.01 Aligned_cols=76 Identities=22% Similarity=0.460 Sum_probs=59.7
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+..+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.|+++++.
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~------------------ 520 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN------------------ 520 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC------------------
Confidence 335689999999999999999988864 45555553 4677777776442
Q ss_pred CchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 309 DPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 309 ~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
+...++.++|++.++|+++++|++|+++
T Consensus 521 -~~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 521 -AEDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred -hhhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 1246789999999999999999999985
No 233
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.83 E-value=2.1e-08 Score=91.20 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred HhhcccccCCCCCEEeccccCCCEEEEEEeccCCc-cchhhHHHHHHHHHHHhcC-CCCEEEEEEecCC---CHHHHHHh
Q 013684 50 LRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNY 124 (438)
Q Consensus 50 ~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~iv~vs~D~---~~~~~~~~ 124 (438)
++++|-|.+.+|+.++-.++.||+++++|..+.|| .|..++..|.++.+++... |....-++|++|. +.+.+.+|
T Consensus 118 iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 118 IGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred cCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 46667689999999999999999999999999999 9999999999999998775 3344579999986 78888999
Q ss_pred HhcCC--cccccCCChHHHHHHhhhcCcC---------------ccceEEEecCCCCCCCcccccc
Q 013684 125 RACMP--WLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 125 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++... ..-+.. ..+.-..+++.|.|- +.=.+||+|+ +|+.+...+
T Consensus 198 ~~eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~G 259 (280)
T KOG2792|consen 198 VSEFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYYG 259 (280)
T ss_pred HHhcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhhc
Confidence 98764 223333 333347788888773 2336789999 988875544
No 234
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.82 E-value=1.6e-08 Score=81.67 Aligned_cols=78 Identities=14% Similarity=0.350 Sum_probs=57.7
Q ss_pred CCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCC
Q 013684 58 KEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS 136 (438)
Q Consensus 58 ~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~ 136 (438)
+++++.+.-.. -.+++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+.
T Consensus 4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------- 62 (104)
T cd02995 4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------- 62 (104)
T ss_pred EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc--------------------
Confidence 44455442221 23589999999999999999999999999998763 246666665442
Q ss_pred ChHHHHHHhhhcCcCccceEEEecC
Q 013684 137 DLETKKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 137 d~~~~~~l~~~~~v~~~P~~~lvd~ 161 (438)
.+++..+++.++|+++++.+
T Consensus 63 -----~~~~~~~~~~~~Pt~~~~~~ 82 (104)
T cd02995 63 -----NDVPSEFVVDGFPTILFFPA 82 (104)
T ss_pred -----hhhhhhccCCCCCEEEEEcC
Confidence 23556788899999999985
No 235
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.81 E-value=1.1e-08 Score=103.56 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=57.8
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
.++++|||+|||+||++|+.+.|.|.++++++++.+ +.++.|++|.+.. ....+.|
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~ 424 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQEL 424 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHc
Confidence 367899999999999999999999999999997654 7888888775421 2345689
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
+|.++||++++..
T Consensus 425 ~I~~~PTii~Fk~ 437 (463)
T TIGR00424 425 QLGSFPTILFFPK 437 (463)
T ss_pred CCCccceEEEEEC
Confidence 9999999999985
No 236
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.6e-08 Score=83.35 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=88.7
Q ss_pred CCCCCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC------
Q 013684 215 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 287 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d------ 287 (438)
..-+|+. |.+|+ .++++.++||++|+.-.|+.|+.-...-..|+.|+++|+++ +++|++..++
T Consensus 13 siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~QE 82 (171)
T KOG1651|consen 13 SIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQE 82 (171)
T ss_pred ceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCcC
Confidence 4467888 99999 99999999999999999999999998888999999999987 8999999995
Q ss_pred -CCHHHHHHHHhcCCCcccccC------CchhHHHHHhcCcC-------cee---eEEEECCCCcEEEccc
Q 013684 288 -RDQTSFESYFGTMPWLALPFG------DPTIKELTKYFDVQ-------GIP---CLVIIGPEGKTVTKQG 341 (438)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~p~~------~d~~~~l~~~~~v~-------~~P---~~~lid~~G~i~~~~~ 341 (438)
.+.+++..++.......+|+. .+....+.+...-. .|. +-||+|++|+++.|.+
T Consensus 83 p~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 83 PGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred CCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 244677777764444555552 22223333332211 222 6799999999999865
No 237
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.75 E-value=2.3e-08 Score=89.04 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++|+|+||++||++|+.+.|.|.++++++. ++.++-|+++. ..+...|+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~-------------------------~~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASA-------------------------TGASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccc-------------------------hhhHHhCCC
Confidence 3599999999999999999999999999873 36666665541 157788999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+||++++. +|+++.+-
T Consensus 134 ~~vPTlllyk----~G~~v~~~ 151 (175)
T cd02987 134 DALPALLVYK----GGELIGNF 151 (175)
T ss_pred CCCCEEEEEE----CCEEEEEE
Confidence 9999999998 88877543
No 238
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-08 Score=84.19 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=90.3
Q ss_pred HHHHhhccchhHHHHHhhcccccCCCCCEEeccccCCC-EEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 35 LRFLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 35 ~~~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
....+|+.+|+|+ |.|.+|+.++|.++.|+ +|+++|| +...|.|.+..-.+..-|++++..+ .+|+++
T Consensus 61 ~~v~~Gd~iPD~t--------L~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~Gl 130 (211)
T KOG0855|consen 61 LKVNKGDAIPDFT--------LKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGL 130 (211)
T ss_pred eeeecCCcCCCcc--------cccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEee
Confidence 4566899999999 99999999999999775 8888888 6667899999999999999999877 999999
Q ss_pred ecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc-------eEEEecC
Q 013684 113 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP 161 (438)
Q Consensus 113 s~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lvd~ 161 (438)
|.|+.. .-+.|..++..+.-..+|+. .++.+.+|+...| +.++++.
T Consensus 131 S~D~s~-sqKaF~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k 183 (211)
T KOG0855|consen 131 SGDDSA-SQKAFASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK 183 (211)
T ss_pred ccCchH-HHHHhhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence 999653 34556655554444444555 7888888886544 6677775
No 239
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-08 Score=92.48 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=58.5
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.++.-.+|.|+|+|+|+||+||+.+.|.+.++..+|.. ..++-|++|.- +..
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c------------------------~~t 66 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC------------------------RGT 66 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh------------------------hch
Confidence 34555679999999999999999999999999999933 55666655522 567
Q ss_pred hhhcCcCccceEEEecCCCCCCCcc
Q 013684 145 NRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 145 ~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
+..+||.++||++++. +|.-+
T Consensus 67 aa~~gV~amPTFiff~----ng~ki 87 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR----NGVKI 87 (288)
T ss_pred hhhcCcccCceEEEEe----cCeEe
Confidence 7889999999999998 66443
No 240
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.73 E-value=4.9e-08 Score=78.87 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
.|+++++.|+++||++|..+.|.+.+++++++++ +.++.|++|.. ..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~ 57 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GR 57 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HH
Confidence 3789999999999999999999999999999854 67777776643 56
Q ss_pred HHHhcCcC--ceeeEEEECC
Q 013684 315 LTKYFDVQ--GIPCLVIIGP 332 (438)
Q Consensus 315 l~~~~~v~--~~P~~~lid~ 332 (438)
+++.||+. ++|++++++.
T Consensus 58 ~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 58 HLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHHcCCChhhCCEEEEEec
Confidence 88999999 9999999966
No 241
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.70 E-value=1.7e-07 Score=77.37 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=57.2
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHH-HH--HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPK-LL--SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.-++|+++|+|+++||++|+.+... |. ++.+.+.+ ++.++.++++...
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----------~~v~~~~d~~~~e----------------- 64 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----------NFIFWQCDIDSSE----------------- 64 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----------CEEEEEecCCCcc-----------------
Confidence 344568999999999999999998764 32 34444443 3444444443321
Q ss_pred CCchhHHHHHhcCcCceeeEEEECC-CCcEEEc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGP-EGKTVTK 339 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 339 (438)
...+.+.|++.++|+++++|+ +|+++.+
T Consensus 65 ----~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 65 ----GQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred ----HHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 367889999999999999999 8999987
No 242
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.68 E-value=7e-08 Score=75.38 Aligned_cols=67 Identities=25% Similarity=0.494 Sum_probs=55.8
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++++|+||++||++|+.+.+.|.++.++ . .++.++.++.+.. ..+.+.|++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~--~~~~~~~i~~~~~------------------------~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--Y--PKVKFVKVDVDEN------------------------PELAEEYGV 61 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--C--CCceEEEEECCCC------------------------hhHHHhcCc
Confidence 38999999999999999999999999887 2 2488888877643 677889999
Q ss_pred CccceEEEecCCCCCCCcc
Q 013684 151 EGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~ 169 (438)
.++|++++++ +|.++
T Consensus 62 ~~~P~~~~~~----~g~~~ 76 (93)
T cd02947 62 RSIPTFLFFK----NGKEV 76 (93)
T ss_pred ccccEEEEEE----CCEEE
Confidence 9999999997 55544
No 243
>PHA02125 thioredoxin-like protein
Probab=98.68 E-value=1e-07 Score=72.52 Aligned_cols=57 Identities=32% Similarity=0.607 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+++||++||++|+...|.|.++ . ++++-|+.|.. .++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~------------~~~~~vd~~~~-----------------------~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----E------------YTYVDVDTDEG-----------------------VELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----h------------heEEeeeCCCC-----------------------HHHHHHc
Confidence 6899999999999999987543 1 23455554433 6789999
Q ss_pred CcCceeeEEEECCCCcEEEc
Q 013684 320 DVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~~ 339 (438)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999976 5666544
No 244
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.66 E-value=9.1e-08 Score=70.91 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
-+..|+++|||+|+...+.|+++.+.. +++++..++++.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999998886543 2578888877654 567889
Q ss_pred cCcCceeeEEEECCCCcEEEc
Q 013684 319 FDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~~ 339 (438)
||+.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999764 5667654
No 245
>PLN02309 5'-adenylylsulfate reductase
Probab=98.66 E-value=6.3e-08 Score=98.00 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=56.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~ 148 (438)
++++++|+|||+||++|+.+.|.+.+++++++..+ +.++.|+.|.+. ..++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~-----------------------~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ-----------------------KEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc-----------------------hHHHHhhC
Confidence 57899999999999999999999999999997654 888877776221 45554 69
Q ss_pred CcCccceEEEecC
Q 013684 149 DIEGIPCLVVLQP 161 (438)
Q Consensus 149 ~v~~~P~~~lvd~ 161 (438)
+|.++||++++.+
T Consensus 419 ~I~~~PTil~f~~ 431 (457)
T PLN02309 419 QLGSFPTILLFPK 431 (457)
T ss_pred CCceeeEEEEEeC
Confidence 9999999999975
No 246
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.66 E-value=1.7e-07 Score=76.89 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+.+.+||.|+|+| |+|.. .|++.+|+.++... ...+.|.-|.++...+ ..+.+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhhHH
Confidence 4578999999944 44443 36666666666432 1245666666643110 01478
Q ss_pred HHHhcCcC--ceeeEEEECCCCc
Q 013684 315 LTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 315 l~~~~~v~--~~P~~~lid~~G~ 335 (438)
|+++|+|+ ++||+.|+ ++|.
T Consensus 70 L~~~y~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 70 LGERYKLDKESYPVIYLF-HGGD 91 (116)
T ss_pred HHHHhCCCcCCCCEEEEE-eCCC
Confidence 99999999 99999999 5553
No 247
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.65 E-value=1.1e-07 Score=88.45 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=76.2
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
...|+|.|||.||+..+.+.|.+.+.++.++++ .++-++|+-++|++.+ ..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence 468999999999999999999999999999987 5556788888887753 678
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHh
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA 371 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~ 371 (438)
+.+|.|+.+||+-++ .+|.+..+.. ...+.+++|.+.|++.+
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~rEY-------------Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKREY-------------RGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCceeeee-eccchhhhhh-------------ccchhHHHHHHHHHHHh
Confidence 999999999999999 8998887642 23344666666665543
No 248
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.62 E-value=1.2e-07 Score=73.12 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=47.9
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
.+..||++||++|+...|.|.+++++++. ++.++.|+.+.+ .++.+.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMEN------------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccC------------------------HHHHHHcCCccC
Confidence 47789999999999999999999998853 377777776644 456678999999
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|++++
T Consensus 55 Pt~~~ 59 (82)
T TIGR00411 55 PAIVI 59 (82)
T ss_pred CEEEE
Confidence 99875
No 249
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.7e-07 Score=76.57 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred hhhcCCCCCcc-CCCCCceeeccccCCCEEEEEEe-cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC
Q 013684 211 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 288 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~ 288 (438)
.+|+.+|+|++ +.+.. .+++.++.||..+|..+ +-..|.|......+++.+.++. +..|+.||+|
T Consensus 19 ~vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D- 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD- 85 (158)
T ss_pred ccCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-
Confidence 47899999999 99999 99999999987665555 5689999999999998887765 5789999998
Q ss_pred CHHHHHHHHhcCCCcccccCCc-hhHHHHHhcCc--Ccee-------eEEEECCCCcEEEcccchh
Q 013684 289 DQTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIP-------CLVIIGPEGKTVTKQGRNL 344 (438)
Q Consensus 289 ~~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~ 344 (438)
-+-+.++|+...+.-++..+.| .+..+.+.||+ ...| +++++|.+|++++.+....
T Consensus 86 LPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 86 LPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred ChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 5678889999888666666666 56778999997 3444 7899999999999864333
No 250
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.61 E-value=1.1e-07 Score=100.16 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=58.3
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++++.+ ...++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~--------------------~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA--------------------EDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh--------------------hhHHHH
Confidence 3589999999999999999988864 56666663 37777777664311 126889
Q ss_pred hhcCcCccceEEEecCCCCCCCcc
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
++|++.++|+++++++ +|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECC---CCCCc
Confidence 9999999999999999 99875
No 251
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.61 E-value=1.2e-07 Score=72.33 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=46.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
|.||++|||+|+.+.|.+.++.+++... +++ +.+| +. ..+..||
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~----------~~~--~~v~-~~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID----------AEF--EKVT-DM-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC----------eEE--EEeC-CH-----------------------HHHHHcC
Confidence 7899999999999999999999987633 455 4444 21 1256799
Q ss_pred cCceeeEEEECCCCcEEEc
Q 013684 321 VQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~~~ 339 (438)
+.++|++++ +|+++..
T Consensus 47 v~~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 47 VTATPGVAV---DGELVIM 62 (76)
T ss_pred CCcCCEEEE---CCEEEEE
Confidence 999999888 8887743
No 252
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.56 E-value=1.4e-07 Score=85.07 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+++|+|.||++||++|+.+.|.|.+++.++. .+.++-|+++ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad---------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIIST---------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhH---------------------------HhHhhCCC
Confidence 4699999999999999999999999999983 2666666443 12467999
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
..+||++++. +|.++.+..
T Consensus 151 ~~lPTlliyk----~G~~v~~iv 169 (192)
T cd02988 151 KNLPTILVYR----NGDIVKQFI 169 (192)
T ss_pred CCCCEEEEEE----CCEEEEEEe
Confidence 9999999998 888776543
No 253
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.54 E-value=2.4e-07 Score=72.82 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=58.8
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+.++++.+-+..|+++||++|....+.+.++.+.+. ++.+..++.+..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~--------------------- 54 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF--------------------- 54 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC---------------------
Confidence 346778889999999999999999998888886543 477888877644
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++++.|||.++|++++ +|+++..
T Consensus 55 --~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 --QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred --HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 56889999999999974 6888876
No 254
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.53 E-value=3.4e-07 Score=84.12 Aligned_cols=85 Identities=25% Similarity=0.313 Sum_probs=66.6
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.+++-|++|+.+.|++|+.+.|.|..+.+++ ++.|+.||+|...- -.||-...
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~- 171 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP- 171 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC-
Confidence 3455678899999999999999999999999988 48999999996421 12333222
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+..+.+.+||..+|+++|+++++.....-
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKKWYPV 200 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCeEEEE
Confidence 46788899999999999999998555443
No 255
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.53 E-value=3.2e-07 Score=67.92 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=44.9
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCcc
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 153 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~ 153 (438)
-+..|+++|||+|+...+.|.++.+.. .++++..+++|.. .++++.|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~------------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEF------------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccC------------------------HhHHHHcCCccc
Confidence 367899999999999999998886643 2377777766543 567888999999
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|++++
T Consensus 54 Pti~i 58 (67)
T cd02973 54 PAIVI 58 (67)
T ss_pred CEEEE
Confidence 99865
No 256
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.52 E-value=1.6e-07 Score=87.04 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=62.9
Q ss_pred CCCCCccCCCCCceeeccccCC-CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 293 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~g-k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~ 293 (438)
..|.+..|++.+ +.+.++ ..++|.||||||.+|+++.|.|.++--++++. ++-|---.+|...
T Consensus 25 kgpt~VeDLddk----FkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~--- 88 (468)
T KOG4277|consen 25 KGPTAVEDLDDK----FKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR--- 88 (468)
T ss_pred CCchhhhhhhHH----hhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---
Confidence 344455455544 223333 58999999999999999999999998888865 3333323344432
Q ss_pred HHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 294 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 294 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
-..++..|||+|+||+.++ ++|-.+..
T Consensus 89 ------------------f~aiAnefgiqGYPTIk~~-kgd~a~dY 115 (468)
T KOG4277|consen 89 ------------------FPAIANEFGIQGYPTIKFF-KGDHAIDY 115 (468)
T ss_pred ------------------chhhHhhhccCCCceEEEe-cCCeeeec
Confidence 2678999999999999999 56555543
No 257
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.47 E-value=3.8e-07 Score=73.60 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|.. ..+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~------------------------~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF------------------------GRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh------------------------HHHHHHcCC
Confidence 789999999999999999999999999999743 77777755532 678899999
Q ss_pred C--ccceEEEecC
Q 013684 151 E--GIPCLVVLQP 161 (438)
Q Consensus 151 ~--~~P~~~lvd~ 161 (438)
. .+|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
No 258
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.46 E-value=3.5e-08 Score=60.67 Aligned_cols=29 Identities=38% Similarity=1.165 Sum_probs=14.3
Q ss_pred cccCccCCCCCc-eeEEcCCCCCCccCccc
Q 013684 399 FICCDCDEQGSG-WAYQCLECGYEVHPKCV 427 (438)
Q Consensus 399 ~~c~~C~~~~~~-w~~~c~~c~~~~~~~c~ 427 (438)
+.|+.|++.+.+ |.|+|.+|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999999 99999999999999997
No 259
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.45 E-value=8.8e-07 Score=82.89 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=76.0
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+.+.+++-|++||...|++|+++.|.++.+.++| ++.|+.||+|.... -.||....
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~~-----------p~fp~~~~- 201 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTLI-----------PGLPNSRS- 201 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCccC-
Confidence 3455668899999999999999999999999988 48999999996521 12333322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 373 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~ 373 (438)
+...++.+||..+|+++|++++.+....-+.+.+ . .++|.+.|...+..
T Consensus 202 d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~i------S-------~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 202 DSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFI------S-------QDELKERILNVLTQ 250 (256)
T ss_pred ChHHHHhcCCccCceEEEEECCCCcEEEEeeccC------C-------HHHHHHHHHHHHhc
Confidence 4567889999999999999999665554332222 1 35666666555443
No 260
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.42 E-value=1.3e-06 Score=70.84 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCcc-CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC-------C
Q 013684 218 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-------D 289 (438)
Q Consensus 218 ~f~l-~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~-------~ 289 (438)
+|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++ +++|+++.++. +
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcnqFg~QEp~~ 71 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCNQFGNQEPGS 71 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBSTTTTTTSSC
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehHHhccccCCC
Confidence 5777 99999 9999999999999999999999988 888999999999977 89999999863 3
Q ss_pred HHHHHHHHhcCCCccccc
Q 013684 290 QTSFESYFGTMPWLALPF 307 (438)
Q Consensus 290 ~~~~~~~~~~~~~~~~p~ 307 (438)
.++++.++.......||+
T Consensus 72 ~~ei~~~~~~~~~~~F~v 89 (108)
T PF00255_consen 72 NEEIKEFCKEKFGVTFPV 89 (108)
T ss_dssp HHHHHHHHCHCHT-SSEE
T ss_pred HHHHHHHHHhccCCcccc
Confidence 445555555432234443
No 261
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.41 E-value=2.2e-07 Score=86.07 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
...++|.|||+||++|++..|.+.++--++++.|..+.+ -.+|.+.- ..++..|+|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikV--GKlDaT~f----------------------~aiAnefgi 98 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKV--GKLDATRF----------------------PAIANEFGI 98 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceee--cccccccc----------------------hhhHhhhcc
Confidence 358999999999999999999999999999887733333 23443322 688999999
Q ss_pred CccceEEEecCCCCCCCcccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
+++||..++.. +-.+-++++
T Consensus 99 qGYPTIk~~kg---d~a~dYRG~ 118 (468)
T KOG4277|consen 99 QGYPTIKFFKG---DHAIDYRGG 118 (468)
T ss_pred CCCceEEEecC---CeeeecCCC
Confidence 99999999985 544555554
No 262
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.40 E-value=7.3e-06 Score=86.50 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=106.6
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+++.+.++.|+.+.|..|.+....|.++.+ +.++ +.+...+.+.+ .+++
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~------------------------~~~~ 412 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEE------------------------PESE 412 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccc------------------------hhhH
Confidence 345677788889998889888877666666553 3222 55544332221 6778
Q ss_pred hhcCcCccceEEEecCCCCCCC---cccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCccC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 222 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~---v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l~ 222 (438)
+.|++...|++.+++. +|. +.+.+. |.=.+.-..+.+..... ...+.+
T Consensus 413 ~~~~v~~~P~~~i~~~---~~~~~~i~f~g~------------P~G~Ef~s~i~~i~~~~-----------~~~~~l--- 463 (555)
T TIGR03143 413 TLPKITKLPTVALLDD---DGNYTGLKFHGV------------PSGHELNSFILALYNAA-----------GPGQPL--- 463 (555)
T ss_pred hhcCCCcCCEEEEEeC---CCcccceEEEec------------CccHhHHHHHHHHHHhc-----------CCCCCC---
Confidence 8999999999999976 543 443332 11112222222222111 111111
Q ss_pred CCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 013684 223 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 223 ~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
+.+..=.+..+.++..+-.|.+++||+|......+++++... +++..-.|.....
T Consensus 464 -~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~------------- 518 (555)
T TIGR03143 464 -GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF------------- 518 (555)
T ss_pred -CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc-------------
Confidence 111001123445566677888999999998777777666553 2456555555433
Q ss_pred cccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 303 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 303 ~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.++.++|+|.++|++++ ||+++..
T Consensus 519 ----------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ----------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ----------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 67889999999999775 5666655
No 263
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.40 E-value=9.1e-07 Score=69.54 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+.++++.+-+..|+++||++|+...+.+.++.+++. ++++..+++|.. .+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~------------------------~e~a 58 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALF------------------------QDEV 58 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhC------------------------HHHH
Confidence 456788889999999999999999999988887652 366666655533 6788
Q ss_pred hhcCcCccceEEEecCCCCCCCcccc
Q 013684 146 RKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.|+|.++|++++ ||+++..
T Consensus 59 ~~~~V~~vPt~vi------dG~~~~~ 78 (89)
T cd03026 59 EERGIMSVPAIFL------NGELFGF 78 (89)
T ss_pred HHcCCccCCEEEE------CCEEEEe
Confidence 9999999999974 5555554
No 264
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.39 E-value=8.6e-07 Score=74.19 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=50.4
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHH---HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+|+|+|++.||++|+.+...+- ++.+.+++ ++.+|.+..|.+.. .. .
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~-----------------~~---~- 74 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDK-----------------NL---S- 74 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCC-----------------Cc---C-
Confidence 3346899999999999999999987653 24444432 37666665553311 00 0
Q ss_pred HhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 144 LNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 144 l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+ .++|+++++|+ +|+++.+-
T Consensus 75 ---~~g-~~vPtivFld~---~g~vi~~i 96 (130)
T cd02960 75 ---PDG-QYVPRIMFVDP---SLTVRADI 96 (130)
T ss_pred ---ccC-cccCeEEEECC---CCCCcccc
Confidence 022 47999999999 99888664
No 265
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.38 E-value=6.6e-07 Score=83.27 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
...|+|+|||+||+.++...|.+.+.++.+++.-.+-.+|+-.+|++.+ ..|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 4699999999999999999999999999998876567788888998876 789999999
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+||+-|+. +|.+..+.
T Consensus 71 ~KyPTlKvfr----nG~~~~rE 88 (375)
T KOG0912|consen 71 NKYPTLKVFR----NGEMMKRE 88 (375)
T ss_pred ccCceeeeee----ccchhhhh
Confidence 9999999998 88777643
No 266
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.38 E-value=1.3e-06 Score=81.26 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=64.4
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+++.+++-|++||.+.||+|.++.|.++.+.+++ ++.|+.||+|.... -.||....
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~- 194 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT- 194 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence 3444567899999999999999999999999988 48899999996421 23443322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
+...++.+||..+|+++|++++.+-...
T Consensus 195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 195 DQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred ChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 2445689999999999999999754444
No 267
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.36 E-value=9.8e-07 Score=68.27 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=33.9
Q ss_pred ccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 233 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 233 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
..+||+++|+|++.||++|+.+...+ .++.+.+.+ ++..+.|..+..
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~~ 63 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDDE 63 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTTH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCCC
Confidence 34589999999999999999988776 234443553 466676666543
No 268
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.4e-06 Score=70.66 Aligned_cols=118 Identities=15% Similarity=0.301 Sum_probs=92.7
Q ss_pred hhcCCCCCccCCCCCceeeccccCCCEEEEEEe--cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCC
Q 013684 212 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 289 (438)
Q Consensus 212 ~g~~~~~f~l~~~g~~~~~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~ 289 (438)
+|+.+|+|..++.-. .+++.++.|.-+.|.|. |...|.|..++..+.+++-+|..+ +++.++.|+|.-
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 688999999944444 59999999998888888 568999999999999999999866 899999999842
Q ss_pred --HHHH----HHHHhcCC-CcccccCCchhHHHHHhcCc------------CceeeEEEECCCCcEEEc
Q 013684 290 --QTSF----ESYFGTMP-WLALPFGDPTIKELTKYFDV------------QGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 290 --~~~~----~~~~~~~~-~~~~p~~~d~~~~l~~~~~v------------~~~P~~~lid~~G~i~~~ 339 (438)
...| +.|.+..+ -+.||+..|.+++++-.|+. ...-.+++||++.+++-.
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 2233 33333222 37789999999999988876 124578999999998765
No 269
>PHA02125 thioredoxin-like protein
Probab=98.35 E-value=1e-06 Score=66.98 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=38.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++||++|+...|.|.++. +.++-|+.|.. .++++.|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~------------------------~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG------------------------VELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC------------------------HHHHHHcCCceeC
Confidence 78999999999999999886431 33443333322 6889999999999
Q ss_pred eEE
Q 013684 155 CLV 157 (438)
Q Consensus 155 ~~~ 157 (438)
|++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
No 270
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=1.5e-06 Score=87.71 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=54.7
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
+..+|.||++|||+|+.+.|.++++++.+..-..-+.|..| |+-. . .+..+|+.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaV--dCA~-------------------~-~N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAV--DCAD-------------------E-ENVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEe--eccc-------------------h-hhhhhHhhcCCC
Confidence 47899999999999999999999999999887432344444 4321 1 127999999999
Q ss_pred ccceEEEecC
Q 013684 152 GIPCLVVLQP 161 (438)
Q Consensus 152 ~~P~~~lvd~ 161 (438)
.+|++..+.+
T Consensus 116 ~~Ptlryf~~ 125 (606)
T KOG1731|consen 116 GYPTLRYFPP 125 (606)
T ss_pred CCceeeecCC
Confidence 9999999997
No 271
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.33 E-value=1.4e-06 Score=66.40 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=41.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
-|.||++|||+|+.+.|.+.++.+++.. .++++-| | + ...+..|++.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v--~-~------------------------~~~a~~~~v~~vP 51 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKV--T-D------------------------MNEILEAGVTATP 51 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEe--C-C------------------------HHHHHHcCCCcCC
Confidence 3789999999999999999999999743 2555544 3 1 1124569999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 52 ti~i 55 (76)
T TIGR00412 52 GVAV 55 (76)
T ss_pred EEEE
Confidence 9988
No 272
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.9e-06 Score=71.31 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=98.0
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEE-EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
..+|+.+|+|+ +.+.+.+.+++.++.||..+ .-|-+..-|.|......+++.+.++. +..++.||+|
T Consensus 18 ~~vGd~ap~ft--------l~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D 85 (158)
T COG2077 18 PQVGDKAPDFT--------LVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD 85 (158)
T ss_pred CccCCcCCceE--------EEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC
Confidence 35899999999 89999999999999998654 45558888999999999999888873 4889999999
Q ss_pred CCHHHHHHhHhcCCccccc-CCChHHHHHHhhhcCcC--c-------cceEEEecCCCCCCCcccccchhHHhh
Q 013684 116 EDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE--G-------IPCLVVLQPYDDKDDATLHDGVELIYK 179 (438)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~--~-------~P~~~lvd~~~~~G~v~~~~~~~~i~~ 179 (438)
-+.+..+|....+...+. .+|- ....+.+.||+. . -.+.+++|. +|++++......|.+
T Consensus 86 -LPFAq~RfC~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~ 154 (158)
T COG2077 86 -LPFAQKRFCGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITE 154 (158)
T ss_pred -ChhHHhhhhhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhc
Confidence 556678888887765433 3222 236788889873 2 348899998 999999887665544
No 273
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.7e-06 Score=74.25 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=90.6
Q ss_pred hhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe-ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC-
Q 013684 39 IMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE- 116 (438)
Q Consensus 39 ~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~- 116 (438)
+..++|+|+ +..++ +..-+.++|++++||+|+++|| ..+--.|..++-.+...+++|+..+ .+|+++|+|.
T Consensus 6 ~~~p~p~fk---~~aVV--dG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~ 78 (196)
T KOG0852|consen 6 VFKPAPDFK---GTAVV--DGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSV 78 (196)
T ss_pred cCCCCCCcc---eeEEE--cCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccch
Confidence 445667777 44444 5666789999999999999999 4555689999999999999999975 9999999995
Q ss_pred -CHHHHHHhHhcC---CcccccCCChHHHHHHhhhcCcC------ccceEEEecCCCCCCCcccc
Q 013684 117 -DLNAFNNYRACM---PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 117 -~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lvd~~~~~G~v~~~ 171 (438)
+.-+|...-++. +-+.+|. -.+.+.+|++.||+- .+-.+++||+ +|.+...
T Consensus 79 fshlAW~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i 139 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI 139 (196)
T ss_pred hhhhhHhcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence 344455444433 2233554 333448999999983 5678999999 9877653
No 274
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.30 E-value=4.5e-07 Score=55.61 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.6
Q ss_pred cccCccCCCCCce-eEEcCCCCCCccCccc
Q 013684 399 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 427 (438)
Q Consensus 399 ~~c~~C~~~~~~w-~~~c~~c~~~~~~~c~ 427 (438)
++|+-|.+...+- .|+|.+|+|+||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5899999999999 9999999999999997
No 275
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.28 E-value=1.9e-06 Score=66.65 Aligned_cols=44 Identities=36% Similarity=0.669 Sum_probs=33.3
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecC
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D 115 (438)
-+||+++|+|+++||++|+.+...+ .++.+.+.. ++..+.|+++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcC
Confidence 3689999999999999999998876 334443443 3777777665
No 276
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.28 E-value=1.2e-06 Score=71.87 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCCEEEEEEec--cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 70 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 70 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.+.+||.|+| +||+ + .|.+.+++.++.....++.|.-|+.|+- ......+|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~-------------------~~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDY-------------------GEKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccc-------------------cchhhHHHHHH
Confidence 56899999999 6666 3 3555555555544322355666655421 01112789999
Q ss_pred cCcC--ccceEEEecC
Q 013684 148 FDIE--GIPCLVVLQP 161 (438)
Q Consensus 148 ~~v~--~~P~~~lvd~ 161 (438)
|+|+ ++||+.++..
T Consensus 74 y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 74 YKLDKESYPVIYLFHG 89 (116)
T ss_pred hCCCcCCCCEEEEEeC
Confidence 9999 9999999984
No 277
>smart00594 UAS UAS domain.
Probab=98.25 E-value=9.3e-06 Score=67.90 Aligned_cols=73 Identities=16% Similarity=0.342 Sum_probs=52.7
Q ss_pred ccccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 231 VSSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 231 l~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.+.-.+|.++|+|+++||++|..+....- ++.+.+.. ++.++.++++..+
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e----------------- 74 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE----------------- 74 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh-----------------
Confidence 34446899999999999999999776532 33444432 3445555544332
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCCC
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~G 334 (438)
...+++.|++.++|+++++|++|
T Consensus 75 ----g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 ----GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred ----HHHHHHhcCcCCCCEEEEEecCC
Confidence 36789999999999999999998
No 278
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.24 E-value=4.9e-06 Score=76.01 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred hhhcCCCCCcc-CCCCCce-eeccccC--CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEe-
Q 013684 211 LLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS- 285 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~g~~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is- 285 (438)
.+|..+||..+ +.+|+ . .++-++. +++++|+|.+-.||+-+.-.+.++++.++|.+.. ++-+|.|.
T Consensus 74 ~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a--------dFl~VYI~E 144 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA--------DFLIVYIEE 144 (237)
T ss_pred eCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh--------heehhhHhh
Confidence 46899999999 99999 6 8888875 5899999999999999999999999999999751 34444442
Q ss_pred ---cC--------------CC-HH--HHHHHHhcCCCcccccCCc-hhHHHHHhcCcCceeeEEEECCCCcEEEcccchh
Q 013684 286 ---TD--------------RD-QT--SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 344 (438)
Q Consensus 286 ---~d--------------~~-~~--~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 344 (438)
.| .+ ++ ...+.+.+.. ...|+..| .++...++||..-- .+|+| .+|++++.+|
T Consensus 145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg--- 218 (237)
T PF00837_consen 145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG--- 218 (237)
T ss_pred hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC---
Confidence 11 01 11 1222222222 46676555 67788888986433 45666 6999999974
Q ss_pred hhhccccCCCCCHHHHHHHH
Q 013684 345 INLYQENAYPFTEAKLEFLE 364 (438)
Q Consensus 345 ~~~~g~~~~~~~~~~~~~L~ 364 (438)
.++|.+..+.+++..
T Consensus 219 -----~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 219 -----PGPFGYSPEELREWL 233 (237)
T ss_pred -----CCCCcCCHHHHHHHH
Confidence 444566665555443
No 279
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.3e-06 Score=70.59 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=81.0
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-------CCHHHHHHhHh-c
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNYRA-C 127 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-------~~~~~~~~~~~-~ 127 (438)
.++.+|+.++|++++||++||--.|+-|+.-. ....|..+|++|+++| ++|+++..+ .+.++..++.+ +
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 78999999999999999999999999999766 5667999999999998 999999874 36677777776 4
Q ss_pred CCcccccCCC---------hHHHHHHhhhc-------CcCccceEEEecCCCCCCCcccccc
Q 013684 128 MPWLAVPYSD---------LETKKALNRKF-------DIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 128 ~~~~~~~~~d---------~~~~~~l~~~~-------~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
++..+.-+.. +-. +-|.... .|..==+-+|||+ +|+++.|..
T Consensus 87 YgVtFp~f~Ki~VnG~~a~PLy-~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf~ 144 (162)
T COG0386 87 YGVTFPMFSKIDVNGKNAHPLY-KYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRFS 144 (162)
T ss_pred cCceeeeeeEEeecCCCCCcHH-HHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEeeC
Confidence 4432222210 001 2222222 2233347789999 999998865
No 280
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.21 E-value=6.8e-06 Score=67.79 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=56.3
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHH-H--HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.+.-++|+++|+|+++||++|+.+... | .++.+.+++ ++.++.++++.... .
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~----------------------~ 66 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEG----------------------Q 66 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccH----------------------H
Confidence 344468999999999999999998764 3 235555543 26666655543211 6
Q ss_pred HHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 143 ALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 143 ~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
.++..|++.++|+++++++ .+|+++.+
T Consensus 67 ~~~~~~~~~~~P~~~~i~~--~~g~~l~~ 93 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDP--RTGEVLKV 93 (114)
T ss_pred HHHHHhCccCCCeEEEEeC--ccCcEeEE
Confidence 7889999999999999997 24776654
No 281
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.19 E-value=3.5e-06 Score=70.99 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=47.2
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
+.+..+..++.|..+|||.|....|.+.++++... ++++-.|..|.+.+.+.++
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~--------------- 90 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQY--------------- 90 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTT---------------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHH---------------
Confidence 34455678899999999999999999999998743 4677777666443221111
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+ ..|...+|+++++|.+|+.+.+.
T Consensus 91 ---l--t~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 91 ---L--TNGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---T--T-SS--SSEEEEE-TT--EEEEE
T ss_pred ---H--hCCCeecCEEEEEcCCCCEeEEE
Confidence 1 15788999999999999999874
No 282
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.1e-06 Score=86.56 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=57.2
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
+..+|.||++|||+|++++|.++++++.+..- .+=+.|..|++-.+. +..+|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 57899999999999999999999999988764 234556666654332 58899
Q ss_pred HhcCcCceeeEEEECCCC
Q 013684 317 KYFDVQGIPCLVIIGPEG 334 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G 334 (438)
+.|+|.++|++.++.++-
T Consensus 110 Ref~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhcCCCCCceeeecCCcc
Confidence 999999999999997773
No 283
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.11 E-value=5.4e-06 Score=76.25 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=64.1
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++|+.+.|++|..+.|.|..+.+++ ++.|+.||+|.... ..+|-.-. ...++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP--DPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC--CHHHH
Confidence 45666789999999999999999999999999997 39999999995422 11221111 26788
Q ss_pred hhcCcCccceEEEecCCCCCC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKD 166 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G 166 (438)
+.++|..+|+++||++ ++
T Consensus 177 ~~l~v~~~Pal~Lv~~---~~ 194 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNP---NT 194 (215)
T ss_pred HHcCCCcCCEEEEEEC---CC
Confidence 8999999999999998 66
No 284
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.10 E-value=1.2e-05 Score=65.19 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=53.8
Q ss_pred ccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 56 STKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 56 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
..+.+|+.++|+.++||++||.=.|+-|+.-. ....|++++++++++| ++|+++..+.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 67999999999999999999999999999888 8889999999999987 9999998763
No 285
>smart00594 UAS UAS domain.
Probab=98.04 E-value=2e-05 Score=65.84 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=52.2
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
-++|.++|+|+++||++|+.+.... .++.+.+++ ++.++.++++.... ..++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg----------------------~~l~ 79 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEG----------------------QRVS 79 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhH----------------------HHHH
Confidence 4689999999999999999987653 224445533 36666565443321 6889
Q ss_pred hhcCcCccceEEEecCCCCCC
Q 013684 146 RKFDIEGIPCLVVLQPYDDKD 166 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~~~~~G 166 (438)
+.|++.++|+++++++ +|
T Consensus 80 ~~~~~~~~P~~~~l~~---~~ 97 (122)
T smart00594 80 QFYKLDSFPYVAIVDP---RT 97 (122)
T ss_pred HhcCcCCCCEEEEEec---CC
Confidence 9999999999999998 65
No 286
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.04 E-value=1.6e-05 Score=64.36 Aligned_cols=67 Identities=37% Similarity=0.603 Sum_probs=52.3
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
....++++++.||++||++|+...|.+.++.+++.. .+.++.++....
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~---------------------- 75 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE---------------------- 75 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC----------------------
Confidence 334488999999999999999999999999998863 367888887511
Q ss_pred hHHHHHhcC--cCceeeEEEE
Q 013684 312 IKELTKYFD--VQGIPCLVII 330 (438)
Q Consensus 312 ~~~l~~~~~--v~~~P~~~li 330 (438)
...+...|+ +..+|+++++
T Consensus 76 ~~~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 76 NPDLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred ChHHHHHHhhhhccCCeEEEE
Confidence 255666677 7888988765
No 287
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.04 E-value=3.1e-05 Score=67.19 Aligned_cols=87 Identities=17% Similarity=0.337 Sum_probs=48.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCH-HHHHHHHhcCCCc
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWL 303 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~ 303 (438)
.+..+.-.+|+++|.++++||.+|+.+... + .++++-+.++ +|.|.+|.++ .++...+..
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~~---- 92 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYMN---- 92 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHHH----
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHHH----
Confidence 344455568999999999999999997753 2 2455555544 6777776543 222222211
Q ss_pred ccccCCchhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 304 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 304 ~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
......|..|+|+.++++++|+.+...
T Consensus 93 ----------~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 ----------AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ----------HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred ----------HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111223788999999999999998753
No 288
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.03 E-value=2.5e-05 Score=55.67 Aligned_cols=63 Identities=29% Similarity=0.548 Sum_probs=48.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.||++||++|....+.+.++ .+.. .++.++.++++...+.. .....+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~--------------------~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPALE--------------------KELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHHh--------------------hHHHhC
Confidence 4789999999999999999988 3332 37899999988664211 113578
Q ss_pred CcCceeeEEEECCC
Q 013684 320 DVQGIPCLVIIGPE 333 (438)
Q Consensus 320 ~v~~~P~~~lid~~ 333 (438)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 89999999999766
No 289
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0001 Score=62.27 Aligned_cols=87 Identities=25% Similarity=0.456 Sum_probs=62.9
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
....+|+.++.|..+.|++|.++-..+. ++.+-++. ++.++.+....+.. ..+-.+
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g 96 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVG 96 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecC
Confidence 4456899999999999999999876654 45555554 47777777653321 111111
Q ss_pred C----chhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 309 D----PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 309 ~----d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
. -...++++.|+|+++|+++++|.+|+.+..
T Consensus 97 ~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 97 DKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred ceeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 1 134699999999999999999999988765
No 290
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.96 E-value=2.7e-05 Score=62.99 Aligned_cols=70 Identities=36% Similarity=0.644 Sum_probs=53.3
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.......++++++.||++||++|+.+.|.+.++.+++.. .+.++.++.. .. .
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~------------------------~ 77 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDEN------------------------P 77 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCC------------------------h
Confidence 344444589999999999999999999999999999865 2677777664 12 4
Q ss_pred HHhhhcC--cCccceEEEec
Q 013684 143 ALNRKFD--IEGIPCLVVLQ 160 (438)
Q Consensus 143 ~l~~~~~--v~~~P~~~lvd 160 (438)
.+...|+ +..+|+++++.
T Consensus 78 ~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHHHHhhhhccCCeEEEEe
Confidence 5555566 77789887655
No 291
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.89 E-value=2.6e-05 Score=73.11 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=62.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++||.+.|++|..+.|.|+.+.+++ ++.|+.||+|.... ..+|-.-.+ ..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRSD--SGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence 45556789999999999999999999999999997 39999999996522 112221122 6778
Q ss_pred hhcCcCccceEEEecC
Q 013684 146 RKFDIEGIPCLVVLQP 161 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~ 161 (438)
+.++|..+|+++||++
T Consensus 207 ~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 207 QHLGVKYFPALYLVNP 222 (256)
T ss_pred HhcCCccCceEEEEEC
Confidence 8999999999999998
No 292
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.88 E-value=2e-05 Score=66.42 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=47.9
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHH
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 144 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 144 (438)
.+.....+..++.|..+|||.|+...|.|.++++... ++++-.+..|+.. ++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~------------------------el 86 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENK------------------------EL 86 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHH------------------------HH
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCCh------------------------hH
Confidence 3455566788999999999999999999999999853 3666666555443 33
Q ss_pred hhh---cCcCccceEEEecCCCCCCCcccccc
Q 013684 145 NRK---FDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 145 ~~~---~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
... .+...+|+++++|. +|+.+.+-+
T Consensus 87 ~~~~lt~g~~~IP~~I~~d~---~~~~lg~wg 115 (129)
T PF14595_consen 87 MDQYLTNGGRSIPTFIFLDK---DGKELGRWG 115 (129)
T ss_dssp TTTTTT-SS--SSEEEEE-T---T--EEEEEE
T ss_pred HHHHHhCCCeecCEEEEEcC---CCCEeEEEc
Confidence 333 46789999999998 888776543
No 293
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.85 E-value=2.9e-05 Score=72.33 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=61.4
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.+++-|++||.+.||+|..+.|.|+.+.+++ ++.|+.||+|.... ..+|..-.+ ...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRTD--QGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCccC--hhHH
Confidence 45555689999999999999999999999999997 38999999996422 112221122 4556
Q ss_pred hhcCcCccceEEEecC
Q 013684 146 RKFDIEGIPCLVVLQP 161 (438)
Q Consensus 146 ~~~~v~~~P~~~lvd~ 161 (438)
+.++|..+|+++||++
T Consensus 200 ~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 200 QRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcCCcccceEEEEEC
Confidence 8899999999999998
No 294
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.81 E-value=8.2e-05 Score=52.90 Aligned_cols=62 Identities=31% Similarity=0.576 Sum_probs=47.6
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.||++||++|+...+.+.++ +.... ++.++.++.+..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK--GVKFEAVDVDEDPAL---------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC--CcEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence 5789999999999999999998 33333 489999988765331 1114568899999
Q ss_pred eEEEecC
Q 013684 155 CLVVLQP 161 (438)
Q Consensus 155 ~~~lvd~ 161 (438)
++++++.
T Consensus 56 ~~~~~~~ 62 (69)
T cd01659 56 TLVVFGP 62 (69)
T ss_pred EEEEEeC
Confidence 9999985
No 295
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.79 E-value=0.00026 Score=59.42 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=64.2
Q ss_pred EEEEEEecC--CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 238 TVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 238 ~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
..+|+|-+. -+|-+.-..-.|.++.++|.+. ++.++.|++|.+ ..+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~L 83 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAI 83 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHH
Confidence 344444432 4666777777888999998633 478888888866 789
Q ss_pred HHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHHHHhccC
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL 374 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~~~~~~~ 374 (438)
+..|||.++||++|+ ++|+.+.+. .|... -+++.+.|++.+...
T Consensus 84 A~~fgV~siPTLl~F-kdGk~v~~i-------~G~~~-------k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 84 GDRFGVFRFPATLVF-TGGNYRGVL-------NGIHP-------WAELINLMRGLVEPQ 127 (132)
T ss_pred HHHcCCccCCEEEEE-ECCEEEEEE-------eCcCC-------HHHHHHHHHHHhcCc
Confidence 999999999999999 999999873 34222 255666666655543
No 296
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.78 E-value=3e-05 Score=79.29 Aligned_cols=74 Identities=18% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCCEEEEEEeccCCccchhhHHHHH-HHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF 148 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 148 (438)
++|+|+|+|||+||-.|+.+.+..- +....++-.+ +..+-+++..+ ++.. .++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~-------------------~p~~-~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTAN-------------------DPAI-TALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCC-------------------CHHH-HHHHHHc
Confidence 4569999999999999999987554 5555555443 55555544322 3332 7889999
Q ss_pred CcCccceEEEecCCCCCCCc
Q 013684 149 DIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 149 ~v~~~P~~~lvd~~~~~G~v 168 (438)
++-+.|+++++++ +|.-
T Consensus 531 ~~~G~P~~~ff~~---~g~e 547 (569)
T COG4232 531 GVFGVPTYLFFGP---QGSE 547 (569)
T ss_pred CCCCCCEEEEECC---CCCc
Confidence 9999999999998 7743
No 297
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=6e-05 Score=67.18 Aligned_cols=93 Identities=19% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+.+++++.|+|.|.|-|..+.|.+.++..+|... ++.+-.|.+..= ..
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd 190 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PD 190 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cC
Confidence 4468999999999999999999999999999854 677777776543 33
Q ss_pred HHHhcCc------CceeeEEEECCCCcEEEcccchhhhhc-cccCCCCCHHHHHH
Q 013684 315 LTKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLY-QENAYPFTEAKLEF 362 (438)
Q Consensus 315 l~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~-g~~~~~~~~~~~~~ 362 (438)
++.+|+| +..||++++ ++|+.+.|. ..+..- -+..|+++++.+-.
T Consensus 191 ~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred hHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHH
Confidence 4566666 578999999 888877663 333333 34678888877643
No 298
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.67 E-value=7.4e-05 Score=76.51 Aligned_cols=76 Identities=25% Similarity=0.473 Sum_probs=55.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
++|+|+|+|||.||-.|+.+.+..- +.....+- .++..+-++...+. +.+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---------~~~vlLqaDvT~~~-------------------p~~~ 524 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---------QDVVLLQADVTAND-------------------PAIT 524 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---------CCeEEEEeeecCCC-------------------HHHH
Confidence 4569999999999999999887644 33333332 25555555543332 2357
Q ss_pred HHHHhcCcCceeeEEEECCCCcEEE
Q 013684 314 ELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
++.++||+-+.|++++++++|+...
T Consensus 525 ~lLk~~~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 525 ALLKRLGVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred HHHHHcCCCCCCEEEEECCCCCcCc
Confidence 8889999999999999999997644
No 299
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.64 E-value=0.00035 Score=51.95 Aligned_cols=59 Identities=25% Similarity=0.499 Sum_probs=42.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+++|||+|+...+.|.+ . ++.+..++++.+.+. ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 457899999999998776653 2 467788888765432 14466778
Q ss_pred CcCceeeEEEECCCCcE
Q 013684 320 DVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i 336 (438)
++.++|++++- |++
T Consensus 47 ~~~~vP~~~~~---~~~ 60 (74)
T TIGR02196 47 GQRGVPVIVIG---HKI 60 (74)
T ss_pred CCCcccEEEEC---CEE
Confidence 99999998763 555
No 300
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.61 E-value=0.00025 Score=58.44 Aligned_cols=78 Identities=22% Similarity=0.477 Sum_probs=49.3
Q ss_pred CCCEEEEEEecC-------CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 235 VGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 235 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.|++++|+|+++ |||.|....|.+.+......+ +..+|.+.+. +...|+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkd------------ 74 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKD------------ 74 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-------------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCC------------
Confidence 467788888853 999999999999988877443 4778888775 4344432
Q ss_pred CCchhHHHHH--hcCcCceeeEEEECCCCcEEE
Q 013684 308 GDPTIKELTK--YFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 308 ~~d~~~~l~~--~~~v~~~P~~~lid~~G~i~~ 338 (438)
.+..+.. .++++++||++-++..++++.
T Consensus 75 ---p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 75 ---PNNPFRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TTSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CCCCceEcceeeeeecceEEEECCCCccch
Confidence 1233444 699999999999977766553
No 301
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.57 E-value=0.00075 Score=55.75 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=52.9
Q ss_pred ccccCCCEEEEEEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 231 VSSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 231 l~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
.+.-.+|.++|+|+++ ||.+|+..... .++.+-+.. ++.+.+.+++..+
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e---------------- 64 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE---------------- 64 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH----------------
Confidence 3445689999999999 88999774321 123333332 4555555555432
Q ss_pred cCCchhHHHHHhcCcCceeeEEEE---CCCCcEEEc
Q 013684 307 FGDPTIKELTKYFDVQGIPCLVII---GPEGKTVTK 339 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v~~~P~~~li---d~~G~i~~~ 339 (438)
..+++..+++.++|++.++ +.+.+++.+
T Consensus 65 -----g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 -----GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred -----HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 3678999999999999999 666666766
No 302
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0004 Score=58.81 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=61.7
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHH---HHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCCh----
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL---- 138 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~---- 138 (438)
+...++|..++.|-...|++|.++...+.. +.+-+++ ++.++.+....... +.+.+.
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skp-------------v~f~~g~kee 100 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKP-------------VLFKVGDKEE 100 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcc-------------eEeecCceee
Confidence 344578999999999999999998876643 5555554 37777777643322 111111
Q ss_pred -HHHHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 139 -ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 139 -~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
....+|++.|+|+++|+++++|. +|+.+..
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk---~Gk~Il~ 131 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDK---TGKTILE 131 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcC---CCCEEEe
Confidence 11279999999999999999999 9876643
No 303
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.56 E-value=0.00037 Score=52.57 Aligned_cols=63 Identities=16% Similarity=0.345 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH-h
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 318 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~ 318 (438)
+..||++|||+|+...+.|.++ ++.+-.++++.+.+.. ..+.+ .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~~-------------------~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGAA-------------------DRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhHH-------------------HHHHHHh
Confidence 5679999999999988877543 2345556666553211 11212 2
Q ss_pred cCcCceeeEEEECCCCcEEEc
Q 013684 319 FDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~~~ 339 (438)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 588999986 46 47777654
No 304
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0003 Score=60.57 Aligned_cols=120 Identities=17% Similarity=0.323 Sum_probs=86.2
Q ss_pred HHhhccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEe--ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 37 FLIMSLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 37 ~~~g~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
+.+|+.+|+|+ ..+..|+ +++.++-|.-+.|.|. |...|.|..++..+++++-+|..++ +.+++.|+
T Consensus 6 l~lgd~~PNfe--------a~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~ 74 (224)
T KOG0854|consen 6 LRLGDTVPNFE--------ADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSV 74 (224)
T ss_pred ccccCcCCCcc--------ccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeeh
Confidence 34899999999 7777775 9999999887777787 7778999999999999999999876 99999999
Q ss_pred CC--CHHHHHHhHhcC----CcccccCC-ChHHHHHHhhhcCcC------------ccceEEEecCCCCCCCcccc
Q 013684 115 DE--DLNAFNNYRACM----PWLAVPYS-DLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 115 D~--~~~~~~~~~~~~----~~~~~~~~-d~~~~~~l~~~~~v~------------~~P~~~lvd~~~~~G~v~~~ 171 (438)
|. +...|.+-++.+ +- .++|. -.+...+++-.|+.- ....+++|++ +.++.-.
T Consensus 75 d~vesH~~Wi~DIks~~~~~~~-~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKirLs 146 (224)
T KOG0854|consen 75 DDVESHKDWIKDIKSYAKVKNH-SVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIRLS 146 (224)
T ss_pred hhHHHHHHHHHHHHHHHhccCC-CCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEEEE
Confidence 83 445554444322 21 13332 112236676666541 3568889998 8776533
No 305
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00035 Score=59.92 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=58.1
Q ss_pred ccchhHHHHHhhcccccCCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 41 SLSQWYVQQLRRRMTSTKEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 41 ~~~p~f~~~~~~~~~~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
..+=+|+ ..+.+|+.|+|+.++||++||.--|+-|+.-...-..|+.++++|++.| ++|++....
T Consensus 12 ~siydf~--------~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 12 GSIYDFS--------AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred cceeeeE--------EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 3445677 8899999999999999999999999999988877789999999999998 999999864
No 306
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.45 E-value=0.00023 Score=54.79 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=45.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++|||+|....+.|.++. +. +.++++-|+.+.+.+.+. ..+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----------~~~~~~~v~~~~~~~~~~------------------~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----------PAYEVVELDQLSNGSEIQ------------------DYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----------CCCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence 46799999999999999888765 22 126677777664433322 3456678
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|+..+|+++ + +|+.+
T Consensus 51 g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 51 GQRTVPNIF-I--NGKFI 65 (84)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 899999975 4 56654
No 307
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.45 E-value=6.6e-05 Score=50.09 Aligned_cols=31 Identities=32% Similarity=0.775 Sum_probs=28.3
Q ss_pred ccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 400 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
.|+.|++...+-+|+|..| |||||..|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 6999999999999999999 999999997643
No 308
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.44 E-value=0.0012 Score=62.41 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec---CCC-------------H-HHHHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DRD-------------Q-TSFESYF 297 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~---d~~-------------~-~~~~~~~ 297 (438)
.++.+++.|.-+.||+|+++...+.++.+. . +++|..+.. ..+ . ..|..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g-----------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~ 183 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G-----------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYE 183 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C-----------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHH
Confidence 467899999999999999999988776543 1 244433322 111 1 1122222
Q ss_pred hcCCC--ccccc--------CCchhHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 298 GTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 298 ~~~~~--~~~p~--------~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..... +.-+- ..+.+..+.+.+|++++|++++.|.+|++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 184 ASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred HhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 11110 00100 11235578889999999999999999986443
No 309
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.43 E-value=8.2e-05 Score=64.60 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=44.8
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHH-H--HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
+....-++|+++|.++++||..|+.+..+ + .++++-+++. |.-|-|+.++.++- +...
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdi----------------d~~y 90 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDI----------------DKIY 90 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHH----------------HHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccH----------------HHHH
Confidence 34444468999999999999999988752 2 2244454433 55555554443321 1111
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCcccc
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
........+..++|+++++.+ +|+.++.
T Consensus 91 ~~~~~~~~~~gGwPl~vfltP---dg~p~~~ 118 (163)
T PF03190_consen 91 MNAVQAMSGSGGWPLTVFLTP---DGKPFFG 118 (163)
T ss_dssp HHHHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred HHHHHHhcCCCCCCceEEECC---CCCeeee
Confidence 111122237789999999999 9998865
No 310
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.41 E-value=0.00044 Score=51.40 Aligned_cols=56 Identities=18% Similarity=0.491 Sum_probs=40.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|+++||++|+...+.|.+ .+ +.+..++++.+.. ...++.+.+++..+|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA--------------------AREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH--------------------HHHHHHHHhCCCccc
Confidence 568999999999998777654 23 6677777765432 114677788999999
Q ss_pred eEEEe
Q 013684 155 CLVVL 159 (438)
Q Consensus 155 ~~~lv 159 (438)
++++-
T Consensus 53 ~~~~~ 57 (74)
T TIGR02196 53 VIVIG 57 (74)
T ss_pred EEEEC
Confidence 98863
No 311
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.40 E-value=0.00029 Score=54.24 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=41.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+...+.|.++. .. ..++++.|+.+.+.. .....+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 47899999999999999888765 21 126777666654322 1124567778889999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 57 ~v~i 60 (84)
T TIGR02180 57 NIFI 60 (84)
T ss_pred eEEE
Confidence 9854
No 312
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.35 E-value=0.00031 Score=57.94 Aligned_cols=72 Identities=21% Similarity=0.509 Sum_probs=46.3
Q ss_pred CCCEEEEEEec-------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHH
Q 013684 70 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK 142 (438)
Q Consensus 70 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~ 142 (438)
.|++++|.|++ +|||.|+...|.+.+..+...+ +..+|.+.+.+. ..|+ ++. .
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk--------------dp~--n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK--------------DPN--N 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC---------------TT--S
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC--------------CCC--C
Confidence 46788888885 5999999999999998888433 377777776422 2222 111 2
Q ss_pred HHhh--hcCcCccceEEEecC
Q 013684 143 ALNR--KFDIEGIPCLVVLQP 161 (438)
Q Consensus 143 ~l~~--~~~v~~~P~~~lvd~ 161 (438)
.... .+++.++||++-++.
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp HHHH--CC---SSSEEEECTS
T ss_pred CceEcceeeeeecceEEEECC
Confidence 3333 589999999999986
No 313
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.34 E-value=0.00065 Score=51.22 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=39.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh-hcCcCcc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KFDIEGI 153 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~v~~~ 153 (438)
+..||++||++|+...+.|.++ + +.+-.++++.+... ...+.. .+++..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~--------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA--------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH--------------------HHHHHHHhCCCcee
Confidence 5789999999999988876543 3 33445666644321 022222 2578899
Q ss_pred ceEEEecCCCCCCCcccc
Q 013684 154 PCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 154 P~~~lvd~~~~~G~v~~~ 171 (438)
|++ +++ +|.++..
T Consensus 53 P~i-~~~----~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KFA----DGSFLTN 65 (77)
T ss_pred CEE-EEC----CCeEecC
Confidence 986 455 6665544
No 314
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.32 E-value=0.0035 Score=58.46 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC---CH----------------HHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQ----------------TSFES 295 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~ 295 (438)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... .. ..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 47789999999999999999988876543 2 35555543211 11 12222
Q ss_pred HHhcCCCcc---cccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 296 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 296 ~~~~~~~~~---~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
++.... .. .....+.+.++++.+||+++|+++ + ++|+++
T Consensus 173 ~~~~~~-~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 173 AMKGKD-VSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred HHcCCC-CCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 222111 11 111224667899999999999988 4 578776
No 315
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.19 E-value=0.00014 Score=49.22 Aligned_cols=29 Identities=31% Similarity=0.804 Sum_probs=27.0
Q ss_pred ccCccCCCCCceeEEcCCC-CCCccCcccc
Q 013684 400 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVR 428 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~ 428 (438)
.||.|.+.-++.+|+|.+| ||||+..|-.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~ 31 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFL 31 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHh
Confidence 5999999999999999999 9999999965
No 316
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.12 E-value=0.0067 Score=45.93 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=40.6
Q ss_pred ecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc
Q 013684 244 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 323 (438)
Q Consensus 244 ~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 323 (438)
++++|+.|......++++.+++. +.+-.+.. .+ ..++ .+|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~----------------------~~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-ED----------------------FEEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TT----------------------HHHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cC----------------------HHHH-HHcCCCC
Confidence 57779999988888888777663 34433333 23 2455 8999999
Q ss_pred eeeEEEECCCCcEEEcc
Q 013684 324 IPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 324 ~P~~~lid~~G~i~~~~ 340 (438)
+|++ ++ ||+++..+
T Consensus 50 vPal-vI--ng~~~~~G 63 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFVG 63 (76)
T ss_dssp SSEE-EE--TTEEEEES
T ss_pred CCEE-EE--CCEEEEEe
Confidence 9998 56 58888764
No 317
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.08 E-value=0.00028 Score=47.47 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.2
Q ss_pred ccCccCCCC-CceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~~~-~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++.. .+-+|+|..| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999544 5999999999 99999999864
No 318
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.05 E-value=0.0041 Score=56.46 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCC--C--------------HHH
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 292 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~--~--------------~~~ 292 (438)
+.+..-.+++.++.|+.+.||+|+++.+.+.+ .... -.+.++.+.... + .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~--------v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADG--------VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCc--------eEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 33333447899999999999999999998876 1111 134555554432 1 112
Q ss_pred HHHHHhcCCC----cccccCCchhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 293 FESYFGTMPW----LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 293 ~~~~~~~~~~----~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
|.++.....- -......+.+..+++.+||+++|+++ + .+|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 3333322110 01112334667899999999999997 5 567764
No 319
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.03 E-value=0.00085 Score=61.53 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=58.1
Q ss_pred HHHhhccchhHHHHHhhcccccCCCCCE-EeccccC--CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 36 RFLIMSLSQWYVQQLRRRMTSTKEIGEE-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 36 ~~~~g~~~p~f~~~~~~~~~~~~~~g~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
...+|..|||.. +.+.+|+. .++.|+. +++++|+|.+-.||+=+.-++.++++.++|.+. .++-+|.|
T Consensus 72 ~a~~G~~APns~--------vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI 142 (237)
T PF00837_consen 72 EAKLGGPAPNSP--------VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI 142 (237)
T ss_pred ceeCCCCCCCCc--------eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence 445799999999 78999998 8999983 689999999999999999999999999999886 24555555
No 320
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.02 E-value=0.0046 Score=47.89 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=46.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+.+|||+|......|.++..++. ++.+..++++.+..+. .++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~~-------------------~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGISK-------------------ADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHHH-------------------HHHHHHH
Confidence 567889999999999999999886643 4677778777553211 2334434
Q ss_pred --CcCceeeEEEECCCCcEEE
Q 013684 320 --DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 --~v~~~P~~~lid~~G~i~~ 338 (438)
++..+|+++ + +|+.+.
T Consensus 53 ~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred CCCCCcCCEEE-E--CCEEEc
Confidence 458899976 4 677764
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.02 E-value=0.018 Score=60.37 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=49.7
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.+..-+..|..+.||+|......+++++... +++..-.| |...
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----------~~i~~~~i--d~~~--------------------- 157 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----------PNITHTMI--DGAL--------------------- 157 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------
Confidence 3445566788999999999998877777666532 34555555 3332
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..++.+.|++.++|++++ +|+.+..
T Consensus 158 ~~~~~~~~~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 158 FQDEVEARNIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence 377889999999999975 4555543
No 322
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.97 E-value=0.0004 Score=47.14 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=29.0
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|++.-.+-+|+|.+| +|||+.+|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 57999999888899999999 799999998765
No 323
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.96 E-value=0.0028 Score=52.33 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=49.1
Q ss_pred cccCCCEEEEEEecc----CCccchhhH--HHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 67 SDLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 67 ~~~~gk~vll~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
..-++|.++|+++++ ||..|+..+ |.+.+..+ + ++.+++.++.....
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~---~fv~w~~dv~~~eg--------------------- 65 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T---RMLFWACSVAKPEG--------------------- 65 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c---CEEEEEEecCChHH---------------------
Confidence 344689999999999 888997765 44444442 2 37666666654321
Q ss_pred HHHHhhhcCcCccceEEEecC
Q 013684 141 KKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~ 161 (438)
..++..+++..+|++.++.+
T Consensus 66 -~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 -YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred -HHHHHHhCCCCCCEEEEEEe
Confidence 68899999999999999975
No 324
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.95 E-value=0.00041 Score=47.53 Aligned_cols=30 Identities=33% Similarity=0.907 Sum_probs=26.4
Q ss_pred ccCccCCC-CCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~~-~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++. -.+.+|+|..| ||||+..|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999974 68999999999 99999999753
No 325
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.95 E-value=0.00039 Score=45.50 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=27.2
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccccC
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAVD 431 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~~~ 431 (438)
.||.|+. .-.+-+|+|..| ||||+..|-....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~ 35 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG 35 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence 5999997 458899999999 9999999986543
No 326
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.86 E-value=0.0068 Score=55.02 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=56.9
Q ss_pred EeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---C-------------HHHHHHhHhc
Q 013684 64 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---D-------------LNAFNNYRAC 127 (438)
Q Consensus 64 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~-------------~~~~~~~~~~ 127 (438)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+..+.++.++... . .+.|.++...
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 44444457999999999999999999998876 1222234444444332 1 1222222222
Q ss_pred CCc---ccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 128 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 128 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
..- ........+.+..+++.+|+.++|+++ ++ +|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeEe
Confidence 111 001112334567899999999999997 44 56543
No 327
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.001 Score=60.07 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+++.+++.||+.||.+|.++...+..+.+.++ ++.++.+..+. ..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-----------~~~~~k~~a~~-----------------------~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-----------NAQFLKLEAEE-----------------------FPE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-----------hheeeeehhhh-----------------------hhH
Confidence 67889999999999999999999998888773 34555554443 267
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
++..+.+.+.|.+.++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 8999999999998888 67766655
No 328
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.77 E-value=0.0059 Score=57.62 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=56.4
Q ss_pred cCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec-----C-----------CCH-HHHHHhHhcCCcc
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-----D-----------EDL-NAFNNYRACMPWL 131 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~-----D-----------~~~-~~~~~~~~~~~~~ 131 (438)
-.+|.+++.|+-+.||+|+++.+++.++.+. | ++++..+.+ + .++ ..|..+.......
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3578999999999999999999988776543 2 255544432 1 111 1222222211110
Q ss_pred ---cccC-C-----ChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 132 ---AVPY-S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 132 ---~~~~-~-----d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
...- . ....+..+.+.+|++++|++++.|. +|.+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~ 232 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL 232 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence 0000 0 1123467888999999999999998 8875
No 329
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.70 E-value=0.011 Score=42.41 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+.+|||+|......|.+ . ++.+-.++++.+.+. ..++.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 467889999999998777632 2 567777777765421 24555556
Q ss_pred CcCceeeEEEECCCCcE
Q 013684 320 DVQGIPCLVIIGPEGKT 336 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i 336 (438)
|...+|++++ +|+.
T Consensus 46 g~~~~P~v~i---~g~~ 59 (60)
T PF00462_consen 46 GVRTVPQVFI---DGKF 59 (60)
T ss_dssp SSSSSSEEEE---TTEE
T ss_pred CCCccCEEEE---CCEE
Confidence 9999999885 5554
No 330
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.68 E-value=0.00098 Score=44.68 Aligned_cols=30 Identities=20% Similarity=0.729 Sum_probs=25.9
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|+. .-.+-+|+|.+| ||||+..|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5999986 567799999999 89999999754
No 331
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0034 Score=50.86 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=48.9
Q ss_pred CCCEEEEEEec--------cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHH
Q 013684 70 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK 141 (438)
Q Consensus 70 ~gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (438)
+|+.+++.|++ +|||.|....|.+.+..+... .++.+|.+.+.+.+- |. ++.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~----------Wk-----~p~-- 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPY----------WK-----DPA-- 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCc----------cc-----CCC--
Confidence 56778899985 799999999999998888543 347777776642211 21 111
Q ss_pred HHHhhhcCc-CccceEEEecC
Q 013684 142 KALNRKFDI-EGIPCLVVLQP 161 (438)
Q Consensus 142 ~~l~~~~~v-~~~P~~~lvd~ 161 (438)
..+....++ .++||++=.++
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 334444555 89999998884
No 332
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.61 E-value=0.014 Score=54.48 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-----C-------------C-HHHHHHhHhcCCc
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----E-------------D-LNAFNNYRACMPW 130 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-----~-------------~-~~~~~~~~~~~~~ 130 (438)
.||.+++.|.-+.||+|+++.+++.++.+ .+ ++|.++... . + ...|.+.+.....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 57899999999999999999988876533 33 666554321 0 1 1112222221111
Q ss_pred cc-ccCCChHHHHHHhhhcCcCccceEEE
Q 013684 131 LA-VPYSDLETKKALNRKFDIEGIPCLVV 158 (438)
Q Consensus 131 ~~-~~~~d~~~~~~l~~~~~v~~~P~~~l 158 (438)
.. ....+...+.++++.+||+++|++++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~ 208 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL 208 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE
Confidence 11 11123345689999999999999884
No 333
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.59 E-value=0.0013 Score=45.36 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=27.7
Q ss_pred cccCccCCCCCc-eeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~-w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|.+.-.. -+|+|.+| +|||+..|-...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 579999987776 89999999 999999998643
No 334
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.51 E-value=0.013 Score=51.82 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 267 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 267 (438)
.+++.++.|+...||+|..+.+.+.++.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578999999999999999999999999888754
No 335
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.51 E-value=0.0093 Score=56.55 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
++.+|+|.||-+.++.|..+...|..|+.+|. .++|+.|....- .
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-
Confidence 35689999999999999999999999999987 468888876532 1
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
+...|....+|+++++ ++|.++...
T Consensus 190 ~~~~f~~~~LPtllvY-k~G~l~~~~ 214 (265)
T PF02114_consen 190 ASENFPDKNLPTLLVY-KNGDLIGNF 214 (265)
T ss_dssp TTTTS-TTC-SEEEEE-ETTEEEEEE
T ss_pred cccCCcccCCCEEEEE-ECCEEEEeE
Confidence 4567889999999999 899988764
No 336
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0076 Score=48.86 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCCEEEEEEec--------CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccc
Q 013684 235 VGKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP 306 (438)
Q Consensus 235 ~gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p 306 (438)
+|+.++++|.+ +|||.|.+..|.+.+..+.... ++.+|-+.+.. .+.|
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~-rp~W------------- 79 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGN-RPYW------------- 79 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecC-CCcc-------------
Confidence 35557777775 4999999999998888775543 57777777752 2222
Q ss_pred cCCchhHHHHHhcCc-CceeeEEEECC
Q 013684 307 FGDPTIKELTKYFDV-QGIPCLVIIGP 332 (438)
Q Consensus 307 ~~~d~~~~l~~~~~v-~~~P~~~lid~ 332 (438)
.+.+..+....++ .++||++=.+.
T Consensus 80 --k~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 80 --KDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred --cCCCCccccCCCceeecceeeEEcC
Confidence 1223445555666 89999998864
No 337
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.45 E-value=0.013 Score=44.33 Aligned_cols=59 Identities=20% Similarity=0.457 Sum_probs=39.8
Q ss_pred EeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEE
Q 013684 78 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV 157 (438)
Q Consensus 78 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~ 157 (438)
+++++|+.|......++++.+++. .+++++ ... +. .++ ..||+..+|+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~--~~~---------------------~~---~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG---IEVEII--DIE---------------------DF---EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT---EEEEEE--ETT---------------------TH---HHH-HHTT-SSSSEEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC---CeEEEE--Ecc---------------------CH---HHH-HHcCCCCCCEEE
Confidence 367779999988888888877752 124333 221 11 556 899999999996
Q ss_pred EecCCCCCCCccccc
Q 013684 158 VLQPYDDKDDATLHD 172 (438)
Q Consensus 158 lvd~~~~~G~v~~~~ 172 (438)
+ ||++++.+
T Consensus 55 I------ng~~~~~G 63 (76)
T PF13192_consen 55 I------NGKVVFVG 63 (76)
T ss_dssp E------TTEEEEES
T ss_pred E------CCEEEEEe
Confidence 6 67776554
No 338
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.45 E-value=0.0066 Score=47.40 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=48.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC--CC-----HHHHHHHH--hcCCCcccccCCc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--RD-----QTSFESYF--GTMPWLALPFGDP 310 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d--~~-----~~~~~~~~--~~~~~~~~p~~~d 310 (438)
+..|+.+.||+|....+.+.++.+...+ ++.+....+. .. ....+... .... ....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 69 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEA 69 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHH
Confidence 3578899999999999999988744332 4667666542 22 11111111 1100 00000000
Q ss_pred -hhHHHHHhcCcCceeeEEEEC
Q 013684 311 -TIKELTKYFDVQGIPCLVIIG 331 (438)
Q Consensus 311 -~~~~l~~~~~v~~~P~~~lid 331 (438)
......+.+|+.++|++++-|
T Consensus 70 l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 70 LADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHcCCCCCCEEEECC
Confidence 456788899999999998876
No 339
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.44 E-value=0.1 Score=54.73 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=47.8
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
..+.++.-+..|..+.||+|+.....++++.... +++..-.| |...
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-----------p~i~~~~i--d~~~--------------------- 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-----------PNISHTMI--DGAL--------------------- 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-----------CCceEEEE--Echh---------------------
Confidence 4455667788999999999997766666555442 24444443 3322
Q ss_pred hHHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
.+++.++|++.++|++++ +|+.+..
T Consensus 159 ~~~~~~~~~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 159 FQDEVEALGIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred CHHHHHhcCCcccCEEEE---CCcEEEe
Confidence 267889999999999875 4444443
No 340
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.43 E-value=0.0041 Score=44.64 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=39.2
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+.+|||+|+.....| .+.| +..-.++++.+.+ ...++.+..+...+|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE--------------------AREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh--------------------HHHHHHHHcCCCccC
Confidence 4678999999999977665 2333 6666777765532 125666666999999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 341
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.42 E-value=0.0021 Score=43.11 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=28.8
Q ss_pred CcccCccCCCCCceeEEcCCC-CCCccCccccc
Q 013684 398 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 398 ~~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.+.|+.|++.-.+-+|+|..| +|||++.|-..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 468999999888899999999 99999999764
No 342
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.40 E-value=0.033 Score=50.93 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=82.0
Q ss_pred CCCCCccCCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHH
Q 013684 215 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 294 (438)
Q Consensus 215 ~~~~f~l~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~ 294 (438)
+.|.+++ +|. ..+.+..|++++|.+...+|..|...+..|..|..++... +..++.++.|+--.....++
T Consensus 9 ~~p~W~i--~~~--~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~------g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKI--GGQ--DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENE------GLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCceE--CCc--hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHC------CCCceEEEEEcCCCcchhHH
Confidence 3455543 232 4567889999999999999999999999999999999865 24578888888644333332
Q ss_pred -HHHhcCCCcccccCC--chhHHHHHhcCcCceeeEEEECCCCcEEEcc
Q 013684 295 -SYFGTMPWLALPFGD--PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 295 -~~~~~~~~~~~p~~~--d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 340 (438)
..++..--..+|+.. .....++..++-..- -++|+|+=|++.+.-
T Consensus 79 ~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHI 126 (238)
T ss_pred HHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEe
Confidence 233332224577753 355778888876654 679999999999873
No 343
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.39 E-value=0.0018 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.752 Sum_probs=28.2
Q ss_pred cccCccCC-CCCceeEEcCCCC---CCccCcccccc
Q 013684 399 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~-~~~~w~~~c~~c~---~~~~~~c~~~~ 430 (438)
|.|+.|++ .-.+-+|+|.+|. |||+..|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 57999998 7789999999997 99999997644
No 344
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.37 E-value=0.00077 Score=45.75 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=25.2
Q ss_pred CCcccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 397 GPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 397 ~~~~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
..+.|+.|+. .-.+-+|+|..| ||||+..|-..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 3578999998 556889999999 89999999754
No 345
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.34 E-value=0.008 Score=46.51 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.0
Q ss_pred EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 74 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 74 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
-+..|+.+|||+|++....|.++..++ .+ +.+..++++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~--~~--i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER--DD--FDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc--cC--CcEEEEECCCC
Confidence 367899999999999999999888764 23 66667777654
No 346
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.015 Score=52.62 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=50.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+++.+++.||++||.+|..+...+..+.+.++ ++.++.+..+. ..++++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~------------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEE------------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhh------------------------hhHHHHHHH
Confidence 77899999999999999999998888888872 25555443332 278899999
Q ss_pred cCccceEEEec
Q 013684 150 IEGIPCLVVLQ 160 (438)
Q Consensus 150 v~~~P~~~lvd 160 (438)
+.+.|.+..+-
T Consensus 68 v~~vp~~~~~~ 78 (227)
T KOG0911|consen 68 VEAVPYFVFFF 78 (227)
T ss_pred HhcCceeeeee
Confidence 99999998885
No 347
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.23 E-value=0.048 Score=40.06 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|+++||++|......|.+ . ++.+..++++.+.+. ...+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEA-------------------LEELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHH-------------------HHHHHHHc
Confidence 467889999999987665553 2 355666777654321 12334444
Q ss_pred CcCceeeEEE
Q 013684 320 DVQGIPCLVI 329 (438)
Q Consensus 320 ~v~~~P~~~l 329 (438)
++.++|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7889999865
No 348
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.22 E-value=0.0094 Score=45.48 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=39.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+.....|.++.. .++++-++.+.+.. .....+.+..+...+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~-------------------~~~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGS-------------------EIQDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence 477889999999998887776433 36666666554421 1124566677888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 56 ~v~~ 59 (82)
T cd03419 56 NVFI 59 (82)
T ss_pred eEEE
Confidence 9753
No 349
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0085 Score=53.76 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+.+.++|.|++.|-|.|+...|.+.++.-++...+ +.+-.|++..- .+.+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kfr 196 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKFR 196 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhee
Confidence 34689999999999999999999999999998876 44444433322 23345565
Q ss_pred c------CccceEEEecCCCCCCCcccccchhHHhhh-CCCCccCChhHHHH
Q 013684 150 I------EGIPCLVVLQPYDDKDDATLHDGVELIYKY-GIRAFPFTKEKLEE 194 (438)
Q Consensus 150 v------~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~-~~~a~p~~~e~l~~ 194 (438)
| +.+||.+|+. +|+-+.+.- .+... ..-.|+++++.+.+
T Consensus 197 is~s~~srQLPT~ilFq----~gkE~~RrP--~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILFQ----KGKEVSRRP--DVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred eccCcccccCCeEEEEc----cchhhhcCc--cccccCCcccccccHHHHHH
Confidence 5 4689999998 565444432 22222 22348888886643
No 350
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.19 E-value=0.01 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|.++|||+|......|.++.. .++++-|+.+.+..+.+ ..+.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~------------------~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQ------------------DYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHH------------------HHHHHHh
Confidence 467889999999999988887543 24566666654422221 3456677
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.++ + +|+.+
T Consensus 50 g~~~~P~v~-~--~g~~i 64 (82)
T cd03419 50 GQRTVPNVF-I--GGKFI 64 (82)
T ss_pred CCCCCCeEE-E--CCEEE
Confidence 889999964 4 46655
No 351
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=96.11 E-value=0.0031 Score=43.36 Aligned_cols=31 Identities=29% Similarity=0.787 Sum_probs=26.3
Q ss_pred ccCccC-CCCCceeEEcCCC-CCCccCcccccc
Q 013684 400 ICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 400 ~c~~C~-~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
.|+.|+ ..-.+-+|+|..| +|||+..|-...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 599999 5566889999999 999999997643
No 352
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.02 E-value=0.0035 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=26.1
Q ss_pred ccCccCC-CCCceeEEcCCC-CCCccCccccc
Q 013684 400 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 429 (438)
Q Consensus 400 ~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~ 429 (438)
.|+.|++ .-.+-+|+|.+| ||||+..|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5899998 566889999999 99999999763
No 353
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.75 E-value=0.026 Score=41.47 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++||++|+.....|.+ .+ +.+..+++|.+.. ....+.+..++..+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE--------------------ALEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH--------------------HHHHHHHHcCCcccC
Confidence 567899999999997766554 23 4455556654422 113444445778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 8764
No 354
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.71 E-value=0.028 Score=43.71 Aligned_cols=83 Identities=20% Similarity=0.171 Sum_probs=49.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC--CC-----HHHHHHhHhcCC-cccccCCChHHHHHHhh
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--ED-----LNAFNNYRACMP-WLAVPYSDLETKKALNR 146 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D--~~-----~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~ 146 (438)
+..|+...||+|....+.+.++...... ++.+....+. .. ............ .....+.+.-....+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4689999999999999999998744322 4777766653 21 111111111100 00000101113367888
Q ss_pred hcCcCccceEEEec
Q 013684 147 KFDIEGIPCLVVLQ 160 (438)
Q Consensus 147 ~~~v~~~P~~~lvd 160 (438)
.+|+.++|++++-|
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 89999999999865
No 355
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.70 E-value=0.04 Score=58.36 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=53.1
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCch
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 311 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~ 311 (438)
.++++.+.|+.|+...|..|......|+++. .+.+ .+.+.....+.+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~----------~i~~~~~~~~~~---------------------- 408 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE----------KLNSEAVNRGEE---------------------- 408 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC----------cEEEEEeccccc----------------------
Confidence 4567788888999888988888777666665 3433 366655554433
Q ss_pred hHHHHHhcCcCceeeEEEECCCCc---EEEc
Q 013684 312 IKELTKYFDVQGIPCLVIIGPEGK---TVTK 339 (438)
Q Consensus 312 ~~~l~~~~~v~~~P~~~lid~~G~---i~~~ 339 (438)
.++.+.|++...|++.+++.+|+ |++.
T Consensus 409 -~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 409 -PESETLPKITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred -hhhHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence 66788999999999999976653 5554
No 356
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.59 E-value=0.061 Score=45.21 Aligned_cols=78 Identities=12% Similarity=0.252 Sum_probs=52.9
Q ss_pred ecccc--CCCEEEEEEecc--CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHH
Q 013684 65 KVSDL--EGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET 140 (438)
Q Consensus 65 ~l~~~--~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (438)
++.++ .+...+|+|... -+|-+....=.|.++.++|.+. ++.++.|+.|..
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~----------------------- 80 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQS----------------------- 80 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCC-----------------------
Confidence 34444 234566666633 2344445555677777777432 377777777754
Q ss_pred HHHHhhhcCcCccceEEEecCCCCCCCccccc
Q 013684 141 KKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 141 ~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..++.+|+|.++||++++. +|+.+.+.
T Consensus 81 -~~LA~~fgV~siPTLl~Fk----dGk~v~~i 107 (132)
T PRK11509 81 -EAIGDRFGVFRFPATLVFT----GGNYRGVL 107 (132)
T ss_pred -HHHHHHcCCccCCEEEEEE----CCEEEEEE
Confidence 7899999999999999998 88887654
No 357
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.57 E-value=0.086 Score=38.41 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=41.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|+.....|.+. ++.+..++++.+.+. ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGEL-------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 4568899999999988877643 245666677655431 24455566
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788998753 666664
No 358
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.28 E-value=0.066 Score=41.53 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=40.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.++..++. ++.+..++++.+... ..++.+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-----------~i~~~~idi~~~~~~-------------------~~~l~~~~ 51 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-----------DFEFRYIDIHAEGIS-------------------KADLEKTV 51 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-----------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 456788999999998888777653322 345666666543211 13344555
Q ss_pred C--cCceeeEEEECCCCcEE
Q 013684 320 D--VQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~--v~~~P~~~lid~~G~i~ 337 (438)
| +..+|.++ + +|+.+
T Consensus 52 g~~~~tVP~if-i--~g~~i 68 (86)
T TIGR02183 52 GKPVETVPQIF-V--DEKHV 68 (86)
T ss_pred CCCCCCcCeEE-E--CCEEe
Confidence 5 37899985 5 46554
No 359
>PHA03050 glutaredoxin; Provisional
Probab=95.26 E-value=0.064 Score=43.60 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|++....|.+.- -...+++++-|+-..+ .......+.+..|-..+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~----i~~~~~~~i~i~~~~~-------------------~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFS----FKRGAYEIVDIKEFKP-------------------ENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcC----CCcCCcEEEECCCCCC-------------------CHHHHHHHHHHcCCCCcC
Confidence 67889999999998766655431 1111355554432111 122236677777888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 72 ~IfI 75 (108)
T PHA03050 72 RIFF 75 (108)
T ss_pred EEEE
Confidence 9865
No 360
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.14 E-value=0.21 Score=45.09 Aligned_cols=113 Identities=19% Similarity=0.364 Sum_probs=79.1
Q ss_pred cCCCCCcc-CCCCCceeecccc-CCCE--EEEEEe-----cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 013684 214 NHDRGYLL-GHPPDEKVPVSSL-VGKT--VGLYFS-----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 284 (438)
Q Consensus 214 ~~~~~f~l-~~~g~~~~~l~~~-~gk~--vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~i 284 (438)
.-..++.+ +.+| +++|.++ .|+- ++-.|. ..-|+.|-..+..+.-....+..+ ++.++.|
T Consensus 44 ~v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~v 112 (211)
T PF05988_consen 44 EVDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVV 112 (211)
T ss_pred cCCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEE
Confidence 33456888 6666 4888775 5653 333333 235999999999997667777765 7888888
Q ss_pred ecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc-----CceeeEEEECCC-CcEEEc
Q 013684 285 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 339 (438)
Q Consensus 285 s~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v-----~~~P~~~lid~~-G~i~~~ 339 (438)
|-. ..+.+..|.+.|+|- +|........+...|++ ...|.+-+|=++ |+|...
T Consensus 113 Sra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 113 SRA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred eCC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 864 678899999999997 88877777777788887 456655444344 566554
No 361
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.12 E-value=1.3 Score=39.10 Aligned_cols=131 Identities=26% Similarity=0.365 Sum_probs=75.8
Q ss_pred HHHhhhcCcCccceEEEecCCCCCCCcccccchhHHhhhCCCCccCChhHHHHHHHHHHhhhhHHHHHhhhhcCCCCCcc
Q 013684 142 KALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLL 221 (438)
Q Consensus 142 ~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~~~~i~~~~~~a~p~~~e~l~~L~~~~~~~~~~~~~~~~~g~~~~~f~l 221 (438)
.++++.+++.. |+++++.+ .+++.....+ . .+..+.+....... ..|-+.
T Consensus 31 ~~~~~~~~~~~-p~i~~~k~--~~~~~~~y~~--------~---~~~~~~l~~fI~~~---------------~~P~v~- 80 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVVYKK--FDEKPVVYDG--------D---KFTPEELKKFIKKN---------------SFPLVP- 80 (184)
T ss_dssp HHHHHHCTCSS-SEEEEEEC--TTTSEEEESS--------S---TTSHHHHHHHHHHH---------------SSTSCE-
T ss_pred HHHHHHhCCCC-CcEEEecc--CCCCceeccc--------c---cCCHHHHHHHHHHh---------------cccccc-
Confidence 57788899998 99999985 1222221111 0 12333343333222 123222
Q ss_pred CCCCCceeeccccCCCE-EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcC
Q 013684 222 GHPPDEKVPVSSLVGKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM 300 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 300 (438)
..+.. .+..-.-.+++ +++.|..............+.+++++++++ +.++.+..+..
T Consensus 81 ~~t~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~----------- 138 (184)
T PF13848_consen 81 ELTPE-NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF----------- 138 (184)
T ss_dssp EESTT-HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------
T ss_pred ccchh-hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------
Confidence 22222 11111123444 777776555566677777777787777654 67777777633
Q ss_pred CCcccccCCchhHHHHHhcCcC--ceeeEEEECCCCcE
Q 013684 301 PWLALPFGDPTIKELTKYFDVQ--GIPCLVIIGPEGKT 336 (438)
Q Consensus 301 ~~~~~p~~~d~~~~l~~~~~v~--~~P~~~lid~~G~i 336 (438)
..+.+.||+. .+|++++++.....
T Consensus 139 ------------~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 ------------PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 4577789997 89999999855543
No 362
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.11 E-value=0.012 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.706 Sum_probs=26.9
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCccccccC
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD 431 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~~ 431 (438)
|.|+.|...+ +=+|+|..| +|||+..|-..+.
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~~~ 33 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNTKN 33 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCCCC
Confidence 5699998854 699999999 9999999986543
No 363
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.09 Score=55.33 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=55.4
Q ss_pred cccCCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 232 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 232 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+.-.+|+++|....+||-+|+.|..+- .++++-+.. .+|.|.+|+++- |..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDv 92 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDV 92 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCH
Confidence 345689999999999999999976542 234444443 388888887531 111
Q ss_pred CchhHHHHHhc-CcCceeeEEEECCCCcEEEc
Q 013684 309 DPTIKELTKYF-DVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 309 ~d~~~~l~~~~-~v~~~P~~~lid~~G~i~~~ 339 (438)
+..-..+++.. |--|+|-++++-|+|+....
T Consensus 93 D~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 93 DSLYMNASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHHHHHHHhccCCCCceeEEECCCCceeee
Confidence 11223344443 34589999999999998864
No 364
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.99 E-value=0.075 Score=40.42 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=38.0
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.+.-++.|+.+|||+|++....|.+ .| +....++++.+.+. ..+.+..+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~---------------------~~~~~~~g~ 55 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG---------------------RSLRAVTGA 55 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH---------------------HHHHHHHCC
Confidence 3455778999999999998776642 34 44444555544221 345556788
Q ss_pred CccceEEE
Q 013684 151 EGIPCLVV 158 (438)
Q Consensus 151 ~~~P~~~l 158 (438)
..+|.+++
T Consensus 56 ~~vP~i~i 63 (79)
T TIGR02190 56 TTVPQVFI 63 (79)
T ss_pred CCcCeEEE
Confidence 89999864
No 365
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.88 E-value=0.051 Score=42.14 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=25.5
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
++.|..+|||+|.+....|.++..+.. ++.+..++++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~ 39 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHA 39 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCC
Confidence 567889999999998877776543321 24455555553
No 366
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=94.82 E-value=0.012 Score=56.34 Aligned_cols=32 Identities=25% Similarity=0.692 Sum_probs=29.2
Q ss_pred cccCccCC-CCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
-.||.|.+ .-.|=+|+|..| |||||.+|-.+.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 58999999 779999999999 999999998653
No 367
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.78 E-value=0.35 Score=45.56 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCCCcc-CCCCCceeeccc-cCCCEEEEEEecC-CChhhhhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEecCCCH
Q 013684 215 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSAR-WCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 290 (438)
Q Consensus 215 ~~~~f~l-~~~g~~~~~l~~-~~gk~vll~F~a~-wC~~C~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~ 290 (438)
.-|++.. +++|+ .+++.+ ++||+.||..+.+ |- ..+...+. ...++|... .+..+++|-|++.++.
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~g---e~~~~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWG---EEMVDSWTSPFLEDFLQE------PYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHH---HHHHHHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence 3578887 88888 777654 6899766655543 42 33333322 234444432 1227899999986442
Q ss_pred H-H-HHHHH-hc-------CCCcccccCCc--hhHHHHHhcCcC--ceeeEEEECCCCcEEEcccchhhhhccccCCCCC
Q 013684 291 T-S-FESYF-GT-------MPWLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 356 (438)
Q Consensus 291 ~-~-~~~~~-~~-------~~~~~~p~~~d--~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~ 356 (438)
- . +..++ .. ..|-.+-+..+ ....+.+.+++. -+.-+||+|++|+|+.... | +-+
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags-------G----~At 238 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS-------G----PAT 238 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc-------C----CCC
Confidence 1 1 11111 11 11333322222 256778888884 5678899999999998842 2 357
Q ss_pred HHHHHHHHHHHH
Q 013684 357 EAKLEFLEKQME 368 (438)
Q Consensus 357 ~~~~~~L~~~i~ 368 (438)
++.++.|.+.+.
T Consensus 239 ~~E~~~L~k~~~ 250 (252)
T PF05176_consen 239 PEELESLWKCVK 250 (252)
T ss_pred HHHHHHHHHHHh
Confidence 778888877664
No 368
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.78 E-value=0.074 Score=42.51 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=34.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||+|++....|.+ .+.++++ +++|.+.+ .......+.+..+...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~--vdid~~~~-----------------~~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAV--HEIDKEPA-----------------GKDIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEE--EEcCCCcc-----------------HHHHHHHHHHhcCCCCcC
Confidence 667888999999987665543 2333554 44443322 111124555556778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 64 ~Vfi 67 (99)
T TIGR02189 64 AVFV 67 (99)
T ss_pred eEEE
Confidence 9754
No 369
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.77 E-value=0.098 Score=39.76 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=40.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHh
Q 013684 239 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 318 (438)
Q Consensus 239 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 318 (438)
-++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ..++.+.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~~ 52 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRAV 52 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHHH
Confidence 4567889999999998877753 1 35555666665432 1344556
Q ss_pred cCcCceeeEEEECCCCcEE
Q 013684 319 FDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 319 ~~v~~~P~~~lid~~G~i~ 337 (438)
.|...+|.++ + +|+.+
T Consensus 53 ~g~~~vP~i~-i--~g~~i 68 (79)
T TIGR02190 53 TGATTVPQVF-I--GGKLI 68 (79)
T ss_pred HCCCCcCeEE-E--CCEEE
Confidence 7889999986 4 56655
No 370
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.68 E-value=0.06 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.6
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 266 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 266 (438)
.++++++.|+.++||+|..+.|.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46889999999999999999999988776553
No 371
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.61 E-value=0.0093 Score=54.23 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=51.9
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
-+++.|+++|||.|....|+|...+.-=.+- ++.+-.|.+..+ .-+.-
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsG 88 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSG 88 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------cccce
Confidence 4788999999999999999998776543322 455555544322 33556
Q ss_pred hcCcCceeeEEEECCCCcEEEccc
Q 013684 318 YFDVQGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 318 ~~~v~~~P~~~lid~~G~i~~~~~ 341 (438)
.|-+.+.||+|=+ ++|..+...|
T Consensus 89 RF~vtaLptIYHv-kDGeFrrysg 111 (248)
T KOG0913|consen 89 RFLVTALPTIYHV-KDGEFRRYSG 111 (248)
T ss_pred eeEEEecceEEEe-eccccccccC
Confidence 7888999999999 9998876543
No 372
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.57 E-value=0.076 Score=40.21 Aligned_cols=55 Identities=15% Similarity=0.367 Sum_probs=35.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|+.+|||+|......|.+ .|.+++.+ +++.+.+ ...++.+..+...+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~--di~~~~~--------------------~~~~~~~~~g~~~vP 51 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEI--RVDGDPA--------------------LRDEMMQRSGRRTVP 51 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEE--EecCCHH--------------------HHHHHHHHhCCCCcC
Confidence 356889999999998777653 33334444 4444432 114555566778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 52 ~i~i 55 (79)
T TIGR02181 52 QIFI 55 (79)
T ss_pred EEEE
Confidence 8754
No 373
>PHA03050 glutaredoxin; Provisional
Probab=94.56 E-value=0.067 Score=43.52 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|......|.+..-.. ..++++-|.-..+..++ ..++.+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----------~~~~~i~i~~~~~~~~~------------------~~~l~~~t 65 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----------GAYEIVDIKEFKPENEL------------------RDYFEQIT 65 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----------CCcEEEECCCCCCCHHH------------------HHHHHHHc
Confidence 56689999999998777665542111 13445444421121122 24566666
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|-..+|.+ +| +|+.+.
T Consensus 66 G~~tVP~I-fI--~g~~iG 81 (108)
T PHA03050 66 GGRTVPRI-FF--GKTSIG 81 (108)
T ss_pred CCCCcCEE-EE--CCEEEe
Confidence 88899997 45 466653
No 374
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.51 E-value=0.066 Score=45.80 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v 112 (438)
.++++++.|+..+||+|+.+.|.+.++..++. ++.+++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEE
Confidence 46899999999999999999999998876642 3555544
No 375
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.46 E-value=0.18 Score=37.49 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|+.++||+|......|.+ . ++.+-.++++.+.+.. .++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence 456788999999998777654 1 3556666776553322 3344556
Q ss_pred CcC-ceeeEEEECCCCcEE
Q 013684 320 DVQ-GIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~-~~P~~~lid~~G~i~ 337 (438)
|.. .+|.++ + +|+.+
T Consensus 47 ~~~~~vP~v~-i--~g~~i 62 (75)
T cd03418 47 GGRRTVPQIF-I--GDVHI 62 (75)
T ss_pred CCCCccCEEE-E--CCEEE
Confidence 666 889764 5 45555
No 376
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.45 E-value=0.095 Score=38.18 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|+++|||+|+.....|.+. + +.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 5678899999999988776653 2 4455556554432 124555666777888
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 53 ~~~~ 56 (72)
T cd02066 53 QIFI 56 (72)
T ss_pred EEEE
Confidence 7653
No 377
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.45 E-value=0.47 Score=36.32 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|......|.+ + ++.+-.++++.+.+.. ..+ +..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~~-------------------~~~-~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEAA-------------------ETL-RAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHH-HHc
Confidence 456788999999987766632 2 5667777777654321 222 335
Q ss_pred CcCceeeEEE
Q 013684 320 DVQGIPCLVI 329 (438)
Q Consensus 320 ~v~~~P~~~l 329 (438)
|...+|++++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7789999854
No 378
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.44 E-value=0.097 Score=39.03 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC-cc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE-GI 153 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~-~~ 153 (438)
+..|+.+|||+|......|++ .+ +.+..++++.+.+. ..++.+..+.. .+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~--------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL--------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH--------------------HHHHHHHhCCCCcc
Confidence 467889999999997776654 33 44445555544321 14555556665 78
Q ss_pred ceEEE
Q 013684 154 PCLVV 158 (438)
Q Consensus 154 P~~~l 158 (438)
|.+++
T Consensus 53 P~v~i 57 (75)
T cd03418 53 PQIFI 57 (75)
T ss_pred CEEEE
Confidence 97654
No 379
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.43 E-value=0.13 Score=41.16 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+. ++.+-.+.+|.+.+... ....+.+..
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----------------~i~~~~vdid~~~~~~~----------------~~~~l~~~t 57 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----------------GVNPAVHEIDKEPAGKD----------------IENALSRLG 57 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCCCEEEEcCCCccHHH----------------HHHHHHHhc
Confidence 4568889999999877755532 23334455554322110 013445556
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.+ ++ +|+.+
T Consensus 58 g~~tvP~V-fi--~g~~i 72 (99)
T TIGR02189 58 CSPAVPAV-FV--GGKLV 72 (99)
T ss_pred CCCCcCeE-EE--CCEEE
Confidence 78899996 46 46655
No 380
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=94.41 E-value=0.11 Score=46.99 Aligned_cols=101 Identities=22% Similarity=0.351 Sum_probs=73.4
Q ss_pred cccCCCCCEEecccc-CCC--EEEEEEe-----ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHh
Q 013684 55 TSTKEIGEEVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126 (438)
Q Consensus 55 ~~~~~~g~~v~l~~~-~gk--~vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~ 126 (438)
.+...+|+ ++|.++ .|+ .++..|- ...|+.|.-....+......+..++ +.++.||-. ..+.+..|.+
T Consensus 50 ~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~ 125 (211)
T PF05988_consen 50 VFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKR 125 (211)
T ss_pred EEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHH
Confidence 37778887 898886 665 3333443 4679999999999988888888875 888877655 6678899999
Q ss_pred cCCcccccCCChHHHHHHhhhcCc-----CccceEEEecC
Q 013684 127 CMPWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQP 161 (438)
Q Consensus 127 ~~~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lvd~ 161 (438)
.|+|...-++..+ ..+...|++ ...|.+-++-+
T Consensus 126 rmGW~~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R 163 (211)
T PF05988_consen 126 RMGWTFPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR 163 (211)
T ss_pred hcCCCceEEEcCC--CcccccccceeccCCCceeEEEEEE
Confidence 9999843343332 455566776 46777777776
No 381
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.38 E-value=0.12 Score=39.17 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=38.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|+.+|||+|......|.+. ++.+-.++++.+.+.. .++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------------~i~~~~~di~~~~~~~-------------------~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------------GVTFTEIRVDGDPALR-------------------DEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------------CCCcEEEEecCCHHHH-------------------HHHHHHhC
Confidence 467889999999988877642 3445555665553221 34555567
Q ss_pred cCceeeEEEECCCCcEE
Q 013684 321 VQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~ 337 (438)
...+|++ ++ +|+.+
T Consensus 47 ~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 47 RRTVPQI-FI--GDVHV 60 (79)
T ss_pred CCCcCEE-EE--CCEEE
Confidence 8889996 45 45554
No 382
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.37 E-value=0.24 Score=39.83 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=52.3
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
.++++|+=..+.||........+++.++...+ ++.+..+.+-... +....+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~----------~~~~y~l~v~~~R-------------------~vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD----------EIPVYYLDVIEYR-------------------PVSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc----------cceEEEEEEEeCc-------------------hhHHHH
Confidence 57888888899999998888888877776553 2678888775443 224789
Q ss_pred HHhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 316 TKYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 316 ~~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
++.|||. .-|.++|| ++|++++..
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEEC
Confidence 9999996 68999999 999999864
No 383
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.16 E-value=0.19 Score=44.54 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
+..-|++.||-+.-..|+-+-.+|..|++++-+ .++|-|++... .-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----------TrFikvnae~~-----------------------PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----------TRFIKVNAEKA-----------------------PF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----------ceEEEEecccC-----------------------ce
Confidence 456799999999888999999999999988764 46787777643 45
Q ss_pred HHHhcCcCceeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHH
Q 013684 315 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 362 (438)
Q Consensus 315 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (438)
+..+++|+.+|++.++ ++|+.+.+-.+.. ..|... .|+.+.++.
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~iVGF~--dLGnkD-dF~te~LE~ 172 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDYVVGFT--DLGNKD-DFTTETLEN 172 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEEEeeHh--hcCCCC-cCcHHHHHH
Confidence 6788999999999999 8998776533222 234321 355555543
No 384
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.11 E-value=0.18 Score=43.65 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred eeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecC
Q 013684 229 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 287 (438)
Q Consensus 229 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d 287 (438)
+.+.+-.++++|+.|+...||+|..+.+.+.++.+++-+. +.+.+++..+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEcc
Confidence 4455566789999999999999999999999999998321 25888888773
No 385
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.00 E-value=0.17 Score=43.78 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=39.5
Q ss_pred eccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 65 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 65 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
.+-.-.++++|+.|+...||+|+.+.+.+.++.+++-+.| ++.+++..+-
T Consensus 6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 3444567899999999999999999999999999985554 5888887663
No 386
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.89 E-value=0.39 Score=35.62 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=34.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|..++||+|......|.+ . ++.+-.++++.+.+.. ..+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence 45678999999998877753 2 4566667776554321 2222 347
Q ss_pred cCceeeEEE
Q 013684 321 VQGIPCLVI 329 (438)
Q Consensus 321 v~~~P~~~l 329 (438)
...+|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 888999644
No 387
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.86 E-value=0.2 Score=37.11 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=34.9
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||.|.+....|.+ .| +.+..++++.+.. ...+....+...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence 567889999999998666653 33 4444555554321 13455556888999
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 53 ~ifi 56 (72)
T cd03029 53 QVFI 56 (72)
T ss_pred eEEE
Confidence 8754
No 388
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.61 E-value=0.3 Score=36.32 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|+.....|.+ . ++.+..++++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 456778999999988776664 2 456667777655432 24556666
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
+-..+|.+ ++ +|+.+.
T Consensus 48 g~~~vP~v-~i--~~~~iG 63 (73)
T cd03027 48 GSSVVPQI-FF--NEKLVG 63 (73)
T ss_pred CCCCcCEE-EE--CCEEEe
Confidence 77788887 45 456654
No 389
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.48 E-value=0.17 Score=48.06 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred CCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCc
Q 013684 71 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 71 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
+-+|||.||-+.++.|..+...|..++.++.. +.++-|..... . +...|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCcc
Confidence 45899999999999999999999999999954 66777755421 1 3456888
Q ss_pred CccceEEEecCCCCCCCccccc
Q 013684 151 EGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 151 ~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
..+|+++++. +|.++...
T Consensus 197 ~~LPtllvYk----~G~l~~~~ 214 (265)
T PF02114_consen 197 KNLPTLLVYK----NGDLIGNF 214 (265)
T ss_dssp TC-SEEEEEE----TTEEEEEE
T ss_pred cCCCEEEEEE----CCEEEEeE
Confidence 9999999988 78776543
No 390
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.35 E-value=0.3 Score=36.16 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+ . ++.+..++++.+.+ ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999998666653 1 35556666664431 13445556
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|.+ ++ +|+.+
T Consensus 47 g~~~vP~i-fi--~g~~i 61 (72)
T cd03029 47 GAMTVPQV-FI--DGELI 61 (72)
T ss_pred CCCCcCeE-EE--CCEEE
Confidence 88999996 56 45555
No 391
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.31 E-value=0.019 Score=52.28 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=50.6
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
--.++.|+|+|||.|+...|.|...+.--.+-+ +.+-.|.+-.. .-|.-+|-+.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n------------------------pgLsGRF~vt 93 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN------------------------PGLSGRFLVT 93 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec------------------------cccceeeEEE
Confidence 356899999999999999999988777654433 56655544322 4566778899
Q ss_pred ccceEEEecCCCCCCCcc
Q 013684 152 GIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 152 ~~P~~~lvd~~~~~G~v~ 169 (438)
+.|+.|=+. +|...
T Consensus 94 aLptIYHvk----DGeFr 107 (248)
T KOG0913|consen 94 ALPTIYHVK----DGEFR 107 (248)
T ss_pred ecceEEEee----ccccc
Confidence 999999877 67654
No 392
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.27 E-value=0.31 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
+..|..+|||+|......|. +.| +.+-.++++.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~ 37 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVP 37 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCH
Confidence 56788999999999776663 344 555555666543
No 393
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.61 Score=39.70 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=77.1
Q ss_pred hhhcCCCCCcc-CCC------CCceeeccc-cCCCEEEEEEecC--CChhhhh-hhHHHHHHHHHHHhhhhhcCCCCCCE
Q 013684 211 LLTNHDRGYLL-GHP------PDEKVPVSS-LVGKTVGLYFSAR--WCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF 279 (438)
Q Consensus 211 ~~g~~~~~f~l-~~~------g~~~~~l~~-~~gk~vll~F~a~--wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~~~~ 279 (438)
.+|+..|+-++ ..- |-..++..+ ++||.|+| |..| ..|.|-. .+|.+.+++++|+.+ ++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV 73 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV 73 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence 35666676655 221 111233333 56777666 5544 6788887 899999999999976 33
Q ss_pred -EEEEEecCCCHHHHHHHHhcCCCc-ccccCCchhHHHHHhcCc-----------CceeeEEEECCCCcEEEcc
Q 013684 280 -EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 280 -~vv~is~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~ 340 (438)
.|+.||++ +.-.+.+|.+..+.- ++.+..|.+.++.+..|. ++.....++ ++|.+..-+
T Consensus 74 D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 74 DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 36666776 555555665555433 677778888888888654 566667778 899887653
No 394
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.12 E-value=0.23 Score=36.93 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+|||.|++....|.+ .| +.+..++++.+.+. ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER--------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHHhCCCCcC
Confidence 456788999999997766654 34 44455565544321 24566666667788
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 8755
No 395
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=93.03 E-value=1.6 Score=37.70 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=70.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-ecCCC----HHHHHHHH----
Q 013684 228 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD----QTSFESYF---- 297 (438)
Q Consensus 228 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~~~~~~~vv~i-s~d~~----~~~~~~~~---- 297 (438)
.++.+.+.||+.+|...|-.-..=....|.+..+.+. |.. +.++...| ++|+. ..-++..+
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---------d~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---------DKYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---------cceeEEEEEecccccccchHHHHHHHHHhh
Confidence 6667788999988887765433333344444444333 432 24565554 55431 11122333
Q ss_pred hcCCCcccccCCchhHHHHHhcCcCc-eeeEEEECCCCcEEEcccchhhhhccccCCCCCHHHHHHHHHHHH
Q 013684 298 GTMPWLALPFGDPTIKELTKYFDVQG-IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME 368 (438)
Q Consensus 298 ~~~~~~~~p~~~d~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~i~ 368 (438)
++++|-. +..|.++.+.+.|+... --.++++|++|+|+... .| ..+++.+++..+.|+
T Consensus 100 k~~p~s~--~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQ--FVLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK 158 (160)
T ss_pred hhCCCcE--EEEcCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence 2344433 34556677888888753 34688999999999863 23 578888877766654
No 396
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.90 E-value=0.33 Score=36.04 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=23.2
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
..|..++||+|+.....|.+ .| +.+-.++++.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCH
Confidence 56788999999998776653 34 445555666543
No 397
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=92.76 E-value=0.4 Score=43.97 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred EEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCC-CCEEEEEEecCCCHHHHH--HhHhcCCccccc-CCCh
Q 013684 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDEDLNAFN--NYRACMPWLAVP-YSDL 138 (438)
Q Consensus 63 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~~~~iv~vs~D~~~~~~~--~~~~~~~~~~~~-~~d~ 138 (438)
...+.+.+|+++||-+--.+|..|...+..|..|..+|...| .|+.++.|+--.....+. +.....+- .+| |-..
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~-~ipVyqq~ 96 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSE-HIPVYQQD 96 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCC-CCceecCC
Confidence 456788899999999999999999999999999999998887 367777777643333332 22233331 122 2112
Q ss_pred HHHHHHhhhcCcCccceEEEecCCCCCCCcccccc
Q 013684 139 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 139 ~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.....+...++-. -=-++|+|+ -|++.+.-.
T Consensus 97 ~~q~dvW~~L~G~-kdD~~iyDR---CGrL~~~i~ 127 (238)
T PF04592_consen 97 ENQPDVWELLNGS-KDDFLIYDR---CGRLTYHIP 127 (238)
T ss_pred ccccCHHHHhCCC-cCcEEEEec---cCcEEEEec
Confidence 2235677777665 345788998 999886643
No 398
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.73 E-value=0.55 Score=37.79 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=51.9
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
..++++|+=.++.||........|.+.++...+. +.+.++.+-..+. ....+++.||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~--------------------vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP--------------------VSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH--------------------HHHHHHHHHT
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch--------------------hHHHHHHHhC
Confidence 3589999999999999999888888888776432 6777776643332 3489999999
Q ss_pred cCc-cceEEEecCCCCCCCccccc
Q 013684 150 IEG-IPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 150 v~~-~P~~~lvd~~~~~G~v~~~~ 172 (438)
|.. -|-++||. +|+++...
T Consensus 75 V~HeSPQ~ili~----~g~~v~~a 94 (105)
T PF11009_consen 75 VKHESPQVILIK----NGKVVWHA 94 (105)
T ss_dssp ----SSEEEEEE----TTEEEEEE
T ss_pred CCcCCCcEEEEE----CCEEEEEC
Confidence 975 79999998 88887653
No 399
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.47 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=22.5
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 115 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D 115 (438)
++.|.-++||+|.+....|. ..|.+++.+-+..+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~ 36 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDD 36 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCC
Confidence 56788899999999776655 44444555544433
No 400
>PRK10638 glutaredoxin 3; Provisional
Probab=92.51 E-value=0.69 Score=35.34 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+..|..+|||+|.+....|.+. ++.+..++++.+.+. ..++.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 4466789999999987776642 344555666654321 13455566
Q ss_pred CcCceeeEEEECCCCcEEE
Q 013684 320 DVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~~ 338 (438)
|...+|+++ + +|+.+.
T Consensus 49 g~~~vP~i~-~--~g~~ig 64 (83)
T PRK10638 49 GRTTVPQIF-I--DAQHIG 64 (83)
T ss_pred CCCCcCEEE-E--CCEEEe
Confidence 788899774 4 576663
No 401
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=0.63 Score=38.27 Aligned_cols=65 Identities=18% Similarity=0.426 Sum_probs=51.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
..|.|+|-|.-.|-|.|..+-..|.++.+.+.+- .+|..+.+|+. ..+-+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV------------------------~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV------------------------PDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh------------------------hhhhhhhc
Confidence 4589999999999999999999999999998654 45555555533 56667789
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
+...|++.++=.
T Consensus 75 l~~p~tvmfFfn 86 (142)
T KOG3414|consen 75 LYDPPTVMFFFN 86 (142)
T ss_pred ccCCceEEEEEc
Confidence 998888877764
No 402
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.40 E-value=0.51 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=39.2
Q ss_pred CCCEEEEEEec----CCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 235 VGKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 235 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
+++.|+|+--. +|||+|......|.+. ++.+..++++.+.+ .
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~----------------- 51 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V----------------- 51 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H-----------------
Confidence 34455554332 6999999877766543 23445555554432 1
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEE
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~ 337 (438)
...+.+..|...+|.+ ++ +|+.+
T Consensus 52 -~~~l~~~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 52 -RQGLKEYSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred -HHHHHHHhCCCCCCEE-EE--CCEEE
Confidence 2456666788899997 45 46665
No 403
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=92.18 E-value=0.096 Score=35.17 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=28.5
Q ss_pred cccCccCCCCCceeEEcCCC-CCCccCcccccc
Q 013684 399 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
|.|+.|...-..=+|||..+ +|||++.|-.+.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G 33 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEG 33 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhCc
Confidence 57999999999999999999 799999997643
No 404
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.07 E-value=0.59 Score=37.11 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CEEEEEEe----cCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 237 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 237 k~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
+.|+|+-. ++|||+|.+....|.+. ++.+..++++.+.+ . .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence 44555443 38999999877766542 34455566654432 1 2
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEE
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~ 338 (438)
..+.+..|...+|.++ + +|+.+.
T Consensus 57 ~~l~~~tg~~tvP~vf-i--~g~~iG 79 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-V--KGEFVG 79 (97)
T ss_pred HHHHHHhCCCCCCEEE-E--CCEEEe
Confidence 3455566778899875 5 466553
No 405
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.98 E-value=0.68 Score=38.54 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=36.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED 117 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~ 117 (438)
+.|+|+|-|.-.|-|.|.++-..|.++++++++- ..|..++.++-
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V 63 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV 63 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc
Confidence 4699999999999999999999999999998654 56666666643
No 406
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.80 E-value=0.92 Score=37.34 Aligned_cols=62 Identities=23% Similarity=0.488 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE-EecCCCHHHHHHHHhcCCCcccccCCchhH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF-VSTDRDQTSFESYFGTMPWLALPFGDPTIK 313 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~-is~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 313 (438)
..|.|+|-|.-.|=|.|..+-..|.++++.+++ +.+|. +.+|+ -+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-----------fa~Iylvdide-----------------------V~ 67 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-----------FAVIYLVDIDE-----------------------VP 67 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-----------ceEEEEEecch-----------------------hh
Confidence 357899999999999999999999999999874 34444 44442 26
Q ss_pred HHHHhcCcCceeeEEEE
Q 013684 314 ELTKYFDVQGIPCLVII 330 (438)
Q Consensus 314 ~l~~~~~v~~~P~~~li 330 (438)
.+.+.|++...|+++++
T Consensus 68 ~~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 68 DFVKMYELYDPPTVMFF 84 (142)
T ss_pred hhhhhhcccCCceEEEE
Confidence 77889999999977665
No 407
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.79 E-value=0.42 Score=37.30 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCEEEEEEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 70 EGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 70 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+++.|+|+--. +|||+|+.....|.+ .+.+++.+ +++.+.+ ....+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~i--dv~~~~~--------------------~~~~l~ 56 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTF--DILEDEE--------------------VRQGLK 56 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEE--EcCCCHH--------------------HHHHHH
Confidence 44566666443 799999987665544 23234444 4443322 225666
Q ss_pred hhcCcCccceEEE
Q 013684 146 RKFDIEGIPCLVV 158 (438)
Q Consensus 146 ~~~~v~~~P~~~l 158 (438)
+..+-..+|.+++
T Consensus 57 ~~~g~~tvP~vfi 69 (90)
T cd03028 57 EYSNWPTFPQLYV 69 (90)
T ss_pred HHhCCCCCCEEEE
Confidence 7678888999754
No 408
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=91.69 E-value=0.72 Score=37.66 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc
Q 013684 258 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 321 (438)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 321 (438)
|.+...++... ++++|.|.+... +..++|.+... ..+|+..|....+.+.+|+
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566554 789999998744 34888887655 5788888888888888776
No 409
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.32 Score=41.38 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=68.4
Q ss_pred HhhccchhHHHHHhhcccccCC------CC-CEEecccc-CCCEEEEEE-eccCCccchh-hHHHHHHHHHHHhcCCCCE
Q 013684 38 LIMSLSQWYVQQLRRRMTSTKE------IG-EEVKVSDL-EGKVTALYF-SANWYPPCGN-FTGVLVDVYEELRNNGSDF 107 (438)
Q Consensus 38 ~~g~~~p~f~~~~~~~~~~~~~------~g-~~v~l~~~-~gk~vll~F-~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~ 107 (438)
.+|..+|..+ +... .| ..++..++ +||.|+|+= -+...|.|.. .+|-+.+++++|+.+|. -
T Consensus 4 ~vg~klP~vt--------f~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D 74 (165)
T COG0678 4 MVGKKLPAVT--------FKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGV-D 74 (165)
T ss_pred ccCCcCCceE--------eEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCC-c
Confidence 4677777766 4444 22 22444444 677654432 2445588887 79999999999999883 2
Q ss_pred EEEEEecCCCHHHHHHhHhcC----CcccccCCChHHHHHHhhhc-----------CcCccceEEEecCCCCCCCccccc
Q 013684 108 EVVFVSSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKF-----------DIEGIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 108 ~iv~vs~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~-----------~v~~~P~~~lvd~~~~~G~v~~~~ 172 (438)
.|+-||++ +......+.+.. ....++... .++.+.. |++......+|. ||.+..-.
T Consensus 75 ~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~----geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~~~ 145 (165)
T COG0678 75 EIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGN----GEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEKLF 145 (165)
T ss_pred eEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCC----chhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEEEE
Confidence 66777777 344444444433 233344322 3444443 344555566666 77665443
Q ss_pred c
Q 013684 173 G 173 (438)
Q Consensus 173 ~ 173 (438)
.
T Consensus 146 i 146 (165)
T COG0678 146 I 146 (165)
T ss_pred e
Confidence 3
No 410
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=91.50 E-value=0.15 Score=35.46 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=27.7
Q ss_pred CCcccCccCCCC---CceeEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~---~~w~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+-.|+.|++.- ..-.|+|..|++-.|.+|....+
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 567999999887 56679999999999999997553
No 411
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.21 E-value=0.46 Score=42.96 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCCCcc-CCCCCceeecccc-CCCEEEE---EEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEec
Q 013684 216 DRGYLL-GHPPDEKVPVSSL-VGKTVGL---YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 286 (438)
Q Consensus 216 ~~~f~l-~~~g~~~~~l~~~-~gk~vll---~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~ 286 (438)
..++.+ +.+|+ .+|+++ .||-.|| ++++| -||.|-..+.++.-....+... ++.++.||-
T Consensus 52 ~K~Y~Fe~~~G~--~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR 120 (247)
T COG4312 52 DKDYVFETENGK--KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR 120 (247)
T ss_pred cceeEeecCCcc--hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence 456777 66664 778775 5653332 33455 4999999999998777777654 788888885
Q ss_pred CCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCc
Q 013684 287 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 321 (438)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 321 (438)
- ..+++..+-+.|+|- ||........+...|.+
T Consensus 121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 3 678888898999997 88877766777777755
No 412
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.11 E-value=0.54 Score=49.33 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
..+.+..-+..|..++||+|......+++++... .+++.-.| |.... .++.+
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i--d~~~~----------------------~~~~~ 163 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI--DGALF----------------------QDEVE 163 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE--EchhC----------------------HhHHH
Confidence 4445567799999999999998888877766652 23554444 32221 67788
Q ss_pred hcCcCccceEEE
Q 013684 147 KFDIEGIPCLVV 158 (438)
Q Consensus 147 ~~~v~~~P~~~l 158 (438)
.|++.++|++++
T Consensus 164 ~~~v~~VP~~~i 175 (517)
T PRK15317 164 ARNIMAVPTVFL 175 (517)
T ss_pred hcCCcccCEEEE
Confidence 899999999875
No 413
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.53 E-value=0.35 Score=42.59 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+++.++.|+...||+|+.+.+.+.++.+++.. ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcC
Confidence 679999999999999999999999999888733 35555443
No 414
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.84 Score=36.75 Aligned_cols=63 Identities=27% Similarity=0.355 Sum_probs=37.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+|.|.-+||++|......|.+ .+.+..++-++-+.+.. ..+..+.+.-+-..+|
T Consensus 16 VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~-------------------eiq~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGS-------------------EIQKALKKLTGQRTVP 69 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcH-------------------HHHHHHHHhcCCCCCC
Confidence 566888999999995444443 33335555443332222 2234455555667899
Q ss_pred eEEEecCCCCCCCcc
Q 013684 155 CLVVLQPYDDKDDAT 169 (438)
Q Consensus 155 ~~~lvd~~~~~G~v~ 169 (438)
.+|+ +|+.+
T Consensus 70 ~vFI------~Gk~i 78 (104)
T KOG1752|consen 70 NVFI------GGKFI 78 (104)
T ss_pred EEEE------CCEEE
Confidence 9887 66665
No 415
>PRK10638 glutaredoxin 3; Provisional
Probab=90.17 E-value=0.66 Score=35.45 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
+..|..+|||+|++....|.+ .| +....+++|.+.+ ...++.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence 557778999999997766653 33 3334455554422 114556666778899
Q ss_pred eEEE
Q 013684 155 CLVV 158 (438)
Q Consensus 155 ~~~l 158 (438)
.+++
T Consensus 55 ~i~~ 58 (83)
T PRK10638 55 QIFI 58 (83)
T ss_pred EEEE
Confidence 7744
No 416
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.04 E-value=0.73 Score=36.57 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCEEEEEEe----ccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
.+.|+|+-. ++|||+|.+....|.+ .|.+++ .++++.+.+ ....+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~--~~di~~~~~--------------------~~~~l~~ 61 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFA--YVNVLEDPE--------------------IRQGIKE 61 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEE--EEECCCCHH--------------------HHHHHHH
Confidence 345555544 3899999997666554 232344 445543322 1245666
Q ss_pred hcCcCccceEEE
Q 013684 147 KFDIEGIPCLVV 158 (438)
Q Consensus 147 ~~~v~~~P~~~l 158 (438)
..|-..+|.+++
T Consensus 62 ~tg~~tvP~vfi 73 (97)
T TIGR00365 62 YSNWPTIPQLYV 73 (97)
T ss_pred HhCCCCCCEEEE
Confidence 667778998865
No 417
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.66 E-value=2.1 Score=36.02 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=46.0
Q ss_pred CEEEEEEecC--CChh-hh-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchh
Q 013684 237 KTVGLYFSAR--WCIP-CE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 312 (438)
Q Consensus 237 k~vll~F~a~--wC~~-C~-~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~ 312 (438)
..-+|.|.-. .|.. +. .....|.+++++|+++ .+.+++++.+..
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~----------------------- 68 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK---------PWGWLWTEAGAQ----------------------- 68 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------
Confidence 3555656432 2332 32 3677788889888864 477888877754
Q ss_pred HHHHHhcCcC--ceeeEEEECCCCc
Q 013684 313 KELTKYFDVQ--GIPCLVIIGPEGK 335 (438)
Q Consensus 313 ~~l~~~~~v~--~~P~~~lid~~G~ 335 (438)
..+.+.||+. ++|++++++.++.
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccC
Confidence 3478889985 5999999988765
No 418
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.44 E-value=0.62 Score=42.15 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=62.6
Q ss_pred cccCCCCCEEecccc-CCCEEEE---EEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHh
Q 013684 55 TSTKEIGEEVKVSDL-EGKVTAL---YFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 126 (438)
Q Consensus 55 ~~~~~~g~~v~l~~~-~gk~vll---~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~ 126 (438)
.+...+|+ .+|.++ .||-.|| ++++ ..|+.|.-....+.-....+...+ +.++.||-- ..+++..+.+
T Consensus 56 ~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~ 131 (247)
T COG4312 56 VFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKR 131 (247)
T ss_pred EeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHH
Confidence 46677885 788886 6663333 2333 479999999999988888887754 888888644 6678889999
Q ss_pred cCCcccccCCChHHHHHHhhhcCc
Q 013684 127 CMPWLAVPYSDLETKKALNRKFDI 150 (438)
Q Consensus 127 ~~~~~~~~~~d~~~~~~l~~~~~v 150 (438)
.|+|..-.+++.+ ..+...|++
T Consensus 132 rmGW~f~w~Ss~~--s~Fn~Df~v 153 (247)
T COG4312 132 RMGWQFPWVSSTD--SDFNRDFQV 153 (247)
T ss_pred hcCCcceeEeccC--ccccccccc
Confidence 9999854454433 445555655
No 419
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=89.12 E-value=2.4 Score=35.39 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.1
Q ss_pred CCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHH
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 314 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 314 (438)
..|.|+|-|.-.|=|.|.++-..|.+++++.+.- ..|..+.++.- +.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pd 65 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PD 65 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HC
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hh
Confidence 4689999999999999999999999999998743 44555566533 45
Q ss_pred HHHhcCcCceeeE
Q 013684 315 LTKYFDVQGIPCL 327 (438)
Q Consensus 315 l~~~~~v~~~P~~ 327 (438)
+.++|.+. .|.+
T Consensus 66 fn~~yel~-dP~t 77 (133)
T PF02966_consen 66 FNQMYELY-DPCT 77 (133)
T ss_dssp CHHHTTS--SSEE
T ss_pred hhcccccC-CCeE
Confidence 67788888 6744
No 420
>PRK10824 glutaredoxin-4; Provisional
Probab=89.07 E-value=0.63 Score=38.23 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCEEEEEEec----cCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhh
Q 013684 71 GKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR 146 (438)
Q Consensus 71 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 146 (438)
...|+|+--. +|||+|++....|.+. +.++..+ .++.+.+ ....+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~i--di~~d~~--------------------~~~~l~~ 64 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYV--DILQNPD--------------------IRAELPK 64 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEE--EecCCHH--------------------HHHHHHH
Confidence 3455555443 6999999977766553 2234444 4443322 1144445
Q ss_pred hcCcCccceEEEecCCCCCCCcc
Q 013684 147 KFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 147 ~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
.-+-..+|..|+ +|+.+
T Consensus 65 ~sg~~TVPQIFI------~G~~I 81 (115)
T PRK10824 65 YANWPTFPQLWV------DGELV 81 (115)
T ss_pred HhCCCCCCeEEE------CCEEE
Confidence 556678898887 56555
No 421
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=1.7 Score=33.06 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred EEEEecCCChhhhhhhHHHH
Q 013684 240 GLYFSARWCIPCEKFMPKLL 259 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~ 259 (438)
+..|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999998877666
No 422
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=88.81 E-value=1.3 Score=33.68 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=41.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+.|+-|......|.++... ..+.+..|+++.+ .++.++|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------------~~~~l~~vDI~~d-----------------------~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------------FPFELEEVDIDED-----------------------PELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------------STCEEEEEETTTT-----------------------HHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------------cCceEEEEECCCC-----------------------HHHHHHh
Confidence 5677889999999988877765432 2578999998855 5578889
Q ss_pred CcCceeeEEEEC
Q 013684 320 DVQGIPCLVIIG 331 (438)
Q Consensus 320 ~v~~~P~~~lid 331 (438)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 95 799866554
No 423
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=1.2 Score=35.94 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
+|.|.-+|||+|.....-|.+ +. .+..|+-+.-+.+-.++++++ .+.-
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~----------v~~~vvELD~~~~g~eiq~~l------------------~~~t 63 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG----------VNPKVVELDEDEDGSEIQKAL------------------KKLT 63 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC----------CCCEEEEccCCCCcHHHHHHH------------------HHhc
Confidence 456888999999994443333 32 234555555444443444433 3334
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|-+.+|.+| | +|+.+
T Consensus 64 g~~tvP~vF-I--~Gk~i 78 (104)
T KOG1752|consen 64 GQRTVPNVF-I--GGKFI 78 (104)
T ss_pred CCCCCCEEE-E--CCEEE
Confidence 556888866 4 67777
No 424
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=88.44 E-value=0.29 Score=33.32 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.1
Q ss_pred CCcccCccCCCCCc---eeEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~~~---w~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+..|..|++.-.+ ..|+|..|++-.|++|+...+
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 45679999887664 889999999999999997554
No 425
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=5.9 Score=38.03 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=60.7
Q ss_pred cccCCCEEEEEEecC----CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCccccc
Q 013684 232 SSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 307 (438)
Q Consensus 232 ~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~ 307 (438)
.-.++=.++++|.|. .|.-|+....++.-+++.+.... + ..++-++.+-.+|-++
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~---~-~sn~tklFF~~Vd~~e----------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNS---P-FSNGTKLFFCMVDYDE----------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccC---C-CCCcceEEEEEEeccc-----------------
Confidence 334454577778775 59999999999999998887540 0 0233445555555332
Q ss_pred CCchhHHHHHhcCcCceeeEEEECCC-CcEEEcccchhhhhcc
Q 013684 308 GDPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLINLYQ 349 (438)
Q Consensus 308 ~~d~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~~~~g 349 (438)
..++.+.++++..|+++++.|. |+.. +....+....|
T Consensus 115 ----~p~~Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g 152 (331)
T KOG2603|consen 115 ----SPQVFQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLG 152 (331)
T ss_pred ----cHHHHHHhcccCCCeEEEeCCCccccc-cCccchhhhcc
Confidence 3778999999999999999654 5554 44444444443
No 426
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.23 E-value=4.9 Score=33.12 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=51.3
Q ss_pred ccccCCCEEEEEEecC--CChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 013684 231 VSSLVGKTVGLYFSAR--WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 308 (438)
Q Consensus 231 l~~~~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~ 308 (438)
+++++++.-+|..+|+ .-+.-..+...|.+....+.++ ++.++.|.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 5566775544444554 2334455555555555556554 66666663332211 011222
Q ss_pred CchhHHHHHhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 309 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 309 ~d~~~~l~~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
......+.+.|++. +--+++||++||.+..+.
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~ 95 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRW 95 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEec
Confidence 23456788889864 234889999999998874
No 427
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=88.16 E-value=0.19 Score=35.10 Aligned_cols=25 Identities=40% Similarity=1.052 Sum_probs=21.2
Q ss_pred CcccCccCCC---CCceeEEcCCCCCCc
Q 013684 398 PFICCDCDEQ---GSGWAYQCLECGYEV 422 (438)
Q Consensus 398 ~~~c~~C~~~---~~~w~~~c~~c~~~~ 422 (438)
.|+|++|+.. .++=..+|.||+|.+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHH
Confidence 5999999864 577889999999976
No 428
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.00 E-value=1.3 Score=46.54 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=45.0
Q ss_pred ccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHh
Q 013684 66 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN 145 (438)
Q Consensus 66 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 145 (438)
+..+.++.-+..|..+.||+|......++++.... .+++.-.| |.... .++.
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~i--d~~~~----------------------~~~~ 163 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMI--DGALF----------------------QDEV 163 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEE--EchhC----------------------HHHH
Confidence 34445677799999999999998777776666553 23443333 32211 6778
Q ss_pred hhcCcCccceEEE
Q 013684 146 RKFDIEGIPCLVV 158 (438)
Q Consensus 146 ~~~~v~~~P~~~l 158 (438)
+.|++.++|++++
T Consensus 164 ~~~~v~~VP~~~i 176 (515)
T TIGR03140 164 EALGIQGVPAVFL 176 (515)
T ss_pred HhcCCcccCEEEE
Confidence 8999999999876
No 429
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.08 E-value=2.7 Score=31.30 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcC
Q 013684 241 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 320 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 320 (438)
..|++..||.|......|.++. +..=+|.+-.+-..+++|+.-.. +.| .=+-.+.+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~----------------v~yd~VeIt~Sm~NlKrFl~lRD--s~~-----~Fd~vk~~g 61 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN----------------VDYDFVEITESMANLKRFLHLRD--SRP-----EFDEVKSNG 61 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC----------------CCceeeehhhhhhhHHHHHhhhc--cch-----hHHhhhhcC
Confidence 5689999999988777666542 33334444556667777775211 000 112245667
Q ss_pred cCceeeEEEECCCCcEEE
Q 013684 321 VQGIPCLVIIGPEGKTVT 338 (438)
Q Consensus 321 v~~~P~~~lid~~G~i~~ 338 (438)
--|+|.+.+ .+|+++-
T Consensus 62 yiGIPall~--~d~~vVl 77 (85)
T COG4545 62 YIGIPALLT--DDGKVVL 77 (85)
T ss_pred cccceEEEe--CCCcEEE
Confidence 789998654 4777764
No 430
>PRK10824 glutaredoxin-4; Provisional
Probab=86.02 E-value=1.4 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.8
Q ss_pred CEEEEEEec----CCChhhhhhhHHHHHH
Q 013684 237 KTVGLYFSA----RWCIPCEKFMPKLLSI 261 (438)
Q Consensus 237 k~vll~F~a----~wC~~C~~~~p~l~~l 261 (438)
+.|+|+--. +|||+|.+....|.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 345554333 5999999987766654
No 431
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=1.5 Score=46.39 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=50.7
Q ss_pred cccCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 67 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 67 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
..-++|+++|....+||--|..|..+= .++++-+++. +|-|.+|+.+. |..|.-. ..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Y-m~ 98 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLY-MN 98 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHH-HH
Confidence 344789999999999999999886432 2244444332 45555564432 1112222 22
Q ss_pred Hhhh-cCcCccceEEEecCCCCCCCcccc
Q 013684 144 LNRK-FDIEGIPCLVVLQPYDDKDDATLH 171 (438)
Q Consensus 144 l~~~-~~v~~~P~~~lvd~~~~~G~v~~~ 171 (438)
+++. -|--+.|-++++-| ||+..+.
T Consensus 99 ~~q~~tG~GGWPLtVfLTP---d~kPFfa 124 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTP---DGKPFFA 124 (667)
T ss_pred HHHHhccCCCCceeEEECC---CCceeee
Confidence 2332 24568999999999 9988754
No 432
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=85.30 E-value=1.5 Score=33.35 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=41.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccc
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 154 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P 154 (438)
++.|..+.|+-|......|.++..+ ..+++..|+++.+ .++.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d------------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDED------------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTT------------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCC------------------------HHHHHHhcC-CCC
Confidence 6789999999999988877765444 2488888888855 557778886 599
Q ss_pred eEEEec
Q 013684 155 CLVVLQ 160 (438)
Q Consensus 155 ~~~lvd 160 (438)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 877755
No 433
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.03 E-value=0.91 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCEEEEEEecCCChhhhhhhHHH---HHHHHHHHh
Q 013684 235 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ 267 (438)
Q Consensus 235 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~ 267 (438)
.|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 478889999999999999999866 566666653
No 434
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.83 E-value=0.64 Score=27.24 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=20.9
Q ss_pred ccCccCCCCCceeEEcCCCCCCc
Q 013684 400 ICCDCDEQGSGWAYQCLECGYEV 422 (438)
Q Consensus 400 ~c~~C~~~~~~w~~~c~~c~~~~ 422 (438)
.|+.|..+-+.=.-.|..|||++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58999999999999999999986
No 435
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=83.12 E-value=2.4 Score=37.79 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+..-|++.||-+.-..|+-+-..|..+++.+-+ ..+|-|++... .-+...++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~------------------------PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA------------------------PFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC------------------------ceeeeeee
Confidence 457899999999999999999999999988733 45666655432 45677899
Q ss_pred cCccceEEEecCCCCCCCccc
Q 013684 150 IEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 150 v~~~P~~~lvd~~~~~G~v~~ 170 (438)
|..+|++.++. +|..+.
T Consensus 135 IkVLP~v~l~k----~g~~~D 151 (211)
T KOG1672|consen 135 IKVLPTVALFK----NGKTVD 151 (211)
T ss_pred eeEeeeEEEEE----cCEEEE
Confidence 99999999998 675553
No 436
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.21 E-value=1.3 Score=40.42 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=30.9
Q ss_pred cCCCEEEEEEeccCCccchhhHHHH---HHHHHHHhcCCCCEEEEEE
Q 013684 69 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV 112 (438)
Q Consensus 69 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~v 112 (438)
..|++.+++|+.-.||+|..+.+.+ ..+.+.+.+. +.++.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~ 78 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY 78 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence 3578899999999999999999866 6666666433 455544
No 437
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.44 E-value=2.8 Score=42.64 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=39.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhc
Q 013684 240 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 319 (438)
Q Consensus 240 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 319 (438)
++.|..+|||+|.+....|.+. ++.+-.|++|.+.. ..++.++.+ ...+.+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~----------------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~ 56 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN----------------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEE 56 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------------CCCeEEEECCCChh-HHHHHHHHh----------hccccccC
Confidence 5678899999999877665542 34555566664432 222222111 01134446
Q ss_pred CcCceeeEEEECCCCcEE
Q 013684 320 DVQGIPCLVIIGPEGKTV 337 (438)
Q Consensus 320 ~v~~~P~~~lid~~G~i~ 337 (438)
|...+|++++ +|+.+
T Consensus 57 g~~tvP~ifi---~~~~i 71 (410)
T PRK12759 57 HIRTVPQIFV---GDVHI 71 (410)
T ss_pred CCCccCeEEE---CCEEE
Confidence 8889999754 45544
No 438
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.63 E-value=4.3 Score=34.91 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=42.3
Q ss_pred EEecccc-CCCEEEEEEe--ccCCcc-chhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcC
Q 013684 63 EVKVSDL-EGKVTALYFS--ANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM 128 (438)
Q Consensus 63 ~v~l~~~-~gk~vll~F~--a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~ 128 (438)
+++++++ +||-++| |. +..-|. |+...|-+.+-+++|+.+|. -+|+-|+++ ++...+.+.+.+
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVn-DpFv~~aW~k~~ 100 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVN-DPFVMKAWAKSL 100 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecC-cHHHHHHHHhhc
Confidence 6888886 7765444 43 334466 67789999999999999883 356667777 444444444433
No 439
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.23 E-value=3.4 Score=42.03 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.4
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCH
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL 118 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~ 118 (438)
++.|..+|||+|++....|.+ .|.+++. |++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~--idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQ--ISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEE--EECCCCh
Confidence 678899999999987665554 3444554 4555443
No 440
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.93 E-value=3.9 Score=36.30 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred cCCCCCEEecccc--CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEe
Q 013684 57 TKEIGEEVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 113 (438)
Q Consensus 57 ~~~~g~~v~l~~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs 113 (438)
.+..|+.|...++ +.+.|+...--+.|-.|+++...|.++..-+...| +.+++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 3789999999998 45677777779999999999999999977777766 7788775
No 441
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=78.66 E-value=0.77 Score=30.85 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=27.3
Q ss_pred CCcccCccCCCCCce--eEEcCCCCCCccCccccccC
Q 013684 397 GPFICCDCDEQGSGW--AYQCLECGYEVHPKCVRAVD 431 (438)
Q Consensus 397 ~~~~c~~C~~~~~~w--~~~c~~c~~~~~~~c~~~~~ 431 (438)
.+..|..|++.-.+- .|+|..|++-.|.+|+....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 456899998764321 68999999999999997543
No 442
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=77.89 E-value=2.1 Score=34.62 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.7
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..+...||+..+|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 789999999999999999 89988865
No 443
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=77.78 E-value=6.7 Score=31.90 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc----ee
Q 013684 251 CEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IP 325 (438)
Q Consensus 251 C~~~~p~l~~l~~~~~-~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~----~P 325 (438)
-......+.+++++++ ++ +.++.++.+.. ....+.||+.. .|
T Consensus 33 ~~~~~~~~~~vAk~fk~gk----------i~Fv~~D~~~~-----------------------~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK----------LNFAVADKEDF-----------------------SHELEEFGLDFSGGEKP 79 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe----------EEEEEEcHHHH-----------------------HHHHHHcCCCcccCCCC
Confidence 3456777888888887 44 44444443322 33678899974 99
Q ss_pred eEEEECCCC
Q 013684 326 CLVIIGPEG 334 (438)
Q Consensus 326 ~~~lid~~G 334 (438)
.+.+++.++
T Consensus 80 ~~~i~~~~~ 88 (111)
T cd03073 80 VVAIRTAKG 88 (111)
T ss_pred EEEEEeCCC
Confidence 999998766
No 444
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=18 Score=34.90 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=56.6
Q ss_pred cccCCCEEEEEEec----cCCccchhhHHHHHHHHHHHhcCCCC---EEEEEEecCCCHHHHHHhHhcCCcccccCCChH
Q 013684 67 SDLEGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSD---FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE 139 (438)
Q Consensus 67 ~~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~---~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~ 139 (438)
...++-.++++|.| ..|.-|+.+..++.-++..+...+.+ ..+.+--+|-++.
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-------------------- 115 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-------------------- 115 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc--------------------
Confidence 33455678888886 57999999999999998887665321 3344444443321
Q ss_pred HHHHHhhhcCcCccceEEEecCCCCCCCcc
Q 013684 140 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 169 (438)
Q Consensus 140 ~~~~l~~~~~v~~~P~~~lvd~~~~~G~v~ 169 (438)
.++.+.++++..|+++++.+ ..|...
T Consensus 116 --p~~Fq~l~ln~~P~l~~f~P--~~~n~~ 141 (331)
T KOG2603|consen 116 --PQVFQQLNLNNVPHLVLFSP--AKGNKK 141 (331)
T ss_pred --HHHHHHhcccCCCeEEEeCC--Cccccc
Confidence 78899999999999999987 344444
No 445
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=76.48 E-value=2.3 Score=28.60 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=17.2
Q ss_pred cccCccCCC-----CCceeEEcCCCCC
Q 013684 399 FICCDCDEQ-----GSGWAYQCLECGY 420 (438)
Q Consensus 399 ~~c~~C~~~-----~~~w~~~c~~c~~ 420 (438)
+.|++|+.. ...-.|+|..|.+
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 789999953 4457889999975
No 446
>PHA00626 hypothetical protein
Probab=75.28 E-value=2.3 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=11.2
Q ss_pred ceeEEcCCCCCCcc
Q 013684 410 GWAYQCLECGYEVH 423 (438)
Q Consensus 410 ~w~~~c~~c~~~~~ 423 (438)
.=.|.|.+|+|.+-
T Consensus 21 snrYkCkdCGY~ft 34 (59)
T PHA00626 21 SDDYVCCDCGYNDS 34 (59)
T ss_pred CcceEcCCCCCeec
Confidence 45799999999764
No 447
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=75.14 E-value=22 Score=28.79 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHH---HHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCc--eee
Q 013684 252 EKFMPKLLSIYQK---IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG--IPC 326 (438)
Q Consensus 252 ~~~~p~l~~l~~~---~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~--~P~ 326 (438)
......+.+++++ ++++ +.+|.++.+.. ....+.||++. +|.
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk----------i~Fv~~d~~~~-----------------------~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA----------INFLTADGDKF-----------------------RHPLLHLGKTPADLPV 76 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce----------EEEEEEechHh-----------------------hhHHHHcCCCHhHCCE
Confidence 5567778888888 7654 55555554432 33788899986 899
Q ss_pred EEEECCCC
Q 013684 327 LVIIGPEG 334 (438)
Q Consensus 327 ~~lid~~G 334 (438)
+.+.+-++
T Consensus 77 i~i~~~~~ 84 (111)
T cd03072 77 IAIDSFRH 84 (111)
T ss_pred EEEEcchh
Confidence 99998765
No 448
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=74.34 E-value=23 Score=35.48 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHHhcCcCceeeEEEECCCCcEEEc
Q 013684 313 KELTKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 313 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..++..|-+..+|..|+|+..|+-+..
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEE
Confidence 567788889999999999999998876
No 449
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.30 E-value=4.9 Score=39.98 Aligned_cols=24 Identities=21% Similarity=0.718 Sum_probs=21.4
Q ss_pred CcccCccCCCCCceeEEcCCC-CCC
Q 013684 398 PFICCDCDEQGSGWAYQCLEC-GYE 421 (438)
Q Consensus 398 ~~~c~~C~~~~~~w~~~c~~c-~~~ 421 (438)
.+.|++|+-....|.+.|..| +|+
T Consensus 354 ~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 354 RYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CEECCCCCCCCccceeECcCCCCcc
Confidence 478999999999999999999 454
No 450
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=74.27 E-value=40 Score=33.12 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=47.2
Q ss_pred CCEEEEEEecCCCh--hhhhh---hHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCc
Q 013684 236 GKTVGLYFSARWCI--PCEKF---MPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 310 (438)
Q Consensus 236 gk~vll~F~a~wC~--~C~~~---~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d 310 (438)
-+.++|+|+.+--. .-++. .-.+-+|..+.-+. .++.+..|++..+
T Consensus 51 yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd--------------------- 101 (383)
T PF01216_consen 51 YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD--------------------- 101 (383)
T ss_dssp -SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT---------------------
T ss_pred hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH---------------------
Confidence 36788888876422 22221 12233455555443 3788888888766
Q ss_pred hhHHHHHhcCcCceeeEEEECCCCcEEEccc
Q 013684 311 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 341 (438)
Q Consensus 311 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 341 (438)
..+++++|+...++++++ ++|+++..+|
T Consensus 102 --~klAKKLgv~E~~SiyVf-kd~~~IEydG 129 (383)
T PF01216_consen 102 --AKLAKKLGVEEEGSIYVF-KDGEVIEYDG 129 (383)
T ss_dssp --HHHHHHHT--STTEEEEE-ETTEEEEE-S
T ss_pred --HHHHHhcCccccCcEEEE-ECCcEEEecC
Confidence 789999999999999999 9999988765
No 451
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=73.72 E-value=1.2 Score=47.25 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=26.7
Q ss_pred CcccCccCCCC-CceeEEcCCC-CCCccCcccc
Q 013684 398 PFICCDCDEQG-SGWAYQCLEC-GYEVHPKCVR 428 (438)
Q Consensus 398 ~~~c~~C~~~~-~~w~~~c~~c-~~~~~~~c~~ 428 (438)
.-.|..|++.- -|.+|+|-.| |||||+.|-.
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~ 635 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFF 635 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHhh
Confidence 45899998765 7899999999 9999999964
No 452
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=73.52 E-value=7.8 Score=36.54 Aligned_cols=119 Identities=11% Similarity=0.109 Sum_probs=67.1
Q ss_pred cchhHHHHHhhcccccCCCCCEEeccc-cCCCEEEEEEeccCCccchhhHHHHHH-HHHHHhcC-CCCEEEEEEecCCCH
Q 013684 42 LSQWYVQQLRRRMTSTKEIGEEVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVD-VYEELRNN-GSDFEVVFVSSDEDL 118 (438)
Q Consensus 42 ~~p~f~~~~~~~~~~~~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~~~-~~~~~iv~vs~D~~~ 118 (438)
.+|++. ..++.|+.+++.+ ++||+.||..+++ ..-..+...+.. ..+++... +.+++++-|++-+..
T Consensus 100 yFP~l~--------g~tL~g~~~~~~~~l~gkvSlV~l~s~--~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 100 YFPNLQ--------GKTLAGNKVDTTDLLRGKVSLVCLFSS--AWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW 169 (252)
T ss_pred cCCCCc--------cccCCCCCcccccccCCceEEEEEeeh--HHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH
Confidence 457777 8888998887766 4899766555533 122233333322 33334332 126999999986543
Q ss_pred H-H-HHHhHh-c----CC---cccccCCChH-HHHHHhhhcCcC--ccceEEEecCCCCCCCcccccc
Q 013684 119 N-A-FNNYRA-C----MP---WLAVPYSDLE-TKKALNRKFDIE--GIPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 119 ~-~-~~~~~~-~----~~---~~~~~~~d~~-~~~~l~~~~~v~--~~P~~~lvd~~~~~G~v~~~~~ 173 (438)
- . +...+. . .| |..+-+...+ ....+.+.+++. .+..+||||. +|+|.....
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~---~grIRWags 234 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDP---NGRIRWAGS 234 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECC---CCeEEeCcc
Confidence 2 1 112221 1 11 2211111111 236788888875 5788999999 999998754
No 453
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=72.73 E-value=1.4 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.790 Sum_probs=13.5
Q ss_pred cccCccCCCCCce---eEEcCCCCCCc
Q 013684 399 FICCDCDEQGSGW---AYQCLECGYEV 422 (438)
Q Consensus 399 ~~c~~C~~~~~~w---~~~c~~c~~~~ 422 (438)
|.|..|+..-..= .-+|.+|+|.+
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 5677777544322 22688888764
No 454
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=70.25 E-value=21 Score=30.96 Aligned_cols=104 Identities=12% Similarity=0.276 Sum_probs=60.4
Q ss_pred EEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEE-ecCCC--------HHHHHHhHhcCCcccc
Q 013684 63 EVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV-SSDED--------LNAFNNYRACMPWLAV 133 (438)
Q Consensus 63 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~v-s~D~~--------~~~~~~~~~~~~~~~~ 133 (438)
..+...+.||+.+|...|- -+.-+++...|.+..++.+-.+..++...| +.|+. ....++-.+++||..+
T Consensus 29 ~W~s~~l~GKVrviq~iAG-r~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~ 107 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAG-RSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQF 107 (160)
T ss_pred ccCccccCCCEEEEEEecc-CCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEE
Confidence 3345667899988877754 234455554454444443222223544443 55531 1233344446788876
Q ss_pred cCCChHHHHHHhhhcCcCc-cceEEEecCCCCCCCcccccc
Q 013684 134 PYSDLETKKALNRKFDIEG-IPCLVVLQPYDDKDDATLHDG 173 (438)
Q Consensus 134 ~~~d~~~~~~l~~~~~v~~-~P~~~lvd~~~~~G~v~~~~~ 173 (438)
.. |.+ +.+.+.+++.. --.++++|+ +|++.+..-
T Consensus 108 vl-D~~--G~~~~aW~L~~~~SaiiVlDK---~G~V~F~k~ 142 (160)
T PF09695_consen 108 VL-DSN--GVVRKAWQLQEESSAIIVLDK---QGKVQFVKE 142 (160)
T ss_pred EE-cCC--CceeccccCCCCCceEEEEcC---CccEEEEEC
Confidence 65 444 56777787754 356889999 999987654
No 455
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=69.94 E-value=3.3 Score=24.68 Aligned_cols=19 Identities=26% Similarity=1.149 Sum_probs=8.9
Q ss_pred EEcCCCC-------CCccCccccccC
Q 013684 413 YQCLECG-------YEVHPKCVRAVD 431 (438)
Q Consensus 413 ~~c~~c~-------~~~~~~c~~~~~ 431 (438)
|.|.+|+ |.-|.+|.-+++
T Consensus 1 ~sCiDC~~~F~~~~y~~Ht~CItE~e 26 (28)
T PF08790_consen 1 FSCIDCSKDFDGDSYKSHTSCITEAE 26 (28)
T ss_dssp EEETTTTEEEEGGGTTT-----S---
T ss_pred CeeecCCCCcCcCCcCCCCcccCccc
Confidence 6799996 778999985543
No 456
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=68.98 E-value=17 Score=31.78 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=43.3
Q ss_pred CCE-EEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 71 GKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 71 gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
+++ +++.|..............|.+++++++++ +.++.+..+.. ..+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~------------------------~~~~~~~~ 146 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF------------------------PRLLKYFG 146 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT------------------------HHHHHHTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh------------------------HHHHHHcC
Confidence 444 777776555556666666777777776543 66666654422 45777888
Q ss_pred cC--ccceEEEecC
Q 013684 150 IE--GIPCLVVLQP 161 (438)
Q Consensus 150 v~--~~P~~~lvd~ 161 (438)
+. .+|.+++++.
T Consensus 147 i~~~~~P~~vi~~~ 160 (184)
T PF13848_consen 147 IDEDDLPALVIFDS 160 (184)
T ss_dssp TTTSSSSEEEEEET
T ss_pred CCCccCCEEEEEEC
Confidence 87 8999999996
No 457
>PRK12496 hypothetical protein; Provisional
Probab=68.26 E-value=3.4 Score=36.26 Aligned_cols=19 Identities=32% Similarity=0.805 Sum_probs=10.8
Q ss_pred ceeEEcCCCC--C------CccCcccc
Q 013684 410 GWAYQCLECG--Y------EVHPKCVR 428 (438)
Q Consensus 410 ~w~~~c~~c~--~------~~~~~c~~ 428 (438)
.|.|+|.-|+ | |.||.|.-
T Consensus 125 ~w~~~C~gC~~~~~~~~~~~~C~~CG~ 151 (164)
T PRK12496 125 KWRKVCKGCKKKYPEDYPDDVCEICGS 151 (164)
T ss_pred eeeEECCCCCccccCCCCCCcCCCCCC
Confidence 5666666664 4 34666653
No 458
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=67.03 E-value=2.6 Score=40.59 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhccCCCcccc-cccccccccccccCCCCCcccCccCC-CCCceeEEcCCC-CCCccCcccccc
Q 013684 359 KLEFLEKQMEEEAKNLPRSEFH-IGHRHELNLVSEGTGGGPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 430 (438)
Q Consensus 359 ~~~~L~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~C~~-~~~~w~~~c~~c-~~~~~~~c~~~~ 430 (438)
...+|...++.+....+..... +.--|-+.-+. .+.-+-.|.+|.- .-.+.+|+|-.| +|-|+|.|-.--
T Consensus 202 rKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~--nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG 274 (434)
T KOG4301|consen 202 RKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVE--NVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRG 274 (434)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhc--ccCCCccCcceecccccchhhhHhhcCCccccchhhccc
Confidence 3344555555555555543211 11111111111 3345678999984 458999999999 999999998744
No 459
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=65.98 E-value=14 Score=29.37 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=25.6
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCHHHHHHhHhc
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRAC 127 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~~~~~~~~~~ 127 (438)
..|+.++|+.|++....|.+ .|.+++.+-|.-+ .+.+++.+....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 46789999999997655443 4434555444322 234444444433
No 460
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=64.86 E-value=34 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=13.3
Q ss_pred EEecCCChhhhhhhHHHH
Q 013684 242 YFSARWCIPCEKFMPKLL 259 (438)
Q Consensus 242 ~F~a~wC~~C~~~~p~l~ 259 (438)
.|+..|||+|.+..-.|.
T Consensus 3 ly~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 3 LYSFRRCPYAMRARMALL 20 (71)
T ss_pred EEecCCCcHHHHHHHHHH
Confidence 466789999988755544
No 461
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=64.30 E-value=24 Score=29.47 Aligned_cols=64 Identities=16% Similarity=0.377 Sum_probs=42.5
Q ss_pred CEEEEEEecc--CCc-cch-hhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhh
Q 013684 72 KVTALYFSAN--WYP-PCG-NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK 147 (438)
Q Consensus 72 k~vll~F~a~--wC~-~C~-~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 147 (438)
+.-+|.|.-. .|. -+. .....|.++++++++++ +.+++++.+.. ..+.+.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~------------------------~~~~~~ 74 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQ------------------------LDLEEA 74 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCccc------------------------HHHHHH
Confidence 4656666422 232 232 34678888899987754 77777766533 447788
Q ss_pred cCcC--ccceEEEecC
Q 013684 148 FDIE--GIPCLVVLQP 161 (438)
Q Consensus 148 ~~v~--~~P~~~lvd~ 161 (438)
||+. .+|++++++.
T Consensus 75 fgl~~~~~P~v~i~~~ 90 (130)
T cd02983 75 LNIGGFGYPAMVAINF 90 (130)
T ss_pred cCCCccCCCEEEEEec
Confidence 9985 5999999997
No 462
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=62.72 E-value=10 Score=35.59 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHh
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELR 101 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 101 (438)
.||+.+++..+.|||.|..+.=.|-.+..+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 59999999999999999998877777777773
No 463
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.67 E-value=22 Score=37.21 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=27.6
Q ss_pred CEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHHhcCcCceeeEEEECCC
Q 013684 278 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPE 333 (438)
Q Consensus 278 ~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P~~~lid~~ 333 (438)
+..+|..|...+.+.+...... ++.+ -.+.+.++-...|.+.++|-.
T Consensus 129 ~~~vil~SATPsles~~~~~~g--~~~~-------~~l~~r~~~~~~p~v~vid~~ 175 (505)
T TIGR00595 129 NCPVVLGSATPSLESYHNAKQK--AYRL-------LVLTRRVSGRKPPEVKLIDMR 175 (505)
T ss_pred CCCEEEEeCCCCHHHHHHHhcC--CeEE-------eechhhhcCCCCCeEEEEecc
Confidence 5678888888777766655332 1111 123334444567888888643
No 464
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.01 E-value=18 Score=29.06 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=25.7
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCHHHHHHhHh
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRA 126 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~~~~~~~~~ 126 (438)
..|+.++|+.|++....|. +.|.+++++-+.-+ .+.+++..+++
T Consensus 2 ~iy~~~~C~~crka~~~L~-------~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE-------ARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCCHHHHHHHHH
Confidence 4688999999999765444 34434555544332 24444444444
No 465
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=61.95 E-value=17 Score=31.27 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.5
Q ss_pred CCccchhhHHHHHH
Q 013684 82 WYPPCGNFTGVLVD 95 (438)
Q Consensus 82 wC~~C~~~~p~l~~ 95 (438)
+||+|+.....|.+
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999887665543
No 466
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=61.73 E-value=33 Score=25.58 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=46.7
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG 152 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~ 152 (438)
+++..|-+..-+-.++....+.++.+++... ++++=.|++.+. ..+++.++|.+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~~------------------------P~lAe~~~ivA 55 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLKQ------------------------PQLAEEDKIVA 55 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEcccC------------------------HhHHhhCCEEE
Confidence 4566677777788999999999998887633 466665554433 67889999999
Q ss_pred cceEEEecC
Q 013684 153 IPCLVVLQP 161 (438)
Q Consensus 153 ~P~~~lvd~ 161 (438)
+||++=+.+
T Consensus 56 tPtLvk~~P 64 (72)
T cd02978 56 TPTLVKVLP 64 (72)
T ss_pred echhhhcCC
Confidence 999775554
No 467
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=35 Score=29.51 Aligned_cols=101 Identities=22% Similarity=0.317 Sum_probs=63.1
Q ss_pred eeecccc-CCCEEEEEEecC--CChh-hhhhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEecCCCHHHHHHHHhcCCC
Q 013684 228 KVPVSSL-VGKTVGLYFSAR--WCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW 302 (438)
Q Consensus 228 ~~~l~~~-~gk~vll~F~a~--wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~ 302 (438)
+++++++ +||.++| |..| ..|. |+...|-+.+-+++++.+ ++ +|+.|++| +.-..+.|.+.++-
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK---------GVd~iicvSVn-DpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK---------GVDEIICVSVN-DPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc---------CCcEEEEEecC-cHHHHHHHHhhcCc
Confidence 4666664 6776665 5544 5666 667999999999999876 33 47777887 55555555555441
Q ss_pred -cccccCCchhHHHHHhcCc-----------CceeeEEEECCCCcEEEcc
Q 013684 303 -LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 303 -~~~p~~~d~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~ 340 (438)
-.+.+..|...++.+.+|+ +.-....++ .||++...+
T Consensus 103 ~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 103 NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 1344555555666665554 233344556 788887754
No 468
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=58.88 E-value=8.3 Score=26.42 Aligned_cols=11 Identities=36% Similarity=1.138 Sum_probs=7.0
Q ss_pred CceeEEcCCCC
Q 013684 409 SGWAYQCLECG 419 (438)
Q Consensus 409 ~~w~~~c~~c~ 419 (438)
|.+.|+|.+|+
T Consensus 2 P~Yey~C~~Cg 12 (52)
T TIGR02605 2 PIYEYRCTACG 12 (52)
T ss_pred CCEEEEeCCCC
Confidence 45667777775
No 469
>PHA03075 glutaredoxin-like protein; Provisional
Probab=58.84 E-value=9.8 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=25.2
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIK 266 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 266 (438)
|.+++.|.-|.|+.|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999998888877766654
No 470
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=58.73 E-value=96 Score=25.39 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=54.0
Q ss_pred ccccCCCEEEEEEecc--CCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHH
Q 013684 66 VSDLEGKVTALYFSAN--WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA 143 (438)
Q Consensus 66 l~~~~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 143 (438)
|+++++|.-+|..+|+ .-+.-......|.+....+.++. +.++.+.-+...... -+. +......
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~~~-----------~~~-~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARSPG-----------KPL-SPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccccc-----------CcC-CHHHHHH
Confidence 5566665544444544 33455666677777667777764 777766333221100 111 3333478
Q ss_pred HhhhcCcC-ccceEEEecCCCCCCCccccc
Q 013684 144 LNRKFDIE-GIPCLVVLQPYDDKDDATLHD 172 (438)
Q Consensus 144 l~~~~~v~-~~P~~~lvd~~~~~G~v~~~~ 172 (438)
+.+.|++. ..-+++||++ ||.+..+.
T Consensus 69 lr~~l~~~~~~f~~vLiGK---DG~vK~r~ 95 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGK---DGGVKLRW 95 (118)
T ss_pred HHHHhCCCCCceEEEEEeC---CCcEEEec
Confidence 89999875 3467899999 99887663
No 471
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.56 E-value=39 Score=25.17 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=46.0
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHHH
Q 013684 238 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 317 (438)
Q Consensus 238 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 317 (438)
++|..|-+...+-..+....+.++.+++.+. .+++=-|.+..+ .++++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~---------~~~LeVIDv~~~-----------------------P~lAe 49 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG---------PYELEVIDVLKQ-----------------------PQLAE 49 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC---------cEEEEEEEcccC-----------------------HhHHh
Confidence 4667777878888888899999998887632 455555555444 67889
Q ss_pred hcCcCceeeEEEECC
Q 013684 318 YFDVQGIPCLVIIGP 332 (438)
Q Consensus 318 ~~~v~~~P~~~lid~ 332 (438)
.++|-++||++=..|
T Consensus 50 ~~~ivAtPtLvk~~P 64 (72)
T cd02978 50 EDKIVATPTLVKVLP 64 (72)
T ss_pred hCCEEEechhhhcCC
Confidence 999999999765543
No 472
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=58.52 E-value=15 Score=32.58 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEecCCChhhhhhhHHHHHHHHHHHhh
Q 013684 242 YFSARWCIPCEKFMPKLLSIYQKIKQN 268 (438)
Q Consensus 242 ~F~a~wC~~C~~~~p~l~~l~~~~~~~ 268 (438)
+|..|.|++|-...|.+.++..+++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588999999999999999999999865
No 473
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=33 Score=25.70 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=41.1
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccce
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC 155 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~ 155 (438)
+.|++.-||.|......|.++ + +..=+|.+-.+...+++|+.-..-. ..| +-.+..|--++|.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~--v~yd~VeIt~Sm~NlKrFl~lRDs~-~~F-------d~vk~~gyiGIPa 67 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------N--VDYDFVEITESMANLKRFLHLRDSR-PEF-------DEVKSNGYIGIPA 67 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------C--CCceeeehhhhhhhHHHHHhhhccc-hhH-------HhhhhcCcccceE
Confidence 678999999998876665542 2 3333455566677778877643210 001 1234577788998
Q ss_pred EEEe
Q 013684 156 LVVL 159 (438)
Q Consensus 156 ~~lv 159 (438)
+++=
T Consensus 68 ll~~ 71 (85)
T COG4545 68 LLTD 71 (85)
T ss_pred EEeC
Confidence 7653
No 474
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=56.80 E-value=7.9 Score=27.45 Aligned_cols=26 Identities=31% Similarity=0.842 Sum_probs=19.8
Q ss_pred cccCccCCCCCceeEE--------cCCCCCCccC
Q 013684 399 FICCDCDEQGSGWAYQ--------CLECGYEVHP 424 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~--------c~~c~~~~~~ 424 (438)
-.|+.|+.+-..=.|. |.+|+|.-.+
T Consensus 10 A~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~~~~ 43 (59)
T TIGR02443 10 AVCPACSAQDTLAMWKENNIELVECVECGYQEQQ 43 (59)
T ss_pred ccCCCCcCccEEEEEEeCCceEEEeccCCCcccc
Confidence 3799999887665544 9999997654
No 475
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=56.78 E-value=25 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.7
Q ss_pred HHHhhhcCcCccceEEEecCCCCCCCccc
Q 013684 142 KALNRKFDIEGIPCLVVLQPYDDKDDATL 170 (438)
Q Consensus 142 ~~l~~~~~v~~~P~~~lvd~~~~~G~v~~ 170 (438)
..|..+|++...|+++++. +|+.+.
T Consensus 72 ~~L~~r~gv~~~PaLvf~R----~g~~lG 96 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFFR----DGRYLG 96 (107)
T ss_dssp HHHHHHHT-TSSSEEEEEE----TTEEEE
T ss_pred HHHHHHhCCccCCeEEEEE----CCEEEE
Confidence 7999999999999999998 666553
No 476
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=56.68 E-value=1.5e+02 Score=30.37 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHH------------
Q 013684 224 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT------------ 291 (438)
Q Consensus 224 ~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~------------ 291 (438)
+++ .+++++++|..-+|.-.++- .++...+...+...+++.+. ++-||-|..+.+.+
T Consensus 285 ~~~-~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r---------~VlvVPv~~~~~~~~~~~~~gfg~~s 353 (453)
T PLN03098 285 TNR-IVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKR---------GVLLIPVVWGENKDPQPKKKGFGRSS 353 (453)
T ss_pred CCC-EEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHc---------CcEEEEEecCCCCccccccccccccc
Confidence 577 89999999965544444443 44555555555556666655 78888888763211
Q ss_pred --------------------HHHHHH-hcCCCcccccCCchhHHHH----HhcCcC-ceeeEEEECCCCcEEEcc
Q 013684 292 --------------------SFESYF-GTMPWLALPFGDPTIKELT----KYFDVQ-GIPCLVIIGPEGKTVTKQ 340 (438)
Q Consensus 292 --------------------~~~~~~-~~~~~~~~p~~~d~~~~l~----~~~~v~-~~P~~~lid~~G~i~~~~ 340 (438)
..+..+ .+..|...|+..+.-..-. +.-||. +-|.++.+..||+|+..+
T Consensus 354 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG 428 (453)
T PLN03098 354 KAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSG 428 (453)
T ss_pred hhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCC
Confidence 111111 2455888888765322211 122332 337788899999999873
No 477
>PHA03075 glutaredoxin-like protein; Provisional
Probab=56.61 E-value=13 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.8
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHH
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEEL 100 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~ 100 (438)
|.++|.|.-|-|+.|......|.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 67899999999999999888887776664
No 478
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=56.19 E-value=7.9 Score=28.76 Aligned_cols=27 Identities=26% Similarity=0.774 Sum_probs=19.9
Q ss_pred cccCccCCCCCceeEE--------cCCCCCCccCc
Q 013684 399 FICCDCDEQGSGWAYQ--------CLECGYEVHPK 425 (438)
Q Consensus 399 ~~c~~C~~~~~~w~~~--------c~~c~~~~~~~ 425 (438)
-.|+.|+.+-..=.|. |.+|||--...
T Consensus 9 a~CP~C~~~D~i~~~~e~~ve~vECV~CGy~e~~~ 43 (71)
T PF09526_consen 9 AVCPKCQAMDTIMMWRENGVEYVECVECGYTERQP 43 (71)
T ss_pred ccCCCCcCccEEEEEEeCCceEEEecCCCCeeccC
Confidence 3799999888655443 99999865543
No 479
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=56.01 E-value=6.4 Score=26.27 Aligned_cols=24 Identities=33% Similarity=0.977 Sum_probs=16.5
Q ss_pred cccCccCCCCCce---eEEcCCCCCCc
Q 013684 399 FICCDCDEQGSGW---AYQCLECGYEV 422 (438)
Q Consensus 399 ~~c~~C~~~~~~w---~~~c~~c~~~~ 422 (438)
|.|..|+..-... .-+|.+|++.+
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCCceE
Confidence 7888888654333 45688888765
No 480
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.57 E-value=6.2 Score=29.37 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=11.1
Q ss_pred CCCceeEEcCCCC
Q 013684 407 QGSGWAYQCLECG 419 (438)
Q Consensus 407 ~~~~w~~~c~~c~ 419 (438)
+-|++.|.|.+|+
T Consensus 7 lMPtY~Y~c~~cg 19 (82)
T COG2331 7 LMPTYSYECTECG 19 (82)
T ss_pred cccceEEeecccc
Confidence 4578999999997
No 481
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=55.25 E-value=20 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC
Q 013684 76 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE 116 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~ 116 (438)
..|+.++|+.|++....|.+ .| +++..+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~ 33 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGE 33 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCC
Confidence 35789999999997765554 34 5555666544
No 482
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=54.37 E-value=49 Score=28.40 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=10.7
Q ss_pred CChhhhhhhHHHHH
Q 013684 247 WCIPCEKFMPKLLS 260 (438)
Q Consensus 247 wC~~C~~~~p~l~~ 260 (438)
+||+|......|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999887666553
No 483
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=26 Score=32.44 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCCCCceeeccccCCCEEEEEEecCCChhhhhhhHHHHHHHHHHH
Q 013684 222 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 266 (438)
Q Consensus 222 ~~~g~~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 266 (438)
..++. .+-..+..++++++.|+-..||+|+...|.+.+.+-...
T Consensus 71 ~~~~~-~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGK-DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCC-cccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 55555 555555666899999999999999888888887554433
No 484
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=53.76 E-value=22 Score=29.79 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecC-CCHHHHHHhHhcC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRACM 128 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D-~~~~~~~~~~~~~ 128 (438)
+..|..++|+.|++....|. +.|..++.+-|.-+ .+.+++.++++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 45678999999999665443 34433444433222 2445555555543
No 485
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=29 Score=32.19 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCCCCEEeccccCCCEEEEEEeccCCccchhhHHHHHHHHHHHhc
Q 013684 58 KEIGEEVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN 102 (438)
Q Consensus 58 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 102 (438)
..++..+..-...+++.++.|.-.-||+|++..|.+.+.+.....
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 444444444455568999999999999998888888885555433
No 486
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=53.64 E-value=7.3 Score=21.84 Aligned_cols=9 Identities=44% Similarity=1.434 Sum_probs=5.9
Q ss_pred EEcCCCCCC
Q 013684 413 YQCLECGYE 421 (438)
Q Consensus 413 ~~c~~c~~~ 421 (438)
|+|..|+|-
T Consensus 1 y~C~~C~y~ 9 (24)
T PF13909_consen 1 YKCPHCSYS 9 (24)
T ss_dssp EE-SSSS-E
T ss_pred CCCCCCCCc
Confidence 789999984
No 487
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.41 E-value=36 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=29.0
Q ss_pred EEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEec
Q 013684 73 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 114 (438)
Q Consensus 73 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~ 114 (438)
..+-.|+-.=||.|=.-.+-|.++..++... .+++|.+=+.
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~-~~v~i~w~pf 46 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQE-VRVEIRWRPF 46 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCcc-eeEEEEeccc
Confidence 3444455678999999999999998888654 2466665554
No 488
>PRK09301 circadian clock protein KaiB; Provisional
Probab=53.25 E-value=49 Score=26.47 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=49.8
Q ss_pred CCCEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcC
Q 013684 70 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD 149 (438)
Q Consensus 70 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 149 (438)
++.+++=.|.+..-+..++.+..+.++.++.-... +++=.|++-.. ..+++.++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~--y~LeVIDv~~q------------------------PelAE~~~ 57 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGV--YALKVIDVLKN------------------------PQLAEEDK 57 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEEEcccC------------------------HhHHhHCC
Confidence 45677878888888999999999999888765532 55555544333 68899999
Q ss_pred cCccceEEEecC
Q 013684 150 IEGIPCLVVLQP 161 (438)
Q Consensus 150 v~~~P~~~lvd~ 161 (438)
|.++||++=+.+
T Consensus 58 IvATPTLIK~~P 69 (103)
T PRK09301 58 ILATPTLAKILP 69 (103)
T ss_pred eEEecHHhhcCC
Confidence 999999876655
No 489
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=52.98 E-value=5.5 Score=38.18 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=51.9
Q ss_pred CEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHHH
Q 013684 237 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 316 (438)
Q Consensus 237 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 316 (438)
-+|-+.||++|||.-+...|.+.-...-|.. +...+ +++ +.. ...+.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-----------i~h~~--vee-------~~~-------------lpsv~ 123 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-----------IQHFA--VEE-------SQA-------------LPSVF 123 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-----------ccccc--HHH-------Hhh-------------cccch
Confidence 4688899999999988888888766665542 12222 221 111 14577
Q ss_pred HhcCcCceeeEEEECCCCcEEEcccch
Q 013684 317 KYFDVQGIPCLVIIGPEGKTVTKQGRN 343 (438)
Q Consensus 317 ~~~~v~~~P~~~lid~~G~i~~~~~~~ 343 (438)
..||+.+.|+..+++..-..+++..++
T Consensus 124 s~~~~~~~ps~~~~n~t~~~~~~~~r~ 150 (319)
T KOG2640|consen 124 SSYGIHSEPSNLMLNQTCPASYRGERD 150 (319)
T ss_pred hccccccCCcceeeccccchhhccccc
Confidence 889999999999998888888875433
No 490
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=52.14 E-value=8.6 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=15.1
Q ss_pred cCccCCCCCceeEEcCCCCCCc
Q 013684 401 CCDCDEQGSGWAYQCLECGYEV 422 (438)
Q Consensus 401 c~~C~~~~~~w~~~c~~c~~~~ 422 (438)
|++|+.+-+.=.--|..|+.+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 6777776665555688887664
No 491
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=52.07 E-value=18 Score=29.23 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=15.2
Q ss_pred EEEeccCCccchhhHHHHHH
Q 013684 76 LYFSANWYPPCGNFTGVLVD 95 (438)
Q Consensus 76 l~F~a~wC~~C~~~~p~l~~ 95 (438)
..|+.++|+.|++....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778999999997765543
No 492
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=51.83 E-value=4 Score=30.10 Aligned_cols=25 Identities=28% Similarity=0.914 Sum_probs=13.3
Q ss_pred ccCccCCCCCce---eEEcCCC--CCCccCc
Q 013684 400 ICCDCDEQGSGW---AYQCLEC--GYEVHPK 425 (438)
Q Consensus 400 ~c~~C~~~~~~w---~~~c~~c--~~~~~~~ 425 (438)
.|+.|+.. -.| .|+|..| +|.+++.
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~~~~~a~ 32 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKDYKKEAF 32 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--EEEEEEE
T ss_pred cCCCCCCc-cEEeCCEEECccccccceeccc
Confidence 46777655 455 4677777 3554433
No 493
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.99 E-value=29 Score=28.20 Aligned_cols=45 Identities=4% Similarity=-0.010 Sum_probs=26.6
Q ss_pred EEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCC---CHHHHHHhHhcC
Q 013684 75 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFNNYRACM 128 (438)
Q Consensus 75 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~---~~~~~~~~~~~~ 128 (438)
+..|+.++|+.|++....|.+ .| +.+..+++.. +.+++.++++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~g--i~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQ--IPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC--CceEEEecCCCcchHHHHHHHHHHh
Confidence 346778999999997655443 44 4444555533 345555555533
No 494
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=50.93 E-value=60 Score=26.96 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCccceEEEecCCCCCCCc
Q 013684 89 FTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 168 (438)
Q Consensus 89 ~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~~~~~G~v 168 (438)
++-.++...+.++++| ++|.-.+...++..|.+.. . -..+.+.-|...+|.++| ||++
T Consensus 25 eL~~~a~~~~~Lk~~g--v~v~RyNL~~~P~aF~~n~-------------~-V~~~L~~~G~e~LPitlV------dGei 82 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQG--VEVERYNLAQNPQAFVENP-------------E-VNQLLQTEGAEALPITLV------DGEI 82 (123)
T ss_dssp HHHHHHHHHHHHHHTT---EEEEEETTT-TTHHHHSH-------------H-HHHHHHHH-GGG-SEEEE------TTEE
T ss_pred HHHHHHHHHHHHHhCC--ceEEEEccccCHHHHHhCH-------------H-HHHHHHHcCcccCCEEEE------CCEE
Confidence 4556677788888887 8888888876665433322 1 156667779999999887 8888
Q ss_pred ccccc
Q 013684 169 TLHDG 173 (438)
Q Consensus 169 ~~~~~ 173 (438)
+..+.
T Consensus 83 v~~G~ 87 (123)
T PF06953_consen 83 VKTGR 87 (123)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 86643
No 495
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=50.85 E-value=53 Score=26.57 Aligned_cols=49 Identities=8% Similarity=0.204 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcCc----cceEEEecC
Q 013684 87 GNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQP 161 (438)
Q Consensus 87 ~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lvd~ 161 (438)
......+.+++++++. | .+.++. +|.+.. ..+.+.||+.. .|.+.+++.
T Consensus 34 ~~~~~~~~~vAk~fk~-g-ki~Fv~--~D~~~~----------------------~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 34 NYWRNRVLKVAKDFPD-R-KLNFAV--ADKEDF----------------------SHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHCcC-C-eEEEEE--EcHHHH----------------------HHHHHHcCCCcccCCCCEEEEEeC
Confidence 3456777888888862 1 144444 442221 34677889874 899999986
No 496
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=50.83 E-value=42 Score=30.30 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCEEEEEEecCCChhhhhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEecCCCHHHHHHHHhcCCCcccccCCchhHHH
Q 013684 236 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 315 (438)
Q Consensus 236 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 315 (438)
|-+|+|..|...-|-|.-....|++++-+|.+ +++|-|-...-.
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-----------iKFVki~at~cI------------------------- 154 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-----------IKFVKIPATTCI------------------------- 154 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-----------ceEEeccccccc-------------------------
Confidence 77999999999999999999999999999874 567766543211
Q ss_pred HHhcCcCceeeEEEECCCCcEEEc
Q 013684 316 TKYFDVQGIPCLVIIGPEGKTVTK 339 (438)
Q Consensus 316 ~~~~~v~~~P~~~lid~~G~i~~~ 339 (438)
..|-=...||++++ -.|-+...
T Consensus 155 -pNYPe~nlPTl~VY-~~G~lk~q 176 (240)
T KOG3170|consen 155 -PNYPESNLPTLLVY-HHGALKKQ 176 (240)
T ss_pred -CCCcccCCCeEEEe-ecchHHhh
Confidence 11223458999999 67766654
No 497
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=50.69 E-value=61 Score=25.11 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=47.5
Q ss_pred CEEEEEEeccCCccchhhHHHHHHHHHHHhcCCCCEEEEEEecCCCHHHHHHhHhcCCcccccCCChHHHHHHhhhcCcC
Q 013684 72 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 151 (438)
Q Consensus 72 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~ 151 (438)
++++=.|.|..-+.+++....+.++.++.-... +++=.|++... ..+++.+++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~--y~LeVIDv~~q------------------------P~lAE~~~Iv 56 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGV--YALKVIDVLKN------------------------PQLAEEDKIL 56 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEEEcccC------------------------HhHHhHCCEE
Confidence 466667778888899999999999888765432 55555544333 7889999999
Q ss_pred ccceEEEecC
Q 013684 152 GIPCLVVLQP 161 (438)
Q Consensus 152 ~~P~~~lvd~ 161 (438)
++||++=+.+
T Consensus 57 ATPtLIK~~P 66 (87)
T TIGR02654 57 ATPTLSKILP 66 (87)
T ss_pred EecHHhhcCC
Confidence 9999876655
No 498
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=50.10 E-value=31 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.3
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 013684 241 LYFSARWCIPCEKFMPKLLS 260 (438)
Q Consensus 241 l~F~a~wC~~C~~~~p~l~~ 260 (438)
..|+.++|+.|+.....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778999999988765554
No 499
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=49.64 E-value=33 Score=27.91 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEec-CCCHHHHHHhHh----cCCcc-cccCCChHHHHHHhhhcCcCccceEEEecC
Q 013684 91 GVLVDVYEELRNNGSDFEVVFVSS-DEDLNAFNNYRA----CMPWL-AVPYSDLETKKALNRKFDIEGIPCLVVLQP 161 (438)
Q Consensus 91 p~l~~l~~~~~~~~~~~~iv~vs~-D~~~~~~~~~~~----~~~~~-~~~~~d~~~~~~l~~~~~v~~~P~~~lvd~ 161 (438)
..|.++.++....| ..+++=-+ +.+..+..++++ +.+-. .+. ....+.++|+|+.+|++++...
T Consensus 11 ~~L~~l~~~a~~~~--~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~-----IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERAG--VVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQ-----IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhCC--cEEEEECCCCCCHHHHHHHHHHHhhccCCCccee-----EChhHHhhCCceEcCEEEEEcC
Confidence 45777777776665 44444333 223333333332 22211 111 1278899999999999999873
No 500
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=49.60 E-value=1.7 Score=44.68 Aligned_cols=37 Identities=27% Similarity=0.674 Sum_probs=29.2
Q ss_pred CCcccCccCCCCCceeE---EcCCCCCCccCccccccCCC
Q 013684 397 GPFICCDCDEQGSGWAY---QCLECGYEVHPKCVRAVDRG 433 (438)
Q Consensus 397 ~~~~c~~C~~~~~~w~~---~c~~c~~~~~~~c~~~~~~~ 433 (438)
.+-.|-+|+++=.+..- +|.+|.|.-|.+||.+..++
T Consensus 277 rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~d 316 (888)
T KOG4236|consen 277 RPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPND 316 (888)
T ss_pred CchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcccc
Confidence 46799999976555543 59999999999999876543
Done!