BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013685
         (438 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DYS|A Chain A, Endoglucanase Cel6b From Humicola Insolens
 pdb|1DYS|B Chain B, Endoglucanase Cel6b From Humicola Insolens
          Length = 348

 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 371 AAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYS 410
           A E A  +   GNN K    S ++ SNYNP +   P PY+
Sbjct: 197 AQEVATILQKAGNNAKIRGFSSNV-SNYNPYSTSNPPPYT 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.120    0.305 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,986,847
Number of Sequences: 62578
Number of extensions: 291009
Number of successful extensions: 721
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 71
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (25.0 bits)