Query 013685
Match_columns 438
No_of_seqs 153 out of 171
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 99.5 2.7E-09 5.9E-14 121.9 45.7 327 13-364 676-1015(1164)
2 TIGR02169 SMC_prok_A chromosom 99.4 2.6E-09 5.6E-14 122.1 43.0 139 14-174 166-322 (1164)
3 COG1196 Smc Chromosome segrega 99.4 5.5E-09 1.2E-13 121.6 43.7 308 13-360 174-499 (1163)
4 COG1196 Smc Chromosome segrega 99.3 6E-08 1.3E-12 113.0 45.1 194 179-387 832-1037(1163)
5 PRK02224 chromosome segregatio 99.3 6.1E-08 1.3E-12 109.3 43.6 105 225-332 573-678 (880)
6 TIGR02168 SMC_prok_B chromosom 99.3 5E-08 1.1E-12 111.2 42.5 45 13-57 167-211 (1179)
7 PRK02224 chromosome segregatio 99.2 4.9E-07 1.1E-11 102.0 43.4 44 337-380 525-568 (880)
8 TIGR02168 SMC_prok_B chromosom 99.2 1.9E-07 4E-12 106.6 39.9 47 320-366 974-1024(1179)
9 KOG0161 Myosin class II heavy 98.9 9.9E-06 2.1E-10 97.4 40.4 318 15-378 1045-1372(1930)
10 PF05701 WEMBL: Weak chloropla 98.9 4.6E-05 1E-09 82.4 41.0 96 12-107 49-149 (522)
11 KOG0161 Myosin class II heavy 98.8 4.8E-05 1E-09 91.7 41.6 323 12-367 888-1221(1930)
12 PRK03918 chromosome segregatio 98.8 0.00012 2.7E-09 82.6 42.8 45 71-115 388-432 (880)
13 PF10174 Cast: RIM-binding pro 98.8 0.00027 5.9E-09 79.5 43.6 298 13-324 123-453 (775)
14 PF10174 Cast: RIM-binding pro 98.8 8.4E-05 1.8E-09 83.5 38.3 331 7-379 332-694 (775)
15 PF05701 WEMBL: Weak chloropla 98.7 0.00018 3.8E-09 77.9 38.4 47 195-241 273-319 (522)
16 TIGR00606 rad50 rad50. This fa 98.7 7.9E-05 1.7E-09 88.3 38.4 43 198-240 883-925 (1311)
17 TIGR00606 rad50 rad50. This fa 98.7 0.00021 4.6E-09 84.8 41.2 42 251-292 1002-1045(1311)
18 PF00261 Tropomyosin: Tropomyo 98.7 1.1E-05 2.4E-10 78.6 25.4 19 152-170 98-116 (237)
19 PHA02562 46 endonuclease subun 98.6 0.0001 2.2E-09 79.0 32.8 173 56-241 223-396 (562)
20 PF00038 Filament: Intermediat 98.6 0.00011 2.5E-09 73.4 30.2 190 30-241 52-247 (312)
21 PF00261 Tropomyosin: Tropomyo 98.6 7E-05 1.5E-09 73.0 26.9 35 140-174 114-148 (237)
22 PRK01156 chromosome segregatio 98.5 0.004 8.6E-08 71.1 42.7 30 141-170 471-500 (895)
23 COG1340 Uncharacterized archae 98.5 0.00096 2.1E-08 67.2 32.4 93 193-294 155-247 (294)
24 PF07888 CALCOCO1: Calcium bin 98.5 0.00072 1.6E-08 73.2 32.8 111 186-301 347-457 (546)
25 PRK01156 chromosome segregatio 98.4 0.0036 7.8E-08 71.4 40.2 19 140-158 484-502 (895)
26 PF15070 GOLGA2L5: Putative go 98.4 0.0011 2.4E-08 73.1 34.7 274 45-364 3-315 (617)
27 KOG0977 Nuclear envelope prote 98.4 0.00022 4.7E-09 77.1 27.0 253 14-295 102-383 (546)
28 PRK04863 mukB cell division pr 98.4 0.0046 9.9E-08 74.3 40.4 102 12-114 294-395 (1486)
29 KOG0977 Nuclear envelope prote 98.4 0.00032 6.9E-09 75.9 27.9 266 18-292 42-334 (546)
30 KOG4674 Uncharacterized conser 98.4 0.0031 6.8E-08 75.8 37.7 265 50-356 827-1095(1822)
31 KOG0933 Structural maintenance 98.3 0.0038 8.2E-08 71.1 35.7 181 138-327 786-1007(1174)
32 KOG0996 Structural maintenance 98.3 0.0071 1.5E-07 69.9 37.4 91 193-292 469-559 (1293)
33 PHA02562 46 endonuclease subun 98.3 0.00041 9E-09 74.4 26.8 43 251-293 355-397 (562)
34 KOG0996 Structural maintenance 98.3 0.0011 2.4E-08 76.2 30.8 219 37-291 389-607 (1293)
35 PF00038 Filament: Intermediat 98.2 0.0074 1.6E-07 60.4 32.8 97 19-115 5-109 (312)
36 PRK11637 AmiB activator; Provi 98.2 0.00068 1.5E-08 71.3 25.9 77 36-112 44-120 (428)
37 KOG0250 DNA repair protein RAD 98.2 0.0026 5.7E-08 72.9 31.7 32 258-289 433-464 (1074)
38 KOG0971 Microtubule-associated 98.2 0.016 3.4E-07 65.6 36.6 165 33-213 277-441 (1243)
39 PF07888 CALCOCO1: Calcium bin 98.2 0.021 4.5E-07 62.2 40.9 95 17-111 142-236 (546)
40 KOG4674 Uncharacterized conser 98.1 0.052 1.1E-06 65.8 40.4 229 12-241 1005-1288(1822)
41 PRK11637 AmiB activator; Provi 98.1 0.0037 8.1E-08 65.8 28.0 91 24-114 46-136 (428)
42 KOG0933 Structural maintenance 98.1 0.023 4.9E-07 65.0 34.9 138 15-174 180-329 (1174)
43 PF01576 Myosin_tail_1: Myosin 98.1 8.2E-07 1.8E-11 100.8 0.0 305 20-378 6-314 (859)
44 COG1340 Uncharacterized archae 98.0 0.025 5.3E-07 57.3 34.4 86 201-295 156-241 (294)
45 PF12128 DUF3584: Protein of u 97.9 0.05 1.1E-06 64.6 36.7 94 276-381 443-536 (1201)
46 KOG0250 DNA repair protein RAD 97.9 0.0099 2.1E-07 68.4 28.9 15 366-380 508-522 (1074)
47 PF05667 DUF812: Protein of un 97.9 0.043 9.4E-07 60.6 32.3 264 58-346 326-589 (594)
48 PRK04778 septation ring format 97.9 0.073 1.6E-06 58.4 35.3 95 9-105 189-299 (569)
49 KOG0964 Structural maintenance 97.8 0.012 2.6E-07 67.1 27.1 57 180-236 395-451 (1200)
50 PF12128 DUF3584: Protein of u 97.8 0.15 3.3E-06 60.6 41.7 289 58-376 357-712 (1201)
51 KOG0971 Microtubule-associated 97.8 0.055 1.2E-06 61.5 30.7 265 12-295 277-552 (1243)
52 PRK04778 septation ring format 97.7 0.12 2.6E-06 56.7 36.6 102 138-241 190-299 (569)
53 KOG0995 Centromere-associated 97.7 0.12 2.7E-06 56.2 37.1 88 7-94 234-321 (581)
54 KOG0976 Rho/Rac1-interacting s 97.7 0.17 3.7E-06 57.1 32.2 72 15-86 89-160 (1265)
55 COG1579 Zn-ribbon protein, pos 97.7 0.01 2.3E-07 58.4 21.0 158 34-241 12-173 (239)
56 COG1579 Zn-ribbon protein, pos 97.6 0.0097 2.1E-07 58.6 20.3 71 20-90 12-82 (239)
57 COG4942 Membrane-bound metallo 97.6 0.084 1.8E-06 55.9 27.5 37 256-292 205-241 (420)
58 PF15619 Lebercilin: Ciliary p 97.5 0.082 1.8E-06 50.6 24.7 136 58-226 59-194 (194)
59 PF01576 Myosin_tail_1: Myosin 97.5 2.2E-05 4.7E-10 89.4 0.0 98 18-115 152-249 (859)
60 PRK04863 mukB cell division pr 97.5 0.47 1E-05 57.7 40.3 40 338-377 575-614 (1486)
61 PF09726 Macoilin: Transmembra 97.5 0.023 4.9E-07 63.9 23.2 100 193-292 542-653 (697)
62 PF15070 GOLGA2L5: Putative go 97.5 0.29 6.3E-06 54.4 31.8 115 179-293 171-311 (617)
63 PF05483 SCP-1: Synaptonemal c 97.4 0.37 8.1E-06 53.6 40.5 316 25-367 190-559 (786)
64 PF05557 MAD: Mitotic checkpoi 97.4 5.8E-05 1.3E-09 84.3 1.2 26 251-276 403-428 (722)
65 PF13514 AAA_27: AAA domain 97.3 0.58 1.3E-05 55.2 40.1 48 336-383 948-996 (1111)
66 PF05010 TACC: Transforming ac 97.3 0.18 4E-06 48.8 26.3 197 15-237 6-202 (207)
67 KOG0964 Structural maintenance 97.3 0.59 1.3E-05 53.9 36.5 102 140-241 259-366 (1200)
68 PF09726 Macoilin: Transmembra 97.2 0.053 1.1E-06 61.0 22.5 183 150-363 457-650 (697)
69 KOG0612 Rho-associated, coiled 97.2 0.73 1.6E-05 54.2 36.0 83 13-95 450-536 (1317)
70 KOG0994 Extracellular matrix g 97.2 0.72 1.6E-05 54.1 34.9 64 12-75 1416-1479(1758)
71 PRK09039 hypothetical protein; 97.2 0.05 1.1E-06 56.2 20.6 123 24-169 45-167 (343)
72 PF12718 Tropomyosin_1: Tropom 97.1 0.029 6.3E-07 51.2 16.0 56 318-373 77-132 (143)
73 KOG0018 Structural maintenance 97.1 0.92 2E-05 52.8 30.3 57 56-112 700-756 (1141)
74 KOG4643 Uncharacterized coiled 97.1 0.92 2E-05 52.5 37.6 154 200-358 412-601 (1195)
75 KOG0018 Structural maintenance 97.1 0.97 2.1E-05 52.6 30.4 69 251-330 406-474 (1141)
76 COG3883 Uncharacterized protei 97.1 0.34 7.4E-06 48.6 23.8 68 48-115 33-100 (265)
77 COG4942 Membrane-bound metallo 97.1 0.52 1.1E-05 50.1 26.3 69 19-87 39-107 (420)
78 KOG1029 Endocytic adaptor prot 97.0 0.98 2.1E-05 51.1 31.5 142 140-296 431-577 (1118)
79 PF09730 BicD: Microtubule-ass 96.9 1.2 2.6E-05 50.5 43.6 110 6-115 29-148 (717)
80 KOG0994 Extracellular matrix g 96.8 1.8 3.9E-05 51.0 32.4 64 12-75 1409-1472(1758)
81 PF05557 MAD: Mitotic checkpoi 96.7 0.0091 2E-07 67.0 10.8 247 13-293 283-535 (722)
82 PF06160 EzrA: Septation ring 96.7 1.4 3E-05 48.5 41.0 337 11-380 94-482 (560)
83 PF12718 Tropomyosin_1: Tropom 96.7 0.23 5E-06 45.3 17.8 97 56-172 10-106 (143)
84 PF05622 HOOK: HOOK protein; 96.7 0.00043 9.4E-09 77.4 0.0 96 140-240 292-393 (713)
85 PF10473 CENP-F_leu_zip: Leuci 96.7 0.28 6E-06 44.8 18.0 94 22-115 7-100 (140)
86 PF05622 HOOK: HOOK protein; 96.6 0.00046 1E-08 77.2 0.0 100 10-109 290-412 (713)
87 COG0419 SbcC ATPase involved i 96.6 2.1 4.4E-05 49.7 43.8 53 61-113 390-442 (908)
88 PF10473 CENP-F_leu_zip: Leuci 96.6 0.14 3E-06 46.8 15.8 87 140-241 4-90 (140)
89 PF08317 Spc7: Spc7 kinetochor 96.6 0.22 4.7E-06 51.0 18.8 105 11-115 156-264 (325)
90 TIGR02680 conserved hypothetic 96.6 2.9 6.3E-05 50.7 32.2 23 139-161 844-866 (1353)
91 KOG1003 Actin filament-coating 96.4 0.95 2.1E-05 43.6 22.3 197 31-295 3-199 (205)
92 TIGR03185 DNA_S_dndD DNA sulfu 96.4 2.3 4.9E-05 47.5 32.3 49 193-241 388-438 (650)
93 smart00787 Spc7 Spc7 kinetocho 96.4 0.19 4.2E-06 51.4 16.9 107 10-116 150-260 (312)
94 PF05667 DUF812: Protein of un 96.4 2.3 5E-05 47.3 31.4 143 139-292 440-588 (594)
95 PRK11281 hypothetical protein; 96.3 3.9 8.3E-05 48.7 31.0 136 136-288 189-333 (1113)
96 KOG0963 Transcription factor/C 96.2 2.7 5.8E-05 46.6 28.0 130 58-220 194-341 (629)
97 KOG4643 Uncharacterized coiled 96.2 3.6 7.7E-05 48.0 36.0 161 13-188 179-349 (1195)
98 PRK09039 hypothetical protein; 96.2 0.9 2E-05 47.0 21.0 21 188-208 164-184 (343)
99 KOG0976 Rho/Rac1-interacting s 96.1 3.4 7.5E-05 47.1 38.7 114 38-174 98-211 (1265)
100 PF05911 DUF869: Plant protein 96.1 3.6 7.8E-05 47.1 26.2 92 197-297 625-716 (769)
101 PF10498 IFT57: Intra-flagella 96.0 0.49 1.1E-05 49.4 17.8 130 18-164 220-353 (359)
102 PF05010 TACC: Transforming ac 95.9 1.8 3.8E-05 42.1 23.8 193 29-240 6-198 (207)
103 COG3883 Uncharacterized protei 95.9 2.1 4.6E-05 43.0 23.8 76 34-109 33-108 (265)
104 KOG0999 Microtubule-associated 95.9 3.5 7.5E-05 45.3 28.8 80 194-273 140-220 (772)
105 KOG0995 Centromere-associated 95.9 3.6 7.8E-05 45.3 38.1 48 250-297 421-468 (581)
106 PF14662 CCDC155: Coiled-coil 95.9 1.8 3.9E-05 41.6 22.6 127 78-227 57-189 (193)
107 PF05483 SCP-1: Synaptonemal c 95.9 4.1 8.9E-05 45.7 34.2 157 58-241 469-625 (786)
108 PF06160 EzrA: Septation ring 95.8 3.8 8.2E-05 45.1 34.9 55 179-233 355-409 (560)
109 KOG0946 ER-Golgi vesicle-tethe 95.8 3.3 7.2E-05 47.2 24.0 141 146-288 737-882 (970)
110 TIGR03185 DNA_S_dndD DNA sulfu 95.8 4.3 9.3E-05 45.3 35.8 81 35-115 205-289 (650)
111 PF08614 ATG16: Autophagy prot 95.8 0.043 9.2E-07 52.0 8.4 93 188-289 87-179 (194)
112 PLN02939 transferase, transfer 95.8 5.6 0.00012 46.6 26.6 269 27-333 130-402 (977)
113 KOG0612 Rho-associated, coiled 95.7 6.4 0.00014 46.8 32.0 46 247-292 742-787 (1317)
114 KOG0962 DNA repair protein RAD 95.7 6.8 0.00015 47.0 32.4 46 12-57 210-255 (1294)
115 KOG1029 Endocytic adaptor prot 95.6 5.7 0.00012 45.3 31.0 99 139-241 472-573 (1118)
116 TIGR01843 type_I_hlyD type I s 95.6 3.4 7.3E-05 42.5 22.7 44 59-102 136-179 (423)
117 PF05911 DUF869: Plant protein 95.5 1.3 2.9E-05 50.5 20.2 135 138-292 23-158 (769)
118 PF09787 Golgin_A5: Golgin sub 95.5 4.6 0.0001 43.9 28.0 143 139-292 274-430 (511)
119 KOG1003 Actin filament-coating 95.5 2.6 5.5E-05 40.7 23.4 91 13-103 6-103 (205)
120 PF13851 GAS: Growth-arrest sp 95.4 1.4 3E-05 42.4 17.1 100 198-299 22-124 (201)
121 PRK10929 putative mechanosensi 95.3 8.3 0.00018 46.0 26.3 136 136-286 170-311 (1109)
122 PF00769 ERM: Ezrin/radixin/mo 95.3 0.48 1.1E-05 46.8 14.2 128 185-360 1-128 (246)
123 KOG4673 Transcription factor T 95.3 6.8 0.00015 44.2 34.0 146 65-223 451-607 (961)
124 PF09789 DUF2353: Uncharacteri 95.0 5.2 0.00011 41.3 21.3 166 64-241 6-171 (319)
125 smart00787 Spc7 Spc7 kinetocho 94.9 5.3 0.00011 41.1 21.8 30 138-167 171-200 (312)
126 PF04849 HAP1_N: HAP1 N-termin 94.9 5.3 0.00012 41.0 24.0 84 191-276 215-298 (306)
127 PF13514 AAA_27: AAA domain 94.9 11 0.00025 44.6 43.0 53 254-306 452-504 (1111)
128 COG0419 SbcC ATPase involved i 94.8 10 0.00022 44.0 43.1 26 336-361 594-619 (908)
129 PF14662 CCDC155: Coiled-coil 94.7 4.3 9.2E-05 39.1 23.3 179 74-296 8-186 (193)
130 PF11559 ADIP: Afadin- and alp 94.7 2.3 4.9E-05 38.5 15.6 71 146-220 80-150 (151)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 2.5 5.5E-05 37.7 15.7 128 145-292 2-129 (132)
132 COG4372 Uncharacterized protei 94.6 7.5 0.00016 41.2 28.9 222 22-294 64-285 (499)
133 COG5185 HEC1 Protein involved 94.6 8.4 0.00018 41.8 32.1 91 201-296 485-579 (622)
134 TIGR02977 phageshock_pspA phag 94.4 5.1 0.00011 38.7 19.0 104 193-296 28-134 (219)
135 KOG0980 Actin-binding protein 94.4 12 0.00027 43.1 29.5 194 50-271 355-550 (980)
136 KOG0962 DNA repair protein RAD 94.4 16 0.00034 44.1 33.9 53 138-191 877-929 (1294)
137 KOG0978 E3 ubiquitin ligase in 94.3 12 0.00026 42.4 29.6 188 68-295 434-621 (698)
138 PF08317 Spc7: Spc7 kinetochor 94.3 7.3 0.00016 39.9 26.9 25 140-164 178-202 (325)
139 PF09789 DUF2353: Uncharacteri 94.2 7.7 0.00017 40.1 21.7 132 34-176 11-163 (319)
140 TIGR01005 eps_transp_fam exopo 94.2 11 0.00024 42.7 23.1 47 195-241 287-333 (754)
141 KOG4809 Rab6 GTPase-interactin 94.1 11 0.00025 41.4 32.6 228 30-300 329-560 (654)
142 KOG0979 Structural maintenance 94.0 16 0.00035 42.8 26.5 149 67-241 181-335 (1072)
143 PF13870 DUF4201: Domain of un 93.9 5.4 0.00012 37.1 18.3 29 141-169 147-175 (177)
144 KOG0978 E3 ubiquitin ligase in 93.9 14 0.00031 41.9 38.6 100 247-350 496-595 (698)
145 PF10481 CENP-F_N: Cenp-F N-te 93.9 8.2 0.00018 39.1 18.8 70 29-98 15-84 (307)
146 KOG0963 Transcription factor/C 93.7 14 0.00031 41.2 36.5 32 84-115 185-216 (629)
147 PF07111 HCR: Alpha helical co 93.7 15 0.00033 41.5 43.8 47 70-116 245-291 (739)
148 TIGR00634 recN DNA repair prot 93.6 13 0.00029 40.7 22.9 38 78-115 165-202 (563)
149 TIGR03007 pepcterm_ChnLen poly 93.6 12 0.00026 40.1 22.8 43 199-241 250-292 (498)
150 PF06008 Laminin_I: Laminin Do 93.6 8.1 0.00018 38.2 31.6 127 78-228 77-203 (264)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.6 5.2 0.00011 35.7 17.3 39 15-53 7-45 (132)
152 PF08614 ATG16: Autophagy prot 93.5 0.62 1.3E-05 44.2 10.0 121 139-276 67-187 (194)
153 TIGR02680 conserved hypothetic 93.4 25 0.00053 43.0 39.8 129 20-170 225-357 (1353)
154 KOG0982 Centrosomal protein Nu 93.4 7.2 0.00016 41.7 18.1 200 133-364 209-418 (502)
155 PRK10246 exonuclease subunit S 93.4 22 0.00047 42.2 39.1 32 261-292 777-808 (1047)
156 KOG0946 ER-Golgi vesicle-tethe 93.3 19 0.00041 41.5 25.4 50 8-57 643-696 (970)
157 KOG0979 Structural maintenance 93.3 21 0.00046 41.9 28.5 113 83-219 243-355 (1072)
158 PF13851 GAS: Growth-arrest sp 93.3 8.2 0.00018 37.1 19.3 32 143-174 97-128 (201)
159 KOG0999 Microtubule-associated 93.1 17 0.00036 40.3 30.3 64 14-84 4-74 (772)
160 TIGR00634 recN DNA repair prot 93.1 16 0.00035 40.1 24.2 43 67-109 161-203 (563)
161 PRK10698 phage shock protein P 93.0 9.4 0.0002 37.2 20.4 52 190-241 93-144 (222)
162 PF12325 TMF_TATA_bd: TATA ele 92.7 4.3 9.3E-05 36.2 13.4 22 150-171 65-86 (120)
163 COG2433 Uncharacterized conser 92.7 1.6 3.5E-05 48.3 12.6 37 252-288 472-508 (652)
164 TIGR01000 bacteriocin_acc bact 92.6 16 0.00035 38.9 21.8 26 147-172 237-262 (457)
165 TIGR03007 pepcterm_ChnLen poly 92.5 17 0.00037 38.9 24.1 32 81-112 204-235 (498)
166 PF04156 IncA: IncA protein; 92.4 4.7 0.0001 37.5 14.1 39 252-290 149-187 (191)
167 PF04111 APG6: Autophagy prote 92.3 1.3 2.9E-05 45.3 11.0 123 30-169 7-129 (314)
168 PF10146 zf-C4H2: Zinc finger- 92.0 9.4 0.0002 37.6 16.0 92 19-110 12-103 (230)
169 PF10186 Atg14: UV radiation r 91.8 13 0.00028 36.4 17.1 87 141-227 22-108 (302)
170 PF15619 Lebercilin: Ciliary p 91.8 13 0.00027 35.8 23.8 27 248-274 165-191 (194)
171 PF06705 SF-assemblin: SF-asse 91.8 14 0.0003 36.2 29.1 197 19-241 6-214 (247)
172 COG1842 PspA Phage shock prote 91.6 15 0.00032 36.2 19.5 98 12-109 32-141 (225)
173 PF10146 zf-C4H2: Zinc finger- 91.4 8.7 0.00019 37.9 15.1 95 22-116 5-102 (230)
174 KOG4673 Transcription factor T 91.1 32 0.00069 39.1 31.6 98 251-358 527-635 (961)
175 PF10481 CENP-F_N: Cenp-F N-te 90.9 4.9 0.00011 40.6 12.9 90 198-296 41-130 (307)
176 PF12325 TMF_TATA_bd: TATA ele 90.9 10 0.00022 33.8 13.7 90 20-109 18-110 (120)
177 PRK10698 phage shock protein P 90.8 17 0.00037 35.5 18.6 24 340-364 193-216 (222)
178 COG4477 EzrA Negative regulato 90.8 30 0.00064 38.2 28.5 160 58-241 102-272 (570)
179 PF15254 CCDC14: Coiled-coil d 90.8 36 0.00078 39.1 21.0 236 12-292 285-532 (861)
180 PF04012 PspA_IM30: PspA/IM30 90.6 16 0.00035 34.9 17.9 53 189-241 91-143 (221)
181 PF06008 Laminin_I: Laminin Do 90.3 20 0.00043 35.4 28.6 94 16-109 22-115 (264)
182 TIGR01005 eps_transp_fam exopo 90.3 37 0.00079 38.5 23.8 30 251-280 373-402 (754)
183 PF10168 Nup88: Nuclear pore c 90.0 22 0.00048 40.6 18.7 104 56-171 561-664 (717)
184 COG4372 Uncharacterized protei 90.0 30 0.00064 36.9 27.6 58 184-241 226-283 (499)
185 PF06818 Fez1: Fez1; InterPro 90.0 20 0.00043 34.9 22.7 139 34-172 12-164 (202)
186 PF03148 Tektin: Tektin family 89.9 28 0.00061 36.6 34.5 114 178-292 247-362 (384)
187 PF09304 Cortex-I_coil: Cortex 89.9 6.7 0.00015 34.4 11.4 56 186-241 6-61 (107)
188 PF09730 BicD: Microtubule-ass 89.8 42 0.00092 38.4 35.0 114 32-165 27-147 (717)
189 PF12795 MscS_porin: Mechanose 89.4 22 0.00048 34.6 22.9 140 83-241 33-174 (240)
190 KOG0980 Actin-binding protein 89.4 49 0.0011 38.6 30.5 46 64-109 355-400 (980)
191 PF04012 PspA_IM30: PspA/IM30 89.4 20 0.00044 34.2 21.2 47 30-76 28-74 (221)
192 PF09304 Cortex-I_coil: Cortex 89.1 3.2 7E-05 36.3 8.8 74 211-293 3-76 (107)
193 PF04156 IncA: IncA protein; 89.0 19 0.00042 33.4 16.1 92 19-110 82-173 (191)
194 PF02403 Seryl_tRNA_N: Seryl-t 89.0 2.6 5.6E-05 36.0 8.2 78 40-121 30-107 (108)
195 PF07106 TBPIP: Tat binding pr 88.9 2.8 6E-05 38.7 9.0 64 83-167 74-137 (169)
196 PF11559 ADIP: Afadin- and alp 88.9 17 0.00038 32.8 15.5 96 12-110 53-148 (151)
197 COG5185 HEC1 Protein involved 88.9 40 0.00086 36.8 25.6 93 13-115 332-427 (622)
198 PF13166 AAA_13: AAA domain 88.9 44 0.00095 37.3 24.7 32 141-172 365-396 (712)
199 PF15188 CCDC-167: Coiled-coil 88.6 2.3 5E-05 35.8 7.3 66 144-235 3-68 (85)
200 PF10168 Nup88: Nuclear pore c 88.5 51 0.0011 37.7 20.8 35 136-170 636-670 (717)
201 COG4026 Uncharacterized protei 88.4 17 0.00037 36.0 14.2 41 75-115 164-204 (290)
202 PF09738 DUF2051: Double stran 88.4 33 0.00071 35.3 19.1 93 20-112 79-171 (302)
203 PF06818 Fez1: Fez1; InterPro 88.2 26 0.00057 34.0 17.9 42 60-101 17-58 (202)
204 PF00769 ERM: Ezrin/radixin/mo 88.2 22 0.00048 35.2 15.3 51 329-382 83-133 (246)
205 PF10186 Atg14: UV radiation r 88.2 27 0.00059 34.1 18.6 44 66-109 62-105 (302)
206 PF04849 HAP1_N: HAP1 N-termin 88.0 35 0.00076 35.2 24.3 96 198-313 201-296 (306)
207 PRK11281 hypothetical protein; 87.7 72 0.0016 38.4 28.9 41 251-291 289-329 (1113)
208 KOG4593 Mitotic checkpoint pro 87.6 56 0.0012 37.1 29.2 17 211-227 252-268 (716)
209 COG4026 Uncharacterized protei 87.5 6.5 0.00014 38.9 10.7 75 36-110 132-206 (290)
210 COG2433 Uncharacterized conser 87.4 6.7 0.00015 43.6 11.9 42 68-109 423-464 (652)
211 PRK10884 SH3 domain-containing 87.3 12 0.00027 36.2 12.6 80 22-111 90-169 (206)
212 PRK10246 exonuclease subunit S 87.3 72 0.0016 38.0 43.9 10 119-128 503-514 (1047)
213 PF04111 APG6: Autophagy prote 87.2 7.7 0.00017 39.8 11.8 85 199-292 46-130 (314)
214 PF04582 Reo_sigmaC: Reovirus 86.7 0.81 1.8E-05 47.2 4.3 93 18-110 28-120 (326)
215 PF09755 DUF2046: Uncharacteri 86.5 43 0.00093 34.6 25.5 231 70-353 23-254 (310)
216 PF10498 IFT57: Intra-flagella 85.7 36 0.00078 35.8 15.9 65 51-115 196-261 (359)
217 KOG4302 Microtubule-associated 85.6 71 0.0015 36.3 20.1 100 79-181 101-202 (660)
218 PF01920 Prefoldin_2: Prefoldi 85.5 8.7 0.00019 32.0 9.4 91 79-174 3-97 (106)
219 PF14915 CCDC144C: CCDC144C pr 85.3 48 0.001 34.1 31.8 143 146-297 137-300 (305)
220 TIGR02338 gimC_beta prefoldin, 84.8 17 0.00036 31.4 11.0 93 77-174 6-102 (110)
221 PRK10884 SH3 domain-containing 84.7 8.3 0.00018 37.4 9.9 31 140-170 87-117 (206)
222 PF02403 Seryl_tRNA_N: Seryl-t 84.6 12 0.00027 31.8 10.0 36 139-174 67-102 (108)
223 TIGR01000 bacteriocin_acc bact 84.5 61 0.0013 34.6 21.8 23 90-112 99-121 (457)
224 PF07106 TBPIP: Tat binding pr 84.4 15 0.00033 33.8 11.3 27 280-306 121-147 (169)
225 COG4477 EzrA Negative regulato 84.1 74 0.0016 35.3 33.7 210 11-241 197-420 (570)
226 PF13870 DUF4201: Domain of un 83.9 37 0.00079 31.5 21.6 167 86-282 4-173 (177)
227 KOG1937 Uncharacterized conser 83.8 70 0.0015 34.8 24.8 27 215-241 490-519 (521)
228 PF14197 Cep57_CLD_2: Centroso 83.8 21 0.00045 28.8 10.3 64 15-78 2-65 (69)
229 PF09738 DUF2051: Double stran 83.7 13 0.00028 38.2 11.3 72 154-233 78-149 (302)
230 KOG4603 TBP-1 interacting prot 83.7 41 0.00088 32.2 13.6 103 82-215 80-182 (201)
231 TIGR03017 EpsF chain length de 83.7 61 0.0013 34.0 24.8 86 145-241 214-299 (444)
232 KOG0804 Cytoplasmic Zn-finger 83.1 33 0.00071 37.2 14.2 91 141-241 323-413 (493)
233 KOG0243 Kinesin-like protein [ 82.9 1.1E+02 0.0024 36.4 20.0 67 148-220 406-472 (1041)
234 KOG0972 Huntingtin interacting 82.8 37 0.0008 35.0 13.8 115 30-161 239-357 (384)
235 TIGR02977 phageshock_pspA phag 82.1 50 0.0011 31.9 23.1 51 28-78 27-77 (219)
236 PF05278 PEARLI-4: Arabidopsis 82.0 38 0.00082 34.3 13.6 96 20-115 154-255 (269)
237 TIGR01010 BexC_CtrB_KpsE polys 81.9 47 0.001 34.1 14.9 23 140-162 243-265 (362)
238 PF10234 Cluap1: Clusterin-ass 81.8 16 0.00036 36.8 11.0 74 22-95 166-239 (267)
239 PF15397 DUF4618: Domain of un 81.7 62 0.0013 32.6 23.3 58 88-164 81-138 (258)
240 PF14915 CCDC144C: CCDC144C pr 81.7 68 0.0015 33.0 30.6 106 179-293 134-239 (305)
241 PF03962 Mnd1: Mnd1 family; I 81.6 34 0.00074 32.6 12.7 31 139-169 135-165 (188)
242 PF08647 BRE1: BRE1 E3 ubiquit 81.5 26 0.00056 29.8 10.6 68 73-163 2-69 (96)
243 KOG0288 WD40 repeat protein Ti 81.3 55 0.0012 35.1 14.9 62 180-241 11-72 (459)
244 PF07798 DUF1640: Protein of u 81.2 48 0.001 31.0 17.7 24 139-162 73-96 (177)
245 PRK09343 prefoldin subunit bet 81.2 27 0.0006 30.8 11.1 94 76-174 9-106 (121)
246 TIGR02338 gimC_beta prefoldin, 81.0 18 0.00038 31.3 9.7 87 143-229 7-107 (110)
247 KOG0243 Kinesin-like protein [ 80.6 1.2E+02 0.0027 36.1 18.8 34 138-171 440-473 (1041)
248 COG1842 PspA Phage shock prote 80.2 63 0.0014 31.8 21.9 154 28-218 27-181 (225)
249 PF01920 Prefoldin_2: Prefoldi 80.1 18 0.00038 30.1 9.2 24 147-170 6-29 (106)
250 KOG2129 Uncharacterized conser 79.6 96 0.0021 33.5 21.4 40 135-174 242-281 (552)
251 PF12329 TMF_DNA_bd: TATA elem 79.1 20 0.00044 29.2 8.8 65 219-292 7-71 (74)
252 PLN03229 acetyl-coenzyme A car 78.5 1.3E+02 0.0029 34.6 19.6 17 140-156 529-545 (762)
253 PF12777 MT: Microtubule-bindi 78.1 88 0.0019 32.3 19.9 102 21-123 4-117 (344)
254 cd00632 Prefoldin_beta Prefold 77.8 26 0.00056 29.9 9.6 32 141-172 8-39 (105)
255 KOG4593 Mitotic checkpoint pro 76.4 1.5E+02 0.0032 33.9 36.1 26 341-366 502-527 (716)
256 PF02994 Transposase_22: L1 tr 76.2 9.5 0.00021 40.0 7.8 49 64-112 141-189 (370)
257 PF05266 DUF724: Protein of un 76.0 76 0.0016 30.4 13.2 57 59-115 123-179 (190)
258 PF04582 Reo_sigmaC: Reovirus 75.9 3.7 8E-05 42.4 4.5 22 147-168 127-148 (326)
259 KOG0992 Uncharacterized conser 75.6 1.4E+02 0.0029 33.1 27.0 41 338-381 388-428 (613)
260 TIGR01010 BexC_CtrB_KpsE polys 75.4 77 0.0017 32.6 14.1 89 147-241 171-259 (362)
261 PRK15178 Vi polysaccharide exp 75.3 1.3E+02 0.0027 32.7 17.9 58 90-163 281-338 (434)
262 PF14257 DUF4349: Domain of un 75.1 13 0.00028 36.6 8.1 66 84-170 128-193 (262)
263 PF10805 DUF2730: Protein of u 74.9 16 0.00034 31.6 7.6 60 87-167 34-93 (106)
264 PF09787 Golgin_A5: Golgin sub 74.7 1.4E+02 0.0029 32.7 26.0 95 178-286 337-431 (511)
265 PF03962 Mnd1: Mnd1 family; I 74.5 81 0.0018 30.0 13.2 94 20-114 71-168 (188)
266 PF07889 DUF1664: Protein of u 73.7 69 0.0015 28.9 11.9 32 82-113 90-121 (126)
267 KOG0239 Kinesin (KAR3 subfamil 73.6 1.7E+02 0.0037 33.4 17.5 37 258-294 280-319 (670)
268 KOG1853 LIS1-interacting prote 73.6 81 0.0018 32.0 12.9 27 268-294 133-159 (333)
269 PF05384 DegS: Sensor protein 73.5 80 0.0017 29.5 18.5 46 10-55 19-64 (159)
270 KOG0244 Kinesin-like protein [ 73.0 1.8E+02 0.004 34.2 17.2 86 66-177 302-387 (913)
271 TIGR03017 EpsF chain length de 72.7 1.3E+02 0.0028 31.6 25.4 23 256-278 344-366 (444)
272 PF02994 Transposase_22: L1 tr 72.6 8.8 0.00019 40.2 6.5 94 23-116 89-186 (370)
273 PRK12704 phosphodiesterase; Pr 72.6 1.6E+02 0.0034 32.5 19.2 42 350-392 182-230 (520)
274 COG1382 GimC Prefoldin, chaper 72.5 72 0.0016 28.6 12.0 47 9-55 11-57 (119)
275 PF15290 Syntaphilin: Golgi-lo 72.4 26 0.00056 35.7 9.3 28 251-278 121-148 (305)
276 PF12777 MT: Microtubule-bindi 70.2 24 0.00052 36.4 9.0 83 22-104 232-314 (344)
277 PF04728 LPP: Lipoprotein leuc 69.8 31 0.00066 27.0 7.2 25 141-165 26-50 (56)
278 PF06005 DUF904: Protein of un 69.7 59 0.0013 26.5 11.0 56 45-100 10-65 (72)
279 PF00015 MCPsignal: Methyl-acc 69.5 92 0.002 28.6 17.9 10 106-115 60-69 (213)
280 KOG1962 B-cell receptor-associ 69.3 35 0.00075 33.5 9.2 62 222-292 149-210 (216)
281 PLN02678 seryl-tRNA synthetase 69.3 37 0.00081 36.7 10.4 83 43-129 37-119 (448)
282 PF13166 AAA_13: AAA domain 69.1 2E+02 0.0043 32.2 24.2 24 144-167 361-384 (712)
283 TIGR02449 conserved hypothetic 69.0 18 0.00039 29.1 6.0 60 264-327 3-62 (65)
284 PLN03229 acetyl-coenzyme A car 68.9 2.3E+02 0.0049 32.9 24.0 25 142-166 600-625 (762)
285 COG3524 KpsE Capsule polysacch 68.7 1.5E+02 0.0033 30.8 15.4 67 95-177 223-298 (372)
286 PF14197 Cep57_CLD_2: Centroso 68.7 41 0.00088 27.2 8.1 40 202-241 4-43 (69)
287 COG3937 Uncharacterized conser 68.2 85 0.0019 27.7 11.9 79 33-111 18-106 (108)
288 KOG1760 Molecular chaperone Pr 67.7 55 0.0012 29.6 9.3 79 141-219 25-118 (131)
289 PF05266 DUF724: Protein of un 67.6 1.2E+02 0.0026 29.1 13.8 54 56-109 127-180 (190)
290 KOG0804 Cytoplasmic Zn-finger 67.2 1.8E+02 0.0039 31.7 14.6 38 71-108 365-402 (493)
291 COG1730 GIM5 Predicted prefold 67.0 74 0.0016 29.4 10.5 40 69-108 8-47 (145)
292 PF12795 MscS_porin: Mechanose 66.9 1.3E+02 0.0028 29.3 23.5 99 56-168 81-179 (240)
293 KOG1937 Uncharacterized conser 66.6 2E+02 0.0044 31.4 27.0 73 81-174 345-417 (521)
294 TIGR02231 conserved hypothetic 66.4 87 0.0019 34.1 12.7 98 18-115 71-172 (525)
295 PF05335 DUF745: Protein of un 66.0 1.3E+02 0.0028 28.9 15.1 94 19-112 68-168 (188)
296 PF07445 priB_priC: Primosomal 65.9 1.2E+02 0.0026 28.5 13.2 100 49-170 66-169 (173)
297 TIGR00414 serS seryl-tRNA synt 65.8 1E+02 0.0022 32.9 12.7 85 41-128 32-116 (418)
298 KOG4360 Uncharacterized coiled 65.6 2.2E+02 0.0049 31.6 19.3 84 140-231 220-303 (596)
299 PF15290 Syntaphilin: Golgi-lo 65.6 1.4E+02 0.003 30.6 12.8 33 151-187 122-154 (305)
300 PF05384 DegS: Sensor protein 65.3 1.2E+02 0.0026 28.4 20.5 17 150-166 95-111 (159)
301 PF12072 DUF3552: Domain of un 65.1 1.3E+02 0.0028 28.7 16.0 29 200-228 68-96 (201)
302 TIGR03319 YmdA_YtgF conserved 64.9 2.2E+02 0.0048 31.3 19.2 43 350-393 176-225 (514)
303 PF07439 DUF1515: Protein of u 63.9 55 0.0012 28.9 8.4 59 58-116 6-68 (112)
304 PF06005 DUF904: Protein of un 63.8 79 0.0017 25.7 10.2 30 61-90 12-41 (72)
305 KOG1899 LAR transmembrane tyro 63.8 2.7E+02 0.0058 31.8 21.6 46 339-386 278-323 (861)
306 PRK03947 prefoldin subunit alp 63.7 1.1E+02 0.0023 27.2 14.4 46 64-109 91-136 (140)
307 KOG0239 Kinesin (KAR3 subfamil 63.6 2.7E+02 0.0059 31.8 18.2 59 183-241 228-286 (670)
308 KOG0972 Huntingtin interacting 63.4 1.9E+02 0.0041 30.0 14.3 123 180-327 225-351 (384)
309 PF04102 SlyX: SlyX; InterPro 63.4 51 0.0011 26.3 7.7 51 65-115 2-52 (69)
310 PF05377 FlaC_arch: Flagella a 62.7 34 0.00073 26.7 6.2 33 72-104 5-37 (55)
311 PF06810 Phage_GP20: Phage min 62.7 58 0.0012 30.1 9.0 46 186-231 3-48 (155)
312 KOG2264 Exostosin EXT1L [Signa 62.6 38 0.00082 37.8 8.8 69 76-167 81-149 (907)
313 PRK02793 phi X174 lysis protei 62.3 83 0.0018 25.5 9.1 52 65-116 6-57 (72)
314 KOG1853 LIS1-interacting prote 62.2 1.9E+02 0.004 29.5 16.3 63 179-241 95-157 (333)
315 PRK05431 seryl-tRNA synthetase 62.2 63 0.0014 34.5 10.4 46 83-128 68-113 (425)
316 PF10458 Val_tRNA-synt_C: Valy 62.0 38 0.00083 26.6 6.7 62 87-164 3-64 (66)
317 PF07889 DUF1664: Protein of u 62.0 1.2E+02 0.0027 27.3 13.5 46 69-114 70-115 (126)
318 PRK09841 cryptic autophosphory 61.8 2.9E+02 0.0062 31.5 17.5 20 142-161 342-361 (726)
319 KOG1962 B-cell receptor-associ 61.7 48 0.001 32.6 8.6 62 201-271 149-210 (216)
320 KOG4360 Uncharacterized coiled 61.7 2.6E+02 0.0057 31.0 20.1 117 143-288 163-281 (596)
321 PF07989 Microtub_assoc: Micro 61.3 51 0.0011 27.0 7.5 65 219-292 2-67 (75)
322 PLN02678 seryl-tRNA synthetase 61.1 66 0.0014 34.8 10.4 74 74-174 33-106 (448)
323 PRK03947 prefoldin subunit alp 60.3 1.2E+02 0.0027 26.8 13.7 36 13-48 8-43 (140)
324 KOG0249 LAR-interacting protei 60.1 3.3E+02 0.0071 31.6 19.2 65 142-208 94-158 (916)
325 TIGR02449 conserved hypothetic 59.8 91 0.002 25.1 8.9 60 20-79 2-61 (65)
326 TIGR02231 conserved hypothetic 59.6 1.3E+02 0.0027 32.8 12.4 98 12-109 72-173 (525)
327 COG0172 SerS Seryl-tRNA synthe 59.4 1.4E+02 0.0031 32.3 12.3 86 39-127 29-114 (429)
328 PF08826 DMPK_coil: DMPK coile 59.2 82 0.0018 25.0 8.0 39 179-217 22-60 (61)
329 TIGR03545 conserved hypothetic 59.0 1.1E+02 0.0023 34.2 11.8 82 67-172 164-245 (555)
330 PF15456 Uds1: Up-regulated Du 58.8 1.1E+02 0.0024 27.4 9.8 37 134-171 17-53 (124)
331 PRK02119 hypothetical protein; 58.8 98 0.0021 25.2 9.3 54 63-116 5-58 (73)
332 PF11570 E2R135: Coiled-coil r 58.6 1.5E+02 0.0032 27.2 12.2 100 51-174 6-105 (136)
333 KOG2991 Splicing regulator [RN 58.5 2.2E+02 0.0047 29.1 23.9 117 142-267 173-298 (330)
334 PF10805 DUF2730: Protein of u 58.1 1.2E+02 0.0027 26.1 9.8 42 59-100 48-91 (106)
335 PRK04406 hypothetical protein; 57.6 1.1E+02 0.0023 25.2 9.5 53 64-116 8-60 (75)
336 PF06156 DUF972: Protein of un 57.5 30 0.00064 30.3 5.8 49 193-241 5-53 (107)
337 PF09755 DUF2046: Uncharacteri 57.1 2.5E+02 0.0053 29.2 28.3 93 13-105 29-130 (310)
338 PF13863 DUF4200: Domain of un 57.0 1.3E+02 0.0028 26.0 12.4 33 142-174 10-42 (126)
339 cd00632 Prefoldin_beta Prefold 56.9 1.2E+02 0.0027 25.7 13.7 28 18-45 6-33 (105)
340 PF08826 DMPK_coil: DMPK coile 56.5 77 0.0017 25.1 7.4 43 251-293 15-57 (61)
341 PF06785 UPF0242: Uncharacteri 55.9 2.7E+02 0.0059 29.4 14.6 103 12-114 107-220 (401)
342 PF09728 Taxilin: Myosin-like 55.9 2.5E+02 0.0053 28.9 36.0 14 354-367 284-297 (309)
343 cd00890 Prefoldin Prefoldin is 55.9 1.3E+02 0.0029 25.7 9.8 37 138-174 86-122 (129)
344 PF04912 Dynamitin: Dynamitin 55.8 2.7E+02 0.0058 29.2 24.6 20 94-113 208-227 (388)
345 PF12329 TMF_DNA_bd: TATA elem 55.5 1.1E+02 0.0024 24.8 10.8 25 67-91 33-57 (74)
346 PRK10803 tol-pal system protei 55.4 51 0.0011 32.9 7.9 48 140-191 55-102 (263)
347 PF15456 Uds1: Up-regulated Du 55.0 1.3E+02 0.0027 27.1 9.5 45 146-195 22-66 (124)
348 cd00890 Prefoldin Prefoldin is 54.8 1.4E+02 0.003 25.6 12.8 41 15-55 3-43 (129)
349 COG0497 RecN ATPase involved i 54.3 3.6E+02 0.0078 30.3 22.2 20 273-292 340-359 (557)
350 TIGR00293 prefoldin, archaeal 53.5 1.1E+02 0.0023 26.7 8.8 28 144-171 4-31 (126)
351 KOG4657 Uncharacterized conser 52.5 2.5E+02 0.0055 28.0 12.7 32 261-292 93-124 (246)
352 PF13747 DUF4164: Domain of un 52.5 1.4E+02 0.0031 25.1 10.7 44 70-113 35-78 (89)
353 KOG3091 Nuclear pore complex, 51.9 3.7E+02 0.008 29.7 14.3 163 120-326 322-484 (508)
354 PRK00106 hypothetical protein; 51.5 3.9E+02 0.0084 29.8 18.9 43 350-393 197-246 (535)
355 PF10267 Tmemb_cc2: Predicted 51.1 3.3E+02 0.0072 29.1 13.4 88 139-233 212-299 (395)
356 PLN02320 seryl-tRNA synthetase 51.0 1E+02 0.0022 34.0 9.8 48 82-129 131-178 (502)
357 PF14712 Snapin_Pallidin: Snap 50.9 1.4E+02 0.003 24.5 12.4 81 33-114 8-90 (92)
358 PRK15178 Vi polysaccharide exp 50.8 3.6E+02 0.0078 29.3 15.2 26 88-113 314-339 (434)
359 PRK05431 seryl-tRNA synthetase 50.7 1.3E+02 0.0027 32.3 10.4 34 141-174 68-101 (425)
360 PF04728 LPP: Lipoprotein leuc 50.5 1.1E+02 0.0023 24.1 7.2 51 140-194 4-54 (56)
361 KOG2264 Exostosin EXT1L [Signa 50.0 71 0.0015 35.8 8.3 30 212-241 81-110 (907)
362 PRK11519 tyrosine kinase; Prov 49.9 2.3E+02 0.005 32.3 12.9 29 146-174 267-295 (719)
363 PF05377 FlaC_arch: Flagella a 49.8 1.2E+02 0.0026 23.7 7.4 17 67-83 28-44 (55)
364 PRK04325 hypothetical protein; 49.7 1.4E+02 0.0031 24.3 8.8 50 66-115 8-57 (74)
365 PF10211 Ax_dynein_light: Axon 49.7 2.4E+02 0.0051 26.9 12.1 26 136-161 63-88 (189)
366 KOG4074 Leucine zipper nuclear 49.3 78 0.0017 32.8 8.0 17 355-371 204-220 (383)
367 PRK09841 cryptic autophosphory 49.2 2.1E+02 0.0046 32.6 12.5 124 148-278 269-394 (726)
368 PF13863 DUF4200: Domain of un 49.1 1.7E+02 0.0038 25.1 15.3 91 18-108 14-108 (126)
369 PRK13169 DNA replication intia 49.0 48 0.001 29.2 5.8 49 193-241 5-53 (110)
370 PF06705 SF-assemblin: SF-asse 48.6 2.7E+02 0.0059 27.2 30.0 132 143-292 82-214 (247)
371 PF06156 DUF972: Protein of un 48.3 67 0.0014 28.1 6.5 52 199-259 4-55 (107)
372 PF12761 End3: Actin cytoskele 48.3 2.7E+02 0.0058 27.1 11.7 43 19-61 97-150 (195)
373 TIGR00293 prefoldin, archaeal 47.9 1.7E+02 0.0036 25.4 9.1 34 16-49 4-37 (126)
374 COG1730 GIM5 Predicted prefold 47.8 2.3E+02 0.005 26.2 10.8 39 133-171 88-126 (145)
375 PRK10869 recombination and rep 47.5 4.3E+02 0.0094 29.3 28.0 44 72-115 155-198 (553)
376 PF02050 FliJ: Flagellar FliJ 47.5 1.6E+02 0.0034 24.2 14.1 28 65-92 50-77 (123)
377 PF14257 DUF4349: Domain of un 47.0 58 0.0012 32.0 6.7 32 83-114 164-195 (262)
378 PF04508 Pox_A_type_inc: Viral 46.7 23 0.00051 22.9 2.5 19 154-172 2-20 (23)
379 PF15294 Leu_zip: Leucine zipp 46.6 3.4E+02 0.0074 27.8 14.1 19 138-156 189-207 (278)
380 PLN02320 seryl-tRNA synthetase 46.5 1.4E+02 0.003 33.0 10.0 36 139-174 130-165 (502)
381 PRK00846 hypothetical protein; 46.4 1.7E+02 0.0037 24.3 9.7 55 62-116 8-62 (77)
382 PF06810 Phage_GP20: Phage min 46.4 2.4E+02 0.0053 26.0 10.9 21 150-170 55-75 (155)
383 KOG0288 WD40 repeat protein Ti 46.3 4.2E+02 0.0091 28.8 15.5 72 36-107 10-81 (459)
384 PF13874 Nup54: Nucleoporin co 46.1 1.8E+02 0.004 26.2 9.3 92 23-114 35-126 (141)
385 PRK13182 racA polar chromosome 46.1 1.5E+02 0.0033 28.1 9.0 24 87-110 124-147 (175)
386 COG1382 GimC Prefoldin, chaper 45.6 2.3E+02 0.0049 25.5 11.7 32 143-174 74-105 (119)
387 KOG0992 Uncharacterized conser 45.4 4.8E+02 0.01 29.1 26.6 84 138-228 345-428 (613)
388 PRK15396 murein lipoprotein; P 45.4 1E+02 0.0022 25.7 6.8 52 139-194 25-76 (78)
389 PF15294 Leu_zip: Leucine zipp 45.3 3.6E+02 0.0077 27.6 27.8 41 137-177 123-163 (278)
390 KOG0240 Kinesin (SMY1 subfamil 45.3 5E+02 0.011 29.3 18.2 85 23-107 412-496 (607)
391 KOG4438 Centromere-associated 45.2 4.4E+02 0.0095 28.7 23.6 35 140-174 174-208 (446)
392 PF08172 CASP_C: CASP C termin 45.0 3.2E+02 0.007 27.3 11.6 33 78-110 3-35 (248)
393 PF10267 Tmemb_cc2: Predicted 44.9 4.2E+02 0.0092 28.4 15.6 100 13-115 214-318 (395)
394 PRK10636 putative ABC transpor 44.9 1.4E+02 0.0031 33.4 10.1 72 84-171 559-630 (638)
395 PRK02119 hypothetical protein; 44.8 1.7E+02 0.0036 23.8 7.9 23 86-108 35-57 (73)
396 KOG0249 LAR-interacting protei 44.7 5.7E+02 0.012 29.8 17.7 24 251-274 234-257 (916)
397 PF06548 Kinesin-related: Kine 44.5 4.6E+02 0.01 28.7 26.1 197 15-251 274-482 (488)
398 COG3352 FlaC Putative archaeal 43.9 2E+02 0.0043 27.0 9.1 98 12-116 45-143 (157)
399 TIGR00414 serS seryl-tRNA synt 43.7 1.7E+02 0.0036 31.3 10.0 34 141-174 71-104 (418)
400 PRK13729 conjugal transfer pil 43.6 52 0.0011 35.9 6.2 24 197-220 77-100 (475)
401 COG1561 Uncharacterized stress 43.1 3.9E+02 0.0085 27.5 13.4 64 81-165 212-289 (290)
402 PRK10361 DNA recombination pro 43.1 4.9E+02 0.011 28.6 18.2 144 78-257 33-196 (475)
403 PF10779 XhlA: Haemolysin XhlA 42.8 1.7E+02 0.0037 23.3 7.9 50 21-70 2-51 (71)
404 PF06428 Sec2p: GDP/GTP exchan 42.7 23 0.0005 30.7 2.7 78 199-298 11-88 (100)
405 KOG3647 Predicted coiled-coil 42.7 2.9E+02 0.0062 28.4 10.7 71 22-92 109-179 (338)
406 PRK11519 tyrosine kinase; Prov 42.7 5.6E+02 0.012 29.2 17.6 19 144-162 344-362 (719)
407 PF03961 DUF342: Protein of un 42.2 1.6E+02 0.0035 31.5 9.6 77 138-214 326-407 (451)
408 TIGR02894 DNA_bind_RsfA transc 41.6 3.1E+02 0.0067 25.9 10.8 53 43-95 101-153 (161)
409 PF13935 Ead_Ea22: Ead/Ea22-li 41.6 2.3E+02 0.0051 25.5 9.2 38 14-51 70-109 (139)
410 PF01442 Apolipoprotein: Apoli 41.5 2.6E+02 0.0056 24.9 22.1 194 58-285 3-202 (202)
411 TIGR03752 conj_TIGR03752 integ 41.2 2.3E+02 0.0051 31.0 10.5 29 141-169 111-139 (472)
412 KOG4571 Activating transcripti 41.1 55 0.0012 33.5 5.5 45 213-266 244-288 (294)
413 KOG4603 TBP-1 interacting prot 41.0 2.6E+02 0.0056 26.9 9.5 68 18-85 79-148 (201)
414 PF00170 bZIP_1: bZIP transcri 40.5 1.7E+02 0.0036 22.6 7.1 40 52-91 18-57 (64)
415 PRK10929 putative mechanosensi 39.5 7.9E+02 0.017 30.0 30.2 29 141-169 104-132 (1109)
416 PF04645 DUF603: Protein of un 39.5 3.5E+02 0.0076 25.9 12.5 71 45-115 60-132 (181)
417 PF08606 Prp19: Prp19/Pso4-lik 39.4 2.1E+02 0.0046 23.4 8.7 40 18-57 8-47 (70)
418 PF05103 DivIVA: DivIVA protei 39.4 19 0.0004 31.3 1.8 16 354-369 112-127 (131)
419 PF05600 DUF773: Protein of un 38.4 5.5E+02 0.012 28.3 13.1 65 49-113 428-492 (507)
420 PF07111 HCR: Alpha helical co 38.1 6.9E+02 0.015 28.9 32.6 178 58-241 160-383 (739)
421 PF13094 CENP-Q: CENP-Q, a CEN 37.8 3.2E+02 0.0068 24.9 13.7 55 56-110 30-84 (160)
422 PHA02414 hypothetical protein 37.6 2.2E+02 0.0047 24.9 7.8 68 153-220 4-81 (111)
423 PF08172 CASP_C: CASP C termin 37.2 4.4E+02 0.0095 26.3 12.1 96 14-109 2-135 (248)
424 PRK01203 prefoldin subunit alp 37.2 2.9E+02 0.0064 25.1 9.0 34 139-172 87-120 (130)
425 COG3096 MukB Uncharacterized p 37.1 7.7E+02 0.017 29.2 28.2 249 31-314 835-1115(1480)
426 KOG2751 Beclin-like protein [S 36.8 5.9E+02 0.013 27.7 15.3 81 30-110 141-233 (447)
427 PF05546 She9_MDM33: She9 / Md 36.8 4.2E+02 0.0091 26.0 12.6 34 139-172 32-65 (207)
428 PF10212 TTKRSYEDQ: Predicted 36.5 6.4E+02 0.014 28.1 13.5 59 31-92 419-480 (518)
429 PF04102 SlyX: SlyX; InterPro 36.5 2.2E+02 0.0047 22.7 7.5 47 62-108 6-52 (69)
430 KOG1899 LAR transmembrane tyro 36.4 7.2E+02 0.016 28.6 20.6 142 16-172 109-257 (861)
431 COG5570 Uncharacterized small 36.4 96 0.0021 24.1 4.9 19 251-269 37-55 (57)
432 PF09744 Jnk-SapK_ap_N: JNK_SA 36.3 3.6E+02 0.0079 25.2 13.8 81 28-111 32-112 (158)
433 PF04645 DUF603: Protein of un 35.9 3E+02 0.0066 26.3 9.1 83 146-241 75-162 (181)
434 COG5302 Post-segregation antit 35.7 43 0.00093 27.9 3.1 46 345-398 31-77 (80)
435 PF04912 Dynamitin: Dynamitin 35.6 5.4E+02 0.012 27.0 17.1 71 140-214 313-386 (388)
436 PF04100 Vps53_N: Vps53-like, 35.4 5.6E+02 0.012 27.1 17.2 89 24-115 17-105 (383)
437 PRK00295 hypothetical protein; 35.4 2.3E+02 0.005 22.6 8.8 49 67-115 5-53 (68)
438 PRK00736 hypothetical protein; 35.3 2.3E+02 0.005 22.6 8.5 50 66-115 4-53 (68)
439 PF09728 Taxilin: Myosin-like 35.2 5.1E+02 0.011 26.6 33.6 102 14-115 18-127 (309)
440 PF03961 DUF342: Protein of un 35.2 2.2E+02 0.0048 30.4 9.4 33 82-114 376-408 (451)
441 PF05791 Bacillus_HBL: Bacillu 35.1 3.9E+02 0.0084 25.2 12.6 27 148-174 68-94 (184)
442 PF08581 Tup_N: Tup N-terminal 35.0 2.6E+02 0.0057 23.2 8.9 55 179-233 8-62 (79)
443 KOG2391 Vacuolar sorting prote 34.9 3.9E+02 0.0085 28.2 10.6 67 49-115 221-287 (365)
444 PRK00409 recombination and DNA 34.1 5.8E+02 0.013 29.6 13.0 13 18-30 151-163 (782)
445 KOG4657 Uncharacterized conser 34.1 4.9E+02 0.011 26.0 15.7 80 30-110 43-122 (246)
446 PF04124 Dor1: Dor1-like famil 34.1 4E+02 0.0088 27.3 10.8 86 151-240 12-97 (338)
447 PF06698 DUF1192: Protein of u 34.0 75 0.0016 25.1 4.1 34 135-168 17-50 (59)
448 PF12761 End3: Actin cytoskele 33.9 3.2E+02 0.0068 26.6 9.2 89 138-230 95-194 (195)
449 PF14389 Lzipper-MIP1: Leucine 33.9 2.8E+02 0.0061 23.2 10.1 34 138-171 53-86 (88)
450 PF05278 PEARLI-4: Arabidopsis 33.8 5.3E+02 0.012 26.3 14.7 49 62-110 209-257 (269)
451 PRK11578 macrolide transporter 33.6 5.4E+02 0.012 26.4 12.8 26 88-113 158-183 (370)
452 PF14073 Cep57_CLD: Centrosome 33.4 4.4E+02 0.0096 25.3 13.5 95 12-106 58-152 (178)
453 COG3352 FlaC Putative archaeal 33.0 4.2E+02 0.0091 24.9 10.4 109 6-114 14-134 (157)
454 PF14992 TMCO5: TMCO5 family 32.9 5.6E+02 0.012 26.3 13.3 17 281-297 166-182 (280)
455 PF13949 ALIX_LYPXL_bnd: ALIX 32.7 4.9E+02 0.011 25.6 30.0 202 13-237 24-231 (296)
456 COG5570 Uncharacterized small 32.7 1.4E+02 0.0029 23.3 5.2 24 138-161 32-55 (57)
457 PF10234 Cluap1: Clusterin-ass 32.7 5.5E+02 0.012 26.1 16.3 20 146-165 197-216 (267)
458 TIGR02971 heterocyst_DevB ABC 32.6 5.2E+02 0.011 25.8 13.8 92 24-115 96-206 (327)
459 PF04871 Uso1_p115_C: Uso1 / p 32.0 3.9E+02 0.0084 24.2 15.2 55 62-116 57-112 (136)
460 PF05529 Bap31: B-cell recepto 31.8 3.2E+02 0.0068 25.6 8.9 31 139-169 161-191 (192)
461 PLN03188 kinesin-12 family pro 31.8 1.1E+03 0.024 29.3 24.4 158 51-241 1077-1242(1320)
462 PRK04406 hypothetical protein; 31.4 2.9E+02 0.0063 22.6 8.3 33 75-107 26-58 (75)
463 PRK13729 conjugal transfer pil 31.3 1.3E+02 0.0028 33.0 6.8 42 251-292 80-121 (475)
464 PF05546 She9_MDM33: She9 / Md 31.3 5.1E+02 0.011 25.4 16.0 45 56-100 35-79 (207)
465 PRK10869 recombination and rep 31.0 7.7E+02 0.017 27.3 28.2 36 179-214 300-335 (553)
466 PF15397 DUF4618: Domain of un 30.9 5.8E+02 0.013 25.8 20.5 31 78-108 78-108 (258)
467 PRK13169 DNA replication intia 30.9 1.8E+02 0.0039 25.7 6.5 43 199-241 4-46 (110)
468 COG5293 Predicted ATPase [Gene 30.7 7.8E+02 0.017 27.3 20.6 34 208-241 340-373 (591)
469 PRK14011 prefoldin subunit alp 30.5 4.3E+02 0.0093 24.3 12.4 54 132-189 81-134 (144)
470 PF07851 TMPIT: TMPIT-like pro 30.3 6.6E+02 0.014 26.3 12.1 24 145-168 67-90 (330)
471 KOG2629 Peroxisomal membrane a 30.0 5E+02 0.011 26.8 10.2 29 87-115 167-195 (300)
472 cd00584 Prefoldin_alpha Prefol 29.9 3.7E+02 0.008 23.3 13.1 40 16-55 4-43 (129)
473 TIGR03319 YmdA_YtgF conserved 29.9 7.9E+02 0.017 27.1 20.4 7 387-393 200-206 (514)
474 PF00418 Tubulin-binding: Tau 29.8 30 0.00066 24.0 1.2 9 388-396 14-22 (31)
475 PF02050 FliJ: Flagellar FliJ 29.7 3.1E+02 0.0067 22.3 15.0 86 16-108 10-100 (123)
476 PF09486 HrpB7: Bacterial type 29.6 4.8E+02 0.01 24.5 17.3 82 34-115 17-106 (158)
477 PF00170 bZIP_1: bZIP transcri 29.6 2.6E+02 0.0057 21.5 9.5 20 68-87 27-46 (64)
478 PF05103 DivIVA: DivIVA protei 29.6 88 0.0019 27.1 4.4 31 85-115 22-52 (131)
479 PF10224 DUF2205: Predicted co 29.5 1.8E+02 0.0038 24.4 5.8 43 199-241 19-61 (80)
480 PRK12704 phosphodiesterase; Pr 29.5 8E+02 0.017 27.1 20.8 7 387-393 206-212 (520)
481 KOG4005 Transcription factor X 29.2 2.3E+02 0.0049 28.6 7.5 30 212-241 85-114 (292)
482 COG0172 SerS Seryl-tRNA synthe 29.1 3.2E+02 0.0069 29.7 9.2 35 140-174 69-103 (429)
483 TIGR03752 conj_TIGR03752 integ 29.0 7.9E+02 0.017 27.1 12.1 32 83-114 111-142 (472)
484 PF13747 DUF4164: Domain of un 29.0 3.5E+02 0.0076 22.7 11.9 43 51-93 37-79 (89)
485 TIGR00255 conserved hypothetic 28.5 6.5E+02 0.014 25.7 13.5 78 28-105 150-237 (291)
486 TIGR01069 mutS2 MutS2 family p 28.4 9.9E+02 0.021 27.8 14.7 13 24-36 510-522 (771)
487 PF03194 LUC7: LUC7 N_terminus 28.3 6.1E+02 0.013 25.3 10.6 51 94-162 122-172 (254)
488 PRK13182 racA polar chromosome 28.3 5.2E+02 0.011 24.5 9.8 55 62-116 87-146 (175)
489 PF10359 Fmp27_WPPW: RNA pol I 27.8 2.7E+02 0.0058 30.2 8.6 66 88-174 163-228 (475)
490 PF15066 CAGE1: Cancer-associa 27.7 8.7E+02 0.019 26.9 20.3 156 20-220 364-527 (527)
491 KOG4005 Transcription factor X 27.5 2E+02 0.0044 28.9 6.8 60 206-274 86-145 (292)
492 PF13805 Pil1: Eisosome compon 27.5 6.8E+02 0.015 25.6 14.7 90 25-114 96-191 (271)
493 PF11365 DUF3166: Protein of u 27.3 3.7E+02 0.0081 23.3 7.6 81 196-276 1-91 (96)
494 PRK13710 plasmid maintenance p 27.1 70 0.0015 26.1 3.0 45 347-398 25-69 (72)
495 PF12711 Kinesin-relat_1: Kine 27.0 3.9E+02 0.0085 22.7 7.6 85 202-291 2-86 (86)
496 PRK11820 hypothetical protein; 26.8 6.9E+02 0.015 25.5 14.3 123 23-166 143-288 (288)
497 PF08647 BRE1: BRE1 E3 ubiquit 26.7 3.9E+02 0.0085 22.5 13.4 96 16-111 1-96 (96)
498 PRK04325 hypothetical protein; 26.7 3.5E+02 0.0076 22.0 8.1 53 21-73 5-57 (74)
499 PF04380 BMFP: Membrane fusoge 26.7 3.6E+02 0.0077 22.1 7.3 70 284-356 8-78 (79)
500 PF09969 DUF2203: Uncharacteri 26.7 4.6E+02 0.0099 23.3 8.9 65 46-115 6-70 (120)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.47 E-value=2.7e-09 Score=121.91 Aligned_cols=327 Identities=19% Similarity=0.227 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQ-------LETAKLSVEALRAEGMKAIEAYSS 85 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~q-------LE~ae~~Ie~le~ei~elee~~~s 85 (438)
...+..++..+...+..+...+..+...+..+..++..+...+..+..+ +..+...+..+...+..+...+..
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 755 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444444333333 333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685 86 IASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a 165 (438)
+..++......+..+...+..+..++..+...+. .. .-......+..++.++..++.++..++..+..+
T Consensus 756 ~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~----------~~-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l 824 (1164)
T TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS----------HS-RIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554444331000 00 000012234455555555555555555555555
Q ss_pred HHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhh
Q 013685 166 ETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM 245 (438)
Q Consensus 166 E~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~ 245 (438)
..+++....+.. .+...+..+..........+..+...+..+...+..++..+.++..++..+..+...+..++.
T Consensus 825 ~~~~~~l~~e~~-~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~---- 899 (1164)
T TIGR02169 825 TLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR---- 899 (1164)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 544444333222 223333333333333333333333334444444444444444444444444433333333333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc-cccC-cccchhHHHHHHHHHHHHHHHHHHh
Q 013685 246 CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR-ELDT-PNMNSNLAAEVEAARSAEKEALMKL 323 (438)
Q Consensus 246 ~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~-~~~~-~~~~~e~~~~~~~a~~~~~~~~~k~ 323 (438)
.+..++..+...+..+...+..+...+..+...+..+...+... .... ..-..++...+.... .-+.++
T Consensus 900 -----~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~~i~~l 970 (1164)
T TIGR02169 900 -----ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE----EEIRAL 970 (1164)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHH----HHHHHc
Confidence 33444444444444444444444444443333333333222110 0000 000112222222221 123455
Q ss_pred hhhH----HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685 324 GLLM----EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ 364 (438)
Q Consensus 324 ~~~~----e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq 364 (438)
|.+. ++.+.-..+-.-+..|++-...+...+..-+.+|+-+
T Consensus 971 ~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1015 (1164)
T TIGR02169 971 EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015 (1164)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555 6777777888888899999999999999988888744
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.44 E-value=2.6e-09 Score=122.09 Aligned_cols=139 Identities=15% Similarity=0.209 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE------------------TLLQLETAKLSVEALRAE 75 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE------------------~~~qLE~ae~~Ie~le~e 75 (438)
..+...+..+..+|.++...+.+++.++..+..+...+..|.+. ...++..+...+..+...
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1164)
T TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666666666666666666642 122233333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHH
Q 013685 76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEV 155 (438)
Q Consensus 76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI 155 (438)
+..+...+..+..++......+..++..+..++..+..+. +.++..+..++..++..+
T Consensus 246 l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~ 303 (1164)
T TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG----------------------EEEQLRVKEKIGELEAEI 303 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------chhhHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333322 244555666666666666
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 013685 156 GQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 156 ~~Les~Ie~aE~riqEe~~ 174 (438)
..+...+..+..++.....
T Consensus 304 ~~~~~~~~~~~~~l~~l~~ 322 (1164)
T TIGR02169 304 ASLERSIAEKERELEDAEE 322 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666555544433
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.41 E-value=5.5e-09 Score=121.58 Aligned_cols=308 Identities=25% Similarity=0.317 Sum_probs=174.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE-----------TLLQLETAKLSVEALRAEGMKAIE 81 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE-----------~~~qLE~ae~~Ie~le~ei~elee 81 (438)
-+.+...|+.+.+++.++...+.++..++..|+.+..+|..|..- +..++..+...+..+..++..+..
T Consensus 174 ~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 253 (1163)
T COG1196 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE 253 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999922 566677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
.+..+...+.....+|..+...+.++...+.... .+...++..+.++..+|..++.+
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~-----------------------~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 254 ELEELQEELEEAEKEIEELKSELEELREELEELQ-----------------------EELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777666653 35566677777888888888888
Q ss_pred HHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhc---HHHHHHHHHHHHHHHHHHHHhhc----cHHHHhhhhHHhhH
Q 013685 162 LEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLR---EVELEAELQKAKSDIEELKANLM----DKETELQGISEENE 234 (438)
Q Consensus 162 Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~r---i~Ele~eie~~~~eLeELka~l~----d~E~ELq~L~eEre 234 (438)
+..+..++++... .+......++..+...... ..++...+..+...+.++..... +.++.+..++++-.
T Consensus 311 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1163)
T COG1196 311 LEELENELEELEE----RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386 (1163)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8777777665544 2222222222222222221 33333333333333333333333 33334444444444
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHH
Q 013685 235 GLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARS 314 (438)
Q Consensus 235 ~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~ 314 (438)
.+..++. .+..++..+...++.+...+..+...+..+..++..+..++.....+ .++....+.....
T Consensus 387 ~~~~~~~---------~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 453 (1163)
T COG1196 387 ELEAELA---------EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE----LEELNEELEELEE 453 (1163)
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH
Confidence 4443333 33333333333333333333333333333333333333333321111 2233333333333
Q ss_pred HHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013685 315 AEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360 (438)
Q Consensus 315 ~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~r 360 (438)
.-.+....+..+..+...-...-.++...|...+.....+++..+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 454 QLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444455555555555555555555443
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.32 E-value=6e-08 Score=113.04 Aligned_cols=194 Identities=26% Similarity=0.366 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHH
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 258 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~ 258 (438)
.+...+..++.....+...+.+++..+..+...+.+++.....++..|..+..+...|...+. ++...+..
T Consensus 832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~---------~~~~~~~~ 902 (1163)
T COG1196 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR---------ELESELAE 902 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 455555566666667777777777778888888888888888888888888888888888888 88888888
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHhh
Q 013685 259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM----EEADKSN 334 (438)
Q Consensus 259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~----e~~~~~~ 334 (438)
+...++.+...++.+......+...+..+-..+........ ..++...+...+ ..+..||.|. ++.+...
T Consensus 903 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~le----~~i~~lg~VN~~Aiee~e~~~ 976 (1163)
T COG1196 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL--ETELEREIERLE----EEIEALGPVNLRAIEEYEEVE 976 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch--hHHHHHHHHHHH----HHHHhccCCChhHHHHHHHHH
Confidence 88888888888888877777777777666666654433211 113444443333 2256677665 6667778
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhch-----HHHHHHHHHHHHH---hccCCCCcc
Q 013685 335 RRAARMAEQLEAAQSANCEAEAELRRLKVQS-----DQWRKAAEAAASM---LSTGNNGKC 387 (438)
Q Consensus 335 ~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~-----~qwrkaae~aaa~---l~~g~~g~~ 387 (438)
.+-..+..++.....|+..+..-+..+.-.. +-|.+...-=-.| |.+|++|.+
T Consensus 977 ~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L 1037 (1163)
T COG1196 977 ERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAEL 1037 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence 8888899999988888888877665554332 3344444333333 445666753
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.32 E-value=6.1e-08 Score=109.29 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=57.8
Q ss_pred HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCc-ccch
Q 013685 225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP-NMNS 303 (438)
Q Consensus 225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~-~~~~ 303 (438)
++..+..+...|..++..-. .-.++..++..+...+.+++..+..++.....+..++..++..+...+.... ...+
T Consensus 573 ~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e 649 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 44444444444444444111 1236666777777777777777777777777888888888888887654311 2233
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013685 304 NLAAEVEAARSAEKEALMKLGLLMEEADK 332 (438)
Q Consensus 304 e~~~~~~~a~~~~~~~~~k~~~~~e~~~~ 332 (438)
.+......+.......-.+++.+......
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333443444444443333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.31 E-value=5e-08 Score=111.18 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE 57 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE 57 (438)
...++..+.....+|.++...+.++..++..+..+..+|..|.+.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~ 211 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEK 211 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999998854
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=99.21 E-value=4.9e-07 Score=102.03 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhc
Q 013685 337 AARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLS 380 (438)
Q Consensus 337 ~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~ 380 (438)
.....+++...+.-...+..++..|+....+|.++|+.+-+-+.
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~ 568 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455777778888889999999999999999998887655443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.20 E-value=1.9e-07 Score=106.55 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=25.8
Q ss_pred HHHhhhhHHHHHHhh----HHHHHHHHHHHHHHHhhHHHHHHHhhhhhchH
Q 013685 320 LMKLGLLMEEADKSN----RRAARMAEQLEAAQSANCEAEAELRRLKVQSD 366 (438)
Q Consensus 320 ~~k~~~~~e~~~~~~----~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~ 366 (438)
+..||---+|...-+ .+-.-+..|+.--..+...|+.-+..+.-.+.
T Consensus 974 i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~ 1024 (1179)
T TIGR02168 974 LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024 (1179)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554434 55556667776666666666665555544433
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.94 E-value=9.9e-06 Score=97.43 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR 94 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~ 94 (438)
.+..++..+.+.+......++++.+++.....++.+.+..++.....+..+...|..+.+.+.++.+.++.-+....+.+
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhh---hcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIK---ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~---~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
.....|..++..|..++...+. ++... ......++..|.+.++ .+....+..+.......+.
T Consensus 1125 k~r~dL~~ele~l~~~Lee~~~------------~t~~q~e~~~k~e~e~~~l~~~le---ee~~~~e~~~~~lr~~~~~ 1189 (1930)
T KOG0161|consen 1125 RQRRDLSEELEELKEELEEQGG------------TTAAQLELNKKREAEVQKLRRDLE---EETLDHEAQIEELRKKHAD 1189 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence 6666666666666666655531 00000 0011111111111111 1111111222222222222
Q ss_pred hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccH-------HHHhhhhHHhhHHHHHHhhhhh
Q 013685 172 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDK-------ETELQGISEENEGLHMQLDKNL 244 (438)
Q Consensus 172 e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~-------E~ELq~L~eEre~L~~ei~~~~ 244 (438)
.. .++...++++...|......-..++.++..+...+.-+-..-.+. |..|.+++..-+.+..-+..
T Consensus 1190 ~~----~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~-- 1263 (1930)
T KOG0161|consen 1190 SL----AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND-- 1263 (1930)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 11 355555555555555555555555555555555544333333332 23333333333333322210
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhh
Q 013685 245 MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLG 324 (438)
Q Consensus 245 ~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~ 324 (438)
-..+...+..+...+...++.....+..+-.....+..+++.++.++.. + .-++.+-..+
T Consensus 1264 l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~----------e-----~r~k~~l~~~----- 1323 (1930)
T KOG0161|consen 1264 LTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE----------E-----TREKSALENA----- 1323 (1930)
T ss_pred HHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-----HHHHHHHHHH-----
Confidence 0112234555555555555555555555555555555555555555541 1 1111111111
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 013685 325 LLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 378 (438)
Q Consensus 325 ~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~ 378 (438)
+..-......+.+|++-.+.++..|.-.+.+..+|+.|||+=.+.-..-
T Consensus 1324 -----l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~ 1372 (1930)
T KOG0161|consen 1324 -----LRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ 1372 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222344778999999999999999999999999999999988766554
No 10
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.91 E-value=4.6e-05 Score=82.35 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=61.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEA-----LRAEGMKAIEAYSSI 86 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~-----le~ei~elee~~~sl 86 (438)
+...++.+.-.+-.+|..+-..|++++.+|.....+..++....+-...++..++..+.. ...++....+.|...
T Consensus 49 ~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~ 128 (522)
T PF05701_consen 49 QLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASA 128 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 455666677777788888888888888888888877777766665444444444443333 445555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kL 107 (438)
..+|+..+.++..+..++..+
T Consensus 129 ~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 129 VAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555544
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.85 E-value=4.8e-05 Score=91.70 Aligned_cols=323 Identities=22% Similarity=0.255 Sum_probs=181.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
.+..++..+..+......++..+.++..++.+..+.-........+....+..++..|+.++..+.+++.++......+.
T Consensus 888 ~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~ 967 (1930)
T KOG0161|consen 888 NLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLK 967 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666777777777776666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 92 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 92 e~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
.+..+|..+++.+++|..+-..++.. -....+.+.....++.++..-...|+..|++.+..+..
T Consensus 968 ~l~~e~~~~~e~~~kL~kekk~lEe~----------------~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 968 NLEEEINSLDENISKLSKEKKELEER----------------IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666543333310 01112334444455555555555555555555555544
Q ss_pred hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhh
Q 013685 172 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQ 251 (438)
Q Consensus 172 e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~e 251 (438)
... ..-.++..+-.+......+...+..++...++|...++.++.||..+..+.+.+...+.+- ...-.+
T Consensus 1032 e~~--------~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l--~k~i~e 1101 (1930)
T KOG0161|consen 1032 EKR--------IRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQL--QKQIKE 1101 (1930)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHH
Confidence 333 2222333333344444555555666666677777777777777777777777766666511 111124
Q ss_pred hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHH----------HHHHH
Q 013685 252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAE----------KEALM 321 (438)
Q Consensus 252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~----------~~~~~ 321 (438)
+...+..+..+++.-++...-.+..+..|..+++.|+.++..- .....+.++.-+..+ ++..+
T Consensus 1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~-------~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ-------GGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555666666666655533 112222222222222 22222
Q ss_pred HhhhhHHHH-HHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHH
Q 013685 322 KLGLLMEEA-DKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQ 367 (438)
Q Consensus 322 k~~~~~e~~-~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~q 367 (438)
-.....+.+ .+.+...+.+..|++--+..+..++-+-+.|.-..++
T Consensus 1175 ~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333 2336778889999999888888887777766555444
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.83 E-value=0.00012 Score=82.56 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 71 ALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 71 ~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.+...+.++......+..++..+..++..+...+..|+..+..+.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666667777777777777777777777666555
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.81 E-value=0.00027 Score=79.50 Aligned_cols=298 Identities=18% Similarity=0.237 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALAR-------------ETLLQLETAKLSVEALRAEGMKA 79 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~e-------------E~~~qLE~ae~~Ie~le~ei~el 79 (438)
-+.+..++..++..+..+...|+.++..+....+++...+..+. ....++..++..+..++..+...
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777778888888888888888888777777542 25667778888888888777777
Q ss_pred HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccccc
Q 013685 80 IEAYS--------------------SIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM 139 (438)
Q Consensus 80 ee~~~--------------------sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~ 139 (438)
...+. .+..-|+...+.|.+++.-|..++.+|..+....+-.+. + .+.....-....+
T Consensus 203 e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~-~-r~~~~k~le~~~s 280 (775)
T PF10174_consen 203 EKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA-D-RDRLDKQLEVYKS 280 (775)
T ss_pred HHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-c-hHHHHHHHHHHHh
Confidence 77663 345567778889999999999999999999742111111 0 0000001111233
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
....++..++.++.++++-.+-|..+-+++........ +.+.-|+-+..--....++..-|...++.+...|++....+
T Consensus 281 ~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~-d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 281 HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDS-DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44445555666666666666666655566554433222 44666666666666666777777777777777777777777
Q ss_pred ccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCc
Q 013685 220 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 299 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~ 299 (438)
-.+..-+..+.++...+..+|. .++..++.....|..|..++..++..+..=..++..++.-+.. .++..
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~---------~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~ 429 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIE---------DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSS 429 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccc
Confidence 7777778888888888888887 7888888888888888888777777776555555566666654 44433
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhh
Q 013685 300 NMNSNLAAEVEAARSAEKEALMKLG 324 (438)
Q Consensus 300 ~~~~e~~~~~~~a~~~~~~~~~k~~ 324 (438)
+ .+.+...++.|-..-.-...+|.
T Consensus 430 ~-~~~~~~~lEea~~eker~~e~l~ 453 (775)
T PF10174_consen 430 N-EDEALETLEEALREKERLQERLE 453 (775)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555666666554444444443
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.78 E-value=8.4e-05 Score=83.52 Aligned_cols=331 Identities=21% Similarity=0.277 Sum_probs=176.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 7 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 7 ~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
.+.-+|++.+.++++.|+-+|++....+.....++..+..+.+.....++.+...++.....|..|...|..+++.+..-
T Consensus 332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777777777766666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 87 ASELERSRTRIN-------------LLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 87 ~~ELee~~~eI~-------------~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
...|+..+.++. .|+.-+.+.+.-+..+. ..-...-.+...+++..+.
T Consensus 412 d~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~-------------------e~r~~~e~e~~Eele~~~~ 472 (775)
T PF10174_consen 412 DRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE-------------------EQRERAEKERQEELETYQK 472 (775)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 665655555555 12222222222222221 0111122455667777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhh----
Q 013685 154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI---- 229 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L---- 229 (438)
++..++..+..+..++.+-.+ .+-..-+.+...-+.. ......|+.+.-.++..+...-+++..|..+
T Consensus 473 e~~~lk~~~~~LQ~eLsEk~~----~l~~~kee~s~l~s~~----~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~ 544 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSEKEL----QLEDAKEEASKLASSQ----EKKDSEIERLEIELEKKREKHEKLEKQLEKLRANA 544 (775)
T ss_pred HHHHHHHHHHHHhhhhHHHHH----HHHHhhhHHHHHhhcc----chhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence 777777777777777777665 3333333332222211 1122223444444444444444444444332
Q ss_pred --HHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHH
Q 013685 230 --SEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAA 307 (438)
Q Consensus 230 --~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~ 307 (438)
......|...+. ..+.+....+..|++|-..|-..+........+|..|.+++.+...+..+...-
T Consensus 545 e~~~r~~~Le~ev~---------~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~--- 612 (775)
T PF10174_consen 545 ELRDRIQQLEQEVT---------RYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQET--- 612 (775)
T ss_pred hhcchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhh---
Confidence 222222332222 455566677778888888888888888888888888888876655543321111
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHh-----hHHHHHHHHH-HHHH-------HHhhHHHHHHHhhhhhchHHHHHHHHH
Q 013685 308 EVEAARSAEKEALMKLGLLMEEADKS-----NRRAARMAEQ-LEAA-------QSANCEAEAELRRLKVQSDQWRKAAEA 374 (438)
Q Consensus 308 ~~~~a~~~~~~~~~k~~~~~e~~~~~-----~~~~~~~~e~-l~a~-------~~a~~~~eae~~rl~vq~~qwrkaae~ 374 (438)
.++-+.. ...-+-..+.+++.+. ..+..++..+ +.+. +.-...|.+.|.++|+..|+-+-=..-
T Consensus 613 -~~~~k~~--~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~s 689 (775)
T PF10174_consen 613 -VEATKIE--ENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLES 689 (775)
T ss_pred -hhhhhhH--HHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1112223344555442 1222222222 2222 223466777788888777777743333
Q ss_pred HHHHh
Q 013685 375 AASML 379 (438)
Q Consensus 375 aaa~l 379 (438)
.--+|
T Consensus 690 sq~~L 694 (775)
T PF10174_consen 690 SQQSL 694 (775)
T ss_pred HHHHH
Confidence 33344
No 15
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.74 E-value=0.00018 Score=77.91 Aligned_cols=47 Identities=28% Similarity=0.397 Sum_probs=30.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
......+...|.....+|++.+..+-....++..|+...+.|+.+|.
T Consensus 273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777777777766666666666666666666665
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=7.9e-05 Score=88.32 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
...++..|..+...+..+...+.++..+|..+..+...+..++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444555555555555555555555555555555544444444
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=0.00021 Score=84.76 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHchhhH--HHHHHHHHHHHHHHHHHHh
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDK--ETELQNISEENEMLKLEIS 292 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~l--e~~l~~L~eEieeLKsEI~ 292 (438)
.++.++..+......+.-+|..+ ...+..+..+|..|..+++
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555 5555555555555555555
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.70 E-value=1.1e-05 Score=78.57 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 013685 152 KSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 152 k~EI~~Les~Ie~aE~riq 170 (438)
...+.......+.++.+|.
T Consensus 98 E~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.64 E-value=0.0001 Score=79.04 Aligned_cols=173 Identities=17% Similarity=0.254 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccCCCCCCCcchhhhh
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR-NLSQNCSGDYDLGQKIKE 134 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~-~~~~~~~~~~~~~~~~~~ 134 (438)
+.+..+...++..+..++..+..+...+..+...|..+...+..++..+..++..+.-... ..-..|+.++.+.
T Consensus 223 ~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~----- 297 (562)
T PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG----- 297 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-----
Confidence 3344444444444445555554444444444455555666666666666666666554431 0112334443221
Q ss_pred cccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH
Q 013685 135 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE 214 (438)
Q Consensus 135 ~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE 214 (438)
.+.+..|+..+..++.++..+...+..++...+. . .++...+..+.+........+..+...+..++.+|+.
T Consensus 298 ---~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~----~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 ---PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-F----NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655444432 1 2445555566666666666666677777777777777
Q ss_pred HHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 215 LKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 215 Lka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
|.....+.+.+|..+..+...+..++.
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~~~~~~ 396 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKIVKTKS 396 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776666665
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.61 E-value=0.00011 Score=73.39 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
....|..++.++.++..+.+++...++.+...++.++..++........++..+..+...++........|+..|..|..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 34555566666666666666666666555555555555555555555555555555555555555555555555555555
Q ss_pred HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHH-hhHHHH-----HHHHHHHHHHHHhhhhhhhhcHHHHHHH
Q 013685 110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS-SLKSEV-----GQLRSALEIAETKLNEGQIQSTVKIKSA 183 (438)
Q Consensus 110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie-~lk~EI-----~~Les~Ie~aE~riqEe~~e~~~elr~a 183 (438)
+|.-+.. .-..++..|...+. ..-.++ ..|...|...-..|...-.....++...
T Consensus 132 El~fl~~-------------------~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~ 192 (312)
T PF00038_consen 132 ELEFLKQ-------------------NHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEW 192 (312)
T ss_dssp HHHHHHH-------------------HHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-------------------hhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhh
Confidence 4444331 00111222222110 000000 1122222222222221111000111111
Q ss_pred HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
......++..........+...+.++.+++..+..+.++|..|...+..|...|.
T Consensus 193 ---y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 193 ---YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 1222334444445566666777777777777777777777777777777777776
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.58 E-value=7e-05 Score=73.01 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=19.6
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.+.++...+..+..++.+.+.+++.++.++.++..
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 34445555556666666666666666555555444
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=0.004 Score=71.10 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
+..++.+|..+..+|..|+..+..++.++.
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444433
No 23
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.48 E-value=0.00096 Score=67.21 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=54.3
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhh
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD 272 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~ 272 (438)
.....+.++.+++..++....+++..+..+-.+.|++..+--.+-.++. +++.+.+.+-..+-.+......
T Consensus 155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~D---------e~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD---------ELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555556666666666666666666666666555555555555554 6666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 013685 273 KETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 273 le~~l~~L~eEieeLKsEI~~~ 294 (438)
+...+..+..+|.++...|..+
T Consensus 226 ~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 226 LHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555555533
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.46 E-value=0.00072 Score=73.17 Aligned_cols=111 Identities=25% Similarity=0.296 Sum_probs=75.6
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 013685 186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED 265 (438)
Q Consensus 186 ~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~ 265 (438)
.+...+....+....|...++..+..|..|+..+-.++.-|++=+.+|..|..+|.+.-+|++ --+.+.+..+.+
T Consensus 347 ~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~-----vqlsE~~rel~E 421 (546)
T PF07888_consen 347 ELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR-----VQLSENRRELQE 421 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHH
Confidence 334444444444455566667777888899999999999999999999999999984444332 255566666666
Q ss_pred HHHchhhHHHHHHHHHHHHHHHHHHHhhccccCccc
Q 013685 266 LKANLMDKETELQNISEENEMLKLEISKRELDTPNM 301 (438)
Q Consensus 266 Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~ 301 (438)
+++.|--...+-..+..+..+|..-|...+...+++
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666666667777777777777776666544443
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=98.44 E-value=0.0036 Score=71.43 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=8.4
Q ss_pred chHHHHHHHHhhHHHHHHH
Q 013685 140 ESKHLEEELSSLKSEVGQL 158 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~L 158 (438)
++.+|..++..++.++..+
T Consensus 484 ~i~~l~~~~~~l~~~~~~~ 502 (895)
T PRK01156 484 KIREIEIEVKDIDEKIVDL 502 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.44 E-value=0.0011 Score=73.09 Aligned_cols=274 Identities=24% Similarity=0.286 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 013685 45 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG 124 (438)
Q Consensus 45 ~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~ 124 (438)
.+.+.+++...+.....|. .+...+...+..+-+....+..+......+|..|+..|.+|...+..... +.|+.+
T Consensus 3 ~e~l~qlq~Erd~ya~~lk---~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~pa~ 77 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLK---EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEPPAG 77 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--cccccc
Confidence 3444555555555555444 45556777888888888999999999999999999999999988887663 333333
Q ss_pred CCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHH
Q 013685 125 DYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAE 204 (438)
Q Consensus 125 ~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~e 204 (438)
+. ..-..|..++..++.+++.|...+..--.. + +.+.....+...++.+++..
T Consensus 78 ps------------e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~-n--------------e~Ls~L~~EqEerL~ELE~~ 130 (617)
T PF15070_consen 78 PS------------EVEQQLQAEAEHLRKELESLEEQLQAQVEN-N--------------EQLSRLNQEQEERLAELEEE 130 (617)
T ss_pred ch------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHH
Confidence 21 111345556666666665555555432211 1 11222222333333333333
Q ss_pred HHHHHHHH------------------------HHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 013685 205 LQKAKSDI------------------------EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA 260 (438)
Q Consensus 205 ie~~~~eL------------------------eELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~ 260 (438)
+..+.... .+||..+.++..-+-.|..++-.|.+.+.-..-..+ +|...+..+.
T Consensus 131 le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~k--eL~~kl~~l~ 208 (617)
T PF15070_consen 131 LERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKK--ELQKKLGELQ 208 (617)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 33333332 466777777777777788888777777663333444 8888889999
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhh----hhHHHHH--Hhh
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLG----LLMEEAD--KSN 334 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~----~~~e~~~--~~~ 334 (438)
..+..++..+..+...+.+|..+.+.+-..+..|.+.. ..-+.+.+++-|-- +++..+- .+.
T Consensus 209 ~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~------------q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q 276 (617)
T PF15070_consen 209 EKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY------------QQLASEKEELHKQLLQQTQLMDRLQHEESQ 276 (617)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999886542 12234455555432 1222221 111
Q ss_pred HHHH---------HHHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685 335 RRAA---------RMAEQLEAAQSANCEAEAELRRLKVQ 364 (438)
Q Consensus 335 ~~~~---------~~~e~l~a~~~a~~~~eae~~rl~vq 364 (438)
.++. .+.++|+|+-.-|..|.+.|.-+..-
T Consensus 277 ~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 277 GKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 1111 44578888888888888888765443
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.39 E-value=0.00022 Score=77.10 Aligned_cols=253 Identities=17% Similarity=0.217 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
.....++..+..+|..+...+.+++.++.+..+.+..+...+......|-.+++++..+..++..++++...+..+...+
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH----HHHHHHHHHHHHHH-Hh
Q 013685 94 RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK----SEVGQLRSALEIAE-TK 168 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk----~EI~~Les~Ie~aE-~r 168 (438)
...|..+...+..=-. --- .....+..|..+|.-++ .+|.++......-- ..
T Consensus 182 ~~~l~~~r~~ld~Etl---lr~--------------------d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~ 238 (546)
T KOG0977|consen 182 REELARARKQLDDETL---LRV--------------------DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTAD 238 (546)
T ss_pred HHHHHHHHHHHHHHHH---HHH--------------------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence 5555444332221110 000 00112223333333333 44444333332111 00
Q ss_pred h-----hhhhhhcHHHHHHHHHHHHHH-----HhhhhhcHHHHH--------------HHHHHHHHHHHHHHHhhccHHH
Q 013685 169 L-----NEGQIQSTVKIKSAFEQLEQI-----KHQSGLREVELE--------------AELQKAKSDIEELKANLMDKET 224 (438)
Q Consensus 169 i-----qEe~~e~~~elr~a~E~le~~-----K~e~~~ri~Ele--------------~eie~~~~eLeELka~l~d~E~ 224 (438)
. ++++. .-.+|+..|+..-+. -.-+..+|.+.. .++..++..|..|++.+.++++
T Consensus 239 ~r~~F~~eL~~-Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~ 317 (546)
T KOG0977|consen 239 NREYFKNELAL-AIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES 317 (546)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Confidence 0 11111 113555555554222 123555565555 8999999999999999999999
Q ss_pred HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
....|-...+.|+..+..... --...|...+..|.+++-+...+-.+++.|..=.-.|..||..|-
T Consensus 318 ~n~~L~~~I~dL~~ql~e~~r-----~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YR 383 (546)
T KOG0977|consen 318 RNSALEKRIEDLEYQLDEDQR-----SFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYR 383 (546)
T ss_pred cChhHHHHHHHHHhhhhhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHH
Confidence 999999999999988872211 345567777777888888878888888888777777888887765
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.39 E-value=0.0046 Score=74.34 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
.-..+...|.....++.++...+.++..++..|+.+...+..|..... +.......+..+...+..+...+......+.
T Consensus 294 rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLe 372 (1486)
T PRK04863 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVE 372 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999999999999999999999998875433 1222334444444444555544444445554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 013685 92 RSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 92 e~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
.....+..++.++..++..+..+
T Consensus 373 eleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 29
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.38 E-value=0.00032 Score=75.87 Aligned_cols=266 Identities=18% Similarity=0.221 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE--------TLLQLETAKLSVEALRAEGMKAIEAYSSIASE 89 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE--------~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E 89 (438)
.||+.|-.+|......|--|..+-..|..++.....-... ...++-++...|+....+..+++-.+..+..+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4677788888888888888888888888777776665521 45566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 90 LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
++..+..+...+..+.....++....... |.. .++-...-..+.-|..++..|+.++.+|...|..+...+
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l---~~l------eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRL---SEL------EAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhh---hhh------hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 66665555555444443333333222100 000 001111122333334444444444444444444444444
Q ss_pred hhhhhh---cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH--HHH----HHHHHhhccHHHHhhhhHHhhHH-H---
Q 013685 170 NEGQIQ---STVKIKSAFEQLEQIKHQSGLREVELEAELQKAK--SDI----EELKANLMDKETELQGISEENEG-L--- 236 (438)
Q Consensus 170 qEe~~e---~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~--~eL----eELka~l~d~E~ELq~L~eEre~-L--- 236 (438)
..+-+- .+...+...+.|.-.+..+.+.|.+.-.....-- ..- .+|...+.|+-.+.......+.. +
T Consensus 193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~ 272 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESW 272 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333221 1136666777777777777777666554433221 111 23333444443333333333222 1
Q ss_pred -HHHhhhh-----hhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 237 -HMQLDKN-----LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 237 -~~ei~~~-----~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+.+|..- .-+.-..-++.++..++..|..|+++|.+++.+-..|...|+.|+.++.
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 1122100 0011122366889999999999999999999999999999999999887
No 30
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.0031 Score=75.81 Aligned_cols=265 Identities=21% Similarity=0.249 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685 50 QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG 129 (438)
Q Consensus 50 ~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~ 129 (438)
.+.......-.+|+.+...|+.+..+...+...+..+...++.+..++..|+..|........++.. +..
T Consensus 827 ~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~-------~~~--- 896 (1822)
T KOG4674|consen 827 DLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS-------KSS--- 896 (1822)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc-------cch---
Confidence 3333334456666666677777766666666666666666666666666666666666666555552 100
Q ss_pred hhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685 130 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK 209 (438)
Q Consensus 130 ~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~ 209 (438)
..+...+-..+.-...++..|+..+..+...|...+. .....=..+...+..+.+--.++++.|+...
T Consensus 897 --------~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe----~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~ 964 (1822)
T KOG4674|consen 897 --------NEDATILEDTLRKELEEITDLKEELTDALSQIREYQE----EYSSLEQSLESVKSELDETRLELEAKIESLH 964 (1822)
T ss_pred --------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111222222444444555556666666666555544 3334444555666666666666677777777
Q ss_pred HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH--
Q 013685 210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML-- 287 (438)
Q Consensus 210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL-- 287 (438)
..+-.++.+++++..++..|+++-. ..+. .+-.+=..+..++..++..+..+..........+..+...+...
T Consensus 965 ~k~tslE~~ls~L~~~~~~l~~e~~---~~~k--~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~ 1039 (1822)
T KOG4674|consen 965 KKITSLEEELSELEKEIENLREELE---LSTK--GKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETE 1039 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccc--chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666666654431 1111 00000013334444444444444333333333333322222222
Q ss_pred --HHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 013685 288 --KLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEA 356 (438)
Q Consensus 288 --KsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~ea 356 (438)
+.-...|+.. .+.-| +...+|+.+.+++.+.+...-.+..-.+..+.+..+.++
T Consensus 1040 ~~~~a~~~Ye~e----------l~~ha-----~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~ 1095 (1822)
T KOG4674|consen 1040 QLRKAQSKYESE----------LVQHA-----DLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQER 1095 (1822)
T ss_pred HHHHHHHHHHHH----------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhccc
Confidence 2222223322 11111 345666777777777776666666666666666554443
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.0038 Score=71.08 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=106.2
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-------------HHHHHHHHHHHHHHhhhhhcHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-------------VKIKSAFEQLEQIKHQSGLREVELEAE 204 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-------------~elr~a~E~le~~K~e~~~ri~Ele~e 204 (438)
+.+.+.++.+|..++..+..-...++..+..++-++.+.+ .+....+..+..........+...+..
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 4556666666666666666666666666666655544333 122222333333333444445555555
Q ss_pred HHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685 205 LQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN 284 (438)
Q Consensus 205 ie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi 284 (438)
.++...+|...++++++..+++.++.-.-+.+..++. ...-++.++..++..+...-.+...++..+..++
T Consensus 866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~---------~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS---------DGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh---------cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 5666667777777777777777777777777777766 5556666667777777777777777777776666
Q ss_pred HHHHHHHhhcccc----------------------------CcccchhHHHHHHHHHHHHHHHHHHhhhhH
Q 013685 285 EMLKLEISKRELD----------------------------TPNMNSNLAAEVEAARSAEKEALMKLGLLM 327 (438)
Q Consensus 285 eeLKsEI~~~~~~----------------------------~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~ 327 (438)
+=+-.+...+... ...+|.-++.+++.+...+-+.-.|-..+.
T Consensus 937 ~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie 1007 (1174)
T KOG0933|consen 937 EWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIE 1007 (1174)
T ss_pred cchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444433221 124566666666666655555544444433
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=0.0071 Score=69.88 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=38.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhh
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD 272 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~ 272 (438)
.+.++=.-+.+++.+.+.+++.+...+....++++-...+-+.|..... .+...+..+...+......+..
T Consensus 469 ~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~---------~~~~~~e~lk~~L~~~~~~~~e 539 (1293)
T KOG0996|consen 469 SLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHE---------TGLKKVEELKGKLLASSESLKE 539 (1293)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444433333332 3333333333333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013685 273 KETELQNISEENEMLKLEIS 292 (438)
Q Consensus 273 le~~l~~L~eEieeLKsEI~ 292 (438)
....+..+...+..++.++.
T Consensus 540 ~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 540 KKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 44444444444445555554
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=0.00041 Score=74.43 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
.+..++..++.+|..|.....++..++..+..++..+..++..
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666665553
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.0011 Score=76.24 Aligned_cols=219 Identities=18% Similarity=0.267 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 37 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 37 lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.+..+.++...-......+..+...++.++++|+..+..+.+++..-+..+.++.+...+|..|+......+..+...
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~-- 466 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEI-- 466 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333333333333333333333555555555555555555555555555544445555555544444444444333322
Q ss_pred ccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhh
Q 013685 117 NLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGL 196 (438)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ 196 (438)
...|+.+-.-++.++..++..++-...++++..-+.. -..+.+..+..+......
T Consensus 467 ------------------------~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~-vaesel~~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 467 ------------------------LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD-VAESELDILLSRHETGLK 521 (1293)
T ss_pred ------------------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 2333344444444444444444444444444333222 223444555566667777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685 197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 276 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~ 276 (438)
+..++...|......+.+.+..+-++..+|..++.+......++. .++.+...+...+..++.+++.....
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~---------~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP---------KLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888888888888887777777776 44444444444444444444444455
Q ss_pred HHHHHHHHHHHHHHH
Q 013685 277 LQNISEENEMLKLEI 291 (438)
Q Consensus 277 l~~L~eEieeLKsEI 291 (438)
++.....+..|.+-.
T Consensus 593 ~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 593 LSSSRSRNKVLDALM 607 (1293)
T ss_pred HHhhhhhhHHHHHHH
Confidence 555555555555544
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.24 E-value=0.0074 Score=60.41 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA--------RETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~--------eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
+++.|-.++......|-.+..+-..|...+.....-. .-...++..++..|+.+..+...++-.+..+..++
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 4555566666666666666666666665555554442 33667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 91 ERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 91 ee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+.++.+..........++.+|..+.
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7777777666666666666666655
No 36
>PRK11637 AmiB activator; Provisional
Probab=98.23 E-value=0.00068 Score=71.31 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 36 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 36 elr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
.++.++.++..++.+....+..+..++..+...|..+...+..+...++.+..+|..+..+|..++..|..++.+|.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444333
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.22 E-value=0.0026 Score=72.93 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHH
Q 013685 258 KLAQAVEDLKANLMDKETELQNISEENEMLKL 289 (438)
Q Consensus 258 ~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKs 289 (438)
........++..+.++....+..++++..|+.
T Consensus 433 ~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 433 EEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555556666666666666654
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.21 E-value=0.016 Score=65.59 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 33 LMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 33 ~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
.+-++..+|.+.+.+..+|+...++....+.+....|+.+-=+-+=+++...++..++.-+..+|++|+-+++=|.++++
T Consensus 277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555666666667777777766666777788889999999999999999999999999999
Q ss_pred hcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh
Q 013685 113 NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH 192 (438)
Q Consensus 113 ~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~ 192 (438)
+.+... . ....-+..+|...=..+|.-+-+||+-.-...-.++-...+.. ..++.+..+.+.+.
T Consensus 357 ekG~~~---~------------~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE-~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 357 EKGSDG---Q------------AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELE-KKNSELEELRRQKE 420 (1243)
T ss_pred hcCCCC---c------------ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 998411 0 1124467777777788888888888766655555554444333 66777777777777
Q ss_pred hhhhcHHHHHHHHHHHHHHHH
Q 013685 193 QSGLREVELEAELQKAKSDIE 213 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLe 213 (438)
-++.++...+..|..++..+.
T Consensus 421 ~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 421 RLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776664
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.16 E-value=0.021 Score=62.19 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 17 HLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 96 (438)
Q Consensus 17 ~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e 96 (438)
...++....+..++......++.++..+...+......+.......+.+......+......+..++..+..+..+...+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444333333333333333444444444444555555555555666666
Q ss_pred HHHHHHHHHHHHHHh
Q 013685 97 INLLEGLVSKLEADT 111 (438)
Q Consensus 97 I~~LE~ei~kLe~eI 111 (438)
|..|+.+|..+....
T Consensus 222 i~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 222 IRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555544
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.10 E-value=0.052 Score=65.79 Aligned_cols=229 Identities=19% Similarity=0.187 Sum_probs=116.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIA---- 87 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~---- 87 (438)
...++..++.++..-+..+...+..+++.+.........++..++....+..+.-.++..++.+..++.+.+..+.
T Consensus 1005 e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~ 1084 (1822)
T KOG4674|consen 1005 EISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRE 1084 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445555555555555666666666666665555555555655555555555555555555555555555444443
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcch-----------hhhhc
Q 013685 88 ---------------------SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQ-----------KIKEN 135 (438)
Q Consensus 88 ---------------------~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~-----------~~~~~ 135 (438)
.++.....+|..|+..-+-|...|+.+...++- -+++.+..+ -.+-.
T Consensus 1085 ~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~-~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1085 SRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV-SNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHhHHH
Confidence 345555566666666666666666666642110 022222222 02333
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-----HHHHHHHH----HHH----------HHHhhhhh
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-----VKIKSAFE----QLE----------QIKHQSGL 196 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-----~elr~a~E----~le----------~~K~e~~~ 196 (438)
..+.++.-++.+...++..+..+...|+++..-++......+ .+-++.|- .+. .-...-..
T Consensus 1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~ 1243 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLE 1243 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555556666666666666666665554444331 11111111 111 11112334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
++.++..+|.+++.+|.-|.-.+..+.++++....+...|+++..
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~ 1288 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEND 1288 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555543
No 41
>PRK11637 AmiB activator; Provisional
Probab=98.09 E-value=0.0037 Score=65.79 Aligned_cols=91 Identities=7% Similarity=0.052 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 24 KGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL 103 (438)
Q Consensus 24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e 103 (438)
..+|..+...|..+...+.++..........+..+..++..+...|..+..++..+...+..+..++...+.+|..+...
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhc
Q 013685 104 VSKLEADTSNA 114 (438)
Q Consensus 104 i~kLe~eI~~~ 114 (438)
+...-..+-..
T Consensus 126 l~~rlra~Y~~ 136 (428)
T PRK11637 126 LAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHc
Confidence 55554444433
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.023 Score=65.03 Aligned_cols=138 Identities=19% Similarity=0.235 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLM-ENMKNQLRESKESETQAQALA------RE-----TLLQLETAKLSVEALRAEGMKAIEA 82 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~I-eelr~qL~dl~~e~~~A~~~~------eE-----~~~qLE~ae~~Ie~le~ei~elee~ 82 (438)
.|+.=++--...+.++..++ +++-=++..|+.++++.+.|. +. +.-+.=.+......+...+.++...
T Consensus 180 ~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~ 259 (1174)
T KOG0933|consen 180 AAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDK 259 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666664444 456778899999999999998 22 2334334566777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
+..+...+.+...+|.+++..|.+|+.....-- +.++.-|...+.++..+|-+..+.+
T Consensus 260 i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em----------------------~~~~~~L~~~~~~~~~~~tr~~t~l 317 (1174)
T KOG0933|consen 260 IAKLDESLGKTDKEIESLEKEIKEIEQQRDAEM----------------------GGEVKALEDKLDSLQNEITREETSL 317 (1174)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----------------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654443 4556778889999999999999999
Q ss_pred HHHHHhhhhhhh
Q 013685 163 EIAETKLNEGQI 174 (438)
Q Consensus 163 e~aE~riqEe~~ 174 (438)
.....-|+.+..
T Consensus 318 ~~~~~tl~~e~~ 329 (1174)
T KOG0933|consen 318 NLKKETLNGEEE 329 (1174)
T ss_pred HHHHHHHhhhHH
Confidence 888888776544
No 43
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.06 E-value=8.2e-07 Score=100.83 Aligned_cols=305 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL 99 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~ 99 (438)
...+...|..-+..|..+..++++-...+.+++..+-++..++..++..++.=+....+.+..+..+..+|+.+..++..
T Consensus 6 ~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee 85 (859)
T PF01576_consen 6 KEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEE 85 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777777777777777777777777777777777776667777777777766666665544
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH----HHHHHHHHHHHHHHHhhhhhhhh
Q 013685 100 LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK----SEVGQLRSALEIAETKLNEGQIQ 175 (438)
Q Consensus 100 LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk----~EI~~Les~Ie~aE~riqEe~~e 175 (438)
..+.-. .+.++... .+.++..|+..+++.. ..|..|+..-...-..+++...
T Consensus 86 ~~~~t~-aq~E~~kk----------------------rE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle- 141 (859)
T PF01576_consen 86 AGGATQ-AQIELNKK----------------------REAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLE- 141 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhCcHH-hhHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 332211 11111111 1344444444443211 2223333222222222222211
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHH
Q 013685 176 STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNND 255 (438)
Q Consensus 176 ~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~e 255 (438)
.++.....++..++.+...+.++...|..+.............++..|..+....+.....+. ++...
T Consensus 142 ---~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~---------el~~~ 209 (859)
T PF01576_consen 142 ---QLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN---------ELTEQ 209 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence 333333444444444444455555544444444444444455555555555555555554444 55555
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhH
Q 013685 256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNR 335 (438)
Q Consensus 256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~ 335 (438)
+..+...+..|...|.+.+..+..+......|.+++.+.... ++.-..+-.-...++..+..+
T Consensus 210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~-----------leeEtr~k~~L~~~l~~le~e------ 272 (859)
T PF01576_consen 210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQ-----------LEEETRAKQALEKQLRQLEHE------ 272 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHhHhhhhhhhHHHHHHHHHH------
Confidence 666666666666666666666666655555555555532211 111111111222334443333
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 013685 336 RAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 378 (438)
Q Consensus 336 ~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~ 378 (438)
...|.++|+--+.++..++..+.++-.+..+||+-.+.-+..
T Consensus 273 -~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 273 -LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp -------------------------------------------
T ss_pred -HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 347889999999999999999999999999999998876665
No 44
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.99 E-value=0.025 Score=57.26 Aligned_cols=86 Identities=20% Similarity=0.371 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHH
Q 013685 201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 280 (438)
Q Consensus 201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L 280 (438)
....+..+.+++.+++....++-.+++.|.++-.....++. .+-.+.++++...+.+-..+.........+
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~---------k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI---------KLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444444444444444444444444443 444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhcc
Q 013685 281 SEENEMLKLEISKRE 295 (438)
Q Consensus 281 ~eEieeLKsEI~~~~ 295 (438)
..++..+..+|.++.
T Consensus 227 ~ee~~~~~~elre~~ 241 (294)
T COG1340 227 HEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.95 E-value=0.05 Score=64.59 Aligned_cols=94 Identities=15% Similarity=0.248 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 013685 276 ELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAE 355 (438)
Q Consensus 276 ~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~e 355 (438)
....+..++..++.++. ....+++....+..+..+-.. ..+.+.........+..++..++..+...+
T Consensus 443 ~~~~~~~~l~~l~~~~~-----~~~~~~e~~~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 510 (1201)
T PF12128_consen 443 QREQLKSELAELKQQLK-----NPQYTEEEKEQLEQADKRLEQ-------AQEQQNQAQQAVEELQAEEQELRKERDQAE 510 (1201)
T ss_pred HHHHHHHHHHHHHHHHh-----CcCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555443 233455555555554433222 233344444445556666777777778888
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHhcc
Q 013685 356 AELRRLKVQSDQWRKAAEAAASMLST 381 (438)
Q Consensus 356 ae~~rl~vq~~qwrkaae~aaa~l~~ 381 (438)
..|+.++-+-.+-+-.-...-+.|..
T Consensus 511 ~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 511 EELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88888888888877777777888864
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.92 E-value=0.0099 Score=68.39 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhc
Q 013685 366 DQWRKAAEAAASMLS 380 (438)
Q Consensus 366 ~qwrkaae~aaa~l~ 380 (438)
+-|..|-+-+-.=|.
T Consensus 508 ~KWa~aIE~~L~n~l 522 (1074)
T KOG0250|consen 508 PKWALAIERCLGNLL 522 (1074)
T ss_pred cHHHHHHHHHHHHhh
Confidence 479999987754443
No 47
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.88 E-value=0.043 Score=60.59 Aligned_cols=264 Identities=13% Similarity=0.161 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD 137 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~ 137 (438)
...++..+...|..+...+..+...+..+...+.++..++.........++....-.... .+-+.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~---------------~~lL~ 390 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT---------------VELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhc
Confidence 344555555555555555555555555555555555555555555555555544433310 00111
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
+.+- -|..|..=|..-..++..+..+-+.... -+-..|..+..............-.+|+.++..+.++..
T Consensus 391 d~e~-----ni~kL~~~v~~s~~rl~~L~~qWe~~R~----pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~ 461 (594)
T PF05667_consen 391 DAEE-----NIAKLQALVEASEQRLVELAQQWEKHRA----PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEE 461 (594)
T ss_pred CcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1122233333333333333333333333 333334444444444444444455778888999999999
Q ss_pred hhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685 218 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297 (438)
Q Consensus 218 ~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~ 297 (438)
.+..++.....|..+.+.+...+....=+.+..+...-+.+++.+|.++=..--.+..++..+...+.-==..+.+.- .
T Consensus 462 e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli-f 540 (594)
T PF05667_consen 462 EIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI-F 540 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H
Confidence 999999999999999999988887777788999999999999999998876655555555555444332111111000 0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 013685 298 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA 346 (438)
Q Consensus 298 ~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a 346 (438)
..-..|+++..+=-==+.-++-...|-...++...-.|....+-+|++.
T Consensus 541 rdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 541 RDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDT 589 (594)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111333332222222333344444444445555555555555555554
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.86 E-value=0.073 Score=58.37 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------H--------HHHHHHHHHHHHHHHH
Q 013685 9 QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESE-TQAQALA-------R--------ETLLQLETAKLSVEAL 72 (438)
Q Consensus 9 ~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~-~~A~~~~-------e--------E~~~qLE~ae~~Ie~l 72 (438)
..+.-..|..-+..++..+..+...++.+=.=+.+|.... .+..... . .+..++..++..|...
T Consensus 189 ~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 189 ESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence 3444455555566666666666555555544444444443 2222111 1 1455666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 73 RAEGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 73 e~ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
...+..+. +..+...++.+..+|+.|-+.+.
T Consensus 269 ~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 269 LALLEELD--LDEAEEKNEEIQERIDQLYDILE 299 (569)
T ss_pred HHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443 44444444444444444444433
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.012 Score=67.06 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHH
Q 013685 180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL 236 (438)
Q Consensus 180 lr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L 236 (438)
||+.|+.+.....+-..++.-+..+|..++.++.++-.....++..+-+.+.+-+.+
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEF 451 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 455555555555555555555555555555444444444444444444333333333
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.81 E-value=0.15 Score=60.58 Aligned_cols=289 Identities=19% Similarity=0.234 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELE-RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ 136 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe-e~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l 136 (438)
...+++.++..+..|.+...+++..|+.....|. .....+..+...+..+...+...-. ........
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~------------~~~~~~~~ 424 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERRE------------QIEEEYQA 424 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 4555566666666666666666666666555542 2223333444444444433332210 00000000
Q ss_pred cccchH-HHHHHHHhhHHHHHHHHHHHHHHHHhhhh-----hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHH
Q 013685 137 DTMESK-HLEEELSSLKSEVGQLRSALEIAETKLNE-----GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKS 210 (438)
Q Consensus 137 ~~~Ei~-eL~~Eie~lk~EI~~Les~Ie~aE~riqE-----e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~ 210 (438)
...+.. +....+..++.+...+...+..+...+.. +..+.-.....+++..+.......+....+..+...++.
T Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 504 (1201)
T PF12128_consen 425 LEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRK 504 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 22333444444444455544444444432 111111334444444455555555555555555555555
Q ss_pred HHHHHHHhhccHHHHhhhhHHhhHHHHHHhhh---------------------------------------hhh------
Q 013685 211 DIEELKANLMDKETELQGISEENEGLHMQLDK---------------------------------------NLM------ 245 (438)
Q Consensus 211 eLeELka~l~d~E~ELq~L~eEre~L~~ei~~---------------------------------------~~~------ 245 (438)
.-......+.....++..+......|..-+.. ..+
T Consensus 505 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dsly 584 (1201)
T PF12128_consen 505 ERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLY 584 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccc
Confidence 55555555555555566666666555555520 000
Q ss_pred --------------hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 013685 246 --------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEA 311 (438)
Q Consensus 246 --------------~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~ 311 (438)
..-+..++.++..+...+..+......++..+......+..++.++. .
T Consensus 585 Gl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~------------------~ 646 (1201)
T PF12128_consen 585 GLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT------------------Q 646 (1201)
T ss_pred eeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 11222444444444444444444444444444444444444444333 3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhHH-HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHH
Q 013685 312 ARSAEKEALMKLGLLMEEADKSNRR-AARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAA 376 (438)
Q Consensus 312 a~~~~~~~~~k~~~~~e~~~~~~~~-~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aa 376 (438)
+...-+-+-.++.++..+...-..+ .....++....+.+-..++.++..+.-+..+|..+-....
T Consensus 647 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~ 712 (1201)
T PF12128_consen 647 AEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQL 712 (1201)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444544444333222 2234455666777777788888888888888877655443
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.77 E-value=0.055 Score=61.46 Aligned_cols=265 Identities=16% Similarity=0.147 Sum_probs=135.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-------RETLLQLETAKLSVEALRAEGMKAIEAYS 84 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------eE~~~qLE~ae~~Ie~le~ei~elee~~~ 84 (438)
+-..+.-+|...|.+..+...--+..+..+.|..+.+.-+.-.. +.++.+++.++..+++++.+++=+..+..
T Consensus 277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999998888999999999998887766555 23566666666666666666655554443
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685 85 SIASEL-ERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 163 (438)
Q Consensus 85 sl~~EL-ee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie 163 (438)
..-..- ..+..+...||.-=..|...+-++..- +-..++. .-..-.+......++++++.--+.|...++
T Consensus 357 ekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl-------sA~ek~d--~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 357 EKGSDGQAASSYQFKQLEQQNARLKDALVRLRDL-------SASEKQD--HQKLQKELEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred hcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc-------chHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 221111 112223333333333333333333310 0000000 000111222233333444444444444555
Q ss_pred HHHHhhhhhhhhcH--HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHh-hhhHHhhHHHHHHh
Q 013685 164 IAETKLNEGQIQST--VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL-QGISEENEGLHMQL 240 (438)
Q Consensus 164 ~aE~riqEe~~e~~--~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~EL-q~L~eEre~L~~ei 240 (438)
.+|..|.+++.+-. .--..-.+++-.++-.+..++..|+..|..+++ ++++.+.|.+---|| ..|+++.+.++-.+
T Consensus 428 ~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55555555444221 011112334444444444555554444444432 223333322222221 13445555555444
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 241 ~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
. ++..++......+-+...-++-.+...+.|..+|.+++.+...-+
T Consensus 507 k---------el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse 552 (1243)
T KOG0971|consen 507 K---------ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE 552 (1243)
T ss_pred H---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4 677777777777777777777777777777777777777655443
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.72 E-value=0.12 Score=56.69 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH---HHHHHHHHHHHHHH-----hhhhhcHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST---VKIKSAFEQLEQIK-----HQSGLREVELEAELQKAK 209 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~---~elr~a~E~le~~K-----~e~~~ri~Ele~eie~~~ 209 (438)
.+...+=..-+..++..+..|+..++..=.=|.+++...= .+++.-|.++.... -....+|..+...|....
T Consensus 190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 190 SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3445555566777777777777777766555555555332 24444444443221 145667777777777766
Q ss_pred HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 210 SDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..|..| .+...+..+..|.+..+.|-..+.
T Consensus 270 ~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 270 ALLEEL--DLDEAEEKNEEIQERIDQLYDILE 299 (569)
T ss_pred HHHHhc--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 566777778888888877777776
No 53
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.12 Score=56.22 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 7 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 7 ~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
+.++-.+++-..+|..-...+......++.++.....+.+++..++.|+..+...-......++.+..++..-+++++.+
T Consensus 234 ~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444456666678888999999999999999999997754444444444444444444444444444
Q ss_pred HHHHHHHH
Q 013685 87 ASELERSR 94 (438)
Q Consensus 87 ~~ELee~~ 94 (438)
..+.+.++
T Consensus 314 q~~~d~Lk 321 (581)
T KOG0995|consen 314 QKENDELK 321 (581)
T ss_pred HHHHHHHH
Confidence 44443333
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.67 E-value=0.17 Score=57.09 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
.+.....-+.+.+....++|-.+.+.+..++-+....+.-+.....++...+-+|+.+.+++.+++.++..-
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 333444555666666677777777777777666666666666666666666666666666666666554433
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.67 E-value=0.01 Score=58.42 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
|..+-.++..+.-.+.....++.....++++++..+..++-.+..++..+..+..++...+.+++..+. .+..
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~-------kl~~ 84 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE-------KLSA 84 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhc
Confidence 334444444444444444444444444455555554444444444444444444444444444444444 3322
Q ss_pred cccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhh
Q 013685 114 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 193 (438)
Q Consensus 114 ~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e 193 (438)
... ..++..|+.++..++..+..|++.|..+..++..+..
T Consensus 85 v~~---------------------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~------------------- 124 (239)
T COG1579 85 VKD---------------------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK------------------- 124 (239)
T ss_pred ccc---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 221 3345555555555555555555555544444333322
Q ss_pred hhhcHHHHHHHHHHHHHHHHHH----HHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 194 SGLREVELEAELQKAKSDIEEL----KANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 194 ~~~ri~Ele~eie~~~~eLeEL----ka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.|..+...|..++..+.+. ..++..+..+.+.+..++..|..++.
T Consensus 125 ---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 125 ---EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222333333333333322 23344455556667777777777776
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.63 E-value=0.0097 Score=58.64 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
++.+-.+++++.-++.+...-|..+..+...+...+..+...++.++..+..++.++.++.+.+......|
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555554444444
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.58 E-value=0.084 Score=55.89 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+.+....+..+..++..-...+..|...=..|+.+|.
T Consensus 205 ~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 205 LEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444455555555555555555555555554
No 58
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.54 E-value=0.082 Score=50.62 Aligned_cols=136 Identities=20% Similarity=0.221 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD 137 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~ 137 (438)
+-.-+..-..+|..|...+....+.+..+...+-....+|..+.+.+..|..-+....
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dkn---------------------- 116 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKN---------------------- 116 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 3334445556666677777777777777777777777777766666666665433222
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
-.+. +.+...++.+...++..+.+++.+..... =.--...+--..-..++.++...+..+..+|..|..
T Consensus 117 L~eR-------eeL~~kL~~~~~~l~~~~~ki~~Lek~le----L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 117 LAER-------EELQRKLSQLEQKLQEKEKKIQELEKQLE----LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred chhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 45555666666666666666665544222 111122333344455667777777777777777777
Q ss_pred hhccHHHHh
Q 013685 218 NLMDKETEL 226 (438)
Q Consensus 218 ~l~d~E~EL 226 (438)
.+.+++-+|
T Consensus 186 klkEKer~L 194 (194)
T PF15619_consen 186 KLKEKEREL 194 (194)
T ss_pred HHHHHhhcC
Confidence 777776554
No 59
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.51 E-value=2.2e-05 Score=89.41 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 97 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI 97 (438)
-+...+..+++.+...|+.+......+...+.++...+.++..++......+..+.....++..++..+...|+.....+
T Consensus 152 K~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~ 231 (859)
T PF01576_consen 152 KEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQL 231 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555544444444444444455555555555555555555555566666666666666555555
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 013685 98 NLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 98 ~~LE~ei~kLe~eI~~~e 115 (438)
..+......|...+..+.
T Consensus 232 ~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 232 SQLQREKSSLESQLEELK 249 (859)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 555555555555555444
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.50 E-value=0.47 Score=57.71 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 013685 338 ARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAAS 377 (438)
Q Consensus 338 ~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa 377 (438)
+.+.++....+.-...|-..+.+|.-+.++|.+|-++..-
T Consensus 575 ~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~ 614 (1486)
T PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence 3445555555556677888888899999999988887766
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.49 E-value=0.023 Score=63.87 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=60.2
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHh-------hHHHHHHhhhhhhh--hhhhhhHHH---HHHHH
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE-------NEGLHMQLDKNLMC--QRESQLNND---LRKLA 260 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eE-------re~L~~ei~~~~~~--~~~~el~~e---l~~~~ 260 (438)
..++|+.+++.+|+.++.+|-.+.+..+.++.++++|+.- .+.|.+.+.-.++. .=|.-|..| ...+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4677999999999999999999999999999999877653 44455555411110 011111111 12233
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
..+.+.+.+|+-....+-.=..||.+||.-|.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555556665555
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.46 E-value=0.29 Score=54.44 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhh------hhcH-HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhh------hh
Q 013685 179 KIKSAFEQLEQIKHQS------GLRE-VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN------LM 245 (438)
Q Consensus 179 elr~a~E~le~~K~e~------~~ri-~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~------~~ 245 (438)
++...|..+-|-+.+. .+.+ .+|...+..+...+..++..+.-+..++++|..+|+.+...+..- +.
T Consensus 171 Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~ 250 (617)
T PF15070_consen 171 ELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLA 250 (617)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777776666432 2333 488888889999999999999999999999999998766555421 11
Q ss_pred hhh-----h--------hhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 246 CQR-----E--------SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 246 ~~~-----~--------~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
+.+ + ..|..+-......++.....|......+..+..+|..|+.++..
T Consensus 251 ~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 251 SEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 111 1 12222222222344555666777888999999999999999974
No 63
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.37 E-value=0.37 Score=53.63 Aligned_cols=316 Identities=21% Similarity=0.257 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 25 GNLIETISLMENMKNQLR--------ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 96 (438)
Q Consensus 25 e~L~~~e~~Ieelr~qL~--------dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e 96 (438)
.+|.......+++|.+-. .+++...+..-.-++........+..|.-|...+.+-+..+..+...|.+++..
T Consensus 190 ~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~ 269 (786)
T PF05483_consen 190 ENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDK 269 (786)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 344444445555554433 233333333333355666677777777777777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh---hh
Q 013685 97 INLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE---GQ 173 (438)
Q Consensus 97 I~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE---e~ 173 (438)
|+-|++.-.....-+... ..+...|..+++.++..+....+.-..++..++- -.
T Consensus 270 ~~qLeE~~~~q~E~Lkes-----------------------~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~ 326 (786)
T PF05483_consen 270 CNQLEEKTKEQHENLKES-----------------------NEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTL 326 (786)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876655544433322 3467778888888888888877777777766652 22
Q ss_pred hhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhh--hh------
Q 013685 174 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN--LM------ 245 (438)
Q Consensus 174 ~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~--~~------ 245 (438)
.+.+.+.-..++.+.+.+..+...+.++...|-.++.-|.-=..++.+.++.|..+.-+-..-..++... ..
T Consensus 327 ~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~e 406 (786)
T PF05483_consen 327 IQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVE 406 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Confidence 3333455556666666676666666666666666655555555555555555544444433333333210 01
Q ss_pred ----------------------------hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685 246 ----------------------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297 (438)
Q Consensus 246 ----------------------------~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~ 297 (438)
...+.++-.-+......|.+|+..|.+.-..-+.+..++.+|+.++..-...
T Consensus 407 leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLK 486 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLK 486 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1233455555566667899999999999999999999999999999863322
Q ss_pred CcccchhHHHH-------HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHH
Q 013685 298 TPNMNSNLAAE-------VEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQ 367 (438)
Q Consensus 298 ~~~~~~e~~~~-------~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~q 367 (438)
|.|+.+. -..-..--..++..+..+.+...-|.+.+.|+.-|..--+..+..|--+|--+|.+..|
T Consensus 487 ----N~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~ 559 (786)
T PF05483_consen 487 ----NTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ 559 (786)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 11111122345666777788888899999999998888777777777777666655544
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.37 E-value=5.8e-05 Score=84.33 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETE 276 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~ 276 (438)
.|...+.-...+++-|++.|.+....
T Consensus 403 RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 403 RLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444455555555444433
No 65
>PF13514 AAA_27: AAA domain
Probab=97.34 E-value=0.58 Score=55.23 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhch-HHHHHHHHHHHHHhccCC
Q 013685 336 RAARMAEQLEAAQSANCEAEAELRRLKVQS-DQWRKAAEAAASMLSTGN 383 (438)
Q Consensus 336 ~~~~~~e~l~a~~~a~~~~eae~~rl~vq~-~qwrkaae~aaa~l~~g~ 383 (438)
...++.++.-+...|..-|+.-+.+.|-.. +.=-+.|...-+.|.+|.
T Consensus 948 ~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~ 996 (1111)
T PF13514_consen 948 ELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGR 996 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence 334555666666777777888887777532 333445566777776654
No 66
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.31 E-value=0.18 Score=48.79 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR 94 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~ 94 (438)
..+.-+..++.++...+..+..++.+..++..........+++...-+ -.-|.............+..+..+-++..
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i---~~~i~e~~~~~~~~~~~i~~~~~erdq~~ 82 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTI---AQMIEEKQKQKELSEAEIQKLLKERDQAY 82 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHhhHHHHH
Confidence 345556777777777777788888888888877777777776544322 22334444445555566667777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
+.+++++.-.+.|...-..... -|..++.--+.++..|.....+|.-.+.+|+-+..
T Consensus 83 ~dL~s~E~sfsdl~~ryek~K~-----------------------vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 83 ADLNSLEKSFSDLHKRYEKQKE-----------------------VIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-----------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766555552 23333344457788888888899999999998888
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHH
Q 013685 175 QSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237 (438)
Q Consensus 175 e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~ 237 (438)
-....+..+-+.|.++...+.....-|.+.|++.+..+.-|...+..+.-|..+|..==+.|-
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999888888887777766665555544333333
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.59 Score=53.93 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=53.4
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHH------HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHH
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV------KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIE 213 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~------elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLe 213 (438)
.......++..++.+|..|+..|..+-.+.+-...+.|. -+.=.+-+++..+....+.-......+.+.+..+.
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555544443333332220 11111233333333333334444555666777777
Q ss_pred HHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 214 ELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 214 ELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
+.+..+..++-....|.++-..++..|.
T Consensus 339 e~~~EL~~I~Pky~~l~~ee~~~~~rl~ 366 (1200)
T KOG0964|consen 339 EKKDELSKIEPKYNSLVDEEKRLKKRLA 366 (1200)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 7777777777777777777776666665
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.25 E-value=0.053 Score=61.00 Aligned_cols=183 Identities=23% Similarity=0.271 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhh
Q 013685 150 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI 229 (438)
Q Consensus 150 ~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L 229 (438)
.++++|.+++...+.++.+|+.+...+. .=+..+..++++-.+-...-..++++|..-+.. -..-+..-.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq-~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~-------r~~ee~~aa-- 526 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQ-QDKQSLQQLEKRLAEERRQRASLEKQLQEERKA-------RKEEEEKAA-- 526 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHhhh--
Confidence 5677777777777777777777666444 223334444444444333334444433322211 110000000
Q ss_pred HHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHH
Q 013685 230 SEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEV 309 (438)
Q Consensus 230 ~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~ 309 (438)
+---.... ....|.- -++.++..++.++..|+..|..++.+...+..++.+|+.... +..+-.+.+++.+
T Consensus 527 ---r~~~~~~~-~r~e~~e--~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~----e~~~~~e~L~~aL 596 (697)
T PF09726_consen 527 ---RALAQAQA-TRQECAE--SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEK----ESEKDTEVLMSAL 596 (697)
T ss_pred ---hccccchh-ccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHH
Confidence 00000000 0001110 355566666667777777777777777777777765555321 1111123444333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHH-----------HHHHHHHHhhHHHHHHHhhhhh
Q 013685 310 EAARSAEKEALMKLGLLMEEADKSNRRAARMA-----------EQLEAAQSANCEAEAELRRLKV 363 (438)
Q Consensus 310 ~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~-----------e~l~a~~~a~~~~eae~~rl~v 363 (438)
.+.+ .=+.+++.|=.-.-||+ -||+-++..--.-|.|+.-||.
T Consensus 597 ~amq-----------dk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 597 SAMQ-----------DKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 11444444422222443 4666667666677778887774
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.24 E-value=0.73 Score=54.24 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLK---GNLIETISLMENMKNQLRESK-ESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS 88 (438)
Q Consensus 13 ~E~a~~ELe~lr---e~L~~~e~~Ieelr~qL~dl~-~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ 88 (438)
.+.+....+.+. +-....+..|..++.+.+.|. .+++-++..+.+...++...+..+..+.+.+..+++.++.+..
T Consensus 450 ~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 450 KEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 555566677777777777777 3555566666665555555666666666666666665555555
Q ss_pred HHHHHHH
Q 013685 89 ELERSRT 95 (438)
Q Consensus 89 ELee~~~ 95 (438)
..+.+..
T Consensus 530 ~~~~~~~ 536 (1317)
T KOG0612|consen 530 KNDNAAD 536 (1317)
T ss_pred HHHHHHH
Confidence 5444433
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.24 E-value=0.72 Score=54.09 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAE 75 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~e 75 (438)
-|..++.+|.+...+...+.+.|.+++.+-++.......+....+.+..|.+....++..|-..
T Consensus 1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~ 1479 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQ 1479 (1758)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888777666666666565666655555444444333
No 71
>PRK09039 hypothetical protein; Validated
Probab=97.22 E-value=0.05 Score=56.19 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 24 KGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL 103 (438)
Q Consensus 24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e 103 (438)
.+.|...+..|..+..++.++-+...-=......+..++..++..+..++.....++..+............++..+...
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 34455555555555555555444433333333446666666666666666666777776666555555666666666666
Q ss_pred HHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 104 VSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 104 i~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
+......+...- ..+-.|+.+|..++.-+..|.+.|..++.+.
T Consensus 125 L~~~k~~~se~~-----------------------~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 125 LDSEKQVSARAL-----------------------AQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444433 2455556666666666666666666655554
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.15 E-value=0.029 Score=51.15 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=49.7
Q ss_pred HHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHH
Q 013685 318 EALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE 373 (438)
Q Consensus 318 ~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae 373 (438)
-.--|+..|.++++.+..+....+++|+-+...-+.+|-=++.|--++++|=+=-+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999965443
No 73
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.92 Score=52.80 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
+-+...+...+.++....+.+.+..-.+..+..+|+.++..+..|+..+.+++..|=
T Consensus 700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 700 EQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666777777777777777777777776653
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.09 E-value=0.92 Score=52.53 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh-hhh--------------hhhHHHHHHHHHHHH
Q 013685 200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC-QRE--------------SQLNNDLRKLAQAVE 264 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~-~~~--------------~el~~el~~~~~~Ie 264 (438)
.|..+++.+...|..+...+..++..-+.|..|++.|..++.+..-+ .++ +.+.....++...|.
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667777777777777777777777888887777632111 111 122233333334444
Q ss_pred HHHHchhhHHHHHHHHHHHHHHHHHH---------------------HhhccccCcccchhHHHHHHHHHHHHHHHHHHh
Q 013685 265 DLKANLMDKETELQNISEENEMLKLE---------------------ISKRELDTPNMNSNLAAEVEAARSAEKEALMKL 323 (438)
Q Consensus 265 ~Lka~L~~le~~l~~L~eEieeLKsE---------------------I~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~ 323 (438)
.++..|+.-.-.+.++...+..++.+ ++.|+.+ |..+...|..-+.- ..-.+-|
T Consensus 492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E----Na~LlkqI~~Lk~t-~qn~~~L 566 (1195)
T KOG4643|consen 492 NLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE----NAHLLKQIQSLKTT-SQNGALL 566 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHH-hHHHHHH
Confidence 55555555444445555444444444 3444433 45555555554443 3344455
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 013685 324 GLLMEEADKSNRRAARMAEQLEAAQSANCEAEAEL 358 (438)
Q Consensus 324 ~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~ 358 (438)
-+.++..+.-...--.+--.|.|.+.-++-||-+.
T Consensus 567 Eq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 567 EQNNNDLELIHNELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777778888888888787774
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.97 Score=52.63 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEA 330 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~ 330 (438)
++..++..+...|.++..+.+++.....++.....+++..+. .....+..++.+..+.-..|..+...+
T Consensus 406 elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~-----------~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 406 ELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLD-----------SLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH-----------HHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666666666665 334445555555555555555555554
No 76
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.34 Score=48.58 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 48 ETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 48 ~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+......+..+......+...|+.|...+.++...+.++..+++++..+|..++.+|..++..|..-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555555554444333
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.52 Score=50.06 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIA 87 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~ 87 (438)
.|...+.+|..+...|....++.+.|.+++......+..+..+|-....++..++..|..+...++.+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555555555555555555554444444444444444444444444444444444433333
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.98 Score=51.12 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=100.0
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
.|--+++...-+..++.-|...+..++.++++-....+ -....|.+....++...+++..|++++
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t---------------t~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT---------------TQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc---------------hHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666666555222 223345556666667777788888888
Q ss_pred ccHHHHhhhhHHhhHHHHHHhhhhhh-----hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 220 MDKETELQGISEENEGLHMQLDKNLM-----CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei~~~~~-----~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
.+.-..|+.|.-|+-.|...+...++ +.+-.+|.+.+...+--.+.++-++..+..+..+-..+|+.++.++++|
T Consensus 496 kE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkel 575 (1118)
T KOG1029|consen 496 KELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKEL 575 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88888899999999999998885544 3345677777777777778888888888888888888888888888766
Q ss_pred cc
Q 013685 295 EL 296 (438)
Q Consensus 295 ~~ 296 (438)
-.
T Consensus 576 k~ 577 (1118)
T KOG1029|consen 576 KE 577 (1118)
T ss_pred HH
Confidence 53
No 79
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.88 E-value=1.2 Score=50.48 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=66.0
Q ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 6 EAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSS 85 (438)
Q Consensus 6 ~~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~s 85 (438)
|+.=......++.|+..++..+.++.+..+-+.....++.++..........+..++...+-.=-.+-.|..+++++.-+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444555666677777777777766666666666666666666666555555555555555555555555555554444
Q ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 86 IAS----------ELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 86 l~~----------ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+.. |.+-++-+|.+|++++.-|+..++...
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 344555567777777776666655554
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.77 E-value=1.8 Score=50.99 Aligned_cols=64 Identities=25% Similarity=0.226 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAE 75 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~e 75 (438)
++..|..---.+...|.+.....+.+...+.+.+-+-+.|+...+....+-+..+...+....+
T Consensus 1409 ~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~e 1472 (1758)
T KOG0994|consen 1409 RAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRE 1472 (1758)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666677777777766666666665555544444444333333333
No 81
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.71 E-value=0.0091 Score=67.03 Aligned_cols=247 Identities=21% Similarity=0.198 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETI---SLMENMKNQLRESKESETQAQALARET---LLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e---~~Ieelr~qL~dl~~e~~~A~~~~eE~---~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
.+-+..+..+|+.+|...+ ..+.++..+...|..++..+..+.... ..--+.+...|..++.+-.-+.+.+.++
T Consensus 283 ~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~ 362 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSL 362 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555555544443 444455556666666666666665432 1223445555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE 166 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE 166 (438)
..++..+...+..|+.++..+...+..+..+. .-....+..|.....-+..|++-|+.-|...+
T Consensus 363 ~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~----------------~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 363 QSELRELEEEIQELEQEKEQLLKEIEELEASL----------------EALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777766666666666666421 11133456677777788888888888888877
Q ss_pred HhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh
Q 013685 167 TKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC 246 (438)
Q Consensus 167 ~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~ 246 (438)
.+..-.... .....++..++.-+...+.-..++...+..++.+|.+.+..+..+..++... .
T Consensus 427 ~e~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~--~ 488 (722)
T PF05557_consen 427 KEETTMNPS----------------EQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSL--K 488 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccCc----------------hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhh--h
Confidence 764322210 0112222233333333333333444455666666666666555555554300 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
.........+......+..|+..+.+++..+..|..++..|..+|++
T Consensus 489 ~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 489 EQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp -----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111122234556667777778888888888888888888876
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.69 E-value=1.4 Score=48.51 Aligned_cols=337 Identities=19% Similarity=0.231 Sum_probs=184.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 013685 11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVE-----------ALRAEGMKA 79 (438)
Q Consensus 11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie-----------~le~ei~el 79 (438)
-+.-.+...+..+...|..++..|..+...|+++......-...+..+......++..+- .++..+..+
T Consensus 94 ~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 94 YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Confidence 344456666777777778888888888888888777777766666665555555555443 333333333
Q ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHH
Q 013685 80 IEAYSSIA------------SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 147 (438)
Q Consensus 80 ee~~~sl~------------~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~E 147 (438)
+..+.... .-+..++..+..|+..+..+=.-+..+...+ .+.+.+|..-
T Consensus 174 e~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~-------------------P~ql~eL~~g 234 (560)
T PF06160_consen 174 EEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF-------------------PDQLEELKEG 234 (560)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-------------------HHHHHHHHHH
Confidence 33322221 1133333333333333333332222222100 0111111111
Q ss_pred HH------------hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685 148 LS------------SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL 215 (438)
Q Consensus 148 ie------------~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL 215 (438)
+. .+..+|.+++..|..+...|..+.+ ..+.........+|..+...+++=-..-...
T Consensus 235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l----------~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V 304 (560)
T PF06160_consen 235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL----------DEVEEENEEIEERIDQLYDILEKEVEAKKYV 304 (560)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2333444444444444444433332 2223333344445555555554444444444
Q ss_pred HHhhccHHHHhhhhHHhhHHHHHHhhh--------hhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH
Q 013685 216 KANLMDKETELQGISEENEGLHMQLDK--------NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML 287 (438)
Q Consensus 216 ka~l~d~E~ELq~L~eEre~L~~ei~~--------~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL 287 (438)
......+..-|..+...+..|..++.+ ......-..+...+..+...+..+...+......-..+...+..+
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~ 384 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEI 384 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 445555555555555555555555542 111222236777788888888888888877777777777777777
Q ss_pred HHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH---------HHHHHHHHHhhHHHHHHH
Q 013685 288 KLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM---------AEQLEAAQSANCEAEAEL 358 (438)
Q Consensus 288 KsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~---------~e~l~a~~~a~~~~eae~ 358 (438)
...+...+..-. +....+...+..|..|.-+|-.+...+..-.|+..+. -..+..+...=..+-..|
T Consensus 385 ~~~l~~ie~~q~----~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L 460 (560)
T PF06160_consen 385 EEQLEEIEEEQE----EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDEL 460 (560)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777776665522 3444566677888888888888777777777776443 356666666666677788
Q ss_pred hhhhhchHHHHHHHHHHHHHhc
Q 013685 359 RRLKVQSDQWRKAAEAAASMLS 380 (438)
Q Consensus 359 ~rl~vq~~qwrkaae~aaa~l~ 380 (438)
.+.++=-+.--+--+.|...+-
T Consensus 461 ~~~pinm~~v~~~l~~a~~~v~ 482 (560)
T PF06160_consen 461 NQVPINMDEVNKQLEEAEDDVE 482 (560)
T ss_pred hcCCcCHHHHHHHHHHHHHHHH
Confidence 7777766665555555554443
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.69 E-value=0.23 Score=45.30 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN 135 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~ 135 (438)
+....+.+.++..+..++.+....+..+.++...+..+..+|..++..+..+...+......
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~------------------ 71 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR------------------ 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------------
Confidence 33445555566666666666666677777777777777777777777777777666655520
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
.+..-.|+++|.-+..++.+...++..+..++.+.
T Consensus 72 --~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 72 --KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred --HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111456666666666666666665555554443
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.67 E-value=0.00043 Score=77.38 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhHHH---HHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHH---HHHHHH
Q 013685 140 ESKHLEEELSSLKSE---VGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK---AKSDIE 213 (438)
Q Consensus 140 Ei~eL~~Eie~lk~E---I~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~---~~~eLe 213 (438)
+...|+.+++.++.. +.+++..++.+..++.+.. .++.....++.....+-+++..|+.++++ ++..|+
T Consensus 292 ~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~-----~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle 366 (713)
T PF05622_consen 292 EARALRDELDELREKADRADKLENEVEKYKKKLEDLE-----DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE 366 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445556666666553 3446666666666665543 45566666666667777777777777666 444555
Q ss_pred HHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 214 ELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 214 ELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
.++..+.+++.++.....+.+.|..++
T Consensus 367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 367 EYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444444333
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.66 E-value=0.28 Score=44.84 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.+...|.++.+.-+.+.+++.-+..+....+.....+..+.+..++.|..+...+..+...++.+..+|+-++.+...|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHhhhcc
Q 013685 102 GLVSKLEADTSNAN 115 (438)
Q Consensus 102 ~ei~kLe~eI~~~e 115 (438)
..+.+.+..|..++
T Consensus 87 k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 87 KELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766666
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.65 E-value=0.00046 Score=77.16 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------HHHHHHHHH
Q 013685 10 TKNAESAHLELQSLKGNL---IETISLMENMKNQLRESKESETQAQALA-------------RE-------TLLQLETAK 66 (438)
Q Consensus 10 ~~~~E~a~~ELe~lre~L---~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------------eE-------~~~qLE~ae 66 (438)
+..+..+.+|++.+|..- ...+..|+..|.+|.++..=..+....- ++ +..+++..+
T Consensus 290 A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k 369 (713)
T PF05622_consen 290 AREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYK 369 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666666666643 3345566666666555544333332221 11 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
..|-.+...+......+..+..++..+..++..++.+...+..
T Consensus 370 ~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 370 KQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555555555555555555555555444444433
No 87
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.62 E-value=2.1 Score=49.65 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
++.........+...+.++...+......+..+...+..+...+..++..+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555555666666666666665555
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.62 E-value=0.14 Score=46.81 Aligned_cols=87 Identities=30% Similarity=0.376 Sum_probs=63.0
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
.+.++..++..++++-+.|++.|..++.++...+. ....++-+.++.+ +.|..++..|..+-..+
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~----~~e~~~~daEn~k-----------~eie~L~~el~~lt~el 68 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQE----NKECLILDAENSK-----------AEIETLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999877666 3334444444433 44556777777777777
Q ss_pred ccHHHHhhhhHHhhHHHHHHhh
Q 013685 220 MDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+++.+|..++.+++.|...+.
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888887777766665554
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.57 E-value=0.22 Score=50.98 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=82.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
.|.+.+..+...|...+..+...+..++.+...+..++........+ -..+|+.++.+|..+...+......+..+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888888888888888888888887765 35677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..++..+...|..+...+.++..+|..+.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777766
No 90
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.57 E-value=2.9 Score=50.72 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=9.9
Q ss_pred cchHHHHHHHHhhHHHHHHHHHH
Q 013685 139 MESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
+..+.+...+...+..+..+...
T Consensus 844 ~~l~~~~~aL~~y~~~l~~l~~~ 866 (1353)
T TIGR02680 844 DALEAVGLALKRFGDHLHTLEVA 866 (1353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 91
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.43 E-value=0.95 Score=43.56 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 31 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 31 e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
...|..++.++.-++.+...++..+.....+|+.+...-.... ..+..+.....+...+++.++..+.....
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~e-------r~~Kv~enr~~kdEE~~e~~e~qLkEAk~- 74 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESE-------RGMKVIENRAQKLEEKMEAQEAQLKEAKH- 74 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Confidence 4567777888888887777777777666666666655544433 33445555555555555555555444432
Q ss_pred hhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH
Q 013685 111 TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQI 190 (438)
Q Consensus 111 I~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~ 190 (438)
|. +..+-.+.++-..+.-+.+++.+.+.+.+..++.+.++..
T Consensus 75 ia----------------------E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeE---------------- 116 (205)
T KOG1003|consen 75 IA----------------------EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEE---------------- 116 (205)
T ss_pred HH----------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 11 2224466677777888888888888888877777665444
Q ss_pred HhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHch
Q 013685 191 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL 270 (438)
Q Consensus 191 K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L 270 (438)
.+.-+...+.-|..........+-.+..+...|...++ |.+.+++.. .+.|..|.-..
T Consensus 117 -------------e~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk-------EaE~rAE~a--ERsVakLeke~ 174 (205)
T KOG1003|consen 117 -------------DLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK-------EAETRAEFA--ERRVAKLEKER 174 (205)
T ss_pred -------------HHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------hhhhhHHHH--HHHHHHHcccH
Confidence 22233333333333333333333333333333333444 334444444 47888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 271 MDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 271 ~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
.+++-.+.....++..+..++.+..
T Consensus 175 DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 175 DDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877543
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.39 E-value=2.3 Score=47.47 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=30.0
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccH--HHHhhhhHHhhHHHHHHhh
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDK--ETELQGISEENEGLHMQLD 241 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~--E~ELq~L~eEre~L~~ei~ 241 (438)
....++..+-.++..++.+|.++...+... +..++.+.++...+..++.
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777653 3345555554444444444
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.37 E-value=0.19 Score=51.39 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 10 TKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARET----LLQLETAKLSVEALRAEGMKAIEAYSS 85 (438)
Q Consensus 10 ~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~----~~qLE~ae~~Ie~le~ei~elee~~~s 85 (438)
..|.+.+..+...|...+..+...+..++.+...|..++.+.....+++ ...|..++..|.....++......+..
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888999999999999999999999999999999999885 558888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 86 IASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
+..+|..+...|......+.++..+|...+.
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888874
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.37 E-value=2.3 Score=47.32 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=77.0
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH--HHhhhhhcHHHHHHHHHHHHHHHHHHH
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ--IKHQSGLREVELEAELQKAKSDIEELK 216 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~--~K~e~~~ri~Ele~eie~~~~eLeELk 216 (438)
++..+.-.+|..++.++..+...+...+..|..+ ...|+.+-. -.+.+..||-|.-.-|++.+.+|..-=
T Consensus 440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL--------~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl 511 (594)
T PF05667_consen 440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQL--------VKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL 511 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455556666666666666655555544433 333443322 245778888888888888888877665
Q ss_pred HhhccHHHHhhhhHHhhHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 217 ANLMDKETELQGISEENEGLHMQLD----KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 217 a~l~d~E~ELq~L~eEre~L~~ei~----~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
..-..+-.++..+.+.-+.==.-.. +.. +-.+.-+..++.=..+...=..|...-..--.+..+|.+|..+|.
T Consensus 512 ~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA---KkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 512 SDTRELQKEINSLTGKLDRTFTVTDELIFRDA---KKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555555554443322111111 111 112344444555455555555555555566666667777776665
No 95
>PRK11281 hypothetical protein; Provisional
Probab=96.25 E-value=3.9 Score=48.72 Aligned_cols=136 Identities=18% Similarity=0.092 Sum_probs=64.7
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL 215 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL 215 (438)
+..+....|..|...++.++..++..+........=.+.+. ..+.........++..+...|...+..-.+.
T Consensus 189 l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~--------d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 189 LRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQR--------DYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777776666666665544433222221 1111122222222333333333322222222
Q ss_pred HHhhc---------cHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHH
Q 013685 216 KANLM---------DKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM 286 (438)
Q Consensus 216 ka~l~---------d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEiee 286 (438)
..... ..-.-++...+.|-.|...+. .+-.++..+..+-.+.+..+..+......+.++++-
T Consensus 261 ~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~---------~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 261 TVQEAQSQDEAARIQANPLVAQELEINLQLSQRLL---------KATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111225555666767766666 455555555555556666666666666666666554
Q ss_pred HH
Q 013685 287 LK 288 (438)
Q Consensus 287 LK 288 (438)
|+
T Consensus 332 l~ 333 (1113)
T PRK11281 332 LK 333 (1113)
T ss_pred hc
Confidence 43
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.22 E-value=2.7 Score=46.61 Aligned_cols=130 Identities=28% Similarity=0.304 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIE------------------AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS 119 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee------------------~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~ 119 (438)
+..+++.++..|..+.+.+..... ++.-+-.+|+.-..+|..|+.++..|...+.....+..
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 566666666666666554443322 33334445666666777777777777665554442110
Q ss_pred cCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHH
Q 013685 120 QNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREV 199 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~ 199 (438)
....+.+..+..-+.+...+|.+|-..|+..++-+.++ ...+...|.
T Consensus 274 ---------------~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e------------------~e~~~~qI~ 320 (629)
T KOG0963|consen 274 ---------------LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE------------------REKHKAQIS 320 (629)
T ss_pred ---------------hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 00134555555666666666666665555555544443 334455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013685 200 ELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~ 220 (438)
.++.+++.+...|++++..+-
T Consensus 321 ~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666555443
No 97
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.22 E-value=3.6 Score=47.98 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIE---AYSSIASE 89 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee---~~~sl~~E 89 (438)
|..+..-+..|+++|.+--..+-.+++.|++++.++.+....+.+.+..-..+...++.+..-...++. .|..--.+
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmD 258 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMD 258 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhh
Confidence 445555556666666666666666667777777777666666666666666666666655555544443 23333333
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 90 LERSRTRINLLEGL-------VSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 90 Lee~~~eI~~LE~e-------i~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
++-.++++..|..+ -.=|+..|.++.+- . +..-.+++|.+++..+.-++.+..-.+..+
T Consensus 259 s~fykdRveelkedN~vLleekeMLeeQLq~lrar---s-----------e~~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRAR---S-----------EGATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc---c-----------ccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444443 33444555555531 0 001236788888888888888888888877
Q ss_pred HHHHHhhhhhhhhcHHHHHHHHHHHH
Q 013685 163 EIAETKLNEGQIQSTVKIKSAFEQLE 188 (438)
Q Consensus 163 e~aE~riqEe~~e~~~elr~a~E~le 188 (438)
+.+--+..-++.+. ..|...++.++
T Consensus 325 eeL~eEnstLq~q~-eqL~~~~ellq 349 (1195)
T KOG4643|consen 325 EELHEENSTLQVQK-EQLDGQMELLQ 349 (1195)
T ss_pred HHHHHHHHHHHHHH-HHhhhhhhHhh
Confidence 76666655554433 24444444433
No 98
>PRK09039 hypothetical protein; Validated
Probab=96.21 E-value=0.9 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=9.1
Q ss_pred HHHHhhhhhcHHHHHHHHHHH
Q 013685 188 EQIKHQSGLREVELEAELQKA 208 (438)
Q Consensus 188 e~~K~e~~~ri~Ele~eie~~ 208 (438)
+....+...+|..+...|...
T Consensus 164 e~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 164 EKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.14 E-value=3.4 Score=47.13 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013685 38 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRN 117 (438)
Q Consensus 38 r~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~ 117 (438)
..++..++.++.-.+....++..++-.+..+|..++.++.+.+-+++.+..++.....++.....+|--+..++.+..
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~-- 175 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN-- 175 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--
Confidence 333444444444444444445555555555555555555555555555555555555554444444444444444433
Q ss_pred cccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 118 LSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.+++.+..++.-.-+++.++..+++..-.++.+..+
T Consensus 176 ---------------------~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~ 211 (1265)
T KOG0976|consen 176 ---------------------EELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLI 211 (1265)
T ss_pred ---------------------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777777777777777766666655444
No 100
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.05 E-value=3.6 Score=47.12 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685 197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 276 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~ 276 (438)
++.+.+..|..++..|.-++..-.-.+++|+....-++.|...+. .++.++..+...|..|...|..-+.-
T Consensus 625 qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~---------~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 625 QLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK---------DLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677778888888888888888888999998888888888887 77888888888888888888777777
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 013685 277 LQNISEENEMLKLEISKRELD 297 (438)
Q Consensus 277 l~~L~eEieeLKsEI~~~~~~ 297 (438)
-+.+......|..++..+..+
T Consensus 696 ~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 696 SEELEAKCRELEEELERMKKE 716 (769)
T ss_pred chhhhhHHHHHHHHHHhhhcc
Confidence 777777777888888777655
No 101
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.99 E-value=0.49 Score=49.44 Aligned_cols=130 Identities=13% Similarity=0.160 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
.-++..+.-...+...+.+++.+|..+..++...+..+.. +-.|++.+-.........+.++.+.|+....-+...
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3345555555566666667777777777777777666622 667888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH
Q 013685 94 RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
...++.+.++++.+..+|...+.+. -| ++....|+.-|..++.||.++.=+|-.
T Consensus 300 t~~L~~IseeLe~vK~emeerg~~m--------tD---------~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 300 TRELAEISEELEQVKQEMEERGSSM--------TD---------GSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--------CC---------CCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 9999999999999999999999632 11 344558888888888888887666543
No 102
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.94 E-value=1.8 Score=42.07 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 29 ETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
+.+..|..++..+.....+.......++++.........-|+.++..+..+..+.... -......|..+-.+...+.
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~ 82 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAY 82 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHH
Confidence 4566677777777777766777777777777777777777777777777766654333 3444566777777777777
Q ss_pred HHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHH
Q 013685 109 ADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLE 188 (438)
Q Consensus 109 ~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le 188 (438)
.++.+++.+|+ ..-..+..++.-|+..+..-.-|+..+.....++....-.-..=..-+-+.|+
T Consensus 83 ~dL~s~E~sfs----------------dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~ 146 (207)
T PF05010_consen 83 ADLNSLEKSFS----------------DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE 146 (207)
T ss_pred HHHHHHHhhHH----------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777775331 01123333444444444444444444444444444333222212222334445
Q ss_pred HHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 189 QIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 189 ~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
....++.+-...+.+++..+++.|-...-.+.-++..|..-..+|+.|-.-+
T Consensus 147 ~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkIC 198 (207)
T PF05010_consen 147 KANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKIC 198 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555554443
No 103
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=2.1 Score=42.99 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
|..--..++.+..+...++..++.+..+++.+-..+..+..++.+....+..+..+++.++.+|......+.+==.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555666666666666666666666666676666655544333
No 104
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=3.5 Score=45.34 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=58.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHchhh
Q 013685 194 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQ-LNNDLRKLAQAVEDLKANLMD 272 (438)
Q Consensus 194 ~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~e-l~~el~~~~~~Ie~Lka~L~~ 272 (438)
....-+..+.+--+++++|-+.|-+...+=.+-.+|-++|=.|+..+..-..++-||+ +++++..+...++-++.++.+
T Consensus 140 ~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 140 LKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666788888888888888888888888888888888776556666665 777888888777777776665
Q ss_pred H
Q 013685 273 K 273 (438)
Q Consensus 273 l 273 (438)
.
T Consensus 220 ~ 220 (772)
T KOG0999|consen 220 A 220 (772)
T ss_pred H
Confidence 3
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=3.6 Score=45.25 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685 250 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297 (438)
Q Consensus 250 ~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~ 297 (438)
+-+..-++.....+......+++++..+..+..-|+++.+.++.++.+
T Consensus 421 ~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~e 468 (581)
T KOG0995|consen 421 PLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELE 468 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888899999999999999999999888877755
No 106
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.87 E-value=1.8 Score=41.59 Aligned_cols=127 Identities=22% Similarity=0.247 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 157 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~ 157 (438)
.+-..+..+..|++.++.-+..|++.-..|-+.-..++. ++-.|..+|..+..+-..
T Consensus 57 qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk-----------------------E~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 57 QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK-----------------------EQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhH
Confidence 333444455555555555555555555555554444442 333444444444444444
Q ss_pred HHHHHHHHHHhhhhhhhhcH---HHH---HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhh
Q 013685 158 LRSALEIAETKLNEGQIQST---VKI---KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ 227 (438)
Q Consensus 158 Les~Ie~aE~riqEe~~e~~---~el---r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq 227 (438)
+-.-.+-.-.++.++..... .++ ...+-+.+..-++...+|.++...|.....-..+|+.....+|..|.
T Consensus 114 l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 114 LLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433222 122 22333445566677888888888888888888888888877777664
No 107
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.87 E-value=4.1 Score=45.74 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD 137 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~ 137 (438)
...|++.++.+++.-.-.-.++-..++.+..+=.++..+....--++.+++.+|.+...
T Consensus 469 yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~--------------------- 527 (786)
T PF05483_consen 469 YSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKK--------------------- 527 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------------------
Confidence 44555555555544333334444455555555555555555555555555555555542
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
.-..+..+|+.+...=.+|+.-++.+..++..-.. ++.+-...-+..-....-.+......|+-++..+..|+.
T Consensus 528 --qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~----Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK 601 (786)
T PF05483_consen 528 --QEEKMLKQIENLEETNTQLRNELESVKEELKQKGE----EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK 601 (786)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 01123334444444444444444433332221111 111111111111111122233344556666667777777
Q ss_pred hhccHHHHhhhhHHhhHHHHHHhh
Q 013685 218 NLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 218 ~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+..+..-+..|..+|..|+..+.
T Consensus 602 qvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 602 QVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777777778888888988888887
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.85 E-value=3.8 Score=45.14 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 233 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr 233 (438)
.+...|..+.........--+.+...++.+...|........++...|++|..+=
T Consensus 355 ~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 355 ELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444555555555555555555555544444444433
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=3.3 Score=47.24 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=63.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETE 225 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~E 225 (438)
.++..+..+...+....+.+..+++.-..-. ...+......+..+......... +..+-+..-.+.++..++-+...+
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~-es~k~~~~~a~~~~~~~~~~~~~-qeqv~El~~~l~e~~~~l~~~q~e 814 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNADI-ESFKATQRSAELSQGSLNDNLGD-QEQVIELLKNLSEESTRLQELQSE 814 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhhhhcccchhhhhhhh-HHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4566667777777766666666654322210 11222222222222221111111 112222222266666666667777
Q ss_pred hhhhHHhhHHHHHHhhh---hhhhh--hhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685 226 LQGISEENEGLHMQLDK---NLMCQ--RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 288 (438)
Q Consensus 226 Lq~L~eEre~L~~ei~~---~~~~~--~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK 288 (438)
++.++++...+...+.. +.+.+ .+..+-.+......++..+..++.....-...+.+++..|+
T Consensus 815 ~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 815 LTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 77777777777666651 11111 22333444444444444444444444444444444444443
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.79 E-value=4.3 Score=45.30 Aligned_cols=81 Identities=7% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 35 ENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI----ASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 35 eelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl----~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
..+..++.+++..+......++.+..++..+...++.+...+..+...+.+. ..+.++++.++..++..+......
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555554444332 223445566666666666666666
Q ss_pred hhhcc
Q 013685 111 TSNAN 115 (438)
Q Consensus 111 I~~~e 115 (438)
+...-
T Consensus 285 l~~l~ 289 (650)
T TIGR03185 285 LRELA 289 (650)
T ss_pred HHHHh
Confidence 65555
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.78 E-value=0.043 Score=52.04 Aligned_cols=93 Identities=27% Similarity=0.318 Sum_probs=55.0
Q ss_pred HHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 013685 188 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK 267 (438)
Q Consensus 188 e~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lk 267 (438)
-+.+.+..+++..+..++..++..+......+.++..++..|..+...|..+|. +..+-+..+.+++..|.
T Consensus 87 ~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~---------ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 87 YRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK---------EKNKANEILQDELQALQ 157 (194)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 345777788888888888888888888888888888888888888888888888 77788888888888888
Q ss_pred HchhhHHHHHHHHHHHHHHHHH
Q 013685 268 ANLMDKETELQNISEENEMLKL 289 (438)
Q Consensus 268 a~L~~le~~l~~L~eEieeLKs 289 (438)
..++.++.++..+..+|..|=.
T Consensus 158 l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 158 LQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888743
No 112
>PLN02939 transferase, transferring glycosyl groups
Probab=95.78 E-value=5.6 Score=46.63 Aligned_cols=269 Identities=16% Similarity=0.211 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 27 LIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSK 106 (438)
Q Consensus 27 L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~k 106 (438)
+.+.-.-|.+..+.+=-|...+-+|+..++.++.+-+.+...|.-|+-.+.+....+. +.. +-+..+.-+++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 205 (977)
T PLN02939 130 LEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK-LAA---QEKIHVEILEEQLEK 205 (977)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh-hhh---hccccchhhHHHHHH
Confidence 4455556666666666777778888888899999999999999988888887643332 221 244456678899999
Q ss_pred HHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 013685 107 LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ 186 (438)
Q Consensus 107 Le~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~ 186 (438)
|..++...+.+. ++-..-|..++..+|.|--.|+..|+.+..++.+-. ++...+-.
T Consensus 206 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 261 (977)
T PLN02939 206 LRNELLIRGATE-------------------GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA-----ETEERVFK 261 (977)
T ss_pred Hhhhhhcccccc-------------------ccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----hhhHHHHH
Confidence 999988888522 222333667788888888888888888887776542 23333444
Q ss_pred HHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh----hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 013685 187 LEQIKHQSGLREVELEAELQKAKSDIEELKAN----LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQA 262 (438)
Q Consensus 187 le~~K~e~~~ri~Ele~eie~~~~eLeELka~----l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~ 262 (438)
++...+-+..-+.+|+..+-....++-+|.-- +.++-.-||.|-+.--.--...- +-.++-.+|+.+++++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 339 (977)
T PLN02939 262 LEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAA--LVLDQNQDLRDKVDKLEAS 339 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHH
Confidence 55555556666666666666666666555433 44444444443332211111110 1112223666677766666
Q ss_pred HHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 013685 263 VEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKS 333 (438)
Q Consensus 263 Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~ 333 (438)
+.+.......-+ .++-+..++.-++.-+. .-..+.-+.++.-.+-.++-...|+.+.+|-.++
T Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 340 LKEANVSKFSSY-KVELLQQKLKLLEERLQ-------ASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred HHHhhHhhhhHH-HHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 655544322111 11222233333333332 3344566666666666677777777888777665
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.71 E-value=6.4 Score=46.79 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=29.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
++...++...+.....+-.|...|...-.....+..++.....++.
T Consensus 742 ~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~ 787 (1317)
T KOG0612|consen 742 EKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVN 787 (1317)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhc
Confidence 4555677777777777777777776666666666666554444444
No 114
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.71 E-value=6.8 Score=47.02 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE 57 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE 57 (438)
|...+-..-.+++.++.....+|+.-+.+.+.|+.++....+.+++
T Consensus 210 ~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~e 255 (1294)
T KOG0962|consen 210 HLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEE 255 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444555555555555555555555555555555555544
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=5.7 Score=45.34 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=63.3
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh---hhhhcHHHHHHHHHHHHHHHHHH
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH---QSGLREVELEAELQKAKSDIEEL 215 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~---e~~~ri~Ele~eie~~~~eLeEL 215 (438)
.+|..++..++-..++|.+|..+|...-..+.-+-.++ ...-.++.++.. .-.+|.++|++.....+.-...+
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek----q~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~i 547 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK----QELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAI 547 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778777777776666555544433 333334444444 34556777887777777777777
Q ss_pred HHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 216 KANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 216 ka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
+..+.+++.|...-..+.+.++..++
T Consensus 548 kdqldelskE~esk~~eidi~n~qlk 573 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLK 573 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 77777777776666666666555555
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.56 E-value=3.4 Score=42.47 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 59 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 59 ~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
..++......+..++..+..+...+..+...+...+..+...+.
T Consensus 136 ~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 117
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.54 E-value=1.3 Score=50.49 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=81.9
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHH-HHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAEL-QKAKSDIEELK 216 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~ei-e~~~~eLeELk 216 (438)
+.|..-|+.+++..-..---++.++--+|+-+.+.-. +++. .+.+..++|.+.-..+ ...+..-.+|.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~----qlr~-------~ree~eq~i~~~~~~~s~e~e~~~~~le 91 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMR----QLRQ-------VREEQEQKIHEAVAKKSKEWEKIKSELE 91 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH----HHHH-------hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555555444444445555555555444433 4444 4445555555544443 34444445667
Q ss_pred HhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 217 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 217 a~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
..+.++...|..+..+|..|...+. +-.+-+..+...-....+.+.++..+++.+.-+|..|+-++.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~---------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQ---------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888776 444445555555556666666777777777777777777775
No 118
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.53 E-value=4.6 Score=43.92 Aligned_cols=143 Identities=19% Similarity=0.244 Sum_probs=80.1
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHH---HHHHHHHHHHHHHH
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL---EAELQKAKSDIEEL 215 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~El---e~eie~~~~eLeEL 215 (438)
-+.++|+.+...++.+|..|+..|.....++++...+... ..+....-...+...+... +.++.-+..++.-+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~ 349 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG----EQESFREQPQELSQQLEPELTTEAELRLYYQELYHY 349 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999888774442 2222222222222222111 44444444444443
Q ss_pred HH-----------hhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685 216 KA-----------NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN 284 (438)
Q Consensus 216 ka-----------~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi 284 (438)
+. ++.++++|++.|+.. +....+.....+++..+..+-..+-.-...|..+..+...|.-.+
T Consensus 350 ~ee~~~~~s~~~~k~~~ke~E~q~lr~~-------l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lql 422 (511)
T PF09787_consen 350 REELSRQKSPLQLKLKEKESEIQKLRNQ-------LSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQL 422 (511)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHH-------HHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccH
Confidence 33 444555555554443 332222223346666665555554444555555555555555555
Q ss_pred HHHHHHHh
Q 013685 285 EMLKLEIS 292 (438)
Q Consensus 285 eeLKsEI~ 292 (438)
+-+..++.
T Consensus 423 Erl~~~l~ 430 (511)
T PF09787_consen 423 ERLETQLK 430 (511)
T ss_pred HHHHHHHH
Confidence 55554444
No 119
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.49 E-value=2.6 Score=40.70 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGM-------KAIEAYSS 85 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~-------elee~~~s 85 (438)
..++.-.++.|.+.+++....+..+..+|.++...-......+--+..+.-..+..++.++..+. +....|..
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999988877665444442222222233333444444433 33445555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013685 86 IASELERSRTRINLLEGL 103 (438)
Q Consensus 86 l~~ELee~~~eI~~LE~e 103 (438)
+.-.|.=+.+++.+.+..
T Consensus 86 VarkL~iiE~dLE~~eer 103 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEER 103 (205)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 555555555554444433
No 120
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.37 E-value=1.4 Score=42.41 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHH---HHHHHHHHHchhhHH
Q 013685 198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL---AQAVEDLKANLMDKE 274 (438)
Q Consensus 198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~---~~~Ie~Lka~L~~le 274 (438)
...+=.-|++++.+|++++......+..+.++..+|..|..-+.+...-. .+|+..+... ...+..+++++..++
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~--~eL~k~L~~y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV--EELRKQLKNYEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888999999888888888888888888888887211111 1333333322 235567888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCc
Q 013685 275 TELQNISEENEMLKLEISKRELDTP 299 (438)
Q Consensus 275 ~~l~~L~eEieeLKsEI~~~~~~~~ 299 (438)
..+..|.|+.+.|...+.+.+.++.
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777733
No 121
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.32 E-value=8.3 Score=45.98 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=64.2
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH------HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST------VKIKSAFEQLEQIKHQSGLREVELEAELQKAK 209 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~------~elr~a~E~le~~K~e~~~ri~Ele~eie~~~ 209 (438)
+.......|..+...++..+..++..+.....+..=.+.+.. ..+...+..+++..+..+...++ ..++...
T Consensus 170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se--~~~~~~~ 247 (1109)
T PRK10929 170 LAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAE--RALESTE 247 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445556677777777777777777777766666544333322 22222223333333322222222 1222222
Q ss_pred HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHH
Q 013685 210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM 286 (438)
Q Consensus 210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEiee 286 (438)
... +...+.-.-++...+.|..|...+. ..-.+...+..+-...+..+.....+...+.+++.-
T Consensus 248 ~~~----~~~~~~~~~i~~~~~~N~~Ls~~L~---------~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~ 311 (1109)
T PRK10929 248 LLA----EQSGDLPKSIVAQFKINRELSQALN---------QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQW 311 (1109)
T ss_pred HhH----HhhccCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222235555666777777766 334444444444444455555555555555444433
No 122
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.32 E-value=0.48 Score=46.83 Aligned_cols=128 Identities=25% Similarity=0.330 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 013685 185 EQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVE 264 (438)
Q Consensus 185 E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie 264 (438)
+.+++.+.++..+...++.+.+.....|.+-...-..++.+++.+..+...|..... .+...+.
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~----------------eaee~~~ 64 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQ----------------EAEEEKQ 64 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 356677778888888888888888888888888888888888877777765554443 3333444
Q ss_pred HHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 013685 265 DLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQL 344 (438)
Q Consensus 265 ~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l 344 (438)
+|.............|..++..+... +..|.++..+....+.++..+|
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~--------------------------------i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAE--------------------------------IARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHH------------HHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444343333333333 3344555556666677788888
Q ss_pred HHHHHhhHHHHHHHhh
Q 013685 345 EAAQSANCEAEAELRR 360 (438)
Q Consensus 345 ~a~~~a~~~~eae~~r 360 (438)
..|+.+....-.+|.-
T Consensus 113 ~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 113 EEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776666666533
No 123
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.26 E-value=6.8 Score=44.17 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685 65 AKLSVEALRAEGMKAIEAYSSIASELERSRTRI-------NLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD 137 (438)
Q Consensus 65 ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI-------~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~ 137 (438)
...-|..|-++|+++-...---..-+-++++.+ ..+.+.|.+|+.+..++.. ++..+...+.+.
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~---------il~~Kee~Ek~~ 521 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKS---------ILRDKEETEKLL 521 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH---------HhhhHHHHHHHH
Confidence 344455555555555433222222233333333 3333455555555555552 344444555666
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHH--HH--HhhhhhcHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLE--QI--KHQSGLREVELEAELQKAKSDIE 213 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le--~~--K~e~~~ri~Ele~eie~~~~eLe 213 (438)
-.-|-.+++++.+.+...+.++..+++++.+.-.++. -+..+|-++. ++ ..+..++...+--++..++..|-
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qa----t~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~ 597 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQA----TNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLS 597 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----hhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777788888888877777777665554 3333443331 11 12455555555555555555554
Q ss_pred HHHHhhccHH
Q 013685 214 ELKANLMDKE 223 (438)
Q Consensus 214 ELka~l~d~E 223 (438)
.........|
T Consensus 598 ~~Eq~aarrE 607 (961)
T KOG4673|consen 598 KKEQQAARRE 607 (961)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 124
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.98 E-value=5.2 Score=41.33 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHH
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKH 143 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~e 143 (438)
.....|--+..+++.-+.++.....-.++++.+-..+.....++.-....-+. +...... .-.-...-+.+
T Consensus 6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d------~~~~~~~---~~~~La~lL~~ 76 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGD------PSIPPEK---ENKNLAQLLSE 76 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC------ccCCccc---chhhHHHHHHH
Confidence 33344444555555555555555555555555555555555544432221111 1000000 00011122233
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 223 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E 223 (438)
.+.+-..+..||..|+.+|..+.+++.=+..... +.+.....+.- ...+ ..-+.+-.+|++++..+..|.-.+...-
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la-~~r~~~~~~~~-~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA-RQRVGDEGIGA-RHFP-HEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-hhhhhhccccc-cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554332222110 11111111110 1111 2334455556666666666666666666
Q ss_pred HHhhhhHHhhHHHHHHhh
Q 013685 224 TELQGISEENEGLHMQLD 241 (438)
Q Consensus 224 ~ELq~L~eEre~L~~ei~ 241 (438)
+|.+++.-||+..+.+..
T Consensus 154 DEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 154 DEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655555544
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.92 E-value=5.3 Score=41.06 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAET 167 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ 167 (438)
++-.|.|......++.++..|+..-...+.
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 445566666666666666666655554433
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.89 E-value=5.3 Score=41.01 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=51.2
Q ss_pred HhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHch
Q 013685 191 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL 270 (438)
Q Consensus 191 K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L 270 (438)
...+...++.-..+......+|.-|-+.+.++...++.+.-|++.|..-+.....+++ .|..++..++++..++-+.|
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~--~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR--QLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555677778888888888888888888888888887762222222 45555555555555555444
Q ss_pred hhHHHH
Q 013685 271 MDKETE 276 (438)
Q Consensus 271 ~~le~~ 276 (438)
..-...
T Consensus 293 ~EaQEE 298 (306)
T PF04849_consen 293 HEAQEE 298 (306)
T ss_pred HHHHHH
Confidence 443333
No 127
>PF13514 AAA_27: AAA domain
Probab=94.85 E-value=11 Score=44.65 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHH
Q 013685 254 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLA 306 (438)
Q Consensus 254 ~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~ 306 (438)
..+.........+...+..+..+++.+...+..+..++........-++++.+
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l 504 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEEL 504 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 44555666666777777777777777777777777788777777667777744
No 128
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.82 E-value=10 Score=44.00 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013685 336 RAARMAEQLEAAQSANCEAEAELRRL 361 (438)
Q Consensus 336 ~~~~~~e~l~a~~~a~~~~eae~~rl 361 (438)
+...+..++...+.--..++..+..+
T Consensus 594 ~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 594 RLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333433333334444444333
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.72 E-value=4.3 Score=39.07 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
+-+..++-....+..+...+...|...++.=..|..+|..+... . - -..++-.....++.
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q------------------~-~-s~Qqal~~aK~l~e 67 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ------------------L-K-SLQQALQKAKALEE 67 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H-H-HHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555520 0 0 11233444555666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685 154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 233 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr 233 (438)
|++.|+.-+-.++...+-+.. .-.+++.-+-.+...|..|..+-.++..+.+.++.+-.++ ..++
T Consensus 68 EledLk~~~~~lEE~~~~L~a--------q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL-------~~~~ 132 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLA--------QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL-------ATEK 132 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH-------HHhh
Confidence 676666666665555444433 2233444444555555555555555555555555544433 3345
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685 234 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL 296 (438)
Q Consensus 234 e~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~ 296 (438)
..|+..+. ....=+-..+.-+.+....+..+...++.+..-+.+|+.++.+.+-
T Consensus 133 ~~Lq~Ql~---------~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 133 ATLQRQLC---------EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553 3333334445566666777777777888888888888888877663
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.65 E-value=2.3 Score=38.55 Aligned_cols=71 Identities=30% Similarity=0.410 Sum_probs=44.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
.++..+.-++..+......+...+..+.. .++...+++...+.........+..+|++.+-++..|+.++.
T Consensus 80 ~~~~~~ere~~~~~~~~~~l~~~~~~~~~----~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 80 EQLEELERELASAEEKERQLQKQLKSLEA----KLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444 555566667777777777777888888888888888888763
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.65 E-value=2.5 Score=37.71 Aligned_cols=128 Identities=22% Similarity=0.383 Sum_probs=63.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 013685 145 EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET 224 (438)
Q Consensus 145 ~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ 224 (438)
..++.++.+++..+...+..+...+..... ++......+......|....--....++ .|..++..+..+..
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~----dl~~q~~~a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~~ 73 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLRE----DLESQAKIAQEAQQKYERELVKHAEDIK----ELQQLREELQELQQ 73 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHH
Confidence 346667777777777777777777766666 4444444444444444433333332222 22333344444444
Q ss_pred HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
++..++.+.+..+..+... +.....+.. .|...+..++.++..|..+|.-|=.+|.
T Consensus 74 ~~~~l~~~~~~a~~~l~~~-----e~sw~~qk~-------~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 74 EINELKAEAESAKAELEES-----EASWEEQKE-------QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555444410 011222222 3344444445555556666666666654
No 132
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.56 E-value=7.5 Score=41.20 Aligned_cols=222 Identities=15% Similarity=0.187 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.+-.++...-..+++++.+|..++.+.-+++........+.+.+..++...+.+-.-.+..+......+..-...+..+.
T Consensus 64 ~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t 143 (499)
T COG4372 64 LLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143 (499)
T ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777777776666666655656555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHH
Q 013685 102 GLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIK 181 (438)
Q Consensus 102 ~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr 181 (438)
+.-..|+..+.++. .+..+|..+..++-.+-.+|.....-++++-.+++.+..
T Consensus 144 ~Q~q~lqtrl~~l~-----------------------~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~---- 196 (499)
T COG4372 144 KQAQDLQTRLKTLA-----------------------EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA---- 196 (499)
T ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 55555555555554 245666666666666666666665555555555544221
Q ss_pred HHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 013685 182 SAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ 261 (438)
Q Consensus 182 ~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~ 261 (438)
+|..-...+..-...+..+...+.....-+|....+...+-..|. .....+..-..
T Consensus 197 ---------------~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~---------q~~q~iaar~e 252 (499)
T COG4372 197 ---------------QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQIS---------QKAQQIAARAE 252 (499)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHH
Confidence 011111222222223333333333333444444333333333343 33334444445
Q ss_pred HHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 262 AVEDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 262 ~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
.|..-..+|..++.....+..+...|..-...|
T Consensus 253 ~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y 285 (499)
T COG4372 253 QIRERERQLQRLETAQARLEQEVAQLEAYYQAY 285 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666665544433
No 133
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.56 E-value=8.4 Score=41.77 Aligned_cols=91 Identities=23% Similarity=0.344 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH----HchhhHHHH
Q 013685 201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK----ANLMDKETE 276 (438)
Q Consensus 201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lk----a~L~~le~~ 276 (438)
|+..++.++..+.||...+.-++.+|...-.+-..++..-... .-.-+.+.+++..++..++ ..+.+.+..
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e-----~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~ 559 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE-----LVAQRIEIEKLEKELNDLNLLSKTSILDAEQL 559 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhhccchHhhHHHH
Confidence 6777888888888888888888888777655555444333211 1134456666666666664 345566777
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 013685 277 LQNISEENEMLKLEISKREL 296 (438)
Q Consensus 277 l~~L~eEieeLKsEI~~~~~ 296 (438)
+++..-+++.++-.+..|--
T Consensus 560 vqs~~i~ld~~~~~~n~~r~ 579 (622)
T COG5185 560 VQSTEIKLDELKVDLNRKRY 579 (622)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 88888888888777765543
No 134
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.43 E-value=5.1 Score=38.74 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHHHc
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNND---LRKLAQAVEDLKAN 269 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~e---l~~~~~~Ie~Lka~ 269 (438)
.+.+-|.+.+..|...+..|....+....++.++..+......+.......+...+|.=++.- .......+..++.+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666655555555555444444444333322 23333445555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685 270 LMDKETELQNISEENEMLKLEISKREL 296 (438)
Q Consensus 270 L~~le~~l~~L~eEieeLKsEI~~~~~ 296 (438)
+..+...++.|...+..|+..|..+.+
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554443
No 135
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.41 E-value=12 Score=43.14 Aligned_cols=194 Identities=18% Similarity=0.113 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685 50 QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG 129 (438)
Q Consensus 50 ~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~ 129 (438)
.|..++.-...++..+......-.....+..++.+.++.++.++.+.-..++.-...+ ..+
T Consensus 355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~----ee~--------------- 415 (980)
T KOG0980|consen 355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLV----EEA--------------- 415 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH---------------
Confidence 3444444455555555555555555555555555555555544443333222222111 111
Q ss_pred hhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685 130 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK 209 (438)
Q Consensus 130 ~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~ 209 (438)
...+.....+++.++.-+..|+..=-++-.+|.+.+.+.+.... .+..+++.+..+...+.++..+....+
T Consensus 416 --------e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~-s~~~~~~~~~~L~d~le~~~~~~~~~~ 486 (980)
T KOG0980|consen 416 --------ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ-SIDDVEEENTNLNDQLEELQRAAGRAE 486 (980)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333445566666777777766666666666665554443322 333677777777777777777777777
Q ss_pred HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHchh
Q 013685 210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLM--CQRESQLNNDLRKLAQAVEDLKANLM 271 (438)
Q Consensus 210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~--~~~~~el~~el~~~~~~Ie~Lka~L~ 271 (438)
...++....+..++.||.-+..+-+.|+..+.+... ++.=.++...+...+..+..+..++.
T Consensus 487 ~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~ 550 (980)
T KOG0980|consen 487 TKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREE 550 (980)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 778888888888888888888888888877663221 22334556666666666666666653
No 136
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.37 E-value=16 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK 191 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K 191 (438)
....++|..++..+..+|..+.+.+..+..+++-+..... +..++|+++.+.+
T Consensus 877 l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~-e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 877 LARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE-EAQSEKEELKNER 929 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH-HHHHHHHHHHHHh
Confidence 3455667777777777777777777777766665544332 4445555555444
No 137
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=12 Score=42.44 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHH
Q 013685 68 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 147 (438)
Q Consensus 68 ~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~E 147 (438)
.+..+-..+.+....+.-+..+|+-.-+.+......+.+|-.++.... +..-.|-.+
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekd-----------------------d~nfklm~e 490 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKD-----------------------DKNFKLMSE 490 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hHHHHHHHH
Confidence 334444444555555556666666666666666666666655444433 233334444
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhh
Q 013685 148 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ 227 (438)
Q Consensus 148 ie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq 227 (438)
-..+...+..|+.....++..+.-+...-. -..-.+-.++..-..+.....-+..++..+.-.++..+..-.+....+.
T Consensus 491 ~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~-~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~ 569 (698)
T KOG0978|consen 491 RIKANQKHKLLREEKSKLEEQILTLKASVD-KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE 569 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332222110 1111111222222333444444555555555555555555555544444
Q ss_pred hhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 228 GISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 228 ~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
. |+.... .....+..+...+.++...|+...-.+..+.++++.|+..+....
T Consensus 570 ~-------Lq~~~e---------k~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 570 D-------LQIELE---------KSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred H-------HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 344443 444455556666666666666666777777777777777666443
No 138
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.27 E-value=7.3 Score=39.89 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=15.3
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHH
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
-.|.|......+..++..|+.....
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666665554
No 139
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.24 E-value=7.7 Score=40.08 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALR---------------------AEGMKAIEAYSSIASELER 92 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le---------------------~ei~elee~~~sl~~ELee 92 (438)
|--+...|+.|..++.++-.+++.+..+...++.....+. ..+.+..+....+..++..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777888888887777777666666666555444 5567778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 93 SRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 93 ~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
++.++..+.+++.-|...+....... ..+..... ..+-..|-.+++.++..+.+|+..+...-.+.+|.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~-----~~~~~~~~------~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGD-----EGIGARHF------PHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhh-----cccccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766311 11111111 14555677788888888888888888777777776
Q ss_pred hhhc
Q 013685 173 QIQS 176 (438)
Q Consensus 173 ~~e~ 176 (438)
..++
T Consensus 160 ~~ER 163 (319)
T PF09789_consen 160 VTER 163 (319)
T ss_pred HHHH
Confidence 6644
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.21 E-value=11 Score=42.67 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=37.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
...|.++..++..++..+.++.....+.--.++.++.+...|+..|.
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888888888888888888888888887775
No 141
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=11 Score=41.39 Aligned_cols=228 Identities=18% Similarity=0.249 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
....|+..+..+.+|++-++..+....+...++-+++....+|-+-|.+....+.++.--|++-+.++..++..+.+...
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999988888999999999999999999999999999999999999999999998888887
Q ss_pred HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH
Q 013685 110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ 189 (438)
Q Consensus 110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~ 189 (438)
.......+ +.-++-|.+|..++...+.+.+-..+ ... ++=...-++++
T Consensus 409 ~~ddar~~-----------------pe~~d~i~~le~e~~~y~de~~kaqa----evd-----------rlLeilkeven 456 (654)
T KOG4809|consen 409 IEDDARMN-----------------PEFADQIKQLEKEASYYRDECGKAQA----EVD-----------RLLEILKEVEN 456 (654)
T ss_pred hhHhhhcC-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH----HHH-----------HHHHHHHHHHh
Confidence 66555531 11133344444444443333332222 111 22223445678
Q ss_pred HHhhhhhcHHHHHHHHHHHHHHHHHHHH-hhccHHHHhhh---hHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 013685 190 IKHQSGLREVELEAELQKAKSDIEELKA-NLMDKETELQG---ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED 265 (438)
Q Consensus 190 ~K~e~~~ri~Ele~eie~~~~eLeELka-~l~d~E~ELq~---L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~ 265 (438)
.|+.-.-+|++++-..+.-...+.-++- ...+++.-+|. +..+++.+. ++++-.. +.++-..+++
T Consensus 457 eKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~-------d~sqhlq----~eel~~alek 525 (654)
T KOG4809|consen 457 EKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMA-------DNSQHLQ----IEELMNALEK 525 (654)
T ss_pred hhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-------chHHHHH----HHHHHHHHHH
Confidence 8888899999998777776666555442 22333333333 333333332 2222222 3333345566
Q ss_pred HHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcc
Q 013685 266 LKANLMDKETELQNISEENEMLKLEISKRELDTPN 300 (438)
Q Consensus 266 Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~ 300 (438)
.+.++.....++++...-+.+.+.-+...+.++.+
T Consensus 526 tkQel~~tkarl~stqqslaEke~HL~nLr~errk 560 (654)
T KOG4809|consen 526 TKQELDATKARLASTQQSLAEKEAHLANLRIERRK 560 (654)
T ss_pred HhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776666666666555544444333
No 142
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.99 E-value=16 Score=42.83 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhcccccccCCCCCCCcchhhhhcccccc
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD------TSNANRNLSQNCSGDYDLGQKIKENQDTME 140 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e------I~~~e~~~~~~~~~~~~~~~~~~~~l~~~E 140 (438)
.++..++.+-..++.....-..-|..++.++..|+.+|+.+... |+-++. ...=-+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~------------------k~~~v~ 242 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK------------------KKKWVE 242 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hccccc
Confidence 34444555555555555555555555555555555555555433 333321 112234
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
+..-+.+....+...++++..+..++..+. -+.+-++.|++.+.+...+++.....+......+-++-..++
T Consensus 243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~--------pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~ 314 (1072)
T KOG0979|consen 243 YKKHDREYNAYKQAKDRAKKELRKLEKEIK--------PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLK 314 (1072)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777777777766655533 344556777777888888888888888888888888888888
Q ss_pred cHHHHhhhhHHhhHHHHHHhh
Q 013685 221 DKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~ 241 (438)
+++.++..+...++.|+..-.
T Consensus 315 ~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 315 EIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777665544
No 143
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.94 E-value=5.4 Score=37.12 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
+......+..++..|..++..++.++.+|
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555666666666666666655554
No 144
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=14 Score=41.90 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=74.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 013685 247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 326 (438)
Q Consensus 247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~ 326 (438)
+.-..|..++..+...+..++.....+.-.+..+..+...+-+.++....+.+.. .-.++.-+..-.++.+.+.++
T Consensus 496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~----~~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTL----TQSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888888888888888888888888888777777777666555443322 223455666677888999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHh
Q 013685 327 MEEADKSNRRAARMAEQLEAAQSA 350 (438)
Q Consensus 327 ~e~~~~~~~~~~~~~e~l~a~~~a 350 (438)
-.+++++...--++-.++.+....
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888776543
No 145
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.89 E-value=8.2 Score=39.10 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 29 ETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
+++--|.++..+++.|+++..+-+..++-+.+-|..-+..++.-..++.-+..+..++....+.+...-.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5677899999999999999999999998888888777777777777776666666666555554443333
No 146
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.70 E-value=14 Score=41.18 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 84 SSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..+..+......++..++..|..++..|....
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~ 216 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQ 216 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444445555566666666666665554444
No 147
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.70 E-value=15 Score=41.54 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
..|...+..+++++..+..-++-+.-+|.+|..-+.==+.++...-.
T Consensus 245 ~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvq 291 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQ 291 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45666677777888888888888888888888777666667766663
No 148
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.64 E-value=13 Score=40.73 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.+...+..+..+|.+.......+...+..++..|..+.
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444433333
No 149
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.64 E-value=12 Score=40.06 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..+..+|..++.++..+.....+-.-.++.+..+...|+..+.
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 3455566666666677766666666666777777766666665
No 150
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.63 E-value=8.1 Score=38.18 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 157 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~ 157 (438)
.+......+...-..+...|..+...|..|-..+..++. ...+.....|...+..++.=+..
T Consensus 77 ~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~------------------~~~~~~~~~l~~~l~ea~~mL~e 138 (264)
T PF06008_consen 77 QLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE------------------NGDQLPSEDLQRALAEAQRMLEE 138 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------ccCCCCHHHHHHHHHHHHHHHHH
Confidence 333333333444444444555555555555555555552 01122223344444444554555
Q ss_pred HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhh
Q 013685 158 LRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQG 228 (438)
Q Consensus 158 Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~ 228 (438)
++++ +.....+. -+.++..++..+.+++..+.....+++.-.+.+...|.....+|+|+..-|.+
T Consensus 139 mr~r--~f~~~~~~----Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 139 MRKR--DFTPQRQN----AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHhc--cchhHHHH----HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 12222222 23488889999999999988888888877777787777777777776655554
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.56 E-value=5.2 Score=35.72 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA 53 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~ 53 (438)
.+.+++..+...+......+..++..+.........|+.
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~ 45 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQ 45 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.52 E-value=0.62 Score=44.17 Aligned_cols=121 Identities=26% Similarity=0.392 Sum_probs=44.5
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 218 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~ 218 (438)
..++.+...+..++.|+..+...-...-.++... ...+..++........+|..+...+..++..+..+...
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~--------~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~ 138 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVEL--------NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE 138 (194)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccc--------ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444333333332222 22233333444455555666666666666666666666
Q ss_pred hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685 219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 276 (438)
Q Consensus 219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~ 276 (438)
+.++..-++.|.+|...|+.++. -+..++..+..+=..|=.+.|.....
T Consensus 139 l~ek~k~~e~l~DE~~~L~l~~~---------~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQLQLN---------MLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665 55555555555555555555554443
No 153
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.40 E-value=25 Score=43.01 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALAR----ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~e----E~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
+..--++++++...++.+...+..+..=......|.. ....++-.....+..+...+..+...+.....++.....
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDA 304 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666666666655555555553 355666777778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 96 RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 96 eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
.+..++..+..++.++..+. +++.-....++..++..+..+...++.....+.
T Consensus 305 ~~~~le~~~~~l~~~~~~l~----------------------~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~ 357 (1353)
T TIGR02680 305 RTEALEREADALRTRLEALQ----------------------GSPAYQDAEELERARADAEALQAAAADARQAIR 357 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777 344444555666666666666666665555543
No 154
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.36 E-value=7.2 Score=41.70 Aligned_cols=200 Identities=25% Similarity=0.275 Sum_probs=108.4
Q ss_pred hhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHH---hhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685 133 KENQDTMESKHLEEELSSLKSEVGQLRSALEIAET---KLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK 209 (438)
Q Consensus 133 ~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~---riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~ 209 (438)
..+.-.+.-..|..++.-++-.|.+|.+.--.+.. ++--++. ++.-.|-.++..-.+..-+-++--.+=.+..
T Consensus 209 ~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnl----qLvhR~h~LEEq~reqElraeE~l~Ee~rrh 284 (502)
T KOG0982|consen 209 LVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENL----QLVHRYHMLEEQRREQELRAEESLSEEERRH 284 (502)
T ss_pred hhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33444555566777888888877777663222221 1111122 3333333333333333333344444445566
Q ss_pred HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHH
Q 013685 210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL 289 (438)
Q Consensus 210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKs 289 (438)
.+|.-+++++..++ ++.|++.+. .+..+--.+++.+.+|++...-+....+.....++.+.-
T Consensus 285 rEil~k~eReasle---------~Enlqmr~q---------qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrl 346 (502)
T KOG0982|consen 285 REILIKKEREASLE---------KENLQMRDQ---------QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL 346 (502)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 66666777666555 344556665 677777777777888888888888888888888888888
Q ss_pred HHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH------HHhh-HHHHHHHhhhh
Q 013685 290 EISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAA------QSAN-CEAEAELRRLK 362 (438)
Q Consensus 290 EI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~------~~a~-~~~eae~~rl~ 362 (438)
+++.-.-..-.|++-+.. ...-+-+-+| ++|++-++--.+-+. .|.++ ..|+ .+|+.|++|||
T Consensus 347 ql~~eq~l~~rm~d~Lrr-fq~ekeatqE-------Lieelrkelehlr~~--kl~~a~p~rgrsSaRe~eleqevkrLr 416 (502)
T KOG0982|consen 347 QLICEQKLRVRMNDILRR-FQEEKEATQE-------LIEELRKELEHLRRR--KLVLANPVRGRSSAREIELEQEVKRLR 416 (502)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhHHHHH-------HHHHHHHHHHHHHHH--HHHhhccccCchhHHHHHHHHHHHHhc
Confidence 777544333334443332 2222222222 344444443333221 11111 1233 46999999998
Q ss_pred hc
Q 013685 363 VQ 364 (438)
Q Consensus 363 vq 364 (438)
--
T Consensus 417 q~ 418 (502)
T KOG0982|consen 417 QP 418 (502)
T ss_pred cc
Confidence 53
No 155
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.36 E-value=22 Score=42.24 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
..++.++..+.+....+..+...+..+...+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~ 808 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALA 808 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665555554444
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=19 Score=41.50 Aligned_cols=50 Identities=30% Similarity=0.300 Sum_probs=32.3
Q ss_pred HhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 8 AQTKNAESAHLEL----QSLKGNLIETISLMENMKNQLRESKESETQAQALARE 57 (438)
Q Consensus 8 ~~~~~~E~a~~EL----e~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE 57 (438)
.+++.++..+.++ +.++.-|.+.+..+++++.....+.-+.......+..
T Consensus 643 ~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~ 696 (970)
T KOG0946|consen 643 EQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD 696 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444 5566777777888888887777777666666665533
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.26 E-value=21 Score=41.91 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
|...+.+..+.......+...+.+|..++..... -+.+|..+...+.+.+...-+-+
T Consensus 243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~-----------------------~~eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 243 YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIED-----------------------KKEELESEKKETRSKISQKQREL 299 (1072)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------------hhhhHHhHHHhHHHHHHHHHHHH
Confidence 4555556666666666666666666665544442 22233344555555555555555
Q ss_pred HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 163 EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 163 e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
..+..++++...... +++...+...+....+..+.......|.+.+..|..++..+
T Consensus 300 ~e~~~k~~~~~ek~~-~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 300 NEALAKVQEKFEKLK-EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555444333111 22223333333333333333333444444444444444433
No 158
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.26 E-value=8.2 Score=37.12 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=16.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.++.++..++-+-..|..++...+.+..+++.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555444
No 159
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=17 Score=40.29 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-------RETLLQLETAKLSVEALRAEGMKAIEAYS 84 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------eE~~~qLE~ae~~Ie~le~ei~elee~~~ 84 (438)
..++.+++.++.+|.+.-..++.. ..+..+|-.|= .-+..+++.++...+..+.++....+.+-
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~-------t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQT-------TEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777666655544444 33444443333 22555555555555555555555554443
No 160
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.10 E-value=16 Score=40.10 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
..+..+-.....+...+..+.........++..+.-.+.+|++
T Consensus 161 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 161 KAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444444455555544443
No 161
>PRK10698 phage shock protein PspA; Provisional
Probab=93.05 E-value=9.4 Score=37.23 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=41.3
Q ss_pred HHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 190 IKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 190 ~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.|..+...+..++.++......++.|+..+..++..|...+..+..|.....
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888888888888888888888876665
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.74 E-value=4.3 Score=36.22 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q 013685 150 SLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 150 ~lk~EI~~Les~Ie~aE~riqE 171 (438)
.....+..|+..+..+..+|+-
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666654
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=1.6 Score=48.26 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685 252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 288 (438)
Q Consensus 252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK 288 (438)
...++..++.+|..|+-.|+....+...|..++..++
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666778888888888888888888877777776
No 164
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.62 E-value=16 Score=38.88 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
.+..+..+|.++++.|..+..++.+.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555555555555544
No 165
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.53 E-value=17 Score=38.86 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 81 EAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 81 e~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
..+..+..++...+.++..++..+..|...+.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555555555555555444
No 166
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.38 E-value=4.7 Score=37.55 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHH
Q 013685 252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE 290 (438)
Q Consensus 252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsE 290 (438)
+..++...+..+..++..+..+....+.+...+..++.-
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 149 LQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555555444444443
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.30 E-value=1.3 Score=45.31 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
+..+++.+..++.++.+++..+..++..+.. -......+..+..++..++.+...+..+|..++.+-..+..++..++.
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp ------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888998888888888865441 111223333444444444444444444444444444444444444444
Q ss_pred HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
+...+.. ++...=...+.+.-++.....+...+...+...-..+
T Consensus 86 e~~~l~~----------------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 86 ELEELDE----------------EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333331 0011122444455555555555555555555444444
No 168
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.95 E-value=9.4 Score=37.65 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
+++.+..+|-.....+++-..-|.++..+....+........+|..+..+|..++.-|..+..+++.....+..+-.++.
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555555555566665555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 013685 99 LLEGLVSKLEAD 110 (438)
Q Consensus 99 ~LE~ei~kLe~e 110 (438)
.|...|.++..+
T Consensus 92 ~Lk~~in~~R~e 103 (230)
T PF10146_consen 92 PLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 169
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.81 E-value=13 Score=36.43 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
+..+...+..++.+...|+.+|+.+=.--..........++..+.....+......++..+...|...+..+.+++..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555432200000111112344444444444444444455555555555555555544444
Q ss_pred cHHHHhh
Q 013685 221 DKETELQ 227 (438)
Q Consensus 221 d~E~ELq 227 (438)
.....|.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
Confidence 4444443
No 170
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.80 E-value=13 Score=35.78 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHchhhHH
Q 013685 248 RESQLNNDLRKLAQAVEDLKANLMDKE 274 (438)
Q Consensus 248 ~~~el~~el~~~~~~Ie~Lka~L~~le 274 (438)
+-.++..++..+..+|..|...|..++
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666666666666555544
No 171
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.75 E-value=14 Score=36.22 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013685 19 ELQSLKGNLIETISLMENMKNQ--------LRESKESETQAQALA-RETLLQLETAKLSVEALRAEGMKAIEAYSSI-AS 88 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~q--------L~dl~~e~~~A~~~~-eE~~~qLE~ae~~Ie~le~ei~elee~~~sl-~~ 88 (438)
-|..+.+.+......++.-..+ +..+.+.+..+...+ .++..+.+..+.--..++..+..+....... ..
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~ 85 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISE 85 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666544332 233333333333333 3455555555555556666666666555433 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 89 ELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 89 ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
..+.+...+..|...+..|+..|..-.. .-...+.....++..+|..|...++.-...
T Consensus 86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~----------------------~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~ 143 (247)
T PF06705_consen 86 KQEQLQSRLDSLNDRIEALEEEIQEEKE----------------------ERPQDIEELNQELVRELNELQEAFENERNE 143 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777776666552 222334555556666777776666643333
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHh-hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhh-hHHhhHHHHHHhh
Q 013685 169 LNEGQIQSTVKIKSAFEQLEQIKH-QSGLREVELEAELQKAKSDIEELKANLMDKETELQG-ISEENEGLHMQLD 241 (438)
Q Consensus 169 iqEe~~e~~~elr~a~E~le~~K~-e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~-L~eEre~L~~ei~ 241 (438)
-.+-. ..|...+..+..... ........-+..+..+...|+++...-..-...++. +.+|-..|+..|.
T Consensus 144 R~erE----~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 144 REERE----ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22221 244444444433332 333333444667778888888888888888888888 8888888888887
No 172
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.60 E-value=15 Score=36.17 Aligned_cols=98 Identities=21% Similarity=0.240 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA------------RETLLQLETAKLSVEALRAEGMKA 79 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~------------eE~~~qLE~ae~~Ie~le~ei~el 79 (438)
+...+.+++..++..+..+...-.-+..++.++.......+.+. .+.+.+...++..+..+...+..+
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554444444 113444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 80 IEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 80 ee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.+....+...+..+..+|..++.....+.+
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444443
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.38 E-value=8.7 Score=37.88 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
.+|........+..++...+..++.+..-+..|..+ +..+....-..|.....||..++..+.+...+..+....|.
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555444444444422 33333333344444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhccc
Q 013685 99 LLEGLVSKLEADTSNANR 116 (438)
Q Consensus 99 ~LE~ei~kLe~eI~~~e~ 116 (438)
.+.+++..|...|..+..
T Consensus 85 r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555543
No 174
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.10 E-value=32 Score=39.11 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEA 330 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~ 330 (438)
.+..++..++....++++.+.+++.+...+..-++++++.+.+.- ..+-..|+.-+..-+..++.+.+-+
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~n----------rlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKEN----------RLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566677777788888888888888888888888888888664322 2223456666666666666655555
Q ss_pred HHhhHHHH-----------HHHHHHHHHHHhhHHHHHHH
Q 013685 331 DKSNRRAA-----------RMAEQLEAAQSANCEAEAEL 358 (438)
Q Consensus 331 ~~~~~~~~-----------~~~e~l~a~~~a~~~~eae~ 358 (438)
-+--.-+| .|--+|.||+.-++++=.++
T Consensus 597 ~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 597 SKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33322222 23456667776666665544
No 175
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.89 E-value=4.9 Score=40.65 Aligned_cols=90 Identities=27% Similarity=0.305 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685 198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 277 (438)
Q Consensus 198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l 277 (438)
+..|++.|.+.+..+++-+.....+..|.+.|.+..+.|...-. -+.+++.-...-|.-+.++|......+
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq---------Klshdlq~Ke~qv~~lEgQl~s~Kkqi 111 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ---------KLSHDLQVKESQVNFLEGQLNSCKKQI 111 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH---------HhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 56688888888888888888888888888888888888776665 788888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 013685 278 QNISEENEMLKLEISKREL 296 (438)
Q Consensus 278 ~~L~eEieeLKsEI~~~~~ 296 (438)
+.|..++.-+++++.+-..
T Consensus 112 e~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 112 EKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998886554
No 176
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.88 E-value=10 Score=33.80 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETL---LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 96 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~---~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e 96 (438)
++.+...|.+.+..+..++.++..+..++..+...+-.+. ..+......+..|+.++..+...|..+-.=+-+...+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3444445555555555555555555555555555553322 2234445556666666666666666665555555555
Q ss_pred HHHHHHHHHHHHH
Q 013685 97 INLLEGLVSKLEA 109 (438)
Q Consensus 97 I~~LE~ei~kLe~ 109 (438)
+..|..+|..+..
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 177
>PRK10698 phage shock protein PspA; Provisional
Probab=90.85 E-value=17 Score=35.47 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685 340 MAEQLEAAQSANCEAEAELRRLKVQ 364 (438)
Q Consensus 340 ~~e~l~a~~~a~~~~eae~~rl~vq 364 (438)
+..++...+. .+..+.||-+||-+
T Consensus 193 l~~e~~~le~-~~~ve~ELa~LK~~ 216 (222)
T PRK10698 193 LDQQFAELKA-DDEISEQLAALKAK 216 (222)
T ss_pred HHHHHHHhhc-cchHHHHHHHHHHH
Confidence 4445555533 45678888777754
No 178
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=90.80 E-value=30 Score=38.21 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD 137 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~ 137 (438)
....+.+++..+...+.++..+...++.+...=.+...+|..--+.-.+|..++..-+ .+-
T Consensus 102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~-------------------~~~ 162 (570)
T COG4477 102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANR-------------------HQY 162 (570)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-------------------hhh
Confidence 4555555566666666666666666666666666666666666677777777666555 344
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHH------HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSAL------EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD 211 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~I------e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~e 211 (438)
|+-+|.|..+++.+.+++.+...-= ++.+.= +...+.+..|+...+++=....+... ++=.+|.+++.-
T Consensus 163 Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl--~~~ee~~~~L~~~~e~IP~L~~e~~~---~lP~ql~~Lk~G 237 (570)
T COG4477 163 GEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVL--EEAEEHMIALRSIMERIPSLLAELQT---ELPGQLQDLKAG 237 (570)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHH
Confidence 6677777777777777777655421 111110 01111112333333333333332222 222344555555
Q ss_pred HHHHHHh-----hccHHHHhhhhHHhhHHHHHHhh
Q 013685 212 IEELKAN-----LMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 212 LeELka~-----l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..+++.. -++++.+++.|++........+.
T Consensus 238 yr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~ 272 (570)
T COG4477 238 YRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLT 272 (570)
T ss_pred HHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHH
Confidence 5555543 24555666666666655544443
No 179
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.80 E-value=36 Score=39.14 Aligned_cols=236 Identities=21% Similarity=0.248 Sum_probs=125.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQA-QALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A-~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
.+--+..|-...++.+.++-+..+++..++.+.+...... ..-.+++.....+++=-+.+|.+.+.+..+ .|
T Consensus 285 ~~~la~~Ee~~a~E~i~e~tSE~kdlni~~~d~~~~kd~qk~~n~~kta~KVrt~KYLLgELkaLVaeq~D------sE- 357 (861)
T PF15254_consen 285 PAFLASNEEKCAEEQIEEATSEGKDLNIQVRDAKTVKDVQKAKNPNKTAEKVRTLKYLLGELKALVAEQED------SE- 357 (861)
T ss_pred ccccccccccchHHHhhhccchhhhcccccCchhhhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHhccch------HH-
Confidence 3344456667778888888888888887777765222211 122367888888888888777776665531 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 91 ERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 91 ee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
| ...|.++++=|.-+-+- +++ ..=+-+|-=-+..+++|..+|+.+|..+...+.
T Consensus 358 ------~---qRLitEvE~cislLPav-----~g~------------tniq~EIALA~QplrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 358 ------V---QRLITEVEACISLLPAV-----SGS------------TNIQVEIALAMQPLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred ------H---HHHHHHHHHHHHhhhhh-----hcc------------ccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 1 12233344333333321 111 112223334467899999999999999999887
Q ss_pred hhh-hhcH---HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh
Q 013685 171 EGQ-IQST---VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC 246 (438)
Q Consensus 171 Ee~-~e~~---~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~ 246 (438)
|-. .++. .+..=.+..++..... |+.+|++.-..++-|+..-.++-.-+.++++||..|...+.
T Consensus 412 eqe~~~k~~~~~~~n~El~sLqSlN~~-------Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~----- 479 (861)
T PF15254_consen 412 EQEKAEKTSGSQDCNLELFSLQSLNMS-------LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQ----- 479 (861)
T ss_pred HHHhhcccCCCcccchhhHHHHHHHHH-------HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 732 2111 1111112222333322 44445555555555555555555666677777777776665
Q ss_pred hhhhhhHHHHHHHHHHHHHHH-------HchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 247 QRESQLNNDLRKLAQAVEDLK-------ANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 247 ~~~~el~~el~~~~~~Ie~Lk-------a~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
.++.++..-....+.++.+++ .++..+.-.+....-||..|.-.|.
T Consensus 480 ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlr 532 (861)
T PF15254_consen 480 EKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLR 532 (861)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHH
Confidence 222333333333333333333 3333444444444444444444444
No 180
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.62 E-value=16 Score=34.88 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=41.3
Q ss_pred HHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 189 QIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 189 ~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..+..+...+..+...+......+..|+..+..++..|..++.++..|.....
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777788888888888888888888888888888888887776654
No 181
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.34 E-value=20 Score=35.44 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
+...++.+...|....+.+.-.+.++..++.........++.+..+....-.....+......+-..-..+...+..+..
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445554444444444445555444444444444444444444444444444444444444444455555555
Q ss_pred HHHHHHHHHHHHHH
Q 013685 96 RINLLEGLVSKLEA 109 (438)
Q Consensus 96 eI~~LE~ei~kLe~ 109 (438)
.|..+-..+..+..
T Consensus 102 ~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 102 NIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHhCc
Confidence 55555555544444
No 182
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.34 E-value=37 Score=38.50 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNI 280 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L 280 (438)
....++..+.++++..+.....+-.+++..
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555433
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.98 E-value=22 Score=40.59 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN 135 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~ 135 (438)
.++..+...++..++.--.++..+++.+..++..-+.+..++..+.+.-+.|...+..+-... + .+.+.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~----------~~~P~ 629 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-N----------SQLPV 629 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------ccCCC
Confidence 334444444444444444444444444444444444444444444444444444444333110 0 00012
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
+...| .+.+.|+..++..+..+..+|+.+..+++-
T Consensus 630 LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 630 LSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 667777777777777777777777666543
No 184
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.98 E-value=30 Score=36.90 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.-+....++.....|....-+|--....|.+-...+..+|+++.-|..+-..|...+.
T Consensus 226 ~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 226 AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666666666666666667777666666666665554
No 185
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.95 E-value=20 Score=34.86 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE--------------LERSRTRINL 99 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E--------------Lee~~~eI~~ 99 (438)
|.=++.+|.++..++++-...+=.+..++..++..+...+..+..+...+.+-..+ .+-++..|..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 44555555555555555555554455555555555555555555554444443333 3333344444
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 100 LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 100 LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
++.++..|...+....+....+...+..++.........+.+..|..+++.++.+|...+.+.+.--.-+..+
T Consensus 92 le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 92 LEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555555444432100000111111121222222245677888889999999888888887666555543
No 186
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=89.94 E-value=28 Score=36.60 Aligned_cols=114 Identities=19% Similarity=0.311 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh--hhhhhhHHH
Q 013685 178 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC--QRESQLNND 255 (438)
Q Consensus 178 ~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~--~~~~el~~e 255 (438)
.-++..+......+..+.-.......+|...+..|..|+..+.+++.=|+-..-.-+. +..=..-.-| .-.+.|..|
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~-R~~RP~vElcrD~~q~~L~~E 325 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN-RTQRPNVELCRDPPQYGLIEE 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-HhcCCchHHHHhhHHHHHHHH
Confidence 5666667777777777777777777777777777777777777777666533222111 0000000111 134577788
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+..+...+..|..+|...+..+..|..-...|..+|.
T Consensus 326 v~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 326 VKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888777777777665
No 187
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.94 E-value=6.7 Score=34.40 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 186 ~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.++..++++..+...|+..|+..+....+|-..=.++++-++.|..++..+...+.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~ 61 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA 61 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544444444444444444444444443
No 188
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.80 E-value=42 Score=38.41 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 013685 32 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS-------RTRINLLEGLV 104 (438)
Q Consensus 32 ~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~-------~~eI~~LE~ei 104 (438)
..=..+..++.++..+..++...+..+..+.+++......+..+...++-.+..++.+|.+. =.+...||++-
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33344445555555555555555555555555555555555555555555555555555444 44566666666
Q ss_pred HHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685 105 SKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 105 ~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a 165 (438)
-.|++.+..+..| -=++.-|+-+|..+..|+..|.+.++.+
T Consensus 107 islQKqvs~Lk~s--------------------QvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 107 ISLQKQVSVLKQS--------------------QVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777641 1134445555555555555555555543
No 189
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=89.42 E-value=22 Score=34.65 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
+.......+.....|...-..+..+...|..+... +.+..+...+-.+++|..+|....+.+..+...+
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-----------~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l 101 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-----------DAPSKEILANLSLEELEQRLSQEQAQLQELQEQL 101 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-----------ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666531 0011113335567788888888888888888888
Q ss_pred HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHH--HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 163 EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD--IEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 163 e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~e--LeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
-...+.+..... .-+.+.....+...++.++...|...... -.--.+...-+.+|+.-+.-++..|..++
T Consensus 102 ~~~~~~l~~~~~--------~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 102 QQENSQLIEIQT--------RPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777666544 22233333333333333333333321000 01113445556666666666666666666
Q ss_pred h
Q 013685 241 D 241 (438)
Q Consensus 241 ~ 241 (438)
.
T Consensus 174 ~ 174 (240)
T PF12795_consen 174 L 174 (240)
T ss_pred H
Confidence 5
No 190
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.41 E-value=49 Score=38.59 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.++..|..++..+..++-++..-.-..++-+.+...|..++..+.+
T Consensus 355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555554444444444444443
No 191
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.38 E-value=20 Score=34.19 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEG 76 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei 76 (438)
++..|.++...+..++..+..+......+..++..+...+..+....
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555444443
No 192
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.05 E-value=3.2 Score=36.35 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=52.0
Q ss_pred HHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHH
Q 013685 211 DIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE 290 (438)
Q Consensus 211 eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsE 290 (438)
+-+.|.+.-+++..-|.+|....+..+..+. +|..+.+.+...+..|.++......+...|..+|.++...
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~---------eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQG---------ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888 8888888888888888888888888888777777777777
Q ss_pred Hhh
Q 013685 291 ISK 293 (438)
Q Consensus 291 I~~ 293 (438)
+..
T Consensus 74 le~ 76 (107)
T PF09304_consen 74 LED 76 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 193
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.01 E-value=19 Score=33.44 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
++......+......++.+..++.++.................+...+..+..+......+..++..+..++.+.+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444555555555555555555555555555544555555555
Q ss_pred HHHHHHHHHHHH
Q 013685 99 LLEGLVSKLEAD 110 (438)
Q Consensus 99 ~LE~ei~kLe~e 110 (438)
.+...+..+...
T Consensus 162 ~~~~~~~~~~~~ 173 (191)
T PF04156_consen 162 ELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 194
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.95 E-value=2.6 Score=35.96 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013685 40 QLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS 119 (438)
Q Consensus 40 qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~ 119 (438)
++-++..++..+...++.+..+...+...|..+...+ +....+..++..+..+|..++..+..++..+..+-..+|
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555555555555555444 356677777888888888888888888888887776555
Q ss_pred cC
Q 013685 120 QN 121 (438)
Q Consensus 120 ~~ 121 (438)
|.
T Consensus 106 Ni 107 (108)
T PF02403_consen 106 NI 107 (108)
T ss_dssp --
T ss_pred CC
Confidence 53
No 195
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.94 E-value=2.8 Score=38.74 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
+..++.++.+++.++..|...+..|..++..+.+ ..-..+|...|..++.+|..++++|
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~---------------------~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS---------------------EPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555553 1223456677777777777777777
Q ss_pred HHHHH
Q 013685 163 EIAET 167 (438)
Q Consensus 163 e~aE~ 167 (438)
..+..
T Consensus 133 ~~l~~ 137 (169)
T PF07106_consen 133 EKLRS 137 (169)
T ss_pred HHHHh
Confidence 76665
No 196
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.91 E-value=17 Score=32.76 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
+.+.+...+..+...+......+.-++.++..++.+...+......+..++..+...+.....++.++...+..+..
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t--- 129 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT--- 129 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44555555555555555555556666666655555555555555555555555555555555554444433333332
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013685 92 RSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 92 e~~~eI~~LE~ei~kLe~e 110 (438)
+...++...+-++.+|...
T Consensus 130 q~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555443
No 197
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.89 E-value=40 Score=36.85 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA---RETLLQLETAKLSVEALRAEGMKAIEAYSSIASE 89 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~---eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E 89 (438)
.+.+.+++.-..++|.-+.+.+++++.|+..-.-+..+...+. +++...|+.+.-.++.|...+-.-.-.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le------- 404 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE------- 404 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH-------
Confidence 3444444444444444444444444444444333333333333 334444554444444444443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 90 LERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..+.+.+|++.+.++..-+.+++
T Consensus 405 ---aq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 405 ---AQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 23445556666665555544444
No 198
>PF13166 AAA_13: AAA domain
Probab=88.87 E-value=44 Score=37.34 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+..+..-+..+...|......+.....+++..
T Consensus 365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 365 IDELNSIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444443
No 199
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=88.56 E-value=2.3 Score=35.84 Aligned_cols=66 Identities=26% Similarity=0.454 Sum_probs=51.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 223 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E 223 (438)
+..+|+.+...|.+++.+|+..+.++....+.- +- =..++.++..++..+...|
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~--e~------------------------R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSP--EA------------------------RRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCCh--HH------------------------HHHHHHHHHHHHHHhhccH
Confidence 457899999999999999999999998766622 11 1133377888889999999
Q ss_pred HHhhhhHHhhHH
Q 013685 224 TELQGISEENEG 235 (438)
Q Consensus 224 ~ELq~L~eEre~ 235 (438)
.+|+.|..+|..
T Consensus 57 ~eL~~LrkENrK 68 (85)
T PF15188_consen 57 KELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHhhhh
Confidence 999999998853
No 200
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.54 E-value=51 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=26.0
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
.--.|...+..++..++.-|.+++.+++.-...++
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556777778888888888888888887666555
No 201
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.44 E-value=17 Score=36.01 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 75 EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 75 ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+....++.+.++..+..++......|.+++.+|......+.
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 33333333333333333333333444444444444443333
No 202
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.40 E-value=33 Score=35.29 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL 99 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~ 99 (438)
+..++..|.+++.....+=.-..+|..+.+...-.++-+.-.|++++.++-.+..++.+...+++......+.+..++..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444444443333333344444444444444444444443333333333334444444444
Q ss_pred HHHHHHHHHHHhh
Q 013685 100 LEGLVSKLEADTS 112 (438)
Q Consensus 100 LE~ei~kLe~eI~ 112 (438)
|.+.|.....-|.
T Consensus 159 Lre~L~~rdeli~ 171 (302)
T PF09738_consen 159 LREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 203
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.24 E-value=26 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 60 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 60 ~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.+|.++..+|...-.+|..+...+...+..|......+..+.
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444444444444444444333333333
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.23 E-value=22 Score=35.19 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhccC
Q 013685 329 EADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG 382 (438)
Q Consensus 329 ~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~~g 382 (438)
++..-...++++.+.-.....-...|..++... .+.+.+|......|++++
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a---r~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEA---REDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 333444444555544444444444444443332 244566666666666654
No 205
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.18 E-value=27 Score=34.14 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
+..+..++..+..+...+..+..++...+.++..+...+.....
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444443333333
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.03 E-value=35 Score=35.19 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685 198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 277 (438)
Q Consensus 198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l 277 (438)
+.++-.++-..+..+..|...+..+..++....++...|...|- .+..+....-.+-++|...|..-...-
T Consensus 201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv---------dlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV---------DLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44556666667777777777777777777777777777777777 677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 013685 278 QNISEENEMLKLEISKRELDTPNMNSNLAAEVEAAR 313 (438)
Q Consensus 278 ~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~ 313 (438)
..|..++.+|+.-.. |..+++..|+
T Consensus 272 ~~L~aEL~elqdkY~-----------E~~~mL~EaQ 296 (306)
T PF04849_consen 272 RQLQAELQELQDKYA-----------ECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 777777777766554 6666665554
No 207
>PRK11281 hypothetical protein; Provisional
Probab=87.67 E-value=72 Score=38.42 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 291 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI 291 (438)
.+-..+..+-.+++.+..+-...+.-++++......++.++
T Consensus 289 ~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 289 QLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 208
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=56 Score=37.12 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=8.4
Q ss_pred HHHHHHHhhccHHHHhh
Q 013685 211 DIEELKANLMDKETELQ 227 (438)
Q Consensus 211 eLeELka~l~d~E~ELq 227 (438)
.++++...+++.-.++.
T Consensus 252 el~~l~~a~~q~~ee~~ 268 (716)
T KOG4593|consen 252 ELEELERALSQLREELA 268 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555555
No 209
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.48 E-value=6.5 Score=38.87 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 36 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 36 elr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
+++..+.+|+.-....++..+++..+++.++++++.++.++..++-+...+...+..+-+++..|....++|+..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 566666666666666666666666667777777766666666666666666666666666666666666666544
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=6.7 Score=43.62 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 68 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 68 ~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.|..++..+..++.++..|..++++.+..|..|+.++..+..
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444433333333
No 211
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.31 E-value=12 Score=36.22 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.++..+..+...+.+++.++..+..+-. ....++. ..+......+.++...+..+..++..+..++..|+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~-------~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQ-------QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666655554322 2222233 33333444455566666666677777777777777
Q ss_pred HHHHHHHHHh
Q 013685 102 GLVSKLEADT 111 (438)
Q Consensus 102 ~ei~kLe~eI 111 (438)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (206)
T PRK10884 160 LQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHH
Confidence 7766666543
No 212
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.26 E-value=72 Score=37.97 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=6.0
Q ss_pred ccCCC--CCCCc
Q 013685 119 SQNCS--GDYDL 128 (438)
Q Consensus 119 ~~~~~--~~~~~ 128 (438)
|.||| ++.+-
T Consensus 503 GePCPVCGS~~H 514 (1047)
T PRK10246 503 GQPCPLCGSTSH 514 (1047)
T ss_pred CCCcCCCCcccC
Confidence 56777 55543
No 213
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.24 E-value=7.7 Score=39.77 Aligned_cols=85 Identities=25% Similarity=0.372 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHH
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 278 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~ 278 (438)
..+..++..++.+..++.+.+..++.+-..+..+...|..+.. .+..+-...-...+.+..++.....+++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~---------~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE---------ELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333333333333 3333333334444445555555555555
Q ss_pred HHHHHHHHHHHHHh
Q 013685 279 NISEENEMLKLEIS 292 (438)
Q Consensus 279 ~L~eEieeLKsEI~ 292 (438)
++..++.-...++.
T Consensus 117 sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 117 SLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544444
No 214
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=86.74 E-value=0.81 Score=47.18 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 97 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI 97 (438)
..|-.++++|..++..+..+...+..+...+......+..+...+-.....|..+...+..++..+.++...+..+...|
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l 107 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL 107 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence 34555666666666666666666555555555444444444444444444444444444444444444444333333333
Q ss_pred HHHHHHHHHHHHH
Q 013685 98 NLLEGLVSKLEAD 110 (438)
Q Consensus 98 ~~LE~ei~kLe~e 110 (438)
......|..|+..
T Consensus 108 s~h~ssIS~Lqs~ 120 (326)
T PF04582_consen 108 SDHSSSISDLQSS 120 (326)
T ss_dssp ----------HHH
T ss_pred hhhhhhHHHHHHh
Confidence 3333333333333
No 215
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.49 E-value=43 Score=34.60 Aligned_cols=231 Identities=23% Similarity=0.249 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHH
Q 013685 70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS 149 (438)
Q Consensus 70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie 149 (438)
+.+...+..+...+..+..+++-.+.+...|..++..|...-..+.. . .|-.+.--.|.|-..|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~------------~---aEqEEE~isN~LlKkl~ 87 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA------------K---AEQEEEFISNTLLKKLQ 87 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHHHHHHHH
Confidence 45556666677778888888888888888888888888876555542 1 11222334566777777
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHH-HHHHHHHHHHhhccHHHHhhh
Q 013685 150 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK-AKSDIEELKANLMDKETELQG 228 (438)
Q Consensus 150 ~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~-~~~eLeELka~l~d~E~ELq~ 228 (438)
.++.+-+.|=-.++.=+..+ |..+...+.+|...|. +++..|+. ...-+..|...+..++.+...
T Consensus 88 ~l~keKe~L~~~~e~EEE~l-------tn~L~rkl~qLr~EK~-------~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 88 QLKKEKETLALKYEQEEEFL-------TNDLSRKLNQLRQEKV-------ELENQLEQEQEYLVNKLQKKIERLEKEKSA 153 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776655554322222 2344444444444443 33333333 223344444444444444444
Q ss_pred hHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 013685 229 ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAE 308 (438)
Q Consensus 229 L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~ 308 (438)
+...-+.|..+.- .-|+.|..+ ...=|++|-. ++..|..+...|...+..--++ +.-+...+--
T Consensus 154 ~q~~le~Lr~EKV-----dlEn~LE~E---QE~lvN~L~K-------qm~~l~~eKr~Lq~~l~~~~s~-~~s~~d~~~~ 217 (310)
T PF09755_consen 154 KQEELERLRREKV-----DLENTLEQE---QEALVNRLWK-------QMDKLEAEKRRLQEKLEQPVSA-PPSPRDTVNV 217 (310)
T ss_pred hHHHHHHHHHHHH-----hHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHccccCC-CCCcchHHhh
Confidence 4444444443332 111122222 2223444444 4444444555555555542222 1111211100
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 013685 309 VEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 353 (438)
Q Consensus 309 ~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~ 353 (438)
+-..+... .++-++..-...++||..||-+++....+
T Consensus 218 -----~~~~Dt~e---~~~shI~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 218 -----SEENDTAE---RLSSHIRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred -----cccCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112 24455666667788999999999886654
No 216
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.70 E-value=36 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 51 AQALARETLLQLE-TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 51 A~~~~eE~~~qLE-~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
....+++.+-+|. .++..-..=+..+..+..-..++..-+...+..+..|-.++.+.-..|..-+
T Consensus 196 WklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sRE 261 (359)
T PF10498_consen 196 WKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESRE 261 (359)
T ss_pred HHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455553 2223333445555555555555555555555555555555555444444444
No 217
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.62 E-value=71 Score=36.30 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC--CCCCCCcchhhhhcccccchHHHHHHHHhhHHHHH
Q 013685 79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQN--CSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVG 156 (438)
Q Consensus 79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~--~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~ 156 (438)
+.+.+..+.--+++++.+.++.-.++..+...|..+...++.+ ++..... ....+......++...|..++.+..
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~---D~~dlsl~kLeelr~~L~~L~~ek~ 177 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIA---DESDLSLEKLEELREHLNELQKEKS 177 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccc---CcccccHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444444444444444444322222 1111111 1113334566677777777777766
Q ss_pred HHHHHHHHHHHhhhhhhhhcHHHHH
Q 013685 157 QLRSALEIAETKLNEGQIQSTVKIK 181 (438)
Q Consensus 157 ~Les~Ie~aE~riqEe~~e~~~elr 181 (438)
.--..+......|..+...+..+..
T Consensus 178 ~Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 178 DRLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6555666666666655554443444
No 218
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=85.46 E-value=8.7 Score=32.02 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-C---CCCCCCcchhhhhcccccchHHHHHHHHhhHHH
Q 013685 79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ-N---CSGDYDLGQKIKENQDTMESKHLEEELSSLKSE 154 (438)
Q Consensus 79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~-~---~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~E 154 (438)
+...+..+..++..+...+..++..+..+..-+..+....+. + ..|+++...+ .++=++.|+..+..+..+
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~-----~~~~~~~L~~~~~~~~~~ 77 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQD-----KEEAIEELEERIEKLEKE 77 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEE-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777776666555555431111 1 1134443322 245677889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 013685 155 VGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 155 I~~Les~Ie~aE~riqEe~~ 174 (438)
|..|+..+..+..++++...
T Consensus 78 i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888887655
No 219
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.29 E-value=48 Score=34.08 Aligned_cols=143 Identities=23% Similarity=0.243 Sum_probs=95.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH---HHH---HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQST---VKI---KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~---~el---r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
..++.++....-|...|-.++++++.+.++.- +.+ .-.++.+++-.+....++.+++.....-+..+..--...
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666666666666666776666655333 222 225677777778888888888888888888888888888
Q ss_pred ccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH-----------HHHHHHHHchhh----HHHHHHHHHHHH
Q 013685 220 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA-----------QAVEDLKANLMD----KETELQNISEEN 284 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~-----------~~Ie~Lka~L~~----le~~l~~L~eEi 284 (438)
..++..|..|..+|--|.-.+. .+..+-+-.. +-|..|.+.-.- ++.+-..|..+.
T Consensus 217 es~eERL~QlqsEN~LLrQQLd---------dA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~ 287 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLD---------DAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINEC 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8899999999999998888887 3333333222 333333332222 566666677777
Q ss_pred HHHHHHHhhcccc
Q 013685 285 EMLKLEISKRELD 297 (438)
Q Consensus 285 eeLKsEI~~~~~~ 297 (438)
.-|+..+-.|+.+
T Consensus 288 n~LkEr~~qyEkE 300 (305)
T PF14915_consen 288 NHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777755
No 220
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=84.75 E-value=17 Score=31.45 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCC---CCCCCcchhhhhcccccchHHHHHHHHhhH
Q 013685 77 MKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL-SQNC---SGDYDLGQKIKENQDTMESKHLEEELSSLK 152 (438)
Q Consensus 77 ~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~-~~~~---~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk 152 (438)
......|..+..++..+...+..++..+.+...-+..+..-. ..+| .|+|+..++ .++-++.|+.+++.+.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~-----~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTD-----KEEAIQELKEKKETLE 80 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheec-----HHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666665555554210 0011 144444322 3455678888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 013685 153 SEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 153 ~EI~~Les~Ie~aE~riqEe~~ 174 (438)
..|..|...+..+...+.+.+.
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777766
No 221
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.67 E-value=8.3 Score=37.39 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=18.3
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
..|.+..++..++.++..|+..+..++...+
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566666666666666666666554433
No 222
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.60 E-value=12 Score=31.76 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=31.0
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.+..+|..+...++.+|..++..+..++.+++....
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999988877644
No 223
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.47 E-value=61 Score=34.57 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013685 90 LERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI~ 112 (438)
+..+..++..+...+..|.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 224
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.39 E-value=15 Score=33.80 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhccccCcccchhHH
Q 013685 280 ISEENEMLKLEISKRELDTPNMNSNLA 306 (438)
Q Consensus 280 L~eEieeLKsEI~~~~~~~~~~~~e~~ 306 (438)
+..++..+...+..+......++++-.
T Consensus 121 l~~e~~~l~~kL~~l~~~~~~vs~ee~ 147 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLRSGSKPVSPEEK 147 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 333444444444444443334555433
No 225
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.09 E-value=74 Score=35.25 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=118.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 013685 11 KNAESAHLELQSLKGNLIETISLMENMKN----QLRESKESETQAQALARE--------TLLQLETAKLSVEALRAEGMK 78 (438)
Q Consensus 11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~----qL~dl~~e~~~A~~~~eE--------~~~qLE~ae~~Ie~le~ei~e 78 (438)
.+...++..+..++.-++++=++|-++.+ |+.+|+.--. .++++ +..++..++..+......+..
T Consensus 197 evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr---~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~ 273 (570)
T COG4477 197 EVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYR---DMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQ 273 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH---HHHHccCCcccccHHHHHHHHHHHHHHHHhHHHH
Confidence 44556666666666666666666665553 3444442211 11121 455555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHH
Q 013685 79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQL 158 (438)
Q Consensus 79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~L 158 (438)
++ |+..+..+.-+.+.|..+=.-+++--. +...+... . +...+-+-+++..-.-++.+|..+
T Consensus 274 Le---------ld~aeeel~~I~e~ie~lYd~lE~Eve-----A~~~V~~~-~---~~l~~~l~k~ke~n~~L~~Eie~V 335 (570)
T COG4477 274 LE---------LDEAEEELGLIQEKIESLYDLLEREVE-----AKNVVEEN-L---PILPDYLEKAKENNEHLKEEIERV 335 (570)
T ss_pred hh---------hhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhc-C---cchHHHHHHHHHHHHHHHHHHHHH
Confidence 33 444444444444444333222211110 00000000 0 112334556667777788888888
Q ss_pred HHHHHHHHHhhhhhhhhcH--HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHH
Q 013685 159 RSALEIAETKLNEGQIQST--VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL 236 (438)
Q Consensus 159 es~Ie~aE~riqEe~~e~~--~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L 236 (438)
+...--+++++.--+-=.+ .++.+.+..+..........-+.+...++.....|.......+.+-..|++|+++--.-
T Consensus 336 ~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~A 415 (570)
T COG4477 336 KESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEA 415 (570)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 8887777776542211111 46777788888888888888899999999999988888888888888888887664433
Q ss_pred HHHhh
Q 013685 237 HMQLD 241 (438)
Q Consensus 237 ~~ei~ 241 (438)
+..+.
T Consensus 416 re~l~ 420 (570)
T COG4477 416 RENLE 420 (570)
T ss_pred HHHHH
Confidence 33333
No 226
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.88 E-value=37 Score=31.55 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685 86 IASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a 165 (438)
.+.+++.++-....+...+.+++..+...+.. ++... --..+.++.+...|...|+.-
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~l---------------------ge~L~-~iDFeqLkien~~l~~kIeER 61 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEEL---------------------GEGLH-LIDFEQLKIENQQLNEKIEER 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666530 00000 135667888888888888877
Q ss_pred HHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhh-
Q 013685 166 ETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNL- 244 (438)
Q Consensus 166 E~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~- 244 (438)
..++..+.. .+-..-+.-+-...+...+..++..++.+|......+..+..+|..++.++..+...+.+-.
T Consensus 62 n~eL~~Lk~--------~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 62 NKELLKLKK--------KIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665544 33333444555566667777778888888888888888888888888888888877776211
Q ss_pred --hhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHH
Q 013685 245 --MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE 282 (438)
Q Consensus 245 --~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~e 282 (438)
..-.=|.+=.+.+.....+..++..+..++.+...+..
T Consensus 134 ~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 134 QGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122455555666666666666666666655555443
No 227
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.84 E-value=70 Score=34.77 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=15.9
Q ss_pred HHHhhccHH---HHhhhhHHhhHHHHHHhh
Q 013685 215 LKANLMDKE---TELQGISEENEGLHMQLD 241 (438)
Q Consensus 215 Lka~l~d~E---~ELq~L~eEre~L~~ei~ 241 (438)
.+..++.++ .-++.++.+|+.|..+|+
T Consensus 490 ~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 490 QKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544443 455666677777776664
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.78 E-value=21 Score=28.83 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e 78 (438)
.++.+..+|+..++.+...+.-.-.-+..+..+++.+...+...-.....++.+++.+..++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888887777777777777777777766666666666666666665443
No 229
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.66 E-value=13 Score=38.18 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685 154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 233 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr 233 (438)
-+..|+..|-..+.+|..... .+-+|+|-|+.+--.+.-|...|+.+...+..++....++-.+|.-++...
T Consensus 78 s~r~lk~~l~evEekyrkAMv--------~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMV--------SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAH 149 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHH--------HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776655 466788888877777776666666666666666555544444443333333
No 230
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.65 E-value=41 Score=32.15 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
+...++.++..+...+.+|....+-++++|..+.+ .=-+|++..+|.+|+.++.--+.+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s---------------------~Lt~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS---------------------ALTTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hcChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666667776664 224788999999999999999999
Q ss_pred HHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685 162 LEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL 215 (438)
Q Consensus 162 Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL 215 (438)
|.....-++.--- ++.+++..++..-+.++...-.-++.-++.+
T Consensus 139 l~~~k~g~~~vtp----------edk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 139 LKNIKAGTNHVTP----------EDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHhcccCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877665432 2333444444444555544433344444433
No 231
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.65 E-value=61 Score=33.97 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 013685 145 EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET 224 (438)
Q Consensus 145 ~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ 224 (438)
..++..+...+...+..+..+..++...... ..+ -. .....-+..+..+|..++.++.++.....+..-
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~---~~--~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP 282 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMDASSKEGGSSGK------DAL---PE--VIANPIIQNLKTDIARAESKLAELSQRLGPNHP 282 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccc---hh--hhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3455556666666665555555554321110 000 00 012334566777777888888888887777777
Q ss_pred HhhhhHHhhHHHHHHhh
Q 013685 225 ELQGISEENEGLHMQLD 241 (438)
Q Consensus 225 ELq~L~eEre~L~~ei~ 241 (438)
.++.++.+...|+..|.
T Consensus 283 ~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 283 QYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78887777777777765
No 232
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.12 E-value=33 Score=37.15 Aligned_cols=91 Identities=26% Similarity=0.266 Sum_probs=60.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
.+-+++++++-+-=.++.=.+++. .++ .-.+..|+.+-....++.+.-..+++.-+..+..+..+...+.
T Consensus 323 s~ll~sqleSqr~y~e~~~~e~~q-------sql---en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 323 SPLLTSQLESQRKYYEQIMSEYEQ-------SQL---ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLK 392 (493)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHH-------HHH---HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655555433333332 111 1233445555555556666777788888888999999999999
Q ss_pred cHHHHhhhhHHhhHHHHHHhh
Q 013685 221 DKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~ 241 (438)
+...+|+++++.|..|.....
T Consensus 393 k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 393 KCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 999999999988888876665
No 233
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.89 E-value=1.1e+02 Score=36.43 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=31.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 148 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 148 ie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
+..+=.||++|++.|.++..+ |.-++.. ..|-+.+..+......|.+++.+|..++..|..+.+..+
T Consensus 406 lKd~~~EIerLK~dl~AaReK-nGvyise-----e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREK-NGVYISE-----ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhh-CceEech-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777766655 3333311 122222233333344444444444444444444444443
No 234
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=82.79 E-value=37 Score=35.01 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
++.-+.++.-.|..+-+++..++..+.. +-.||+.+=..-..+...++++.+.|+....-+...-..+++.-.+++
T Consensus 239 Ie~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E 318 (384)
T KOG0972|consen 239 IEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIE 318 (384)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888877732 677788777778888888888999999998889888889999999999
Q ss_pred HHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685 106 KLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 106 kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
.+..+++..+.+.+ .+...-.|+.-+..++.+...+.=+
T Consensus 319 ~~KqemEe~G~~ms-----------------DGaplvkIkqavsKLk~et~~mnv~ 357 (384)
T KOG0972|consen 319 QLKQEMEEQGAKMS-----------------DGAPLVKIKQAVSKLKEETQTMNVQ 357 (384)
T ss_pred HHHHHHHHhccccc-----------------CCchHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999886321 1444555555555555555544433
No 235
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.08 E-value=50 Score=31.86 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 28 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78 (438)
Q Consensus 28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e 78 (438)
.-+...|.+++..|..++..+.++....-.+..++......+.........
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~ 77 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL 77 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555666666666666555554433
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.04 E-value=38 Score=34.35 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQ------AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~------A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
...+-..|.++-..+.=||.+|.++-..+.- +....+.....++..+.+++....++.+.+.++..+...+...
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555556666665544222 2222344677777778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 013685 94 RTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++++..|+.+-..|...+..+.
T Consensus 234 ~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 234 KGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777777665555
No 237
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.92 E-value=47 Score=34.11 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=10.7
Q ss_pred chHHHHHHHHhhHHHHHHHHHHH
Q 013685 140 ESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
.+..++.++..++..|.....++
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555544444443
No 238
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.76 E-value=16 Score=36.84 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
.++.-|..+...|..++.++..+..+.......+++...+|++.++.+.+|.+-.=-.+++|+.+..||.++=.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777777777777777777777777777777777777777777777777666543
No 239
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.70 E-value=62 Score=32.64 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH
Q 013685 88 SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
..+..+..++..|+..|.+.+.++.-+.. + -+-+||----.|..+...|.+|+..-.+
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~T---------Y----------kD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLST---------Y----------KDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H----------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666665552 1 1467775555666666666666655443
No 240
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.66 E-value=68 Score=33.05 Aligned_cols=106 Identities=13% Similarity=0.234 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHH
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 258 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~ 258 (438)
.+...+..+.....-+.+..+..+..+..++.++-..+..+.++.-=|..+..+..--+-.++ +++.-..-
T Consensus 134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~K---------E~e~m~qn 204 (305)
T PF14915_consen 134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIK---------EIEHMYQN 204 (305)
T ss_pred HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence 444445555555566677777777777777777777777777776666665555555555554 77777777
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
-.+.|...-+.=+.++.++.++..+|--|+.++.+
T Consensus 205 e~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 205 EQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999984
No 241
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.59 E-value=34 Score=32.57 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
..+..++.++..++..+.+--+.|..+..=+
T Consensus 135 ~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3566667777777777777777776665544
No 242
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.47 E-value=26 Score=29.76 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH
Q 013685 73 RAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK 152 (438)
Q Consensus 73 e~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk 152 (438)
..++..+..++..+...+......+..++..+..|..++..-. .+|-.+.+-.+.+.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kad-----------------------qkyfa~mr~~d~l~ 58 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKAD-----------------------QKYFAAMRSKDALD 58 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHhHHHHH
Confidence 3566777777777777777777777777777777777665544 34555555555555
Q ss_pred HHHHHHHHHHH
Q 013685 153 SEVGQLRSALE 163 (438)
Q Consensus 153 ~EI~~Les~Ie 163 (438)
.++..|..-+.
T Consensus 59 ~e~k~L~~~~~ 69 (96)
T PF08647_consen 59 NEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 243
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.29 E-value=55 Score=35.13 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 180 lr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
......++....+....+.+.+-+++-.+.++-..+++.+..+|.+|+.|++|+..|..+..
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666677777788888888999999999999999999999999999988876
No 244
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.23 E-value=48 Score=31.01 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=11.2
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHH
Q 013685 139 MESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
+++..+..+.+.++.+|+.|+..|
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 245
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.20 E-value=27 Score=30.84 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccC-CCCCCCcchhhhhcccccchHHHHHHHHhh
Q 013685 76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR---NLSQN-CSGDYDLGQKIKENQDTMESKHLEEELSSL 151 (438)
Q Consensus 76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~---~~~~~-~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~l 151 (438)
+......|..+...+..+...+..++..+.+++.-+..++. ..+-| ..++|+..++ .++-...|+.+++.+
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd-----~~e~~~~l~~r~E~i 83 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVD-----KTKVEKELKERKELL 83 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhcc-----HHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555554443333332 11111 1155554433 233446678888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 013685 152 KSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 152 k~EI~~Les~Ie~aE~riqEe~~ 174 (438)
...|..|+...+.+...+.+.+.
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766
No 246
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.03 E-value=18 Score=31.30 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=48.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-----HHHHHHHHHH---------HHHHhhhhhcHHHHHHHHHHH
Q 013685 143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-----VKIKSAFEQL---------EQIKHQSGLREVELEAELQKA 208 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-----~elr~a~E~l---------e~~K~e~~~ri~Ele~eie~~ 208 (438)
.+-..+..++.++..+-..+..++..+++..+=.. .+-...|..+ +..+.....++..++..|+.+
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~l 86 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666555444222 1222233322 445556666666667777777
Q ss_pred HHHHHHHHHhhccHHHHhhhh
Q 013685 209 KSDIEELKANLMDKETELQGI 229 (438)
Q Consensus 209 ~~eLeELka~l~d~E~ELq~L 229 (438)
+..+..++..+.+++..|+.+
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666666666654
No 247
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.64 E-value=1.2e+02 Score=36.10 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
..+.......|+++..+|.-++..|......|.-
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~ 473 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMN 473 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666677777777777777777777777653
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.24 E-value=63 Score=31.80 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013685 28 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL-ERSRTRINLLEGLVSK 106 (438)
Q Consensus 28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL-ee~~~eI~~LE~ei~k 106 (438)
.-++-.|.++...+.++...++++....-.+..+++.+...++.++..-..+-. .-...| .+.-.++..++..+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~---~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ---AGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777777777777777666654433322 222222 2233466666666666
Q ss_pred HHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 013685 107 LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ 186 (438)
Q Consensus 107 Le~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~ 186 (438)
++..+..... -...++..|..|+..|..++...+.+.... .-..+.+.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~--~~akA~~~ 151 (225)
T COG1842 104 LEAELQQAEE------------------------------QVEKLKKQLAALEQKIAELRAKKEALKARK--AAAKAQEK 151 (225)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 6666555552 233444444444444444444443333322 22234445
Q ss_pred HHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685 187 LEQIKHQSGLREVELEAELQKAKSDIEELKAN 218 (438)
Q Consensus 187 le~~K~e~~~ri~Ele~eie~~~~eLeELka~ 218 (438)
+.......+. +.....++.++..+++..++
T Consensus 152 v~~~~~~~s~--~sa~~~fer~e~kiee~ea~ 181 (225)
T COG1842 152 VNRSLGGGSS--SSAMAAFERMEEKIEEREAR 181 (225)
T ss_pred HHHHhcCCCc--hhhHHHHHHHHHHHHHHHHH
Confidence 5555554444 56666666777777665544
No 249
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.10 E-value=18 Score=30.15 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=10.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
++..++..+..+...|..++..++
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 250
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.63 E-value=96 Score=33.52 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=34.9
Q ss_pred cccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 135 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 135 ~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
...+++..-++.-|..++.||.+|+.-+..+...|++...
T Consensus 242 ~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 242 DVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888999999999999999999999999988665
No 251
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.12 E-value=20 Score=29.17 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=29.7
Q ss_pred hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+.++...+..|.+|=+.|...-- ....-+++++..+..+...+..+..+++.+..++..|+..+.
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el---------~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKEL---------KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444443332 334444444444444444444444555555555555544443
No 252
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.47 E-value=1.3e+02 Score=34.59 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=12.6
Q ss_pred chHHHHHHHHhhHHHHH
Q 013685 140 ESKHLEEELSSLKSEVG 156 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~ 156 (438)
.+|.|+..++-|+.++.
T Consensus 529 n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 529 NYLSLKYKLDMLNEFSR 545 (762)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 46777888888887773
No 253
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.13 E-value=88 Score=32.28 Aligned_cols=102 Identities=22% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHH
Q 013685 21 QSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRA-------EGMKAI----EAYSSIASE 89 (438)
Q Consensus 21 e~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~-------ei~ele----e~~~sl~~E 89 (438)
+.=-..|..+...|..++.+|....-...+.....+.+...+..-....+.-+. .+.... ........+
T Consensus 4 ~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~ 83 (344)
T PF12777_consen 4 ENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEE 83 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777777777777777777777776666655554322222222221 121111 122333444
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcccccccCCC
Q 013685 90 LERSRTRINLLEGLVSKLE-ADTSNANRNLSQNCS 123 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe-~eI~~~e~~~~~~~~ 123 (438)
|+...-.+.....-|..|. .+|..+. |+.+||.
T Consensus 84 L~~a~P~L~~A~~al~~l~k~di~Eik-s~~~PP~ 117 (344)
T PF12777_consen 84 LAEAEPALEEAQEALKSLDKSDISEIK-SYANPPE 117 (344)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHHH-HSSS--H
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH-hhCCCcH
Confidence 5555555555555556555 3566666 4666665
No 254
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.77 E-value=26 Score=29.90 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=16.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+..+..++..+-..+..+...+...+.-+.++
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444433
No 255
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.38 E-value=1.5e+02 Score=33.94 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhchH
Q 013685 341 AEQLEAAQSANCEAEAELRRLKVQSD 366 (438)
Q Consensus 341 ~e~l~a~~~a~~~~eae~~rl~vq~~ 366 (438)
.+.+..--.-...|+-|=+|||.|++
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677777788885544
No 256
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=76.17 E-value=9.5 Score=39.97 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
.+...|..++..+..++..+..+...+.....+|..+...+..|+..+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555566666666666655555555555666666666666665443
No 257
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.03 E-value=76 Score=30.43 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 59 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 59 ~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
......++..|..++..+.+++.....+....+....+|.++...++.|+.++.+.+
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666666666666667777777777766666655
No 258
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.85 E-value=3.7 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=8.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHh
Q 013685 147 ELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~r 168 (438)
.|.-+|+.|...--.|-+++.|
T Consensus 127 dvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 127 DVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHhhHHHH
Confidence 3333333333333333333333
No 259
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.64 E-value=1.4e+02 Score=33.14 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhcc
Q 013685 338 ARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLST 381 (438)
Q Consensus 338 ~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~~ 381 (438)
+.+.-++.|-+. -.-+=++-|..+-.++|+|-.+.++++++
T Consensus 388 eelk~~f~a~q~---K~a~tikeL~~El~~yrr~i~~~~s~ia~ 428 (613)
T KOG0992|consen 388 EELKVQFTAKQE---KHAETIKELEIELEEYRRAILRNASEIAQ 428 (613)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 334444444433 34445678889999999999988876664
No 260
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=75.43 E-value=77 Score=32.58 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=48.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL 226 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~EL 226 (438)
.+.-++.++..++.++..++.++++-+.... +...+..-.....-+.++..++..++.++.+++...-+-.=.+
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~------~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v 244 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNK------VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Confidence 4456666777777777777777666555332 0011111222334466666666666666666665555444455
Q ss_pred hhhHHhhHHHHHHhh
Q 013685 227 QGISEENEGLHMQLD 241 (438)
Q Consensus 227 q~L~eEre~L~~ei~ 241 (438)
+.++.+...|...|.
T Consensus 245 ~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 245 PSLQARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 261
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=75.31 E-value=1.3e+02 Score=32.65 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685 90 LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 163 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie 163 (438)
..-.-+-|..|+.++.+++.++..+..+. .-.+..++.|+.+|..|+..|...+.++-
T Consensus 281 a~~~~~lI~~Le~qLa~~~aeL~~L~~~~----------------~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 281 ITAIYQLIAGFETQLAEAKAEYAQLMVNG----------------LDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444567777777777777777665310 01156788888888888888888888874
No 262
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.13 E-value=13 Score=36.58 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685 84 SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 163 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie 163 (438)
+.+..+.-...+++..++.....|..-+..... -+++.+|..+|..++.+|+++++++.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~---------------------~~d~l~ie~~L~~v~~eIe~~~~~~~ 186 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKT---------------------VEDLLEIERELSRVRSEIEQLEGQLK 186 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666665554442 56789999999999999999999999
Q ss_pred HHHHhhh
Q 013685 164 IAETKLN 170 (438)
Q Consensus 164 ~aE~riq 170 (438)
.++.+.+
T Consensus 187 ~l~~~v~ 193 (262)
T PF14257_consen 187 YLDDRVD 193 (262)
T ss_pred HHHHhhc
Confidence 9888875
No 263
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=74.92 E-value=16 Score=31.64 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE 166 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE 166 (438)
+.+++.+..++...+..+..++..+.++-. .+++..|.-.+..+++++..+..+|....
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt---------------------~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT---------------------RDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566667777777777777888887777764 46777777888888888888888877664
Q ss_pred H
Q 013685 167 T 167 (438)
Q Consensus 167 ~ 167 (438)
.
T Consensus 93 ~ 93 (106)
T PF10805_consen 93 H 93 (106)
T ss_pred H
Confidence 3
No 264
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.69 E-value=1.4e+02 Score=32.72 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHH
Q 013685 178 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLR 257 (438)
Q Consensus 178 ~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~ 257 (438)
.+++..|..+.....+...--..+...+.....++..|+..+...- ....- ..+..-+. .+-.-+-
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-~~s~~----~elE~rl~---------~lt~~Li 402 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA-SSSSW----NELESRLT---------QLTESLI 402 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-ccCCc----HhHHHHHh---------hccHHHH
Confidence 4555566666666666666666666667777777777776665533 11110 12222233 4444555
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHH
Q 013685 258 KLAQAVEDLKANLMDKETELQNISEENEM 286 (438)
Q Consensus 258 ~~~~~Ie~Lka~L~~le~~l~~L~eEiee 286 (438)
..+..++.|...-+.+...++.+...+..
T Consensus 403 ~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 403 QKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 66777888888888888888888777764
No 265
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.48 E-value=81 Score=30.03 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAI----EAYSSIASELERSRT 95 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~ele----e~~~sl~~ELee~~~ 95 (438)
+..+...+..+...|.+++.++.++...+..- .....++.+++.++.++..|..++..+. +.+..+..++.....
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443222221 2223466666667777777776666554 256666667777777
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 013685 96 RINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 96 eI~~LE~ei~kLe~eI~~~ 114 (438)
.+++-++-|.-|..=+.+.
T Consensus 150 ~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 150 AANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHhhHHHHHHHHHHh
Confidence 7777777777777655553
No 266
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.74 E-value=69 Score=28.90 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
+...+...++.+..+|..+..-|..|+..|..
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444433333
No 267
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.57 E-value=1.7e+02 Score=33.37 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHchhhHH---HHHHHHHHHHHHHHHHHhhc
Q 013685 258 KLAQAVEDLKANLMDKE---TELQNISEENEMLKLEISKR 294 (438)
Q Consensus 258 ~~~~~Ie~Lka~L~~le---~~l~~L~eEieeLKsEI~~~ 294 (438)
.+...+..+...+.... .....|-.+|-+||.-|--|
T Consensus 280 ~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 280 TLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEE
Confidence 33444445555555444 55556666666666655433
No 268
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.55 E-value=81 Score=31.98 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=20.0
Q ss_pred HchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 268 ANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 268 a~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
-.|.|++.++...-+.|.-|.+++.+.
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356677788888888888888888743
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=73.53 E-value=80 Score=29.55 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 10 TKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 55 (438)
Q Consensus 10 ~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~ 55 (438)
...++.+..|.+.++.+|..+...|..+=.+++.|......+...+
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777777777777766666555
No 270
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=72.97 E-value=1.8e+02 Score=34.21 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHH
Q 013685 66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLE 145 (438)
Q Consensus 66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~ 145 (438)
..++.++.=...-..-....+... +..-..+..+...|..|+..+..... .+ +.
T Consensus 302 ~EtlnTl~ya~Rak~iknk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~~----------------------~~---~~ 355 (913)
T KOG0244|consen 302 QETLNTLRYADRAKQIKNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKAG----------------------DE---LD 355 (913)
T ss_pred hhHHHHHHHhhHHHHhcccccccc-cHHHHHHHHHHHHHHHHHHHHHhhcc----------------------cc---ch
Confidence 344444444443333333333333 44555566666666666665555531 11 45
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQST 177 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~ 177 (438)
.+|+++++++..+.++++..-.+.++.....+
T Consensus 356 ~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s 387 (913)
T KOG0244|consen 356 AEINSLPFENVTLEETLDALLQEKGEERSTLS 387 (913)
T ss_pred hHHhhhhhhhhhhhhhHHHHhcchhhhhhhhh
Confidence 67778888888888888888877776666553
No 271
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.70 E-value=1.3e+02 Score=31.57 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHchhhHHHHHH
Q 013685 256 LRKLAQAVEDLKANLMDKETELQ 278 (438)
Q Consensus 256 l~~~~~~Ie~Lka~L~~le~~l~ 278 (438)
+..+.++++-.+...+.+-.+++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 272
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=72.60 E-value=8.8 Score=40.22 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSV----EALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~I----e~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
+.+....+...+.++...+.++..++......+.++...++.....+ ..+.+++.++++.+..+...+..+...+.
T Consensus 89 ~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~ 168 (370)
T PF02994_consen 89 LKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIK 168 (370)
T ss_dssp -----------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHH
Confidence 34444444445555666666677776666666655555555555443 46889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 013685 99 LLEGLVSKLEADTSNANR 116 (438)
Q Consensus 99 ~LE~ei~kLe~eI~~~e~ 116 (438)
.++..+..+...+..++.
T Consensus 169 ~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 169 ELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988888774
No 273
>PRK12704 phosphodiesterase; Provisional
Probab=72.57 E-value=1.6e+02 Score=32.51 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHH----HhccCC---CCccccccc
Q 013685 350 ANCEAEAELRRLKVQSDQWRKAAEAAAS----MLSTGN---NGKCMERSG 392 (438)
Q Consensus 350 a~~~~eae~~rl~vq~~qwrkaae~aaa----~l~~g~---~g~~~er~g 392 (438)
|+..-+...+++=++.=| |=|++-++- |+.-.+ -||+..|-|
T Consensus 182 ~~~~a~~~a~~i~~~a~q-r~a~~~~~e~~~~~v~lp~d~mkgriigreG 230 (520)
T PRK12704 182 AKEEADKKAKEILAQAIQ-RCAADHVAETTVSVVNLPNDEMKGRIIGREG 230 (520)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcchhhhhhceeeeecCCchhhcceeCCCc
Confidence 444445555666555554 344444333 222222 677888777
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.50 E-value=72 Score=28.59 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=26.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 9 QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 55 (438)
Q Consensus 9 ~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~ 55 (438)
+..+...+..+++.+-....-++..+.++..=+.+|..--..+.-|.
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk 57 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYK 57 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44455555666666666666666666665555555555444444444
No 275
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.40 E-value=26 Score=35.75 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQ 278 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~ 278 (438)
|++++++.++.-|+..++.|.++..-+|
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 8888888898899999988888855554
No 276
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.22 E-value=24 Score=36.39 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.....|......+.++..++..+..+...+......+..+++.....+.....-+.-+..+.......+..+......+-
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccH
Confidence 33333333333333333333333333333333333333333333333333333333344444444444555555554444
Q ss_pred HHH
Q 013685 102 GLV 104 (438)
Q Consensus 102 ~ei 104 (438)
+++
T Consensus 312 GD~ 314 (344)
T PF12777_consen 312 GDS 314 (344)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 277
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.82 E-value=31 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~a 165 (438)
+.-|+..+...+.|-.+...||++.
T Consensus 26 v~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 26 VNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555555555555555544
No 278
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.72 E-value=59 Score=26.46 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 45 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLL 100 (438)
Q Consensus 45 ~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~L 100 (438)
+..+.+|..-+.-+..+++.++..-..+......+..+...+..+-.....+|..|
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444433333444444444444444444444444333
No 279
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=69.47 E-value=92 Score=28.57 Aligned_cols=10 Identities=30% Similarity=0.315 Sum_probs=5.0
Q ss_pred HHHHHhhhcc
Q 013685 106 KLEADTSNAN 115 (438)
Q Consensus 106 kLe~eI~~~e 115 (438)
.|++.|+-..
T Consensus 60 alNAsIEAar 69 (213)
T PF00015_consen 60 ALNASIEAAR 69 (213)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhccccch
Confidence 4555555444
No 280
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.29 E-value=35 Score=33.55 Aligned_cols=62 Identities=24% Similarity=0.299 Sum_probs=37.7
Q ss_pred HHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 222 KETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 222 ~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
++.+...++++-.+|..++. ....+++..+.++..++.+...+..+-++|.+++..|..+|.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~---------~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELE---------KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555 455555556666666666666666667777777777777765
No 281
>PLN02678 seryl-tRNA synthetase
Probab=69.28 E-value=37 Score=36.67 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 013685 43 ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNC 122 (438)
Q Consensus 43 dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~ 122 (438)
.+..++.+.+..++.+..+...+-+.|..+.... +....+..++.++..+|..++..+..++.+|..+-.++||.+
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344444444444444444444444443322111 234556667788888999999999999999999888899988
Q ss_pred CCCCCcc
Q 013685 123 SGDYDLG 129 (438)
Q Consensus 123 ~~~~~~~ 129 (438)
+.+|...
T Consensus 113 ~~~VP~G 119 (448)
T PLN02678 113 HDSVPVS 119 (448)
T ss_pred CccCCCC
Confidence 8877543
No 282
>PF13166 AAA_13: AAA domain
Probab=69.12 E-value=2e+02 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 013685 144 LEEELSSLKSEVGQLRSALEIAET 167 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~ 167 (438)
+...+..+..-|..+...|.....
T Consensus 361 ~~~~~~~l~~~i~~~n~~i~~~n~ 384 (712)
T PF13166_consen 361 INEDIDELNSIIDELNELIEEHNE 384 (712)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 283
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.96 E-value=18 Score=29.06 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=45.6
Q ss_pred HHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhH
Q 013685 264 EDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM 327 (438)
Q Consensus 264 e~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~ 327 (438)
..|..++..+-..-+.|..+|..|+.++.....+ .+-.....+.|++..+-++.+|..|.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E----R~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREE----RAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4455566666677778888888888888877776 56677788889888888888887653
No 284
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=68.92 E-value=2.3e+02 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=14.9
Q ss_pred HHHHHHHHhhHHHHH-HHHHHHHHHH
Q 013685 142 KHLEEELSSLKSEVG-QLRSALEIAE 166 (438)
Q Consensus 142 ~eL~~Eie~lk~EI~-~Les~Ie~aE 166 (438)
+.|+.+|.+++.||. .+...+...+
T Consensus 600 ~~lkeki~~~~~Ei~~eie~v~~S~g 625 (762)
T PLN03229 600 DDLKEKVEKMKKEIELELAGVLKSMG 625 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456777777777776 4444444333
No 285
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=68.73 E-value=1.5e+02 Score=30.85 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH---------H
Q 013685 95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI---------A 165 (438)
Q Consensus 95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~---------a 165 (438)
+-|..|++++-.+++.+....+- -...+.+||-|+.++++++.++.+-..+|-. .
T Consensus 223 ~Lvs~Le~eL~~iqaqL~tvks~----------------m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~q 286 (372)
T COG3524 223 SLVSKLEDELIVIQAQLDTVKSV----------------MNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQ 286 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------------cCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHH
Confidence 35677888888888887777631 0223678999999999999999998887753 3
Q ss_pred HHhhhhhhhhcH
Q 013685 166 ETKLNEGQIQST 177 (438)
Q Consensus 166 E~riqEe~~e~~ 177 (438)
-.++|++.++.+
T Consensus 287 aAefq~l~lE~~ 298 (372)
T COG3524 287 AAEFQRLYLENT 298 (372)
T ss_pred HHHHHHHHHHHH
Confidence 345666666554
No 286
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.70 E-value=41 Score=27.17 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 202 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 202 e~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
++.+..+...+.-+--...-.+.++..|..||+.....+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~ 43 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLG 43 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 287
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=68.19 E-value=85 Score=27.69 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013685 33 LMENMKNQLRESKES--------ETQAQALARETLLQLETAKLSVEALR-AEGMKAIEAYS-SIASELERSRTRINLLEG 102 (438)
Q Consensus 33 ~Ieelr~qL~dl~~e--------~~~A~~~~eE~~~qLE~ae~~Ie~le-~ei~elee~~~-sl~~ELee~~~eI~~LE~ 102 (438)
.+..+..+++++-++ -.++..+++++..+......+++... ..+..+...+. --..+|+.+.++|..|+.
T Consensus 18 ~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Ler 97 (108)
T COG3937 18 LAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALER 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence 444445555555444 25677788888888887777777653 33444444444 123678899999999999
Q ss_pred HHHHHHHHh
Q 013685 103 LVSKLEADT 111 (438)
Q Consensus 103 ei~kLe~eI 111 (438)
.|.+|++.+
T Consensus 98 qv~~Lenk~ 106 (108)
T COG3937 98 QVADLENKL 106 (108)
T ss_pred HHHHHHHHh
Confidence 999998865
No 288
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=67.69 E-value=55 Score=29.64 Aligned_cols=79 Identities=29% Similarity=0.342 Sum_probs=51.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh--------hhhcH-------HHHHHHHHHHHHHHhhhhhcHHHHHHHH
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG--------QIQST-------VKIKSAFEQLEQIKHQSGLREVELEAEL 205 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe--------~~e~~-------~elr~a~E~le~~K~e~~~ri~Ele~ei 205 (438)
...+..+...++.+|...+..|++++.-.+|. -++.. ..+-..-.+|+..+......|..++.++
T Consensus 25 Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~ 104 (131)
T KOG1760|consen 25 FSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESEL 104 (131)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666555555444432 22222 3445556778888888888888888888
Q ss_pred HHHHHHHHHHHHhh
Q 013685 206 QKAKSDIEELKANL 219 (438)
Q Consensus 206 e~~~~eLeELka~l 219 (438)
+...+.+.+||+-|
T Consensus 105 e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 105 ESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888765
No 289
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.61 E-value=1.2e+02 Score=29.11 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.++...+..++..|..++.....+.......+.++.++...+..+...+...+-
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555443
No 290
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.18 E-value=1.8e+02 Score=31.70 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 71 ALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 71 ~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
++..+...++.....+...|.+....++.+..++..+.
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 291
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=67.05 E-value=74 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 69 VEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 69 Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
++.+...+.-++..+.+++.++..+...+.++..-+..|+
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333
No 292
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=66.94 E-value=1.3e+02 Score=29.30 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN 135 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~ 135 (438)
+++..+|......+..+...+..+...+..+....+.....+......+..|...+..+.++ +. ..
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~------~~--------~~ 146 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPN------GE--------SP 146 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCC------Cc--------ch
Confidence 34556666666666666666666666666666666666667777777777777766665420 00 13
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
+.......|..++..+..+|..++-.+-....+
T Consensus 147 l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~r 179 (240)
T PF12795_consen 147 LSEAQRWLLQAELAALEAQIEMLEQELLSNNNR 179 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 334455555555555555555555555444333
No 293
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.57 E-value=2e+02 Score=31.41 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHH
Q 013685 81 EAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRS 160 (438)
Q Consensus 81 e~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les 160 (438)
..+..+..+|.....+|.+-+..-.+|-++++.+-. +-.-...+.+|.++-+.|+..+.
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~---------------------dv~rk~ytqrikEi~gniRKq~~ 403 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD---------------------DVQRKVYTQRIKEIDGNIRKQEQ 403 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc---------------------hhHHHHHHHHHHHHHhHHHHHHH
Confidence 344555555666666666666666666666665552 11234566777777777777777
Q ss_pred HHHHHHHhhhhhhh
Q 013685 161 ALEIAETKLNEGQI 174 (438)
Q Consensus 161 ~Ie~aE~riqEe~~ 174 (438)
.|--.-.+-.+++.
T Consensus 404 DI~Kil~etreLqk 417 (521)
T KOG1937|consen 404 DIVKILEETRELQK 417 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 77655555555555
No 294
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.39 E-value=87 Score=34.05 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLET----AKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~----ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
.++..|+..|..+...+..+..++.-++..+.-...+.......+.. ....+..+..-..-+...+..+...+-.+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443333332111000000 01123333344444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 013685 94 RTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..++..++..+..|+.++..+.
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555555555444
No 295
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=65.99 E-value=1.3e+02 Score=28.93 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELER------ 92 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee------ 92 (438)
=++.|..++.+.+..|.+....|.........+.........++..+...+......+..+..-......+|.+
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLe 147 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLE 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888999999998888888888888888777777777777777777777776666555555444
Q ss_pred -HHHHHHHHHHHHHHHHHHhh
Q 013685 93 -SRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 93 -~~~eI~~LE~ei~kLe~eI~ 112 (438)
-+.+|..|...+.....+++
T Consensus 148 aAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 148 AAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 296
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=65.86 E-value=1.2e+02 Score=28.51 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 013685 49 TQAQALARETLLQLETAKLSVEALRAEGMKAI----EAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG 124 (438)
Q Consensus 49 ~~A~~~~eE~~~qLE~ae~~Ie~le~ei~ele----e~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~ 124 (438)
.++.-+.+.+..|+..+...+.+..-...... -.++.+..+|.+-..=..+|.+.|...+..+....
T Consensus 66 ~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~--------- 136 (173)
T PF07445_consen 66 QQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQ--------- 136 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 34555667888888888888766542222222 23345555666665556666666666666555544
Q ss_pred CCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 125 DYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 125 ~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
+.+.+.+..+|..+.+-+.+|+.+|..+|..|+
T Consensus 137 -------------~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 137 -------------SFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 237888999999999999999999999888775
No 297
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.82 E-value=1e+02 Score=32.94 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 013685 41 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120 (438)
Q Consensus 41 L~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~ 120 (438)
+-.+..++.++...++.+..+...+-+.|..+.... .....++..++.+++.+|..++..+..++.++...-..+||
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK---KDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444444444444444444444444443322111 11155677778888888888999999999888888888889
Q ss_pred CCCCCCCc
Q 013685 121 NCSGDYDL 128 (438)
Q Consensus 121 ~~~~~~~~ 128 (438)
..+.+|..
T Consensus 109 ~~~~~vP~ 116 (418)
T TIGR00414 109 IPHESVPV 116 (418)
T ss_pred CCCccCCC
Confidence 88877743
No 298
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=65.58 E-value=2.2e+02 Score=31.56 Aligned_cols=84 Identities=24% Similarity=0.212 Sum_probs=60.1
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
++-..+.++...-.|++.|-+.|-++..++-....+ .+.++..--.+..+...+.+++++++..-+|....+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E--------keel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE--------KEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777777777777776655552 344455555667777788888888888888888888
Q ss_pred ccHHHHhhhhHH
Q 013685 220 MDKETELQGISE 231 (438)
Q Consensus 220 ~d~E~ELq~L~e 231 (438)
.+-+.||+.|+.
T Consensus 292 ~EaeeELk~lrs 303 (596)
T KOG4360|consen 292 HEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHhhcc
Confidence 888888887654
No 299
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.58 E-value=1.4e+02 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHH
Q 013685 151 LKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQL 187 (438)
Q Consensus 151 lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~l 187 (438)
.+.||.+|+.-|+...+.+-+-.. -|++.|.+|
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDk----GiQKYFvDI 154 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDK----GIQKYFVDI 154 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhh----hHHHHHhhh
Confidence 355555555555555555544333 445555544
No 300
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.27 E-value=1.2e+02 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 013685 150 SLKSEVGQLRSALEIAE 166 (438)
Q Consensus 150 ~lk~EI~~Les~Ie~aE 166 (438)
.++..-.+|+.+-+.++
T Consensus 95 ~~re~E~qLr~rRD~LE 111 (159)
T PF05384_consen 95 MLREREKQLRERRDELE 111 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 301
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=65.10 E-value=1.3e+02 Score=28.69 Aligned_cols=29 Identities=31% Similarity=0.593 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhh
Q 013685 200 ELEAELQKAKSDIEELKANLMDKETELQG 228 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~d~E~ELq~ 228 (438)
+++.++...+.+|..+..++...+.-|..
T Consensus 68 ~~E~E~~~~~~el~~~E~rl~~rE~~L~~ 96 (201)
T PF12072_consen 68 ELERELKERRKELQRLEKRLQQREEQLDR 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 302
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.89 E-value=2.2e+02 Score=31.31 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=20.6
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHH----HHhccCC---CCcccccccC
Q 013685 350 ANCEAEAELRRLKVQSDQWRKAAEAAA----SMLSTGN---NGKCMERSGS 393 (438)
Q Consensus 350 a~~~~eae~~rl~vq~~qwrkaae~aa----a~l~~g~---~g~~~er~gs 393 (438)
|+...+...+++=++.=| |=|++-++ .|+.-.+ -||+..|-|-
T Consensus 176 ~~~~a~~~a~~i~~~aiq-r~a~~~~~e~~~~~v~lp~d~~kgriigreGr 225 (514)
T TIGR03319 176 AKEEADKKAKEILATAIQ-RYAGDHVAETTVSVVNLPNDEMKGRIIGREGR 225 (514)
T ss_pred HHHHHHHHHHHHHHHHHH-hccchhhhhheeeeEEcCChhhhccccCCCcc
Confidence 344444444555554444 33444333 2332233 5778887773
No 303
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=63.87 E-value=55 Score=28.94 Aligned_cols=59 Identities=29% Similarity=0.320 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIE----AYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee----~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
+..++..+..+|..++.++..-++ .+.++-..||++..+|..||.-+..+++++....+
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 456677777777777777765554 56677788999999999999999999999998884
No 304
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.84 E-value=79 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 61 QLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 61 qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
++..+=.+|..|+-++.++.+...++..+-
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333333333333333333333333333
No 305
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.82 E-value=2.7e+02 Score=31.83 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhccCCCCc
Q 013685 339 RMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGK 386 (438)
Q Consensus 339 ~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~~g~~g~ 386 (438)
++.--|+..=+||+.-+.=+--||-=.++++|-++- -|+.-|-.|+
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~i--v~i~qg~~~~ 323 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQI--VRILQGEPSD 323 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhh--hhhhcCCCcc
Confidence 677777888889999888888899999999999884 4555555444
No 306
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.74 E-value=1.1e+02 Score=27.24 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
+....++.+...+..+...+..+...+..+...+..+...+..+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555543
No 307
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=63.63 E-value=2.7e+02 Score=31.83 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 183 AFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 183 a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+..+........++|..+..++..++..+..++.....+..++++.......+...+.
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555555555555555444444
No 308
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=63.39 E-value=1.9e+02 Score=30.00 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH----HHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHH
Q 013685 180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE----LKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNND 255 (438)
Q Consensus 180 lr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE----Lka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~e 255 (438)
-|--++++...+....+.......-|.++..++.. ...+..-+-.+|.. |..+.+ ++...
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~-------l~q~fr---------~a~~~ 288 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLAS-------LMQKFR---------RATDT 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------HHHHH
Confidence 34445666677777777788888888887776543 33344444444444 444444 55556
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhH
Q 013685 256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM 327 (438)
Q Consensus 256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~ 327 (438)
+..++....-+..-+..-..++..++.+++.+|.++.+..+ +|++-+- =.+.+-+++||..-|
T Consensus 289 lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~---~msDGap------lvkIkqavsKLk~et 351 (384)
T KOG0972|consen 289 LSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGA---KMSDGAP------LVKIKQAVSKLKEET 351 (384)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccCCch------HHHHHHHHHHHHHHH
Confidence 66666666666666667778999999999999999987664 4555432 123445666665533
No 309
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.37 E-value=51 Score=26.30 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 65 AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 65 ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++..|..|+..+.-.+..+..+..-+.+-...|..|+..+..|...+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777888888888888888888888888888888888887776
No 310
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.70 E-value=34 Score=26.71 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 72 LRAEGMKAIEAYSSIASELERSRTRINLLEGLV 104 (438)
Q Consensus 72 le~ei~elee~~~sl~~ELee~~~eI~~LE~ei 104 (438)
++.++..+...+..++.+..+++..|..+++-|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444443333
No 311
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.67 E-value=58 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHH
Q 013685 186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISE 231 (438)
Q Consensus 186 ~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~e 231 (438)
+++.+-..+...|..........+.++..++..+.+....|..|+.
T Consensus 3 qi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 3 QIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555444444445555555555555444444444444
No 312
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.61 E-value=38 Score=37.83 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHH
Q 013685 76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEV 155 (438)
Q Consensus 76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI 155 (438)
+.++..-+.++..||-+++.+-..|..+|++++..|+.+.. .|++-+-++..++.+|
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~-----------------------~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKR-----------------------LIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------------HHHHhHHHHHHHHhHH
Confidence 34444456677777777777777777777777766665552 3444445555666666
Q ss_pred HHHHHHHHHHHH
Q 013685 156 GQLRSALEIAET 167 (438)
Q Consensus 156 ~~Les~Ie~aE~ 167 (438)
++....++.+-.
T Consensus 138 eqaq~~~~El~~ 149 (907)
T KOG2264|consen 138 EQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHh
Confidence 666555554443
No 313
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.34 E-value=83 Score=25.48 Aligned_cols=52 Identities=6% Similarity=0.010 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 65 AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 65 ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
++..|..|+..+.-.+..+..+..-+.+-...|..|...+.-|...+...+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5567777777777777778888888888888888888888888877777764
No 314
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=62.22 E-value=1.9e+02 Score=29.48 Aligned_cols=63 Identities=25% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+.....+.-.++......|-+|+-.=..++..--..--.+.|++..|-..-+.|--|.+++.
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555544322222221111222344555555555555555555554
No 315
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.19 E-value=63 Score=34.52 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCc
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDL 128 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~ 128 (438)
...+..+..+++.+|..++..+..++.++...-.+.||.++.+|..
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~ 113 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPV 113 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3456677778888888888888888888888888888888877743
No 316
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.00 E-value=38 Score=26.62 Aligned_cols=62 Identities=29% Similarity=0.422 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
..++..+..++..++..|..++..+.+.+ |...+|.. =+..-...+..+..++..|...|..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~--F~~kAP~e--------------Vve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNEN--FVEKAPEE--------------VVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTT--HHHHS-CC--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc--ccccCCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555666666666555554 22222222 2333355666677777777666654
No 317
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.97 E-value=1.2e+02 Score=27.32 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 69 VEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 69 Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
|+.+...+.+..+-...+..++..++..+..+..++..++..+..+
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444433333333
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.79 E-value=2.9e+02 Score=31.53 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=8.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 013685 142 KHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 142 ~eL~~Eie~lk~EI~~Les~ 161 (438)
..|..++..++.++..++++
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~ 361 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKR 361 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 319
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.74 E-value=48 Score=32.58 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchh
Q 013685 201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLM 271 (438)
Q Consensus 201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~ 271 (438)
++++..+.++++..|+..+..+.++|.........|+.... ++..+.+.+-.+-+.|+.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e---------~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE---------GLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcccHHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888888888888888888887 677777777666666665543
No 320
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.68 E-value=2.6e+02 Score=31.04 Aligned_cols=117 Identities=26% Similarity=0.287 Sum_probs=66.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhh--hhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 143 HLEEELSSLKSEVGQLRSALEIAETKL--NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~aE~ri--qEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
-|...+..++.++.+|++.-+-+..+- =+.+. .+-...+..++...+..+.-+.+.+.
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~ke--------------------q~~y~~~~KelrdtN~q~~s~~eel~ 222 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKE--------------------QQLYGDCVKELRDTNTQARSGQEELQ 222 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766554331 01111 11123455566666666666666666
Q ss_pred cHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685 221 DKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 288 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK 288 (438)
-+-++|..+.+++..|...|- .+++++..+.-..+.+..-|-...-+-..+..+..++.
T Consensus 223 ~kt~el~~q~Ee~skLlsql~---------d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLV---------DLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 667777777777777777776 55555555555555555555444444444444444443
No 321
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=61.26 E-value=51 Score=26.99 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=44.7
Q ss_pred hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHH-HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK-LAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~-~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+.+.+..+..|+.||=.|+..|. -+...+.. ....+..+-.+-..++..+.++.-++..++..|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~---------fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIY---------FLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999998887 66666664 2445555555555666666666666666666665
No 322
>PLN02678 seryl-tRNA synthetase
Probab=61.13 E-value=66 Score=34.83 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
.++-.+...+.++..+++.++.+.+.+...|..+.. . ..+..+|..++..++.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~-----~----------------------~~~~~~l~~~~~~Lk~ 85 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKI-----A----------------------KEDATELIAETKELKK 85 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----C----------------------CCcHHHHHHHHHHHHH
Confidence 344455555556666666666666666555544321 1 2345667788888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 013685 154 EVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~ 174 (438)
+|..++..+..++.++++...
T Consensus 86 ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 86 EITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876544
No 323
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.33 E-value=1.2e+02 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESE 48 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~ 48 (438)
...+...++.++..+..+...+..+...+.++....
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554444
No 324
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.09 E-value=3.3e+02 Score=31.62 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHH
Q 013685 142 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKA 208 (438)
Q Consensus 142 ~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~ 208 (438)
.+|..++..-++++.+++.+.-.+--++.=..-.+.--.+ .+.+..+.+...+|+.++-+.=+..
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~ 158 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHS 158 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666555554444322111111122 5555666666666666665544433
No 325
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.82 E-value=91 Score=25.10 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKA 79 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~el 79 (438)
++.|..+|+....+...++..-..|..+...+......+..+.+.+...|+.+-+.+..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556666666666666666666666666666666666666666666666666555554443
No 326
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.62 E-value=1.3e+02 Score=32.83 Aligned_cols=98 Identities=7% Similarity=0.038 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIA 87 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~ 87 (438)
....+..++..++..+.++...+.-+..++.-+..-...+...+.. ...-+..+..........+.++...+..+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888877776554433222211 012334444555555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013685 88 SELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.++.++..+|..|+..+..+..
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666654
No 327
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.37 E-value=1.4e+02 Score=32.27 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~ 118 (438)
.++-.+.+.+...+...+.+..+...+-+.|...-....+ ....+..++..+..++..++..+..++.++..+--++
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666666522222221 3455666677777777777777777777777777777
Q ss_pred ccCCCCCCC
Q 013685 119 SQNCSGDYD 127 (438)
Q Consensus 119 ~~~~~~~~~ 127 (438)
||.++.++.
T Consensus 106 pNi~~~~VP 114 (429)
T COG0172 106 PNIPHESVP 114 (429)
T ss_pred CCCCccccC
Confidence 777775553
No 328
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.16 E-value=82 Score=24.97 Aligned_cols=39 Identities=36% Similarity=0.500 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
..+.++-..+.+-.++..+..+|..+|..++.++++++.
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666677777888888888888887765
No 329
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=59.04 E-value=1.1e+02 Score=34.16 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHH
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEE 146 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~ 146 (438)
..++.++..+.+.+...+....+|. .+.++..+...|.+|... +... -.++.+.+.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~--~ik~---------------------p~~i~~~~~ 219 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKK--DIKN---------------------PLELQKIKE 219 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhc--cCCC---------------------HHHHHHHHH
Confidence 3444555555555555555555554 355666666666666552 2221 235667777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+++.++.++......|..+-.+++..
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~~~ 245 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777776666665554443
No 330
>PF15456 Uds1: Up-regulated During Septation
Probab=58.76 E-value=1.1e+02 Score=27.42 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=20.0
Q ss_pred hcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 134 ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 134 ~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
+-+.-+|+.+|+.++..+..-|+.++..|. ++++|.+
T Consensus 17 eiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~Rd 53 (124)
T PF15456_consen 17 EILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRD 53 (124)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344455556566655555555555555555 4554444
No 331
>PRK02119 hypothetical protein; Provisional
Probab=58.76 E-value=98 Score=25.15 Aligned_cols=54 Identities=6% Similarity=0.027 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 63 ETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 63 E~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
..++..|..|+..+.-.+..+..+..-+.+-...|..|...+.-|...+...+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777777777777777777777888888888877777766663
No 332
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=58.62 E-value=1.5e+02 Score=27.15 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcch
Q 013685 51 AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQ 130 (438)
Q Consensus 51 A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~ 130 (438)
++.-++....+|..+...|-++..++...+-.|.+-..+|++-...+.. +++...+. + .+.+|...+
T Consensus 6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e---------ae~k~~~~-~---a~~P~~~~~ 72 (136)
T PF11570_consen 6 AERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE---------AEIKQDEF-F---ANNPPHEYG 72 (136)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHCCC-C---TT-TTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------HHhccccc-c---cCCCccccc
Confidence 3444455667777778888888888888888888877777777666655 33444442 1 222221110
Q ss_pred hhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 131 KIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 131 ~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.-...++..+.-+|..-...+..+..++++...
T Consensus 73 -----------~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~ 105 (136)
T PF11570_consen 73 -----------RGWQLKVRRAQKDVQNKQNKLKAAQKELNAADE 105 (136)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 112255666777777778888888888777665
No 333
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.54 E-value=2.2e+02 Score=29.08 Aligned_cols=117 Identities=26% Similarity=0.321 Sum_probs=77.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhh------hhhhcH--HHHHHHHHHHHHH-HhhhhhcHHHHHHHHHHHHHHH
Q 013685 142 KHLEEELSSLKSEVGQLRSALEIAETKLNE------GQIQST--VKIKSAFEQLEQI-KHQSGLREVELEAELQKAKSDI 212 (438)
Q Consensus 142 ~eL~~Eie~lk~EI~~Les~Ie~aE~riqE------e~~e~~--~elr~a~E~le~~-K~e~~~ri~Ele~eie~~~~eL 212 (438)
|.|.-....+|.++.+-...|+.+-.+|.. -+..+. ..-|-.|..-+.. +..+..||++|+.+|.=.++--
T Consensus 173 PAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~s 252 (330)
T KOG2991|consen 173 PAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQS 252 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhH
Confidence 345566777788888887777777666641 111111 2222222222222 3467889999999999999999
Q ss_pred HHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 013685 213 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK 267 (438)
Q Consensus 213 eELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lk 267 (438)
++|+....++..=+++|-++.+..++-|- -|..+|+..+.+|++|+
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTil---------iLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTIL---------ILQQKLKETRKEIQRLK 298 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHH---------HHHHHHHHHHHHHHHHH
Confidence 99999988888888888888777777776 55566555555555444
No 334
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=58.07 E-value=1.2e+02 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 59 LLQLETAKLSVEAL--RAEGMKAIEAYSSIASELERSRTRINLL 100 (438)
Q Consensus 59 ~~qLE~ae~~Ie~l--e~ei~elee~~~sl~~ELee~~~eI~~L 100 (438)
..++..++..++.+ ..++..+.-.+..+..++..+.++|..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333444444 4444444444444444444444443333
No 335
>PRK04406 hypothetical protein; Provisional
Probab=57.61 E-value=1.1e+02 Score=25.16 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.++..|..|+..+.-.+.-+..+..-+.+-...|..|...+.-|...+...+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566666777777777777777777777777777777777777777766653
No 336
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.55 E-value=30 Score=30.29 Aligned_cols=49 Identities=31% Similarity=0.289 Sum_probs=35.1
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
++-.++..++..|..+-.+|.+||..+..+-.|-+.|+=||..|+.-+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777788888877777777777777777777766665
No 337
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.08 E-value=2.5e+02 Score=29.22 Aligned_cols=93 Identities=23% Similarity=0.197 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA--------RETLLQLETAKLSVEALRAEGMKAIEA-Y 83 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~--------eE~~~qLE~ae~~Ie~le~ei~elee~-~ 83 (438)
..++..+-.+|+..+...-.....+...+..++..--.++... +.+..+|..++.+-+.|-.....=++. -
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt 108 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT 108 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555554443333333 226777777777777775444443332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013685 84 SSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~ 105 (438)
+++...|.+++.+-..|+..+.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666555555443
No 338
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.95 E-value=1.3e+02 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=16.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 142 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 142 ~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
-.+...|..-+.++.++...+..-+..+.....
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~ 42 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQREEELEKKEQ 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444333
No 339
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.92 E-value=1.2e+02 Score=25.71 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESK 45 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~ 45 (438)
..++.++..+..+...+..+..++.++.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444443
No 340
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.52 E-value=77 Score=25.15 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
.+..+|....+..-.+..+|.+-+.+...|..+|..|+.++..
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777777777777777777777777764
No 341
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=55.91 E-value=2.7e+02 Score=29.38 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE-- 89 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E-- 89 (438)
|.+.+..+|-.+++=+..+-..+..+..=+..++++-.+.+..++.+..+....+.+--+|..++.+...-...+..+
T Consensus 107 qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 107 QNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 90 ---------LERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 90 ---------Lee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
|+....-|..|+..|..|.-+|.++
T Consensus 187 atf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 187 ATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 342
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=55.89 E-value=2.5e+02 Score=28.88 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=5.6
Q ss_pred HHHHHhhhhhchHH
Q 013685 354 AEAELRRLKVQSDQ 367 (438)
Q Consensus 354 ~eae~~rl~vq~~q 367 (438)
+.-++..++.|+++
T Consensus 284 ~~~~~~~~~~k~~k 297 (309)
T PF09728_consen 284 LEKELEKLKKKIEK 297 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 343
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.87 E-value=1.3e+02 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
++-+.-|..+++.++..+..+...|..+...++....
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777777766666665544
No 344
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=55.79 E-value=2.7e+02 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 013685 94 RTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~ 113 (438)
-+++..|+..|..|+.-|..
T Consensus 208 la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 35777777777777776665
No 345
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.50 E-value=1.1e+02 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
.+|.-|+..+...+..+..+...++
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 346
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.36 E-value=51 Score=32.91 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=40.8
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK 191 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K 191 (438)
-+.+|..+|+.++.||.+|++.|+...-+++..+. +-+..|.+|+++.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~----rq~~~y~dld~r~ 102 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE----RQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45688999999999999999999999988888777 7777888888764
No 347
>PF15456 Uds1: Up-regulated During Septation
Probab=54.96 E-value=1.3e+02 Score=27.09 Aligned_cols=45 Identities=36% Similarity=0.409 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhh
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSG 195 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~ 195 (438)
.++++++-|+..|.++|+.+-..|. +.. .++.+-..+-..-....
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~----k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LES----KIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHhcCCCc
Confidence 4677778888888888887777776 444 55655555555444333
No 348
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.81 E-value=1.4e+02 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 55 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~ 55 (438)
.+...++.++..|......+..+...+.++...........
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666777777777777777766666665555555543
No 349
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.26 E-value=3.6e+02 Score=30.26 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013685 273 KETELQNISEENEMLKLEIS 292 (438)
Q Consensus 273 le~~l~~L~eEieeLKsEI~ 292 (438)
.+..+..|..++..++.++-
T Consensus 340 ~~~~~~~Le~~~~~l~~~~~ 359 (557)
T COG0497 340 SEESLEALEKEVKKLKAELL 359 (557)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554
No 350
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=53.54 E-value=1.1e+02 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
+...+..++.++..|...+..+...+.+
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e 31 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAE 31 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 351
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.52 E-value=2.5e+02 Score=28.01 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=14.5
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
.+|-.+++++..+...+|-+..+...++.-|.
T Consensus 93 qeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 93 QEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444444455544444444444433
No 352
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=52.50 E-value=1.4e+02 Score=25.12 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
..++.++..+...+..+..+|++..++...|+.--.++...+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777888888888888888888887776666655443
No 353
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.90 E-value=3.7e+02 Score=29.71 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred cCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHH
Q 013685 120 QNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREV 199 (438)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~ 199 (438)
||++..+. +..---.+.|..++.--..++.+-+.+|..+..++.+++ -...+--.-|+.+.++-.+++.||=
T Consensus 322 np~s~kli-------PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiL 393 (508)
T KOG3091|consen 322 NPPSNKLI-------PVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRIL 393 (508)
T ss_pred CCCccccc-------ceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHH
Q 013685 200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN 279 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~ 279 (438)
-+-..++-++.-=--|...+. +|+.+++.+-..++.= +.+..+++.
T Consensus 394 Rv~ikqeilr~~G~~L~~~EE------------------------------~Lr~Kldtll~~ln~P----nq~k~Rl~~ 439 (508)
T KOG3091|consen 394 RVMIKQEILRKRGYALTPDEE------------------------------ELRAKLDTLLAQLNAP----NQLKARLDE 439 (508)
T ss_pred HHHHHHHHHhccCCcCCccHH------------------------------HHHHHHHHHHHHhcCh----HHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 013685 280 ISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 326 (438)
Q Consensus 280 L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~ 326 (438)
|.+.+..-.+.+. --....+......+.-.-=+-+.|++.||.++
T Consensus 440 L~e~~r~q~~~~~--~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~I 484 (508)
T KOG3091|consen 440 LYEILRMQNSQLK--LQESYWIDFDKLIEMKEHLTQEQEALTKLVNI 484 (508)
T ss_pred HHHHHHhhcchhc--cccceeechhhhHHHHHHHHHHHHHHHHHHHH
No 354
>PRK00106 hypothetical protein; Provisional
Probab=51.47 E-value=3.9e+02 Score=29.81 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=22.0
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHH----HhccCC---CCcccccccC
Q 013685 350 ANCEAEAELRRLKVQSDQWRKAAEAAAS----MLSTGN---NGKCMERSGS 393 (438)
Q Consensus 350 a~~~~eae~~rl~vq~~qwrkaae~aaa----~l~~g~---~g~~~er~gs 393 (438)
|+..-+...+++=+++=| |=|++-++- |+.-.| -||+..|-|-
T Consensus 197 a~~~a~~~a~~ii~~aiq-r~a~~~~~e~tvs~v~lp~demkGriIGreGr 246 (535)
T PRK00106 197 VKDRSDKMAKDLLAQAMQ-RLAGEYVTEQTITTVHLPDDNMKGRIIGREGR 246 (535)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcchhhhhheeeeEEcCChHhhcceeCCCcc
Confidence 444444555555555444 444444433 332233 5788887773
No 355
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.08 E-value=3.3e+02 Score=29.15 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=45.2
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 218 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~ 218 (438)
..+..|..++.+++.....|...|+.+...++-...- .-+.++..+--+..=+..+..-++-...+|..||..
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~-------~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqe 284 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQF-------ILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQE 284 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777776666666655422221 111111111111111222233334456677777777
Q ss_pred hccHHHHhhhhHHhh
Q 013685 219 LMDKETELQGISEEN 233 (438)
Q Consensus 219 l~d~E~ELq~L~eEr 233 (438)
+.+.|+.++-...+|
T Consensus 285 La~~EEK~~Yqs~eR 299 (395)
T PF10267_consen 285 LASMEEKMAYQSYER 299 (395)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777666655554
No 356
>PLN02320 seryl-tRNA synthetase
Probab=51.00 E-value=1e+02 Score=34.00 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG 129 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~ 129 (438)
....+..++..++.+|..|+..+..++.++..+--.+||.++.+|...
T Consensus 131 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G 178 (502)
T PLN02320 131 ERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVG 178 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 345677788888999999999999999999998888999988887543
No 357
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=50.95 E-value=1.4e+02 Score=24.53 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 33 LMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRA--EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 33 ~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~--ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
.+.-+.--++.+...+.....-+..+..+++.....+..+.. .+.....-.. ....|..++.+|..+...+..++..
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555556666666666666655554 2222222222 6666666666666666666666666
Q ss_pred hhhc
Q 013685 111 TSNA 114 (438)
Q Consensus 111 I~~~ 114 (438)
+.++
T Consensus 87 ~~~L 90 (92)
T PF14712_consen 87 ADKL 90 (92)
T ss_pred HHhh
Confidence 5544
No 358
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=50.83 E-value=3.6e+02 Score=29.28 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 88 SELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
-.+..++.+|..|+..|......+..
T Consensus 314 PqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 314 PLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667777777777777777777654
No 359
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.73 E-value=1.3e+02 Score=32.26 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
...|..++..++.+|..++..+..++.++++...
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888888888888888876544
No 360
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.51 E-value=1.1e+02 Score=24.08 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=30.5
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQS 194 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~ 194 (438)
.+.+|...+..|.+.|.+|.+.+..+...++..+. +-.++-..|++.-..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~----EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE----EAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHhhc
Confidence 35556666666666666666666666666655544 5555666666654443
No 361
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.01 E-value=71 Score=35.79 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 212 IEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 212 LeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
|.+++--+.-..-||.++.-.|.+|+++|.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~ 110 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIE 110 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444444445556666666666666665
No 362
>PRK11519 tyrosine kinase; Provisional
Probab=49.93 E-value=2.3e+02 Score=32.26 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.-+.-++..+..++.+++.+|..++.-+.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777766544
No 363
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.76 E-value=1.2e+02 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013685 67 LSVEALRAEGMKAIEAY 83 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~ 83 (438)
.+|+.+...+.++..-|
T Consensus 28 ~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 28 ESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 364
>PRK04325 hypothetical protein; Provisional
Probab=49.72 E-value=1.4e+02 Score=24.27 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
...|..|+..+.-.+..+..+..-+.+-...|..|...+.-|...+...+
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666667777777777777777777777777766666655
No 365
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.67 E-value=2.4e+02 Score=26.86 Aligned_cols=26 Identities=15% Similarity=-0.056 Sum_probs=12.8
Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHH
Q 013685 136 QDTMESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
+-+.=..||.+++.--=+|-|.|=.+
T Consensus 63 ly~~~F~ELIRQVTi~C~ERGlLL~r 88 (189)
T PF10211_consen 63 LYSQCFDELIRQVTIDCPERGLLLLR 88 (189)
T ss_pred HHHHHHHHHHHHHHhCcHHHhHHHHH
Confidence 33444555666665545554444333
No 366
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=49.29 E-value=78 Score=32.81 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=13.4
Q ss_pred HHHHhhhhhchHHHHHH
Q 013685 355 EAELRRLKVQSDQWRKA 371 (438)
Q Consensus 355 eae~~rl~vq~~qwrka 371 (438)
.-++-||++|||.||--
T Consensus 204 ~Eq~erl~iqcdVWrsK 220 (383)
T KOG4074|consen 204 DEQSERLRIQCDVWRSK 220 (383)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34457999999999953
No 367
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.16 E-value=2.1e+02 Score=32.55 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=57.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHh
Q 013685 148 LSSLKSEVGQLRSALEIAETKLNEGQIQST-VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL 226 (438)
Q Consensus 148 ie~lk~EI~~Les~Ie~aE~riqEe~~e~~-~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~EL 226 (438)
+.-+...+..++..+..+|..++.-..+.. .++... -...-.++.+++.++..++..+.++....-+.-=.+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~e-------a~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v 341 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLE-------AKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTY 341 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchH
Confidence 445556666666666666666655444221 011000 001112234455555555555555544444444444
Q ss_pred hhhHHhhHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHH
Q 013685 227 QGISEENEGLHMQLDK-NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 278 (438)
Q Consensus 227 q~L~eEre~L~~ei~~-~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~ 278 (438)
+.|..++..|..++.. ......-+....++..+.++++-.+...+.+-.+.+
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544441 111223345555666666666655555555554444
No 368
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.08 E-value=1.7e+02 Score=25.14 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMEN----MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Iee----lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
..|+.-+..+......+.. ++..-..+..........+.+.......+....+.-.........++..+..+|..+
T Consensus 14 ~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l 93 (126)
T PF13863_consen 14 LALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEEL 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333 333333444444444445555556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 013685 94 RTRINLLEGLVSKLE 108 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe 108 (438)
...+..++..|....
T Consensus 94 ~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 94 KSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 369
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.04 E-value=48 Score=29.21 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=36.8
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
++=.++..++..|..+-.++.+||..+.++-.|-+.|+-||+.|+..+.
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777788888888888888888777777777777777777766
No 370
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=48.59 E-value=2.7e+02 Score=27.22 Aligned_cols=132 Identities=20% Similarity=0.321 Sum_probs=63.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccH
Q 013685 143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDK 222 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~ 222 (438)
.+......+..-+..|.+++..++..++++... ....++.....+...+.+|...+..-+....+....++.+
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~-------r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr 154 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE-------RPQDIEELNQELVRELNELQEAFENERNEREEREENILKR 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777665542 2233344444555555555555555444444444433322
Q ss_pred HHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHH-HHHHHHHHHHHHh
Q 013685 223 ETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN-ISEENEMLKLEIS 292 (438)
Q Consensus 223 E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~-L~eEieeLKsEI~ 292 (438)
=.++ --.+...|...- . .=...+..+...++.+...-..-...+.. +..|+..++..|.
T Consensus 155 l~e~------~~~l~~~i~~Ek-~----~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 155 LEEE------ENRLQEKIEKEK-N----TRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHH------HHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2111 112222222000 0 11223334444444444444444455555 6667777666554
No 371
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.28 E-value=67 Score=28.09 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL 259 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~ 259 (438)
.++-..|..+...|..+-..+..+...+..|.+||-.|+.+-. .|+..+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~---------~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE---------HLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3567788888888999999999999999999999988887776 555555544
No 372
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.25 E-value=2.7e+02 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRE-----------SKESETQAQALARETLLQ 61 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~d-----------l~~e~~~A~~~~eE~~~q 61 (438)
|.-.|+-+|..++..|..+...... ++.+..+.+.|....+..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~ 150 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRE 150 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555544443 244445555555443333
No 373
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.86 E-value=1.7e+02 Score=25.41 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESET 49 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~ 49 (438)
+...++.+...+..+...+..+...+.++.....
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~ 37 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIE 37 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666655543
No 374
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=47.79 E-value=2.3e+02 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=18.7
Q ss_pred hhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 133 KENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 133 ~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
.+.-.++-+.-|+.+++.+...+..+...|..+..+++.
T Consensus 88 ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~ 126 (145)
T COG1730 88 AEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126 (145)
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555555544444443
No 375
>PRK10869 recombination and repair protein; Provisional
Probab=47.54 E-value=4.3e+02 Score=29.25 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 72 LRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 72 le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+......+-..|..+..+|.++..........+.-|+-.+..+.
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555565555555555555555555555555
No 376
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=47.53 E-value=1.6e+02 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 65 AKLSVEALRAEGMKAIEAYSSIASELER 92 (438)
Q Consensus 65 ae~~Ie~le~ei~elee~~~sl~~ELee 92 (438)
....+..+...+..+...+..+..+++.
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 377
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.00 E-value=58 Score=32.04 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
+-.+..+|.+++.+|+.++..+.-|...+.=.
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 34455556666666666666666666654433
No 378
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=46.71 E-value=23 Score=22.93 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 013685 154 EVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe 172 (438)
||.+++++|.+++.++++.
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766553
No 379
>PF15294 Leu_zip: Leucine zipper
Probab=46.58 E-value=3.4e+02 Score=27.78 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=10.7
Q ss_pred ccchHHHHHHHHhhHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVG 156 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~ 156 (438)
..++..|...+.-++.++.
T Consensus 189 ~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 189 AQDLSDLENKMAALKSELE 207 (278)
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4455566666666665443
No 380
>PLN02320 seryl-tRNA synthetase
Probab=46.53 E-value=1.4e+02 Score=33.00 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=28.0
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.+..+|..+...++.+|..|+..+..++.+++++..
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888888776554
No 381
>PRK00846 hypothetical protein; Provisional
Probab=46.43 E-value=1.7e+02 Score=24.28 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 62 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
-..+...|..|+..+.-.+..+..+...+......|..|...+.-|...+....+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666777777777777777777777777777777777777777777777664
No 382
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.37 E-value=2.4e+02 Score=26.03 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 013685 150 SLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 150 ~lk~EI~~Les~Ie~aE~riq 170 (438)
.|+..|..|...+..+...|+
T Consensus 55 eLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 55 ELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433
No 383
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.28 E-value=4.2e+02 Score=28.75 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 36 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 36 elr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kL 107 (438)
+...++-++...+++-...++.+-.|+-..+.+-+.+.+-+...+-+++.+..|..++..+..+.+....-+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555555555555444443333333
No 384
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.10 E-value=1.8e+02 Score=26.15 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
|..++.--...+...+..+..+.+.+...+...-.+..+++.++..--.|...+-.+....+-+...--.+..+-..|..
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~ 114 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRK 114 (141)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444444555666666666666666666566566777777777777777777766665555444443334444444445
Q ss_pred HHHHHHHHhhhc
Q 013685 103 LVSKLEADTSNA 114 (438)
Q Consensus 103 ei~kLe~eI~~~ 114 (438)
.+..|..++..+
T Consensus 115 ~le~l~~~l~~p 126 (141)
T PF13874_consen 115 RLEALEAQLNAP 126 (141)
T ss_dssp ------------
T ss_pred HHHHHHHHHcCc
Confidence 555555544443
No 385
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=46.09 E-value=1.5e+02 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
+.||++..++|..|+..|.+++..
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777888888888888886643
No 386
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.55 E-value=2.3e+02 Score=25.47 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
+|..+++.+.-.|..|++..+....+|.+++.
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555544444444443
No 387
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=4.8e+02 Score=29.12 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
+..++-+...+...-.+...++..+.++..+..+-....+.. ++..+.........+..-|+.++.++.+.+.
T Consensus 345 ~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teqk-------leelk~~f~a~q~K~a~tikeL~~El~~yrr 417 (613)
T KOG0992|consen 345 ETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQK-------LEELKVQFTAKQEKHAETIKELEIELEEYRR 417 (613)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666665544433322211 2333444444444455556666666666665
Q ss_pred hhccHHHHhhh
Q 013685 218 NLMDKETELQG 228 (438)
Q Consensus 218 ~l~d~E~ELq~ 228 (438)
+.-.-.+++.+
T Consensus 418 ~i~~~~s~ia~ 428 (613)
T KOG0992|consen 418 AILRNASEIAQ 428 (613)
T ss_pred hccccccccCC
Confidence 55544444443
No 388
>PRK15396 murein lipoprotein; Provisional
Probab=45.35 E-value=1e+02 Score=25.67 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=39.1
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQS 194 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~ 194 (438)
.++.+|..++..+.+.+.++.+.+.++...++..+. +-.++-..|++.-..+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~----eA~raN~RlDn~~~sy 76 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD----DAARANQRLDNQATKY 76 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 367788888888888888888888888888777665 6666667777665544
No 389
>PF15294 Leu_zip: Leucine zipper
Probab=45.29 E-value=3.6e+02 Score=27.64 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH
Q 013685 137 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 177 (438)
Q Consensus 137 ~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~ 177 (438)
.++.++-|..+|..++.|-..|++++-..+........+++
T Consensus 123 e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~ 163 (278)
T PF15294_consen 123 ESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS 163 (278)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999988776655444
No 390
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=45.26 E-value=5e+02 Score=29.31 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
.....+....++..+-.|++++..++.+...+..++..++-.=..-+.....+...++.....+..+.+....++.+.-.
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777888888899999999999999988888777776666666666666666666655555544444444444333
Q ss_pred HHHHH
Q 013685 103 LVSKL 107 (438)
Q Consensus 103 ei~kL 107 (438)
.+.+|
T Consensus 492 al~el 496 (607)
T KOG0240|consen 492 ALEEL 496 (607)
T ss_pred HHHHH
Confidence 33333
No 391
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.19 E-value=4.4e+02 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=17.0
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
++.+|...|+++..-+-.+...-+.+-..++....
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~ 208 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKK 208 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44445555555544444444444444445544443
No 392
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.01 E-value=3.2e+02 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
.++..+..+..++.+.+.-|..||.++..++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555555555555555555555555543
No 393
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.90 E-value=4.2e+02 Score=28.39 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIAS 88 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ 88 (438)
...+..++..++.....+...++.++.++.. +..-....+.+ ...=-+.+...++-...++..+..++.++..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~---e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQR---EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556666666666666666666554321 11111111111 1122223334444455555555555555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 89 ELE-RSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 89 ELe-e~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.|+ ++..+...+.+-++..+..|..++
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555 455566666666666666666666
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.85 E-value=1.4e+02 Score=33.36 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685 84 SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 163 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie 163 (438)
.....++..++.+|..|+..+..|+..+..... |. .-....+.+|..++..++.++..+..+-+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~~w~ 622 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSEL----YD------------QSRKAELTACLQQQASAKSGLEECEMAWL 622 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh----cc------------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456667777777777777777777654331 00 00012567777777777777777777777
Q ss_pred HHHHhhhh
Q 013685 164 IAETKLNE 171 (438)
Q Consensus 164 ~aE~riqE 171 (438)
.+...+.+
T Consensus 623 ~l~~~~~~ 630 (638)
T PRK10636 623 EAQEQLEQ 630 (638)
T ss_pred HHHHHHHH
Confidence 66665544
No 395
>PRK02119 hypothetical protein; Provisional
Probab=44.77 E-value=1.7e+02 Score=23.81 Aligned_cols=23 Identities=0% Similarity=0.206 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013685 86 IASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 86 l~~ELee~~~eI~~LE~ei~kLe 108 (438)
-..+++.+...+..|-..+..+.
T Consensus 35 Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 35 QQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333444444444444443433
No 396
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.69 E-value=5.7e+02 Score=29.81 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKE 274 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le 274 (438)
++.+..+.+...+++|+..+..++
T Consensus 234 ~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 234 EMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666667777777777777666666
No 397
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=44.46 E-value=4.6e+02 Score=28.73 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 013685 15 SAHLELQSLKGNLIETIS----LMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEG-------MKAIEAY 83 (438)
Q Consensus 15 ~a~~ELe~lre~L~~~e~----~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei-------~elee~~ 83 (438)
....+++.=|.+..+.++ +-+++|..|.. .+..+....-+ |..=+.--++|..-+ ..+.+.|
T Consensus 274 ~~~~~le~er~~wtE~ES~WIsLteeLR~dle~---~r~~aek~~~E----L~~Ek~c~eEL~~al~~A~~GhaR~lEqY 346 (488)
T PF06548_consen 274 NAEEELEQERQRWTEAESKWISLTEELRVDLES---SRSLAEKLEME----LDSEKKCTEELDDALQRAMEGHARMLEQY 346 (488)
T ss_pred chhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHH---HHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666654 45555554443 33333333322 222222222222222 3445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccccc-chHHHHHHHHhhHHHHHHHHHHH
Q 013685 84 SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM-ESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~-Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
..+...-..+-++=..+-+=|..+.......+. .-.++ =++-|-++|+-++.|-+.-+.-+
T Consensus 347 adLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~------------------kG~~~rF~~slaaEiSalr~erEkEr~~l 408 (488)
T PF06548_consen 347 ADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGV------------------KGAESRFINSLAAEISALRAEREKERRFL 408 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666667777777776666664 11111 24556666666666644433333
Q ss_pred HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhh
Q 013685 163 EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK 242 (438)
Q Consensus 163 e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~ 242 (438)
. +++.....+++..-|.+.-. .+|-..|+..+....--+.+-++.+.+-..+..+.+.|+.....
T Consensus 409 ~-------~eNk~L~~QLrDTAEAVqAa--------gEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~ 473 (488)
T PF06548_consen 409 K-------DENKGLQIQLRDTAEAVQAA--------GELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKM 473 (488)
T ss_pred H-------HHhHHHHHHHHhHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22333334666666655433 56777777777777777777777777777888888888887775
Q ss_pred hhhhhhhhh
Q 013685 243 NLMCQRESQ 251 (438)
Q Consensus 243 ~~~~~~~~e 251 (438)
.+.+.++|=
T Consensus 474 Ei~t~kq~l 482 (488)
T PF06548_consen 474 EISTMKQYL 482 (488)
T ss_pred HHHHHHHHH
Confidence 555555443
No 398
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=43.92 E-value=2e+02 Score=26.97 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI-ASEL 90 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl-~~EL 90 (438)
+.....+....+...|.++..-+...++++.+... .++++...++++..+++.+-+++.-..+.+... +..+
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~e-------elerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~v 117 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKE-------ELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIV 117 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHH
Confidence 34444445555555555555555566555555544 455666667777777777777776666655433 3368
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 91 ERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 91 ee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
+.+...|..+...++-...++..+-.
T Consensus 118 eel~eqV~el~~i~emv~~d~~~l~g 143 (157)
T COG3352 118 EELEEQVNELKMIVEMVIKDLRELYG 143 (157)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhcC
Confidence 89999999999999988888887773
No 399
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.73 E-value=1.7e+02 Score=31.27 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
...|..++..++.+|..++..+..++.++++...
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888999988888888888876544
No 400
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.56 E-value=52 Score=35.87 Aligned_cols=24 Identities=4% Similarity=0.248 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 197 REVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~ 220 (438)
+..+|+.+|+.++.+++.+.....
T Consensus 77 kasELEKqLaaLrqElq~~saq~~ 100 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRG 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444444444433333333
No 401
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=43.09 E-value=3.9e+02 Score=27.51 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHH
Q 013685 81 EAYSSIASELERSRTRINLLEGLV--------------SKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEE 146 (438)
Q Consensus 81 e~~~sl~~ELee~~~eI~~LE~ei--------------~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~ 146 (438)
.....++.||+.+++.|......+ .+++.+++-++ |++ --.+++.
T Consensus 212 a~K~DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~-------SKS--------------~~~~it~ 270 (290)
T COG1561 212 AQKADIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLG-------SKS--------------NAAEITA 270 (290)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhh-------hcc--------------chHHHHH
Confidence 355667777777777777766665 23334444444 222 1235677
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 013685 147 ELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~a 165 (438)
-.-++|..|++.+-.+.+.
T Consensus 271 ~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 271 AVVELKVLIEQMREQVQNI 289 (290)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7777788888877776653
No 402
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.08 E-value=4.9e+02 Score=28.62 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 157 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~ 157 (438)
........+..+++.....+..+......+... ..++..+..++..+..++..
T Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~l~~~~~~~~~~~~~~~~ 85 (475)
T PRK10361 33 EQLAEREEMVAELSAAKQQITQSEHWRAECELL---------------------------NNEVRSLQSINTSLEADLRE 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhcH---HHHHHHHHHH------HHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHH---
Q 013685 158 LRSALEIAETKLNEGQIQST---VKIKSAFEQL------EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETE--- 225 (438)
Q Consensus 158 Les~Ie~aE~riqEe~~e~~---~elr~a~E~l------e~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~E--- 225 (438)
++.+++.......+.....+ .++...|+.+ ++.+.=..++...+..-|+=++..|..++..+.+.+..
T Consensus 86 l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 86 VTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------hhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHH
Q 013685 226 --------LQGISEENEGLHMQLDKNLMCQRESQLNNDLR 257 (438)
Q Consensus 226 --------Lq~L~eEre~L~~ei~~~~~~~~~~el~~el~ 257 (438)
|..|.+-+..+..+.. .|...|.
T Consensus 166 ~~~~L~~qi~~L~~~n~~i~~ea~---------nLt~ALk 196 (475)
T PRK10361 166 ERHTLAHEIRNLQQLNAQMAQEAI---------NLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHc
No 403
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.76 E-value=1.7e+02 Score=23.28 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 21 QSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVE 70 (438)
Q Consensus 21 e~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie 70 (438)
+.++++|.+++..+++...+++.++...+.....+..+..+|..++....
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666666665544444444444444444444433
No 404
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=42.72 E-value=23 Score=30.68 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHH
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 278 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~ 278 (438)
..++.....++.+|++|-+.|++=- |... . ..+.+...+......|+.+|.+.+..++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEA---------N~MV----a---------~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEA---------NKMV----A---------DARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH----H---------HHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665211 1111 1 5666777777888888888999888888
Q ss_pred HHHHHHHHHHHHHhhccccC
Q 013685 279 NISEENEMLKLEISKRELDT 298 (438)
Q Consensus 279 ~L~eEieeLKsEI~~~~~~~ 298 (438)
.+..++..|+..+.....+.
T Consensus 69 ~lq~qL~~LK~v~~~~~~~~ 88 (100)
T PF06428_consen 69 SLQAQLKELKTVMESMESES 88 (100)
T ss_dssp HCTSSSSHHHHCTTT-----
T ss_pred HHHHHHHHHHHHHHHccccc
Confidence 88888889988888766543
No 405
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.67 E-value=2.9e+02 Score=28.42 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELER 92 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee 92 (438)
+++.-|..+..++...+++|.-...+.+-.-..++....+|+..+..++.|.+=.=..+.+|+....+|.+
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555444455555544444433
No 406
>PRK11519 tyrosine kinase; Provisional
Probab=42.67 E-value=5.6e+02 Score=29.19 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 013685 144 LEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~I 162 (438)
|..++..++.++..+++++
T Consensus 344 l~~~~~~L~~~~~~l~~~~ 362 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRV 362 (719)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 407
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.24 E-value=1.6e+02 Score=31.47 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhc-----HHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQS-----TVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDI 212 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~-----~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eL 212 (438)
+-..|.+..++..++.++..+...++.++..+....... ..+....+..+......+...+..+..++..++..+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578888888888888888888877777755443311 123344444444444444444444444444444444
Q ss_pred HH
Q 013685 213 EE 214 (438)
Q Consensus 213 eE 214 (438)
..
T Consensus 406 ~~ 407 (451)
T PF03961_consen 406 ER 407 (451)
T ss_pred Hh
Confidence 33
No 408
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.65 E-value=3.1e+02 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 43 ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 43 dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
.+..+-........++..+++.++.++..|......+++.|..+-.=|+.-+.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555566666777777777777777777777777666665543
No 409
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=41.57 E-value=2.3e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISL--MENMKNQLRESKESETQA 51 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~--Ieelr~qL~dl~~e~~~A 51 (438)
-.+.+||+.....+...+.. ...+...+.++..+...+
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~a 109 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAA 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555555544 445555444444433333
No 410
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=41.50 E-value=2.6e+02 Score=24.91 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEA-YSSIASELERSRTRINL-LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN 135 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~-~~sl~~ELee~~~eI~~-LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~ 135 (438)
+...+..+...++.+...+..+... ...+...++.+...|.. ++.....|...+.... .
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-------------------~ 63 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVK-------------------E 63 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------H
Q ss_pred ccccchHHHHHHHHhhHHHHHH-HHHHHHHHHHhhhhhhhhcHHHHHHHH-HHHHHHHhhhhhcHHHHHHHHHHHHHHHH
Q 013685 136 QDTMESKHLEEELSSLKSEVGQ-LRSALEIAETKLNEGQIQSTVKIKSAF-EQLEQIKHQSGLREVELEAELQKAKSDIE 213 (438)
Q Consensus 136 l~~~Ei~eL~~Eie~lk~EI~~-Les~Ie~aE~riqEe~~e~~~elr~a~-E~le~~K~e~~~ri~Ele~eie~~~~eLe 213 (438)
.....+..+...+...-..+.. +..++..+...+..... ++...+ ..++.....+...+.++...|. ..++
T Consensus 64 ~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~i~---~~l~ 136 (202)
T PF01442_consen 64 RIEERIEELKNSLDSSTSELDESLSERAEELKERLEARAE----ELESRLEEEVDELEESLESRSEELKEKIE---ERLE 136 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHH
Q ss_pred HHHHhhccHHHHhhh-hHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHH-HHHHHH
Q 013685 214 ELKANLMDKETELQG-ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN-ISEENE 285 (438)
Q Consensus 214 ELka~l~d~E~ELq~-L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~-L~eEie 285 (438)
.+...+...-.++.. |...-..+...+. .....=...++..+..++..+...-..+.. +...++
T Consensus 137 ~~~~~l~~~~~~~~~~i~~~~~~l~~~l~--------~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~ 202 (202)
T PF01442_consen 137 ELSEELTERAEELEAKISERLEELRESLE--------EKAEELKETLDQRIEELESSIDRISEDIEEALDQVIE 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 411
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.24 E-value=2.3e+02 Score=31.01 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
..++..+...++.++.++...|..+..++
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444433
No 412
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.05 E-value=55 Score=33.52 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=35.4
Q ss_pred HHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 013685 213 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL 266 (438)
Q Consensus 213 eELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~L 266 (438)
..+|+...++.+|+++|..+|+.|+.... ++.+++.-++.-|-.+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~---------~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQAS---------ELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999988 7777777776665443
No 413
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.01 E-value=2.6e+02 Score=26.92 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALA--RETLLQLETAKLSVEALRAEGMKAIEAYSS 85 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~--eE~~~qLE~ae~~Ie~le~ei~elee~~~s 85 (438)
.+++.+...+-.....+-.+....+..+.++......+ ++++..+..++.++...+..+..+.+.++-
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666666666666666666555555555555544444 444444444444444444444444444333
No 414
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.52 E-value=1.7e+02 Score=22.62 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 52 QALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 52 ~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
..+.......+..++..+..|..+...+...+..+..++.
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333333333
No 415
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.51 E-value=7.9e+02 Score=29.98 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
.++|..++....+.+..+...+-...+++
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35566666655555555555555444444
No 416
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=39.51 E-value=3.5e+02 Score=25.91 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 45 KESETQAQALARETLLQLETAKLSVEALRAEGM--KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 45 ~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~--elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++--.-.+...-+...+++.++.+.+-++..+. =+..--+=...+|.....+|.-|+-+|..|+..|....
T Consensus 60 Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~ 132 (181)
T PF04645_consen 60 EDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNK 132 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333344444445567777777777776665543 34444444667899999999999999999999988766
No 417
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=39.41 E-value=2.1e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE 57 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE 57 (438)
+=|..+..+.+.+-...+.+|.++..++.+.+.++=..+-
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DA 47 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDA 47 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3477888999999999999999999999999998866544
No 418
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.40 E-value=19 Score=31.32 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=0.0
Q ss_pred HHHHHhhhhhchHHHH
Q 013685 354 AEAELRRLKVQSDQWR 369 (438)
Q Consensus 354 ~eae~~rl~vq~~qwr 369 (438)
+..++..|+.|..+.|
T Consensus 112 l~~~~~~lk~~~~~~~ 127 (131)
T PF05103_consen 112 LREEIEELKRQAEQFR 127 (131)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555443
No 419
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=38.43 E-value=5.5e+02 Score=28.32 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 49 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 49 ~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
..--.|++.+...|......++-+...+..+...+.++..++.++.-.++.|-....+|+..|+.
T Consensus 428 k~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 428 KSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33456678888888888888888888888888888888888888888888888888777776665
No 420
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=38.08 E-value=6.9e+02 Score=28.91 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cccccccCCCCCCCcch
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN-------ANRNLSQNCSGDYDLGQ 130 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~-------~e~~~~~~~~~~~~~~~ 130 (438)
-...+..+...+..|+..+..++..+.....+|.....+-+-|...+++...+++- +..-.|...|..+....
T Consensus 160 Hq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~ 239 (739)
T PF07111_consen 160 HQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQA 239 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHH
Confidence 35556666667777777777777666666666666666666666666666655433 22111111111110000
Q ss_pred hhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh---------hhhhcH------------------------
Q 013685 131 KIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE---------GQIQST------------------------ 177 (438)
Q Consensus 131 ~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE---------e~~e~~------------------------ 177 (438)
-+.|-.+|..-+.-++.+-.-|...++-+-.+++. ..+-..
T Consensus 240 ------we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WRE 313 (739)
T PF07111_consen 240 ------WEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWRE 313 (739)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHH
Confidence 01223444444555555555555555555555442 111111
Q ss_pred ------HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 178 ------VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 178 ------~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
++++..-......+..+...+++|+.++.....+-.=|.-.+.|+.++|.-=+---..|+.++.
T Consensus 314 KVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELs 383 (739)
T PF07111_consen 314 KVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELS 383 (739)
T ss_pred HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333555667777788888888777777777777777777777654444444555554
No 421
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.80 E-value=3.2e+02 Score=24.89 Aligned_cols=55 Identities=22% Similarity=0.066 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
-.+..+|......|..|+.++.+.+..+.+-...|..++..+..+...+.+....
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566667777777777777777777777777777777777777777777765
No 422
>PHA02414 hypothetical protein
Probab=37.59 E-value=2.2e+02 Score=24.89 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-cH---------HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 153 SEVGQLRSALEIAETKLNEGQIQ-ST---------VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 153 ~EI~~Les~Ie~aE~riqEe~~e-~~---------~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
-+|..|=++++.++.++|+...- ++ .++|.-+..++..-+-.+++.+-+.-+|..++..|.+|...-.
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccc
Confidence 45677777888888888765432 22 4566666666666666677777777788888888877765443
No 423
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.23 E-value=4.4e+02 Score=26.34 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA--------------------------------------LA 55 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~--------------------------------------~~ 55 (438)
+.+..++..+...+.+...+|..+.+.|............ .+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4566677777777777777777777777766644111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
.=+..|..+.+....+|+.++.+....+..+..|++.++++=..|=+.|.=|+.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 115778888888888888888888888888888888888777777777777764
No 424
>PRK01203 prefoldin subunit alpha; Provisional
Probab=37.15 E-value=2.9e+02 Score=25.09 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=16.1
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+.+.-|+..+..+..-|......+......|+++
T Consensus 87 ~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 425
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.11 E-value=7.7e+02 Score=29.15 Aligned_cols=249 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-------
Q 013685 31 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEG--------MKAIEAYSSIASELERSRT------- 95 (438)
Q Consensus 31 e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei--------~elee~~~sl~~ELee~~~------- 95 (438)
+..|..++.+..++..++++....-..+..|+..++..+..|...+ +.+..-++.+...|+....
T Consensus 835 E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~q 914 (1480)
T COG3096 835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQQ 914 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh--
Q 013685 96 ---RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN-- 170 (438)
Q Consensus 96 ---eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq-- 170 (438)
-+..|+-..+-|+++.++-+ .|+..+.-...-..+++.++=.+-.-++
T Consensus 915 hG~tls~LEpia~~LqsDPe~~e---------------------------~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr 967 (1480)
T COG3096 915 HGNTLSKLEPIASVLQSDPEQFE---------------------------QLKEDYAQAQQMQRQARQQAFALTEVVQRR 967 (1480)
T ss_pred hcchHHhhhhHHHHHhCCHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ------------hhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHH
Q 013685 171 ------------EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHM 238 (438)
Q Consensus 171 ------------Ee~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ 238 (438)
-+..+..++++...++++.-..-..........++-..+.-+..|+..--.+-.-|+++..+...+--
T Consensus 968 ~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV 1047 (1480)
T COG3096 968 AHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGV 1047 (1480)
T ss_pred cccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHH
Q 013685 239 QLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARS 314 (438)
Q Consensus 239 ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~ 314 (438)
-.. ..-+..++..++++...+..-+.+-.-++..+-.+..+...|..-+.+.+-+ +-.....+-+||+
T Consensus 1048 ~AD----~gAeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErD----Y~~~Re~VV~AK~ 1115 (1480)
T COG3096 1048 RAD----SGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERD----YFEMREQVVTAKA 1115 (1480)
T ss_pred CcC----cchHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHhhc
No 426
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.85 E-value=5.9e+02 Score=27.74 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARE------------TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 97 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE------------~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI 97 (438)
.+.++..+..++.++.+++....++++. +..+++.++.+=..|...+.++...-..++..|.+.+.+-
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888898888888855 4555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 013685 98 NLLEGLVSKLEAD 110 (438)
Q Consensus 98 ~~LE~ei~kLe~e 110 (438)
.++..+-...-.+
T Consensus 221 ~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 221 ERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555444443
No 427
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=36.77 E-value=4.2e+02 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=17.1
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+.|..|+..|..+...+..++..+..+...|...
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~a 65 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDA 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544433
No 428
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.48 E-value=6.4e+02 Score=28.07 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 31 ISLMENMKNQLRESKESETQAQALA---RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELER 92 (438)
Q Consensus 31 e~~Ieelr~qL~dl~~e~~~A~~~~---eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee 92 (438)
..+|.++-.++..+. +++..|. .-+..+|..++...+.+..++..+...+..+..||.-
T Consensus 419 ~~RI~eLt~qlQ~ad---SKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 419 MSRIEELTSQLQHAD---SKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555 3344444 3355666666555555555555555544444444443
No 429
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.48 E-value=2.2e+02 Score=22.66 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 62 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
+..++..|...+..+..+-...-.-..+++.+...+..|...+..+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444445555555555555555544
No 430
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=36.43 E-value=7.2e+02 Score=28.61 Aligned_cols=142 Identities=16% Similarity=0.104 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK-------LSVEALRAEGMKAIEAYSSIAS 88 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae-------~~Ie~le~ei~elee~~~sl~~ 88 (438)
+.+.|..|...-+.+..++.=+..|+..-.+-|....-.+++...+|...+ -.+-+|+..--+++.+..++..
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL 188 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL 188 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence 334444444444444444444444444444444444444433222222221 1235666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 89 ELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 89 ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
.+..++.+-..-|+.+..-+..|.++..+- . .....+.++-.-.+.+.++++..|+......+.+
T Consensus 189 kltalEkeq~e~E~K~R~se~l~qevn~~k----v-----------~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e 253 (861)
T KOG1899|consen 189 KLTALEKEQNETEKKLRLSENLMQEVNQSK----V-----------GEVVQERLQYETKLKSTKGEMAPLREQRSEKNDE 253 (861)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHHHH----H-----------HHHHHHHHHHHhhcccccchhhhHHHHHhhhhhH
Confidence 777777777777776666666555554210 0 1224566666777778888888888777766665
Q ss_pred hhhh
Q 013685 169 LNEG 172 (438)
Q Consensus 169 iqEe 172 (438)
+..+
T Consensus 254 ~~rl 257 (861)
T KOG1899|consen 254 EMRL 257 (861)
T ss_pred HHHH
Confidence 4433
No 431
>COG5570 Uncharacterized small protein [Function unknown]
Probab=36.38 E-value=96 Score=24.13 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHc
Q 013685 251 QLNNDLRKLAQAVEDLKAN 269 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~ 269 (438)
+|+.+.-.+.+.|+.|+++
T Consensus 37 eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 37 ELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6666666777777777665
No 432
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.29 E-value=3.6e+02 Score=25.15 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 28 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kL 107 (438)
-.++..++.+-.+-....-+........+.+..+.+.-+..-...+..+..++ ..+..+-..+...|..|+.....|
T Consensus 32 V~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443334444444433333333333333333 223333334444455555555555
Q ss_pred HHHh
Q 013685 108 EADT 111 (438)
Q Consensus 108 e~eI 111 (438)
...+
T Consensus 109 ~~~~ 112 (158)
T PF09744_consen 109 ELKL 112 (158)
T ss_pred HHHh
Confidence 5433
No 433
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=35.85 E-value=3e+02 Score=26.32 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH-----HHHhhc
Q 013685 146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE-----LKANLM 220 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE-----Lka~l~ 220 (438)
.++..++++.+.+++.|.-.=.+ -...|-.++ -.++...|.-|..+|..++..+.. +...+.
T Consensus 75 ~~a~~~Kse~~~~r~~L~l~FI~-----------sf~~Y~~le--L~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~ 141 (181)
T PF04645_consen 75 AEARNAKSELEMERSNLELSFID-----------SFNQYKNLE--LKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIE 141 (181)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHH-----------HHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 45666777777776666532111 111121111 123455566677777777777765 334567
Q ss_pred cHHHHhhhhHHhhHHHHHHhh
Q 013685 221 DKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~ 241 (438)
.++.||..+..+++...+++.
T Consensus 142 slk~EL~d~iKe~e~~emeLy 162 (181)
T PF04645_consen 142 SLKSELNDLIKEREIREMELY 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987
No 434
>COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
Probab=35.68 E-value=43 Score=27.95 Aligned_cols=46 Identities=33% Similarity=0.572 Sum_probs=32.4
Q ss_pred HHHHHhhHHHHHHHhhhhhchHHHHHH-HHHHHHHhccCCCCcccccccCCCCCC
Q 013685 345 EAAQSANCEAEAELRRLKVQSDQWRKA-AEAAASMLSTGNNGKCMERSGSIDSNY 398 (438)
Q Consensus 345 ~a~~~a~~~~eae~~rl~vq~~qwrka-ae~aaa~l~~g~~g~~~er~gs~~~~~ 398 (438)
.-|-.+...+-+|+++. ++++|+-- +|+-|. || .||+++|+.+-.|
T Consensus 31 NiS~~~et~ia~e~~k~--~t~~WqeEN~EaiA~----~n--~~vd~~G~~~a~~ 77 (80)
T COG5302 31 NISALAETAIAAELRKS--ATDRWQEENAEAIAT----GN--RFVDVNGLFLAKY 77 (80)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHH----Hh--hhhhhcCChhhhc
Confidence 34556678889999876 68999976 554333 33 4899999876544
No 435
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.64 E-value=5.4e+02 Score=26.96 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=35.6
Q ss_pred chHHHHHHHHhhH---HHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH
Q 013685 140 ESKHLEEELSSLK---SEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE 214 (438)
Q Consensus 140 Ei~eL~~Eie~lk---~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE 214 (438)
-+|.|-.++..|+ .+....-..|..++........ .++..-..|..+.....++..-+...++.++..|..
T Consensus 313 ~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~----~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 313 SLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQS----QLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAK 386 (388)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666655554 3444455555555555444444 455555555555555444444444444444444443
No 436
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.39 E-value=5.6e+02 Score=27.05 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 24 KGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL 103 (438)
Q Consensus 24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e 103 (438)
.+-|..++..|..++.++..+..++........... ......++.....+.++...+..+...=.+++.-|..+...
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~d 93 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRD 93 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888889999999999988887777664322 12223334444444444555555555556666666666666
Q ss_pred HHHHHHHhhhcc
Q 013685 104 VSKLEADTSNAN 115 (438)
Q Consensus 104 i~kLe~eI~~~e 115 (438)
|..|.-.=.|+-
T Consensus 94 Ik~LD~AKrNLT 105 (383)
T PF04100_consen 94 IKQLDNAKRNLT 105 (383)
T ss_pred HHHHHHHHHHHH
Confidence 666665544444
No 437
>PRK00295 hypothetical protein; Provisional
Probab=35.35 E-value=2.3e+02 Score=22.62 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..|..|+..+.-.+..+..+..-+.+-...|..|...+..|...+...+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466666666666666666666666666667777766666666665554
No 438
>PRK00736 hypothetical protein; Provisional
Probab=35.34 E-value=2.3e+02 Score=22.62 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
...|..|+..+.-.+..+..+..-+.+-...|..|...+.-|...+....
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777777777777777777777777777777777666655
No 439
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.21 E-value=5.1e+02 Score=26.58 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK-------AIEAYSSI 86 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e-------lee~~~sl 86 (438)
.+....+..|-....+.......+..++..+.+...+.....+.+..++..+.....-|+.-=.+ +.+++..+
T Consensus 18 ~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 18 SSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444444444444444433333333333333 33333333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhhcc
Q 013685 87 ASELERSRTRI-NLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 87 ~~ELee~~~eI-~~LE~ei~kLe~eI~~~e 115 (438)
..+.+..+..+ ......|..|+..++.-.
T Consensus 98 ~~eee~kR~el~~kFq~~L~dIq~~~ee~~ 127 (309)
T PF09728_consen 98 AREEEEKRKELSEKFQATLKDIQAQMEEQS 127 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333333 234445555555444333
No 440
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.15 E-value=2.2e+02 Score=30.39 Aligned_cols=33 Identities=6% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
.+..+...+.++..++..+...+..|+..+...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444454444443
No 441
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.13 E-value=3.9e+02 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 148 LSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 148 ie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
+..++..|-.+-+.|-......+.-+-
T Consensus 68 ~d~~~P~ii~~~~~I~~Y~~~f~syY~ 94 (184)
T PF05791_consen 68 LDTIKPQIIDLNQDIINYNTTFQSYYD 94 (184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555444
No 442
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.03 E-value=2.6e+02 Score=23.17 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 233 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr 233 (438)
.|+..|+.+-+--..+...-.+++..|...-.++.-++..+.++|..-..++...
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666655556666666666677777777777777777666555544433
No 443
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.86 E-value=3.9e+02 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 49 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 49 ~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
......++......+.++.+=+++.....+++.....+..++..+...|+-|...+.+-..+..++.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
Confidence 4445556677777888888888888888888888888888888888888888888888555555544
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.14 E-value=5.8e+02 Score=29.61 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIET 30 (438)
Q Consensus 18 ~ELe~lre~L~~~ 30 (438)
.+|..+|..+..+
T Consensus 151 ~eL~~iR~~~~~~ 163 (782)
T PRK00409 151 EKLRGIRRQLRRK 163 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 445
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=4.9e+02 Score=26.03 Aligned_cols=80 Identities=24% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
..++.+=++ +++....+...+...+.++..++.....-+.........++.++.+...+++.+...+.-+..+......
T Consensus 43 ~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 43 MNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345555555 6777777777777777777777777777777777777777777777777777777666666665554443
Q ss_pred H
Q 013685 110 D 110 (438)
Q Consensus 110 e 110 (438)
=
T Consensus 122 i 122 (246)
T KOG4657|consen 122 I 122 (246)
T ss_pred H
Confidence 3
No 446
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=34.08 E-value=4e+02 Score=27.29 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhH
Q 013685 151 LKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS 230 (438)
Q Consensus 151 lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~ 230 (438)
+..|..+|...+......++++-. ...+.|.+.-............+...+..+...|..|......+....+.+.
T Consensus 12 L~~Ep~~L~~~~~~l~~ql~~La~----~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~ 87 (338)
T PF04124_consen 12 LFSEPQSLSEEIASLDAQLQSLAF----RNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKIS 87 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444 4455555555555555555666667777777777777777777777777766
Q ss_pred HhhHHHHHHh
Q 013685 231 EENEGLHMQL 240 (438)
Q Consensus 231 eEre~L~~ei 240 (438)
+.|.....-+
T Consensus 88 ~~r~~~~~~l 97 (338)
T PF04124_consen 88 EERKKASLLL 97 (338)
T ss_pred HHHHHHHHHH
Confidence 6665544433
No 447
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.02 E-value=75 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=27.2
Q ss_pred cccccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 135 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 135 ~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
.|..=-+.+|...|.-|+.||.+++..|.....-
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999999998866543
No 448
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.93 E-value=3.2e+02 Score=26.60 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH-----------HHhhhhhcHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ-----------IKHQSGLREVELEAELQ 206 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~-----------~K~e~~~ri~Ele~eie 206 (438)
+-|...|++++..|...|..++...... ... --....-++..|++|=. -..............|+
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~-~~~---~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~ 170 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESR-RSD---TDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLD 170 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC---CcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHH
Confidence 3455556666666666666666655542 000 00001234445555422 12233455666777777
Q ss_pred HHHHHHHHHHHhhccHHHHhhhhH
Q 013685 207 KAKSDIEELKANLMDKETELQGIS 230 (438)
Q Consensus 207 ~~~~eLeELka~l~d~E~ELq~L~ 230 (438)
..+..+.-|+.=|..+..||+.|.
T Consensus 171 ~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 171 TIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777664
No 449
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=33.93 E-value=2.8e+02 Score=23.20 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
...+.+|-.+|..+..+|-.|+..+.++-.++..
T Consensus 53 p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 53 PKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777766655543
No 450
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.75 E-value=5.3e+02 Score=26.30 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 62 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
++....++...+.++.++...+..+...|.++..+-.++...|.-+...
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444433333333333333333
No 451
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=33.55 E-value=5.4e+02 Score=26.35 Aligned_cols=26 Identities=4% Similarity=0.096 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 88 SELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
.+++..++.+..++..+..++..+..
T Consensus 158 ~~~~~~~~~l~~~~~~l~~~~~~l~~ 183 (370)
T PRK11578 158 AQIGTIDAQIKRNQASLDTAKTNLDY 183 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555554443
No 452
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=33.41 E-value=4.4e+02 Score=25.27 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 91 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe 91 (438)
+-..+...|.++..+-.-.+..++-||..+.-...++..+....-.+..+--.-...+-+....+..++.+|..+..-=.
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~ 137 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQS 137 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777776666555332222112233344444556666666766666666
Q ss_pred HHHHHHHHHHHHHHH
Q 013685 92 RSRTRINLLEGLVSK 106 (438)
Q Consensus 92 e~~~eI~~LE~ei~k 106 (438)
-....|..||..+.+
T Consensus 138 ~ae~Ki~~LE~KL~e 152 (178)
T PF14073_consen 138 LAETKIKELEEKLQE 152 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665543
No 453
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=32.96 E-value=4.2e+02 Score=24.89 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=55.2
Q ss_pred hHHhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 6 EAAQTKNAESAHLELQSLKG----NLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIE 81 (438)
Q Consensus 6 ~~~~~~~~E~a~~ELe~lre----~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee 81 (438)
.++-...+++.+.+.+.=-. ....-...|+.+-.+..+...+.-...-.+.-...++-.++.+|+.|+..+..+..
T Consensus 14 ~a~~~p~~ess~ee~~ve~~~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~ 93 (157)
T COG3352 14 EATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVS 93 (157)
T ss_pred HHHhcchhhhhhhhHhHHHhhcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555443211 11122344444555555555444443334434444555555555555555555555
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 82 AYSSIASE--------LERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 82 ~~~sl~~E--------Lee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
.|+-+..+ ..+++..+..|.+.|.+|.--.+-.
T Consensus 94 lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 94 LYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 3445556788888888777544433
No 454
>PF14992 TMCO5: TMCO5 family
Probab=32.92 E-value=5.6e+02 Score=26.30 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhcccc
Q 013685 281 SEENEMLKLEISKRELD 297 (438)
Q Consensus 281 ~eEieeLKsEI~~~~~~ 297 (438)
.-++--|..++++|.+.
T Consensus 166 ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 166 EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHhch
Confidence 44555677778777765
No 455
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=32.74 E-value=4.9e+02 Score=25.58 Aligned_cols=202 Identities=23% Similarity=0.261 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE------TLLQLETAKLSVEALRAEGMKAIEAYSSI 86 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE------~~~qLE~ae~~Ie~le~ei~elee~~~sl 86 (438)
+..+..-++.+..-...+...|.++...|.+-..+-......... -..--..+...|..++.-+..+...-..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444444555555555555555555555555544444444433311 01112355666666666667777677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE 166 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE 166 (438)
...++....-|.-|..-...|.+.+-.... .. .......-..+..+=..|..++..-....
T Consensus 104 ~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~-------~~------------~~~~~~~i~~L~~ll~~l~~l~~eR~~~~ 164 (296)
T PF13949_consen 104 RSKLESIEENLELLSGPIEELEASLPSSSP-------SD------------SPQVSEVIRQLRELLNKLEELKKEREELL 164 (296)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHS--B----------S------------SGSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHhhCCCCCc-------cc------------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666666655555554433321 00 11112222233333333333333333333
Q ss_pred HhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHH
Q 013685 167 TKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237 (438)
Q Consensus 167 ~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~ 237 (438)
..+.. .. ....+...+..+.+... .....=+..+|+++...+..+...+..=+.=|+.|...+..+.
T Consensus 165 ~~lk~-~~-~~d~i~~~l~~~~~~~~--~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~ 231 (296)
T PF13949_consen 165 EQLKE-KL-QNDDISKLLSELNKNGS--ADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFA 231 (296)
T ss_dssp HHHHH-------HHHHHHHHHHHSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HH-hhccHHHHHHHhhccCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 11 11233333332222111 2234556777888877777777777766666677666666664
No 456
>COG5570 Uncharacterized small protein [Function unknown]
Probab=32.70 E-value=1.4e+02 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSA 161 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~ 161 (438)
+-.|.+|+++-=.+|.+|+.|+++
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999998864
No 457
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.69 E-value=5.5e+02 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=8.2
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 013685 146 EELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 146 ~Eie~lk~EI~~Les~Ie~a 165 (438)
..|+.-+.|+++.+.+|..+
T Consensus 197 ~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 458
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=32.62 E-value=5.2e+02 Score=25.82 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH---
Q 013685 24 KGNLIETISLMENMKNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYS-----------SI--- 86 (438)
Q Consensus 24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~-----------sl--- 86 (438)
..++......+..++.++...+.+..+...++.. ...+++.++..+...+..+..+...+. .+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 175 (327)
T TIGR02971 96 FKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEE 175 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555556666666666666666666666533 234444444444444433333332221 11
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 87 --ASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 87 --~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..++......+..+...+...+..+....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~~ 206 (327)
T TIGR02971 176 VRETDVDLAQAEVKSALEAVQQAEALLELTY 206 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 12344455666666666666666555443
No 459
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=31.96 E-value=3.9e+02 Score=24.18 Aligned_cols=55 Identities=27% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 62 LETAKLSVEALRAEGMKAIE-AYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee-~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
+......+..++....++.. .+..+..+++.+=-=+..++..+.+....+..+|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 44444444445554444442 33667777777777777788888888888888874
No 460
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.83 E-value=3.2e+02 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=15.3
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
.++.+++.++.....++..|+...+....+|
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555555555555555555444443
No 461
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.83 E-value=1.1e+03 Score=29.32 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 013685 51 AQALARETLLQLETAKLSVEALRAEGM-------KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCS 123 (438)
Q Consensus 51 A~~~~eE~~~qLE~ae~~Ie~le~ei~-------elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~ 123 (438)
.....+++..+|+.=+.--++|..-+. .+.+.|..+...-.++-++=..+-+=|..+.......+.
T Consensus 1077 ~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~------- 1149 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGV------- 1149 (1320)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 344445666666666665555555543 344566666666666666667777777777777666664
Q ss_pred CCCCcchhhhhccccc-chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHH
Q 013685 124 GDYDLGQKIKENQDTM-ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELE 202 (438)
Q Consensus 124 ~~~~~~~~~~~~l~~~-Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele 202 (438)
.-.++ =|+-|-++|+.+|.+-+.-+.-+. +++..++.+++..-|.+... .||-
T Consensus 1150 -----------kg~~~~f~~alaae~s~l~~ereker~~~~-------~enk~l~~qlrdtaeav~aa--------gell 1203 (1320)
T PLN03188 1150 -----------RGAESKFINALAAEISALKVEREKERRYLR-------DENKSLQAQLRDTAEAVQAA--------GELL 1203 (1320)
T ss_pred -----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHhhHHHHHHHH--------HHHH
Confidence 11122 245566666666666554444333 33333344777666655433 5677
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 203 AELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 203 ~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..|++.+..+.--+.+-|+.+-|-..+..+.++|+.+..
T Consensus 1204 vrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1204 VRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888877777777777777776677777777766664
No 462
>PRK04406 hypothetical protein; Provisional
Probab=31.36 E-value=2.9e+02 Score=22.57 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 75 EGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 75 ei~elee~~~sl~~ELee~~~eI~~LE~ei~kL 107 (438)
-|..+-...-.-..+++.+...+..|-..+..+
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333444444444444444333
No 463
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.35 E-value=1.3e+02 Score=32.96 Aligned_cols=42 Identities=12% Similarity=0.343 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
+|+++++.++.+++.+...+.+++.++..+..+|..|+.+++
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555566666666666663
No 464
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.33 E-value=5.1e+02 Score=25.41 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLL 100 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~L 100 (438)
+.+...+...+..+...+..+..+...|......-..+..+|+.|
T Consensus 35 e~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 35 EKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555544
No 465
>PRK10869 recombination and repair protein; Provisional
Probab=30.97 E-value=7.7e+02 Score=27.31 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH
Q 013685 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE 214 (438)
Q Consensus 179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE 214 (438)
++...+-.+.+.+.-+...+.++-.-.++++.+|..
T Consensus 300 ~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 300 ELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 344444444445555554555544444444444433
No 466
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.90 E-value=5.8e+02 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
+.......+..+++++.++|....++|+-|.
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777665
No 467
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.87 E-value=1.8e+02 Score=25.66 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.++-..+..++..|..+-..+.++...++.|.+||-.|+.+-.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888887777665
No 468
>COG5293 Predicted ATPase [General function prediction only]
Probab=30.68 E-value=7.8e+02 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 208 AKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 208 ~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
+.++|.+++..+.....+++++.++|..+-.=++
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk 373 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLK 373 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777777777776665554
No 469
>PRK14011 prefoldin subunit alpha; Provisional
Probab=30.52 E-value=4.3e+02 Score=24.26 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=36.9
Q ss_pred hhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH
Q 013685 132 IKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ 189 (438)
Q Consensus 132 ~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~ 189 (438)
..|.-.++-+.-++++++.+...+..|...|......+++.+. .+...+.++..
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~----~L~~k~~~~~~ 134 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRK----ELEKRAQAIEQ 134 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4444455567777888888888888888888877777777766 44444555533
No 470
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.35 E-value=6.6e+02 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=15.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 145 EEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 145 ~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
...++.++.+|.+.+..+-+.|.-
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhh
Confidence 455666666777777666666643
No 471
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.98 E-value=5e+02 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..-+..+..-|+.++.++..|...+-+..
T Consensus 167 ~~~~~~~s~~~~k~esei~~Ik~lvln~~ 195 (300)
T KOG2629|consen 167 KNTLVQLSRNIEKLESEINTIKQLVLNMS 195 (300)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence 33333444445555555555555444444
No 472
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.95 E-value=3.7e+02 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 55 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~ 55 (438)
+...++.+...+..+...+..+...+.++...+.......
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777777777777777776666665555554
No 473
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.94 E-value=7.9e+02 Score=27.12 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=3.5
Q ss_pred ccccccC
Q 013685 387 CMERSGS 393 (438)
Q Consensus 387 ~~er~gs 393 (438)
..|+|-|
T Consensus 200 ~~e~~~~ 206 (514)
T TIGR03319 200 VAETTVS 206 (514)
T ss_pred hhhheee
Confidence 4455544
No 474
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=29.82 E-value=30 Score=23.97 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=7.3
Q ss_pred cccccCCCC
Q 013685 388 MERSGSIDS 396 (438)
Q Consensus 388 ~er~gs~~~ 396 (438)
.=+|||+|+
T Consensus 14 ~SK~GS~~N 22 (31)
T PF00418_consen 14 QSKCGSLDN 22 (31)
T ss_pred ccccccccc
Confidence 448999997
No 475
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.73 E-value=3.1e+02 Score=22.34 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESK-----ESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~-----~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
+...++.....|..+...+..+...+.... ........| +..+...|......+..+...+......+
T Consensus 10 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-------~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 10 AQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRY-------ISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444434 333333333 34444444444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013685 91 ERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 91 ee~~~eI~~LE~ei~kLe 108 (438)
-....+...++....+-.
T Consensus 83 ~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 83 QEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444443
No 476
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=29.59 E-value=4.8e+02 Score=24.47 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIE--------AYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee--------~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
-.-++..|..+......+...+.+...+.+.....+......|..+.. .|.....=.+.+..++.-++..+.
T Consensus 17 ~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a 96 (158)
T PF09486_consen 17 ERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELA 96 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666665 333333334445555555555555
Q ss_pred HHHHHhhhcc
Q 013685 106 KLEADTSNAN 115 (438)
Q Consensus 106 kLe~eI~~~e 115 (438)
.+...+....
T Consensus 97 ~l~~~l~~~~ 106 (158)
T PF09486_consen 97 ALRQALRAAE 106 (158)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 477
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.57 E-value=2.6e+02 Score=21.48 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013685 68 SVEALRAEGMKAIEAYSSIA 87 (438)
Q Consensus 68 ~Ie~le~ei~elee~~~sl~ 87 (438)
.|..|+..+..+......+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 478
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.56 E-value=88 Score=27.06 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 85 SIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 85 sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.|+.=|+.+...+..|..++..|...+..+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555655555555
No 479
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.54 E-value=1.8e+02 Score=24.36 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.++-.++..+...|..|-.++.....|-..|..+|+-|+..|.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888999999999999999999999999999999998
No 480
>PRK12704 phosphodiesterase; Provisional
Probab=29.53 E-value=8e+02 Score=27.09 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=2.9
Q ss_pred ccccccC
Q 013685 387 CMERSGS 393 (438)
Q Consensus 387 ~~er~gs 393 (438)
..|+|-|
T Consensus 206 ~~e~~~~ 212 (520)
T PRK12704 206 VAETTVS 212 (520)
T ss_pred hhhhcee
Confidence 3344443
No 481
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.17 E-value=2.3e+02 Score=28.58 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=18.9
Q ss_pred HHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 212 IEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 212 LeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
-..+|++..+++-++..|.++|+.|..+-.
T Consensus 85 RDrKKaRm~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 85 RDRKKARMEEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665554
No 482
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.07 E-value=3.2e+02 Score=29.66 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=27.6
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
....|..++..++..|..++..+..++.+++....
T Consensus 69 ~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll 103 (429)
T COG0172 69 DAEELIAEVKELKEKLKELEAALDELEAELDTLLL 103 (429)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888876544
No 483
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.01 E-value=7.9e+02 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
...+..+.+++..++..+...+..|...+.++
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555566666666666666666666665443
No 484
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.96 E-value=3.5e+02 Score=22.74 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 51 AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93 (438)
Q Consensus 51 A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~ 93 (438)
+...+..+......+...++.......+++.....+...|+-.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444445555555555555555555555443
No 485
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=28.50 E-value=6.5e+02 Score=25.70 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHH--HHH------HHHHHHHHHHHHHHHHHH
Q 013685 28 IETISLMENMKNQLRESKESETQAQALARE-TLLQLETAKLSVEALR-AEG--MKA------IEAYSSIASELERSRTRI 97 (438)
Q Consensus 28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE-~~~qLE~ae~~Ie~le-~ei--~el------ee~~~sl~~ELee~~~eI 97 (438)
.+-..+-..+..++..+..-+..+..+... .....+.+...|..+- ..+ ..+ -...-.+..|+..+.+.|
T Consensus 150 ~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qEval~adK~DI~EEl~RL~sHl 229 (291)
T TIGR00255 150 FEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQEAALLAQRIDIAEEIDRLDSHV 229 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344555566666666666666666555422 2222233333333332 111 111 223445556666666666
Q ss_pred HHHHHHHH
Q 013685 98 NLLEGLVS 105 (438)
Q Consensus 98 ~~LE~ei~ 105 (438)
......+.
T Consensus 230 ~~f~~~L~ 237 (291)
T TIGR00255 230 KEFYNILK 237 (291)
T ss_pred HHHHHHHh
Confidence 55555443
No 486
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.41 E-value=9.9e+02 Score=27.76 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013685 24 KGNLIETISLMEN 36 (438)
Q Consensus 24 re~L~~~e~~Iee 36 (438)
..+++++...++.
T Consensus 510 ~~~~~~li~~L~~ 522 (771)
T TIGR01069 510 KEEINVLIEKLSA 522 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 487
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.27 E-value=6.1e+02 Score=25.30 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 94 RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 94 ~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
...|..|+..|.++-..++.++. .-.-++.-.+-.+++.++.+..+++...
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGe------------------eG~VdeA~~~~~~~e~Lk~ek~~le~~~ 172 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGE------------------EGDVDEAQKLMEEVEKLKEEKEELEKEL 172 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566666666666666666664 1123455566777777777777777743
No 488
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.27 E-value=5.2e+02 Score=24.47 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 62 LETAKLSVEALRAEGMKAIEAYSSIASE-----LERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee~~~sl~~E-----Lee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
++-++.....+...+.+++..+..++.+ |=+=+.+|..+-..|.+|+..|..++.
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444443 456677888888888888888887764
No 489
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=27.80 E-value=2.7e+02 Score=30.21 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013685 88 SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAET 167 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ 167 (438)
..+.-++.|+..|+..+..++..+..... +..-++++.++..+...+..|..++..++.
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~---------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 221 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELEL---------------------NPDDPELKSDIEELERHISSLKERIEFLEN 221 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc---------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888887777762 344566777888888888888888888777
Q ss_pred hhhhhhh
Q 013685 168 KLNEGQI 174 (438)
Q Consensus 168 riqEe~~ 174 (438)
-++.+..
T Consensus 222 ~l~~l~~ 228 (475)
T PF10359_consen 222 MLEDLED 228 (475)
T ss_pred HHHHHhh
Confidence 7776655
No 490
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=27.72 E-value=8.7e+02 Score=26.87 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE-------LER 92 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E-------Lee 92 (438)
++.|+.+|.++...=..+--...|..+-....+.-...+...|...+.+-++|.-++.++-..|-.+..+ -+.
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH-HHHHHHHHHHHHHHHhhhh
Q 013685 93 SRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK-SEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 93 ~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk-~EI~~Les~Ie~aE~riqE 171 (438)
+-..--.++.-+++-+.+|..+- .++.+++..- +-++.|...-+.-+-++-.
T Consensus 444 svsqclEmdk~LskKeeeverLQ---------------------------~lkgelEkat~SALdlLkrEKe~~EqefLs 496 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQ---------------------------QLKGELEKATTSALDLLKREKETREQEFLS 496 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 172 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 172 e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
++. +...+..+.-++-.++++.++.|=+.+.
T Consensus 497 lqe------------------EfQk~ekenl~ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 497 LQE------------------EFQKHEKENLEERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHH------------------HHHHHHHhhHHHHHHHHHHHHHHHHhcC
No 491
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.50 E-value=2e+02 Score=28.90 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHH
Q 013685 206 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE 274 (438)
Q Consensus 206 e~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le 274 (438)
.++++..+++.-.+.|+..|-+.|..+|+.|+..-. .|-.+--+++..++.++.+|+.+.
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~---------~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE---------SLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHhhH
Confidence 355666677777777888888888888888887665 444444455555555555554443
No 492
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=27.46 E-value=6.8e+02 Score=25.55 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 013685 25 GNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE------LERSRTRIN 98 (438)
Q Consensus 25 e~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E------Lee~~~eI~ 98 (438)
..|.++...|--+--.+.++...-++......-.+..+...+..|.-.+....++...+..+... |..++.++.
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELv 175 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELV 175 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhc
Q 013685 99 LLEGLVSKLEADTSNA 114 (438)
Q Consensus 99 ~LE~ei~kLe~eI~~~ 114 (438)
++|.+.--.++.|.+.
T Consensus 176 raEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 176 RAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHh
No 493
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.31 E-value=3.7e+02 Score=23.25 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhh----------hhhhhhhhhhHHHHHHHHHHHHH
Q 013685 196 LREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK----------NLMCQRESQLNNDLRKLAQAVED 265 (438)
Q Consensus 196 ~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~----------~~~~~~~~el~~el~~~~~~Ie~ 265 (438)
...++|.-.|.=.+.+.+=|+..+.+++.+-+.|..+-..++..+.. ..++.++..++.+++..+..|+.
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHH
Q ss_pred HHHchhhHHHH
Q 013685 266 LKANLMDKETE 276 (438)
Q Consensus 266 Lka~L~~le~~ 276 (438)
|...++.++.+
T Consensus 81 Ls~kv~eLq~E 91 (96)
T PF11365_consen 81 LSGKVMELQYE 91 (96)
T ss_pred HhhHHHHHhhc
No 494
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=27.11 E-value=70 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhccCCCCcccccccCCCCCC
Q 013685 347 AQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNY 398 (438)
Q Consensus 347 ~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~~g~~g~~~er~gs~~~~~ 398 (438)
|..++..|-.++++ ....+|.+.=..|..-+. +|||++|++-..|
T Consensus 25 S~~~e~~L~~~~~~--~~~~~W~~eN~eai~~~n-----~~ve~~G~~~de~ 69 (72)
T PRK13710 25 SGLVNTAMQNEARR--LRAERWKAENREGMAEVA-----RFIEMNGSFADEN 69 (72)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHhCCcHHhc
No 495
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.96 E-value=3.9e+02 Score=22.65 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHH
Q 013685 202 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS 281 (438)
Q Consensus 202 e~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~ 281 (438)
+..|..++..+...--...-...+-..|++|...|+..+.++-... -...+-..+...+.+++.-- -..+...+.
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevt---r~A~EN~rL~ee~rrl~~f~--~~gerE~l~ 76 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVT---RFAMENIRLREELRRLQSFY--VEGEREMLL 76 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHHHHHHHH--HhhHHHHHH
Q ss_pred HHHHHHHHHH
Q 013685 282 EENEMLKLEI 291 (438)
Q Consensus 282 eEieeLKsEI 291 (438)
.+|..|+.++
T Consensus 77 ~eis~L~~~l 86 (86)
T PF12711_consen 77 QEISELRDQL 86 (86)
T ss_pred HHHHHHHhhC
No 496
>PRK11820 hypothetical protein; Provisional
Probab=26.83 E-value=6.9e+02 Score=25.47 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALA-RETLLQLETAKLSVEALRAEGMK--------AIEAYSSIASELERS 93 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~-eE~~~qLE~ae~~Ie~le~ei~e--------lee~~~sl~~ELee~ 93 (438)
...+..+-..+-..+..++..+..-+..+..+. .-...-.+.+...|..+-..+.. +-...-.+..|+..+
T Consensus 143 ~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~DI~EEi~RL 222 (288)
T PRK11820 143 IEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEVALLAQKADIAEELDRL 222 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcchHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------------HHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHH
Q 013685 94 RTRINLLEGLVSK--------------LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLR 159 (438)
Q Consensus 94 ~~eI~~LE~ei~k--------------Le~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Le 159 (438)
.+.|......+.. ++.+++-+++ -+--.+|+.-.-.+|.+|+++|
T Consensus 223 ~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigS---------------------Ks~~~~is~~vVe~K~elEkiR 281 (288)
T PRK11820 223 KSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGS---------------------KSNDAEITNLVVELKVLIEQMR 281 (288)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHH---------------------ccCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013685 160 SALEIAE 166 (438)
Q Consensus 160 s~Ie~aE 166 (438)
-.+.+.|
T Consensus 282 EQVQNIE 288 (288)
T PRK11820 282 EQVQNIE 288 (288)
T ss_pred HHHhcCC
No 497
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=26.74 E-value=3.9e+02 Score=22.55 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
+..||..+......+...+......+..++.-+.++...+.......-.+....+.+..+...+.--+..-..-+.++..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 013685 96 RINLLEGLVSKLEADT 111 (438)
Q Consensus 96 eI~~LE~ei~kLe~eI 111 (438)
-=..+-..|..++.++
T Consensus 81 ~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHhhccC
No 498
>PRK04325 hypothetical protein; Provisional
Probab=26.73 E-value=3.5e+02 Score=21.97 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 21 QSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALR 73 (438)
Q Consensus 21 e~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le 73 (438)
+.+..+|.+++..|.-...-+.+|.+.+.+-+..++.+..++..+...+.++.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.72 E-value=3.6e+02 Score=22.09 Aligned_cols=70 Identities=29% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 013685 284 NEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM-EEADKSNRRAARMAEQLEAAQSANCEAEA 356 (438)
Q Consensus 284 ieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~-e~~~~~~~~~~~~~e~l~a~~~a~~~~ea 356 (438)
++.+-..++..-...+....++- ..+++.-+.++.|++.|+ ||.|--..-.++..++|++-++-=.+||+
T Consensus 8 ~d~~~~~~~~~~~~~~~~~~e~e---~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 8 FDDLAKQISEALPAAQGPREEIE---KNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=26.68 E-value=4.6e+02 Score=23.30 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 46 ESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 46 ~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++.+..+-.+..+..++..++..+..+.+++....... +....+.++..+...+..+=.+|.+++
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~G 70 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELKAELEELEERLQELEDSL-----EVNGLEAELEELEARLRELIDEIEELG 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHHHHHHcC
Done!