Query 013685
Match_columns 438
No_of_seqs 153 out of 171
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.4 2E-08 6.7E-13 92.7 38.4 83 26-108 7-89 (284)
2 1c1g_A Tropomyosin; contractIl 99.4 4.4E-08 1.5E-12 90.3 39.5 84 25-108 13-96 (284)
3 1i84_S Smooth muscle myosin he 99.1 2.6E-10 8.9E-15 131.0 11.6 105 11-115 857-961 (1184)
4 1i84_S Smooth muscle myosin he 98.9 1.7E-09 5.7E-14 124.3 10.0 97 18-114 857-953 (1184)
5 3na7_A HP0958; flagellar bioge 98.1 0.00051 1.7E-08 66.2 22.3 143 60-241 32-174 (256)
6 3na7_A HP0958; flagellar bioge 98.0 0.00091 3.1E-08 64.4 20.8 161 18-219 11-173 (256)
7 2v71_A Nuclear distribution pr 97.3 0.019 6.3E-07 53.5 18.6 143 138-293 9-155 (189)
8 3vkg_A Dynein heavy chain, cyt 96.7 0.31 1.1E-05 61.5 26.3 205 59-293 1898-2102(3245)
9 2v71_A Nuclear distribution pr 96.4 0.17 5.9E-06 47.0 16.8 59 183-241 96-154 (189)
10 2ocy_A RAB guanine nucleotide 95.8 0.47 1.6E-05 42.7 16.1 76 200-297 76-151 (154)
11 2efr_A General control protein 95.7 1.1 3.9E-05 40.3 18.4 90 151-241 26-115 (155)
12 3oja_B Anopheles plasmodium-re 95.4 0.1 3.4E-06 54.7 12.1 77 206-291 505-581 (597)
13 3oja_B Anopheles plasmodium-re 95.1 0.12 4E-06 54.2 11.6 31 140-170 457-487 (597)
14 3vkg_A Dynein heavy chain, cyt 95.1 6.6 0.00023 49.9 28.2 26 252-277 2075-2100(3245)
15 3ol1_A Vimentin; structural ge 94.4 0.56 1.9E-05 40.2 11.9 85 31-115 19-103 (119)
16 3o0z_A RHO-associated protein 94.0 3.5 0.00012 37.6 22.1 52 141-192 106-157 (168)
17 2dfs_A Myosin-5A; myosin-V, in 93.9 1.1 3.9E-05 51.3 16.6 24 145-168 1022-1045(1080)
18 2v66_B Nuclear distribution pr 93.6 1.3 4.6E-05 37.7 12.6 67 219-294 37-103 (111)
19 2dfs_A Myosin-5A; myosin-V, in 93.6 0.8 2.7E-05 52.5 14.7 22 268-289 1023-1044(1080)
20 2fxo_A Myosin heavy chain, car 93.0 4.1 0.00014 35.1 18.0 23 145-167 103-125 (129)
21 3u59_A Tropomyosin beta chain; 92.6 3.8 0.00013 33.8 15.6 94 22-115 6-99 (101)
22 3u1c_A Tropomyosin alpha-1 cha 92.6 3.9 0.00013 33.9 15.5 89 19-114 10-98 (101)
23 3u1c_A Tropomyosin alpha-1 cha 92.1 4.5 0.00015 33.5 15.5 75 34-108 4-78 (101)
24 3hnw_A Uncharacterized protein 92.1 1.7 5.9E-05 38.2 11.6 58 56-113 78-135 (138)
25 1l8d_A DNA double-strand break 92.0 1.3 4.3E-05 36.8 10.2 32 141-172 66-97 (112)
26 2fxo_A Myosin heavy chain, car 91.8 5.8 0.0002 34.1 17.7 42 14-55 16-57 (129)
27 3ol1_A Vimentin; structural ge 91.7 2.4 8.2E-05 36.2 11.8 87 201-289 18-104 (119)
28 2efr_A General control protein 91.0 8.5 0.00029 34.5 19.3 86 23-115 26-111 (155)
29 3u59_A Tropomyosin beta chain; 90.9 6 0.00021 32.6 14.1 90 19-108 10-99 (101)
30 2v4h_A NF-kappa-B essential mo 90.8 7 0.00024 33.2 13.4 83 19-112 25-107 (110)
31 2e7s_A RAB guanine nucleotide 90.0 2.9 0.0001 36.8 10.9 76 195-292 59-134 (135)
32 3swk_A Vimentin; cytoskeleton, 89.7 5 0.00017 32.4 11.4 80 34-113 2-81 (86)
33 3o0z_A RHO-associated protein 89.6 12 0.00041 34.0 19.4 94 20-113 15-108 (168)
34 3ghg_A Fibrinogen alpha chain; 89.5 5.7 0.0002 42.0 14.3 98 29-126 61-169 (562)
35 2v66_B Nuclear distribution pr 89.0 8.6 0.0003 32.7 12.8 97 141-241 5-101 (111)
36 3hnw_A Uncharacterized protein 88.6 5.1 0.00017 35.2 11.5 96 20-115 30-130 (138)
37 1ic2_A Tropomyosin alpha chain 88.6 5.1 0.00017 31.8 10.5 68 37-104 4-71 (81)
38 3swk_A Vimentin; cytoskeleton, 88.5 1.9 6.4E-05 35.0 8.0 81 206-288 3-83 (86)
39 3tnu_B Keratin, type II cytosk 88.3 6.1 0.00021 33.9 11.7 29 212-240 77-105 (129)
40 2ocy_A RAB guanine nucleotide 88.2 14 0.00048 33.1 16.0 38 181-218 93-130 (154)
41 2zqm_A Prefoldin beta subunit 87.7 5.2 0.00018 33.0 10.6 94 76-174 8-105 (117)
42 3tul_A Cell invasion protein S 87.6 7.3 0.00025 34.8 11.7 105 41-165 22-126 (158)
43 2jee_A YIIU; FTSZ, septum, coi 87.4 3.7 0.00013 33.2 8.9 48 228-284 31-78 (81)
44 1l8d_A DNA double-strand break 87.4 10 0.00034 31.2 12.2 35 14-48 6-40 (112)
45 3tnu_A Keratin, type I cytoske 87.4 6.5 0.00022 33.9 11.3 29 212-240 79-107 (131)
46 3tnu_B Keratin, type II cytosk 87.3 3.2 0.00011 35.7 9.3 45 197-241 23-67 (129)
47 2i1j_A Moesin; FERM, coiled-co 87.0 0.65 2.2E-05 49.7 5.7 135 181-363 327-461 (575)
48 3q8t_A Beclin-1; autophagy, AT 86.8 8.1 0.00028 31.8 11.1 74 204-286 5-85 (96)
49 2b9c_A Striated-muscle alpha t 86.5 4.3 0.00015 36.0 9.9 81 184-294 40-120 (147)
50 2v4h_A NF-kappa-B essential mo 86.5 10 0.00034 32.3 11.5 80 13-96 26-105 (110)
51 3tnu_A Keratin, type I cytoske 86.1 2.8 9.4E-05 36.2 8.2 45 197-241 25-69 (131)
52 2eqb_B RAB guanine nucleotide 83.9 17 0.0006 30.2 13.1 56 61-116 6-61 (97)
53 1wt6_A Myotonin-protein kinase 83.9 3.1 0.00011 33.6 6.8 36 342-379 45-80 (81)
54 1fxk_A Prefoldin; archaeal pro 83.8 8 0.00027 31.4 9.7 79 141-219 10-102 (107)
55 1fxk_A Prefoldin; archaeal pro 82.1 6.3 0.00021 32.1 8.4 92 78-174 5-100 (107)
56 2e7s_A RAB guanine nucleotide 82.1 6.8 0.00023 34.5 8.9 50 181-230 81-130 (135)
57 3jsv_C NF-kappa-B essential mo 81.9 19 0.00064 29.8 10.9 82 34-115 4-88 (94)
58 2lw1_A ABC transporter ATP-bin 81.4 8.8 0.0003 30.8 8.8 63 87-166 21-83 (89)
59 3a7p_A Autophagy protein 16; c 80.7 8.7 0.0003 34.4 9.2 34 254-287 96-129 (152)
60 3qne_A Seryl-tRNA synthetase, 78.4 8.1 0.00028 40.6 9.7 87 39-129 33-119 (485)
61 3bas_A Myosin heavy chain, str 78.4 14 0.00047 29.9 9.1 42 200-241 11-52 (89)
62 2dq0_A Seryl-tRNA synthetase; 78.0 8.1 0.00028 40.1 9.5 87 39-129 31-117 (455)
63 1go4_E MAD1 (mitotic arrest de 78.0 7.9 0.00027 32.4 7.6 81 81-165 12-94 (100)
64 3ghg_A Fibrinogen alpha chain; 77.3 15 0.00052 38.9 11.2 96 144-240 62-161 (562)
65 2yy0_A C-MYC-binding protein; 77.1 3.7 0.00012 30.5 4.8 35 261-295 19-53 (53)
66 3mq9_A Bone marrow stromal ant 76.5 63 0.0021 32.5 15.6 58 55-115 406-463 (471)
67 1m1j_B Fibrinogen beta chain; 76.5 40 0.0014 35.2 14.1 25 33-57 101-125 (464)
68 2b9c_A Striated-muscle alpha t 75.7 42 0.0014 29.6 14.5 27 90-116 96-122 (147)
69 1wle_A Seryl-tRNA synthetase; 74.3 18 0.00061 38.0 11.0 91 39-129 70-164 (501)
70 1ses_A Seryl-tRNA synthetase; 73.3 22 0.00074 36.4 11.1 85 39-129 28-112 (421)
71 1ic2_A Tropomyosin alpha chain 72.6 33 0.0011 27.0 12.0 45 61-105 21-65 (81)
72 2no2_A HIP-I, huntingtin-inter 71.8 43 0.0015 28.0 11.5 90 144-237 13-102 (107)
73 3a7p_A Autophagy protein 16; c 70.1 55 0.0019 29.2 11.5 45 58-102 80-124 (152)
74 3oja_A Leucine-rich immune mol 69.6 55 0.0019 33.2 13.2 34 140-173 443-476 (487)
75 3jsv_C NF-kappa-B essential mo 69.6 46 0.0016 27.5 10.1 81 20-100 4-87 (94)
76 3nmd_A CGMP dependent protein 68.6 14 0.00048 29.2 6.5 46 251-296 23-68 (72)
77 1x79_B RAB GTPase binding effe 68.4 32 0.0011 29.3 9.2 72 144-240 36-107 (112)
78 2zqm_A Prefoldin beta subunit 67.7 49 0.0017 27.0 13.9 34 62-95 72-105 (117)
79 3qne_A Seryl-tRNA synthetase, 66.3 32 0.0011 36.0 10.8 74 74-174 33-106 (485)
80 2xdj_A Uncharacterized protein 66.2 12 0.00041 30.2 5.9 50 140-193 21-70 (83)
81 3mq7_A Bone marrow stromal ant 66.0 64 0.0022 27.7 12.5 40 76-115 73-112 (121)
82 3lss_A Seryl-tRNA synthetase; 65.4 42 0.0014 35.1 11.4 43 87-129 109-152 (484)
83 2dq0_A Seryl-tRNA synthetase; 65.3 32 0.0011 35.6 10.4 74 74-174 31-104 (455)
84 3cvf_A Homer-3, homer protein 63.7 55 0.0019 26.1 9.7 40 13-52 8-47 (79)
85 3nmd_A CGMP dependent protein 63.0 36 0.0012 26.8 7.8 47 69-115 21-67 (72)
86 3oja_A Leucine-rich immune mol 62.6 1.3E+02 0.0046 30.2 15.3 23 270-292 437-459 (487)
87 2no2_A HIP-I, huntingtin-inter 62.5 68 0.0023 26.8 14.6 84 19-105 16-99 (107)
88 3q8t_A Beclin-1; autophagy, AT 62.2 63 0.0022 26.4 14.4 53 60-112 39-91 (96)
89 2i7u_A Four-alpha-helix bundle 61.6 5.3 0.00018 29.5 2.7 21 365-385 12-32 (62)
90 3cvf_A Homer-3, homer protein 61.3 61 0.0021 25.9 9.2 34 19-52 7-40 (79)
91 3qh9_A Liprin-beta-2; coiled-c 61.1 63 0.0022 26.0 9.5 53 58-110 24-76 (81)
92 2eqb_B RAB guanine nucleotide 60.8 71 0.0024 26.5 14.8 54 12-65 6-59 (97)
93 3qh9_A Liprin-beta-2; coiled-c 60.8 64 0.0022 25.9 9.4 54 29-82 23-76 (81)
94 1m1j_B Fibrinogen beta chain; 60.2 1.7E+02 0.0057 30.5 16.5 97 12-110 94-197 (464)
95 3bas_A Myosin heavy chain, str 60.0 65 0.0022 25.8 12.3 11 99-109 74-84 (89)
96 3i00_A HIP-I, huntingtin-inter 58.9 54 0.0019 28.0 9.1 19 147-165 16-34 (120)
97 2lw1_A ABC transporter ATP-bin 58.3 46 0.0016 26.5 8.1 29 144-172 20-48 (89)
98 2dq3_A Seryl-tRNA synthetase; 57.9 8.1 0.00028 39.6 4.3 87 39-129 30-116 (425)
99 1deq_A Fibrinogen (alpha chain 57.4 1.2E+02 0.0042 30.8 12.6 87 28-114 63-160 (390)
100 1m1j_C Fibrinogen gamma chain; 57.3 1.7E+02 0.0059 29.8 14.5 44 66-109 90-133 (409)
101 2i1j_A Moesin; FERM, coiled-co 56.7 11 0.00037 40.2 5.2 11 334-344 418-428 (575)
102 1x8y_A Lamin A/C; structural p 56.2 35 0.0012 27.3 7.0 22 147-168 4-25 (86)
103 3s4r_A Vimentin; alpha-helix, 55.0 84 0.0029 25.5 9.9 32 261-292 56-87 (93)
104 4gkw_A Spindle assembly abnorm 54.4 1.1E+02 0.0038 26.8 21.2 25 147-171 113-137 (167)
105 3iv1_A Tumor susceptibility ge 53.9 83 0.0028 25.1 11.0 57 54-110 19-75 (78)
106 1x8y_A Lamin A/C; structural p 53.5 67 0.0023 25.6 8.3 14 94-107 34-47 (86)
107 3htk_A Structural maintenance 53.3 62 0.0021 23.5 8.5 19 90-108 28-46 (60)
108 1wle_A Seryl-tRNA synthetase; 52.5 85 0.0029 32.9 11.1 81 75-174 71-151 (501)
109 4h22_A Leucine-rich repeat fli 52.3 72 0.0024 26.8 8.4 39 184-222 18-56 (103)
110 3l4q_C Phosphatidylinositol 3- 51.2 1.4E+02 0.0048 27.0 15.4 117 26-165 11-150 (170)
111 2pms_C Pneumococcal surface pr 51.2 86 0.003 27.1 9.0 25 92-116 10-34 (125)
112 2pms_C Pneumococcal surface pr 50.8 1.2E+02 0.0042 26.2 10.4 79 23-116 11-89 (125)
113 4h22_A Leucine-rich repeat fli 49.8 98 0.0034 25.9 8.8 58 58-115 28-85 (103)
114 1ci6_A Transcription factor AT 49.2 24 0.00081 26.7 4.7 26 216-241 22-47 (63)
115 3mq7_A Bone marrow stromal ant 48.2 1.3E+02 0.0045 25.7 14.7 68 38-115 24-91 (121)
116 3c9i_A Tail needle protein GP2 47.4 1.9E+02 0.0063 27.2 11.9 74 42-115 80-153 (242)
117 1gk4_A Vimentin; intermediate 46.5 1.1E+02 0.0036 24.2 9.8 23 147-169 2-24 (84)
118 3m91_A Proteasome-associated A 46.1 40 0.0014 24.8 5.3 37 221-266 13-49 (51)
119 3efg_A Protein SLYX homolog; x 45.4 85 0.0029 24.7 7.5 53 64-116 11-63 (78)
120 1ses_A Seryl-tRNA synthetase; 44.8 80 0.0027 32.2 9.3 36 139-174 64-99 (421)
121 1go4_E MAD1 (mitotic arrest de 43.1 48 0.0016 27.6 6.0 35 261-295 12-46 (100)
122 3hhm_B NISH2 P85alpha; PI3KCA, 42.7 2.7E+02 0.0093 27.9 15.1 55 83-160 200-254 (373)
123 2nrj_A HBL B protein; enteroto 42.4 1.2E+02 0.0041 30.1 9.9 73 37-112 121-193 (346)
124 2dq3_A Seryl-tRNA synthetase; 42.0 74 0.0025 32.4 8.5 71 84-174 33-103 (425)
125 1gd2_E Transcription factor PA 41.7 56 0.0019 25.4 5.8 39 67-105 29-67 (70)
126 2xnx_M M protein, M1-BC1; cell 40.8 1.5E+02 0.0051 26.3 9.1 41 70-110 69-109 (146)
127 2yy0_A C-MYC-binding protein; 40.7 53 0.0018 24.1 5.3 31 82-112 20-50 (53)
128 3lss_A Seryl-tRNA synthetase; 40.5 1.4E+02 0.0047 31.3 10.3 98 74-174 37-139 (484)
129 2zdi_C Prefoldin subunit alpha 40.4 1.3E+02 0.0046 25.8 8.9 36 137-172 96-131 (151)
130 4etp_A Kinesin-like protein KA 39.5 41 0.0014 34.2 6.1 29 364-393 122-152 (403)
131 1ci6_A Transcription factor AT 38.7 1.1E+02 0.0036 23.0 6.9 33 71-103 27-59 (63)
132 1deq_A Fibrinogen (alpha chain 38.4 3.4E+02 0.011 27.7 13.3 65 23-90 54-118 (390)
133 1fxk_C Protein (prefoldin); ar 38.4 1.7E+02 0.0059 24.3 10.9 34 138-171 87-120 (133)
134 4dk0_A Putative MACA; alpha-ha 37.9 99 0.0034 29.7 8.4 40 254-293 115-154 (369)
135 3i00_A HIP-I, huntingtin-inter 37.7 1.9E+02 0.0065 24.6 11.5 29 52-80 39-67 (120)
136 3cve_A Homer protein homolog 1 37.1 1.5E+02 0.0051 23.2 10.8 33 17-49 6-38 (72)
137 3mq9_A Bone marrow stromal ant 36.9 3.3E+02 0.011 27.1 16.1 25 89-113 444-468 (471)
138 2ke4_A CDC42-interacting prote 36.5 1.8E+02 0.006 23.9 8.8 31 138-168 61-91 (98)
139 4dyl_A Tyrosine-protein kinase 36.5 3.3E+02 0.011 27.1 13.5 83 34-116 304-394 (406)
140 1m1j_C Fibrinogen gamma chain; 36.1 3.7E+02 0.013 27.4 14.4 47 70-116 87-133 (409)
141 1jcd_A Major outer membrane li 35.8 1.1E+02 0.0039 22.4 6.3 13 150-162 36-48 (52)
142 3okq_A BUD site selection prot 35.5 2.3E+02 0.0079 24.9 9.5 38 79-116 12-49 (141)
143 4dk0_A Putative MACA; alpha-ha 34.9 2.2E+02 0.0074 27.3 10.3 37 79-115 120-156 (369)
144 1jcd_A Major outer membrane li 34.5 1.3E+02 0.0044 22.1 6.5 32 139-170 4-35 (52)
145 1m1j_A Fibrinogen alpha subuni 34.3 4.2E+02 0.015 27.6 14.5 38 88-125 132-169 (491)
146 2oqq_A Transcription factor HY 33.7 1.1E+02 0.0037 21.7 5.6 34 258-291 7-40 (42)
147 3mov_A Lamin-B1; LMNB1, B-type 33.1 1.3E+02 0.0044 24.5 7.0 31 211-241 38-68 (95)
148 3fpp_A Macrolide-specific effl 32.4 1.1E+02 0.0037 29.2 7.6 22 90-111 130-151 (341)
149 3trt_A Vimentin; cytoskeleton, 32.4 1.6E+02 0.0056 22.3 8.7 38 251-288 39-76 (77)
150 2dgc_A Protein (GCN4); basic d 31.4 82 0.0028 23.7 5.2 36 257-292 26-61 (63)
151 3u06_A Protein claret segregat 31.3 64 0.0022 32.9 6.0 29 364-393 120-150 (412)
152 1lq7_A Alpha3W; three helix bu 30.1 72 0.0025 23.8 4.4 42 96-158 3-44 (67)
153 2xnx_M M protein, M1-BC1; cell 29.9 1.7E+02 0.0059 25.8 7.7 20 339-358 119-138 (146)
154 3m91_A Proteasome-associated A 29.6 1.6E+02 0.0056 21.4 7.1 36 72-107 14-49 (51)
155 4etp_A Kinesin-like protein KA 29.4 1.2E+02 0.0041 30.6 7.7 55 61-115 4-58 (403)
156 2oto_A M protein; helical coil 29.4 2.8E+02 0.0095 24.0 16.7 20 143-162 26-45 (155)
157 3swy_A Cyclic nucleotide-gated 28.3 1.2E+02 0.0041 21.8 5.2 36 259-294 3-38 (46)
158 2zdi_C Prefoldin subunit alpha 28.1 1.2E+02 0.004 26.2 6.4 36 137-172 103-138 (151)
159 3fpp_A Macrolide-specific effl 27.2 98 0.0033 29.5 6.3 16 255-270 115-130 (341)
160 2b5u_A Colicin E3; high resolu 27.1 4.9E+02 0.017 27.5 11.6 73 35-107 303-375 (551)
161 1m1j_A Fibrinogen alpha subuni 26.7 5.7E+02 0.019 26.7 13.1 22 143-164 136-157 (491)
162 4emc_A Monopolin complex subun 26.2 2.4E+02 0.0083 25.9 8.2 28 22-49 10-37 (190)
163 3ghg_B Fibrinogen beta chain; 26.2 5.7E+02 0.02 26.6 13.0 93 16-110 93-192 (461)
164 2bsg_A Fibritin; viral protein 24.7 3.7E+02 0.013 28.2 10.2 158 58-220 92-258 (487)
165 1lq7_A Alpha3W; three helix bu 24.7 76 0.0026 23.7 3.7 42 95-157 25-66 (67)
166 2fqm_A Phosphoprotein, P prote 24.6 31 0.0011 27.0 1.7 14 362-375 30-43 (75)
167 3v86_A De novo design helix; c 24.3 1.1E+02 0.0037 19.2 3.7 22 143-164 4-25 (27)
168 3rrk_A V-type ATPase 116 kDa s 24.2 2.8E+02 0.0097 26.7 9.1 31 202-232 225-255 (357)
169 3zx6_A HAMP, methyl-accepting 24.2 4.9E+02 0.017 25.1 32.9 46 251-296 259-304 (341)
170 3ghg_C Fibrinogen gamma chain; 23.9 5.9E+02 0.02 26.0 15.0 47 58-111 89-135 (411)
171 1gd2_E Transcription factor PA 23.5 2.6E+02 0.0088 21.6 7.6 43 56-98 25-67 (70)
172 1d7m_A Cortexillin I; coiled-c 22.8 3.2E+02 0.011 22.4 12.7 70 171-240 21-90 (101)
173 3s4r_A Vimentin; alpha-helix, 22.6 3E+02 0.01 22.1 12.4 31 20-50 11-41 (93)
174 2yko_A LINE-1 ORF1P; RNA-bindi 22.4 1.7E+02 0.0058 27.8 6.6 49 65-113 4-52 (233)
175 2c5k_T Syntaxin TLG1, T-snare 22.2 2.1E+02 0.0072 23.2 6.4 23 88-110 68-90 (95)
176 4fla_A Regulation of nuclear P 21.4 4.1E+02 0.014 23.3 12.6 73 42-114 71-147 (152)
177 4emc_A Monopolin complex subun 21.3 4.8E+02 0.016 24.0 9.8 52 47-98 14-65 (190)
178 3swf_A CGMP-gated cation chann 21.2 1.2E+02 0.0041 23.9 4.5 36 259-294 5-40 (74)
179 1gmj_A ATPase inhibitor; coile 20.9 3.3E+02 0.011 21.9 8.7 29 87-115 50-78 (84)
180 1wt6_A Myotonin-protein kinase 20.4 3.3E+02 0.011 21.8 7.1 14 224-237 45-58 (81)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.38 E-value=2e-08 Score=92.68 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 26 NLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 26 ~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
++......++.+..++.++...+..+...+..+...+..+...+..+...+..+...+..+..++......+..++..+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHH
Q 013685 106 KLE 108 (438)
Q Consensus 106 kLe 108 (438)
.+.
T Consensus 87 ~~~ 89 (284)
T 1c1g_A 87 SLN 89 (284)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.36 E-value=4.4e-08 Score=90.33 Aligned_cols=84 Identities=7% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 25 GNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLV 104 (438)
Q Consensus 25 e~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei 104 (438)
..++.+...+..+..++..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI 92 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHH
Q 013685 105 SKLE 108 (438)
Q Consensus 105 ~kLe 108 (438)
..+.
T Consensus 93 ~~~~ 96 (284)
T 1c1g_A 93 QLFE 96 (284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.09 E-value=2.6e-10 Score=130.96 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=62.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
+....+..++..++.++..+...+.++..++..+..+...+...+......+..++..+..+...+..+...+..+..++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888888888888888888777777766666666666666777666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 91 ERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 91 ee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+.....+..+...+..++.++..+.
T Consensus 937 ee~ee~l~el~~e~~~le~el~~L~ 961 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKMQQQMLDLE 961 (1184)
T ss_dssp HHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555444
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.93 E-value=1.7e-09 Score=124.28 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 97 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI 97 (438)
.++..+..++..+...+..+...+.++......+......+..++......+..++..+..+...+..+..++..+..++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHhhhc
Q 013685 98 NLLEGLVSKLEADTSNA 114 (438)
Q Consensus 98 ~~LE~ei~kLe~eI~~~ 114 (438)
..++..+..+...+..+
T Consensus 937 ee~ee~l~el~~e~~~l 953 (1184)
T 1i84_S 937 EEEEERSQQLQAEKKKM 953 (1184)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.12 E-value=0.00051 Score=66.21 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccccc
Q 013685 60 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM 139 (438)
Q Consensus 60 ~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~ 139 (438)
.++..++..+..+...+..+...+..+..++...+..|..+...+.+.+..+.+... .-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~---------------------~k 90 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS---------------------ER 90 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------------------HH
Confidence 334444444444444444444444444444444455555555555555555543331 34
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
++..|..+|+.++..|..++..|-.+..++... ..........+..+...+...+. ++.+.+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~---------------~~~l~~~~~~l~~~~~~l~~~~~---~~~~~~ 152 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRK---------------SEKQEDLKKEMLELEKLALELES---LVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 566666666666666666655555444443332 22222333333333333333332 333445
Q ss_pred ccHHHHhhhhHHhhHHHHHHhh
Q 013685 220 MDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.++..++..+..+|..|...|.
T Consensus 153 ~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 153 KNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 5566777777777877777776
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.97 E-value=0.00091 Score=64.43 Aligned_cols=161 Identities=12% Similarity=0.094 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 013685 18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR--T 95 (438)
Q Consensus 18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~--~ 95 (438)
-+|+.+-.+|+++...+..+...+.++...+..+...+..+...+..++..+..++.++......+......|.... .
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k 90 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER 90 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555554432 2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 013685 96 RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQ 175 (438)
Q Consensus 96 eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e 175 (438)
++..|..+|..+...+..++ +++.++..+++.++..+..+...+......+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE-----------------------~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~----- 142 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQAN-----------------------REIENLQNEIKRKSEKQEDLKKEMLELEKLAL----- 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 44444444444444444443 24455555555555555555555444444433
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 176 STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 176 ~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
..+.+....+.++..++..+.....++...+
T Consensus 143 -------------~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 143 -------------ELESLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555556666665555555555443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.32 E-value=0.019 Score=53.52 Aligned_cols=143 Identities=21% Similarity=0.195 Sum_probs=108.4
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka 217 (438)
.+++...+..+...+..+.+++..+..--.--.++. .++...+++++.....+..+...+..++...+..+.....
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE----~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE----AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443222222222 5777788888888888888888888888888888777766
Q ss_pred h----hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 218 N----LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 218 ~----l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
. ...+..+|..++..+..|+..|. ++...-|.+.+..--..+.+.|++.++....+.|.-|.+++..
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ir---------eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVR---------ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 77888899999999999999998 8888888888888888889999999999999999999998874
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.65 E-value=0.31 Score=61.48 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccc
Q 013685 59 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 138 (438)
Q Consensus 59 ~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~ 138 (438)
+.-+..-+.-+...+.++......+..--..|.+....|..+..++...+..+...... -...-
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e----------------a~~~l 1961 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ----------------ANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Confidence 44445555555555555555555555555555555555555555555555555444410 00000
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 218 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~ 218 (438)
.++..=+.+.+..+..+...+..+.....+++..+...+.++..+.=. .=.+++..++++++...+..|.++++.
T Consensus 1962 ~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa-----~Pkr~~l~~ae~~l~~~~~~L~~~~~~ 2036 (3245)
T 3vkg_A 1962 KQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT-----GPLREEVEQLENAANELKLKQDEIVAT 2036 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111223334444444444444444444433333222222211110 223456667777777777888888888
Q ss_pred hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
+.+++..|+.|+++-+.+..+.. .++.+......++++...-+..|..+..+=...+..++.++..
T Consensus 2037 L~~le~~l~~L~~~~~~~~~ek~---------~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2037 ITALEKSIATYKEEYATLIRETE---------QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 88888888777777777776666 7888888888888888888888888888777777788777663
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.39 E-value=0.17 Score=47.01 Aligned_cols=59 Identities=27% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 183 AFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 183 a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+..+...+..+..+|-+++-.-..++...--.-..+.|++..|-..-+.+--|..++.
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555566666666666666655555554
No 10
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.76 E-value=0.47 Score=42.72 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHH
Q 013685 200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN 279 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~ 279 (438)
..+.....+..+|++|-+.|++=- |... ..++.+...+..++..|+.++.+.+..+..
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEA---------N~MV-------------a~ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEA---------NNMV-------------ADARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777776665321 1111 156777888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 013685 280 ISEENEMLKLEISKRELD 297 (438)
Q Consensus 280 L~eEieeLKsEI~~~~~~ 297 (438)
+..++..||.-+.+.+.+
T Consensus 134 lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 134 LTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999998876654
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.69 E-value=1.1 Score=40.25 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhH
Q 013685 151 LKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS 230 (438)
Q Consensus 151 lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~ 230 (438)
+..++.+.+.+++.+++++.++..+.. -.-.-+-.++..-..+.++...++.+|+.+...+.+...+-..-+..++-|.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~-~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELK-TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877766333 1112233344444556667777777777777776666666666666666666
Q ss_pred HhhHHHHHHhh
Q 013685 231 EENEGLHMQLD 241 (438)
Q Consensus 231 eEre~L~~ei~ 241 (438)
...+.|...+.
T Consensus 105 k~id~lEd~L~ 115 (155)
T 2efr_A 105 KSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655555
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.39 E-value=0.1 Score=54.72 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHH
Q 013685 206 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE 285 (438)
Q Consensus 206 e~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEie 285 (438)
..++..+..++.....++.+++.++...+.++.++. .++.++..++..++..+.++..+..+.+.+..++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE---------DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh---------hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555444444444 44444444444444444433333334443334444
Q ss_pred HHHHHH
Q 013685 286 MLKLEI 291 (438)
Q Consensus 286 eLKsEI 291 (438)
.|...+
T Consensus 576 ~l~~~~ 581 (597)
T 3oja_B 576 QLEAKK 581 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 443333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.13 E-value=0.12 Score=54.23 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=14.2
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
++.++..++..++.++.+.+..+......+.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444433
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.09 E-value=6.6 Score=49.93 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685 252 LNNDLRKLAQAVEDLKANLMDKETEL 277 (438)
Q Consensus 252 l~~el~~~~~~Ie~Lka~L~~le~~l 277 (438)
+.+=+..+.++-.+....+..+....
T Consensus 2075 A~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2075 SIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHH
Confidence 33333444444444444444433333
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.38 E-value=0.56 Score=40.21 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 31 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 31 e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
...|.++|.++.++..+.+++...++-+...+++.+...+.--.....++..+..+...++..--.-..|+..|..|..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665555555555555554444444455555555555554444444455555555555
Q ss_pred hhhcc
Q 013685 111 TSNAN 115 (438)
Q Consensus 111 I~~~e 115 (438)
|.=+.
T Consensus 99 l~FLK 103 (119)
T 3ol1_A 99 IAFLK 103 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.03 E-value=3.5 Score=37.58 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH 192 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~ 192 (438)
+..++..+..+..+..+|-.+|-.++.+.....|..+-+++..--.+++-..
T Consensus 106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~ 157 (168)
T 3o0z_A 106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVN 157 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666777777777777777776666555455544444443333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.88 E-value=1.1 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 145 EEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 145 ~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
...+..++.+...|+..+++++..
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.58 E-value=1.3 Score=37.73 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=56.0
Q ss_pred hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
...+..+|..|+..++.|+..|+ +|...-|.+.+.---.-+.|.|++.++....+.+.-|.++|...
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iR---------eLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EK 103 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVR---------ELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEK 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888888999998888 88888888888777888899999999999999999999998743
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.57 E-value=0.8 Score=52.50 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=8.8
Q ss_pred HchhhHHHHHHHHHHHHHHHHH
Q 013685 268 ANLMDKETELQNISEENEMLKL 289 (438)
Q Consensus 268 a~L~~le~~l~~L~eEieeLKs 289 (438)
..+.+++...+.|..++++|..
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.97 E-value=4.1 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=11.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 013685 145 EEELSSLKSEVGQLRSALEIAET 167 (438)
Q Consensus 145 ~~Eie~lk~EI~~Les~Ie~aE~ 167 (438)
...-..+..+|..|+..|++.+.
T Consensus 103 ~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 103 TAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555443
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.60 E-value=3.8 Score=33.84 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE 101 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE 101 (438)
.++..|.-.-...++.-.+...+......+..........+..+...|..++.++..+.+.+......|+.........+
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555666666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhcc
Q 013685 102 GLVSKLEADTSNAN 115 (438)
Q Consensus 102 ~ei~kLe~eI~~~e 115 (438)
.+|..|+..|.-++
T Consensus 86 ~evasLnRriqllE 99 (101)
T 3u59_A 86 AEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777765544
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.56 E-value=3.9 Score=33.91 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
-++.++...+......+.+..++.++.....++ ..++..+...|..++.++..+.+.+......|+.......
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~-------E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQL-------EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444 4444444444445555555555555555555555555556
Q ss_pred HHHHHHHHHHHHhhhc
Q 013685 99 LLEGLVSKLEADTSNA 114 (438)
Q Consensus 99 ~LE~ei~kLe~eI~~~ 114 (438)
..+..+..|+..|.-+
T Consensus 83 ~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 83 KAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.09 E-value=4.5 Score=33.54 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe 108 (438)
++-++.++.-++-+...|...++.+..++..++.....++.++..+...+..+..+|+.....+......+..-+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666555555555555555555555555555555554444444444333
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.05 E-value=1.7 Score=38.22 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
+.+..+++....+|..+..++..+...++.+..++..++.++..|+..+.+|+..+..
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666667777777777777777777777777777777777777665543
No 25
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.98 E-value=1.3 Score=36.82 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=17.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
+..+..++..+...|..|+..+..++.++..+
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554443
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.79 E-value=5.8 Score=34.13 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 55 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~ 55 (438)
.....++..++..+........++......+..+....+..+
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444444444444333
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.65 E-value=2.4 Score=36.22 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHH
Q 013685 201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI 280 (438)
Q Consensus 201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L 280 (438)
++..|..++..|..+...-..+..++..++...+.++.++........ .++.++..++..++.....-.+++..+++|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~--~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE--EAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666666666666666653322221 455666666666666666667777777777
Q ss_pred HHHHHHHHH
Q 013685 281 SEENEMLKL 289 (438)
Q Consensus 281 ~eEieeLKs 289 (438)
..++.=||.
T Consensus 96 ~eEl~FLKk 104 (119)
T 3ol1_A 96 QEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
No 28
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.98 E-value=8.5 Score=34.55 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
+...|.+.+.+++....++.+|..+...+-.-+-. ++..-+.....-..+++.+..+...|.....+....+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER 98 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444433322211 22222222222233344444444444444444444444
Q ss_pred HHHHHHHHhhhcc
Q 013685 103 LVSKLEADTSNAN 115 (438)
Q Consensus 103 ei~kLe~eI~~~e 115 (438)
.|.+|+..|..++
T Consensus 99 sv~kLEk~id~lE 111 (155)
T 2efr_A 99 SVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.86 E-value=6 Score=32.62 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
-++.++...+......+.+..++.++.....++...+..+...+..++..++.....+..+...+...........+.|.
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~eva 89 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666666677777
Q ss_pred HHHHHHHHHH
Q 013685 99 LLEGLVSKLE 108 (438)
Q Consensus 99 ~LE~ei~kLe 108 (438)
+|...|.-|+
T Consensus 90 sLnRriqllE 99 (101)
T 3u59_A 90 SLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7766665443
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.76 E-value=7 Score=33.24 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
+++.|..+|...+..+......+.+++.++.+....+ .+|.-|+..+.=+...+..=+..-+.+.+++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aERadREkl~~eKe 93 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAERHAREKLVEKKE 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccchhhHHHHHhHHH
Confidence 4556666666666666666666666655555422222 14444444444444444444444555555555
Q ss_pred HHHHHHHHHHHHhh
Q 013685 99 LLEGLVSKLEADTS 112 (438)
Q Consensus 99 ~LE~ei~kLe~eI~ 112 (438)
.|...+..|+..+.
T Consensus 94 ~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 94 YLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.04 E-value=2.9 Score=36.79 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=41.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHH
Q 013685 195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE 274 (438)
Q Consensus 195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le 274 (438)
..+-...+.....+..+|++|-+.|++=- |... ..++.+...+..++..|+.++.+.+
T Consensus 59 ~~~R~~aE~~~~~ie~ElE~LTasLFeEA---------N~MV-------------a~ar~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 59 NELRTKAEEEADKLNKEVEDLTASLFDEA---------NNLV-------------ADARMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp TSHHHHHHHTTHHHHHHHHHHHHHHHHHH---------HHHH-------------HHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666677777766665321 1111 1567778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013685 275 TELQNISEENEMLKLEIS 292 (438)
Q Consensus 275 ~~l~~L~eEieeLKsEI~ 292 (438)
..+..+..++..||.-+.
T Consensus 117 ~ll~~lq~QL~~LK~v~~ 134 (135)
T 2e7s_A 117 MLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HCC---------------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 32
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.71 E-value=5 Score=32.42 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
|.++|.|+..+..+.++....++-+...+++.+...+.=-.....++..+..++..++..----..|+..|..|..+|.=
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666555555555555555555555555555555555666665555555555566666666655543
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.56 E-value=12 Score=34.05 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL 99 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~ 99 (438)
|..+...+..--.-..-+|++..++....+.+...+.++...+-.+...-..|+.++..++..+..-+....+....|..
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e 94 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344333334444455555555555555554544444444444444444444444444444444433333333333
Q ss_pred HHHHHHHHHHHhhh
Q 013685 100 LEGLVSKLEADTSN 113 (438)
Q Consensus 100 LE~ei~kLe~eI~~ 113 (438)
|+..|..|..++.+
T Consensus 95 lq~ri~~L~~El~~ 108 (168)
T 3o0z_A 95 LQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.45 E-value=5.7 Score=42.04 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 29 ETISLMENMKNQLRESKESETQAQALARET----------LLQLETAKLSVE-ALRAEGMKAIEAYSSIASELERSRTRI 97 (438)
Q Consensus 29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~----------~~qLE~ae~~Ie-~le~ei~elee~~~sl~~ELee~~~eI 97 (438)
.+...|.+||+++.++.+....+..|+..+ ..+.+....+|- .|+..+.-|.+.+......|..++.-|
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888888442 223333444444 677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCC
Q 013685 98 NLLEGLVSKLEADTSNANRNLSQNCSGDY 126 (438)
Q Consensus 98 ~~LE~ei~kLe~eI~~~e~~~~~~~~~~~ 126 (438)
..+-.+|.+|+-+|.-.-.+--.+|...+
T Consensus 141 edq~~kIQRLEvDIdiqirsCKgsCsr~~ 169 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTBSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 77777777777777655444445666543
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.05 E-value=8.6 Score=32.73 Aligned_cols=97 Identities=25% Similarity=0.207 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM 220 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~ 220 (438)
+..|+.....+..|++.++..+.......+-... .+...+..+...+..+..+|-+|+-.-..++..-----..+.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~----~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS----VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 4567788888888888888888877766555444 666777777788888888888888777777777777778888
Q ss_pred cHHHHhhhhHHhhHHHHHHhh
Q 013685 221 DKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~ 241 (438)
|+++.|-..-+.|--|..++.
T Consensus 81 D~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 81 DFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888888876
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.60 E-value=5.1 Score=35.18 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENM--KNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR 94 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieel--r~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~ 94 (438)
+..+=..++.-...|... -..++.-.-.+-.|+...++ +..+.+.++..++.+..++..+-..+.+...+++.+.
T Consensus 30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444422 44444444444444444444 3344555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 013685 95 TRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 95 ~eI~~LE~ei~kLe~eI~~~e 115 (438)
.++..|..++..|+..+..++
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554443
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.58 E-value=5.1 Score=31.78 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 37 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLV 104 (438)
Q Consensus 37 lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei 104 (438)
++.++..++.+...|...++.+..+++.++.....++.++..+...+..+..+++....++......+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444444444444444444444444443333
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.49 E-value=1.9 Score=35.01 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHH
Q 013685 206 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE 285 (438)
Q Consensus 206 e~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEie 285 (438)
..++..|..+...-..+..++.+++..-+.++.++........ .+..++..++..++.+--.-.+++..+++|..+|.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~--~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE--EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555666666666666666552222221 45555566666666666666666666666666665
Q ss_pred HHH
Q 013685 286 MLK 288 (438)
Q Consensus 286 eLK 288 (438)
=||
T Consensus 81 fLk 83 (86)
T 3swk_A 81 FLK 83 (86)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.33 E-value=6.1 Score=33.91 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=12.7
Q ss_pred HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 212 IEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 212 LeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
+..+...+..++.+|+.++.+-.....++
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444445555444444443333
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.19 E-value=14 Score=33.12 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 218 (438)
Q Consensus 181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~ 218 (438)
-+.|+++..+-+.....-..++.....++..+.+....
T Consensus 93 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 93 ASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666554444444443333333333333333
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=87.66 E-value=5.2 Score=33.00 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----ccCCCCCCCcchhhhhcccccchHHHHHHHHhh
Q 013685 76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL----SQNCSGDYDLGQKIKENQDTMESKHLEEELSSL 151 (438)
Q Consensus 76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~----~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~l 151 (438)
...+...|..+..++..+...+..++..+..+..-+..+..-. .+..-|.|+..+ -.++=++.|...++.+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~-----~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKT-----TKDKAVAELKEKIETL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhc-----cHHHHHHHHHHHHHHH
Confidence 3344556666666777777777777777766666555554210 011113333332 2355678888899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 013685 152 KSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 152 k~EI~~Les~Ie~aE~riqEe~~ 174 (438)
...|..|...+..+..++.+.+.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887766
No 42
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=87.64 E-value=7.3 Score=34.79 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 013685 41 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120 (438)
Q Consensus 41 L~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~ 120 (438)
|+.|...+.-.+.+++--...-+.+-.+-.+.-.+-.++.+.|+.-..-++-....+..+++.+..++..+..+.+
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P---- 97 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDP---- 97 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence 4556666666666665544444445555556666666777778877788888999999999999999999999995
Q ss_pred CCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a 165 (438)
.++++.++...++-++.++.+++..++.+
T Consensus 98 ----------------~~P~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 98 ----------------ADPGYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15678888888888888888888776644
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.43 E-value=3.7 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=25.1
Q ss_pred hhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685 228 GISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN 284 (438)
Q Consensus 228 ~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi 284 (438)
+|+++|..|..+.. +++..+..++...+.|+........++..|...+
T Consensus 31 ELKekN~~L~~e~~---------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 31 ELKEKNNSLSQEVQ---------NAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444 4555555555555555555555555555555443
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.42 E-value=10 Score=31.23 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESE 48 (438)
Q Consensus 14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~ 48 (438)
..+..+++.++..|..+...+..++.++..+...+
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555544444444444444444443
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.39 E-value=6.5 Score=33.88 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=12.6
Q ss_pred HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 212 IEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 212 LeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
+..+...+.+++.+|+.++.+-.....++
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445554444444443333
No 46
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.34 E-value=3.2 Score=35.70 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
........+...+.+|.+++-.+-.++.+|++++..+..|...|.
T Consensus 23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334455667778888888888888999999999999988888887
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.00 E-value=0.65 Score=49.66 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 013685 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA 260 (438)
Q Consensus 181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~ 260 (438)
+.+.+.+++.+.++..+...++.+.+..+.+|.+-...-..++.+++...++.+.|..+-. ++...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~---------~~e~~----- 392 (575)
T 2i1j_A 327 IAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQN---------ELQAM----- 392 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-----
Confidence 4456777777888888888888888888888777777777777777777666665554443 22222
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM 340 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~ 340 (438)
+.+|...-+.-..+...|. .++ .++.+++..+.++..+..+.+.++
T Consensus 393 --~~~l~~~~~~~~~e~~~l~-------~~~-------------------------~~~~~~~~~~~~~~~~~~~e~~~~ 438 (575)
T 2i1j_A 393 --MQRLEETKNMEAAERQKLE-------DEI-------------------------RAKQEEVSRIQQEVELKDSETRRL 438 (575)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHhHHHHHHHHH-------HHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221111222111 111 123344556667777777777888
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhh
Q 013685 341 AEQLEAAQSANCEAEAELRRLKV 363 (438)
Q Consensus 341 ~e~l~a~~~a~~~~eae~~rl~v 363 (438)
.++|..|+.+......+|...-.
T Consensus 439 ~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 439 QEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp ---CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888877777777755444
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.85 E-value=8.1 Score=31.82 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHH-------HHHHHHchhhHHHH
Q 013685 204 ELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQA-------VEDLKANLMDKETE 276 (438)
Q Consensus 204 eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~-------Ie~Lka~L~~le~~ 276 (438)
.++.+...|..++.....+-.+|..|..++..+..+|. .++.+...++.. .+.+..++..+...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~---------~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLE---------KVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777 555555555443 44444444444444
Q ss_pred HHHHHHHHHH
Q 013685 277 LQNISEENEM 286 (438)
Q Consensus 277 l~~L~eEiee 286 (438)
+++|..++.-
T Consensus 76 ~~Sl~~q~~~ 85 (96)
T 3q8t_A 76 LKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 49
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.48 E-value=4.3 Score=36.03 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 013685 184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAV 263 (438)
Q Consensus 184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~I 263 (438)
.--++++-.....++..++.+|+..+...++---. +. ++..++..+..++
T Consensus 40 ~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrK---------------------ye---------E~~RKl~~~E~dL 89 (147)
T 2b9c_A 40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK---------------------YE---------EVARKLVIIESDL 89 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH---------HHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHh---------------------HH---------HHHHHHHHHHHHH
Confidence 33455555566666666666666655444433222 22 4444444444555
Q ss_pred HHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 264 EDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 264 e~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
++...++...+.+...|..++...-.-++..
T Consensus 90 eraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 90 ERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555444444433
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.45 E-value=10 Score=32.29 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELER 92 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee 92 (438)
...+...|....+-|..-...|++++..+..++....+ +.=+..|.+--+..-..=+++.+++..+...+..++..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 34455666666666666667777777766665554432 22233333333333333344444444444444444444
Q ss_pred HHHH
Q 013685 93 SRTR 96 (438)
Q Consensus 93 ~~~e 96 (438)
+..+
T Consensus 102 Lq~q 105 (110)
T 2v4h_A 102 LQRE 105 (110)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.09 E-value=2.8 Score=36.24 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
........+...+.+|.+++-.+-.++.+|++++..+..|...|.
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344455667778888888888888888888888888888888776
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.95 E-value=17 Score=30.17 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.++.++..|..++........++..+..+|..-+..-...+.....|+.+++++.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666677777777777666666677777777777777765
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.93 E-value=3.1 Score=33.57 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHh
Q 013685 342 EQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML 379 (438)
Q Consensus 342 e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l 379 (438)
-+|.-++.-|.+|.+||++|+.+.+..| +++++||-
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~eelq--~~~~~~~~ 80 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMELLQ--AEGATAVT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchhhcc
Confidence 5889999999999999999999999977 56666663
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=83.80 E-value=8 Score=31.38 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=42.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH--------------HHHHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 013685 141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST--------------VKIKSAFEQLEQIKHQSGLREVELEAELQ 206 (438)
Q Consensus 141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~--------------~elr~a~E~le~~K~e~~~ri~Ele~eie 206 (438)
+..+..++..+...+..++..+...+.-+.++..--. .....+...++.++..+...|..++..+.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444443322100 34555666666666666666666666666
Q ss_pred HHHHHHHHHHHhh
Q 013685 207 KAKSDIEELKANL 219 (438)
Q Consensus 207 ~~~~eLeELka~l 219 (438)
.+...+.+++..+
T Consensus 90 ~~~~~l~~lk~~l 102 (107)
T 1fxk_A 90 RVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 55
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.07 E-value=6.3 Score=32.05 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----ccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL----SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~----~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
.+...|..+..++..+...+..++..+..+..-+..+..-. .+..-|+|+...+ .++=.+.|...++.+..
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~-----~~e~~~~L~~~~e~i~~ 79 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVA-----KDELTEELQEKLETLQL 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEEC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhcc-----HHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666665444444210 1111144443322 35567888889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 013685 154 EVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~ 174 (438)
+|..|...+...+.++.+.+.
T Consensus 80 ~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888877665
No 56
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.06 E-value=6.8 Score=34.48 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhH
Q 013685 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS 230 (438)
Q Consensus 181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~ 230 (438)
-+.|+++..+-+.....-..++.....++..+.+....+..+...|+.|+
T Consensus 81 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 81 ASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688887777777666666666666655555555555555555555443
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.92 E-value=19 Score=29.84 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAK---LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae---~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
|+.+..+|..+.+.....+..++++...+...+ .+|.-|...+.=+.+.+..=+..-+.+.+++..|...+..|...
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444333333 56666666666666667666666777777777777777777776
Q ss_pred hhhcc
Q 013685 111 TSNAN 115 (438)
Q Consensus 111 I~~~e 115 (438)
+..+.
T Consensus 84 ~~~L~ 88 (94)
T 3jsv_C 84 FNKLK 88 (94)
T ss_dssp TC---
T ss_pred HHHHH
Confidence 66555
No 58
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.37 E-value=8.8 Score=30.84 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE 166 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE 166 (438)
..+|+.+..+|..|+..|..|+..+..++. |. .....+..|..++..+..++..+..+=+.++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~----y~-------------~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASF----FS-------------QPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTG----GG-------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc----cc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999988772 00 0134566677777777777777766665444
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.69 E-value=8.7 Score=34.43 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH
Q 013685 254 NDLRKLAQAVEDLKANLMDKETELQNISEENEML 287 (438)
Q Consensus 254 ~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL 287 (438)
+-+..+.+++..|..+++.++.++..+..+|..|
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666666666666666665
No 60
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.40 E-value=8.1 Score=40.58 Aligned_cols=87 Identities=5% Similarity=-0.051 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~ 118 (438)
.++-.+...+..++..++.+..+...+.+.|..+...+. ....+..++..+..+|..|+..+..++.++..+-.++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~----~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE----DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666666666666666666666666665544332 2356777888999999999999999999999888889
Q ss_pred ccCCCCCCCcc
Q 013685 119 SQNCSGDYDLG 129 (438)
Q Consensus 119 ~~~~~~~~~~~ 129 (438)
||.++.+|...
T Consensus 109 PN~~~~~vP~g 119 (485)
T 3qne_A 109 GNIVHESVVDS 119 (485)
T ss_dssp CCCCCTTSCCC
T ss_pred CCCCCccCCCC
Confidence 99988877644
No 61
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.38 E-value=14 Score=29.88 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
..+.+|..++.++..++..+...+.....|......|..+..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~ 52 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKN 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555555555555555555554
No 62
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.04 E-value=8.1 Score=40.05 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~ 118 (438)
.++-.+...+..++..++.+..+...+.+.|..+...+ +....+..++..+..+|..++..+..++.++..+--++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG----EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455556666666666666666666666665544333 23456778888999999999999999999999999999
Q ss_pred ccCCCCCCCcc
Q 013685 119 SQNCSGDYDLG 129 (438)
Q Consensus 119 ~~~~~~~~~~~ 129 (438)
||.++.+|...
T Consensus 107 pN~~~~~vP~g 117 (455)
T 2dq0_A 107 PNITHPSVPVG 117 (455)
T ss_dssp CCCCCTTSCCC
T ss_pred CCCCCccCCCC
Confidence 99998887654
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.99 E-value=7.9 Score=32.40 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-CCC-CCCCcchhhhhcccccchHHHHHHHHhhHHHHHHH
Q 013685 81 EAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ-NCS-GDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQL 158 (438)
Q Consensus 81 e~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~-~~~-~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~L 158 (438)
+.|.++..+++.++.+..+|...+..|+..|.+..- -+. +|. ..|+- -.-.....-.......++.++.|+.+|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l-~Gd~~~~~TKVlH---~~~NPa~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL-QGDYDQSRTKVLH---MSLNPTSVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CSCCCTTTEEEEE---ESSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCccCeeee---ecCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777778888888888888888888877431 111 121 11110 000112223345667888888888888
Q ss_pred HHHHHHH
Q 013685 159 RSALEIA 165 (438)
Q Consensus 159 es~Ie~a 165 (438)
+.++...
T Consensus 88 r~~v~~l 94 (100)
T 1go4_E 88 RGLLRAM 94 (100)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 8777543
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.28 E-value=15 Score=38.86 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=50.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh----hhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH----QSGLREVELEAELQKAKSDIEELKANL 219 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~----e~~~ri~Ele~eie~~~~eLeELka~l 219 (438)
|+..|+.||..+.++...--+++.-++.........+.... +.++.+. +++.+|.-|+.+|...-..|.-|+.++
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777766665555555555554443332333333 4444444 334555555555555555555555555
Q ss_pred ccHHHHhhhhHHhhHHHHHHh
Q 013685 220 MDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 220 ~d~E~ELq~L~eEre~L~~ei 240 (438)
.+.-.++|-|--..+.-...+
T Consensus 141 edq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555555555444444433333
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.14 E-value=3.7 Score=30.48 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=28.0
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
.+++.|+..+.+++.+...|..++++|++.+.+|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~e 53 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46777777788888888888888888888888764
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.52 E-value=63 Score=32.54 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 55 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 55 ~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+++...-+-.++..-.+-...+..+++. +..+..+-..+|.+||.+|.+++..|.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444432 233333333466666666666666555544
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.49 E-value=40 Score=35.21 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 33 LMENMKNQLRESKESETQAQALARE 57 (438)
Q Consensus 33 ~Ieelr~qL~dl~~e~~~A~~~~eE 57 (438)
.|.+|++.+..+...-..+..|+..
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~ 125 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNM 125 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444444444333343444333
No 68
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=75.71 E-value=42 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 90 LERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
++...+.|..|+.++.-+...+..+++
T Consensus 96 ae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 96 AELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444444444444443
No 69
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.32 E-value=18 Score=38.04 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK----AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e----lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
.++-.+...+..++..++.+..+...+.+.|..+...+.. ..+....+..++..+..+|..++..+.+++.++..+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666655433310 002556788889999999999999999999999999
Q ss_pred ccccccCCCCCCCcc
Q 013685 115 NRNLSQNCSGDYDLG 129 (438)
Q Consensus 115 e~~~~~~~~~~~~~~ 129 (438)
--++||.++.+|...
T Consensus 150 l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 150 ALRLPNQTHPDVPVG 164 (501)
T ss_dssp HTTSCCCCCTTCCCS
T ss_pred HHhCCCCCCCCCCCC
Confidence 889999998877544
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.33 E-value=22 Score=36.41 Aligned_cols=85 Identities=12% Similarity=0.004 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~ 118 (438)
.++-.+...+..++..++.+..+...+.+.|.. ... +....+..++..+..+|..++..+..++.++..+--++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK--APP----EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555555555555555555555543 111 34567788899999999999999999999999988889
Q ss_pred ccCCCCCCCcc
Q 013685 119 SQNCSGDYDLG 129 (438)
Q Consensus 119 ~~~~~~~~~~~ 129 (438)
||.++.+|...
T Consensus 102 pN~~~~~vp~g 112 (421)
T 1ses_A 102 PLPPWPGAPVG 112 (421)
T ss_dssp CCCCCTTSCSS
T ss_pred CCCCCCCCCCC
Confidence 99988877543
No 71
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.56 E-value=33 Score=26.97 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
+++.+...+...+.....++.++.++.-.+..+..++...+..+.
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 72
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.80 E-value=43 Score=28.00 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=45.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 223 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E 223 (438)
++..+...+..-..+...+..+...+.+...+.....+.....+++.+.++..+-.+ |..++..+......-..+.
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~e----l~~lq~~l~~~~~~~~~l~ 88 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRE----LQVLQGSLETSAQSEANWA 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544433344444555555554443333332 3345555555555555555
Q ss_pred HHhhhhHHhhHHHH
Q 013685 224 TELQGISEENEGLH 237 (438)
Q Consensus 224 ~ELq~L~eEre~L~ 237 (438)
+.|.+|..++..|.
T Consensus 89 ~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 89 AEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.11 E-value=55 Score=29.22 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
+..++..++.+|......+..+.+++..+..++.....++..|+.
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444443333
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.59 E-value=55 Score=33.15 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=20.4
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 173 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~ 173 (438)
++..+.++-..++.+++.+.-.|..+...|++.-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 4555555666666666666666666666665543
No 75
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.59 E-value=46 Score=27.48 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR 96 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e 96 (438)
++.|..+|...+..+-.....++.++..+.+-...++. +..|...-+..-..=+++.+++..+...+...+..+..+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666667777766666777777777766666555533 444444444444444555555555554444444444444
Q ss_pred HHHH
Q 013685 97 INLL 100 (438)
Q Consensus 97 I~~L 100 (438)
+..|
T Consensus 84 ~~~L 87 (94)
T 3jsv_C 84 FNKL 87 (94)
T ss_dssp TC--
T ss_pred HHHH
Confidence 4333
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.58 E-value=14 Score=29.15 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL 296 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~ 296 (438)
+|+..+......|......+..++.+++....+|..|++++.+|.+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666666666666777777777777778888888877754
No 77
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.42 E-value=32 Score=29.28 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 223 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E 223 (438)
++..-+.-+..|..|...+..++.-|.+++- +|.+..+ .....|..|...-..+-
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq--------~fsq~q~-----------------~vq~qL~~Lt~~Re~V~ 90 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQ--------GLSQAKR-----------------DVQEQMAVLMQSREQVS 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 4455566777788888888777777665433 3433322 23334455555555566
Q ss_pred HHhhhhHHhhHHHHHHh
Q 013685 224 TELQGISEENEGLHMQL 240 (438)
Q Consensus 224 ~ELq~L~eEre~L~~ei 240 (438)
.+|..|..+|+.|.-.+
T Consensus 91 ~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 91 EELVRLQKDNDSLQGKH 107 (112)
T ss_dssp TC---------------
T ss_pred HHHHHHHhhccchhhhh
Confidence 66777777777766443
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.74 E-value=49 Score=26.97 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 62 LETAKLSVEALRAEGMKAIEAYSSIASELERSRT 95 (438)
Q Consensus 62 LE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~ 95 (438)
...++..++.+...+..+...+..+..+|.+++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 79
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.27 E-value=32 Score=36.03 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
..+-.+.+.+.++..+++.++++.+.+...|..+... +.+...|..+...++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~---------------------------~~~~~~l~~~~~~l~~ 85 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA---------------------------KEDAKDLIAEKEKLSN 85 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------------TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------------cccHHHHHHHHHHHHH
Confidence 3455566666677777777777777766666555331 2345678888889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 013685 154 EVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~ 174 (438)
+|..|+..+..++.++++...
T Consensus 86 ~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 86 EKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888876544
No 80
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.18 E-value=12 Score=30.18 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.2
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhh
Q 013685 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 193 (438)
Q Consensus 140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e 193 (438)
-..+|...|+.++.||..|++.++...-.++.... ..+..|.+++++...
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~----rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE----RQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 35678889999999999999999999999988877 778889888876653
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.01 E-value=64 Score=27.69 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+.+++.++..+...|....++|.+|......+...|....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 5555555555555555556666666666666666655554
No 82
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=65.42 E-value=42 Score=35.14 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=36.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685 87 ASE-LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG 129 (438)
Q Consensus 87 ~~E-Lee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~ 129 (438)
..+ +..+..+|..++..+..++.++..+-.++||.++.+|...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g 152 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIA 152 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 556 8888999999999999999999988888999988887644
No 83
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=65.28 E-value=32 Score=35.60 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685 74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153 (438)
Q Consensus 74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~ 153 (438)
..+-.+...+.++..+++.++++.+.+...|.++... +.+..+|..+...++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~---------------------------~~~~~~l~~~~~~~~~ 83 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK---------------------------GEPVDELLAKSREIVK 83 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------------------------CCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------------cccHHHHHHHHHHHHH
Confidence 3444555556666666666666666665555543321 3456788899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 013685 154 EVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 154 EI~~Les~Ie~aE~riqEe~~ 174 (438)
+|..|+..+..++.+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988875543
No 84
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.68 E-value=55 Score=26.15 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ 52 (438)
Q Consensus 13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~ 52 (438)
|+++...++.+..+=...+..|..+..++.++..+...+.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERAR 47 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555554444433
No 85
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.96 E-value=36 Score=26.84 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 69 VEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 69 Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
|..|+..+.+..+++......+..+..+|..++.+|..|+..+....
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444455555555555555444443
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.58 E-value=1.3e+02 Score=30.23 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 013685 270 LMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 270 L~~le~~l~~L~eEieeLKsEI~ 292 (438)
......+.+.+.++++.++.++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhh
Confidence 33334455555555555555555
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=62.47 E-value=68 Score=26.79 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
.|.+.+.--.+++..+.+|..++..+. .+......+-..+++.++.+|.....++..+...+..+...=.++...+.
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666 34444445555566666666666665655555555555554444444444
Q ss_pred HHHHHHH
Q 013685 99 LLEGLVS 105 (438)
Q Consensus 99 ~LE~ei~ 105 (438)
.+..+..
T Consensus 93 ~l~~Ek~ 99 (107)
T 2no2_A 93 ELEKERD 99 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.20 E-value=63 Score=26.37 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 60 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 60 ~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
.+|..++.....+...=..+-..|+.....+-....+..+++..+.-....+.
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555555555555555555555544444433
No 89
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=61.62 E-value=5.3 Score=29.54 Aligned_cols=21 Identities=43% Similarity=0.814 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhccCCCC
Q 013685 365 SDQWRKAAEAAASMLSTGNNG 385 (438)
Q Consensus 365 ~~qwrkaae~aaa~l~~g~~g 385 (438)
-+.|.|-|+.||-+|-||+.|
T Consensus 12 feewkklaeeaaklleggggg 32 (62)
T 2i7u_A 12 FEEWKKLAEEAAKLLEGGGGG 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 478999999999999876643
No 90
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.31 E-value=61 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQ 52 (438)
Q Consensus 19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~ 52 (438)
+.+.+-.+|..++..=.+++.++..++......+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333
No 91
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.10 E-value=63 Score=25.97 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
+..++..++-.++.++.+...++-.+.+...+|..+...+...+.+|.-|+..
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444443
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.81 E-value=71 Score=26.48 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETA 65 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~a 65 (438)
.++++-.++..+..++..++..+..+...+.+-...+..|......+..+|+.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444444444444444444444433
No 93
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=60.81 E-value=64 Score=25.93 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 29 ETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEA 82 (438)
Q Consensus 29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~ 82 (438)
.....|-++|-++++++.++.|....+--|..++-.+...++...+++..+.+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555667777777777777777776666655555555555555555554443
No 94
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.17 E-value=1.7e+02 Score=30.54 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 12 NAESAHLELQSLKGNLIETISLMEN-------MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYS 84 (438)
Q Consensus 12 ~~E~a~~ELe~lre~L~~~e~~Iee-------lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~ 84 (438)
+-+.....|+.|+..|+.+.....+ ++..+...+.++......+.+....|+.....|.... .......+.
T Consensus 94 ~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~--~~~~~~~i~ 171 (464)
T 1m1j_B 94 QEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL--DNNIPSSLR 171 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH--hccchhHHH
Confidence 3344555556666666555543333 3344433333333333333333444444443333221 011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 85 SIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 85 sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
.+...++.++..|..|+..+..+...
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666666666666655443
No 95
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.98 E-value=65 Score=25.79 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013685 99 LLEGLVSKLEA 109 (438)
Q Consensus 99 ~LE~ei~kLe~ 109 (438)
.|+..|..++.
T Consensus 74 eLE~~l~el~~ 84 (89)
T 3bas_A 74 HLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 96
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.94 E-value=54 Score=28.02 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=9.3
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 013685 147 ELSSLKSEVGQLRSALEIA 165 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~a 165 (438)
.|+.|+.+|+.|+..|+..
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.34 E-value=46 Score=26.53 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 144 LEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
.+++++.|-..|..|+..|..++..+.+-
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45667777777777777777777776653
No 98
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=57.85 E-value=8.1 Score=39.62 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 013685 39 NQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118 (438)
Q Consensus 39 ~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~ 118 (438)
.++-.+...+..++..++.+..+...+.+.|..+...+ +....+..++..+..+|..++..+..++.++..+--++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG----KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC----SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455555555555555555555555554432222 23456677888899999999999999999999998889
Q ss_pred ccCCCCCCCcc
Q 013685 119 SQNCSGDYDLG 129 (438)
Q Consensus 119 ~~~~~~~~~~~ 129 (438)
||.++.++...
T Consensus 106 pN~~~~~vp~g 116 (425)
T 2dq3_A 106 PNLPHPSVPVG 116 (425)
T ss_dssp CCCCCTTSCCC
T ss_pred CCCCCCCCCCC
Confidence 99988777544
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.38 E-value=1.2e+02 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 28 IETISLMENMKNQLRESKESETQAQALARET-------LLQLETAKLS----VEALRAEGMKAIEAYSSIASELERSRTR 96 (438)
Q Consensus 28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~-------~~qLE~ae~~----Ie~le~ei~elee~~~sl~~ELee~~~e 96 (438)
..+...|+.|++.|.++...=.....|+..+ +.+....... -+.|+..+.-|...+..---.|..++.-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455667777777777766666666665332 2222222222 2233344444444444333355556666
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 013685 97 INLLEGLVSKLEADTSNA 114 (438)
Q Consensus 97 I~~LE~ei~kLe~eI~~~ 114 (438)
|..+-.+|.+|+-+|.-.
T Consensus 143 l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 143 VRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666333
No 100
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.31 E-value=1.7e+02 Score=29.84 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA 109 (438)
Q Consensus 66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~ 109 (438)
..+|..++..+......+..+...+......|..|...|..|..
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444454555555555555555544
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.66 E-value=11 Score=40.22 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH
Q 013685 334 NRRAARMAEQL 344 (438)
Q Consensus 334 ~~~~~~~~e~l 344 (438)
...++|+.+.-
T Consensus 418 ~~~~~~~~~~~ 428 (575)
T 2i1j_A 418 QEEVSRIQQEV 428 (575)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 102
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.20 E-value=35 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=6.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHh
Q 013685 147 ELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~r 168 (438)
+|+++++....|+..|..++.+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~ 25 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDS 25 (86)
T ss_dssp --------CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444454444444444
No 103
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.01 E-value=84 Score=25.49 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
..|..|+..+.++......+..+++.|..++.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555444444
No 104
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=54.41 E-value=1.1e+02 Score=26.80 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=14.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
-.+++-.-|+-|+..|++-.-+.++
T Consensus 113 MVe~LT~TiG~LrKELEdEklK~~E 137 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEKLKAAE 137 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544443
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.87 E-value=83 Score=25.09 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 54 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 54 ~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
.++....+|.+++.+-+.|..=-.++..-+..+..+-..+...|..+.....+|...
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777777777666666666543
No 106
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=53.53 E-value=67 Score=25.60 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 013685 94 RTRINLLEGLVSKL 107 (438)
Q Consensus 94 ~~eI~~LE~ei~kL 107 (438)
...|..++..+..+
T Consensus 34 q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 34 RRLLAEKEREMAEM 47 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 107
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=53.35 E-value=62 Score=23.53 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013685 90 LERSRTRINLLEGLVSKLE 108 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe 108 (438)
+......+..+.+.++.+.
T Consensus 28 ~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 108
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.53 E-value=85 Score=32.90 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHH
Q 013685 75 EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSE 154 (438)
Q Consensus 75 ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~E 154 (438)
.+-.+...+.++..+++.++++.+.+...|.++.+.-...+ ...+.+..+|..+...++.+
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~l~~~ 131 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ-------------------VQQDPQYQSLRARGREIRKQ 131 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-------------------GGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-------------------ccccccHHHHHHHHHHHHHH
Confidence 44555666666666777777777766666665543210000 00123566788888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 013685 155 VGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 155 I~~Les~Ie~aE~riqEe~~ 174 (438)
|..|+..+..++.+++....
T Consensus 132 i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 132 LTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765443
No 109
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=52.32 E-value=72 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccH
Q 013685 184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDK 222 (438)
Q Consensus 184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~ 222 (438)
+-+|+|-|+.+.=.|.-|...|+.++..+..++....++
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776655444444444444444444443333333
No 110
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=51.25 E-value=1.4e+02 Score=27.00 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 013685 26 NLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEA----------------------- 82 (438)
Q Consensus 26 ~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~----------------------- 82 (438)
.++.+--.+-++-.+..+...+-.+.-.....+..++.-.+..|+....-+.=.++.
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E 90 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence 344444555555555555555555555555555555555555555544444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I 162 (438)
+.++..=-+.+..++..+..--..|+.++..... ...+|.+++.+++++|-+|...-
T Consensus 91 ~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~-----------------------~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 91 MQRILLNSERLKSRIAEIHESRTKLEQELRAQAS-----------------------DNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhcCHHHHHHHHHH
Confidence 2233334456666666666666666666655552 45677888888888888887655
Q ss_pred HHH
Q 013685 163 EIA 165 (438)
Q Consensus 163 e~a 165 (438)
+-.
T Consensus 148 D~y 150 (170)
T 3l4q_C 148 DQY 150 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 111
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=51.18 E-value=86 Score=27.12 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 92 RSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 92 e~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.+...|..++..|..++..+.....
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4567888888888888888888774
No 112
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=50.83 E-value=1.2e+02 Score=26.16 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 102 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ 102 (438)
+...+.++.-.|.++...+.++..+- ...|..++.... +.+.++-..+++..+ ..+...|+.|..
T Consensus 11 l~~KvAElekkv~~lek~lk~~~e~d--~e~y~ke~~~~~--~qsele~k~aeLe~l-----------eeL~~ki~eL~~ 75 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEIDESE--SEDYAKEGFRAP--LQSKLDAKKAKLSKL-----------EELSDKIDELDA 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCC--------------CH--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHhHH--HHHHHHHHHHHHHHH-----------HHHHhHHHHHHH
Confidence 34455555556666666555555432 234554432111 223333333333333 457777888888
Q ss_pred HHHHHHHHhhhccc
Q 013685 103 LVSKLEADTSNANR 116 (438)
Q Consensus 103 ei~kLe~eI~~~e~ 116 (438)
.|.+|+.+|.++..
T Consensus 76 kvA~le~e~~~~e~ 89 (125)
T 2pms_C 76 EIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888773
No 113
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.79 E-value=98 Score=25.91 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
+.=+++.++..++.++.....+..++.....+++..+-.+..|...+..|...|..-.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788888888888888888888888888888888888888887776655
No 114
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.23 E-value=24 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 216 KANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 216 ka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
+....+++.+.+.|..+|..|...|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444444
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.18 E-value=1.3e+02 Score=25.75 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 38 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 38 r~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++--.=|..+..+++..+-++..|--+-..++..|...+.+....- ..+|..|+++|..|+..+.+.+
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----------q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----------QKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556666666666677777777777777776665544222 2345555555555554444433
No 116
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=47.35 E-value=1.9e+02 Score=27.23 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 42 RESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 42 ~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.|-+..+.++...+..-..++-.....|-.++.++...+..+..+...+..+.++|...+..|+.|+.+--.+.
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 33444444444444444445555666777777777777777777888888888889999999999998865443
No 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.48 E-value=1.1e+02 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhh
Q 013685 147 ELSSLKSEVGQLRSALEIAETKL 169 (438)
Q Consensus 147 Eie~lk~EI~~Les~Ie~aE~ri 169 (438)
+|+++++-...|+..|.+++.++
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555554
No 118
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.12 E-value=40 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=21.8
Q ss_pred cHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 013685 221 DKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL 266 (438)
Q Consensus 221 d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~L 266 (438)
++...+..|...|..|-.-+. .++.++..+...|+.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Confidence 445556666666666666666 5555555555555543
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=45.43 E-value=85 Score=24.75 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.++..|..|+..+.-.+..+..+..-+.+-...|..|...+.-|...+.....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666666666666667777777777777777777777777776666663
No 120
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.80 E-value=80 Score=32.15 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=27.7
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
.+..+|..+...++.+|..|+..+..++.+++....
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888888875443
No 121
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.11 E-value=48 Score=27.63 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=30.1
Q ss_pred HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685 261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295 (438)
Q Consensus 261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~ 295 (438)
..+..++..+.+|+.+.+.|..+++.|+.+++++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999999999999999999844
No 122
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=42.75 E-value=2.7e+02 Score=27.87 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHH
Q 013685 83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRS 160 (438)
Q Consensus 83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les 160 (438)
+..+..--+.++.+|..+..-..+|+.++.... ..+.+|.++++++|.++-+|+.
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA-----------------------AEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhhccChHHHHHHH
Confidence 344445555666677777777777777666555 3677888999999999987765
No 123
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=42.37 E-value=1.2e+02 Score=30.08 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 37 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 37 lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
++..|.+|...+.+.+.....+...|...+..+..=... +...-..+..-|.-..+.|..|..+|..++.+|.
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~---f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRA---FGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---HHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544321111 2222222333333334445555555555555555
No 124
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.97 E-value=74 Score=32.42 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685 84 SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 163 (438)
Q Consensus 84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie 163 (438)
-.+..+.-.+..++..|..+...+.+.|..+.. .+.+..+|..+...++.+|..|+..+.
T Consensus 33 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (425)
T 2dq3_A 33 LELDKRRREIIKRLEALRSERNKLSKEIGKLKR--------------------EGKDTTEIQNRVKELKEEIDRLEEELR 92 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGS--------------------SCSCTTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------cCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555432 023445566677777777777777777
Q ss_pred HHHHhhhhhhh
Q 013685 164 IAETKLNEGQI 174 (438)
Q Consensus 164 ~aE~riqEe~~ 174 (438)
.++.+++....
T Consensus 93 ~~~~~~~~~~~ 103 (425)
T 2dq3_A 93 KVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777765433
No 125
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.68 E-value=56 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
..|..|+..+..++.....+..+...++..|..|..++.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444555555555555544443
No 126
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=40.85 E-value=1.5e+02 Score=26.26 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e 110 (438)
..+..++.-.......+..++..+++.+..|+.+..+|+.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666666666555543
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.67 E-value=53 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685 82 AYSSIASELERSRTRINLLEGLVSKLEADTS 112 (438)
Q Consensus 82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~ 112 (438)
.+..+..|++.++.++..|...+.++.+.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555443
No 128
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.48 E-value=1.4e+02 Score=31.26 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHH----HHH-H
Q 013685 74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHL----EEE-L 148 (438)
Q Consensus 74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL----~~E-i 148 (438)
..+-.+.+.+..+..+++.++++.+.+...|..+.+.-...+...+. +..+. ...-...+.+.+...| ..+ .
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEI--PPQVK-EAYENGTLKGEQVEQLCVLQLKQLS 113 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--ccccc-ccccccccchhhHHHhhHHHHHHHH
Confidence 34555666777777777777777777777776654411000000000 00000 0000000123344556 666 7
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685 149 SSLKSEVGQLRSALEIAETKLNEGQI 174 (438)
Q Consensus 149 e~lk~EI~~Les~Ie~aE~riqEe~~ 174 (438)
..++.+|..|+..+..++.+++....
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888876544
No 129
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.41 E-value=1.3e+02 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=20.5
Q ss_pred cccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 137 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 137 ~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
.++-+.-|+.+++.+...+..+...+..+...+...
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666555555443
No 130
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.50 E-value=41 Score=34.17 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHhccCCCCcc--cccccC
Q 013685 364 QSDQWRKAAEAAASMLSTGNNGKC--MERSGS 393 (438)
Q Consensus 364 q~~qwrkaae~aaa~l~~g~~g~~--~er~gs 393 (438)
|.+-|...+.---.+|. |.||.+ -.-|||
T Consensus 122 Q~~Vf~~v~~lv~~~l~-G~N~tifAYGqTGS 152 (403)
T 4etp_A 122 NVDVFKEVGQLVQSSLD-GYNVAIFAYGQTGS 152 (403)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEESCTTS
T ss_pred hHHHHHHHHHHHHHHhC-CcceEEEEECCCCC
Confidence 44445443333334443 455542 234555
No 131
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.70 E-value=1.1e+02 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 71 ALRAEGMKAIEAYSSIASELERSRTRINLLEGL 103 (438)
Q Consensus 71 ~le~ei~elee~~~sl~~ELee~~~eI~~LE~e 103 (438)
.+......+......+..++..++.++..|...
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444333
No 132
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.41 E-value=3.4e+02 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL 90 (438)
Q Consensus 23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL 90 (438)
|+.-|+.++ .++++++++|+..+.........+-.-...+...+..........+..|..+..+|
T Consensus 54 Lqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 54 MKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 666666666 67777777777777776666666665555555555555555555555555555444
No 133
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.35 E-value=1.7e+02 Score=24.34 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 171 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE 171 (438)
++-+.-|+++++.+...+..+...+..+...+..
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544444443
No 134
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.88 E-value=99 Score=29.73 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685 254 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 293 (438)
Q Consensus 254 ~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~ 293 (438)
.+++.....+...++++...+..+..+...+..++..+..
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555666666666666666666666665555543
No 135
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.71 E-value=1.9e+02 Score=24.59 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 52 QALARETLLQLETAKLSVEALRAEGMKAI 80 (438)
Q Consensus 52 ~~~~eE~~~qLE~ae~~Ie~le~ei~ele 80 (438)
+.++..+..++-.++.+++.-+....++.
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~ 67 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAA 67 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333
No 136
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.06 E-value=1.5e+02 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 17 HLELQSLKGNLIETISLMENMKNQLRESKESET 49 (438)
Q Consensus 17 ~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~ 49 (438)
...++.+..+=...+..|..+..++.++..+..
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 137
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.87 E-value=3.3e+02 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 89 ELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 89 ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
.+.+++++|..|+..|..+.++|.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555443
No 138
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.55 E-value=1.8e+02 Score=23.89 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685 138 TMESKHLEEELSSLKSEVGQLRSALEIAETK 168 (438)
Q Consensus 138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r 168 (438)
..++.+....|+.++.++-.+..-|..++.+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5577777888888888888888877777654
No 139
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=36.52 E-value=3.3e+02 Score=27.08 Aligned_cols=83 Identities=7% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRA--------EGMKAIEAYSSIASELERSRTRINLLEGLVS 105 (438)
Q Consensus 34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~--------ei~elee~~~sl~~ELee~~~eI~~LE~ei~ 105 (438)
..-++++|..++.++..+...+......++.++..+...+. .+-.....+....-.+..++..-..|...+.
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~ 383 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQE 383 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455555555555555555555555555555555544422 1223444566666777888888889999999
Q ss_pred HHHHHhhhccc
Q 013685 106 KLEADTSNANR 116 (438)
Q Consensus 106 kLe~eI~~~e~ 116 (438)
-|...+..+++
T Consensus 384 ~~~~~~~~~~~ 394 (406)
T 4dyl_A 384 LLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHhcCC
Confidence 99999999996
No 140
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.12 E-value=3.7e+02 Score=27.43 Aligned_cols=47 Identities=4% Similarity=0.049 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
.....++.+++..+......+..++..+..+...|..|...|..+..
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666666666666665555553
No 141
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.85 E-value=1.1e+02 Score=22.43 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHH
Q 013685 150 SLKSEVGQLRSAL 162 (438)
Q Consensus 150 ~lk~EI~~Les~I 162 (438)
..+.|-.+...||
T Consensus 36 ~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 36 AAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444443
No 142
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=35.52 E-value=2.3e+02 Score=24.92 Aligned_cols=38 Identities=5% Similarity=0.171 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685 79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR 116 (438)
Q Consensus 79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~ 116 (438)
+..+...+..+-+.+-++|..|.+.|+.|..++..-+.
T Consensus 12 ~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~Rgv 49 (141)
T 3okq_A 12 MEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRS 49 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 45566778888899999999999999999999988885
No 143
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.95 E-value=2.2e+02 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
.+..+.....++...++.+..++..+..++..+....
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~ 156 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK 156 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 3344444445555555666666666666666655443
No 144
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.52 E-value=1.3e+02 Score=22.10 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=19.9
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLN 170 (438)
Q Consensus 139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq 170 (438)
..+.+|...+..|...|.+|.+.+..+...++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666555554
No 145
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.27 E-value=4.2e+02 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 013685 88 SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGD 125 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~ 125 (438)
.-|..++.-|..+-.+|.+|+.+|.-.-..--.||...
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~ 169 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARS 169 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 44445555555555555555555554443334456544
No 146
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.73 E-value=1.1e+02 Score=21.68 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHH
Q 013685 258 KLAQAVEDLKANLMDKETELQNISEENEMLKLEI 291 (438)
Q Consensus 258 ~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI 291 (438)
.+..++.++......++.++.-|..||..|+.-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3444445555555555666666667777776654
No 147
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.09 E-value=1.3e+02 Score=24.52 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=15.9
Q ss_pred HHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685 211 DIEELKANLMDKETELQGISEENEGLHMQLD 241 (438)
Q Consensus 211 eLeELka~l~d~E~ELq~L~eEre~L~~ei~ 241 (438)
.+..+...+..++.+|+.++.+-.....++.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666655555444443333
No 148
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.42 E-value=1.1e+02 Score=29.15 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013685 90 LERSRTRINLLEGLVSKLEADT 111 (438)
Q Consensus 90 Lee~~~eI~~LE~ei~kLe~eI 111 (438)
+...++.+..++..+..++..+
T Consensus 130 l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444443333
No 149
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.40 E-value=1.6e+02 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 288 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK 288 (438)
++......-...+...+..+..+...++.|..+|+.++
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444445555556666666666666666666554
No 150
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.38 E-value=82 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685 257 RKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292 (438)
Q Consensus 257 ~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~ 292 (438)
......+..|..++..|+.....|..++..|+.+++
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455666666666666666666666666665554
No 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.27 E-value=64 Score=32.89 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHhccCCCCccc--ccccC
Q 013685 364 QSDQWRKAAEAAASMLSTGNNGKCM--ERSGS 393 (438)
Q Consensus 364 q~~qwrkaae~aaa~l~~g~~g~~~--er~gs 393 (438)
|.+-+.-.+.---.+|. |.||.+. .-|||
T Consensus 120 Q~~Vf~~v~plv~~~l~-G~n~tifAYGqTGS 150 (412)
T 3u06_A 120 QSDIFEMVSPLIQSALD-GYNICIFAYGQTGS 150 (412)
T ss_dssp HHHHHTTTHHHHHHHHT-TCCEEEEEESSTTS
T ss_pred HHHHHHHHHHHHHHHHC-CCceEEEEecCCCC
Confidence 44444322222233443 5566422 35555
No 152
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.07 E-value=72 Score=23.81 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHH
Q 013685 96 RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQL 158 (438)
Q Consensus 96 eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~L 158 (438)
++..|++.+..|+..+.-++. +..|.+|+..-++++..|..|
T Consensus 3 rvkaleekvkaleekvkalgg---------------------ggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGG---------------------GGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCC---------------------SSSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhcC---------------------CccHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777774 556666666666655555443
No 153
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=29.90 E-value=1.7e+02 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 013685 339 RMAEQLEAAQSANCEAEAEL 358 (438)
Q Consensus 339 ~~~e~l~a~~~a~~~~eae~ 358 (438)
.+.--|+|+..|+-.+|+.|
T Consensus 119 gLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 119 SLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34446777777777777766
No 154
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.63 E-value=1.6e+02 Score=21.44 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 72 LRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 72 le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kL 107 (438)
+...+..+......+..-|...+.+|..|.+.|.+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444443
No 155
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.44 E-value=1.2e+02 Score=30.64 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
++..++.+|..++....+++..++.+..++.++...+..-+....+|...|..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555555555666666666666666666666666666666666655543
No 156
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=29.38 E-value=2.8e+02 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=9.3
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 013685 143 HLEEELSSLKSEVGQLRSAL 162 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~I 162 (438)
.++.+...|+.+...+...+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~ 45 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVA 45 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555554444333
No 157
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.29 E-value=1.2e+02 Score=21.80 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.0
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
+...|+.+.+.+..+.+++..|..++..-..-++++
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888889999999999988888777766654
No 158
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.12 E-value=1.2e+02 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=17.0
Q ss_pred cccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685 137 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 172 (438)
Q Consensus 137 ~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe 172 (438)
.+..+..|+..+..+...+..++..+......+++.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 159
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.24 E-value=98 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHch
Q 013685 255 DLRKLAQAVEDLKANL 270 (438)
Q Consensus 255 el~~~~~~Ie~Lka~L 270 (438)
+++.....+...++++
T Consensus 115 ~~~~a~~~~~~~~a~l 130 (341)
T 3fpp_A 115 DLDNAATEMAVKQAQI 130 (341)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 160
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.06 E-value=4.9e+02 Score=27.48 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 35 ENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107 (438)
Q Consensus 35 eelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kL 107 (438)
+.-+.|-=+....+..|.+..++...+|..+.+.+...+..+.+.+.-|.+.+.+|+.....|..+...+...
T Consensus 303 e~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 303 ENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
No 161
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.71 E-value=5.7e+02 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 013685 143 HLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
-|+.-|..+..+|.+|+..|..
T Consensus 136 vLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777776653
No 162
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.22 E-value=2.4e+02 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 22 SLKGNLIETISLMENMKNQLRESKESET 49 (438)
Q Consensus 22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~ 49 (438)
.+.+.|+..+.+|..+-.+...|..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554433
No 163
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.15 E-value=5.7e+02 Score=26.56 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE-------TLLQLETAKLSVEALRAEGMKAIEAYSSIAS 88 (438)
Q Consensus 16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE-------~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ 88 (438)
....|+.|+..|+.+...-.++..-+..++......+..... -...|+.....|. +.-+......+.-|..
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~--~~~~~~~~~~i~~l~~ 170 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYID--ETVNSNIPTNLRVLRS 170 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHH--HHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHH--hhhhccchhHHHHHHH
Confidence 344444455444444444444444444455444444444421 1122222222211 1122234445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013685 89 ELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 89 ELee~~~eI~~LE~ei~kLe~e 110 (438)
-++.++..|..|+..|..+...
T Consensus 171 ~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 171 ILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555666666555555544
No 164
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=24.67 E-value=3.7e+02 Score=28.17 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcccccccCCCCCCCcchhhh
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL----VSKLEADTSNANRNLSQNCSGDYDLGQKIK 133 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e----i~kLe~eI~~~e~~~~~~~~~~~~~~~~~~ 133 (438)
...++..-...|..|.....+.......+...++.+...|-...-. -.-+..+|..+..-.++|++-+....
T Consensus 92 vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DING~---- 167 (487)
T 2bsg_A 92 ALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGL---- 167 (487)
T ss_pred HHHHHHhhHHHHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCCCCC----
Confidence 5566666666666666666666666666655555555555432111 11233444444444556666444333
Q ss_pred hcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhc-HHHHHHHHHHHHHHH----hhhhhcHHHHHHHHHHH
Q 013685 134 ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQS-TVKIKSAFEQLEQIK----HQSGLREVELEAELQKA 208 (438)
Q Consensus 134 ~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~-~~elr~a~E~le~~K----~e~~~ri~Ele~eie~~ 208 (438)
+..+..---|+.++...-..|..-..+|-.++..++.-.... +.+......++=..- -..=.|+..++..+-..
T Consensus 168 -p~pgs~~tGmK~rV~~Nt~~i~~~~~RIt~LE~~~~dSDVG~Lt~ev~~LR~ElG~~~~~~~~~IY~RL~~~e~~~~~~ 246 (487)
T 2bsg_A 168 -PVVGNPSSGMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREELGPKPPSFSQNVYSRLNEIDTKQTTV 246 (487)
T ss_pred -cCCCCCCcceehhhhhhHHHHHhcccHHHHHHHhcccCCchHHHHHHHHHHHHhCCCCCCCCccceeehhhhhhhhhhh
Confidence 222555566788888888888888888888888877544321 112222222221111 01234566666666666
Q ss_pred HHHHHHHHHhhc
Q 013685 209 KSDIEELKANLM 220 (438)
Q Consensus 209 ~~eLeELka~l~ 220 (438)
..+|++.+...-
T Consensus 247 ~~~I~~Ik~~IG 258 (487)
T 2bsg_A 247 ESDISAIKTSIG 258 (487)
T ss_pred hhHHHHHHHhhC
Confidence 777776666554
No 165
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.65 E-value=76 Score=23.69 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685 95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 157 (438)
Q Consensus 95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~ 157 (438)
++|..|...-.+|...|+.++. +.+...+..+...+..+|..
T Consensus 25 grieelkkkweelkkkieelgg---------------------ggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 25 GRIEELKKKWEELKKKIEELGG---------------------GGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTS---------------------SSTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC---------------------CcchhHHHHHHHHHHHHHhc
Confidence 3677788888888888998885 66777777777776666643
No 166
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=24.58 E-value=31 Score=27.04 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=11.9
Q ss_pred hhchHHHHHHHHHH
Q 013685 362 KVQSDQWRKAAEAA 375 (438)
Q Consensus 362 ~vq~~qwrkaae~a 375 (438)
.||++||.+--+|-
T Consensus 30 ~~Q~~QW~~TIeav 43 (75)
T 2fqm_A 30 GEQKSQWMLTIKAV 43 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999988864
No 167
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.26 E-value=1.1e+02 Score=19.24 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 013685 143 HLEEELSSLKSEVGQLRSALEI 164 (438)
Q Consensus 143 eL~~Eie~lk~EI~~Les~Ie~ 164 (438)
+|+.+..++++|+..|++..-+
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 5677777778887777765543
No 168
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.23 E-value=2.8e+02 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHhhhhHHh
Q 013685 202 EAELQKAKSDIEELKANLMDKETELQGISEE 232 (438)
Q Consensus 202 e~eie~~~~eLeELka~l~d~E~ELq~L~eE 232 (438)
...|..++..|.++...+..++.+|..+...
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554
No 169
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=24.16 E-value=4.9e+02 Score=25.08 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685 251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL 296 (438)
Q Consensus 251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~ 296 (438)
++...+..+..-.+..-..+.........|......|...+..|..
T Consensus 259 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki 304 (341)
T 3zx6_A 259 QVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 304 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444444444444455555556666666666665543
No 170
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.92 E-value=5.9e+02 Score=25.97 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013685 58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADT 111 (438)
Q Consensus 58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI 111 (438)
++.+....+..|......|..++.. +......|..|...|..|....
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~-------~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEI-------YNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444443 4444445555555555555543
No 171
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.49 E-value=2.6e+02 Score=21.60 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
+.....+..++..|..++.....+..+...+...+..+..++.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444544444455555555555555555444
No 172
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.82 E-value=3.2e+02 Score=22.40 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=41.5
Q ss_pred hhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685 171 EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240 (438)
Q Consensus 171 Ee~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei 240 (438)
++.+....++.+..-.+..-..+...+|.++++.|...=..|+.=+-.-+|+|+-|.---...-.|...+
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkL 90 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKL 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3333333566666666666666777777777777777666666555556666666655444444444333
No 173
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.64 E-value=3e+02 Score=22.10 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 20 LQSLKGNLIETISLMENMKNQLRESKESETQ 50 (438)
Q Consensus 20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~ 50 (438)
++.|-.++......|--+..+-..|...+..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666655565555555555554433
No 174
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.44 E-value=1.7e+02 Score=27.82 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685 65 AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 113 (438)
Q Consensus 65 ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~ 113 (438)
+.+.++.++..++.+++.+..+.........+|..++..+.+|...+..
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444455555555555555555555555666666666666665543
No 175
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.23 E-value=2.1e+02 Score=23.17 Aligned_cols=23 Identities=4% Similarity=0.206 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013685 88 SELERSRTRINLLEGLVSKLEAD 110 (438)
Q Consensus 88 ~ELee~~~eI~~LE~ei~kLe~e 110 (438)
.++...+.-|..+...|..|+..
T Consensus 68 ~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 68 EDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 176
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.44 E-value=4.1e+02 Score=23.26 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013685 42 RESKESETQAQALA----RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 114 (438)
Q Consensus 42 ~dl~~e~~~A~~~~----eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~ 114 (438)
..+...+.+|...+ ..+..++++-+.-+..|+.-.......+......++.-+....++.....+|..-|.++
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444444444444 44667777777777777777777777777777777777777777777777777766655
No 177
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.29 E-value=4.8e+02 Score=23.96 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685 47 SETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN 98 (438)
Q Consensus 47 e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~ 98 (438)
....+...+..+..+...+...++....++..+...+.++...+........
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3334444445555544455555555555555544444444444444443333
No 178
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.20 E-value=1.2e+02 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685 259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 294 (438)
Q Consensus 259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~ 294 (438)
+...|+.|...|..+.+++..|..++..-..-++++
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqR 40 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQR 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888877777766666544
No 179
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.88 E-value=3.3e+02 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.207 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685 87 ASELERSRTRINLLEGLVSKLEADTSNAN 115 (438)
Q Consensus 87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e 115 (438)
..+|+.-..+|..|+..|......|.++.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555554443
No 180
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.42 E-value=3.3e+02 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=5.2
Q ss_pred HHhhhhHHhhHHHH
Q 013685 224 TELQGISEENEGLH 237 (438)
Q Consensus 224 ~ELq~L~eEre~L~ 237 (438)
.+|++....|..|.
T Consensus 45 skL~eae~rn~eL~ 58 (81)
T 1wt6_A 45 SQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
Done!