Query 013689
Match_columns 438
No_of_seqs 217 out of 724
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12498 bZIP_C: Basic leucine 99.9 5.9E-28 1.3E-32 210.7 7.3 114 291-417 1-114 (115)
2 smart00338 BRLZ basic region l 99.3 1.3E-11 2.8E-16 96.9 9.5 62 221-282 2-63 (65)
3 KOG4005 Transcription factor X 99.3 3.7E-11 7.9E-16 116.7 12.0 82 220-301 65-146 (292)
4 PF00170 bZIP_1: bZIP transcri 99.3 3.4E-11 7.5E-16 94.3 9.2 61 222-282 3-63 (64)
5 KOG4343 bZIP transcription fac 99.2 5.5E-11 1.2E-15 125.5 7.9 70 217-286 274-343 (655)
6 KOG3584 cAMP response element 99.0 5.6E-10 1.2E-14 111.0 7.0 59 219-277 286-344 (348)
7 PF07716 bZIP_2: Basic region 99.0 3.6E-09 7.9E-14 80.8 8.7 51 222-273 3-53 (54)
8 KOG0709 CREB/ATF family transc 98.9 1.1E-09 2.4E-14 114.4 7.0 72 221-299 248-319 (472)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.0 1.1E-07 2.4E-12 79.9 -6.0 59 221-279 27-85 (92)
10 KOG0837 Transcriptional activa 97.9 3.7E-05 8E-10 76.2 8.4 50 221-270 202-252 (279)
11 KOG4571 Activating transcripti 97.1 0.0046 9.9E-08 62.5 11.3 64 222-292 224-288 (294)
12 KOG4196 bZIP transcription fac 97.1 0.0042 9.2E-08 56.4 9.8 65 222-300 51-115 (135)
13 KOG3119 Basic region leucine z 96.8 0.0057 1.2E-07 60.8 8.6 46 225-270 195-240 (269)
14 PF06005 DUF904: Protein of un 96.6 0.034 7.3E-07 45.7 10.5 62 245-306 4-65 (72)
15 KOG3863 bZIP transcription fac 96.4 0.0063 1.4E-07 66.6 6.7 66 224-296 490-555 (604)
16 TIGR02449 conserved hypothetic 96.1 0.065 1.4E-06 43.5 9.2 60 247-309 2-61 (65)
17 TIGR02894 DNA_bind_RsfA transc 95.8 0.081 1.7E-06 49.7 9.8 57 253-309 98-154 (161)
18 PRK10884 SH3 domain-containing 95.7 0.12 2.7E-06 49.9 11.2 47 261-307 120-166 (206)
19 PF06156 DUF972: Protein of un 95.5 0.087 1.9E-06 46.2 8.5 53 249-301 5-57 (107)
20 PF02183 HALZ: Homeobox associ 95.4 0.038 8.3E-07 41.6 5.2 42 256-297 2-43 (45)
21 PF07989 Microtub_assoc: Micro 95.3 0.17 3.7E-06 41.8 9.3 61 247-307 2-70 (75)
22 TIGR02449 conserved hypothetic 95.0 0.21 4.5E-06 40.6 8.5 57 245-301 7-63 (65)
23 PRK13169 DNA replication intia 94.8 0.19 4.1E-06 44.5 8.5 51 249-299 5-55 (110)
24 PF06005 DUF904: Protein of un 94.7 0.48 1E-05 39.0 10.3 57 246-302 12-68 (72)
25 PF14197 Cep57_CLD_2: Centroso 94.6 0.35 7.6E-06 39.4 9.0 55 244-298 11-65 (69)
26 COG3074 Uncharacterized protei 94.5 0.28 6E-06 40.8 8.2 53 246-298 19-71 (79)
27 PRK13729 conjugal transfer pil 94.4 0.093 2E-06 56.4 6.9 49 245-293 76-124 (475)
28 PF06156 DUF972: Protein of un 94.4 0.22 4.7E-06 43.8 7.9 50 245-294 8-57 (107)
29 PF07888 CALCOCO1: Calcium bin 94.3 0.84 1.8E-05 50.1 13.8 83 224-306 150-232 (546)
30 PF08614 ATG16: Autophagy prot 94.2 0.34 7.4E-06 45.7 9.6 69 223-291 115-183 (194)
31 PRK13169 DNA replication intia 94.0 0.28 6E-06 43.5 7.9 50 245-294 8-57 (110)
32 PRK11637 AmiB activator; Provi 93.7 1.4 3E-05 46.1 13.8 57 240-296 70-126 (428)
33 PRK10884 SH3 domain-containing 93.7 1.2 2.6E-05 43.2 12.3 53 245-297 118-170 (206)
34 COG4467 Regulator of replicati 93.6 0.35 7.5E-06 43.1 7.7 50 249-298 5-54 (114)
35 PF11559 ADIP: Afadin- and alp 93.6 1.1 2.4E-05 40.4 11.2 62 225-286 46-107 (151)
36 PF04899 MbeD_MobD: MbeD/MobD 93.4 1.2 2.6E-05 36.6 10.1 61 247-307 9-69 (70)
37 PF11559 ADIP: Afadin- and alp 93.3 3 6.5E-05 37.6 13.6 82 226-307 40-121 (151)
38 PF08614 ATG16: Autophagy prot 93.0 2.1 4.6E-05 40.3 12.5 68 245-312 109-176 (194)
39 PRK15422 septal ring assembly 92.5 1.6 3.6E-05 36.8 9.8 38 247-284 6-43 (79)
40 PRK15422 septal ring assembly 92.5 0.95 2.1E-05 38.2 8.3 53 246-298 19-71 (79)
41 PF13851 GAS: Growth-arrest sp 92.0 4.9 0.00011 38.6 13.7 84 222-305 70-168 (201)
42 PRK11637 AmiB activator; Provi 92.0 2.5 5.5E-05 44.2 12.8 74 231-304 54-127 (428)
43 PF12718 Tropomyosin_1: Tropom 91.5 1.9 4.1E-05 39.5 9.8 19 287-305 73-91 (143)
44 COG1579 Zn-ribbon protein, pos 91.0 6.1 0.00013 39.4 13.6 52 223-274 30-81 (239)
45 PF07106 TBPIP: Tat binding pr 90.8 1.8 3.9E-05 39.8 9.2 24 248-271 82-105 (169)
46 COG4026 Uncharacterized protei 90.8 2.6 5.6E-05 42.1 10.6 54 247-300 144-197 (290)
47 TIGR03752 conj_TIGR03752 integ 90.7 1.5 3.2E-05 47.5 9.7 61 246-306 74-135 (472)
48 PF05266 DUF724: Protein of un 90.6 5.6 0.00012 38.2 12.6 59 222-280 87-145 (190)
49 PF13747 DUF4164: Domain of un 90.3 7.6 0.00016 33.0 11.8 71 222-292 9-79 (89)
50 KOG4005 Transcription factor X 90.3 3.9 8.4E-05 41.2 11.4 53 246-298 98-150 (292)
51 PF02403 Seryl_tRNA_N: Seryl-t 90.1 5.5 0.00012 33.8 10.9 77 229-305 7-99 (108)
52 PF09726 Macoilin: Transmembra 90.0 5.2 0.00011 45.3 13.6 39 249-287 542-580 (697)
53 PF09304 Cortex-I_coil: Cortex 89.9 4.9 0.00011 35.7 10.6 57 224-280 16-72 (107)
54 COG3883 Uncharacterized protei 89.8 2.8 6.1E-05 42.4 10.3 63 240-302 33-95 (265)
55 PF10224 DUF2205: Predicted co 89.7 2.3 4.9E-05 35.9 8.1 46 247-292 18-63 (80)
56 COG2433 Uncharacterized conser 89.6 2.7 6E-05 46.8 10.7 84 243-326 434-522 (652)
57 PF10186 Atg14: UV radiation r 89.5 10 0.00023 36.6 13.7 12 286-297 125-136 (302)
58 COG4026 Uncharacterized protei 89.5 2.7 5.8E-05 42.0 9.6 64 243-306 133-196 (290)
59 PF06785 UPF0242: Uncharacteri 89.4 1.9 4.1E-05 45.1 8.8 54 239-292 121-174 (401)
60 PRK09039 hypothetical protein; 89.4 4.5 9.7E-05 41.8 11.7 60 248-307 133-193 (343)
61 PF11932 DUF3450: Protein of u 89.3 8.9 0.00019 37.5 13.1 42 243-284 54-95 (251)
62 PF04849 HAP1_N: HAP1 N-termin 89.1 3.1 6.8E-05 42.9 10.1 60 248-307 244-303 (306)
63 PF02183 HALZ: Homeobox associ 89.0 1.7 3.6E-05 32.9 6.1 39 263-301 2-40 (45)
64 TIGR03495 phage_LysB phage lys 88.8 6.1 0.00013 36.3 10.8 73 246-318 27-99 (135)
65 PF07106 TBPIP: Tat binding pr 88.8 2.4 5.3E-05 38.9 8.4 50 244-293 85-136 (169)
66 PF07888 CALCOCO1: Calcium bin 88.7 35 0.00075 38.0 18.3 24 276-299 434-457 (546)
67 PF12325 TMF_TATA_bd: TATA ele 88.6 5.3 0.00012 35.9 10.1 15 279-293 95-109 (120)
68 PF04880 NUDE_C: NUDE protein, 88.4 0.78 1.7E-05 43.4 4.9 46 247-296 2-47 (166)
69 PF14197 Cep57_CLD_2: Centroso 88.3 3.5 7.5E-05 33.7 8.0 48 258-305 4-51 (69)
70 PF15070 GOLGA2L5: Putative go 88.1 8.4 0.00018 43.1 13.4 56 230-285 107-186 (617)
71 PF14662 CCDC155: Coiled-coil 87.9 3.4 7.4E-05 40.1 9.0 51 249-299 5-55 (193)
72 PF12808 Mto2_bdg: Micro-tubul 87.8 1.3 2.9E-05 34.6 5.1 50 242-294 1-50 (52)
73 PF04102 SlyX: SlyX; InterPro 87.8 2.8 6.1E-05 33.8 7.2 42 245-286 4-45 (69)
74 PF10805 DUF2730: Protein of u 87.8 5.6 0.00012 34.6 9.5 61 243-303 33-95 (106)
75 KOG1853 LIS1-interacting prote 87.4 3.4 7.4E-05 42.0 8.9 10 318-327 188-197 (333)
76 PRK00888 ftsB cell division pr 87.2 2.3 5.1E-05 37.0 6.8 44 261-304 29-72 (105)
77 PF04111 APG6: Autophagy prote 87.1 16 0.00034 37.5 13.8 68 243-310 62-136 (314)
78 PRK04406 hypothetical protein; 87.1 5.3 0.00012 33.1 8.5 46 249-294 8-53 (75)
79 COG4942 Membrane-bound metallo 87.1 12 0.00026 40.2 13.3 72 224-295 38-109 (420)
80 PF10473 CENP-F_leu_zip: Leuci 86.9 23 0.0005 32.8 13.4 42 228-269 35-76 (140)
81 PF08647 BRE1: BRE1 E3 ubiquit 86.8 19 0.00041 30.8 12.2 68 226-293 5-72 (96)
82 TIGR00219 mreC rod shape-deter 86.7 2.4 5.3E-05 42.6 7.6 44 253-299 67-110 (283)
83 PRK02119 hypothetical protein; 86.6 5.5 0.00012 32.7 8.3 44 245-295 9-52 (73)
84 PF15035 Rootletin: Ciliary ro 86.6 6.1 0.00013 37.7 9.8 62 244-305 66-127 (182)
85 KOG1962 B-cell receptor-associ 86.6 5 0.00011 39.6 9.4 59 250-315 149-207 (216)
86 TIGR02894 DNA_bind_RsfA transc 86.4 5.8 0.00013 37.6 9.4 42 251-292 103-144 (161)
87 COG3074 Uncharacterized protei 86.2 10 0.00022 31.8 9.5 53 245-297 4-56 (79)
88 COG4467 Regulator of replicati 86.2 2.9 6.3E-05 37.3 6.9 51 245-295 8-60 (114)
89 PF14662 CCDC155: Coiled-coil 86.2 11 0.00023 36.7 11.3 47 248-294 98-144 (193)
90 PF12329 TMF_DNA_bd: TATA elem 86.2 11 0.00024 31.0 9.9 59 248-306 8-66 (74)
91 PF08317 Spc7: Spc7 kinetochor 86.0 6.4 0.00014 40.1 10.3 59 245-303 209-267 (325)
92 PF12329 TMF_DNA_bd: TATA elem 85.9 11 0.00023 31.1 9.7 64 242-305 9-72 (74)
93 PHA02562 46 endonuclease subun 85.9 14 0.00029 39.4 13.1 39 248-286 361-399 (562)
94 PRK09039 hypothetical protein; 85.6 5.9 0.00013 40.9 10.0 22 270-291 141-162 (343)
95 PF06785 UPF0242: Uncharacteri 85.3 13 0.00028 39.2 12.0 80 223-306 74-167 (401)
96 PF09304 Cortex-I_coil: Cortex 85.2 27 0.00059 31.2 12.9 62 238-299 9-70 (107)
97 PRK04325 hypothetical protein; 85.1 6.2 0.00014 32.5 7.9 24 246-269 10-33 (74)
98 PF12711 Kinesin-relat_1: Kine 84.9 8.6 0.00019 33.0 8.9 42 256-297 21-68 (86)
99 KOG3119 Basic region leucine z 84.8 5.5 0.00012 39.9 9.0 58 245-302 194-251 (269)
100 PRK00846 hypothetical protein; 84.7 7.4 0.00016 32.7 8.3 50 249-298 10-59 (77)
101 PRK05431 seryl-tRNA synthetase 84.6 17 0.00037 38.6 13.0 57 246-302 29-95 (425)
102 PF05266 DUF724: Protein of un 84.5 24 0.00053 33.9 12.8 58 249-306 128-185 (190)
103 PF04156 IncA: IncA protein; 84.4 10 0.00023 35.0 10.1 45 249-293 106-150 (191)
104 PF12777 MT: Microtubule-bindi 84.3 6 0.00013 40.6 9.3 63 246-308 229-291 (344)
105 PF12325 TMF_TATA_bd: TATA ele 84.3 7.8 0.00017 34.8 8.9 7 290-296 99-105 (120)
106 PRK02793 phi X174 lysis protei 84.1 7.5 0.00016 31.8 8.0 25 245-269 8-32 (72)
107 KOG1414 Transcriptional activa 84.0 0.054 1.2E-06 56.6 -5.7 51 219-269 149-203 (395)
108 KOG0982 Centrosomal protein Nu 83.7 12 0.00027 40.4 11.4 58 246-303 298-355 (502)
109 PF10211 Ax_dynein_light: Axon 83.6 20 0.00043 34.2 11.8 41 247-287 122-162 (189)
110 PF15294 Leu_zip: Leucine zipp 83.6 3.8 8.3E-05 41.7 7.3 45 250-294 130-174 (278)
111 PF09755 DUF2046: Uncharacteri 83.5 6.5 0.00014 40.6 9.1 53 248-300 23-75 (310)
112 PF11180 DUF2968: Protein of u 83.3 30 0.00066 33.7 12.9 76 227-302 108-183 (192)
113 PF12718 Tropomyosin_1: Tropom 83.3 12 0.00026 34.3 9.8 66 245-310 14-79 (143)
114 PF10226 DUF2216: Uncharacteri 83.3 23 0.0005 34.5 12.0 94 222-315 21-136 (195)
115 smart00338 BRLZ basic region l 83.0 5 0.00011 31.4 6.4 36 267-302 27-62 (65)
116 PF04102 SlyX: SlyX; InterPro 82.9 7.6 0.00017 31.3 7.5 50 249-298 1-50 (69)
117 smart00340 HALZ homeobox assoc 82.9 2.4 5.2E-05 32.1 4.2 26 269-294 8-33 (44)
118 PRK02119 hypothetical protein; 82.8 7.7 0.00017 31.9 7.6 50 247-303 4-53 (73)
119 KOG4196 bZIP transcription fac 82.8 13 0.00028 34.3 9.7 63 244-307 46-108 (135)
120 PF07407 Seadorna_VP6: Seadorn 82.8 4.8 0.00011 42.2 7.8 25 254-278 34-58 (420)
121 PRK00295 hypothetical protein; 82.5 11 0.00024 30.6 8.3 26 245-270 5-30 (68)
122 PF00170 bZIP_1: bZIP transcri 82.5 6 0.00013 30.9 6.6 35 266-300 26-60 (64)
123 COG4942 Membrane-bound metallo 82.5 18 0.00039 38.9 12.1 72 231-302 38-109 (420)
124 PF06632 XRCC4: DNA double-str 82.1 12 0.00027 39.0 10.5 21 286-306 193-213 (342)
125 PF10481 CENP-F_N: Cenp-F N-te 82.0 26 0.00057 36.0 12.4 87 220-306 14-128 (307)
126 PF05667 DUF812: Protein of un 82.0 11 0.00024 42.0 10.8 61 245-305 328-388 (594)
127 KOG0288 WD40 repeat protein Ti 81.9 25 0.00054 38.0 12.7 28 243-270 46-73 (459)
128 PF09728 Taxilin: Myosin-like 81.6 12 0.00027 38.2 10.2 61 245-305 244-304 (309)
129 PF04977 DivIC: Septum formati 81.5 6.3 0.00014 31.1 6.5 40 263-302 21-60 (80)
130 PRK05431 seryl-tRNA synthetase 81.5 19 0.00041 38.3 11.9 93 232-326 10-113 (425)
131 PF06810 Phage_GP20: Phage min 81.4 10 0.00022 35.2 8.8 15 281-295 52-66 (155)
132 TIGR03752 conj_TIGR03752 integ 81.4 9.1 0.0002 41.7 9.5 30 247-276 68-97 (472)
133 TIGR01843 type_I_hlyD type I s 81.4 23 0.0005 35.8 12.1 19 286-304 245-263 (423)
134 KOG0250 DNA repair protein RAD 81.4 20 0.00044 42.5 12.8 67 234-300 368-435 (1074)
135 PF07412 Geminin: Geminin; In 81.3 5.4 0.00012 38.9 7.2 51 255-309 121-171 (200)
136 PF09738 DUF2051: Double stran 81.3 28 0.00061 35.9 12.6 86 217-303 85-170 (302)
137 PF04111 APG6: Autophagy prote 81.1 24 0.00052 36.1 12.1 56 243-298 76-131 (314)
138 PRK13922 rod shape-determining 81.1 6.7 0.00015 38.5 7.9 9 259-267 76-84 (276)
139 PF08826 DMPK_coil: DMPK coile 81.0 12 0.00026 30.1 7.9 39 252-297 18-56 (61)
140 PF05837 CENP-H: Centromere pr 80.9 15 0.00033 31.9 9.1 64 245-309 17-80 (106)
141 KOG0288 WD40 repeat protein Ti 80.9 6.2 0.00013 42.4 8.0 71 246-316 28-103 (459)
142 KOG0977 Nuclear envelope prote 80.8 17 0.00036 40.4 11.4 64 234-297 130-193 (546)
143 KOG4403 Cell surface glycoprot 80.7 16 0.00034 39.8 10.8 75 224-302 242-324 (575)
144 PHA03162 hypothetical protein; 80.5 4.9 0.00011 37.0 6.1 29 241-269 9-37 (135)
145 KOG2391 Vacuolar sorting prote 80.5 12 0.00025 39.5 9.6 59 244-302 224-282 (365)
146 KOG1962 B-cell receptor-associ 80.5 5.6 0.00012 39.2 7.0 39 252-290 172-210 (216)
147 PF10211 Ax_dynein_light: Axon 80.3 23 0.00051 33.7 11.0 52 244-295 126-178 (189)
148 PF14915 CCDC144C: CCDC144C pr 80.3 20 0.00043 37.1 11.0 74 233-306 181-254 (305)
149 PF09726 Macoilin: Transmembra 80.2 25 0.00053 40.1 12.8 10 36-46 191-200 (697)
150 COG1579 Zn-ribbon protein, pos 80.2 28 0.00061 34.9 11.8 61 243-303 87-147 (239)
151 KOG2077 JNK/SAPK-associated pr 80.0 6.4 0.00014 44.0 7.9 52 248-299 325-376 (832)
152 PRK10803 tol-pal system protei 79.9 10 0.00022 37.7 8.8 47 246-292 55-101 (263)
153 PRK13922 rod shape-determining 79.9 20 0.00043 35.3 10.7 27 273-299 69-95 (276)
154 PF11577 NEMO: NF-kappa-B esse 79.8 23 0.0005 29.1 9.2 61 249-309 3-67 (68)
155 PRK02793 phi X174 lysis protei 79.8 12 0.00025 30.7 7.6 49 248-296 4-52 (72)
156 PF05278 PEARLI-4: Arabidopsis 79.5 33 0.00072 35.0 12.2 41 245-285 207-247 (269)
157 PF10174 Cast: RIM-binding pro 79.5 11 0.00024 43.3 9.9 64 241-304 297-360 (775)
158 PRK00295 hypothetical protein; 79.5 14 0.00031 29.9 8.0 47 250-296 3-49 (68)
159 COG2433 Uncharacterized conser 79.5 14 0.0003 41.5 10.3 67 245-311 443-512 (652)
160 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.3 26 0.00056 31.3 10.4 64 252-315 59-126 (132)
161 PF10146 zf-C4H2: Zinc finger- 79.3 45 0.00097 33.1 12.9 67 240-306 27-100 (230)
162 PF10805 DUF2730: Protein of u 79.2 22 0.00048 30.9 9.7 55 245-299 42-98 (106)
163 KOG2264 Exostosin EXT1L [Signa 79.2 15 0.00031 41.4 10.3 56 245-300 93-148 (907)
164 PF00038 Filament: Intermediat 79.0 54 0.0012 32.5 13.6 45 254-298 211-255 (312)
165 PF00261 Tropomyosin: Tropomyo 79.0 66 0.0014 31.3 14.3 57 247-303 171-227 (237)
166 PF04642 DUF601: Protein of un 79.0 2.6 5.5E-05 42.7 4.2 60 245-304 217-276 (311)
167 PF03962 Mnd1: Mnd1 family; I 78.9 15 0.00034 34.9 9.3 69 239-307 77-155 (188)
168 KOG1414 Transcriptional activa 78.6 0.94 2E-05 47.5 1.2 43 223-265 284-326 (395)
169 PHA03155 hypothetical protein; 78.5 14 0.0003 33.4 8.2 26 245-270 8-33 (115)
170 TIGR00414 serS seryl-tRNA synt 78.5 37 0.00081 36.0 12.9 45 284-328 73-118 (418)
171 TIGR02231 conserved hypothetic 78.5 38 0.00083 36.5 13.2 47 262-308 127-173 (525)
172 COG3883 Uncharacterized protei 78.3 18 0.00038 36.8 9.9 53 248-300 48-100 (265)
173 KOG4571 Activating transcripti 78.2 14 0.0003 38.1 9.2 39 265-303 247-285 (294)
174 PRK00736 hypothetical protein; 78.1 15 0.00032 29.8 7.7 26 245-270 5-30 (68)
175 PF13094 CENP-Q: CENP-Q, a CEN 78.0 24 0.00052 32.2 10.0 68 249-316 24-92 (160)
176 PF10205 KLRAQ: Predicted coil 77.9 15 0.00033 32.5 8.2 49 254-302 21-69 (102)
177 PLN02678 seryl-tRNA synthetase 77.9 45 0.00098 36.1 13.4 83 246-328 34-120 (448)
178 PF08172 CASP_C: CASP C termin 77.7 11 0.00024 37.6 8.3 15 115-129 18-32 (248)
179 PRK04325 hypothetical protein; 77.7 15 0.00032 30.3 7.6 50 246-295 3-52 (74)
180 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.4 39 0.00085 30.1 10.9 6 248-253 31-36 (132)
181 PF00769 ERM: Ezrin/radixin/mo 77.3 43 0.00093 33.2 12.2 47 255-301 71-117 (246)
182 TIGR02209 ftsL_broad cell divi 77.2 13 0.00028 30.1 7.2 36 259-294 24-59 (85)
183 PF09789 DUF2353: Uncharacteri 77.0 23 0.00049 36.9 10.5 46 248-293 68-113 (319)
184 PLN02320 seryl-tRNA synthetase 76.8 41 0.00088 37.1 12.8 84 245-328 93-179 (502)
185 COG2919 Septum formation initi 76.8 51 0.0011 29.1 11.3 50 259-308 50-99 (117)
186 KOG4797 Transcriptional regula 76.8 7.4 0.00016 35.0 6.0 31 257-287 65-95 (123)
187 PRK00736 hypothetical protein; 76.8 17 0.00037 29.4 7.7 47 249-295 2-48 (68)
188 KOG0977 Nuclear envelope prote 76.5 32 0.0007 38.2 12.0 41 261-301 150-190 (546)
189 PRK04406 hypothetical protein; 76.4 16 0.00035 30.3 7.5 46 246-291 12-57 (75)
190 PF00769 ERM: Ezrin/radixin/mo 76.4 23 0.0005 35.1 10.0 81 225-305 13-100 (246)
191 PF10506 MCC-bdg_PDZ: PDZ doma 76.1 21 0.00046 29.2 8.0 54 249-302 2-55 (67)
192 KOG4643 Uncharacterized coiled 76.0 37 0.0008 40.4 12.7 81 220-300 369-449 (1195)
193 PF09789 DUF2353: Uncharacteri 75.9 14 0.00031 38.3 8.7 36 238-273 76-114 (319)
194 PF01166 TSC22: TSC-22/dip/bun 75.9 3.5 7.5E-05 33.1 3.4 28 260-287 15-42 (59)
195 COG0172 SerS Seryl-tRNA synthe 75.8 19 0.00042 38.8 9.9 83 245-327 29-116 (429)
196 PF07798 DUF1640: Protein of u 75.8 16 0.00035 34.1 8.4 49 249-297 48-97 (177)
197 PF08317 Spc7: Spc7 kinetochor 75.7 59 0.0013 33.2 13.0 9 38-46 15-23 (325)
198 PF04899 MbeD_MobD: MbeD/MobD 75.6 31 0.00067 28.5 8.9 51 256-306 11-61 (70)
199 PRK04863 mukB cell division pr 75.5 44 0.00095 41.3 13.8 74 224-297 321-407 (1486)
200 PF08537 NBP1: Fungal Nap bind 75.3 25 0.00055 36.7 10.2 85 222-306 120-215 (323)
201 KOG0804 Cytoplasmic Zn-finger 75.1 46 0.001 36.4 12.4 47 260-306 383-429 (493)
202 PF15030 DUF4527: Protein of u 75.0 75 0.0016 32.4 13.1 86 221-306 12-98 (277)
203 PRK00888 ftsB cell division pr 75.0 12 0.00027 32.5 6.9 30 243-272 32-61 (105)
204 PF08172 CASP_C: CASP C termin 75.0 12 0.00026 37.4 7.7 24 246-269 94-117 (248)
205 PLN02678 seryl-tRNA synthetase 74.9 46 0.001 36.0 12.5 60 247-306 42-104 (448)
206 KOG1103 Predicted coiled-coil 74.7 15 0.00032 39.2 8.5 66 234-299 227-292 (561)
207 PF03961 DUF342: Protein of un 74.6 22 0.00048 37.7 10.0 34 273-306 375-408 (451)
208 PF05335 DUF745: Protein of un 74.6 35 0.00076 32.9 10.4 66 241-306 63-128 (188)
209 PF05377 FlaC_arch: Flagella a 74.5 19 0.00041 28.6 7.1 21 277-297 18-38 (55)
210 COG1196 Smc Chromosome segrega 74.2 47 0.001 39.6 13.5 57 246-302 440-496 (1163)
211 PF04977 DivIC: Septum formati 74.0 20 0.00043 28.2 7.4 30 242-271 21-50 (80)
212 PRK10803 tol-pal system protei 73.9 19 0.0004 35.9 8.7 28 271-298 59-86 (263)
213 PF10473 CENP-F_leu_zip: Leuci 73.7 76 0.0017 29.4 13.2 30 271-300 71-100 (140)
214 PF10224 DUF2205: Predicted co 73.7 35 0.00075 28.9 9.0 53 243-295 6-59 (80)
215 PRK13729 conjugal transfer pil 73.7 15 0.00033 40.0 8.6 53 244-303 68-120 (475)
216 PF05812 Herpes_BLRF2: Herpesv 73.4 5 0.00011 36.2 4.1 30 243-272 1-30 (118)
217 PF04340 DUF484: Protein of un 72.9 14 0.00031 35.4 7.4 55 246-304 41-95 (225)
218 KOG0250 DNA repair protein RAD 72.9 61 0.0013 38.8 13.5 69 238-306 365-434 (1074)
219 KOG0996 Structural maintenance 72.8 43 0.00093 40.4 12.3 103 236-338 526-635 (1293)
220 PF05103 DivIVA: DivIVA protei 72.8 2.2 4.8E-05 36.9 1.8 44 245-288 25-68 (131)
221 TIGR02977 phageshock_pspA phag 72.6 51 0.0011 31.8 11.1 54 244-297 98-151 (219)
222 PF05278 PEARLI-4: Arabidopsis 72.5 1.1E+02 0.0023 31.5 13.7 24 277-300 218-241 (269)
223 PF08826 DMPK_coil: DMPK coile 72.3 50 0.0011 26.6 9.7 25 249-273 29-53 (61)
224 KOG4807 F-actin binding protei 72.3 31 0.00067 37.3 10.2 59 242-300 390-462 (593)
225 PF07558 Shugoshin_N: Shugoshi 72.1 4.3 9.3E-05 30.7 2.9 32 257-288 12-43 (46)
226 PF05384 DegS: Sensor protein 71.7 88 0.0019 29.5 12.1 80 229-308 18-126 (159)
227 KOG0243 Kinesin-like protein [ 71.4 36 0.00079 40.4 11.4 61 228-288 414-484 (1041)
228 TIGR01000 bacteriocin_acc bact 71.3 48 0.0011 35.1 11.6 59 247-305 238-309 (457)
229 PF02388 FemAB: FemAB family; 70.9 24 0.00051 37.1 9.1 56 245-304 242-297 (406)
230 PF04849 HAP1_N: HAP1 N-termin 70.9 35 0.00077 35.4 10.1 35 257-291 232-266 (306)
231 KOG0804 Cytoplasmic Zn-finger 70.7 29 0.00062 37.9 9.6 75 229-306 369-447 (493)
232 PF14712 Snapin_Pallidin: Snap 70.6 51 0.0011 27.2 9.3 36 245-280 14-49 (92)
233 PF14782 BBS2_C: Ciliary BBSom 70.6 56 0.0012 35.2 11.9 96 220-318 303-400 (431)
234 PF00038 Filament: Intermediat 70.5 83 0.0018 31.2 12.4 43 234-276 212-254 (312)
235 PF10482 CtIP_N: Tumour-suppre 70.4 33 0.00072 31.1 8.5 62 237-298 6-67 (120)
236 PF05529 Bap31: B-cell recepto 70.2 51 0.0011 30.8 10.3 26 280-305 154-179 (192)
237 PF08232 Striatin: Striatin fa 70.1 46 0.00099 30.2 9.6 62 248-309 7-68 (134)
238 PF12711 Kinesin-relat_1: Kine 70.1 20 0.00044 30.7 6.9 40 254-295 46-85 (86)
239 KOG4001 Axonemal dynein light 70.0 47 0.001 33.1 10.2 77 233-315 169-249 (259)
240 TIGR02132 phaR_Bmeg polyhydrox 69.7 35 0.00076 33.1 9.1 56 247-309 81-136 (189)
241 KOG3564 GTPase-activating prot 69.7 39 0.00084 37.4 10.4 86 220-308 27-112 (604)
242 smart00787 Spc7 Spc7 kinetocho 69.6 93 0.002 32.1 12.8 59 246-304 205-263 (312)
243 KOG1029 Endocytic adaptor prot 69.4 61 0.0013 37.9 12.2 15 283-297 440-454 (1118)
244 PRK10698 phage shock protein P 69.3 64 0.0014 31.5 11.1 53 246-298 100-152 (222)
245 PF09738 DUF2051: Double stran 69.3 28 0.0006 35.9 9.0 54 252-305 112-165 (302)
246 PF06428 Sec2p: GDP/GTP exchan 69.2 16 0.00035 31.9 6.2 62 244-305 7-69 (100)
247 smart00787 Spc7 Spc7 kinetocho 69.2 40 0.00087 34.7 10.1 7 39-45 12-18 (312)
248 PF15619 Lebercilin: Ciliary p 69.1 70 0.0015 30.8 11.2 32 235-266 8-40 (194)
249 PF07716 bZIP_2: Basic region 69.1 14 0.00031 28.1 5.3 30 265-294 24-53 (54)
250 PRK00846 hypothetical protein; 69.0 33 0.00071 28.9 7.7 11 287-297 41-51 (77)
251 PF15058 Speriolin_N: Sperioli 69.0 11 0.00024 36.7 5.7 34 247-288 7-40 (200)
252 KOG0933 Structural maintenance 68.8 73 0.0016 38.1 12.9 50 256-305 819-868 (1174)
253 PF07200 Mod_r: Modifier of ru 68.8 87 0.0019 28.0 11.6 77 228-306 39-115 (150)
254 PF09744 Jnk-SapK_ap_N: JNK_SA 68.7 51 0.0011 31.0 9.8 18 255-272 85-102 (158)
255 PF15035 Rootletin: Ciliary ro 68.6 43 0.00093 32.0 9.5 26 252-277 88-113 (182)
256 TIGR01843 type_I_hlyD type I s 68.5 1.3E+02 0.0029 30.4 13.6 7 322-328 274-280 (423)
257 PHA02562 46 endonuclease subun 68.2 93 0.002 33.2 13.0 41 240-280 332-372 (562)
258 KOG3650 Predicted coiled-coil 68.0 23 0.0005 31.5 6.9 41 252-292 63-103 (120)
259 PF12777 MT: Microtubule-bindi 68.0 20 0.00042 36.9 7.6 22 242-263 239-260 (344)
260 PRK14127 cell division protein 67.8 14 0.00031 32.8 5.7 34 271-304 35-68 (109)
261 PLN02939 transferase, transfer 67.8 52 0.0011 39.1 11.6 37 271-307 224-260 (977)
262 PF07889 DUF1664: Protein of u 67.7 78 0.0017 28.9 10.5 34 245-278 68-101 (126)
263 PF13863 DUF4200: Domain of un 67.6 59 0.0013 28.1 9.5 91 223-316 23-117 (126)
264 KOG0243 Kinesin-like protein [ 67.5 90 0.0019 37.4 13.4 63 243-305 446-522 (1041)
265 PF04949 Transcrip_act: Transc 67.5 72 0.0016 30.3 10.4 57 221-277 41-102 (159)
266 TIGR00414 serS seryl-tRNA synt 67.3 36 0.00077 36.2 9.6 58 249-306 41-102 (418)
267 PF12709 Kinetocho_Slk19: Cent 67.2 26 0.00056 30.2 6.9 50 245-301 27-77 (87)
268 PF15619 Lebercilin: Ciliary p 67.2 51 0.0011 31.8 9.8 12 246-257 97-108 (194)
269 PRK03918 chromosome segregatio 67.1 1.1E+02 0.0024 34.6 13.9 13 417-429 435-447 (880)
270 PLN03188 kinesin-12 family pro 66.9 36 0.00079 41.3 10.3 68 244-311 1154-1256(1320)
271 PF05837 CENP-H: Centromere pr 66.9 57 0.0012 28.4 9.2 67 248-315 13-79 (106)
272 PF06548 Kinesin-related: Kine 66.7 44 0.00095 36.6 10.0 61 244-304 384-479 (488)
273 PF10828 DUF2570: Protein of u 66.5 88 0.0019 27.2 10.7 52 247-298 34-85 (110)
274 PRK13182 racA polar chromosome 66.4 41 0.00089 32.0 8.9 56 254-309 87-147 (175)
275 PF09727 CortBP2: Cortactin-bi 66.0 83 0.0018 30.7 10.9 45 254-298 136-180 (192)
276 TIGR00606 rad50 rad50. This fa 65.8 75 0.0016 38.4 12.8 67 248-314 891-961 (1311)
277 KOG0946 ER-Golgi vesicle-tethe 65.7 52 0.0011 38.4 10.8 63 228-290 654-716 (970)
278 PF01166 TSC22: TSC-22/dip/bun 65.7 10 0.00022 30.5 4.0 22 245-266 21-42 (59)
279 PF14988 DUF4515: Domain of un 65.7 79 0.0017 30.7 10.9 39 256-294 160-198 (206)
280 PF07407 Seadorna_VP6: Seadorn 65.6 9.2 0.0002 40.2 4.7 32 245-276 32-63 (420)
281 PF14817 HAUS5: HAUS augmin-li 65.6 55 0.0012 37.0 11.0 44 241-284 96-139 (632)
282 PF05700 BCAS2: Breast carcino 65.5 32 0.00069 33.4 8.2 54 246-299 137-208 (221)
283 PF05667 DUF812: Protein of un 65.2 31 0.00066 38.6 8.9 54 245-298 335-388 (594)
284 PF01763 Herpes_UL6: Herpesvir 65.1 22 0.00049 39.5 7.8 25 245-269 363-387 (557)
285 KOG0239 Kinesin (KAR3 subfamil 65.0 71 0.0015 36.3 11.8 54 247-300 243-296 (670)
286 PF15397 DUF4618: Domain of un 64.8 1.1E+02 0.0023 31.3 11.8 48 251-298 178-225 (258)
287 PF09730 BicD: Microtubule-ass 64.5 47 0.001 38.1 10.3 65 246-310 70-137 (717)
288 PF01486 K-box: K-box region; 64.4 23 0.0005 30.0 6.2 27 263-289 72-98 (100)
289 PRK05892 nucleoside diphosphat 64.4 35 0.00075 31.8 7.9 54 245-298 11-72 (158)
290 PF10205 KLRAQ: Predicted coil 64.3 96 0.0021 27.5 10.0 54 259-312 5-58 (102)
291 PF07246 Phlebovirus_NSM: Phle 64.2 56 0.0012 33.3 9.8 40 270-309 199-238 (264)
292 TIGR03185 DNA_S_dndD DNA sulfu 64.0 84 0.0018 35.0 12.0 8 39-46 67-74 (650)
293 cd07596 BAR_SNX The Bin/Amphip 64.0 1.2E+02 0.0025 27.7 12.9 66 225-293 111-183 (218)
294 KOG1103 Predicted coiled-coil 63.8 72 0.0016 34.2 10.7 40 252-291 139-178 (561)
295 PF05700 BCAS2: Breast carcino 63.5 79 0.0017 30.7 10.4 40 262-301 178-217 (221)
296 PF03962 Mnd1: Mnd1 family; I 63.4 1.4E+02 0.0031 28.5 13.6 27 245-271 69-95 (188)
297 PF15070 GOLGA2L5: Putative go 63.4 1.4E+02 0.0029 33.9 13.5 49 258-306 86-134 (617)
298 PF05529 Bap31: B-cell recepto 63.4 50 0.0011 30.9 8.8 37 258-294 153-189 (192)
299 PF04999 FtsL: Cell division p 63.3 22 0.00049 29.7 5.9 37 257-293 33-69 (97)
300 PF03980 Nnf1: Nnf1 ; InterPr 63.3 12 0.00027 32.0 4.4 30 243-272 78-107 (109)
301 PF04375 HemX: HemX; InterPro 63.3 66 0.0014 33.6 10.5 44 249-292 90-135 (372)
302 KOG4360 Uncharacterized coiled 62.9 50 0.0011 36.7 9.7 42 245-286 219-260 (596)
303 PF13805 Pil1: Eisosome compon 62.9 46 0.00099 34.0 8.9 71 224-298 127-198 (271)
304 PF11544 Spc42p: Spindle pole 62.9 34 0.00074 28.9 6.7 46 248-293 8-53 (76)
305 PF06419 COG6: Conserved oligo 62.7 1.2E+02 0.0025 34.0 12.9 63 244-306 44-106 (618)
306 PF05377 FlaC_arch: Flagella a 62.6 26 0.00056 27.9 5.6 23 247-269 2-24 (55)
307 PF06216 RTBV_P46: Rice tungro 62.5 49 0.0011 34.0 9.0 35 245-279 78-112 (389)
308 PRK10963 hypothetical protein; 62.4 22 0.00048 34.4 6.5 49 249-301 41-89 (223)
309 PF11365 DUF3166: Protein of u 62.4 33 0.00072 30.0 6.8 38 249-293 5-42 (96)
310 PF13870 DUF4201: Domain of un 61.7 1.4E+02 0.0029 27.7 13.0 24 277-300 149-172 (177)
311 PF07334 IFP_35_N: Interferon- 61.7 37 0.00079 28.7 6.7 43 276-328 3-45 (76)
312 KOG3335 Predicted coiled-coil 61.7 18 0.00039 34.9 5.5 39 222-266 89-127 (181)
313 PF09730 BicD: Microtubule-ass 61.6 74 0.0016 36.6 11.2 47 253-299 98-147 (717)
314 KOG0971 Microtubule-associated 61.5 51 0.0011 39.0 9.8 36 241-276 406-441 (1243)
315 KOG0946 ER-Golgi vesicle-tethe 61.4 76 0.0016 37.2 11.1 15 31-45 386-400 (970)
316 PF10168 Nup88: Nuclear pore c 61.2 1.1E+02 0.0024 35.1 12.5 33 244-276 578-610 (717)
317 KOG0995 Centromere-associated 61.1 1.2E+02 0.0027 34.0 12.4 44 244-287 279-322 (581)
318 PF07558 Shugoshin_N: Shugoshi 61.1 9.4 0.0002 28.9 2.9 43 225-268 2-44 (46)
319 PRK02224 chromosome segregatio 60.9 1.5E+02 0.0033 33.7 13.6 17 289-305 574-590 (880)
320 PF14257 DUF4349: Domain of un 60.8 57 0.0012 31.9 9.0 57 249-305 136-194 (262)
321 KOG1853 LIS1-interacting prote 60.6 1.3E+02 0.0027 31.2 11.4 62 237-302 125-186 (333)
322 TIGR02231 conserved hypothetic 60.5 1.1E+02 0.0023 33.1 11.8 47 254-300 126-172 (525)
323 TIGR02209 ftsL_broad cell divi 60.4 31 0.00066 27.9 6.0 31 242-272 28-58 (85)
324 TIGR00998 8a0101 efflux pump m 60.4 64 0.0014 31.9 9.4 23 281-303 140-162 (334)
325 PF03980 Nnf1: Nnf1 ; InterPr 60.4 53 0.0011 28.1 7.8 32 263-294 77-108 (109)
326 PF10212 TTKRSYEDQ: Predicted 60.2 95 0.002 34.5 11.3 53 247-299 422-474 (518)
327 COG2900 SlyX Uncharacterized p 60.2 67 0.0015 26.9 7.9 12 246-257 9-20 (72)
328 KOG2264 Exostosin EXT1L [Signa 60.1 1.6E+02 0.0034 33.7 12.9 63 248-310 89-151 (907)
329 PF14282 FlxA: FlxA-like prote 59.9 69 0.0015 27.9 8.4 16 249-264 23-38 (106)
330 PF12709 Kinetocho_Slk19: Cent 59.9 95 0.0021 26.9 9.0 43 243-285 40-82 (87)
331 KOG1318 Helix loop helix trans 59.8 51 0.0011 35.5 9.1 78 221-298 226-322 (411)
332 PRK10929 putative mechanosensi 59.4 1.3E+02 0.0028 36.4 13.0 54 256-309 262-315 (1109)
333 PF10168 Nup88: Nuclear pore c 59.3 76 0.0016 36.4 10.8 48 248-295 561-608 (717)
334 PF05622 HOOK: HOOK protein; 59.2 3.1 6.7E-05 46.6 0.0 61 238-298 318-381 (713)
335 PF14645 Chibby: Chibby family 59.2 33 0.00071 30.7 6.4 37 250-286 76-112 (116)
336 KOG4657 Uncharacterized conser 59.1 2.1E+02 0.0045 29.0 12.6 8 286-293 99-106 (246)
337 PRK10698 phage shock protein P 59.0 1.2E+02 0.0026 29.7 10.8 50 252-301 99-148 (222)
338 TIGR00219 mreC rod shape-deter 59.0 51 0.0011 33.3 8.6 45 243-290 64-108 (283)
339 KOG4673 Transcription factor T 58.8 1E+02 0.0023 35.6 11.4 29 277-305 577-605 (961)
340 PF06657 Cep57_MT_bd: Centroso 58.6 1.1E+02 0.0023 25.6 9.1 58 249-306 14-76 (79)
341 COG1792 MreC Cell shape-determ 58.4 29 0.00063 35.1 6.7 31 256-286 70-103 (284)
342 KOG0933 Structural maintenance 58.4 1.4E+02 0.0031 35.9 12.7 59 244-302 814-872 (1174)
343 KOG0709 CREB/ATF family transc 58.4 28 0.00061 38.0 6.9 26 269-294 275-300 (472)
344 PF14362 DUF4407: Domain of un 58.2 2E+02 0.0044 28.6 12.8 30 244-273 134-163 (301)
345 KOG4815 Muscular protein impli 58.1 2.6E+02 0.0056 29.8 13.5 88 247-340 304-391 (511)
346 KOG0957 PHD finger protein [Ge 58.1 1E+02 0.0022 34.4 11.0 62 247-308 440-501 (707)
347 PRK14160 heat shock protein Gr 58.0 91 0.002 30.7 9.8 40 246-285 55-94 (211)
348 KOG0161 Myosin class II heavy 58.0 1.3E+02 0.0029 38.3 13.2 40 234-273 904-943 (1930)
349 PF10146 zf-C4H2: Zinc finger- 57.7 1.1E+02 0.0024 30.4 10.5 51 245-295 50-103 (230)
350 PRK09174 F0F1 ATP synthase sub 57.7 1.9E+02 0.004 28.0 13.0 45 223-267 83-127 (204)
351 COG3937 Uncharacterized conser 57.5 50 0.0011 29.6 7.1 41 264-304 66-107 (108)
352 TIGR03185 DNA_S_dndD DNA sulfu 57.5 1.7E+02 0.0036 32.7 12.9 20 284-303 266-285 (650)
353 TIGR03545 conserved hypothetic 57.4 62 0.0014 35.9 9.5 28 233-260 179-206 (555)
354 TIGR01010 BexC_CtrB_KpsE polys 57.1 1.5E+02 0.0032 30.3 11.6 31 245-275 170-200 (362)
355 KOG4643 Uncharacterized coiled 56.9 65 0.0014 38.5 9.8 31 243-273 528-558 (1195)
356 PF04136 Sec34: Sec34-like fam 56.8 1.2E+02 0.0027 28.0 10.1 65 244-308 20-87 (157)
357 KOG0995 Centromere-associated 56.8 56 0.0012 36.6 8.9 51 248-298 276-326 (581)
358 KOG4807 F-actin binding protei 56.7 70 0.0015 34.8 9.3 63 244-309 417-489 (593)
359 PF11180 DUF2968: Protein of u 56.4 2E+02 0.0044 28.2 11.6 56 246-301 113-168 (192)
360 PF00261 Tropomyosin: Tropomyo 56.3 2E+02 0.0043 28.0 11.9 59 247-305 94-152 (237)
361 TIGR01000 bacteriocin_acc bact 56.2 85 0.0018 33.3 10.0 64 243-306 241-317 (457)
362 PRK10636 putative ABC transpor 56.1 93 0.002 34.6 10.7 59 244-302 562-627 (638)
363 KOG4360 Uncharacterized coiled 55.9 71 0.0015 35.6 9.4 60 248-307 243-302 (596)
364 COG3352 FlaC Putative archaeal 55.9 78 0.0017 30.1 8.5 55 245-299 79-134 (157)
365 PF07989 Microtub_assoc: Micro 55.8 1.2E+02 0.0026 25.2 9.2 35 269-303 39-73 (75)
366 PRK04863 mukB cell division pr 55.7 1.8E+02 0.0039 36.2 13.7 72 241-312 358-429 (1486)
367 PF10498 IFT57: Intra-flagella 55.4 2E+02 0.0043 30.4 12.4 25 105-131 95-119 (359)
368 PF06103 DUF948: Bacterial pro 55.3 1.2E+02 0.0026 25.0 10.2 46 247-292 28-73 (90)
369 COG3879 Uncharacterized protei 55.3 52 0.0011 33.2 7.8 13 280-292 89-101 (247)
370 PF06216 RTBV_P46: Rice tungro 55.3 62 0.0013 33.3 8.3 51 245-295 64-114 (389)
371 PF01486 K-box: K-box region; 55.1 67 0.0015 27.2 7.5 23 246-268 76-98 (100)
372 PF14282 FlxA: FlxA-like prote 54.9 57 0.0012 28.4 7.1 14 246-259 27-40 (106)
373 PRK14872 rod shape-determining 54.8 43 0.00094 35.1 7.4 29 273-301 57-85 (337)
374 KOG0612 Rho-associated, coiled 54.7 1.6E+02 0.0034 36.1 12.5 62 242-303 462-531 (1317)
375 KOG3650 Predicted coiled-coil 54.7 55 0.0012 29.2 6.9 41 244-284 69-109 (120)
376 PF04728 LPP: Lipoprotein leuc 54.6 1.1E+02 0.0024 24.5 8.2 21 247-267 5-25 (56)
377 PF10158 LOH1CR12: Tumour supp 54.6 1.6E+02 0.0036 26.8 10.2 76 248-323 52-127 (131)
378 KOG0999 Microtubule-associated 54.5 1E+02 0.0022 34.9 10.4 47 252-298 170-219 (772)
379 PF04728 LPP: Lipoprotein leuc 54.3 1.1E+02 0.0024 24.4 8.0 19 276-294 20-38 (56)
380 PF13815 Dzip-like_N: Iguana/D 54.0 83 0.0018 27.6 8.1 13 280-292 94-106 (118)
381 PRK10361 DNA recombination pro 53.8 2.4E+02 0.0052 31.1 13.0 19 253-271 68-86 (475)
382 PF10883 DUF2681: Protein of u 53.7 66 0.0014 27.7 7.1 34 254-292 32-65 (87)
383 PF13815 Dzip-like_N: Iguana/D 53.5 50 0.0011 29.0 6.6 39 257-295 78-116 (118)
384 PF07058 Myosin_HC-like: Myosi 53.4 76 0.0017 33.3 8.7 38 279-316 114-151 (351)
385 PF13851 GAS: Growth-arrest sp 53.0 2.2E+02 0.0048 27.5 12.8 32 265-296 92-123 (201)
386 PTZ00454 26S protease regulato 52.6 56 0.0012 34.6 7.9 7 300-306 56-62 (398)
387 PHA03011 hypothetical protein; 52.6 1E+02 0.0022 27.7 8.2 49 245-293 64-112 (120)
388 PF08232 Striatin: Striatin fa 52.4 47 0.001 30.1 6.4 43 249-291 29-71 (134)
389 KOG0980 Actin-binding protein 52.4 1.7E+02 0.0037 34.6 12.1 26 249-274 491-516 (980)
390 PRK14127 cell division protein 52.4 82 0.0018 28.1 7.7 24 246-269 31-54 (109)
391 PF13166 AAA_13: AAA domain 52.4 2.3E+02 0.0049 31.4 12.9 59 248-306 406-464 (712)
392 KOG4343 bZIP transcription fac 52.2 60 0.0013 36.4 8.2 26 247-272 311-336 (655)
393 COG4372 Uncharacterized protei 52.1 3.5E+02 0.0077 29.6 13.5 38 234-271 133-170 (499)
394 KOG0978 E3 ubiquitin ligase in 52.0 2.3E+02 0.005 32.7 12.9 62 245-306 552-613 (698)
395 PF13870 DUF4201: Domain of un 51.8 1.7E+02 0.0038 27.0 10.2 53 254-306 44-117 (177)
396 PF03670 UPF0184: Uncharacteri 51.6 87 0.0019 26.9 7.4 39 247-292 35-73 (83)
397 PRK10476 multidrug resistance 51.5 1E+02 0.0022 31.1 9.4 27 276-302 141-167 (346)
398 PF05557 MAD: Mitotic checkpoi 51.4 1.2E+02 0.0026 34.3 10.7 63 244-306 509-625 (722)
399 PF10779 XhlA: Haemolysin XhlA 51.4 1.1E+02 0.0024 24.7 7.7 36 271-306 18-53 (71)
400 TIGR00606 rad50 rad50. This fa 51.3 2.1E+02 0.0046 34.7 13.3 64 228-291 840-906 (1311)
401 PF07200 Mod_r: Modifier of ru 51.0 1.2E+02 0.0027 27.0 8.9 44 233-276 36-79 (150)
402 KOG4673 Transcription factor T 50.9 2E+02 0.0043 33.5 12.0 56 251-306 703-758 (961)
403 PF07767 Nop53: Nop53 (60S rib 50.4 87 0.0019 32.6 8.9 38 220-257 272-309 (387)
404 PRK11281 hypothetical protein; 50.3 2.3E+02 0.005 34.3 13.2 56 254-309 280-335 (1113)
405 PTZ00454 26S protease regulato 50.2 63 0.0014 34.2 7.8 17 251-267 28-44 (398)
406 PF13118 DUF3972: Protein of u 50.1 66 0.0014 29.5 6.9 60 222-291 65-124 (126)
407 TIGR02680 conserved hypothetic 49.9 2.7E+02 0.006 34.2 14.0 43 234-276 871-913 (1353)
408 PTZ00464 SNF-7-like protein; P 49.7 2.2E+02 0.0048 27.9 10.9 31 250-280 66-96 (211)
409 PRK13923 putative spore coat p 49.7 1.7E+02 0.0037 28.1 9.9 44 266-309 111-154 (170)
410 KOG1319 bHLHZip transcription 49.7 2.7E+02 0.0059 27.6 13.0 104 196-304 35-150 (229)
411 KOG2189 Vacuolar H+-ATPase V0 49.5 1.3E+02 0.0028 35.1 10.5 61 242-302 53-128 (829)
412 PF11544 Spc42p: Spindle pole 49.4 1.6E+02 0.0035 24.9 9.6 38 270-307 9-46 (76)
413 KOG0980 Actin-binding protein 49.4 2.4E+02 0.0052 33.5 12.6 19 27-45 152-170 (980)
414 PF10234 Cluap1: Clusterin-ass 49.4 1.3E+02 0.0028 30.7 9.6 50 257-309 167-216 (267)
415 KOG2129 Uncharacterized conser 49.2 33 0.00071 37.3 5.6 55 248-302 46-100 (552)
416 PF05600 DUF773: Protein of un 49.1 73 0.0016 35.0 8.3 57 244-300 431-487 (507)
417 PF05911 DUF869: Plant protein 48.8 1.1E+02 0.0023 35.7 9.8 56 244-299 91-167 (769)
418 PF10359 Fmp27_WPPW: RNA pol I 48.8 70 0.0015 34.5 8.1 58 245-307 170-227 (475)
419 TIGR01461 greB transcription e 48.7 48 0.001 30.7 6.0 50 247-296 10-68 (156)
420 PF06008 Laminin_I: Laminin Do 48.6 2.8E+02 0.006 27.3 12.1 50 247-296 47-96 (264)
421 PRK01156 chromosome segregatio 48.5 3.1E+02 0.0068 31.5 13.6 13 286-298 255-267 (895)
422 COG5570 Uncharacterized small 48.2 30 0.00065 27.6 3.8 50 245-294 5-54 (57)
423 KOG2751 Beclin-like protein [S 48.2 2.5E+02 0.0054 30.8 11.8 65 235-299 154-223 (447)
424 KOG3156 Uncharacterized membra 48.0 1.1E+02 0.0024 30.4 8.6 54 256-312 98-152 (220)
425 COG5185 HEC1 Protein involved 47.8 94 0.002 34.5 8.7 55 244-298 486-544 (622)
426 PRK09841 cryptic autophosphory 47.4 1.2E+02 0.0026 34.4 10.0 12 34-45 15-26 (726)
427 PF03449 GreA_GreB_N: Transcri 47.3 1.1E+02 0.0023 25.3 7.1 52 247-298 11-71 (74)
428 PRK11147 ABC transporter ATPas 47.2 92 0.002 34.5 8.9 50 247-296 570-625 (635)
429 TIGR02680 conserved hypothetic 47.1 2.9E+02 0.0063 34.0 13.6 11 112-122 163-173 (1353)
430 PF09602 PhaP_Bmeg: Polyhydrox 47.0 2.7E+02 0.0058 26.7 11.5 68 236-303 25-101 (165)
431 KOG0483 Transcription factor H 46.8 31 0.00067 33.6 4.6 43 260-302 106-148 (198)
432 PF07047 OPA3: Optic atrophy 3 46.7 42 0.00092 30.3 5.2 39 221-265 94-132 (134)
433 PF12808 Mto2_bdg: Micro-tubul 46.6 55 0.0012 25.8 5.1 26 248-273 25-50 (52)
434 COG1340 Uncharacterized archae 46.5 3.6E+02 0.0078 28.1 12.3 11 229-239 31-41 (294)
435 PF09403 FadA: Adhesion protei 46.5 2.1E+02 0.0046 26.1 9.6 41 227-269 36-76 (126)
436 PF07889 DUF1664: Protein of u 46.4 1.9E+02 0.0042 26.4 9.3 47 259-305 61-107 (126)
437 TIGR01069 mutS2 MutS2 family p 46.3 1.8E+02 0.0039 33.6 11.2 12 107-118 413-424 (771)
438 PRK10722 hypothetical protein; 46.2 2.7E+02 0.0058 28.4 11.0 29 274-302 177-205 (247)
439 cd07429 Cby_like Chibby, a nuc 46.2 45 0.00097 29.8 5.1 22 254-275 81-102 (108)
440 PF15290 Syntaphilin: Golgi-lo 46.2 1.9E+02 0.0041 30.1 10.1 24 276-299 120-143 (305)
441 PF10046 BLOC1_2: Biogenesis o 46.2 1.9E+02 0.0041 24.7 10.0 66 244-309 13-78 (99)
442 PRK13454 F0F1 ATP synthase sub 46.1 2.6E+02 0.0056 26.3 13.7 46 223-268 61-106 (181)
443 PF09486 HrpB7: Bacterial type 46.1 2.1E+02 0.0046 27.1 9.8 39 268-306 81-119 (158)
444 PLN02320 seryl-tRNA synthetase 46.0 1.1E+02 0.0024 33.8 9.1 58 249-306 104-163 (502)
445 PRK11546 zraP zinc resistance 45.9 1.2E+02 0.0025 28.4 8.0 50 246-295 62-111 (143)
446 KOG0996 Structural maintenance 45.9 2.5E+02 0.0055 34.3 12.3 71 230-300 527-597 (1293)
447 COG1340 Uncharacterized archae 45.8 3.4E+02 0.0074 28.3 12.0 51 248-298 30-80 (294)
448 KOG0982 Centrosomal protein Nu 45.7 2E+02 0.0044 31.6 10.7 48 241-297 281-328 (502)
449 PF13874 Nup54: Nucleoporin co 45.6 67 0.0015 29.1 6.3 57 247-303 67-123 (141)
450 PF10174 Cast: RIM-binding pro 45.2 3.6E+02 0.0079 31.5 13.3 51 246-296 358-408 (775)
451 PF01519 DUF16: Protein of unk 45.2 1.1E+02 0.0023 27.3 7.2 22 287-308 78-99 (102)
452 KOG2260 Cell division cycle 37 45.2 1.5E+02 0.0033 31.6 9.6 64 241-304 43-120 (372)
453 KOG0483 Transcription factor H 44.6 53 0.0012 32.0 5.8 45 255-299 108-152 (198)
454 KOG0249 LAR-interacting protei 44.5 2.8E+02 0.006 32.5 11.9 42 253-294 217-258 (916)
455 PF03245 Phage_lysis: Bacterio 44.5 1.9E+02 0.0041 25.9 9.0 20 272-291 41-60 (125)
456 KOG2991 Splicing regulator [RN 44.4 1.2E+02 0.0025 31.4 8.3 65 245-309 236-300 (330)
457 cd07666 BAR_SNX7 The Bin/Amphi 44.4 1.3E+02 0.0028 30.2 8.6 50 241-293 159-208 (243)
458 PF04859 DUF641: Plant protein 44.3 73 0.0016 29.3 6.3 30 256-285 98-127 (131)
459 PF13874 Nup54: Nucleoporin co 44.2 1.2E+02 0.0026 27.4 7.8 35 245-279 51-85 (141)
460 PF07111 HCR: Alpha helical co 44.1 4.1E+02 0.0089 30.9 13.2 26 238-263 507-532 (739)
461 PRK04778 septation ring format 43.9 2.4E+02 0.0053 31.1 11.4 46 261-306 378-423 (569)
462 PRK00409 recombination and DNA 43.8 1.9E+02 0.0042 33.4 11.0 23 228-250 520-542 (782)
463 PRK10920 putative uroporphyrin 43.8 2.6E+02 0.0057 29.9 11.2 44 249-292 96-141 (390)
464 KOG0976 Rho/Rac1-interacting s 43.8 1.5E+02 0.0032 35.1 9.8 24 219-242 100-123 (1265)
465 PRK03992 proteasome-activating 43.6 85 0.0018 32.7 7.6 20 278-297 27-46 (389)
466 PF06428 Sec2p: GDP/GTP exchan 43.6 26 0.00055 30.7 3.2 60 248-307 18-78 (100)
467 COG4372 Uncharacterized protei 43.5 4.7E+02 0.01 28.6 12.9 51 236-286 128-178 (499)
468 KOG0249 LAR-interacting protei 43.4 1.4E+02 0.003 34.8 9.4 41 261-301 218-258 (916)
469 TIGR03007 pepcterm_ChnLen poly 43.3 2.1E+02 0.0045 30.4 10.5 84 223-306 253-350 (498)
470 PF05557 MAD: Mitotic checkpoi 43.2 26 0.00057 39.4 4.1 95 213-307 429-537 (722)
471 KOG0964 Structural maintenance 43.1 3.2E+02 0.0069 33.1 12.4 87 223-309 396-482 (1200)
472 PRK11091 aerobic respiration c 43.0 4.2E+02 0.0091 29.5 13.2 84 223-306 81-164 (779)
473 PRK14143 heat shock protein Gr 42.8 1.5E+02 0.0033 29.7 8.8 58 249-306 64-123 (238)
474 PRK01156 chromosome segregatio 42.8 4.6E+02 0.0099 30.2 13.8 86 221-306 619-714 (895)
475 PF11382 DUF3186: Protein of u 42.8 56 0.0012 33.4 6.0 39 268-306 34-72 (308)
476 PF10226 DUF2216: Uncharacteri 42.7 2.1E+02 0.0045 28.2 9.4 69 234-308 20-88 (195)
477 PF11068 YlqD: YlqD protein; 42.7 2.7E+02 0.0058 25.5 10.9 67 243-309 18-89 (131)
478 PRK11281 hypothetical protein; 42.6 3E+02 0.0065 33.4 12.5 83 223-305 159-252 (1113)
479 PF14817 HAUS5: HAUS augmin-li 42.5 5.3E+02 0.012 29.5 13.9 86 221-306 76-161 (632)
480 PF14523 Syntaxin_2: Syntaxin- 42.4 2E+02 0.0042 23.8 9.0 59 248-306 29-90 (102)
481 PF15066 CAGE1: Cancer-associa 42.3 1.5E+02 0.0033 32.7 9.3 66 244-309 403-468 (527)
482 PF08912 Rho_Binding: Rho Bind 42.3 1.2E+02 0.0026 25.2 6.7 48 250-297 1-48 (69)
483 PF11500 Cut12: Spindle pole b 42.2 2E+02 0.0043 27.2 9.0 55 223-277 83-137 (152)
484 PF06698 DUF1192: Protein of u 42.2 82 0.0018 25.3 5.6 34 247-280 23-56 (59)
485 PRK11546 zraP zinc resistance 42.2 2.9E+02 0.0064 25.8 10.1 61 244-304 46-113 (143)
486 PRK03992 proteasome-activating 42.0 90 0.0019 32.6 7.5 48 253-300 2-49 (389)
487 PF00435 Spectrin: Spectrin re 42.0 1.6E+02 0.0036 22.8 10.1 61 245-305 34-98 (105)
488 PF05600 DUF773: Protein of un 41.9 1.9E+02 0.0041 31.9 10.1 62 244-305 431-492 (507)
489 TIGR01730 RND_mfp RND family e 41.6 2.1E+02 0.0046 27.7 9.6 78 244-321 63-143 (322)
490 COG1730 GIM5 Predicted prefold 41.6 1.2E+02 0.0027 28.2 7.5 45 247-291 96-140 (145)
491 PF03234 CDC37_N: Cdc37 N term 41.5 1.8E+02 0.0039 28.0 8.7 76 201-292 11-86 (177)
492 KOG0976 Rho/Rac1-interacting s 41.5 1.7E+02 0.0037 34.7 9.8 71 238-308 78-148 (1265)
493 COG3352 FlaC Putative archaeal 41.3 2.6E+02 0.0057 26.6 9.5 64 244-307 71-135 (157)
494 KOG0994 Extracellular matrix g 41.1 2.9E+02 0.0064 34.1 11.8 85 223-307 1660-1744(1758)
495 PF03233 Cauli_AT: Aphid trans 41.1 79 0.0017 30.2 6.2 51 247-308 113-163 (163)
496 PF04420 CHD5: CHD5-like prote 40.9 77 0.0017 29.4 6.1 60 249-308 37-101 (161)
497 PRK11519 tyrosine kinase; Prov 40.9 2E+02 0.0044 32.5 10.5 77 232-308 254-332 (719)
498 KOG0964 Structural maintenance 40.8 3.1E+02 0.0066 33.2 11.8 77 229-305 416-492 (1200)
499 PF15556 Zwint: ZW10 interacto 40.7 3.9E+02 0.0085 26.8 12.3 76 224-299 113-188 (252)
500 KOG1850 Myosin-like coiled-coi 40.7 2.2E+02 0.0047 30.4 9.7 64 244-307 249-312 (391)
No 1
>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes. They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.
Probab=99.94 E-value=5.9e-28 Score=210.66 Aligned_cols=114 Identities=39% Similarity=0.604 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCCCCCCCCccCcCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 013689 291 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSF 370 (438)
Q Consensus 291 ~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~~~~~~s~~~~vp~q~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 370 (438)
+||+|||||||+|||++|+|++|+.+.++++++|||.++++|+.+++++|+|+++.|||+++.++.+++..+ |.
T Consensus 1 TLRAKVKMAEe~VkRvTg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~Piq~~~~~~~~~~~~~~~i~~~~-----~~- 74 (115)
T PF12498_consen 1 TLRAKVKMAEETVKRVTGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVPIQDNSNNYFHQPNPNPTISVHG-----NN- 74 (115)
T ss_pred ChhHHHHHHHHHHHHHhccCccccccccCCCCCCCCCCCcccccccccCCccCCchhhccCCCCCCCcCCCC-----cc-
Confidence 599999999999999999999999999999999999999898887899999999999999988888877422 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCccCCC
Q 013689 371 PSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP 417 (438)
Q Consensus 371 ~~~~~~p~~~~~q~~~~~~~m~~~~s~q~vaslehlqkr~~~~~~~~ 417 (438)
+.+. .+...++.||+|+++|||||||||||||||+|+++|
T Consensus 75 ----~~~~---~~~~~~~~~~~~t~smqrvaslEhlQkri~~g~~~~ 114 (115)
T PF12498_consen 75 ----DNPE---PGGAFVGGKMGRTASMQRVASLEHLQKRIRGGPTSS 114 (115)
T ss_pred ----cccc---cccccccccccCCccCccchhHHHHHHHhcCCCCCC
Confidence 1221 122357889999999999999999999999998765
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.31 E-value=1.3e-11 Score=96.90 Aligned_cols=62 Identities=40% Similarity=0.547 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 282 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN 282 (438)
.++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999987666665555544
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.27 E-value=3.7e-11 Score=116.75 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..|+|-+||+++||.+|+.+|.|||+++++||.+|.+|+.||+.|+.+.+.|+.+.+.|.++|.+|..+++.|+..|...
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred HH
Q 013689 300 EE 301 (438)
Q Consensus 300 E~ 301 (438)
.+
T Consensus 145 ~~ 146 (292)
T KOG4005|consen 145 KQ 146 (292)
T ss_pred HH
Confidence 54
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.26 E-value=3.4e-11 Score=94.34 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 282 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN 282 (438)
+.|+.+|+++||+||+++|.||++|+++|+.+|..|+.+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999999998888888887776
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.16 E-value=5.5e-11 Score=125.49 Aligned_cols=70 Identities=36% Similarity=0.424 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 217 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 217 ~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
.+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..++.||.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4677889999999999999999999999999999999999999999999999999999999999999996
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.00 E-value=5.6e-10 Score=111.03 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
+..-.||.-|++||||+||.+|+|||+|++.||.+|..||.+|..|.++|..|++-|..
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 34457888899999999999999999999999999999999999999999999987764
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.97 E-value=3.6e-09 Score=80.79 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888 9999999999999999999999999999999999999887764
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.95 E-value=1.1e-09 Score=114.40 Aligned_cols=72 Identities=33% Similarity=0.438 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
...||+||+|+|.+||+.||+|||.|++.||.+|.....||++|.++++ .|+.+|+.|-+|+..|++.+.+-
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence 4678999999999999999999999999999999999999999998887 67799999999999999988774
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.02 E-value=1.1e-07 Score=79.89 Aligned_cols=59 Identities=37% Similarity=0.501 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
.+.|.+||.++||.+|++||.||..++++|+.++..|+.+...|..++..+...+..+.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999888877777777666655444433
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.91 E-value=3.7e-05 Score=76.24 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=42.6
Q ss_pred hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 221 ~d~KR~RR-~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
.|..|..| .++||++|.+||.||.+||..||.+|..|..+|..|...+..
T Consensus 202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 34445445 799999999999999999999999999999999888777664
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.11 E-value=0.0046 Score=62.50 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=48.5
Q ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 222 d~KR~RR-~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
+.|+.|| .+.|..+|-|=|+||++..++|+.++..|+.+|.+|+.++.. ++.|=+.||+=+.+.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~-------lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE-------LEREIRYLKQLILEV 288 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4555555 455566799999999999999999999999999999988884 445555565554444
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.10 E-value=0.0042 Score=56.35 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
-.|..||-|+||=.|+-+|-|+-++-.+||.+...|..|. . .|..||..++.++..++.|++.+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv-------~-------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV-------E-------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999887777776655444333 3 445666667777777776665443
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.77 E-value=0.0057 Score=60.84 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=38.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
=..|.-+|=+++||||.+.+...+++..+|..|+.||..|+.++..
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557889999999999999999999999998888888777764
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.60 E-value=0.034 Score=45.68 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+-++.||.+|..+-.....|..++..|.++...+..+|..|+.+...|+.......+.++.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999988888888888888888888888888888888888887766665554443
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.40 E-value=0.0063 Score=66.63 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|=+||.=|||.+|+++|+||...|..||..|..|+.|-++|.++-. ++...=.+++.++..|-.++
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999999999988877654 45555667777777775543
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.07 E-value=0.065 Score=43.47 Aligned_cols=60 Identities=22% Similarity=0.158 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
+..|+.+|.+|-.....|+.++..|.++...+..|++.|..+++.-|.|| |.++.|+..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhh
Confidence 45677777777777777777777777777777788888887777777765 4456666544
No 17
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.75 E-value=0.081 Score=49.70 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
....|+.||..|..++..|++++..|..||..|..++..+....+++-.+++|...+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999999999999988888887654
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.70 E-value=0.12 Score=49.87 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
...|..++....+....|..+|+.|+.+++.++.++..++...+++.
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555556666666666666666666666555555443
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.49 E-value=0.087 Score=46.23 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+|=.++..|+.....|..++..|+.+...+..||..|+.+.+.||.+|...+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666667777777777777778888888888888888888776654
No 20
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.41 E-value=0.038 Score=41.63 Aligned_cols=42 Identities=24% Similarity=0.444 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
+|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577788888888888888888888889999988888877764
No 21
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.35 E-value=0.17 Score=41.80 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~--------~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
|.+.+.+++.|+.||=.|+-++-.|.+++. .+..+|-.|+.+++.|+..|+.....+....
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998777 4578999999999999999988877766543
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.95 E-value=0.21 Score=40.60 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+.++.|-....+|+.||..|+.++..+......|...|..=+.+|+.|=.+|+.+|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467888888888999999999999999888888888888888999888888887764
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.78 E-value=0.19 Score=44.53 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+|=.++..|+.....|..++..|++....+..||..|+.+...||.+|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666677777777777777788888888888888888777654
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.74 E-value=0.48 Score=38.97 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+..+-..+..|+.|+..|+.+...+.+....|..+|..|+.+-.....+|..+-.-
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777777777777888888889999988888888887765433
No 25
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.58 E-value=0.35 Score=39.42 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
+.+++-|..+++..+.+|..|..+-.....++..+-.+|..|+++++.|+.++..
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888999999999998887654
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.28 Score=40.79 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
-+.=|.-+|..|+.+|..|..+...+++....|..+|..||.+-...+.++..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999988887666543
No 27
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.42 E-value=0.093 Score=56.43 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
..+++||.|++.|+.|.+.|.++...+++++..++.||+.|+++++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999999999999999999999986553
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.35 E-value=0.22 Score=43.78 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
..+.+||.++..|-.+...|+.++..|.+....|..||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999876
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.28 E-value=0.84 Score=50.12 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
|....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+..+++.++..+++.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777777788888888888888888888888888888888888888888888888888888887766
Q ss_pred HHH
Q 013689 304 KRV 306 (438)
Q Consensus 304 ~Rl 306 (438)
+.+
T Consensus 230 ~~l 232 (546)
T PF07888_consen 230 KTL 232 (546)
T ss_pred HHH
Confidence 654
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.25 E-value=0.34 Score=45.67 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
.++++.+...+..-+.-.......+.++..-+..|..|...|.-++..+.+++..|..||+.|-.....
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555555555555555555555555555555555555444433
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.00 E-value=0.28 Score=43.48 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
..+..||.++..|-.+...|+..+..+.++...|..||..||..+.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999844
No 32
>PRK11637 AmiB activator; Provisional
Probab=93.72 E-value=1.4 Score=46.11 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
...-...++.|+.++..++.+...+..++..++++...+..+=..|+.++..++..+
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555544444444444444333
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.70 E-value=1.2 Score=43.20 Aligned_cols=53 Identities=6% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
++..+|+.+++.+..+...|..++..|++++..+..+++.|++++..++..+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444454455555555666666666666655443
No 34
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.62 E-value=0.35 Score=43.05 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
++=.+|..|+.....|.+++..+.+++..+..||..|+-+.+.||.+|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34456777777778888888888888999999999999999999988866
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.61 E-value=1.1 Score=40.40 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
+..|=...||..-....++...++.|+..+..|+.++..+..++..+..+...+..+++.+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555544444444444444333
No 36
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=93.41 E-value=1.2 Score=36.61 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+..||.-=+..+..-......+..++..+.....+|..|++++..|..+|..+.+.+.|+.
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444445556666777788888888888899999999999999999999999998875
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.34 E-value=3 Score=37.56 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=42.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 226 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 226 ~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+-.++.-|..-...|.-=...+..|+.....|+..+..|..+++.+.+++..+..+-+.|+.++..+...++...+.+.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544433333333333344444444444444445555555555555555555556666666666666666666666
Q ss_pred Hh
Q 013689 306 VT 307 (438)
Q Consensus 306 l~ 307 (438)
+.
T Consensus 120 lk 121 (151)
T PF11559_consen 120 LK 121 (151)
T ss_pred HH
Confidence 54
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.95 E-value=2.1 Score=40.35 Aligned_cols=68 Identities=25% Similarity=0.412 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 312 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~ 312 (438)
..+...+.++..|+.++..|..++..+...+.+....|..|+.++..|+-.+.++|+...++...|.-
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666777777777777777777777777666666665543
No 39
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.54 E-value=1.6 Score=36.81 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 284 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~ 284 (438)
++.||.+|.+.-....-|.-+++.|.++...|..++..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444444444444444444444333
No 40
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.46 E-value=0.95 Score=38.21 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
-+.=|.-+|+.|+.+|..|..++..+......|..+|..||.+-.....+|..
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888888999999999888887666543
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.97 E-value=4.9 Score=38.62 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---------------VNNRILK 286 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~---------------~EN~~Lr 286 (438)
+....++.+.+-+.-+.+-..-+.++..++.++..|+-|+..|..++..+.+....|. ..|-.|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887888888888888888888888888887777666553 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 287 ADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 287 aqve~Lrakl~maE~~v~R 305 (438)
.++..|...|...+..+..
T Consensus 150 kKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555555544433
No 42
>PRK11637 AmiB activator; Provisional
Probab=91.95 E-value=2.5 Score=44.23 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+............+..+.+++.++..|+.+...+..++..+++++..+..+=..|..++..++.++...++.++
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455666667777777777777777777777777777777777777777777777766655443
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.46 E-value=1.9 Score=39.46 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 287 ADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 287 aqve~Lrakl~maE~~v~R 305 (438)
..++.|.+++.++|+.+.+
T Consensus 73 ~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HhHHHHHhhHHHHHHHHHH
Confidence 3344555555555544444
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.00 E-value=6.1 Score=39.41 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
.+-.+++..-.+.+++.-.-++..+++|+.+|.+++.+.+.++.++..++.+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777777888888887777777777777666543
No 45
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.85 E-value=1.8 Score=39.82 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l 271 (438)
.+|..++..|+.++..|..++..|
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 46
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.75 E-value=2.6 Score=42.14 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
++++..+...|..++..|..+++.++.++..+..||..|......|--++..++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 444444444555555555555555555555666666666554444443443333
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.72 E-value=1.5 Score=47.46 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~-~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
++..|+.+-+.|+.||+.|+++...+.++..... .+..+|..+.+.|..++..++..+..|
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888777776544 677788878777777766665555444
No 48
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.61 E-value=5.6 Score=38.18 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
+.+-.+..|....+-+..+.+.+.+.+.|+.++..-+.++..+..++..+.++...+..
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888888876644444444444444444444433
No 49
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.29 E-value=7.6 Score=33.04 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
-.+|+.+.+.+=|++=..|.-+.....+|+.+++.|....+.|..+|.....++..|+.-|+++...+...
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999888888888888999999999999999999999999988888888888877666554
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.26 E-value=3.9 Score=41.17 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+.||+.+-..|+.||..|+.+...|--+.+++..+=..|++++.+|.....+
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 36778888888888888888888888888888888877888888887766655
No 51
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.09 E-value=5.5 Score=33.82 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=37.7
Q ss_pred HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 013689 229 MLSNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD----------ESAVNNRILKADIETL 292 (438)
Q Consensus 229 ~lsNRESARRSR~RKq------~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~----------~L~~EN~~Lraqve~L 292 (438)
+..|.+.-+.+-.+|. ..+-+|..+...|..+-..|+.+...+..++. .+..+=..|+.++..|
T Consensus 7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 3346666665555553 33344444444444444444444444444443 4444455555555555
Q ss_pred HHHHHHHHHHHHH
Q 013689 293 RAKVKMAEETVKR 305 (438)
Q Consensus 293 rakl~maE~~v~R 305 (438)
..++..+++.+..
T Consensus 87 e~~~~~~e~~l~~ 99 (108)
T PF02403_consen 87 EEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.03 E-value=5.2 Score=45.27 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
-+..+..+|+.|...|+.++....+++..++.|.+.|+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777776666666655543
No 53
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.90 E-value=4.9 Score=35.75 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
-+.+-+..-.|..+-|+..=.+.-++|+..+..|+.++..+.+++.+|+.++..+..
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777666666777777777777777777777777766665544
No 54
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.80 E-value=2.8 Score=42.36 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
-..+...+.+++..+..++.+...|..++..+..+...+..++..+++++..|..++...++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888889999999999999999888888888888888888888888877643
No 55
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=89.73 E-value=2.3 Score=35.90 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
-++|..++..|+..-..|..++..++..+..|..||..|..=|..|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888889999988888889999999988888877
No 56
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=2.7 Score=46.80 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-ccchhhhhc-c
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKVKMAEETVKRVT-GLNPLLLAR-S 317 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L---raqve~Lrakl~maE~~v~Rl~-~ln~~l~~~-~ 317 (438)
=+.+..+|+.++.+|+.++..|..++..+......-.-.++.+ ..++..|+.+|......++.|. .++.+.... .
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l 513 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777778777777777665444444443 3567777777777666666654 334433222 2
Q ss_pred CCCCCCCCC
Q 013689 318 DVPGVGMPL 326 (438)
Q Consensus 318 ~~~~~~~p~ 326 (438)
+.+|-++|+
T Consensus 514 E~sG~g~pv 522 (652)
T COG2433 514 ELSGKGTPV 522 (652)
T ss_pred hhcCCCcce
Confidence 455666666
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.53 E-value=10 Score=36.58 Aligned_cols=12 Identities=8% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013689 286 KADIETLRAKVK 297 (438)
Q Consensus 286 raqve~Lrakl~ 297 (438)
+..+..++.++.
T Consensus 125 ~~~~~~~~~~l~ 136 (302)
T PF10186_consen 125 QNELEERKQRLS 136 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.47 E-value=2.7 Score=42.04 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
=+..++++..++..+..|+..|..+++.++.+|.++...=..|+.+...|..+++.+...+-+|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3456677888888888888888888887777777766666666666655555555555444333
No 59
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.43 E-value=1.9 Score=45.14 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 239 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 239 SR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
-=+|-+.+...||.-+.+++.||+.|..+++.+.+.+.+.+.|+..|..++.+-
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 446777888889999999999999999999999999999999988886555443
No 60
>PRK09039 hypothetical protein; Validated
Probab=89.43 E-value=4.5 Score=41.81 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET-VKRVT 307 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~-v~Rl~ 307 (438)
.+...+|..|+.+...|+.++..++..+..++.+.+..+.+++.|.++|..+-.. ++.|.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677777777777777777777788888888888888888887776433 44443
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.32 E-value=8.9 Score=37.46 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 284 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~ 284 (438)
-++.+..|+.+++.|+.+|..|...+...+++...|..+-..
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444444444444443333
No 62
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.08 E-value=3.1 Score=42.85 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
-+|+.+++++..||..|...|...+.....|..|...|+.+..+...-+..+++.++.+.
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444555555555544444444555555555555554444555555555543
No 63
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.02 E-value=1.7 Score=32.86 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+|......|...|..|..+|..|+.+.+.|+++|..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999988866543
No 64
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=88.77 E-value=6.1 Score=36.30 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccC
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSD 318 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~ 318 (438)
.++.....+......+..+..+|..+......-..+-..|+.+.....+.+...|..+.||...|.-|....+
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 3444555567777778888888888888777778888899999999999999999999999999988877753
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.76 E-value=2.4 Score=38.91 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el--~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
++.+.+|+.++..|+.|...|...+ ..|......|..|+..|..+++.|+
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777776665 3344455555555555555555554
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.71 E-value=35 Score=37.99 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 276 DESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..+..||..|+..|..|+.++.++
T Consensus 434 Eql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 434 EQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666554
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.61 E-value=5.3 Score=35.87 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013689 279 AVNNRILKADIETLR 293 (438)
Q Consensus 279 ~~EN~~Lraqve~Lr 293 (438)
..++.+|++++..|+
T Consensus 95 ~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 95 SEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555565555554
No 68
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=88.36 E-value=0.78 Score=43.36 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|+|+|.+.++--.+|.-|..+|. +-..|..++++||.++..|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999984 45678899999999999998888
No 69
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.31 E-value=3.5 Score=33.70 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 258 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 258 e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+.++..|+.++..+.+++.....+|..|+.+-.....+|.++-..+..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~ 51 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK 51 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333333
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.05 E-value=8.4 Score=43.09 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 230 LSNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 230 lsNRESARRSR~RKq~~leeLE~qV~~Le------------------------~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
+.|.+.--+--..+..+|.+||.++..++ ..|..|+.+|..++..|..|.++|..|
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 33444333333366777777777666544 357788999999999999999998433
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.94 E-value=3.4 Score=40.08 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
||-..|+.|+.-|..|..+...|......++..|..|..++..|+.++++.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444455555555555544444443
No 72
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=87.84 E-value=1.3 Score=34.60 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
|++..|+||+.++..-+ |.. ...-....+.+..|..||+.|++++.-++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888887766433 211 112234556667888999999999887753
No 73
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.81 E-value=2.8 Score=33.82 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
+++.+||.++..++.-...|...+..-+++...|..+-+.|+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777776666655444444433333333
No 74
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.78 E-value=5.6 Score=34.58 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l--~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
|+..++.|+.++......-..|..++..+ .+.++.|..+=..++-++.+|+++++-....+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555566555555544444444444444 44444555555555555555555554444333
No 75
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.36 E-value=3.4 Score=41.98 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 013689 318 DVPGVGMPLV 327 (438)
Q Consensus 318 ~~~~~~~p~~ 327 (438)
+.|-..+|++
T Consensus 188 E~pR~~~Pss 197 (333)
T KOG1853|consen 188 ERPRIVEPSS 197 (333)
T ss_pred cCCCcCCccc
Confidence 5677788876
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.18 E-value=2.3 Score=37.01 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
...|.+++..+++++..+..+|..|+.++..|+..-...|+.+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34445555555555556667777777777777664445555543
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.14 E-value=16 Score=37.49 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQ-------KYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~q-------k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
..+.|++||.+...|..|...|..+...+.+ .++.+..+-..+..+...|..++..+.+.+++|...|
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444444444433 3333333333444555556666666666666766655
No 78
>PRK04406 hypothetical protein; Provisional
Probab=87.06 E-value=5.3 Score=33.07 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.|+.++..|+....-+..-++.|++-...-..+-..|+.++..|..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444444443333333333444544444433
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.05 E-value=12 Score=40.17 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
|+++-+.++=+.-.++....++....|+.+++.|+.++..+..++.........+..++..+...+..|+.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 556666666666666666677777888888888888888887777755555555555555554444444433
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.93 E-value=23 Score=32.76 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
....|++.+-+=-.-+++.+..|+.++..+..+...|..+|.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555544444444444444
No 81
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=86.76 E-value=19 Score=30.75 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 226 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 226 ~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
+.++...++..+..=..|...+..||.++..|..|-..-.+++-.+.+....+..||+.|+.++..=+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 45677777888888889999999999999999999999999999999999999999999987776533
No 82
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=86.71 E-value=2.4 Score=42.61 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.+.+|+.||.+|++++..+++++.. ....|++|.+.||+.|.+.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence 4566778888888887766444333 1222444444455444443
No 83
>PRK02119 hypothetical protein; Provisional
Probab=86.61 E-value=5.5 Score=32.74 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
+++.+||.++..++.-...|...+. .-..+-..|+.++..|..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~-------~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALI-------EQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444433 3333334444444444333
No 84
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.57 E-value=6.1 Score=37.66 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
..+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+.+|...|.....
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888889999999999999888899999999999999988888887755543
No 85
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.55 E-value=5 Score=39.58 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLA 315 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~ 315 (438)
|+++...+..+-..|..+++....++..+..++..|+.|.+.+ .+..+|+.--|+-||.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~-------~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL-------QDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444 4455666555555553
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.44 E-value=5.8 Score=37.56 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
+.+...|+.|+..|..++..|..++..|..+...++.+.++|
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444
No 87
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.22 E-value=10 Score=31.80 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
+-++.||.+|++.-.-..-|.-+++.|.++.+.|..|-..++...++|+++-.
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 34677888887766666666666666666555555555555555555554433
No 88
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.20 E-value=2.9 Score=37.35 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET--LRAK 295 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~--Lrak 295 (438)
..+.+||.++..|-.+...|++.+..+-+....|..||..||..+.. +...
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~ 60 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKT 60 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccch
Confidence 46789999999999999999999999999999999999999999988 5443
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.19 E-value=11 Score=36.75 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.-|..++..|+.||..|..+...++.++..|..+|..|+-++-....
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45777788888888888888888888888888888888777744433
No 90
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.16 E-value=11 Score=30.98 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+=..++.+|..|-..|..+.-.+......|...|..+..++..|..++..++..+..+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666666666666666666665555554444
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.05 E-value=6.4 Score=40.12 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
..|..|..++..+..+...++.++..++.+...+..+-..+.++..+|...+..++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666655443
No 92
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.89 E-value=11 Score=31.08 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
-|-+.+..|..+-..|....-.+...+..|+.+...++.+...|+.+++.+..++..+++..++
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888888888888888888888888888888888888888888888888888777765543
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.85 E-value=14 Score=39.43 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
..|+.++..|+.++..+..++..+..++..+..+-..+.
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 399 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 94
>PRK09039 hypothetical protein; Validated
Probab=85.59 E-value=5.9 Score=40.92 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~ 291 (438)
.|+++...|..+...|.+.+..
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 95
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.35 E-value=13 Score=39.23 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ--------------KYDESAVNNRILKAD 288 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q--------------k~~~L~~EN~~Lraq 288 (438)
.-|+|++.-|-|--|.-|. -+++-+.+.++|+..|++|..+|..++. -...+..||..|+.+
T Consensus 74 q~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777666553 3444555667788888888777765443 344667899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 289 IETLRAKVKMAEETVKRV 306 (438)
Q Consensus 289 ve~Lrakl~maE~~v~Rl 306 (438)
+.+|.+.+...|+....|
T Consensus 150 L~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHhHhHHHHHHH
Confidence 999988886665554433
No 96
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.24 E-value=27 Score=31.18 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 238 RSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
-||.-.+..+..|+..++.++..+..|.++-..|......|..+|..+...+.+|+++|..+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555444
No 97
>PRK04325 hypothetical protein; Provisional
Probab=85.05 E-value=6.2 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
++.+||.++..++.-...|...+.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~ 33 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666655555555444
No 98
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=84.93 E-value=8.6 Score=32.98 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQK------YDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk------~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.+..+|..|..++..|+.+ ......||-.|+.++..|+....
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666654 44678899999999999987654
No 99
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=84.76 E-value=5.5 Score=39.90 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+|.+-.+.....++.....=+.+...+.++...|+.||..||.++++|+..+.-+.+.
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444455556677777788888888888888888777665544
No 100
>PRK00846 hypothetical protein; Provisional
Probab=84.68 E-value=7.4 Score=32.68 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
+|+.++..|+....-...-++.|++.......+-..|+.++..|..||+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444555555555555444433
No 101
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.59 E-value=17 Score=38.63 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------SAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~----------L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+-+|..+..+|..+-..|+.+...+.+++.. +..+-+.|+.++.+|..+++.+++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555444444433 3334444455555555444444443
No 102
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.46 E-value=24 Score=33.87 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+|+.++..|+...-.|+.+...+..+......|...|+..+..|...+..+|-.+..+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555556666777777777777777777766555444
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.36 E-value=10 Score=35.00 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
+++.++..++.....+...+....+++..+......+..++..|+
T Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 106 ELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 104
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.33 E-value=6 Score=40.59 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
.++..+.++...+.+-..|..++..++.+|.....+...|..++.....+|..++..+..|.+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 455666667777777777888888888888888889999999999999999988877766544
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.31 E-value=7.8 Score=34.82 Aligned_cols=7 Identities=71% Similarity=0.881 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013689 290 ETLRAKV 296 (438)
Q Consensus 290 e~Lrakl 296 (438)
++|+..|
T Consensus 99 eEL~~Dv 105 (120)
T PF12325_consen 99 EELRADV 105 (120)
T ss_pred HHHHHHH
Confidence 3333333
No 106
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.06 E-value=7.5 Score=31.85 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
+++.+||.++..++.-...|...+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~ 32 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVT 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555544444
No 107
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.01 E-value=0.054 Score=56.60 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=44.2
Q ss_pred CchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013689 219 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLT 269 (438)
Q Consensus 219 d~~d~KR~RR~lsNRESARR---SR~RKq~~leeLE~qV~~Le-~EN~~L~~el~ 269 (438)
...+.|+..|+++|+.+|.+ +|.||+.+...|+.+|+.|+ .++..|..++.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is 203 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS 203 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence 45689999999999999999 99999999999999999999 77766555444
No 108
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.74 E-value=12 Score=40.40 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
..+.|+.++.+|+.||..|+..+..|...+..|..+-..+-.+++.||-++.-..+.-
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~ 355 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLR 355 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999999999999999999999999888888888887776544433
No 109
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.60 E-value=20 Score=34.18 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
..+|+.++..|+.++..|..++..+..++..+...+..+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888877777666655443
No 110
>PF15294 Leu_zip: Leucine zipper
Probab=83.56 E-value=3.8 Score=41.72 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
|..++..|+.||..|+.++..++.++.....|+..|.+++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777765
No 111
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.54 E-value=6.5 Score=40.64 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
++|..++..|+.+|..|+.++.....++..|..+|+.||+....+.++...-|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEE 75 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEE 75 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777777777777777777777777766666665544
No 112
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.30 E-value=30 Score=33.70 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 227 RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
-++..-.+-..|.-..-++++..|...+..-+.+-.....+-..++++...|..|.+.+++++..|+++|..++..
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667777777777777777777777777777777777788888888888888887777766644
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.26 E-value=12 Score=34.30 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
...+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++..+..++...+........++
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~ 79 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence 345555666666666666665555555555555555555555555555544444444333333333
No 114
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.25 E-value=23 Score=34.54 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H------
Q 013689 222 DDKRARRMLSNRESARRSRRRKQA----HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV----------N------ 281 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~----~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~----------E------ 281 (438)
-.+|.||....+.++=.-+-+=.+ ++...-.+|..|+..|+.|..+...|..-+..|.- |
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGr 100 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGR 100 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhh
Confidence 367778888877777544433222 22233345667777777777777777765554433 2
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689 282 --NRILKADIETLRAKVKMAEETVKRVTGLNPLLLA 315 (438)
Q Consensus 282 --N~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~ 315 (438)
-.+++.++.....||+.+|..-+.|...|.-|.-
T Consensus 101 yta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 101 YTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3467899999999999998887888777765443
No 115
>smart00338 BRLZ basic region leucin zipper.
Probab=83.02 E-value=5 Score=31.42 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+..|..++..|..+|..|+.++..|+..+..+.+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777777777666655443
No 116
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.94 E-value=7.6 Score=31.31 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.|+.++..|+....-+...++.|++-...-..+-..|+.++..|..||+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888877766666666666666666666555443
No 117
>smart00340 HALZ homeobox associated leucin zipper.
Probab=82.90 E-value=2.4 Score=32.14 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
+.|.+-+..|..||++|+.++++||+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778899999999999999974
No 118
>PRK02119 hypothetical protein; Provisional
Probab=82.81 E-value=7.7 Score=31.89 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+..|+.++..|+....-+...++.|+ ..=.....++..|+++|+.+.+.+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN-------~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELN-------QALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666655554332 222223455677777776665443
No 119
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=82.80 E-value=13 Score=34.27 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
++.+-.|.++-..|+..--...+++..++|+ ++|+.+|..|.+|++.|+..+..+....+-+.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666677777777778888877765 57999999999999999988877765555543
No 120
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=82.79 E-value=4.8 Score=42.17 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDES 278 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L 278 (438)
...|+.||..|++++++|+.+...|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 121
>PRK00295 hypothetical protein; Provisional
Probab=82.54 E-value=11 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
+++.+||.++..++.-...|...+..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~ 30 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888777766666665553
No 122
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.53 E-value=6 Score=30.93 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..+..|..++..|..+|..|+.++..|...+..+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666665555444
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.51 E-value=18 Score=38.93 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+++...++--.++...+.+-..+.+.|+.+...|..++..+..++.....++..|++++..+..++..++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 455566666666666667777777777777777777777777777777778888888888887777776644
No 124
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.11 E-value=12 Score=39.01 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 286 KADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 286 raqve~Lrakl~maE~~v~Rl 306 (438)
|++|..|+.+|..++...+.+
T Consensus 193 K~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 193 KAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccch
Confidence 677777877777777654443
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.02 E-value=26 Score=36.04 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH----------
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELET--------------QAGQLRAEHSSLLKGLTDVNQKY---------- 275 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~--------------qV~~Le~EN~~L~~el~~l~qk~---------- 275 (438)
.....|+.-+..+-+--++-|..||-+|+.||. +...|+.||..|....+.+....
T Consensus 14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 334555555555555555555555555555553 44466777777766666655433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 276 ----DESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 276 ----~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.-|+.+....|.+++.|...|+..+....|.
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666665555554
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.97 E-value=11 Score=41.98 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+.+++|+.++..|+.+...+..++..+...+..+..+..+.+.+.++|...++..+.+++.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555554444433
No 127
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.86 E-value=25 Score=38.02 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
=++++.++|..+..|+.||..|..+...
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899999999999988777654
No 128
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.56 E-value=12 Score=38.20 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
..++.+..++..|+.||..+..+.+.....+..+..|+..+..++..|+.++..++.....
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788888888888888888888888888888888888888887776655433
No 129
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.54 E-value=6.3 Score=31.08 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+..++..++.++..+..+|..|+.++..|+.--...|..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444455555555566666666666663333333333
No 130
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.51 E-value=19 Score=38.30 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 013689 232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR----------ILKADIETLRAKVKMAEE 301 (438)
Q Consensus 232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~----------~Lraqve~Lrakl~maE~ 301 (438)
|.+--+++-.+|. +...-.++-.|-.+..+|..+++.|+.+.+.+..+=. .|++++.+|+.+++.+++
T Consensus 10 n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 10 NPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA 87 (425)
T ss_pred CHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444441 2112346677888888888888888888877765432 366666777777777776
Q ss_pred HHHHHh-ccchhhhhccCCCCCCCCC
Q 013689 302 TVKRVT-GLNPLLLARSDVPGVGMPL 326 (438)
Q Consensus 302 ~v~Rl~-~ln~~l~~~~~~~~~~~p~ 326 (438)
..+.+. .++.++..+..++.-..|+
T Consensus 88 ~~~~~~~~~~~~~~~iPN~~~~~vP~ 113 (425)
T PRK05431 88 ELDELEAELEELLLRIPNLPHDSVPV 113 (425)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 666653 3334444333333334444
No 131
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.43 E-value=10 Score=35.19 Aligned_cols=15 Identities=53% Similarity=0.667 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013689 281 NNRILKADIETLRAK 295 (438)
Q Consensus 281 EN~~Lraqve~Lrak 295 (438)
.|..|++++++|+.+
T Consensus 52 d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 52 DNEELKKQIEELQAK 66 (155)
T ss_pred CHHHHHHHHHHHHHH
Confidence 333333333333333
No 132
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.39 E-value=9.1 Score=41.68 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
+.+|+.++..|..+|..|+++++.|+++-.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555555544433
No 133
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.38 E-value=23 Score=35.80 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 286 KADIETLRAKVKMAEETVK 304 (438)
Q Consensus 286 raqve~Lrakl~maE~~v~ 304 (438)
..++..++.++..++..+.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 245 LEELTEAQARLAELRERLN 263 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 134
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.36 E-value=20 Score=42.53 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV-~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
...+.+..+..+.+.+++.+. ..+..+-.++..++..|.++...++..+..|+.+...+..++...+
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444455555555554 4444555555555555555555555666666666666555554443
No 135
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=81.34 E-value=5.4 Score=38.92 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
..--.||..|..+++.+...+..|..||..|+.- ...++.+-++++||++-
T Consensus 121 ~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el----ae~~~~la~~ie~l~~~ 171 (200)
T PF07412_consen 121 EEALEENEKLHKEIEQKDEEIAKLKEENEELKEL----AEHVQYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence 3444588889999998888888888899888864 44445556677787653
No 136
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.26 E-value=28 Score=35.86 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 217 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 217 ~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.+...++|=+|=|++|-.==- -|..=.-+++-|..++..|+.....|.+++......+..+......|+.++..|+..|
T Consensus 85 ~l~evEekyrkAMv~naQLDN-ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDN-EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888999832110 0111123344455555555555555555555444445555555566666666666666
Q ss_pred HHHHHHH
Q 013689 297 KMAEETV 303 (438)
Q Consensus 297 ~maE~~v 303 (438)
...++++
T Consensus 164 ~~rdeli 170 (302)
T PF09738_consen 164 KQRDELI 170 (302)
T ss_pred HHHHHHH
Confidence 5544443
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.14 E-value=24 Score=36.15 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
=.+.+.+|+.+...|+.+-..+......+..++..+..+...|+.++..+..+|..
T Consensus 76 l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 76 LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544444555555555555555555555555555555444443
No 138
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.11 E-value=6.7 Score=38.55 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013689 259 AEHSSLLKG 267 (438)
Q Consensus 259 ~EN~~L~~e 267 (438)
.||..|+++
T Consensus 76 ~en~~L~~e 84 (276)
T PRK13922 76 EENEELKKE 84 (276)
T ss_pred HHHHHHHHH
Confidence 333333333
No 139
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.97 E-value=12 Score=30.10 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.++...+..|..+.++|. .....|+.|.++|..|+.++.
T Consensus 18 eEL~kvk~~n~~~e~kLq-------eaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQ-------EAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555 555566666666666655543
No 140
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=80.94 E-value=15 Score=31.94 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
+.|.+++.+--++...|..|..++..+.++...-.. +-.++.++..+++.++.......-+.+.
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556666666666666655554443333 5667788888888887776655555443
No 141
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.92 E-value=6.2 Score=42.38 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhc
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE-----TVKRVTGLNPLLLAR 316 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~-----~v~Rl~~ln~~l~~~ 316 (438)
....+..|...|+.|-..+..+++..+-.++.|..||..|+.+.-.+++..++... .-+|+..+|.+....
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888888888888888888888888998888776666665555432 234566666664444
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.81 E-value=17 Score=40.41 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
+.+.+.|..-...+.+++..+..|+.|...++.++..+......|..||..|+.++..++.+|.
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455555555566777778888888888888888888888888888888888888888776553
No 143
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=80.67 E-value=16 Score=39.83 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=47.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRAK 295 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L--------~~EN~~Lraqve~Lrak 295 (438)
+..++|.+.-|.-+ |-.+.|+||+.++..-+.|+....-+-..|+.+..++ -.||..+|.+++.||..
T Consensus 242 ehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34455555555443 3346677777777777777665555555555554422 35788888899999988
Q ss_pred HHHHHHH
Q 013689 296 VKMAEET 302 (438)
Q Consensus 296 l~maE~~ 302 (438)
|..||..
T Consensus 318 L~kAEke 324 (575)
T KOG4403|consen 318 LEKAEKE 324 (575)
T ss_pred HHHHHHH
Confidence 8887643
No 144
>PHA03162 hypothetical protein; Provisional
Probab=80.54 E-value=4.9 Score=37.01 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
-+|+.-+++|..++.+|+.||..|++++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999993
No 145
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=12 Score=39.49 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
++.++.|....+.|+.--++|..-.+.|......|+.+-..|+++++-|.+|+.++.+-
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34455555555555555555555555555555566666666666677777776664433
No 146
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.47 E-value=5.6 Score=39.20 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
.+.+.++.++..|.++.+.++..|+.|..||..|+.+++
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555566666666666655543
No 147
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.32 E-value=23 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-SAVNNRILKADIETLRAK 295 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~-L~~EN~~Lraqve~Lrak 295 (438)
...+.+|+.+...|+.+...|..+++.+.++... ...+++..+.++..|++.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444443 233344444444444333
No 148
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.27 E-value=20 Score=37.11 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 233 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 233 RESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
-|+++|=....+.++.+++.....-+........+-+.+.+++..+..||--|++|+.....|....|.+|--+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46888888888888888888777766666677777788888999999999999999999988887766555443
No 149
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.24 E-value=25 Score=40.07 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=4.4
Q ss_pred hhHHHHHHhhh
Q 013689 36 EWELEKFLQEV 46 (438)
Q Consensus 36 EW~FerfLeE~ 46 (438)
|.+|| +|+|+
T Consensus 191 ~~~~~-~l~~~ 200 (697)
T PF09726_consen 191 EFYMQ-LLQQA 200 (697)
T ss_pred HHHHH-HHHHh
Confidence 44442 44443
No 150
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.19 E-value=28 Score=34.85 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+...+..|..++..++.+-..|..++..+...+..+..+=..|+.++..++..+..+++.+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777776667666666666665554433
No 151
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=79.97 E-value=6.4 Score=43.95 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.||..+|.+|..|+.-|+-++...++--..|+..+++|..++..+++++..+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999888888888888888877777777665554
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.89 E-value=10 Score=37.68 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
-+-+|..|++.|+.|...|+-+++.++.++..+....+.|-.++..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999999999999988888888888888888887777764
No 153
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=79.89 E-value=20 Score=35.32 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..+..+..||+.|++++..|+.++..+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666665555555555533
No 154
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=79.83 E-value=23 Score=29.13 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 249 ELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~----~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
++..++..|-.||..|+..|. .+.++|..|..=-..-+.+.+-|..+++.|.+.|.++.-.
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445677788888887765544 4566777777766667777778888888888888877643
No 155
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.76 E-value=12 Score=30.73 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.+++.++..|+....-+..-++.|++-...-..+-..|+.++..|..++
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999988888888887777655555555555555555554333
No 156
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.55 E-value=33 Score=35.00 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
..++.++.++.+.+.+-..+..++.....++..|..+-..|
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433333333
No 157
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.54 E-value=11 Score=43.30 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.||...+..|..++..+..++..++..|..+...+.....++..|.++++.||.+|..++.++.
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888899999999988889999999999999999888877665543
No 158
>PRK00295 hypothetical protein; Provisional
Probab=79.50 E-value=14 Score=29.90 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|+.++..|+....-+...++.|++-...-..+-..|+.++..|..++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888877777776655555555555555555554443
No 159
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.50 E-value=14 Score=41.55 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDV---NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNP 311 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l---~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~ 311 (438)
.++++|+..+..|+.+...+..++..- ..++..+..++..|+.++++=..++.+++....++..++.
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666555422 2344456667777776666666666666655555554443
No 160
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.33 E-value=26 Score=31.26 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKVKMAEETVKRVTGLNPLLLA 315 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L----raqve~Lrakl~maE~~v~Rl~~ln~~l~~ 315 (438)
..+..|+.+...+..++..++.....+....... ..+-..|...+..++..++-|..-|.+|+.
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555555555444443333 334445666666666666667777777653
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.26 E-value=45 Score=33.08 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD-------IETLRAKVKMAEETVKRV 306 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq-------ve~Lrakl~maE~~v~Rl 306 (438)
=.....+|+|++.+.+.|..|-..+..+|..+.+.++.|+..=+.++.+ +..|...+.-+.+.|+++
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445588999999999999999999999988888887776554444444 444444444444444444
No 162
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.25 E-value=22 Score=30.88 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSL--LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L--~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+.+.+++.++..++.+-..| ...+..|+-...++.-+=+.|.+++..+.+++.++
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555 55555555555566666666777777777766654
No 163
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.25 E-value=15 Score=41.37 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..|.+||.+-+.|..|.+++..+++.+++.+.....|=..||-.++.-+..++.+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 67889999999999999999999999998888887887888888877666655443
No 164
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.01 E-value=54 Score=32.47 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
+..++.|+..++.++..++.++..+...|..|..++..|..++..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 334555555555555555555555555566665555555544443
No 165
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.98 E-value=66 Score=31.32 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.+.++.++..|+........+...+...+..|..++..|..++...+.+...+....
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555544444443
No 166
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=78.96 E-value=2.6 Score=42.72 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.++.++|.+|+.|+.-|..|..+|+.-...|..+...-..+|+++-++..|++-+|+.-.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa 276 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQA 276 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 456789999999999999999999888888888877777899999999999887765433
No 167
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.93 E-value=15 Score=34.94 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 013689 239 SRRRKQAHLNELETQAGQLRA------EHSSLLKGLTDVNQKYDESAVNNRILK----ADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 239 SR~RKq~~leeLE~qV~~Le~------EN~~L~~el~~l~qk~~~L~~EN~~Lr----aqve~Lrakl~maE~~v~Rl~ 307 (438)
.-.+.++.+.+|+.++..++. +...|..++..|.+++..|..+-..+. ..++.|+..+..+.+.+.|.|
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555443 233344444444443333333322221 234445555555555555543
No 168
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=78.58 E-value=0.94 Score=47.50 Aligned_cols=43 Identities=35% Similarity=0.544 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 265 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~ 265 (438)
++++|=+.+||.+|-|+|.|||.....|+.+...+..+|..|.
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 4445558999999999999999999999999998888887776
No 169
>PHA03155 hypothetical protein; Provisional
Probab=78.53 E-value=14 Score=33.39 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
.-+++|+.++..|+.||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999999854
No 170
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.53 E-value=37 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCCCCCC
Q 013689 284 ILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPLVN 328 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~p~~~ 328 (438)
.|++++.+|..+++.++...+.+. .++.++..+.+++.-..|++.
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~ 118 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGK 118 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 444444455555444444444332 233334444444444555543
No 171
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.48 E-value=38 Score=36.49 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
..|.+-+..+.+++.++..+-+.|..++++|++++..++.....+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566666666677777777778888888888888887777666654
No 172
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.27 E-value=18 Score=36.80 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.+++.+|+.|..+...+..++..+..++..+..+=..|+.+|.+|+..+...+
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444455555555554444433
No 173
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=78.25 E-value=14 Score=38.06 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+.+-+.+.-++..|+..|.+||.++..|.+.+..+.+.|
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566777777777777777777766665544
No 174
>PRK00736 hypothetical protein; Provisional
Probab=78.13 E-value=15 Score=29.79 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
+++.+||.++..++.-...|...+..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~ 30 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877766666665553
No 175
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=78.00 E-value=24 Score=32.19 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhc
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG-LNPLLLAR 316 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~-ln~~l~~~ 316 (438)
.|-.....|+..-......+..|++.+...+.....-...+..|++.++.++..+++... .+++|+..
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 333444444444445555555666666666666666666666777777776666666443 36666543
No 176
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.91 E-value=15 Score=32.47 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
|-.-+..+..|..+|..-.+.+..+..||..|.=....|..+|..+.+.
T Consensus 21 VieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 21 VIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443333
No 177
>PLN02678 seryl-tRNA synthetase
Probab=77.89 E-value=45 Score=36.08 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCC
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPG 321 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~---~EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~ 321 (438)
.+-+|..+...|..+-..|+.+...+..++..+. .+-..|++++.+|..+++.+++..+.+. .++.++..+..++.
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~ 113 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVH 113 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444444444444444444444444444333211 1112344444444444444444444332 22333444444444
Q ss_pred CCCCCCC
Q 013689 322 VGMPLVN 328 (438)
Q Consensus 322 ~~~p~~~ 328 (438)
-..|+++
T Consensus 114 ~~VP~G~ 120 (448)
T PLN02678 114 DSVPVSN 120 (448)
T ss_pred ccCCCCC
Confidence 4555544
No 178
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.75 E-value=11 Score=37.57 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHhhhhhhhHHH
Q 013689 115 RAYLKTKLDLACAAV 129 (438)
Q Consensus 115 ~a~Lk~kL~~~cAAv 129 (438)
+.-|..||+.|++.|
T Consensus 18 ~~~L~~kLE~DL~~~ 32 (248)
T PF08172_consen 18 QKELNAKLENDLAKV 32 (248)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999997
No 179
>PRK04325 hypothetical protein; Provisional
Probab=77.69 E-value=15 Score=30.32 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
+...++.++..|+....-+...++.|++-...-..+-..|+.++..|..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999998888888887777665544444444555554444333
No 180
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.37 E-value=39 Score=30.14 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013689 248 NELETQ 253 (438)
Q Consensus 248 eeLE~q 253 (438)
+||+.+
T Consensus 31 ~dl~~q 36 (132)
T PF07926_consen 31 EDLESQ 36 (132)
T ss_pred HHHHHH
Confidence 333333
No 181
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.30 E-value=43 Score=33.21 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
.....+...|..++..+......|..+......+...|+.+|..+..
T Consensus 71 ~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 71 EMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666666667666666654
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=77.15 E-value=13 Score=30.09 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 259 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.+...+..++..++++...+..||..|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566666677777777778888888888887754
No 183
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.03 E-value=23 Score=36.90 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
..|..-+.+.+.+|..|..++..|++++.++.-++..||.++..+|
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 3455555666666666666666666666666666666666655543
No 184
>PLN02320 seryl-tRNA synthetase
Probab=76.82 E-value=41 Score=37.05 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCC
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPG 321 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~--~EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~ 321 (438)
..+.+|..+...+..+-..|+.+...+.+++.... .+-..|++++..|+.+++.+|+..+.+. .++.++..+..++.
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h 172 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTH 172 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34444444545555555555555555444443211 1234566666666666666665555543 23444544455444
Q ss_pred CCCCCCC
Q 013689 322 VGMPLVN 328 (438)
Q Consensus 322 ~~~p~~~ 328 (438)
-..|.+.
T Consensus 173 ~~VP~G~ 179 (502)
T PLN02320 173 PDVPVGG 179 (502)
T ss_pred ccCCCCC
Confidence 4555543
No 185
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=76.81 E-value=51 Score=29.13 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 259 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
.....|..++....+++..|..+|..|++++..|+....+.++...+-.+
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~ 99 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELG 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhC
Confidence 34445555666667777788888888888888888776666666544433
No 186
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=76.77 E-value=7.4 Score=34.98 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
.+.|..-|+.++.+|.++...|+.||..||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777777788888888874
No 187
>PRK00736 hypothetical protein; Provisional
Probab=76.75 E-value=17 Score=29.44 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
.++.++..|+.....+..-++.|+.-...-..+-..|+.++..|..|
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888887777777766654444444444445444444333
No 188
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.48 E-value=32 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
...|..++..+...+..++.|...||++...|+..|+.+..
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33445555556666667777777777777777777777663
No 189
>PRK04406 hypothetical protein; Provisional
Probab=76.39 E-value=16 Score=30.27 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
++.+||.++..++.-...|...+..-++++..|..+=+.|+.++..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555554555444444
No 190
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.37 E-value=23 Score=35.06 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-------NNRILKADIETLRAKVK 297 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~-------EN~~Lraqve~Lrakl~ 297 (438)
|++.+..-=.-|+..-.+.......|+.+...++.+-..|..+...+.+....|.. ++..|.+++..+..++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555666677788888877777777777666666655555544 44444555555555555
Q ss_pred HHHHHHHH
Q 013689 298 MAEETVKR 305 (438)
Q Consensus 298 maE~~v~R 305 (438)
.+++.+.+
T Consensus 93 ~l~ee~~~ 100 (246)
T PF00769_consen 93 RLEEESER 100 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 191
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=76.07 E-value=21 Score=29.24 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.|..+++.|+..|..|...++...++...+......-.+...+||-+++-.+..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~ 55 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERC 55 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 477789999999999999999999999999999888888888887777665543
No 192
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.98 E-value=37 Score=40.38 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.+-.+-.|-.+.||+--..--+++-..++++..+.-.|+.++..|..+++.|.+++..+...+..|+-.-..|...+..+
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788899999998888888888999999999999999999999999988888887777766654444444444333
Q ss_pred H
Q 013689 300 E 300 (438)
Q Consensus 300 E 300 (438)
+
T Consensus 449 ~ 449 (1195)
T KOG4643|consen 449 L 449 (1195)
T ss_pred H
Confidence 3
No 193
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.92 E-value=14 Score=38.31 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQ---AHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 238 RSR~RKq---~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
.+|.+.+ .++++|..++..++.++..|+.++...+-
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 3444443 34556667777778888888877776543
No 194
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.87 E-value=3.5 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
|...|+.+|.+|..+...|+.||..||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555566666666664
No 195
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.85 E-value=19 Score=38.78 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCC
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV----NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDV 319 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~----EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~ 319 (438)
..+-+|+.+...|..+-+.|+.+...+.+++..... +-..|++++..|..+++.++...+.+. -++.++....++
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 344455555555555555555555555555542222 124577777777777777766655543 455667666676
Q ss_pred CCCCCCCC
Q 013689 320 PGVGMPLV 327 (438)
Q Consensus 320 ~~~~~p~~ 327 (438)
+.-..|.+
T Consensus 109 ~~~~VPvg 116 (429)
T COG0172 109 PHESVPVG 116 (429)
T ss_pred CccccCcC
Confidence 66666665
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.85 E-value=16 Score=34.13 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~-qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
+|+.....++....+|+.++..+. ..+..+..++..|+.+++.|+.+|+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555554433 2344555555555555555555443
No 197
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.66 E-value=59 Score=33.21 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=6.6
Q ss_pred HHHHHHhhh
Q 013689 38 ELEKFLQEV 46 (438)
Q Consensus 38 ~FerfLeE~ 46 (438)
.++.||++.
T Consensus 15 sL~~FL~~~ 23 (325)
T PF08317_consen 15 SLQDFLNMT 23 (325)
T ss_pred CHHHHHHHh
Confidence 377888885
No 198
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=75.57 E-value=31 Score=28.51 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.|+.--+...++....+..|..+...=..-+.+...|+++|..+...|.++
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555554444444444555555555544444443
No 199
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.51 E-value=44 Score=41.29 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQA-------------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~-------------~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
++++.+.+.++.|++-+.-+++ .+++|+.++...+.+...+..++..+..++..+..+-..|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665544332 223333333333344444444444444444444444444444443
Q ss_pred HHHHHHH
Q 013689 291 TLRAKVK 297 (438)
Q Consensus 291 ~Lrakl~ 297 (438)
++...+.
T Consensus 401 elqqel~ 407 (1486)
T PRK04863 401 DYQQALD 407 (1486)
T ss_pred HHHHHHH
Confidence 3333333
No 200
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.28 E-value=25 Score=36.65 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAE-----------HSSLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~E-----------N~~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
..++.|+++++|...-..=+||..++.-=+..+.+|+.= ......++..|+.++.+|..+=..|..+++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566888999887777777755554444556665530 111124555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 291 TLRAKVKMAEETVKRV 306 (438)
Q Consensus 291 ~Lrakl~maE~~v~Rl 306 (438)
-+..+|+.|.+-.+-|
T Consensus 200 ~~~k~L~faqekn~Ll 215 (323)
T PF08537_consen 200 ITKKDLKFAQEKNALL 215 (323)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5655665555444433
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.09 E-value=46 Score=36.38 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.-.+|..++..++.+...+..+|..|++....++.+++..++.-++.
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666667778888777777777777776665554
No 202
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=75.00 E-value=75 Score=32.37 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~le-eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+|.|-.-|.+-.+.---++..|-|.-.- +|+.-.++-..-..+|..+++.|+++.++..-.-.=||+++..|-+|+...
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Confidence 3455555777888888888888777665 677766666666677888888888888888888888888888888888776
Q ss_pred HHHHHHH
Q 013689 300 EETVKRV 306 (438)
Q Consensus 300 E~~v~Rl 306 (438)
...+.++
T Consensus 92 n~Li~~l 98 (277)
T PF15030_consen 92 NRLITHL 98 (277)
T ss_pred HHHHHHH
Confidence 6665554
No 203
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=74.99 E-value=12 Score=32.53 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
.++++.+++.+++.|+.+|..|..++..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555555555555444433
No 204
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.98 E-value=12 Score=37.36 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
+..|||.++..+..+...|+.++.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555555555544443
No 205
>PLN02678 seryl-tRNA synthetase
Probab=74.86 E-value=46 Score=36.02 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~---qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..+|..+++.|+.+-..+.+++..+. +....+..+=+.|++++..|..++..+++.+..+
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776533 3445677788889999999999999988777664
No 206
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=74.68 E-value=15 Score=39.16 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
++|.--|.|-.+.-...|.+++.+..|...|+.+++....+...+..||..||.-+..|.+-.++.
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 556666777777667777788888888888988888888887788888888887777777666654
No 207
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.64 E-value=22 Score=37.69 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+.+..+...-..|++++.+|..++..+++.+.+.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555666667777777766666666555
No 208
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.59 E-value=35 Score=32.92 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.-|++-++.||.+|.+.+.-.......|...+.-......-....+.++..|+..|+.+...+..+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA 128 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999888888888887777777666666666777777777776666555444
No 209
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.53 E-value=19 Score=28.64 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~ 297 (438)
.+..||..|+..++.|..-++
T Consensus 18 tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 210
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.19 E-value=47 Score=39.56 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+++++..++..|+...+.+..++..+.+.+..+..+-..++.++..++.++..++..
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555555555555555555555555443
No 211
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.99 E-value=20 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
+.++.+.+|+.+++.|+.+|..|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677777777777777776666655
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.94 E-value=19 Score=35.92 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
|.+++..|..|.+.||-+++++..+|..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444445555555555444444
No 213
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.74 E-value=76 Score=29.39 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
+...+..+..|+..|...++.++.++..++
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444333
No 214
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=73.70 E-value=35 Score=28.91 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 243 Kq~~leeLE~q-V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
....++.++.+ ...|..+...|...|..|..++.....||..|+.+-+-|..-
T Consensus 6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555533 567777777777777777777777777888777777777544
No 215
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.69 E-value=15 Score=40.02 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+..|.+-+.+.++|+.+...|+.+++.+.++ +..+.++|++|...++.+++.+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776665544444 4444444555555555544444
No 216
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=73.39 E-value=5 Score=36.24 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
|..-+++|..++..|+.||..|++++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999987544
No 217
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=72.93 E-value=14 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
-+.=.|.|+..|+.+|..|+.+++.|. ....+|..+-.++..|..+|-.+++...
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~ 95 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAARSLQE 95 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--SHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445567889999999999999988766 5678999999999998877766654333
No 218
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.89 E-value=61 Score=38.77 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 238 RSR~RKq~~leeLE~qV~~Le~EN-~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+=++++..++.|+.+|..++.+- ..|..++..+..++..|..|+..|..++..|+.++....+.....
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567788888888888766 888888888888999999999999989999988888877666554
No 219
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.84 E-value=43 Score=40.41 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689 236 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLA 315 (438)
Q Consensus 236 ARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~ 315 (438)
++-+=.+...++++....+..++.+...+..++......+..+..+-+.|+.++..||+++..+.+......+.|.+|.+
T Consensus 526 lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a 605 (1293)
T KOG0996|consen 526 LKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA 605 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33333344444444445555555555555566666666666667777777777778888887777766677777777766
Q ss_pred cc------CCCCCCCCCCC-CCCccCcCCC
Q 013689 316 RS------DVPGVGMPLVN-VPLDASRNAT 338 (438)
Q Consensus 316 ~~------~~~~~~~p~~~-~~~~~s~~~~ 338 (438)
.. .++|+---+++ +.-|..-|+|
T Consensus 606 l~r~kesG~i~Gf~GRLGDLg~Id~kYDvA 635 (1293)
T KOG0996|consen 606 LMRLKESGRIPGFYGRLGDLGAIDEKYDVA 635 (1293)
T ss_pred HHHHHHcCCCCccccccccccccchHHHHH
Confidence 64 35555333333 3344443433
No 220
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=72.77 E-value=2.2 Score=36.92 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
.||+.|...+..|..+|..|..++..|+.++..+...+..|+..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 57888888888888888888888887776666655555544433
No 221
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.63 E-value=51 Score=31.80 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.+++..|+.++..++.....|..++..|++++..+...-..|.+++...+++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777777777777777777666666666666655555433
No 222
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.51 E-value=1.1e+02 Score=31.46 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..+.+=+.++.++.+.+.+|..++
T Consensus 218 ~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 218 QKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.34 E-value=50 Score=26.64 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
.++.++...+..|..|..++..|..
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544333
No 224
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=72.30 E-value=31 Score=37.34 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAG--------------QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 242 RKq~~leeLE~qV~--------------~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
=|.+|-++|+.+++ +...+.+.+..+|+.|.++|...--||..|-..+++-|.-|....
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQ 462 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQ 462 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887765 333466678888888888888877777777766666555554443
No 225
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=72.12 E-value=4.3 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
|-..|+.|..++..++.+...|..||-.||.+
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ------------------HHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455444443
No 226
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=71.66 E-value=88 Score=29.52 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------------------HHH
Q 013689 229 MLSNRESARRSRRRKQAHLNELETQAGQL-------RAEHSSLLKGLTDVNQKYD----------------------ESA 279 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~leeLE~qV~~L-------e~EN~~L~~el~~l~qk~~----------------------~L~ 279 (438)
+..=.|+||.-..+-+..|+++..+|... +......+.+|..+.+.|. .+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888888888888888766644 4444444555554444332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 280 VNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 280 ~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
.+-..|+.+-..|+.+|+.+++++.|...
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666433
No 227
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.43 E-value=36 Score=40.43 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHhHHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRR----KQA------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 228 R~lsNRESARRSR~R----Kq~------~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
-+|+++..|.|.+.- +.. ..+....++++|+.|...+..+|..+++.|......|+.|+.+
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~ 484 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEE 484 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677777665321 011 2334445555566666666666666665555433333333333
No 228
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.30 E-value=48 Score=35.07 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDV------------NQKYDESAVNNR-ILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l------------~qk~~~L~~EN~-~Lraqve~Lrakl~maE~~v~R 305 (438)
+.+|+.++..|+.+...+..++..+ +.++..+..+.. .+..++.++++++..++..+..
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555443 334444443333 4555566666666555554443
No 229
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=70.89 E-value=24 Score=37.12 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+|++.|+.++..|+.+...|..+++... .....-..|..+++.+..++..+++.++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544333 3334445567777777777777766544
No 230
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.88 E-value=35 Score=35.36 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
.+.|...|..++.++++++..+..||..|...+..
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455667777777777777777777777655443
No 231
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.70 E-value=29 Score=37.91 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 229 MLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~----leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
..+|-++++.+=.||.++ +++++.+.+.++.+|..|.+.......++.. .+.+++..+.++..++..+++++.
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~---~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE---LEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555443 3344555555555555555555444443332 233344444444444444444444
Q ss_pred HH
Q 013689 305 RV 306 (438)
Q Consensus 305 Rl 306 (438)
-|
T Consensus 446 Dl 447 (493)
T KOG0804|consen 446 DL 447 (493)
T ss_pred hH
Confidence 33
No 232
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=70.63 E-value=51 Score=27.19 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
-.++.+..++..|...-..|...+..+..++..+..
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888777788777777777665554
No 233
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=70.55 E-value=56 Score=35.25 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~L--e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
|.+.++.+-.+.-=.-=.-.|+|=.+.+.|-...|+.| +.|.+.|...+..+++.|.+|..-|+.|..+... +..
T Consensus 303 P~~~~el~~~l~~V~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~---R~~ 379 (431)
T PF14782_consen 303 PDEMEELREILEKVDELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKI---RCN 379 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 66788888777666666677888888888888877754 7899999999999999999999999999876544 455
Q ss_pred HHHHHHHHHhccchhhhhccC
Q 013689 298 MAEETVKRVTGLNPLLLARSD 318 (438)
Q Consensus 298 maE~~v~Rl~~ln~~l~~~~~ 318 (438)
--++.++.|..+|.++|..+.
T Consensus 380 N~~~l~~~lk~vn~~iq~a~~ 400 (431)
T PF14782_consen 380 NHEELLSSLKEVNQIIQKASR 400 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 566777888888888887654
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.48 E-value=83 Score=31.18 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.+++.--.+-+..+..|+.++..|+..|..|..++..+...+.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 3444444455666788888888888888888888887776555
No 235
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=70.37 E-value=33 Score=31.11 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 237 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 237 RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.|-|.=-...+.+|+.+|..|..|--.=.++++.+-.+.+.|..+|+.|+.-+..|..+|..
T Consensus 6 ~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 6 NKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444567777778887777776666677777667777777777777777777666654
No 236
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.16 E-value=51 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 280 ~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.++..++.++++|..+|+.++..++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 237
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=70.14 E-value=46 Score=30.21 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
.-|+.+=..++.+-..-.-+-..++.++..|+-|++.++.-...|.++++|+|-.++....-
T Consensus 7 ~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 7 HFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444555556666778888888888888888999998877776543
No 238
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=70.12 E-value=20 Score=30.71 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
|...-.||-.|+.++..++.-| ..-+-..|-+++..|+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 4456678888888887777655 455677777888887754
No 239
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=70.03 E-value=47 Score=33.09 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 233 RESARRSRRRKQAHLN----ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 233 RESARRSR~RKq~~le----eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
-+|+--.-+||.-+.+ .++.+++.|+.++..|..++..+..++...+.-|.++++-.+. ...+.+.+|..
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEk------k~~eei~fLk~ 242 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEK------KMKEEIEFLKE 242 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHH
Confidence 4677778888875554 5778899999999999999999998888877777777654333 23445667777
Q ss_pred cchhhhh
Q 013689 309 LNPLLLA 315 (438)
Q Consensus 309 ln~~l~~ 315 (438)
.|+.|.+
T Consensus 243 tN~qLKa 249 (259)
T KOG4001|consen 243 TNRQLKA 249 (259)
T ss_pred HHHHHHH
Confidence 7776654
No 240
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=69.72 E-value=35 Score=33.13 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
+-.||.+|..|+..-..+...+. +-...|..|+.++..|..+|+.++.-++++..+
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~-------~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELE-------AQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555443333333322 333567778888888888888888777776543
No 241
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=69.70 E-value=39 Score=37.39 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..+--|.+|+- |--..+.+|--+.+.+.+..+...+.+...|--++...+.+...+..+|+.++++.+.|+.+++..
T Consensus 27 e~ef~rl~k~f---ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 27 EDEFIRLRKDF---EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444555543 334445555566677777788888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 013689 300 EETVKRVTG 308 (438)
Q Consensus 300 E~~v~Rl~~ 308 (438)
.++++--..
T Consensus 104 ~d~l~~~~~ 112 (604)
T KOG3564|consen 104 KDMLKCDIS 112 (604)
T ss_pred HHHHhcccc
Confidence 888765433
No 242
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.60 E-value=93 Score=32.10 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
++..|..++..+..++...+.++..+++++..+...=..++++..+++..+..++..+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666665443
No 243
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.35 E-value=61 Score=37.86 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013689 283 RILKADIETLRAKVK 297 (438)
Q Consensus 283 ~~Lraqve~Lrakl~ 297 (438)
..|..++++|.-|++
T Consensus 440 ~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 244
>PRK10698 phage shock protein PspA; Provisional
Probab=69.35 E-value=64 Score=31.50 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+..|+.++...+..-..|..++..|+.++..+...-..|.++...-+++.++
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666555555554444
No 245
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.28 E-value=28 Score=35.88 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
-+|..|+.+...|...+..+++.|.....+=..+|.....|+.++..+.+.++.
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444445566666666666666665544
No 246
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=69.21 E-value=16 Score=31.94 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el-~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+.....++..+.+++.|...|...| +..+........+...+..+...|+.+++..+..++.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666677777777766666 5555555555555555666666666666555544443
No 247
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.20 E-value=40 Score=34.74 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.9
Q ss_pred HHHHHhh
Q 013689 39 LEKFLQE 45 (438)
Q Consensus 39 FerfLeE 45 (438)
++.||..
T Consensus 12 L~dFL~~ 18 (312)
T smart00787 12 LQDFLNM 18 (312)
T ss_pred HHHHHHH
Confidence 4555555
No 248
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.13 E-value=70 Score=30.84 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=21.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 235 SARRSRRRK-QAHLNELETQAGQLRAEHSSLLK 266 (438)
Q Consensus 235 SARRSR~RK-q~~leeLE~qV~~Le~EN~~L~~ 266 (438)
|||.-+.+. +..+.+|..++..|..||..|..
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665554 34677777777888888877644
No 249
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.09 E-value=14 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
+..+..+.+.+..|..+|..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556667777788888888888887754
No 250
>PRK00846 hypothetical protein; Provisional
Probab=69.01 E-value=33 Score=28.89 Aligned_cols=11 Identities=0% Similarity=-0.173 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013689 287 ADIETLRAKVK 297 (438)
Q Consensus 287 aqve~Lrakl~ 297 (438)
.++..|+.+++
T Consensus 41 ~~I~~L~~ql~ 51 (77)
T PRK00846 41 LTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 251
>PF15058 Speriolin_N: Speriolin N terminus
Probab=68.98 E-value=11 Score=36.73 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
.+.|..|++.|-.||++|++++. |..||.+||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 35667778888888888887775 45577777643
No 252
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.85 E-value=73 Score=38.08 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.|+.|...|..++....+++..+..+-..|+.++..|++++..++..++-
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 44445555555555555555555556666666666666666555544433
No 253
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.83 E-value=87 Score=28.02 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
-+..|+.-|.+.=.+ +.+++++..++..+-.+-..|..++..+.+++..+ ..+-...+=...|+..+..+++.-..+
T Consensus 39 l~~~n~~lAe~nL~~-~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 39 LLAENEELAEQNLSL-EPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777655333 46777777777777777777777777777777777 666666666666777777777665555
No 254
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=68.69 E-value=51 Score=31.00 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~ 272 (438)
..++.++..|..++..|+
T Consensus 85 d~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555544444333
No 255
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=68.57 E-value=43 Score=32.02 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
.++++....|..|...+..++..+..
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 256
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.53 E-value=1.3e+02 Score=30.38 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 013689 322 VGMPLVN 328 (438)
Q Consensus 322 ~~~p~~~ 328 (438)
+..|+.|
T Consensus 274 i~AP~dG 280 (423)
T TIGR01843 274 IRSPVDG 280 (423)
T ss_pred EECCCCc
Confidence 4556655
No 257
>PHA02562 46 endonuclease subunit; Provisional
Probab=68.19 E-value=93 Score=33.19 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
+...+..+.+|+.++..++.....+..++..++.+...|..
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444443333333333333333333333333
No 258
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=68.01 E-value=23 Score=31.54 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
.||-.|+.-...|.+++..+.+....|..||.+|-+=++.|
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34555555555566666666666667777777777766665
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.98 E-value=20 Score=36.87 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSS 263 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~ 263 (438)
.++..|.+|+.++..|+.+...
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 260
>PRK14127 cell division protein GpsB; Provisional
Probab=67.80 E-value=14 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+.+.|..+..||..|+.++..|+.+|...+..+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345556666666666666666666666555443
No 261
>PLN02939 transferase, transferring glycosyl groups
Probab=67.78 E-value=52 Score=39.07 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
|.+.+..|..||..||.+++.|.+++....++-+++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVF 260 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4667888899999999999999999988777766653
No 262
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.69 E-value=78 Score=28.87 Aligned_cols=34 Identities=6% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 278 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L 278 (438)
++++.|..++++...-...+..++..++.....+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444444444444444444333333
No 263
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.55 E-value=59 Score=28.06 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSS----LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~----L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.++....+..|+-.-+- +...|.+--.+...+-.+|.. -..+...-.........+=..|+.++..|+..+..
T Consensus 23 ~~~~~~~~~~~e~~L~~---~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 23 IERREEQLKQREEELEK---KEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443332 233344444455544444443 23333334444555666667778888888888888
Q ss_pred HHHHHHHHhccchhhhhc
Q 013689 299 AEETVKRVTGLNPLLLAR 316 (438)
Q Consensus 299 aE~~v~Rl~~ln~~l~~~ 316 (438)
.++.+....--..+|..+
T Consensus 100 ~e~~l~~~~~Y~~fL~~v 117 (126)
T PF13863_consen 100 LEEKLEEYKKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 887777765444445444
No 264
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.52 E-value=90 Score=37.36 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHS--------------SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~--------------~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+...+++|+.++..++.+.. .|..++..++.++..-..+=..++.++.++++.|++.+..++.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443 3444444444444444444445566666666666665555444
No 265
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=67.47 E-value=72 Score=30.27 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRR-----RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~-----RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
.+.-|.|+-++.+.-++++|. |=....++||.-+.-.+.|...++++|..+++++.-
T Consensus 41 eeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 41 EEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhH
Confidence 345566677888888888874 223334556665556666777777776666555443
No 266
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=67.25 E-value=36 Score=36.17 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQK----YDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk----~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+|..+++.|+.|-..+.+++..+... ...+..+-+.|++++.+|.++++.+++.+..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666553222 45677788899999999999998888766553
No 267
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=67.24 E-value=26 Score=30.24 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHS-SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~-~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
.|-..=|.+|..|+.-.. ....++. .|..+|..|..+++.|+.+|.....
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~-------~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVD-------ELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777764322 2344444 4444555555555555555444433
No 268
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.22 E-value=51 Score=31.78 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 013689 246 HLNELETQAGQL 257 (438)
Q Consensus 246 ~leeLE~qV~~L 257 (438)
++..+..++..|
T Consensus 97 el~k~~~~l~~L 108 (194)
T PF15619_consen 97 ELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 269
>PRK03918 chromosome segregation protein; Provisional
Probab=67.13 E-value=1.1e+02 Score=34.61 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCC
Q 013689 417 PGAVPGWDTGLPH 429 (438)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (438)
|+.-|.|...|.+
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 4444446665554
No 270
>PLN03188 kinesin-12 family protein; Provisional
Probab=66.94 E-value=36 Score=41.25 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRA-----------EHSSLLKGLTDV------------------------NQKYDESAVNNRILKAD 288 (438)
Q Consensus 244 q~~leeLE~qV~~Le~-----------EN~~L~~el~~l------------------------~qk~~~L~~EN~~Lraq 288 (438)
.+.+.-|..++..|+. ||..|+.||.+. ++++..++.||..|+.+
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555555554 499888887663 34666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccch
Q 013689 289 IETLRAKVKMAEETVKRVTGLNP 311 (438)
Q Consensus 289 ve~Lrakl~maE~~v~Rl~~ln~ 311 (438)
++.|++|-.|--.+++.....++
T Consensus 1234 ~~klkrkh~~e~~t~~q~~aes~ 1256 (1320)
T PLN03188 1234 IDKLKRKHENEISTLNQLVAESR 1256 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999887664445554333333
No 271
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=66.88 E-value=57 Score=28.38 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLA 315 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~ 315 (438)
.+|+.++..++.++-.|..+...+-.....+..+...-+. -.+++.+++.++..++.-.....+++.
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~ 79 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKN 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333333222 223344444444444444444444443
No 272
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=66.68 E-value=44 Score=36.56 Aligned_cols=61 Identities=31% Similarity=0.385 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRA-----------EHSSLLKGLTDVN------------------------QKYDESAVNNRILKAD 288 (438)
Q Consensus 244 q~~leeLE~qV~~Le~-----------EN~~L~~el~~l~------------------------qk~~~L~~EN~~Lraq 288 (438)
...+..|-.+++.|+. ||..|+.+|.+.- +++..++.||..|+.+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555 8988888887643 3556678899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 289 IETLRAKVKMAEETVK 304 (438)
Q Consensus 289 ve~Lrakl~maE~~v~ 304 (438)
++.|.+|-++--.+++
T Consensus 464 iekLK~kh~~Ei~t~k 479 (488)
T PF06548_consen 464 IEKLKRKHKMEISTMK 479 (488)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888766444433
No 273
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=66.51 E-value=88 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+.+...+.+.+..|..|...+..-++-.......+..|+.+.++.+++++-
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~ 85 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777788888877777766666677777777777776665544
No 274
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=66.38 E-value=41 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVN--NRIL---KADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~E--N~~L---raqve~Lrakl~maE~~v~Rl~~l 309 (438)
.+.|+.+-+.|..++..|++....+..+ .-.| |.++++|.++|+.+|+.++++...
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444433321 1222 678888888888888888886543
No 275
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=65.97 E-value=83 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..-|+.|-..|..+++.=..+...++.|++.+..++.+=+.|++.
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~ 180 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKS 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888999999999888888888999988888777776666554
No 276
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.81 E-value=75 Score=38.41 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccchhhh
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK----ADIETLRAKVKMAEETVKRVTGLNPLLL 314 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr----aqve~Lrakl~maE~~v~Rl~~ln~~l~ 314 (438)
++|..++..+..+...+..++..+......+..+...|+ +....++.++......++.+..+|.-++
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444443332 2333444444445555555555554433
No 277
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=52 Score=38.41 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
....+-..=+--+++-...++.|.+++..|+.||+.|..+++.....+..+..++..||.|+.
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444555556666666677777777777777777666666666666666666655
No 278
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=65.72 E-value=10 Score=30.52 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLK 266 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~ 266 (438)
.++.+|+.++.+|+.||.-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555543
No 279
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.71 E-value=79 Score=30.73 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.+..||..|+.+|..+.+.+..|...+..|..+-..|+.
T Consensus 160 ~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 160 SIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555444443
No 280
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.57 E-value=9.2 Score=40.21 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.+.-.|..+-..|+.||+.|+.+++.|+....
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888899999999999999998865444
No 281
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=65.57 E-value=55 Score=37.01 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 284 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~ 284 (438)
.+.++.|+.++.++..-+.+......++.+++.+-.-|.+-+..
T Consensus 96 ~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~ 139 (632)
T PF14817_consen 96 QELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQ 139 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555444444433333
No 282
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.51 E-value=32 Score=33.37 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTD------------------VNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~------------------l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
|...|+..+..|+.+...+++++.. |.++...+...|-.|...+..|++++..+
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444 33344444555555555555555444443
No 283
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.24 E-value=31 Score=38.65 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..+++|..++..++.+...|..++..+.+.......++..|.+++.-..+-+.+
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666666555533333333
No 284
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=65.14 E-value=22 Score=39.49 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
.=.+.||.+|+.+=.+.+.|+...+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~ 387 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQ 387 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677666655554444443333
No 285
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=64.98 E-value=71 Score=36.35 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..++..+...+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777777777777777777777776666666665554433
No 286
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.76 E-value=1.1e+02 Score=31.25 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..-+-+...+|..+.+++...++....+..+...|+++++.|+.....
T Consensus 178 ~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 178 QPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334556668999999999999999999999999999999999877653
No 287
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.46 E-value=47 Score=38.15 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccc
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM---AEETVKRVTGLN 310 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m---aE~~v~Rl~~ln 310 (438)
..+.||.+...|+.|...++.+-..+-+.|.+|+.||=.|..+|..|+.---. +.-.++|+.-..
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35777778888888888888888888899999999999999999999865433 334566776544
No 288
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.41 E-value=23 Score=29.98 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADI 289 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqv 289 (438)
.|..++..+..+-..+..+|..|+.++
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445555555554443
No 289
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=64.41 E-value=35 Score=31.77 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~q--------k~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
+-++.|+.+++.|+.+...+.+++..... .|+....+-..|..++..|..+|..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667788888887777777666644443 3555555555555566666555543
No 290
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.30 E-value=96 Score=27.54 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689 259 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 312 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~ 312 (438)
.|.+.|+.++..|.+-...-...|..|+.++..-.+.|.-++..++.|++.|.-
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~Q 58 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQ 58 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555666666666666666666666667777666644
No 291
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=64.22 E-value=56 Score=33.32 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
++.....++....+.||.+...|+.+++.+.+.+.++..-
T Consensus 199 ~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 199 DEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445566667777888888888888887777666443
No 292
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.00 E-value=84 Score=34.99 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q 013689 39 LEKFLQEV 46 (438)
Q Consensus 39 FerfLeE~ 46 (438)
|++||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 45555543
No 293
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.97 E-value=1.2e+02 Score=27.73 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=38.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~-------qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
++.+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+..++..+ +..++.++..+.
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~ 183 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3344555556666666666666666642 56666666666666666666555544 334555555543
No 294
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=63.81 E-value=72 Score=34.23 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
.-+..|+.|...|.++|+.-.++....+.+...|..++++
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888887777776666666666555544
No 295
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.47 E-value=79 Score=30.69 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
..|..+-..+..+..++...+..|++++..|+++....++
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666777777777777777777777655543
No 296
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.44 E-value=1.4e+02 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
..++.|..++..++.+...|..++..+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 297
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=63.39 E-value=1.4e+02 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 258 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 258 e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+.+-..|.+++..|..++.....+|..|-.-+.....+|..+|..+.++
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~ 134 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERL 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777777777777555455555555555555554
No 298
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.38 E-value=50 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 258 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 258 e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
+.++..+..+++.+.++....+.|...||.|.+.|.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777777777777777777777777777654
No 299
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.30 E-value=22 Score=29.66 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
...+...+..++..++++...+..||..|+.++..|.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445667777788888888889999999998888874
No 300
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=63.29 E-value=12 Score=31.98 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
|+.+++.|..+++.++.+|..|..+|...+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777776544
No 301
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=63.28 E-value=66 Score=33.57 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 292 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~--EN~~Lraqve~L 292 (438)
+++..+..|+.+...+..++..+++++..+.. .+.-+.++++.|
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 33444455555555555555555555555543 333345555554
No 302
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.92 E-value=50 Score=36.75 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
+.|..+..+..++..||.+|..+|.+++++...+..||..|.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~ 260 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELD 260 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444555566667777888888888888887777777766654
No 303
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=62.86 E-value=46 Score=34.02 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=45.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK-VKM 298 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak-l~m 298 (438)
|-.=.-|+|||..-..++++++.|. .++..|+...- -..+|..|++++..++.||-+..+++..+.++ ++.
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l~---d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKE 198 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKLQ---DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKE 198 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHH---HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence 3333568888877555444444333 34444444322 24577889999999999999999988887544 444
No 304
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=62.85 E-value=34 Score=28.89 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
.+|..++..-+.|...|..-++.++.++.....-|..|..+...++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444455555555444443
No 305
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=62.69 E-value=1.2e+02 Score=33.99 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.++++.++..|+.|......+..++.........+..+=..|+.+.+.++.|.+++..-.++.
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356777777777777777777777777777777777777777777777777766665554443
No 306
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.65 E-value=26 Score=27.91 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~ 269 (438)
+++||.++..++.....++.+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~ 24 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENE 24 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444
No 307
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=62.48 E-value=49 Score=33.96 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
.....|..||+.|+..|+.+++++...+.++..|.
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455666677777777777776666666655553
No 308
>PRK10963 hypothetical protein; Provisional
Probab=62.42 E-value=22 Score=34.44 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
=.|.|+..|+.+|..|..++..|. ....+|..|-.++..|.-+|-.+++
T Consensus 41 L~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a~~ 89 (223)
T PRK10963 41 LVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAADS 89 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346778888888888888887655 5677899999888888877755443
No 309
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=62.41 E-value=33 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
||..++...+.|-.-| .++...++.+|+.|..++..++
T Consensus 5 eLR~qLqFvEEEa~Ll-------RRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELL-------RRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 4444467778888877777764
No 310
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.69 E-value=1.4e+02 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE 300 (438)
....+-..|+..+..|+.++..++
T Consensus 149 ~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 149 KTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 311
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=61.68 E-value=37 Score=28.67 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCCCCC
Q 013689 276 DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN 328 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~ 328 (438)
+++..||..|+.+++.|.+.|+... .=+|...++|..-|+|..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~----------~~~qIk~diPe~kvkFts 45 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK----------REFQIKEDIPEKKVKFTS 45 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhccCCccccCcCCC
Confidence 4677888888888888866654422 225566688888899954
No 312
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.68 E-value=18 Score=34.93 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 266 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~ 266 (438)
|-.|.+|...++ -...++++.+|+.+|..|+.+...+.+
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~ 127 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTK 127 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777666 344556777777777776664433333
No 313
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.62 E-value=74 Score=36.61 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~q---k~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
....|+.||-.|.+++..|++ .|..+..|+++|..+++-|+.++..+
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999988877 67777778888877777777776554
No 314
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.52 E-value=51 Score=39.04 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.||...+++|+...+.|..+...+...|.+++++.+
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445554444
No 315
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=76 Score=37.18 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=11.9
Q ss_pred CCCcchhHHHHHHhh
Q 013689 31 NRSQSEWELEKFLQE 45 (438)
Q Consensus 31 nrs~SEW~FerfLeE 45 (438)
-||+==+||+-||=+
T Consensus 386 lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 386 LRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHHHHHHhc
Confidence 378888999888765
No 316
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.20 E-value=1.1e+02 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.+.+.+|+.+++.|+..-..|..+++++.++..
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666566666655554444
No 317
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.14 E-value=1.2e+02 Score=34.03 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
+.|+..|+.+...++...+.|..++.....++..+..+|..|+.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555543
No 318
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=61.06 E-value=9.4 Score=28.87 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 268 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el 268 (438)
|.++...||+=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3456667777776665554 446777777777777777776654
No 319
>PRK02224 chromosome segregation protein; Provisional
Probab=60.89 E-value=1.5e+02 Score=33.74 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 289 IETLRAKVKMAEETVKR 305 (438)
Q Consensus 289 ve~Lrakl~maE~~v~R 305 (438)
+..|+.++..++....+
T Consensus 574 ~~~~~~~~~~l~~~~~~ 590 (880)
T PRK02224 574 VAELNSKLAELKERIES 590 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 320
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.78 E-value=57 Score=31.93 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVN--QKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~--qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
|++.+++.|+.+-..|..-+.... +....++.+=..++.+++.|+.+++.+++.|+-
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 444455554444444444333221 122234444455677777777777777766543
No 321
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.64 E-value=1.3e+02 Score=31.16 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 237 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 237 RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
-|+++-+---+++++.++.+.-..|.-|..+|..-+ .|...-..||.+...||+.|+..+.+
T Consensus 125 ErakRati~sleDfeqrLnqAIErnAfLESELdEke----~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566667788999999998889988888876433 45556677888888898888877644
No 322
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.53 E-value=1.1e+02 Score=33.10 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
+..+..-...+..++..+..+...+..+=+.|+.++..|+++|..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666666666666666666677777777777776665553
No 323
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.38 E-value=31 Score=27.89 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
.....+..++.+++.++.||..|..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677777777777777777777776443
No 324
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.37 E-value=64 Score=31.94 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 281 NNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 281 EN~~Lraqve~Lrakl~maE~~v 303 (438)
++..=+.+++..+..+..++..+
T Consensus 140 ~g~is~~~~~~a~~~~~~a~~~l 162 (334)
T TIGR00998 140 KGLISREELDHARKALLSAKAAL 162 (334)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHH
Confidence 33333455555555554444433
No 325
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=60.35 E-value=53 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.+..++..|..++..+..+|..|..++..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667778888888999999999999988874
No 326
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.20 E-value=95 Score=34.51 Aligned_cols=53 Identities=8% Similarity=0.210 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+++|-.++.........+..+...|..++...+.+...|..++..+..++.++
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333333333333333333333333333333
No 327
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.19 E-value=67 Score=26.94 Aligned_cols=12 Identities=25% Similarity=0.219 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 013689 246 HLNELETQAGQL 257 (438)
Q Consensus 246 ~leeLE~qV~~L 257 (438)
++.+||.++..-
T Consensus 9 Ri~eLE~r~AfQ 20 (72)
T COG2900 9 RIIELEIRLAFQ 20 (72)
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 328
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=60.10 E-value=1.6e+02 Score=33.70 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
.....++-+|+...++|..+++.++++..++..+=-.-+.++..|.-.+..++...+.+...|
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344556777788888888888888777777766555555666666666666666655555544
No 329
>PF14282 FlxA: FlxA-like protein
Probab=59.94 E-value=69 Score=27.87 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSL 264 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L 264 (438)
.|+.++..|+.+...|
T Consensus 23 ~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 330
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.90 E-value=95 Score=26.85 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
|+-|-...+.+|..|+.+|..|..++..|+.++.....|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666777777777777666666665555544444433
No 331
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=59.82 E-value=51 Score=35.51 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLLKGLT---DVNQKYDESAVN 281 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~L----------------e~EN~~L~~el~---~l~qk~~~L~~E 281 (438)
.++|.+||+...-|==||.|..=...+.+|-.-|-.. ...+.+|++..+ ++..+-..|+..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 3566666777777888888888888888887655432 233444444333 333344455566
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 282 NRILKADIETLRAKVKM 298 (438)
Q Consensus 282 N~~Lraqve~Lrakl~m 298 (438)
|++|..++++|..++..
T Consensus 306 n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 306 NQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666554443
No 332
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.43 E-value=1.3e+02 Score=36.43 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
++-..|..|.+++....++.+.+..+|...+.++..+++.+.-.++++.-+.+.
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S 315 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVS 315 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334568999999999999999999999999999999999988888888766543
No 333
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.32 E-value=76 Score=36.36 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
++++.++..|+.+-+....++..++++...+...-..|..+++....+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444444444444444444444444333
No 334
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.19 E-value=3.1 Score=46.58 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 238 RSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~---L~~EN~~Lraqve~Lrakl~m 298 (438)
..-++|.+.+.+|..+|+.|+..|..|..+...|..++.. +..+...++.++..|..++..
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888899999999999998887777776665543 333444444555555444433
No 335
>PF14645 Chibby: Chibby family
Probab=59.16 E-value=33 Score=30.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
|..+..+|+.||.-|+-+++.|-..+.+..+|-..+.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~e 112 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLE 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667777776666666555554444444333
No 336
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.09 E-value=2.1e+02 Score=29.00 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013689 286 KADIETLR 293 (438)
Q Consensus 286 raqve~Lr 293 (438)
+++++.|+
T Consensus 99 q~elEvl~ 106 (246)
T KOG4657|consen 99 QSELEVLR 106 (246)
T ss_pred HHHHHHHH
Confidence 33333333
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=59.04 E-value=1.2e+02 Score=29.68 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
.++..|+.+.......+..|..++..|...=..+|.+-..|-++.+.++.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555543
No 338
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=59.00 E-value=51 Score=33.26 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
.-..+.+|+++-++|+.|+..|..++.. .+..+..||.+||+-+.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 3345566777777888877777555543 33447788888876444
No 339
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.77 E-value=1e+02 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.+..+...|-+++..||.+|..+|....|
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888777777665554
No 340
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=58.62 E-value=1.1e+02 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA-----VNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~-----~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.|..-+..|+.|-..|..++..|+.+|..+. ..-+.|..+++.|-.++...-++|.+|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665553 344556666666655555544444443
No 341
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.45 E-value=29 Score=35.10 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQ---KYDESAVNNRILK 286 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~q---k~~~L~~EN~~Lr 286 (438)
.+..||+.|++++..+.+ +...++.||..||
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr 103 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLK 103 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444333 2234445555554
No 342
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.36 E-value=1.4e+02 Score=35.85 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
....+.|.-++.+|+.+...+..++..+..++..+..++..|++.+......+..++..
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 34456677778888888888888888888888888888877777766655555444433
No 343
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=58.35 E-value=28 Score=37.98 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.-|+.++.....||.+|+.++++|..
T Consensus 275 d~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 275 DGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred HHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 33445555666677777777766543
No 344
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=58.25 E-value=2e+02 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
...+..+..++..|+.++..+..++..+.+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666655554
No 345
>KOG4815 consensus Muscular protein implicated in muscular dystrophy phenotype [General function prediction only]
Probab=58.13 E-value=2.6e+02 Score=29.81 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCCC
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPL 326 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~~p~ 326 (438)
..-.-.+|.-|+.+...-...--+.+.+.+.|...|+-|-.++.-|-.+|+|+|-- +++.+ ..-+.-+-+-.||
T Consensus 304 ~qvag~qv~llkdql~ae~~arleaqarthqll~ankdlle~iq~lv~~lq~le~k---is~ei---~h~s~~p~~~~p~ 377 (511)
T KOG4815|consen 304 TQVAGAQVHLLKDQLAAEAAARLEAQARTHQLLLANKDLLEHIQLLVKQLQELELK---ISGEI---AHGSQDPLLEIPF 377 (511)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hcccc---ccccCCCcccccc
Confidence 33344555555554433222222456678899999999999999999999998843 34433 1223334455666
Q ss_pred CCCCCccCcCCCCC
Q 013689 327 VNVPLDASRNATHP 340 (438)
Q Consensus 327 ~~~~~~~s~~~~vp 340 (438)
--+...+-+|...|
T Consensus 378 ~q~a~~t~~~pkmp 391 (511)
T KOG4815|consen 378 RQGALPTLCDPKMP 391 (511)
T ss_pred ccCCCCCCcCCCCC
Confidence 55444445555444
No 346
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=58.08 E-value=1e+02 Score=34.45 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+.+.......+...+..|.++-..|..+|..+..+|.+++.--..|+.+.+..++.+.++.+
T Consensus 440 m~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~ 501 (707)
T KOG0957|consen 440 MSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILT 501 (707)
T ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhh
Confidence 34444445555555555555556666667777777888877777777777777777777654
No 347
>PRK14160 heat shock protein GrpE; Provisional
Probab=58.03 E-value=91 Score=30.73 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
.+..|+.++..|+.++..|..++..+..+|..+.++-.-+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665555543333
No 348
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.02 E-value=1.3e+02 Score=38.28 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+-..+.=.-...++++.+.+...|+.+...+..++..+..
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~ 943 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKE 943 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444333333333333333
No 349
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.73 E-value=1.1e+02 Score=30.35 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNEL---ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 245 ~~leeL---E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
.|+++| ...+..|+....+++.+.....+....+..|=..|+.++.++|..
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 445555555555555555555555555555666666666666544
No 350
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=57.72 E-value=1.9e+02 Score=28.05 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKG 267 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~e 267 (438)
++|..++.++-+.|.+.|..=.+.+.+.+.++..-+.|-+.+..+
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777777777777777777777777766554
No 351
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=57.48 E-value=50 Score=29.60 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 264 LLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 264 L~~el~~l~qk~~~L-~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+..++..+.+.+.-. ..+=.+|+.++..|+++|..+++..+
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555444444311 13446788888888888887776554
No 352
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.48 E-value=1.7e+02 Score=32.71 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v 303 (438)
.|++++..|++++...+..+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 353
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.44 E-value=62 Score=35.94 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 233 RESARRSRRRKQAHLNELETQAGQLRAE 260 (438)
Q Consensus 233 RESARRSR~RKq~~leeLE~qV~~Le~E 260 (438)
+-.++....-+++.+++++++|+.|+..
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 3444444444566788888888888875
No 354
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.08 E-value=1.5e+02 Score=30.33 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
..++.|+.++..++.+-.....++...++++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555555555555544443
No 355
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.94 E-value=65 Score=38.48 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+.+++++|+..+..|+.||..|..+|..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888887765
No 356
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=56.85 E-value=1.2e+02 Score=28.02 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhc
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM---AEETVKRVTG 308 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m---aE~~v~Rl~~ 308 (438)
...+++....+..|...-.....+-..+...+..|..|...|..-.++++.+|+. ++.+.++|..
T Consensus 20 l~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~ 87 (157)
T PF04136_consen 20 LDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNS 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcC
No 357
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.76 E-value=56 Score=36.58 Aligned_cols=51 Identities=14% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..++.=|.+++..++.+...+..+...+...+.|+..|+++...|+.++..
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445566666666777777777777777777777777777777766654
No 358
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=56.73 E-value=70 Score=34.75 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=46.7
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 244 QAHLNELET----------QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 244 q~~leeLE~----------qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
++|+++|+. |.++-.-||..|...++.-.+-+..-..||.+|.+..++|.-+|.. .+.||.++
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa---EItrLRtl 489 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA---EITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HHHHHHHH
Confidence 467776654 3333445888899998888888888899999999999999887742 35666553
No 359
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=56.37 E-value=2e+02 Score=28.18 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
...-++..+..-+..-..|...+...+++-..+...-...+.++..|+.+...+..
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqa 168 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQA 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555566666655555555555555555555555554444443
No 360
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.33 E-value=2e+02 Score=28.04 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
++.|+.++...+........++..+.+++..+..+-......+..+..++..+++.++.
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444433
No 361
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.23 E-value=85 Score=33.27 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSL------------LKGLTDVNQKYD-ESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L------------~~el~~l~qk~~-~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
-...+..|+.++..++.+...+ ..++..+.+++. .+..+=..+++++..+++++..+++..++.
T Consensus 241 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 241 IQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666666555555543 445555555444 555666666777777777777777665553
No 362
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.05 E-value=93 Score=34.61 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDV---N----QKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l---~----qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
++.++.||.++..|+.+...|..++..- . .++..+..+=..++.++++|..+-..+++.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~ 627 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQ 627 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888888888887777777532 1 134455555566666666666665555543
No 363
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.90 E-value=71 Score=35.57 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
-+|..++..+..|++.|...|.........+..|-++|..+..++-+-+..+|+.++-+.
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555666666666666666667777777776666666777777776653
No 364
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=55.87 E-value=78 Score=30.05 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-~~EN~~Lraqve~Lrakl~ma 299 (438)
..++.|+..++.|....+.+...+..+..++... ..+=..|+.++.+|+.-+.|+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666666666655544322 223444555555554444443
No 365
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=55.82 E-value=1.2e+02 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
..+..+...|.+++..|+.++..++..|..++..+
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666788888888888888888888777554
No 366
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.72 E-value=1.8e+02 Score=36.23 Aligned_cols=72 Identities=8% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 312 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~ 312 (438)
..-...+++.+.++..++.+...+..++..+.+++..+..+-..+..++..++.++...+..+.++.+...+
T Consensus 358 eELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666666666666666666666666666555554433
No 367
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.38 E-value=2e+02 Score=30.42 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=15.5
Q ss_pred CCCCCChHHHHHHHHhhhhhhhHHHHh
Q 013689 105 STAPVDSDEYRAYLKTKLDLACAAVAL 131 (438)
Q Consensus 105 ~~~~~Dp~~y~a~Lk~kL~~~cAAva~ 131 (438)
.++.++-+-| +|-.=.|+||.++-.
T Consensus 95 k~G~Ge~vc~--VLd~Lad~AL~~~~F 119 (359)
T PF10498_consen 95 KQGSGEHVCY--VLDQLADEALKRKNF 119 (359)
T ss_pred hCCCCHHHHH--HHHHHHHHHHHhcCc
Confidence 4566665554 777767777776543
No 368
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=55.33 E-value=1.2e+02 Score=25.03 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
+++++..+..++.+-..+..+...+.++.+.+..+=..-...+..+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~ 73 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPV 73 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5566666666666666666666655555555554433333333333
No 369
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.31 E-value=52 Score=33.23 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETL 292 (438)
Q Consensus 280 ~EN~~Lraqve~L 292 (438)
..++.|..+++.|
T Consensus 89 t~~~~ie~~l~~l 101 (247)
T COG3879 89 TDDAALEDRLEKL 101 (247)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444455555
No 370
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=55.26 E-value=62 Score=33.29 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
.|+=.+|.+++....|..+|..++..|+.+...+...=+..|..++.||.-
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566667777777777777777777766655555544444444444444443
No 371
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.11 E-value=67 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGL 268 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el 268 (438)
+++.|..++..|..+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555544
No 372
>PF14282 FlxA: FlxA-like protein
Probab=54.85 E-value=57 Score=28.37 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRA 259 (438)
Q Consensus 246 ~leeLE~qV~~Le~ 259 (438)
.+..|..++..|..
T Consensus 27 Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 27 QIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHc
Confidence 34556666665555
No 373
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=54.83 E-value=43 Score=35.12 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+.|..+..||.+||+++..|++++...++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777776666443
No 374
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.69 E-value=1.6e+02 Score=36.08 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLL--------KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~--------~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.+.....+|+..+..|+.+-..|. .++....++......+.+.|.+++..|+..++.++...
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556655555555555554 23333344444445555555555555555555554333
No 375
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.66 E-value=55 Score=29.24 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 284 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~ 284 (438)
|.-|++|..+|...+.||-+|+.+.+.|-|.+..|...-.+
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSV 109 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhh
Confidence 45566777777777777777777777776666666554444
No 376
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.61 E-value=1.1e+02 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKG 267 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~e 267 (438)
++.|..+|+.|..+...|...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 377
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=54.58 E-value=1.6e+02 Score=26.83 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCC
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVG 323 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~ 323 (438)
..|..++++.+.+-..|...+..-++++.....+=..++.=-..|.+=-..+++.+..+..+|.+|..-...+-+.
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLep~~ 127 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEILPEEERLEPFV 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCCCCC
Confidence 3455566666667777777777666666655543333222222222222235677778888898887666655443
No 378
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.52 E-value=1e+02 Score=34.86 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~q---k~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.....|+.||-.|.+++..|++ .|..|.-|+++|..+++-|..++..
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777766 5677777888877777766655543
No 379
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.26 E-value=1.1e+02 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 276 DESAVNNRILKADIETLRA 294 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lra 294 (438)
..|..+-..|+.++.....
T Consensus 20 dqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 20 DQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444433
No 380
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.96 E-value=83 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETL 292 (438)
Q Consensus 280 ~EN~~Lraqve~L 292 (438)
.++..|+..+.++
T Consensus 94 ~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 94 QEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 381
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.81 E-value=2.4e+02 Score=31.10 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l 271 (438)
++..++.++..+..++..+
T Consensus 68 ~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 68 EVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 382
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=53.74 E-value=66 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
...|..||+.|..+.. ..+...+|...|.+.++=
T Consensus 32 ~~kL~~en~qlk~Ek~-----~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKA-----VAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHh
Confidence 4444444444444433 223345666666666553
No 383
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.52 E-value=50 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
|...+..|..++..+.+++..+...+..+++++..|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444445555555555555555433
No 384
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=53.36 E-value=76 Score=33.31 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Q 013689 279 AVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 316 (438)
Q Consensus 279 ~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~ 316 (438)
..|-+.|..+++.||.||..+|.+.+.-..|+.-|+.+
T Consensus 114 LEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klR 151 (351)
T PF07058_consen 114 LEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLR 151 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999998888777777655544
No 385
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.05 E-value=2.2e+02 Score=27.46 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+.++..+.+++..|.-|+.+|..++..|....
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555544443
No 386
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.62 E-value=56 Score=34.55 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013689 300 EETVKRV 306 (438)
Q Consensus 300 E~~v~Rl 306 (438)
++.++++
T Consensus 56 ~~~~~~~ 62 (398)
T PTZ00454 56 KEEVKRI 62 (398)
T ss_pred HHHHHHH
Confidence 3333444
No 387
>PHA03011 hypothetical protein; Provisional
Probab=52.61 E-value=1e+02 Score=27.66 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
+.+++|..|-..|-.|-+-+..++.++.+-.+.-..+=--||+++..|.
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK 112 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLK 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444433333344455555443
No 388
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.43 E-value=47 Score=30.13 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
+|..+|..|+.|+..+..-..+|..++.-|+-..+..|+++..
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555555554444444433
No 389
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=52.42 E-value=1.7e+02 Score=34.63 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
++...++.|+.|-..|..+++.++..
T Consensus 491 ~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 491 SQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 390
>PRK14127 cell division protein GpsB; Provisional
Probab=52.38 E-value=82 Score=28.08 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
+|+++......|..||..|..++.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~ 54 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENA 54 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 391
>PF13166 AAA_13: AAA domain
Probab=52.37 E-value=2.3e+02 Score=31.42 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.++...+..+..+...+..++..+......+..+-..++.++.+|++++...+..++++
T Consensus 406 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 406 AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444455555556666666666666666677777777777777766555444443
No 392
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=52.24 E-value=60 Score=36.35 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
|.+|+.+-++|+.||..|+.+|..+.
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33344444444444444444444333
No 393
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=52.12 E-value=3.5e+02 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
-+|+.--.|-.++..+|..++..|-.+...|..+...|
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555554444444444444433
No 394
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.99 E-value=2.3e+02 Score=32.70 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.-++.+...+..+...-..|..+++....++..+...=..++.+++.++.+.+.+|+...++
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444555555555555555555555555555544443
No 395
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=51.81 E-value=1.7e+02 Score=27.01 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTD---------------------VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~---------------------l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
-.+|+.||..|..+|+. +.++.+.+..++..|+.++......+..+++.+.++
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655544 334555666677777766666655555555444443
No 396
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=51.64 E-value=87 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
|+.|..-+..|+..|..|.. ++..|...|+..|.++.+.
T Consensus 35 LD~Lns~LD~LE~rnD~l~~-------~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 35 LDQLNSCLDHLEQRNDHLHA-------QLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544444 4457777888877766554
No 397
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.55 E-value=1e+02 Score=31.13 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 276 DESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
..|..++.+=++++++.+..+..++..
T Consensus 141 ~~L~~~g~vS~~~~~~a~~~~~~a~~~ 167 (346)
T PRK10476 141 EPLLAKGYVSAQQVDQARTAQRDAEVS 167 (346)
T ss_pred HHHHHCCCcCHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544433
No 398
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.45 E-value=1.2e+02 Score=34.31 Aligned_cols=63 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH------
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTD----------------------------VNQKYDESAVNNRILKADI------ 289 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~----------------------------l~qk~~~L~~EN~~Lraqv------ 289 (438)
+..+.+|+.++..|+.++..|..+|.. ....+..|..||..|++++
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred --------------------HHHHHHHHHHHHHHHHH
Q 013689 290 --------------------ETLRAKVKMAEETVKRV 306 (438)
Q Consensus 290 --------------------e~Lrakl~maE~~v~Rl 306 (438)
..|+.+|..++....||
T Consensus 589 ~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 589 NSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL 625 (722)
T ss_dssp T----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
No 399
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.35 E-value=1.1e+02 Score=24.67 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+.+....++..+..+..++..+..+|...++..+-+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666777777776666665554
No 400
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.30 E-value=2.1e+02 Score=34.69 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=33.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT---DVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~---~l~qk~~~L~~EN~~Lraqve~ 291 (438)
.+.+..+..+.-+.+++..+..|+.++..++.+...|...+. .+..++..+..++..|+.++..
T Consensus 840 ~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777776666666555544433332 2333444444444444333333
No 401
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.97 E-value=1.2e+02 Score=27.04 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 233 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 233 RESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
++.....-..=.+..-.++.++..++.+...+..++..+.++|.
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 402
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=50.92 E-value=2e+02 Score=33.53 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+-+..-|+.|+..|.+.+..-.++......||..++.+++.|..+...++..+.++
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888877777777777888888888877777777666665554
No 403
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=50.38 E-value=87 Score=32.64 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL 257 (438)
Q Consensus 220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~L 257 (438)
+...+|.-|..+||+-.++-++++.++...+..++.+|
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666788888887777777777655555554443
No 404
>PRK11281 hypothetical protein; Provisional
Probab=50.30 E-value=2.3e+02 Score=34.32 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
+..+-..|..|.+++....++.+.+..+|...+.++..+++...-.++++.-+.+.
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s 335 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGS 335 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455679999999999999999999999999999999999988888887766543
No 405
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=50.16 E-value=63 Score=34.19 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKG 267 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~e 267 (438)
+.++..|+.++..|..+
T Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEE 44 (398)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 406
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=50.08 E-value=66 Score=29.54 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
-+|.+--++.+-+ +-|.....-+..|+.||.-|+..+..+++-|.+=...=..|+.++..
T Consensus 65 vEKTi~til~Lhe----------Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 65 VEKTIGTILNLHE----------KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred hhhHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566666666532 33555566788999999999999998888887655555555555543
No 407
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=49.93 E-value=2.7e+02 Score=34.15 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
..|++....-++++++++..+...+.+...+..++..+..++.
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~ 913 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLR 913 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555444444433
No 408
>PTZ00464 SNF-7-like protein; Provisional
Probab=49.69 E-value=2.2e+02 Score=27.93 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
+=.+...++.+-..|...+..+.+....++.
T Consensus 66 ~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 66 LLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677777777777777766666554
No 409
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=49.68 E-value=1.7e+02 Score=28.07 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
.++..++++...|..+|..|+.+...+......+-.++.|...+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~ 154 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555555555555555555555555555555555554443
No 410
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=49.68 E-value=2.7e+02 Score=27.58 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=45.2
Q ss_pred CCCCCCCCCCccccCccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHH
Q 013689 196 SGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRA--------EHSS-LLK 266 (438)
Q Consensus 196 Sgssr~~Sd~d~~~g~~~~~~~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~--------EN~~-L~~ 266 (438)
+.+|-..+||+|.++-. -+-++--|.||+...-..-|..|.-=+.=.++|..-|-+-+. -|.- |.+
T Consensus 35 sssSApNtdd~ds~~hS-----~a~k~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqk 109 (229)
T KOG1319|consen 35 SASSAPNTDDEDSDYHS-----EAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQK 109 (229)
T ss_pred CCCCCCCCCcccccchh-----HHHHhhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHH
Confidence 33455566665544321 111233345555444444444444444445666655543221 2222 222
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 267 GL---TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 267 el---~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.+ ..|.++....+.|-..|++++.+|+---..-|.|++
T Consensus 110 sidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~ 150 (229)
T KOG1319|consen 110 TIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVK 150 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223333344455555666666666543333344443
No 411
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=49.47 E-value=1.3e+02 Score=35.08 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSS---------------LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~---------------L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+.-.+.+|||+++.-|+.|..+ .-.++.+++.++..++.|=++|.+.-++|++....+.+.
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~ 128 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445567777777776666655 134555555555555555555555555555554444433
No 412
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=49.42 E-value=1.6e+02 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+|..++.....|...|+.-+..||.||.--.++.+++.
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334555566666666666666655555555543
No 413
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=49.41 E-value=2.4e+02 Score=33.51 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=10.6
Q ss_pred CCCCCCCcchhHHHHHHhh
Q 013689 27 ALPMNRSQSEWELEKFLQE 45 (438)
Q Consensus 27 ~~~Mnrs~SEW~FerfLeE 45 (438)
.+||+-=+++-.|+.-+=.
T Consensus 152 vdmmd~~D~ll~lq~~vF~ 170 (980)
T KOG0980|consen 152 VDMMDYMDSLLELQQTVFS 170 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666554433
No 414
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.40 E-value=1.3e+02 Score=30.73 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
|+.-...+..++..+++++..+..+...|.++++..+..|...+ |||..+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~q---KRL~sL 216 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQ---KRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33445566667777777777777777777777766655554444 444443
No 415
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.24 E-value=33 Score=37.32 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+.|..+|..|..+|..|+.+++.+.-++..+..||+-|+.--.+++++...-|+-
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEf 100 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEF 100 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHH
Confidence 5677778888888988999999998889899999988876666666554443333
No 416
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.07 E-value=73 Score=34.98 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..|++-|...+.+....-..+...+..+.++..++..+=..|+-++..|.++.+.+.
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq 487 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ 487 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555444443
No 417
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.76 E-value=1.1e+02 Score=35.67 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLK---------------------GLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~---------------------el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++.-|...|...
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir 167 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR 167 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888887765 455677788888889999988888887777654
No 418
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=48.76 E-value=70 Score=34.52 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+++.+|+.++..++.....+.. ...-..+..+=..|..++..|++++..++.+++++.
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677666666655554432 112223344445566666666666666666666654
No 419
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=48.67 E-value=48 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLR-AEHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le-~EN~~L~~el~~l~q--------k~~~L~~EN~~Lraqve~Lrakl 296 (438)
++.|+.+++.|+ .+...+.+++..... .|+....+-..|..++..|+.+|
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L 68 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRL 68 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666664 355555555554432 33344444444444444444333
No 420
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.56 E-value=2.8e+02 Score=27.31 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
++.|+.++..|..+-..|..+......+...+...=..+..+...|...+
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554444444444444443333
No 421
>PRK01156 chromosome segregation protein; Provisional
Probab=48.51 E-value=3.1e+02 Score=31.49 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 013689 286 KADIETLRAKVKM 298 (438)
Q Consensus 286 raqve~Lrakl~m 298 (438)
..++.+|+.++..
T Consensus 255 e~~i~ele~~l~e 267 (895)
T PRK01156 255 ESEIKTAESDLSM 267 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 422
>COG5570 Uncharacterized small protein [Function unknown]
Probab=48.19 E-value=30 Score=27.58 Aligned_cols=50 Identities=30% Similarity=0.380 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.||.+|+.+-..|+.|.+.-...-..=-..+..|....-+||.+++.|++
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666655555443221111111233444444456666666654
No 423
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.17 E-value=2.5e+02 Score=30.77 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 235 SARRSRRRKQAHLNELETQ-----AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 235 SARRSR~RKq~~leeLE~q-----V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
-|-+-+..-+++++.||.+ +++|..|-+.|..+-..|.+++..++.++..|--++.+++.+-..+
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777653 3455555555666656666666666666666666666655554433
No 424
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.99 E-value=1.1e+02 Score=30.44 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689 256 QLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 312 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~-qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~ 312 (438)
+++..-..++.++..+. ..+..+..||..|+.+++.|+.+| .+.+++.+.-+++
T Consensus 98 QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l---r~ei~~~~a~~rL 152 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL---RHEISKTTAEFRL 152 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhcee
Confidence 33444455555555443 478889999999999999998776 3445666555443
No 425
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.75 E-value=94 Score=34.49 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKVKM 298 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L----raqve~Lrakl~m 298 (438)
++++++++.-++.|..++..|..+|..+..+|..+..+|..+ +++++.|..+|..
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999999998887766655 6777888777654
No 426
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.45 E-value=1.2e+02 Score=34.36 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=7.4
Q ss_pred cchhHHHHHHhh
Q 013689 34 QSEWELEKFLQE 45 (438)
Q Consensus 34 ~SEW~FerfLeE 45 (438)
..++.|..+|.-
T Consensus 15 ~~~idl~~l~~~ 26 (726)
T PRK09841 15 ENEIDLLRLVGE 26 (726)
T ss_pred CCCcCHHHHHHH
Confidence 456666666654
No 427
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=47.26 E-value=1.1e+02 Score=25.31 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRA-EHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 247 leeLE~qV~~Le~-EN~~L~~el~~l~q--------k~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
++.|+.++..|+. +...+..++..... .|+....+-..|.+++..|..+|..
T Consensus 11 ~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 11 YEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666554 44556666665543 5667777777777777777766654
No 428
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=47.17 E-value=92 Score=34.49 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~------qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
++.||.++..|+.+-..|..++..-. .++..+..|=..++.++++|..+-
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 625 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERW 625 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877775421 133344444444444444444443
No 429
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.06 E-value=2.9e+02 Score=33.95 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=5.3
Q ss_pred HHHHHHHHhhh
Q 013689 112 DEYRAYLKTKL 122 (438)
Q Consensus 112 ~~y~a~Lk~kL 122 (438)
.+|...+...|
T Consensus 163 ~~Yr~~v~~~l 173 (1353)
T TIGR02680 163 TDYRRAVDEEL 173 (1353)
T ss_pred HHHHHHHHHHh
Confidence 44554444444
No 430
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=47.05 E-value=2.7e+02 Score=26.75 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 236 ARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 236 ARRSR~RKq~~leeLE~-------qV~~Le~EN~~L~~el~~l~qk~~~L~--~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+.+...+-+.++.-|+. .++.|+.++..+..++.++.+.|..-. ..-..|...+.++..+++.+...+
T Consensus 25 ~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 25 ASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444 566777777777666666666543322 333445555566666665555444
No 431
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=46.79 E-value=31 Score=33.63 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+.+|....+.|.++|..|..+|..|..++.+|++.+..+...
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~ 148 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKRE 148 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 4445666666677777788888888888888887776655443
No 432
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.70 E-value=42 Score=30.29 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 265 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~ 265 (438)
-|-.|..|+.++|+.++ ++.+++|+.++..|+.+.+.+.
T Consensus 94 ~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 94 YEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555444432 2455666666666665555443
No 433
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=46.64 E-value=55 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
.....++..|+.||..|+.+|..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677889999999999999886653
No 434
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.52 E-value=3.6e+02 Score=28.08 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=4.5
Q ss_pred HHHhHHHHHHH
Q 013689 229 MLSNRESARRS 239 (438)
Q Consensus 229 ~lsNRESARRS 239 (438)
-+.+..++-++
T Consensus 31 El~~~~~~~~e 41 (294)
T COG1340 31 ELRKEASELAE 41 (294)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 435
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=46.49 E-value=2.1e+02 Score=26.11 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 227 RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
--+|-|.|.||--+.|..+ +.++.++..+..-...+..++.
T Consensus 36 ~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 36 YQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHH
Confidence 3455566666665555444 4555555555444444444444
No 436
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.43 E-value=1.9e+02 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 259 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.-...|..+|+.+-.+..+...-...++.++.+++..+......++.
T Consensus 61 ~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 61 STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344555555555555555555555555555555555554444433
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.32 E-value=1.8e+02 Score=33.62 Aligned_cols=12 Identities=42% Similarity=0.313 Sum_probs=6.6
Q ss_pred CCCChHHHHHHH
Q 013689 107 APVDSDEYRAYL 118 (438)
Q Consensus 107 ~~~Dp~~y~a~L 118 (438)
...||.+-.++.
T Consensus 413 ~GtD~~eg~ala 424 (771)
T TIGR01069 413 AGTDPDEGSALA 424 (771)
T ss_pred CCCCHHHHHHHH
Confidence 445666655543
No 438
>PRK10722 hypothetical protein; Provisional
Probab=46.23 E-value=2.7e+02 Score=28.38 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
++..+..+++.|+.++..+.+||..+.++
T Consensus 177 qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 177 ELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444443
No 439
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=46.22 E-value=45 Score=29.80 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~ 275 (438)
..+|+.||.-|+-+++.|-..+
T Consensus 81 ~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777776655443
No 440
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.22 E-value=1.9e+02 Score=30.11 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 276 DESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.++..|=+.||+=|+++|.-|...
T Consensus 120 KEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchh
Confidence 345556777777777777766554
No 441
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.16 E-value=1.9e+02 Score=24.74 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
...++.-....+-|+..|.....+...+.+....+...-..|+++..+|+..++...++-+.++.+
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTEL 78 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.13 E-value=2.6e+02 Score=26.30 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 268 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el 268 (438)
.+|..++...-+.|...+..=.+.+.+.+.++...+.|-..+..+.
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677888888778888888888888888777766554
No 443
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=46.08 E-value=2.1e+02 Score=27.06 Aligned_cols=39 Identities=5% Similarity=0.152 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 268 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 268 l~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
...+..++..++.+...|++.+..-..+|......|.|+
T Consensus 81 r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 81 RDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555444444443
No 444
>PLN02320 seryl-tRNA synthetase
Probab=46.03 E-value=1.1e+02 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVN--QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~--qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.|..+++.|+.|-..+.+++.... .....+..+=+.|+.++.+|..+++.+++.+..+
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777767666665411 1345677777888888888888888887766654
No 445
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.90 E-value=1.2e+02 Score=28.39 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
...+|..++-.-+.|.+.|...-.-=.++..+|..|...|+.++.++|.+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333455667777777777777776543
No 446
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.89 E-value=2.5e+02 Score=34.33 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 230 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 230 lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.+--++.+.+-.+++..+.+|+..+..++.|-.+..+.+..+.+....+...-..|++++++++..+.+..
T Consensus 527 k~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~ 597 (1293)
T KOG0996|consen 527 KGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSR 597 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445667778888999999999999999999999999998888888888888888889988888766654
No 447
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.77 E-value=3.4e+02 Score=28.26 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+|..++..+..+...|..++..+.++...+..+-..|-.++.+|+.+...
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555555555555555555555555555554433
No 448
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.74 E-value=2e+02 Score=31.59 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.|++..+..+-.+++.|+.||-++ +.+.|+.||.+||..+..|+....
T Consensus 281 ~rrhrEil~k~eReasle~Enlqm---------r~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 281 ERRHREILIKKEREASLEKENLQM---------RDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555554333 334566777777766666655443
No 449
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=45.57 E-value=67 Score=29.07 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
-.+...++..++..+..|..++-.+-.+...+...+..|..+-+.|+.+|..++..+
T Consensus 67 ~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 67 DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666655555555555555555555556655555554443
No 450
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.22 E-value=3.6e+02 Score=31.50 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.++....++..++.|-+.+..+|.++...+.....+-++|+.+++.|...|
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444555555555555555555555555555544444
No 451
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=45.22 E-value=1.1e+02 Score=27.33 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 013689 287 ADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 287 aqve~Lrakl~maE~~v~Rl~~ 308 (438)
++.+.|+.-++.+..+-+||..
T Consensus 78 ~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 78 AQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5556665555556666666654
No 452
>KOG2260 consensus Cell division cycle 37 protein, CDC37 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.15 E-value=1.5e+02 Score=31.60 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------QKYDESAV------NNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~--------qk~~~L~~------EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
..+++.+++|..++...+.-+..+.+.+..|. ......++ +|..++..+++|..+.++....++
T Consensus 43 ~~~~q~~eei~k~~~~~~~ll~e~~e~l~~l~~~~~s~~~~E~~k~e~~~~ei~~~e~~~~~~eeL~k~ek~~~w~td 120 (372)
T KOG2260|consen 43 AERKQEQEEIKKSKDMYSRLLEEVQEILSNLEVSSLSGLKKELEKFETVDSEIREGEAWEDKLEELEKKEKKEPWLTD 120 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHhcccccccccchHHHHHHHHHHHHHhhCcccch
Confidence 34455667777777766666666666555433 33334444 678888888888888777665555
No 453
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=44.61 E-value=53 Score=32.01 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
++|+.+...|+.++..|...+..|..|+..|++++..+.....+-
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~ 152 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQKS 152 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhccC
Confidence 367777777778888888888888888888888888877776663
No 454
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.53 E-value=2.8e+02 Score=32.53 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
+.+.|..|-..+++++..++..-..+..++..|++++..|++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345666667777777777777777777778888888887775
No 455
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=44.47 E-value=1.9e+02 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 272 NQKYDESAVNNRILKADIET 291 (438)
Q Consensus 272 ~qk~~~L~~EN~~Lraqve~ 291 (438)
.+++..+..+|..|+.++..
T Consensus 41 tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 41 TKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHhhHHHHHHHHHc
Confidence 34444555566666655544
No 456
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=44.44 E-value=1.2e+02 Score=31.42 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
-++.+|+.++..-+..+.+|+.....|.....+|..+-.....-|--|+.+|+.-++.+.||..-
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888887777777777777888888888777777543
No 457
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.42 E-value=1.3e+02 Score=30.16 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
.-+|..++.++..+..++.+...|..++..++.+.... |+.||++++...
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34555555555444445555556666666666655555 667888887654
No 458
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.25 E-value=73 Score=29.26 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
.|+.|...=-.++..|++++..+...|+.|
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333444444444
No 459
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.17 E-value=1.2e+02 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
.+|+++..++..|+..+.....++..+++++..|.
T Consensus 51 ~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~ 85 (141)
T PF13874_consen 51 ERLKEINDKLEELQKHDLETSARLEEARRRHQELS 85 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443
No 460
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.08 E-value=4.1e+02 Score=30.90 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQAHLNELETQAGQLRAEHSS 263 (438)
Q Consensus 238 RSR~RKq~~leeLE~qV~~Le~EN~~ 263 (438)
++|.+-...+..|.....+|+.+...
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~ 532 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQE 532 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554433
No 461
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.89 E-value=2.4e+02 Score=31.07 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+.+..++..+.+++..+..+-..++..+..|+..-..+++.++++
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555556666666555555554444443
No 462
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.81 E-value=1.9e+02 Score=33.36 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=8.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNEL 250 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeL 250 (438)
+++..-+.-++--..+++.++.+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333333333333
No 463
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=43.77 E-value=2.6e+02 Score=29.95 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 292 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~--EN~~Lraqve~L 292 (438)
.++.++..++.+...|..++..|++++..+.. .|.=|-++++.|
T Consensus 96 ~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyL 141 (390)
T PRK10920 96 QQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 33444555555555555555555555555542 234455555554
No 464
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.75 E-value=1.5e+02 Score=35.10 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=14.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHH
Q 013689 219 DSVDDKRARRMLSNRESARRSRRR 242 (438)
Q Consensus 219 d~~d~KR~RR~lsNRESARRSR~R 242 (438)
|..+.+++-|.+.|+-.-+.+-.-
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777776665554433
No 465
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=43.64 E-value=85 Score=32.75 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 278 SAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 278 L~~EN~~Lraqve~Lrakl~ 297 (438)
+..+...++.++..|+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 27 LEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 466
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.62 E-value=26 Score=30.71 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 248 NELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 248 eeLE~qV~~Le~EN-~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+.++.++..|...- ..-..-+...+.....+...|..|+.++.+.+..|...+..++.|.
T Consensus 18 ~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 18 EQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444322 2222333555566677778888888888888777777776665554
No 467
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=43.53 E-value=4.7e+02 Score=28.64 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 236 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 236 ARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
|++-..+-++.+-.|..+...|+.+...|..+...+..+...|.++-+.|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555556666666666666666666666666665555
No 468
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.41 E-value=1.4e+02 Score=34.82 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
.+.|..++..+.+++.++.-+-..|+.+++.||..++.++.
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34677777777888888888888888888888888777663
No 469
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.29 E-value=2.1e+02 Score=30.37 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKG--------------LTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~e--------------l~~l~qk~~~L~~EN~~Lraq 288 (438)
..+..-+...+...+..=.-+.-.+.+|..++..|+.+-...... +..+...+..+..+...|+++
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 332 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEAR 332 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 289 IETLRAKVKMAEETVKRV 306 (438)
Q Consensus 289 ve~Lrakl~maE~~v~Rl 306 (438)
+..|+.++...++.+.++
T Consensus 333 ~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 333 VAELTARIERLESLLRTI 350 (498)
T ss_pred HHHHHHHHHHHHHHHHhc
No 470
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.24 E-value=26 Score=39.38 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred ccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 013689 213 ETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV------------ 280 (438)
Q Consensus 213 ~~~~~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~------------ 280 (438)
++..+.+..+.+|.+++..--.--...+.....++++|+..+...+..+..+..++..+.++......
T Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L 508 (722)
T PF05557_consen 429 ETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNEL 508 (722)
T ss_dssp -----------------------------------------------------------------HHCCCCHHHHHHHHH
T ss_pred hccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 281 --NNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 281 --EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+|..|..++..|+.++..++..+.+++
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~ 537 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLT 537 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 471
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.10 E-value=3.2e+02 Score=33.09 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+-.+++.++=.+-...+...|..+++|+.+....-.+...|...+....-+...+..+|..|+.+..+|..+.+.+=..
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcc
Q 013689 303 VKRVTGL 309 (438)
Q Consensus 303 v~Rl~~l 309 (438)
-+++..+
T Consensus 476 E~~l~~~ 482 (1200)
T KOG0964|consen 476 EKKLRSL 482 (1200)
T ss_pred HHHHHHH
No 472
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.00 E-value=4.2e+02 Score=29.53 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+..+|+.+=-....+-+.+-......|+.++.+|..+..........+.+....|..+...++....+|+..-...+..
T Consensus 81 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~i 160 (779)
T PRK11091 81 EESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSF 160 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 013689 303 VKRV 306 (438)
Q Consensus 303 v~Rl 306 (438)
++.+
T Consensus 161 l~~~ 164 (779)
T PRK11091 161 LDAS 164 (779)
T ss_pred HhcC
No 473
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.85 E-value=1.5e+02 Score=29.65 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~--EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+++.++..|+.+...|..++..++.+|..+.+ +|-+-|.+-+.-..+....+..++.|
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l 123 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI 123 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK01156 chromosome segregation protein; Provisional
Probab=42.84 E-value=4.6e+02 Score=30.20 Aligned_cols=86 Identities=8% Similarity=0.144 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK----------GLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~----------el~~l~qk~~~L~~EN~~Lraqve 290 (438)
...+..+..+.+-+.-.+--...+..+++++.++..|..+...|.. ++..+...+..+..+=..|+.++.
T Consensus 619 ~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 698 (895)
T PRK01156 619 KSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRA 698 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 291 TLRAKVKMAEETVKRV 306 (438)
Q Consensus 291 ~Lrakl~maE~~v~Rl 306 (438)
.|..++...+..+..+
T Consensus 699 ~l~~~i~~l~~~~~~l 714 (895)
T PRK01156 699 RLESTIEILRTRINEL 714 (895)
T ss_pred HHHHHHHHHHhhHHHH
No 475
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=42.82 E-value=56 Score=33.37 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 268 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 268 l~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+..+..++..|..||..|++++++|++++..+++.+..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.70 E-value=2.1e+02 Score=28.18 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+=.+|-|+=-.+.+.-|-..-.-++.-|..|...+..++ .|...|+.|+.+.++||..+-++.+ +|..+
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR----~LKe~NqkLqedNqELRdLCCFLDd--dRqKg 88 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIR----GLKEVNQKLQEDNQELRDLCCFLDD--DRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcccch--hHHHh
No 477
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.66 E-value=2.7e+02 Score=25.49 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD-----ESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~-----~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
|..-+.+|+.++.+++.|.+.|.-+...+..... .+..=-..+..+...+..+.+.+......+..|
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 478
>PRK11281 hypothetical protein; Provisional
Probab=42.62 E-value=3e+02 Score=33.45 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRK-----------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RK-----------q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
+|.+.|+-.||.-.+.-|.+- ..+...|+.+...|+.+|..++.++....+...-+..+-..++.+++.
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 013689 292 LRAKVKMAEETVKR 305 (438)
Q Consensus 292 Lrakl~maE~~v~R 305 (438)
++++++.+++.+..
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
No 479
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.55 E-value=5.3e+02 Score=29.48 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.+.+|++.+.+--+--|.--.+.++.|+.++.++..-+.+......++.+++.+-.-|.+-+..-+.+...|+.-.+.+.
T Consensus 76 ~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~ 155 (632)
T PF14817_consen 76 NEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQ 155 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013689 301 ETVKRV 306 (438)
Q Consensus 301 ~~v~Rl 306 (438)
..+.++
T Consensus 156 ~~~~~~ 161 (632)
T PF14817_consen 156 GQVEQL 161 (632)
T ss_pred HHHHHH
No 480
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.44 E-value=2e+02 Score=23.81 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDES---AVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L---~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+|..++..+..+...|.+.+...-..+..+ ...++..+.+.+.|....+.+-..+.++
T Consensus 29 ~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~ 90 (102)
T PF14523_consen 29 QELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKA 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=42.32 E-value=1.5e+02 Score=32.75 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
|+||.+-..+.+.|+-|-.++....-.|+++|.....+-..--.+--++..-|...|+.|.||..+
T Consensus 403 qk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH
No 482
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=42.30 E-value=1.2e+02 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
|...|..|..|+..|..++..+++.+..+..+......-...+...|+
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~ 48 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLN 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=42.21 E-value=2e+02 Score=27.20 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
.+.++++++.|.-|+--=+.|-....+|..++.+.+.....|..+|..+..++..
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.18 E-value=82 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
++||+.++..|+.|...+..++..-......+.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.17 E-value=2.9e+02 Score=25.80 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-------AVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-------~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.++...++.-.+....+-..|+.++-.-+.+++.| ...=+.|..||..||.+|....-..+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.04 E-value=90 Score=32.57 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
....|+.++..|..++..+..+...+..+...++.++..|+.++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.98 E-value=1.6e+02 Score=22.80 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN----NRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~E----N~~Lraqve~Lrakl~maE~~v~R 305 (438)
..++.+..+...++.+......++..+......|... ...++..+..|..+...+...+..
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.93 E-value=1.9e+02 Score=31.88 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
..|++-|...+.+....-..+...+..+.++..++..+=..|+-++..|.++.+.+...+..
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 489
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.62 E-value=2.1e+02 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccCCC
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVP 320 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~---L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~ 320 (438)
+..+..++.++..++.+...+..++..++..+.. ...+-..++.++..++.+++.++..++.+......+.....+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~ 142 (322)
T TIGR01730 63 QLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFD 142 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCC
Q ss_pred C
Q 013689 321 G 321 (438)
Q Consensus 321 ~ 321 (438)
|
T Consensus 143 G 143 (322)
T TIGR01730 143 G 143 (322)
T ss_pred c
No 490
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=41.55 E-value=1.2e+02 Score=28.21 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
++.|..+++.|......|...|..+.+++..+..+++.+..+...
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=41.54 E-value=1.8e+02 Score=27.96 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCccccCccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 201 EDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 201 ~~Sd~d~~~g~~~~~~~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
+.|||+|+| +--|+|..-.-|-|+-..- ++.++...++..|+.+.......+..+.+.+..+..
T Consensus 11 ElSDDeDie----~HPniD~~S~~rwk~~~~~------------e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 74 (177)
T PF03234_consen 11 ELSDDEDIE----VHPNIDKRSLFRWKHQARH------------ERREERKQEIEELKYERKINEKLLKRIQKLLSALDK 74 (177)
T ss_pred cccCccccc----cCCCCChHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHH
Q 013689 281 NNRILKADIETL 292 (438)
Q Consensus 281 EN~~Lraqve~L 292 (438)
....-...+...
T Consensus 75 ~~~~~~~~v~~~ 86 (177)
T PF03234_consen 75 EEEADKQEVMES 86 (177)
T ss_pred cccchHHHHHHH
No 492
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.52 E-value=1.7e+02 Score=34.66 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 238 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 238 RSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+++.+-.+...-+..-|..|+..-..+..+|..|+.++..++.|-..|.+-+..++..++.++-.+..++.
T Consensus 78 ~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s 148 (1265)
T KOG0976|consen 78 QSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS 148 (1265)
T ss_pred hcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 493
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=41.30 E-value=2.6e+02 Score=26.64 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD-IETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq-ve~Lrakl~maE~~v~Rl~ 307 (438)
++.+.+...+++.|+.....|...++.+.+.++-+..+|-.--.- +++|+.++...+..+..+.
T Consensus 71 kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 71 KKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.13 E-value=2.9e+02 Score=34.11 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
++..+-+.+--+.+.+--.||.+....-.++.++|+.|-++|..+-....+.++.|+.+-..-...++.+.+.|.-+|..
T Consensus 1660 ~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r 1739 (1758)
T KOG0994|consen 1660 EQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKR 1739 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Q ss_pred HHHHh
Q 013689 303 VKRVT 307 (438)
Q Consensus 303 v~Rl~ 307 (438)
+.+++
T Consensus 1740 ~~~vl 1744 (1758)
T KOG0994|consen 1740 VESVL 1744 (1758)
T ss_pred HHHHH
No 495
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=41.07 E-value=79 Score=30.20 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
|.++..++..|+.++..|...+ .-|..|+..+-.+..+|+..++.++++-|
T Consensus 113 L~e~snki~kLe~~~k~L~d~I-----------v~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNI-----------VTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhc-----------cccHHHHHHHHHHHHHHHHHHHHHHhhcC
No 496
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.92 E-value=77 Score=29.39 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQ-----KYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~q-----k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
....+..+|+.|..+|++|+..+.. ++..+..+-..|.+|++++...+...+..++...+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK11519 tyrosine kinase; Provisional
Probab=40.86 E-value=2e+02 Score=32.54 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE--SAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~--L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
.++.-.+.+..-++-++.|+.|+..++.+......+++..++++.. +..|.+.+..++.+|++++..++.....+..
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.75 E-value=3.1e+02 Score=33.22 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 229 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+..-++.+.+--..|..++.+|+..+...+.+...+..++..+.+++.++...-..|-.+=..|+..+.-.++.+.+
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF15556 Zwint: ZW10 interactor
Probab=40.74 E-value=3.9e+02 Score=26.85 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
||+--|.++|.+-..-.....+||..|..-...++..-..-..+|+.+.+.+..|..+--.-+..+..-...|.++
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl 188 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLL 188 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=40.72 E-value=2.2e+02 Score=30.35 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
++.++.+..++..|+.|--..+.+-+..+..+..+..+|.+--.+++.|..+++++|....-|.
T Consensus 249 K~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq 312 (391)
T KOG1850|consen 249 KQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ 312 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Done!