Query 013689
Match_columns 438
No_of_seqs 217 out of 724
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2.6E-14 8.9E-19 109.3 6.8 53 224-276 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.2 2.4E-11 8.2E-16 94.8 9.0 54 223-276 1-54 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 7.5E-11 2.6E-15 91.2 9.2 50 224-273 1-50 (61)
4 2dgc_A Protein (GCN4); basic d 99.1 7.4E-11 2.5E-15 92.5 7.0 47 230-276 15-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 3.8E-10 1.3E-14 87.6 7.5 50 224-273 1-50 (62)
6 1gd2_E Transcription factor PA 98.9 5.2E-09 1.8E-13 83.8 8.2 59 225-283 9-67 (70)
7 1ci6_A Transcription factor AT 98.8 7.8E-09 2.7E-13 80.8 8.0 59 224-289 2-60 (63)
8 1hjb_A Ccaat/enhancer binding 98.5 8.7E-07 3E-11 73.6 9.8 52 219-270 10-61 (87)
9 1gu4_A CAAT/enhancer binding p 98.4 9.5E-07 3.3E-11 72.0 9.5 54 219-272 10-63 (78)
10 3a5t_A Transcription factor MA 98.4 1.8E-08 6.3E-13 86.6 -2.4 44 221-264 34-77 (107)
11 2wt7_B Transcription factor MA 98.1 1.7E-05 5.9E-10 66.3 9.8 51 221-271 24-74 (90)
12 2oqq_A Transcription factor HY 97.0 0.0014 4.9E-08 47.7 6.1 39 244-289 2-40 (42)
13 3hnw_A Uncharacterized protein 95.7 0.081 2.8E-06 46.9 10.8 61 242-302 72-132 (138)
14 1skn_P DNA-binding domain of S 95.5 0.0064 2.2E-07 50.9 2.6 32 221-252 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 95.4 0.13 4.5E-06 42.2 10.2 43 246-288 7-49 (81)
16 1deb_A APC protein, adenomatou 94.7 0.11 3.7E-06 39.4 7.0 46 247-292 5-50 (54)
17 2jee_A YIIU; FTSZ, septum, coi 94.6 0.2 7E-06 41.1 9.0 53 246-298 21-73 (81)
18 2w6a_A ARF GTPase-activating p 93.8 0.23 7.7E-06 38.8 7.3 41 247-287 22-62 (63)
19 3a7p_A Autophagy protein 16; c 93.6 0.47 1.6E-05 43.1 10.3 37 252-288 96-132 (152)
20 1wlq_A Geminin; coiled-coil; 2 93.2 0.43 1.5E-05 39.4 8.5 51 254-308 33-83 (83)
21 3hnw_A Uncharacterized protein 92.5 0.94 3.2E-05 40.1 10.4 61 247-307 70-130 (138)
22 2dfs_A Myosin-5A; myosin-V, in 92.2 1.5 5.2E-05 49.9 14.1 29 272-300 1022-1050(1080)
23 1go4_E MAD1 (mitotic arrest de 92.1 0.38 1.3E-05 40.9 7.0 31 246-276 13-43 (100)
24 3u1c_A Tropomyosin alpha-1 cha 91.4 4.1 0.00014 34.0 12.5 52 245-296 23-74 (101)
25 3u59_A Tropomyosin beta chain; 91.1 2.3 7.9E-05 35.3 10.8 55 244-298 22-76 (101)
26 3u1c_A Tropomyosin alpha-1 cha 91.1 6 0.00021 32.9 13.9 79 232-310 17-95 (101)
27 3oja_B Anopheles plasmodium-re 90.6 1.7 5.8E-05 44.6 11.5 61 246-306 510-570 (597)
28 3u59_A Tropomyosin beta chain; 90.0 7.3 0.00025 32.2 13.9 82 229-310 14-95 (101)
29 1hjb_A Ccaat/enhancer binding 89.9 2.7 9.1E-05 34.8 9.9 40 267-306 37-76 (87)
30 1ci6_A Transcription factor AT 89.6 0.96 3.3E-05 34.9 6.6 41 263-303 20-60 (63)
31 2wt7_A Proto-oncogene protein 89.5 4.3 0.00015 31.1 10.3 38 266-303 23-60 (63)
32 1ic2_A Tropomyosin alpha chain 89.3 2.1 7.1E-05 34.2 8.7 51 254-304 8-58 (81)
33 3oja_B Anopheles plasmodium-re 89.2 6 0.00021 40.5 14.3 63 248-310 505-567 (597)
34 1t2k_D Cyclic-AMP-dependent tr 89.1 1.1 3.8E-05 34.0 6.6 37 266-302 22-58 (61)
35 3o0z_A RHO-associated protein 88.9 3.6 0.00012 37.8 11.0 56 237-294 28-83 (168)
36 2v71_A Nuclear distribution pr 88.9 10 0.00035 35.4 14.2 53 247-299 90-142 (189)
37 2v66_B Nuclear distribution pr 88.9 11 0.00036 32.5 13.9 57 246-302 36-92 (111)
38 3o0z_A RHO-associated protein 88.8 5.5 0.00019 36.6 12.1 69 225-300 70-138 (168)
39 3s9g_A Protein hexim1; cyclin 88.6 1.5 5E-05 37.4 7.5 45 248-292 40-84 (104)
40 2c9l_Y EB1, zebra, BZLF1 trans 88.0 2.5 8.6E-05 32.6 7.8 37 228-264 5-41 (63)
41 3m9b_A Proteasome-associated A 88.0 0.5 1.7E-05 45.9 4.9 46 267-312 55-100 (251)
42 3a7p_A Autophagy protein 16; c 87.9 8.9 0.0003 34.8 12.7 58 253-310 69-126 (152)
43 3cve_A Homer protein homolog 1 87.9 2.6 8.8E-05 33.9 8.2 49 248-296 3-51 (72)
44 2v4h_A NF-kappa-B essential mo 87.8 9.2 0.00032 33.0 12.1 75 229-303 29-106 (110)
45 2eqb_B RAB guanine nucleotide 87.8 3.2 0.00011 35.1 9.1 52 245-296 12-63 (97)
46 1p9i_A Cortexillin I/GCN4 hybr 87.7 0.86 2.9E-05 30.6 4.4 24 273-296 6-29 (31)
47 2v71_A Nuclear distribution pr 87.5 14 0.00047 34.5 14.2 55 252-306 88-142 (189)
48 1wle_A Seryl-tRNA synthetase; 87.5 7.1 0.00024 41.0 13.6 81 246-326 71-163 (501)
49 2wvr_A Geminin; DNA replicatio 87.4 2.6 8.9E-05 39.9 9.2 51 254-308 110-160 (209)
50 1gd2_E Transcription factor PA 87.2 1.2 4.3E-05 35.4 6.0 37 262-298 32-68 (70)
51 3m48_A General control protein 87.1 0.66 2.3E-05 32.2 3.7 27 247-273 2-28 (33)
52 3s9g_A Protein hexim1; cyclin 87.0 4 0.00014 34.8 9.2 52 263-314 34-85 (104)
53 1kd8_B GABH BLL, GCN4 acid bas 86.9 1.1 3.6E-05 31.7 4.7 30 246-275 2-31 (36)
54 3he5_A Synzip1; heterodimeric 86.9 2.4 8.1E-05 31.1 6.7 23 247-269 5-27 (49)
55 2dfs_A Myosin-5A; myosin-V, in 86.8 5.9 0.0002 45.1 13.5 13 35-47 700-712 (1080)
56 3cvf_A Homer-3, homer protein 86.6 1.6 5.4E-05 35.7 6.4 49 248-296 9-57 (79)
57 2zxx_A Geminin; coiled-coil, c 86.6 1.8 6.2E-05 35.4 6.7 44 255-298 30-73 (79)
58 3bas_A Myosin heavy chain, str 86.1 12 0.00043 30.3 12.8 53 244-296 34-86 (89)
59 2oxj_A Hybrid alpha/beta pepti 86.0 1.1 3.8E-05 31.3 4.4 27 246-272 2-28 (34)
60 1gu4_A CAAT/enhancer binding p 85.9 4.2 0.00014 32.9 8.5 32 269-300 39-70 (78)
61 3jsv_C NF-kappa-B essential mo 85.7 6 0.0002 33.3 9.6 74 229-302 7-83 (94)
62 1ses_A Seryl-tRNA synthetase; 85.2 8.2 0.00028 39.4 12.4 82 245-326 28-111 (421)
63 2dq0_A Seryl-tRNA synthetase; 84.3 14 0.00048 38.1 13.8 79 249-327 35-117 (455)
64 3vmx_A Voltage-gated hydrogen 84.2 3 0.0001 31.2 6.3 37 251-287 3-39 (48)
65 1i84_S Smooth muscle myosin he 84.1 5.8 0.0002 45.2 11.8 20 277-296 917-936 (1184)
66 1jnm_A Proto-oncogene C-JUN; B 83.7 1.2 4.3E-05 33.9 4.3 37 265-301 21-57 (62)
67 1kd8_A GABH AIV, GCN4 acid bas 83.7 1.5 5.2E-05 30.9 4.3 29 246-274 2-30 (36)
68 2kz5_A Transcription factor NF 83.4 0.099 3.4E-06 43.7 -2.1 25 221-245 63-87 (91)
69 3mq7_A Bone marrow stromal ant 83.3 5.3 0.00018 34.9 8.5 35 282-316 73-107 (121)
70 4h22_A Leucine-rich repeat fli 83.3 11 0.00038 32.2 10.3 13 220-232 6-18 (103)
71 2v66_B Nuclear distribution pr 83.1 11 0.00037 32.5 10.4 32 254-285 37-68 (111)
72 2xdj_A Uncharacterized protein 83.0 10 0.00035 30.9 9.7 42 247-288 22-63 (83)
73 3qne_A Seryl-tRNA synthetase, 82.4 16 0.00056 38.3 13.5 43 284-326 75-118 (485)
74 3c3f_A Alpha/beta peptide with 82.4 1.9 6.7E-05 30.0 4.4 28 246-273 2-29 (34)
75 3efg_A Protein SLYX homolog; x 82.2 3.4 0.00012 33.3 6.6 24 246-269 15-38 (78)
76 3vkg_A Dynein heavy chain, cyt 82.2 6 0.00021 50.0 11.6 58 251-308 2027-2084(3245)
77 4etp_A Kinesin-like protein KA 81.9 4.3 0.00015 41.2 8.7 40 246-285 11-50 (403)
78 3a2a_A Voltage-gated hydrogen 81.5 3.7 0.00013 31.6 6.0 36 251-286 10-45 (58)
79 3na7_A HP0958; flagellar bioge 81.3 17 0.00057 34.3 12.1 57 247-303 92-148 (256)
80 3iv1_A Tumor susceptibility ge 81.0 16 0.00056 29.7 10.1 61 241-301 14-74 (78)
81 3c3g_A Alpha/beta peptide with 80.6 2.5 8.5E-05 29.4 4.4 27 247-273 2-28 (33)
82 1i84_S Smooth muscle myosin he 80.4 9.8 0.00033 43.4 11.8 25 278-302 911-935 (1184)
83 3mq7_A Bone marrow stromal ant 80.3 8 0.00028 33.8 8.5 47 249-295 61-107 (121)
84 2dgc_A Protein (GCN4); basic d 80.3 2.1 7.2E-05 33.1 4.5 32 265-296 29-60 (63)
85 2oqq_A Transcription factor HY 80.2 5.5 0.00019 29.0 6.3 34 269-302 6-39 (42)
86 3ghg_A Fibrinogen alpha chain; 80.1 10 0.00036 40.4 11.0 42 263-304 114-155 (562)
87 2hy6_A General control protein 80.1 2.4 8.2E-05 29.6 4.2 28 246-273 2-29 (34)
88 1x8y_A Lamin A/C; structural p 80.0 15 0.00051 29.7 9.7 56 242-297 25-80 (86)
89 3efg_A Protein SLYX homolog; x 79.9 4.4 0.00015 32.7 6.4 50 248-297 10-59 (78)
90 3s4r_A Vimentin; alpha-helix, 79.8 19 0.00064 29.7 10.4 24 251-274 22-45 (93)
91 3he5_B Synzip2; heterodimeric 79.6 9.7 0.00033 28.1 7.5 43 261-303 5-47 (52)
92 1ic2_A Tropomyosin alpha chain 79.5 14 0.00049 29.3 9.3 56 245-300 20-75 (81)
93 2yy0_A C-MYC-binding protein; 79.4 3 0.0001 31.4 4.9 17 253-269 20-36 (53)
94 3a7o_A Autophagy protein 16; c 79.4 7 0.00024 31.5 7.3 50 245-294 25-74 (75)
95 3m91_A Proteasome-associated A 79.3 7.7 0.00026 29.2 7.1 21 249-269 13-33 (51)
96 3m91_A Proteasome-associated A 79.2 7.9 0.00027 29.1 7.2 37 270-306 13-49 (51)
97 4emc_A Monopolin complex subun 79.1 14 0.00046 34.7 10.3 63 247-309 15-84 (190)
98 1uo4_A General control protein 79.0 2.4 8.1E-05 29.6 3.9 28 246-273 2-29 (34)
99 2i1j_A Moesin; FERM, coiled-co 79.0 1.5 5.2E-05 46.5 4.4 61 247-307 337-397 (575)
100 3bas_A Myosin heavy chain, str 78.9 21 0.00071 29.0 10.3 53 248-300 31-83 (89)
101 3swf_A CGMP-gated cation chann 78.8 8.8 0.0003 31.0 7.8 49 248-299 3-51 (74)
102 1gk6_A Vimentin; intermediate 78.6 7.3 0.00025 29.6 7.0 50 247-296 2-51 (59)
103 2wq1_A General control protein 78.6 3.1 0.00011 28.9 4.4 27 247-273 2-28 (33)
104 2oa5_A Hypothetical protein BQ 78.5 5.9 0.0002 34.2 7.1 26 245-270 8-33 (110)
105 2bni_A General control protein 78.2 2.6 8.9E-05 29.5 3.9 28 246-273 2-29 (34)
106 3u06_A Protein claret segregat 77.8 5.6 0.00019 40.7 8.0 51 256-306 7-57 (412)
107 3na7_A HP0958; flagellar bioge 77.7 31 0.0011 32.5 12.6 11 252-262 104-114 (256)
108 3m9b_A Proteasome-associated A 77.3 3.1 0.0001 40.5 5.6 41 245-292 54-94 (251)
109 3swy_A Cyclic nucleotide-gated 77.2 9.5 0.00032 28.2 6.9 44 249-295 2-45 (46)
110 1gk4_A Vimentin; intermediate 77.0 26 0.00089 28.1 10.3 72 223-296 6-77 (84)
111 4h22_A Leucine-rich repeat fli 76.8 14 0.00048 31.5 8.9 19 277-295 62-80 (103)
112 2lw1_A ABC transporter ATP-bin 76.6 15 0.0005 29.7 8.7 57 244-300 21-83 (89)
113 3he4_A Synzip6; heterodimeric 76.6 1.1 3.7E-05 33.6 1.7 29 276-304 27-55 (56)
114 1nkp_B MAX protein, MYC proto- 76.5 3 0.0001 33.1 4.5 31 274-304 48-78 (83)
115 3u06_A Protein claret segregat 76.0 7.7 0.00026 39.6 8.5 51 245-295 10-60 (412)
116 3tnu_B Keratin, type II cytosk 75.8 21 0.00073 30.5 10.0 30 247-276 45-74 (129)
117 4b4t_K 26S protease regulatory 75.7 4.1 0.00014 41.7 6.4 56 254-309 37-92 (428)
118 3he5_A Synzip1; heterodimeric 75.7 14 0.00048 27.0 7.3 44 253-296 4-47 (49)
119 3m0d_C TNF receptor-associated 75.7 23 0.00077 27.3 9.2 59 243-301 4-62 (65)
120 1nkp_B MAX protein, MYC proto- 75.6 5 0.00017 31.9 5.6 14 277-290 65-78 (83)
121 3mq9_A Bone marrow stromal ant 75.6 32 0.0011 34.3 12.8 27 281-307 444-470 (471)
122 3oja_A Leucine-rich immune mol 75.5 28 0.00095 34.9 12.4 44 263-306 432-475 (487)
123 4etp_A Kinesin-like protein KA 75.2 7.9 0.00027 39.3 8.3 55 247-308 5-59 (403)
124 4emc_A Monopolin complex subun 74.6 12 0.00039 35.1 8.5 59 246-304 7-65 (190)
125 2xv5_A Lamin-A/C; structural p 74.4 18 0.00063 28.8 8.5 50 247-296 7-56 (74)
126 1wt6_A Myotonin-protein kinase 74.3 35 0.0012 28.0 10.3 57 232-298 14-70 (81)
127 3q0x_A Centriole protein; cent 73.8 16 0.00055 34.9 9.5 50 221-276 160-209 (228)
128 3tnu_A Keratin, type I cytoske 73.2 27 0.00091 30.0 10.0 24 250-273 50-73 (131)
129 3i00_A HIP-I, huntingtin-inter 72.9 18 0.00063 31.3 8.9 50 240-296 35-84 (120)
130 3oja_A Leucine-rich immune mol 72.9 26 0.00088 35.2 11.3 53 248-300 424-476 (487)
131 2yy0_A C-MYC-binding protein; 72.6 6.3 0.00021 29.6 5.1 27 261-287 21-47 (53)
132 3qh9_A Liprin-beta-2; coiled-c 72.5 30 0.001 28.4 9.4 23 285-307 52-74 (81)
133 1a93_B MAX protein, coiled coi 72.5 5 0.00017 28.1 4.1 27 266-292 7-33 (34)
134 1ik9_A DNA repair protein XRCC 72.3 24 0.00081 33.1 10.2 15 108-122 60-74 (213)
135 3ol1_A Vimentin; structural ge 72.3 39 0.0013 28.7 10.8 31 269-299 72-102 (119)
136 1uii_A Geminin; human, DNA rep 72.1 15 0.00052 30.2 7.7 33 255-287 42-74 (83)
137 1wt6_A Myotonin-protein kinase 71.8 36 0.0012 27.9 9.7 22 249-270 42-63 (81)
138 1dh3_A Transcription factor CR 71.7 3.7 0.00013 30.9 3.7 31 266-296 22-52 (55)
139 2fxo_A Myosin heavy chain, car 71.6 48 0.0016 28.4 14.4 56 248-303 65-120 (129)
140 1dip_A Delta-sleep-inducing pe 71.1 2.3 8E-05 34.5 2.6 25 262-286 18-42 (78)
141 1wle_A Seryl-tRNA synthetase; 71.0 21 0.00073 37.4 10.5 58 249-306 81-149 (501)
142 3s4r_A Vimentin; alpha-helix, 70.9 35 0.0012 28.0 9.7 32 265-296 55-86 (93)
143 1m1j_B Fibrinogen beta chain; 70.5 55 0.0019 34.2 13.4 24 283-306 171-194 (464)
144 2ve7_C Kinetochore protein NUF 70.4 6.1 0.00021 37.8 5.8 31 222-252 118-148 (250)
145 3vkg_A Dynein heavy chain, cyt 70.2 16 0.00055 46.4 10.7 77 222-298 2010-2102(3245)
146 2oxj_A Hybrid alpha/beta pepti 70.0 6.8 0.00023 27.4 4.3 28 269-296 4-31 (34)
147 2w83_C C-JUN-amino-terminal ki 69.8 19 0.00065 29.3 7.6 51 249-299 6-63 (77)
148 2oto_A M protein; helical coil 69.8 40 0.0014 29.5 10.6 31 248-278 53-83 (155)
149 1dip_A Delta-sleep-inducing pe 69.7 4.6 0.00016 32.8 4.0 22 245-266 22-43 (78)
150 1t6f_A Geminin; coiled-coil, c 69.6 8.2 0.00028 27.3 4.7 29 258-286 6-34 (37)
151 2xnx_M M protein, M1-BC1; cell 69.6 56 0.0019 29.4 11.4 67 247-313 35-113 (146)
152 2r2v_A GCN4 leucine zipper; co 68.9 7.5 0.00026 27.2 4.4 28 246-273 2-29 (34)
153 2xdj_A Uncharacterized protein 68.7 38 0.0013 27.5 9.4 49 251-299 5-53 (83)
154 2w83_C C-JUN-amino-terminal ki 68.4 47 0.0016 27.0 10.2 50 257-306 28-77 (77)
155 3q8t_A Beclin-1; autophagy, AT 68.4 49 0.0017 27.3 12.7 51 250-300 23-73 (96)
156 2ocy_A RAB guanine nucleotide 68.3 69 0.0024 28.9 13.1 33 274-306 109-141 (154)
157 3trt_A Vimentin; cytoskeleton, 68.3 39 0.0013 26.1 10.3 14 287-300 56-69 (77)
158 2ve7_C Kinetochore protein NUF 68.2 3.2 0.00011 39.8 3.3 39 262-300 144-182 (250)
159 2efr_A General control protein 68.2 45 0.0016 30.0 10.7 69 231-299 56-124 (155)
160 1joc_A EEA1, early endosomal a 67.0 14 0.00048 31.7 6.9 41 245-285 11-51 (125)
161 1joc_A EEA1, early endosomal a 66.9 36 0.0012 29.1 9.4 39 275-313 13-51 (125)
162 2wuj_A Septum site-determining 66.8 4.6 0.00016 30.5 3.3 22 273-294 34-55 (57)
163 2wt7_B Transcription factor MA 66.8 54 0.0019 27.2 10.6 53 237-296 29-85 (90)
164 2dq0_A Seryl-tRNA synthetase; 66.7 21 0.00073 36.7 9.3 59 248-306 41-102 (455)
165 2b5u_A Colicin E3; high resolu 66.6 81 0.0028 33.6 13.5 14 215-228 288-301 (551)
166 2j5u_A MREC protein; bacterial 66.1 2.8 9.6E-05 40.0 2.5 16 257-272 24-39 (255)
167 1fmh_A General control protein 65.8 12 0.0004 25.5 4.7 25 248-272 4-28 (33)
168 2q6q_A Spindle POLE BODY compo 65.6 22 0.00074 28.5 7.0 49 254-302 19-67 (74)
169 2dq3_A Seryl-tRNA synthetase; 65.0 38 0.0013 34.5 10.7 80 248-327 33-116 (425)
170 1deq_A Fibrinogen (alpha chain 64.8 22 0.00076 36.4 8.8 44 260-303 114-157 (390)
171 2fic_A Bridging integrator 1; 64.8 50 0.0017 30.2 10.7 28 263-293 183-210 (251)
172 3m48_A General control protein 64.6 6.8 0.00023 27.2 3.5 27 270-296 4-30 (33)
173 2ocy_A RAB guanine nucleotide 64.5 23 0.0008 32.0 8.0 41 277-317 105-146 (154)
174 3q8t_A Beclin-1; autophagy, AT 64.4 59 0.002 26.8 11.1 29 244-272 24-52 (96)
175 1nlw_A MAD protein, MAX dimeri 64.3 23 0.00079 28.3 7.2 20 277-296 51-70 (80)
176 1am9_A Srebp-1A, protein (ster 64.1 9.9 0.00034 30.4 5.0 68 227-298 5-75 (82)
177 3e98_A GAF domain of unknown f 63.9 16 0.00055 34.7 7.3 52 247-302 67-118 (252)
178 3tnu_A Keratin, type I cytoske 63.8 50 0.0017 28.3 9.7 50 245-294 77-126 (131)
179 3qne_A Seryl-tRNA synthetase, 63.7 30 0.001 36.3 9.8 56 251-306 46-104 (485)
180 1go4_E MAD1 (mitotic arrest de 61.9 13 0.00044 31.6 5.4 31 266-296 12-42 (100)
181 1nkp_A C-MYC, MYC proto-oncoge 61.8 30 0.001 28.1 7.5 13 244-256 22-34 (88)
182 1uix_A RHO-associated kinase; 61.8 43 0.0015 26.8 8.2 47 250-296 2-48 (71)
183 2wuj_A Septum site-determining 61.8 7.7 0.00026 29.3 3.7 30 245-274 27-56 (57)
184 3nmd_A CGMP dependent protein 61.7 27 0.00092 28.0 7.0 27 243-269 38-64 (72)
185 1am9_A Srebp-1A, protein (ster 61.7 42 0.0014 26.7 8.3 27 244-270 49-75 (82)
186 2oto_A M protein; helical coil 61.5 59 0.002 28.4 10.0 49 250-298 34-82 (155)
187 3lss_A Seryl-tRNA synthetase; 61.3 53 0.0018 34.4 11.2 39 289-327 113-152 (484)
188 3tnu_B Keratin, type II cytosk 61.3 49 0.0017 28.2 9.2 46 248-293 78-123 (129)
189 1m1j_A Fibrinogen alpha subuni 61.0 46 0.0016 35.0 10.4 46 260-305 112-157 (491)
190 2b9c_A Striated-muscle alpha t 60.7 90 0.0031 27.6 12.9 75 225-305 38-112 (147)
191 3htk_A Structural maintenance 59.5 38 0.0013 24.9 7.3 43 250-292 10-52 (60)
192 1kd8_B GABH BLL, GCN4 acid bas 59.2 16 0.00056 25.7 4.7 27 271-297 6-32 (36)
193 1nkp_A C-MYC, MYC proto-oncoge 59.1 24 0.00082 28.6 6.5 16 277-292 70-85 (88)
194 3ol1_A Vimentin; structural ge 59.1 66 0.0023 27.3 9.6 19 246-264 21-39 (119)
195 3mov_A Lamin-B1; LMNB1, B-type 59.0 76 0.0026 26.2 10.3 53 244-296 36-88 (95)
196 3ra3_B P2F; coiled coil domain 58.6 7.7 0.00026 25.5 2.7 23 277-299 4-26 (28)
197 4dk0_A Putative MACA; alpha-ha 58.2 56 0.0019 31.1 10.1 29 277-305 119-147 (369)
198 1fmh_B General control protein 58.1 16 0.00055 24.8 4.3 28 269-296 4-31 (33)
199 3c3f_A Alpha/beta peptide with 57.7 16 0.00054 25.5 4.3 27 270-296 5-31 (34)
200 1gk7_A Vimentin; intermediate 57.4 14 0.00047 26.3 4.1 28 263-290 10-37 (39)
201 3mq9_A Bone marrow stromal ant 56.9 69 0.0024 31.9 10.8 26 273-298 443-468 (471)
202 1s1c_X RHO-associated, coiled- 56.6 46 0.0016 26.6 7.5 31 249-279 3-33 (71)
203 1lwu_C Fibrinogen gamma chain; 55.8 28 0.00095 34.7 7.6 12 286-297 39-50 (323)
204 1kd8_A GABH AIV, GCN4 acid bas 55.2 17 0.00059 25.6 4.2 26 273-298 8-33 (36)
205 3c3g_A Alpha/beta peptide with 54.8 19 0.00065 25.0 4.3 27 270-296 4-30 (33)
206 3a2a_A Voltage-gated hydrogen 54.7 19 0.00065 27.7 4.8 35 273-307 11-45 (58)
207 1p9i_A Cortexillin I/GCN4 hybr 54.5 16 0.00056 24.5 3.8 26 248-273 2-27 (31)
208 1jcd_A Major outer membrane li 54.3 46 0.0016 25.0 6.8 19 247-265 6-24 (52)
209 3mov_A Lamin-B1; LMNB1, B-type 54.1 15 0.00051 30.5 4.5 26 251-276 11-36 (95)
210 1ses_A Seryl-tRNA synthetase; 53.8 30 0.001 35.2 7.7 57 250-306 40-97 (421)
211 2fxo_A Myosin heavy chain, car 53.5 1.1E+02 0.0036 26.2 14.4 38 269-306 65-102 (129)
212 3m0a_A TNF receptor-associated 51.5 75 0.0026 23.9 9.3 55 247-301 7-61 (66)
213 4ati_A MITF, microphthalmia-as 51.2 42 0.0014 28.6 7.1 27 228-254 27-53 (118)
214 2zvf_A Alanyl-tRNA synthetase; 51.1 13 0.00043 32.5 3.9 30 270-299 29-58 (171)
215 4fla_A Regulation of nuclear P 51.0 1.3E+02 0.0046 26.7 11.4 38 251-288 78-115 (152)
216 3ra3_A P1C; coiled coil domain 50.9 9.9 0.00034 25.0 2.3 21 277-297 4-24 (28)
217 3ra3_A P1C; coiled coil domain 50.7 24 0.00083 23.2 4.1 24 255-278 3-26 (28)
218 3fpp_A Macrolide-specific effl 50.7 66 0.0023 30.3 9.1 32 274-305 115-146 (341)
219 3htk_A Structural maintenance 50.3 72 0.0025 23.4 9.1 45 245-289 12-56 (60)
220 3ghg_A Fibrinogen alpha chain; 50.1 56 0.0019 34.9 9.1 9 212-220 49-57 (562)
221 4dk0_A Putative MACA; alpha-ha 49.9 98 0.0034 29.4 10.3 38 267-304 116-153 (369)
222 3lss_A Seryl-tRNA synthetase; 49.5 70 0.0024 33.5 9.7 28 279-306 109-137 (484)
223 1gk4_A Vimentin; intermediate 49.4 94 0.0032 24.8 8.5 21 255-275 4-24 (84)
224 1zme_C Proline utilization tra 49.0 15 0.0005 27.3 3.4 24 245-268 44-67 (70)
225 2e7s_A RAB guanine nucleotide 49.0 48 0.0016 29.4 7.2 51 246-296 33-83 (135)
226 2w6b_A RHO guanine nucleotide 47.9 92 0.0031 23.9 7.6 30 277-306 21-50 (56)
227 2p4v_A Transcription elongatio 47.8 55 0.0019 29.0 7.5 26 247-272 11-37 (158)
228 1fmh_A General control protein 47.6 24 0.00081 24.0 3.8 26 271-296 6-31 (33)
229 3w03_C DNA repair protein XRCC 47.5 26 0.00088 32.5 5.5 29 246-274 153-181 (184)
230 3swk_A Vimentin; cytoskeleton, 47.4 1.1E+02 0.0036 24.8 8.5 20 259-278 21-40 (86)
231 1lrz_A FEMA, factor essential 47.3 52 0.0018 32.8 8.1 59 246-305 248-306 (426)
232 1lwu_C Fibrinogen gamma chain; 46.7 44 0.0015 33.3 7.4 8 286-293 46-53 (323)
233 1hlo_A Protein (transcription 46.7 18 0.00061 28.5 3.7 59 237-295 21-79 (80)
234 1jcd_A Major outer membrane li 46.4 91 0.0031 23.4 7.7 18 288-305 26-43 (52)
235 4ath_A MITF, microphthalmia-as 46.4 53 0.0018 27.0 6.5 17 277-293 60-76 (83)
236 3nmd_A CGMP dependent protein 46.0 25 0.00087 28.2 4.5 31 262-292 36-66 (72)
237 1ik9_A DNA repair protein XRCC 45.8 1E+02 0.0035 28.8 9.4 27 245-271 139-165 (213)
238 3plt_A Sphingolipid long chain 45.2 79 0.0027 30.4 8.6 66 224-294 93-159 (234)
239 3i00_A HIP-I, huntingtin-inter 45.2 1.5E+02 0.0051 25.5 10.4 47 245-294 15-61 (120)
240 2j5u_A MREC protein; bacterial 45.1 8.6 0.0003 36.6 2.0 36 247-286 21-56 (255)
241 3iox_A AGI/II, PA; alpha helix 44.7 94 0.0032 32.9 9.7 60 247-306 36-99 (497)
242 2hy6_A General control protein 44.4 34 0.0012 23.8 4.3 26 271-296 6-31 (34)
243 2k48_A Nucleoprotein; viral pr 44.3 1.4E+02 0.0049 25.5 9.1 29 246-274 36-64 (107)
244 1grj_A GREA protein; transcrip 43.2 82 0.0028 27.8 7.9 26 247-272 11-37 (158)
245 3a5t_A Transcription factor MA 42.8 1.4 5E-05 37.7 -3.4 42 260-301 59-100 (107)
246 4ath_A MITF, microphthalmia-as 42.7 49 0.0017 27.1 5.8 32 244-275 48-79 (83)
247 3he5_B Synzip2; heterodimeric 42.6 99 0.0034 22.8 6.8 11 254-264 12-22 (52)
248 3bbp_D GRIP and coiled-coil do 42.5 22 0.00077 28.4 3.6 14 278-291 48-61 (71)
249 1m1j_C Fibrinogen gamma chain; 42.0 99 0.0034 31.7 9.3 44 263-306 88-131 (409)
250 1m1j_C Fibrinogen gamma chain; 41.9 3E+02 0.01 28.1 13.8 26 245-270 41-66 (409)
251 1ez3_A Syntaxin-1A; three heli 41.8 76 0.0026 26.0 7.1 16 283-298 91-106 (127)
252 2bni_A General control protein 41.6 26 0.0009 24.4 3.4 26 270-295 5-30 (34)
253 3vmx_A Voltage-gated hydrogen 41.5 69 0.0024 23.9 5.9 34 273-306 4-37 (48)
254 2akf_A Coronin-1A; coiled coil 41.4 53 0.0018 22.3 4.8 26 278-303 4-29 (32)
255 1x79_B RAB GTPase binding effe 41.4 1.7E+02 0.0058 25.1 9.9 12 303-314 93-104 (112)
256 2js5_A Uncharacterized protein 40.9 1.4E+02 0.0047 23.9 9.1 25 248-272 6-30 (71)
257 3oa7_A Head morphogenesis prot 40.8 86 0.0029 29.6 7.9 40 254-293 32-71 (206)
258 4b4t_K 26S protease regulatory 40.7 38 0.0013 34.6 6.0 46 248-300 45-90 (428)
259 2cly_A ATP synthase B chain, m 40.6 94 0.0032 29.3 8.2 32 254-285 124-155 (214)
260 3lay_A Zinc resistance-associa 40.6 2E+02 0.0069 26.1 10.3 21 274-294 114-134 (175)
261 3fpp_A Macrolide-specific effl 40.4 1.4E+02 0.0048 28.1 9.6 10 215-224 59-68 (341)
262 4dzn_A Coiled-coil peptide CC- 40.0 68 0.0023 21.8 5.1 23 250-272 7-29 (33)
263 3q0x_A Centriole protein; cent 39.9 1.1E+02 0.0036 29.3 8.5 48 259-306 171-218 (228)
264 2v4h_A NF-kappa-B essential mo 39.8 1.8E+02 0.0062 25.0 10.0 44 253-296 63-106 (110)
265 1a93_B MAX protein, coiled coi 39.7 49 0.0017 23.1 4.5 24 280-303 7-30 (34)
266 2lz1_A Nuclear factor erythroi 39.6 0.58 2E-05 39.1 -6.1 23 222-244 64-86 (90)
267 1uii_A Geminin; human, DNA rep 39.4 71 0.0024 26.3 6.2 28 279-306 45-72 (83)
268 3lay_A Zinc resistance-associa 39.4 73 0.0025 29.0 7.1 15 283-297 116-130 (175)
269 2f1m_A Acriflavine resistance 38.7 1.9E+02 0.0066 26.3 10.0 30 275-304 100-129 (277)
270 1uo4_A General control protein 38.6 35 0.0012 23.8 3.6 24 271-294 6-29 (34)
271 1f5n_A Interferon-induced guan 38.6 1.9E+02 0.0063 30.9 11.1 18 250-267 517-534 (592)
272 3trt_A Vimentin; cytoskeleton, 37.9 1.2E+02 0.0042 23.2 7.3 18 279-296 55-72 (77)
273 3csx_A Putative uncharacterize 37.6 1.2E+02 0.0042 24.7 7.4 10 222-231 19-28 (81)
274 1x8y_A Lamin A/C; structural p 37.4 54 0.0018 26.4 5.3 24 268-291 30-53 (86)
275 1deb_A APC protein, adenomatou 36.9 1.2E+02 0.0039 23.1 6.5 32 271-302 8-39 (54)
276 3brv_B NF-kappa-B essential mo 36.8 1.6E+02 0.0055 23.5 9.0 54 254-307 10-67 (70)
277 2ve7_A Kinetochore protein HEC 36.8 44 0.0015 32.7 5.6 30 251-280 184-213 (315)
278 2wq1_A General control protein 36.6 55 0.0019 22.7 4.3 21 274-294 8-28 (33)
279 3cl3_D NF-kappa-B essential mo 35.6 19 0.00066 31.8 2.5 19 280-298 55-73 (130)
280 4b4t_M 26S protease regulatory 35.6 36 0.0012 34.9 4.9 34 276-309 42-75 (434)
281 2l5g_B Putative uncharacterize 35.5 1.1E+02 0.0037 22.3 5.9 32 271-302 7-38 (42)
282 1hlo_A Protein (transcription 34.1 33 0.0011 27.0 3.4 22 245-266 57-78 (80)
283 2avr_X Adhesion A; antiparalle 33.9 2.4E+02 0.0081 24.6 9.2 9 274-282 72-80 (119)
284 2ve7_A Kinetochore protein HEC 33.7 33 0.0011 33.6 4.1 26 273-298 185-210 (315)
285 3mtu_A Tropomyosin alpha-1 cha 33.4 86 0.0029 24.8 5.8 39 245-283 16-54 (75)
286 2er8_A Regulatory protein Leu3 32.6 23 0.00079 26.5 2.3 21 244-264 48-68 (72)
287 3viq_B Mating-type switching p 32.5 1.9E+02 0.0063 23.8 7.7 25 248-272 4-28 (85)
288 4dzo_A Mitotic spindle assembl 32.5 83 0.0028 27.1 6.0 19 246-264 5-23 (123)
289 3w03_C DNA repair protein XRCC 32.2 89 0.003 28.9 6.5 32 245-276 145-176 (184)
290 4fi5_A Nucleoprotein; structur 31.9 2.5E+02 0.0085 24.3 9.1 14 287-300 69-82 (113)
291 1wlq_A Geminin; coiled-coil; 2 31.9 58 0.002 26.8 4.6 27 279-305 37-63 (83)
292 2f23_A Anti-cleavage anti-GREA 31.4 1.5E+02 0.0051 25.9 7.6 24 248-271 13-36 (156)
293 3ghg_C Fibrinogen gamma chain; 31.3 4.4E+02 0.015 27.1 12.1 47 261-307 86-132 (411)
294 2w6b_A RHO guanine nucleotide 31.2 1E+02 0.0035 23.6 5.5 21 249-269 14-34 (56)
295 3ra3_B P2F; coiled coil domain 30.9 39 0.0013 22.2 2.7 14 257-270 5-18 (28)
296 3thf_A Protein shroom; coiled- 30.8 3.3E+02 0.011 25.4 11.3 70 240-309 14-85 (190)
297 3rrk_A V-type ATPase 116 kDa s 30.4 2.4E+02 0.0081 27.1 9.6 44 245-288 226-270 (357)
298 1d7m_A Cortexillin I; coiled-c 30.0 2.5E+02 0.0084 23.6 9.6 56 244-299 3-58 (101)
299 3cvf_A Homer-3, homer protein 29.9 2.2E+02 0.0076 23.0 10.6 22 249-270 17-38 (79)
300 4gkw_A Spindle assembly abnorm 29.8 3.1E+02 0.01 24.6 10.6 27 287-313 98-124 (167)
301 3he4_A Synzip6; heterodimeric 29.6 72 0.0025 23.8 4.3 33 247-279 19-51 (56)
302 2zvf_A Alanyl-tRNA synthetase; 29.1 1.2E+02 0.0039 26.3 6.5 29 249-277 29-57 (171)
303 2xzr_A Immunoglobulin-binding 28.8 2.7E+02 0.0093 23.7 13.7 46 266-311 62-107 (114)
304 2i1j_A Moesin; FERM, coiled-co 28.2 33 0.0011 36.4 3.2 12 221-232 310-321 (575)
305 1oxz_A ADP-ribosylation factor 27.9 3.6E+02 0.012 24.8 10.0 26 212-237 39-64 (186)
306 1zxa_A CGMP-dependent protein 27.7 1.1E+02 0.0037 24.1 5.3 30 242-271 22-51 (67)
307 2efk_A CDC42-interacting prote 27.6 3.6E+02 0.012 24.7 10.6 12 112-123 24-35 (301)
308 3vem_A Helicase protein MOM1; 27.5 3E+02 0.01 23.8 11.0 65 222-298 40-104 (115)
309 3iox_A AGI/II, PA; alpha helix 27.5 5.2E+02 0.018 27.4 11.9 29 249-277 31-59 (497)
310 1fmh_B General control protein 26.7 1.4E+02 0.0048 20.2 5.0 28 248-275 4-31 (33)
311 1qsd_A Protein (beta-tubulin b 26.6 2.4E+02 0.0081 23.7 7.7 26 282-307 45-70 (106)
312 2ic9_A Nucleocapsid protein; h 26.6 2.9E+02 0.0098 23.2 9.1 29 247-275 7-35 (96)
313 1ytz_T Troponin T; muscle, THI 26.4 2.9E+02 0.01 23.3 8.8 60 238-297 21-87 (107)
314 2q6q_A Spindle POLE BODY compo 26.4 2.5E+02 0.0085 22.5 9.1 53 248-300 6-58 (74)
315 1m1j_B Fibrinogen beta chain; 26.1 4.4E+02 0.015 27.5 11.1 13 284-296 179-191 (464)
316 3qh9_A Liprin-beta-2; coiled-c 26.1 2.7E+02 0.0092 22.8 9.9 50 245-301 26-75 (81)
317 2eqb_B RAB guanine nucleotide 26.0 2.9E+02 0.01 23.1 12.9 17 256-272 44-60 (97)
318 2e7s_A RAB guanine nucleotide 25.9 1.5E+02 0.0052 26.2 6.5 46 260-305 68-121 (135)
319 2z5i_A TM, general control pro 25.7 1.3E+02 0.0045 22.3 5.2 35 234-268 8-42 (52)
320 1gmj_A ATPase inhibitor; coile 25.6 2.8E+02 0.0095 22.8 9.5 12 229-240 21-32 (84)
321 4gkw_A Spindle assembly abnorm 25.5 3.7E+02 0.013 24.1 10.6 20 284-303 99-118 (167)
322 3aon_A V-type sodium ATPase su 25.0 4.1E+02 0.014 24.5 10.5 62 247-308 19-80 (217)
323 2ic6_A Nucleocapsid protein; h 24.9 2.8E+02 0.0095 22.5 9.1 30 246-275 6-35 (78)
324 2xzr_A Immunoglobulin-binding 24.8 3.2E+02 0.011 23.2 12.2 31 267-297 77-107 (114)
325 4dyl_A Tyrosine-protein kinase 24.8 5.2E+02 0.018 25.6 11.5 21 236-256 321-341 (406)
326 2r2v_A GCN4 leucine zipper; co 24.6 1.1E+02 0.0039 21.2 4.3 22 273-294 8-29 (34)
327 4b6x_A AVRRPS4, avirulence pro 24.2 3E+02 0.01 22.7 8.5 21 286-306 68-88 (90)
328 2f1m_A Acriflavine resistance 23.9 4.1E+02 0.014 24.1 9.7 22 284-305 102-123 (277)
329 3sjb_C Golgi to ER traffic pro 23.8 1.8E+02 0.0061 24.3 6.3 29 277-305 53-81 (93)
330 3fx0_A NF-kappa-B essential mo 23.6 33 0.0011 28.9 1.8 38 243-280 36-76 (96)
331 1h7c_A Tubulin-specific chaper 23.5 2.5E+02 0.0085 23.6 7.2 23 284-306 49-71 (108)
332 3n7n_E Monopolin complex subun 23.1 17 0.0006 30.5 0.0 51 256-306 40-94 (95)
333 2p22_A Suppressor protein STP2 23.1 2.4E+02 0.0082 25.8 7.6 30 263-292 53-82 (174)
334 3tq2_A KE1; parallel three hel 23.0 1.9E+02 0.0065 19.9 5.3 30 263-292 5-34 (36)
335 2zqm_A Prefoldin beta subunit 22.9 2.8E+02 0.0094 22.3 7.3 30 264-293 75-104 (117)
336 1fio_A SSO1 protein; four heli 22.9 3E+02 0.01 23.9 8.1 9 287-295 84-92 (196)
337 4dci_A Uncharacterized protein 22.8 4.1E+02 0.014 23.7 10.9 26 245-270 29-54 (150)
338 3ppm_A Fatty-acid amide hydrol 22.6 65 0.0022 34.1 4.2 34 231-264 30-63 (573)
339 2yo3_A General control protein 22.6 2.9E+02 0.0099 27.0 8.4 33 278-310 228-260 (268)
340 1naf_A ADP-ribosylation factor 22.5 3.5E+02 0.012 24.2 8.4 24 213-236 24-47 (158)
341 3vp9_A General transcriptional 22.2 2.8E+02 0.0094 23.1 7.1 35 248-289 39-73 (92)
342 3tq7_B Microtubule-associated 22.2 1.6E+02 0.0053 24.0 5.5 33 245-277 8-40 (82)
343 2efl_A Formin-binding protein 22.1 4.5E+02 0.015 23.9 10.6 12 112-123 31-42 (305)
344 3ljm_A Coil Ser L9C; de novo d 22.1 1.5E+02 0.0051 19.9 4.3 21 249-269 5-25 (31)
345 2oa5_A Hypothetical protein BQ 22.1 46 0.0016 28.7 2.4 17 274-290 16-32 (110)
346 3gpv_A Transcriptional regulat 22.0 1.8E+02 0.0061 25.0 6.3 7 222-228 59-65 (148)
347 1cii_A Colicin IA; bacteriocin 22.0 7.4E+02 0.025 26.4 12.5 58 241-298 359-416 (602)
348 3c9i_A Tail needle protein GP2 22.0 5.2E+02 0.018 24.6 10.5 39 269-307 108-146 (242)
349 2aze_A Transcription factor DP 21.8 1.4E+02 0.0047 27.1 5.6 33 227-259 8-40 (155)
350 3vbb_A Seryl-tRNA synthetase, 21.6 2.8E+02 0.0095 29.3 8.7 37 285-327 110-146 (522)
351 1j1d_B Troponin T, TNT; THIN f 21.6 3.7E+02 0.013 22.7 9.9 43 256-298 46-88 (106)
352 1qvr_A CLPB protein; coiled co 21.6 6.8E+02 0.023 27.1 12.1 44 243-286 399-457 (854)
353 1g6u_A Domain swapped dimer; d 21.3 1.9E+02 0.0066 20.9 5.2 16 280-295 27-42 (48)
354 4e61_A Protein BIM1; EB1-like 21.2 1.9E+02 0.0064 24.7 6.0 35 261-295 6-40 (106)
355 4b4t_J 26S protease regulatory 20.9 99 0.0034 31.5 5.0 23 286-308 45-67 (405)
356 2lw1_A ABC transporter ATP-bin 20.8 3.2E+02 0.011 21.7 7.3 26 251-276 21-46 (89)
357 2l5g_B Putative uncharacterize 20.8 1.8E+02 0.0063 21.1 4.9 32 248-279 5-36 (42)
358 3s84_A Apolipoprotein A-IV; fo 20.5 4.5E+02 0.015 25.1 9.3 62 235-299 166-228 (273)
359 3uux_B Mitochondrial division 20.5 3.4E+02 0.012 26.2 8.3 52 218-269 149-201 (242)
360 1l8d_A DNA double-strand break 20.5 3.4E+02 0.011 21.8 11.7 75 223-297 9-102 (112)
361 3kin_B Kinesin heavy chain; mo 20.1 1.4E+02 0.0049 25.2 5.1 12 281-292 97-108 (117)
362 4ani_A Protein GRPE; chaperone 20.1 3.1E+02 0.01 25.8 7.8 46 260-305 60-105 (213)
363 3viq_A SWI5-dependent recombin 20.0 1.2E+02 0.0042 26.2 4.7 46 250-295 5-51 (122)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.50 E-value=2.6e-14 Score=109.35 Aligned_cols=53 Identities=34% Similarity=0.596 Sum_probs=49.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
||++||++||+||++||+||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998887653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.25 E-value=2.4e-11 Score=94.81 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=48.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|...+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998875554433
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.19 E-value=7.5e-11 Score=91.17 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
||.+|+++||++|++||.||++|+++|+.+|..|+.+|..|..++..|..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988885443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.14 E-value=7.4e-11 Score=92.47 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 230 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 230 lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+.+.
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44999999999999999999999999999999999888887776553
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.05 E-value=3.8e-10 Score=87.59 Aligned_cols=50 Identities=30% Similarity=0.444 Sum_probs=45.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
|+.+|..+||++|++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988875443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.88 E-value=5.2e-09 Score=83.84 Aligned_cols=59 Identities=34% Similarity=0.382 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 283 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~ 283 (438)
..||+..||.++|..|.||++|+.+||.+|..|+.++..|..++..|..++..|..||.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999888754444444444444443333
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.85 E-value=7.8e-09 Score=80.80 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 289 (438)
Q Consensus 224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv 289 (438)
|+.+++.+||.+|+|+|.||++++++|+.++..|+.+|..|..++.. |..|+..|+.-+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998874 445555555433
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.46 E-value=8.7e-07 Score=73.63 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
|..+++-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777889999999999999999999999999999999888888773
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.44 E-value=9.5e-07 Score=72.03 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
|..+.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|.
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666788999999999999999999999999999999999988887544
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.37 E-value=1.8e-08 Score=86.57 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L 264 (438)
.+.|.+||.++||.+|++||.||.++.++||.++..|..+...|
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L 77 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999997776555544433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.09 E-value=1.7e-05 Score=66.32 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
...|.+||.++||.+|+-||.||.....+||.++..|..+...|..++..+
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999988888777776666555533
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.0014 Score=47.71 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 289 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv 289 (438)
|+|+.+||.+++.|+..|.+|..++. .|..||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence 58999999999999999998888877 6678999888654
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.72 E-value=0.081 Score=46.91 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|..
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888888888888888888888888888888887777644
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.49 E-value=0.0064 Score=50.94 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELET 252 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~ 252 (438)
...|.+||..+||.+|+++|+||....+.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 46788999999999999999999998887753
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.44 E-value=0.13 Score=42.23 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
-++.||.+|.++-.....|..++..|+++...|..+|..++..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666655555555555555555555555553333
No 16
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.69 E-value=0.11 Score=39.41 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
.+.|-.||+.|+.||..|++++++-..++..|+.|-.-+|+=+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4778899999999999999999999999999888877776554444
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.58 E-value=0.2 Score=41.12 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
-+.-|+.+++.|+.+|..|..+...++.....|..||..|+.+....+.+|..
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888888999999999988888776644
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.81 E-value=0.23 Score=38.84 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
|..-|.+|.+|..-|..|..++..++.+++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44567889999999999999999999999999999999984
No 19
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.47 Score=43.06 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
.-+..|..|...|..++..++++...+..||..|-..
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555433
No 20
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=93.23 E-value=0.43 Score=39.41 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+..--.||..|..++..+......|..+|..|+ +|-.+++.+-++++||+|
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 334456888999999988888888999998887 455566667778888865
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.49 E-value=0.94 Score=40.07 Aligned_cols=61 Identities=10% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
+-.+..++..|+.+...+.+++..|..++..+..++..++.++++|+.++..++..+.++.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777777777777777777888888888888888888887777777664
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.19 E-value=1.5 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 272 NQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 272 ~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
+++...|..||.+|++++.+|...+...+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888875555444
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.06 E-value=0.38 Score=40.85 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
.+..|..+|+.|+.||..|++++..|.-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888888888777665443
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.39 E-value=4.1 Score=34.00 Aligned_cols=52 Identities=4% Similarity=0.104 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
...+.++.++..++.++..+-.++..|+.++..+..+=..+..++.....+|
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544444444444444444333333
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.13 E-value=2.3 Score=35.28 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
....+.++.++..++.++..+..++..|+.++..+..+=..+..++..+..+|..
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444444444444444333
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.06 E-value=6 Score=32.95 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
-.+.|...-..-...+.+++.+..+++.+...|.+++..+...+..+...=...+..++.-...+..+|..|..|....
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555445555556666666666666666666666666665555544444444455555555555555554444433
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.58 E-value=1.7 Score=44.57 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+..++.+.+.++.+++.+.++++...+++..+..|...|+.+++..++++..+.+.+..+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3344455555555566666666666666666666666666666666555555544444333
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.01 E-value=7.3 Score=32.23 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 229 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
|---.+.|..--..-...+.+++.+...++.+...|.+++..+...+..+...=..+...++.-+..+..+|..|..|..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666777777777777888888888887777777766666566666666666666667766655544
Q ss_pred cc
Q 013689 309 LN 310 (438)
Q Consensus 309 ln 310 (438)
..
T Consensus 94 ri 95 (101)
T 3u59_A 94 RI 95 (101)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.87 E-value=2.7 Score=34.75 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+...+.++...|+.||..|+++|+.|...+..+..++..+
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3345566777888899999999988888887777665443
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.62 E-value=0.96 Score=34.92 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.-..+...+..+...|..+|..|+.++..|+..+..+.+++
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888999999999999999999888877665
No 31
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.49 E-value=4.3 Score=31.06 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
..+..|..++..|..+|..|+.++..|+..+..+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888999999999999999998888777654
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.25 E-value=2.1 Score=34.25 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+..|+.+......++..+..++..+...+..+..++..|.+|++.+|+.++
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334443334444444444444444444444443333
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.22 E-value=6 Score=40.49 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
+.|+..+..++.+.+.+..++...+++..+...+-+.|+.++.+|++++...++.+.++...+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 556666667777777777777777777777777777777888888888888888888776654
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=89.12 E-value=1.1 Score=34.00 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
..+..|+.++..|..+|..|+.++..|+..+..+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888889999999998888887776654
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.93 E-value=3.6 Score=37.82 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 237 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 237 RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
---|.||++ .+|...+..++..+..|..++..|......|..+...|.+++..=|+
T Consensus 28 ~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 28 TAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554 66777777777777777777776666666666666666655554433
No 36
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.90 E-value=10 Score=35.37 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+..|+.++..|+..+..|..+|..|.+....++...|.+..-++.+..|+..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67778888888888888888888888888888888888888888877777654
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.89 E-value=11 Score=32.55 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+..|+.++..|+..|..|...+.+|.+....|+...|..-.-++.+..|+..+=+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 366788899999999999999999999999999999999888888888888765433
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.77 E-value=5.5 Score=36.62 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
-...+..-=+.=||.|.+-.+.+.||+.++..|+.|...++..+. .+..+|+.|...+..|.......+
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455555566777777777777777777776666666555544 677888888888887776554444
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.57 E-value=1.5 Score=37.42 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
-+||.+++.|+.||..|+..-...-.+..+|+.|=..|+++...|
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777643333333444444444444444333
No 40
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=88.04 E-value=2.5 Score=32.59 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L 264 (438)
..-+||.++|++|.|=++.|+....-...-..||..|
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 3468999999999998877766654444444444444
No 41
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.02 E-value=0.5 Score=45.94 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689 267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 312 (438)
Q Consensus 267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~ 312 (438)
++..++.++..|...|..|++.+.+|+.+|..+++.+++|..--.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~ 100 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG 100 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 3445666667777888888888888888888888888888655433
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.89 E-value=8.9 Score=34.75 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
.+..|+.|...|..++..+...+.+-...+..|+.++..|+-++.++|+...++...|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444433
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.89 E-value=2.6 Score=33.88 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..|
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999888888777877776664443
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.84 E-value=9.2 Score=33.00 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 229 MLSNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le~---EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
+..|-.+|-..=..|+..+++|..++.+++. ...-|..++......|..-...-..|..+.+.|..+|..+...+
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344456777777799999999999998888 67778999999888888777777777777777777666555443
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.76 E-value=3.2 Score=35.13 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
..+..|+.++...+.+...|..++..-+.+...++.++..|..+++.|.+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777778888888888888887665
No 46
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=87.66 E-value=0.86 Score=30.63 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.-+..|+.||+.||+++++|-+|+
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578899999999999997775
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.52 E-value=14 Score=34.46 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.++..|+.+...|+.....+..++..|+..|..|......+...+.-.+......
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555555555555555555566666555555555544444444444333
No 48
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=87.50 E-value=7.1 Score=40.98 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhh
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----------NNRILKADIETLRAKVKMAEETVKRVT-GLNPLL 313 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~-----------EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l 313 (438)
.+.+|..+...|+.+-..|+.+...+.+++..+.. +-..|++++.+|..+++.+++..+.+. .++.++
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433221 223566666666666666665555542 334444
Q ss_pred hhccCCCCCCCCC
Q 013689 314 LARSDVPGVGMPL 326 (438)
Q Consensus 314 ~~~~~~~~~~~p~ 326 (438)
..+.+++.-..|.
T Consensus 151 ~~iPN~~~~~vP~ 163 (501)
T 1wle_A 151 LRLPNQTHPDVPV 163 (501)
T ss_dssp TTSCCCCCTTCCC
T ss_pred HhCCCCCCCCCCC
Confidence 4444444444444
No 49
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=87.42 E-value=2.6 Score=39.87 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+..--.||..|..+|..+......|..+|..|+.=++.+ +.+.+++++|.+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~----q~la~vi~~l~~ 160 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV----QYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 334456899999999988888888889998888655554 445556677754
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.15 E-value=1.2 Score=35.35 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..|..++..+...+..+..||..|+.++..|+.++..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566788888888888888877653
No 51
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.09 E-value=0.66 Score=32.25 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788888887777777777766553
No 52
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.02 E-value=4 Score=34.77 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL 314 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~ 314 (438)
.|.++.-.|..++..++.||+.|+......-+++..++..|.||+..|+.|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666667777766666666666666666666666665543
No 53
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.87 E-value=1.1 Score=31.74 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
++..||.+|+.|-.+|+.|..++..|+..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 466788888887777777777776665433
No 54
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.86 E-value=2.4 Score=31.05 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~ 269 (438)
+..||.+|..|+.||..|+++.-
T Consensus 5 vaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcc
Confidence 56788899999999998887753
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.79 E-value=5.9 Score=45.14 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=7.1
Q ss_pred chhHHHHHHhhhh
Q 013689 35 SEWELEKFLQEVT 47 (438)
Q Consensus 35 SEW~FerfLeE~~ 47 (438)
.-|.|+.|++--.
T Consensus 700 ~R~~~~eF~~RY~ 712 (1080)
T 2dfs_A 700 SRWTYQEFFSRYR 712 (1080)
T ss_dssp EEEEHHHHHHHHT
T ss_pred chhhHHHHHHHHH
Confidence 3456666665543
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.61 E-value=1.6 Score=35.67 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999988888877777777776664443
No 57
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=86.58 E-value=1.8 Score=35.39 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
..--.||..|..+++.+...+..|..||+.|+.=+...+.-+.+
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laev 73 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446899999999999999999999999998666665544433
No 58
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.09 E-value=12 Score=30.33 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446677777777777777777777777777777777777777777665554
No 59
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.97 E-value=1.1 Score=31.30 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
++..||.+|..|-.+|+.|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456777777777777777766666554
No 60
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.91 E-value=4.2 Score=32.91 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..+.+++..|..||..|+.+|..|+..+..+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777766665554433
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=85.68 E-value=6 Score=33.31 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=58.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 229 MLSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le---~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+..|..+|-..=..|+..+++|...+.+++ ..+.-|..++......|..-...-..|..+.+.|..+|..+...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344556677777779999999999888888 67777999999999999888888888888888887776665543
No 62
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=85.20 E-value=8.2 Score=39.37 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCC
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV 322 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-~~EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~ 322 (438)
..+.+|..+...+..+-..|+.+...+.+++... ..+-..|++++..|..+++.+++..+.+. .++.++..+.+++.-
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4444555555555555555555555554443210 01224566666666666666665555542 333444444444444
Q ss_pred CCCC
Q 013689 323 GMPL 326 (438)
Q Consensus 323 ~~p~ 326 (438)
+.|.
T Consensus 108 ~vp~ 111 (421)
T 1ses_A 108 GAPV 111 (421)
T ss_dssp TSCS
T ss_pred CCCC
Confidence 4444
No 63
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=84.26 E-value=14 Score=38.11 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCC
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGM 324 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~---EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~ 324 (438)
+|..+...|..+-..|+.+...+.+++..+.. +-..|++++..|..+++.+++..+.+. .++.++..+.+++.-..
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~v 114 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSV 114 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34444444444444444444444443333211 123455555555555555555544432 23344444444444444
Q ss_pred CCC
Q 013689 325 PLV 327 (438)
Q Consensus 325 p~~ 327 (438)
|.+
T Consensus 115 P~g 117 (455)
T 2dq0_A 115 PVG 117 (455)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 64
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=84.16 E-value=3 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
+.++..|+.-|..|..+++.|+..+..++.|+.+|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5678888888888888888888888887777766653
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.11 E-value=5.8 Score=45.23 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl 296 (438)
.+..+...|+.++.+|..++
T Consensus 917 ~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 66
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.71 E-value=1.2 Score=33.90 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
...+..|..++..|..+|..|+.++..|+..+..+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888999998888888877655443
No 67
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.66 E-value=1.5 Score=30.94 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
++..||.+|..|..+|+.|..++..|+..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35678888888887777777777666543
No 68
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=83.41 E-value=0.099 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQA 245 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~ 245 (438)
.-.|.+||..+||.+|+++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578899999999999999999853
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.34 E-value=5.3 Score=34.89 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Q 013689 282 NRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 316 (438)
Q Consensus 282 N~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~ 316 (438)
=..|+-+|.+|.++|+.++..|.|+..-|..++..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 44455666666666666666677777777665554
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.33 E-value=11 Score=32.18 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHh
Q 013689 220 SVDDKRARRMLSN 232 (438)
Q Consensus 220 ~~d~KR~RR~lsN 232 (438)
..++|=+|-|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3467778889998
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.06 E-value=11 Score=32.48 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
+..|+.|...|+.....+..++..|+..|.-|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 33444444444444444444444444444444
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.95 E-value=10 Score=30.94 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
+-+|..++..|+.|...|+-+++.+..++..+....+.+-.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444444444433333
No 73
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=82.39 E-value=16 Score=38.27 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCCCC
Q 013689 284 ILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPL 326 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~p~ 326 (438)
.|++++.+|..+++.+++.++.+. .++.++..+.+++.-..|.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 118 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVD 118 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 344555555555555444444332 2333343334433334443
No 74
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.37 E-value=1.9 Score=30.03 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4567777777777777777666665543
No 75
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.23 E-value=3.4 Score=33.26 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
++.+||.++..++.-...|...+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~ 38 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALA 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555555544444
No 76
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.20 E-value=6 Score=50.03 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
+.++..++.+...|..++..|+.+|..+..|-..|+.+++..+.||..|+..+.-|.+
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344445555556666666777777777777777777777777777777766655533
No 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.89 E-value=4.3 Score=41.25 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
.+++|+.++..|+.+...|..++..+.+++...+..-+.|
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333333333
No 78
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.50 E-value=3.7 Score=31.63 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
|.++..|+.-|-+|..+++.|+.++...+.|+.+|+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776666666666655
No 79
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.30 E-value=17 Score=34.28 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
++.|+.++..++.++..|..++..+..+...+..+=..+++++..++..+..++..+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555444333
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.96 E-value=16 Score=29.67 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+|=++.+..-..++..|+.-...|..--..+...+..|..|-..|...++.|+.|.+.++.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334667777778888888888888777778888888889999999999999888877654
No 81
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.59 E-value=2.5 Score=29.36 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777777777777777666665543
No 82
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.38 E-value=9.8 Score=43.40 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 278 SAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 278 L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+..+-..|..++..|+.++..+++.
T Consensus 911 ~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 911 AEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 83
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.28 E-value=8 Score=33.78 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
.|+.+..+-....+.|..+|..|++++..+..|=.+||.+.+.|..+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 34444444344455555555555555556666656666665555433
No 84
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.26 E-value=2.1 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
...+..|..+...|..+|..|+.++..|+..|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788899999999999987665
No 85
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.21 E-value=5.5 Score=29.02 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
.+|..+...++..|.+|...+.+|...-.|+..+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444455555555555555555555554444
No 86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.13 E-value=10 Score=40.37 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.|+++++.|++++..-...=++|+.-|++++.+++.+|-.|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777778889999999988888885554
No 87
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.11 E-value=2.4 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888877777777777766554
No 88
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.98 E-value=15 Score=29.73 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
|-...++++...+..|+.+...++.++....+.|..|..=.-.|-.+|.+.|+-|.
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44557788888999999999999999999999999999999999999999876553
No 89
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.85 E-value=4.4 Score=32.65 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.+|+.++..|+....-+..-++.|++....-..+-..|+.++..|..|++
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877777776665555555555555555544443
No 90
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.81 E-value=19 Score=29.70 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk 274 (438)
-.+|..|+.+|..|..++..+.++
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677777777777666665543
No 91
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.56 E-value=9.7 Score=28.15 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
|.-|++++..|......|+.+...|..-+..||..+..+|..|
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666677776666666554
No 92
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.47 E-value=14 Score=29.31 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
..++.++.++...+..+..+..++..|+.++..+..+=..+..++.....+|..++
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555566665555555555555555555555555554443
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.38 E-value=3 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~ 269 (438)
.|..|+.||..|+.++.
T Consensus 20 d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 94
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=79.37 E-value=7 Score=31.51 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
.+|..-+.++..|+....-=.+-.+.|+-.+-.+..||..|+.++..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 44555556666666665555566677777788889999999998888754
No 95
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.34 E-value=7.7 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~ 269 (438)
+|..++..|...|..|...+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~ 33 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK 33 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 96
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.25 E-value=7.9 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.++.+...|...|..|-.-+.+-|.++..+.+.|++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555555555555555554
No 97
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.09 E-value=14 Score=34.67 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI-------ETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv-------e~Lrakl~maE~~v~Rl~~l 309 (438)
|+.-..-|..|..||..|..++....++...|..+=..|++++ ..-+.-+...+++..-|+|+
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence 3333344555555555555555543333333333333333222 22223333345555556665
No 98
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=79.02 E-value=2.4 Score=29.65 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888888888887777776654
No 99
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.97 E-value=1.5 Score=46.49 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
..+|+.++.+++.+.......|...++....|..+-++...+.+.|.++...+|++..||.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999988888888888888888888888888888877777777764
No 100
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.85 E-value=21 Score=29.01 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
...+.....|+..+..|..+..+|..++..+..-...|.++-..|..+|+.++
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555544
No 101
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.83 E-value=8.8 Score=31.01 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
++||.+|..|+.-...|..++..|...|. .-...||+.+..|..+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 56888888888877777777776655443 44567888888888777653
No 102
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=78.63 E-value=7.3 Score=29.59 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+.++..++..|+.+...++.++....+.|..|..=.-.|-.+|.+.|+-|
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677788888888888888888888899999998888999999987554
No 103
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=78.59 E-value=3.1 Score=28.86 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+..||.+|+.|-.+|..|..++..++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888877777777777766553
No 104
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=78.50 E-value=5.9 Score=34.21 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
.-+++|..++.+|+.||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999973
No 105
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=78.22 E-value=2.6 Score=29.46 Aligned_cols=28 Identities=7% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4567788888777777777777766554
No 106
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.76 E-value=5.6 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.|+.|...|++++..+.++...+..++..|++++.+...+.+.+..++..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444444444444333333333333333
No 107
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.66 E-value=31 Score=32.45 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 013689 252 TQAGQLRAEHS 262 (438)
Q Consensus 252 ~qV~~Le~EN~ 262 (438)
.++..|+.+..
T Consensus 104 ~~i~~lE~eil 114 (256)
T 3na7_A 104 ERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=77.29 E-value=3.1 Score=40.46 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
..+.+|+.++..|...|..|...+.. +..|...||.+++.|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~-------ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKE-------ARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 34556666666666666666665554 444444455555554
No 109
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.16 E-value=9.5 Score=28.19 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
+||.+|..|+.--..|..++..|-.+|. .-...||+.+..|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 5777787777777777766665554443 3445677777776544
No 110
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=77.04 E-value=26 Score=28.06 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.|.++.-+-++.. ....|-...+.++..++..|+.+...++.++....+.|..|..=.-.|-.+|.+.|+-|
T Consensus 6 l~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 6 LKGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444332 34444556778889999999999999999999999999999998888999999987554
No 111
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.84 E-value=14 Score=31.52 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAK 295 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrak 295 (438)
.+......|+.++..|+..
T Consensus 62 ~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 62 REKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333
No 112
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.63 E-value=15 Score=29.67 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~------qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
|..|+.|+.++..|+.+...|..++.+-. .++..+..+-..|..+++.+..+=-.++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999987521 3444555555556666666555443333
No 113
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.58 E-value=1.1 Score=33.62 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 276 DESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
..|+.+|..|..++..|...+.-+|..|.
T Consensus 27 arlendnanlekdianlekdianlerdva 55 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIANLERDVA 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhhc
Confidence 35566777777777777666666665543
No 114
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.46 E-value=3 Score=33.15 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
.+..|..++..|+.+++.|+.+...++..+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555554444433
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.01 E-value=7.7 Score=39.64 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
..+.+|.+++.+|+.++..+..++..+.+++...+.+.+.|--++++|+..
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666666667777777777777777777666666666666666666543
No 116
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.80 E-value=21 Score=30.49 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
+..|+.++..|+..+..|...+.++.++|.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665555543
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.74 E-value=4.1 Score=41.72 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
...|...+..|..++..+++++..|..|+..|+.++..|+.++...++.++++...
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455556666666777777777777778888888888888888888888887653
No 118
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=75.70 E-value=14 Score=27.02 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
-|.+|+.|..+|..+.+.+..+......--.-|..++..||.|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 36677777777766666655544333332333445555555443
No 119
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=75.65 E-value=23 Score=27.29 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
|..-+.+||.++..++.--..+..+++.+.-....+..++..=+..++.|..|+...+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 34456777777777776666555555555544444444444445666667666655543
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.56 E-value=5 Score=31.88 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIE 290 (438)
Q Consensus 277 ~L~~EN~~Lraqve 290 (438)
.|..+|..|++++.
T Consensus 65 ~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 65 DLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 121
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.55 E-value=32 Score=34.31 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 281 NNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 281 EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
.-.+|..++.+|.++|+.++..|+|+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777777777764
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.53 E-value=28 Score=34.93 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+.+.....+++...+..||..|+..++++..++..+.+..+-+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 34444444455555566666666666666666666655554443
No 123
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.17 E-value=7.9 Score=39.28 Aligned_cols=55 Identities=9% Similarity=0.216 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
++.|+.++..|+.+..+|.+++. .+..+++.|++++.+.+.+.+.+...+..+.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIK-------DTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555555555554 55555556655555544444444555555543
No 124
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.56 E-value=12 Score=35.14 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
|-.-++.|+..-....+.|..++..|.+++.....|+..|+.+++.|+.++...++...
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 44556777777777888999999999999999999999999999999998876554443
No 125
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=74.36 E-value=18 Score=28.81 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.+++...+..|+.+...++.+++...+.|..|..=.-.|-.+|.+.|+.|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777788888888888888998887544
No 126
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.29 E-value=35 Score=28.00 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
|-.||-.+=-|-|+- +..++...+..|..+.++|. ..+..|+.|..+++.|+.++..
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556665555554443 33445666666666666665 5556666666666666655544
No 127
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=73.78 E-value=16 Score=34.89 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
..+..+|+-+..|-.+-+ +.+..|+.++++.+.|+.++..++...+++..
T Consensus 160 asde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp CCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777665433 23455566666665555555555554444433
No 128
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.22 E-value=27 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~q 273 (438)
|+.++..|+..+..|...+.++.+
T Consensus 50 L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 129
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.94 E-value=18 Score=31.25 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+..-+.++.+|+.+|..|+.|... -+.....+..||..|+.+++.|+...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e-------~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE-------QQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666666665555544 44445577889999999999885443
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.89 E-value=26 Score=35.20 Aligned_cols=53 Identities=8% Similarity=-0.025 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.++|.+...++.+......+++.+.++...+.-+..++..++.+-+++++.|.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 33444444455555555555555555555556666666666666666665554
No 131
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.59 E-value=6.3 Score=29.63 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
...|+.++..|++++..|..++..|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 132
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.52 E-value=30 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013689 285 LKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 285 Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
-|+++..|+.+|...+..+.|+.
T Consensus 52 TK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 52 TKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 34777777777777777777764
No 133
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=72.51 E-value=5 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
.++...++....+..+|..|.+|+..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 333344444445555555555555443
No 134
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=72.35 E-value=24 Score=33.15 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=10.7
Q ss_pred CCChHHHHHHHHhhh
Q 013689 108 PVDSDEYRAYLKTKL 122 (438)
Q Consensus 108 ~~Dp~~y~a~Lk~kL 122 (438)
.+..++|-+.|+.=|
T Consensus 60 ~~~~eey~~~l~~aL 74 (213)
T 1ik9_A 60 AMEKGKYVGELRKAL 74 (213)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 456778888887655
No 135
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.31 E-value=39 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
..+++.+..+..-...|..+++.|+..|..+
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444445555555444443
No 136
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=72.13 E-value=15 Score=30.21 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra 287 (438)
..--.||..|..++..+......+..+|..|+.
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888888877655555555555555543
No 137
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.81 E-value=36 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~ 270 (438)
.++.++...+..|..|..++..
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 138
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.65 E-value=3.7 Score=30.89 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
..+..|..+...|..||..|+.++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777788899999999998886543
No 139
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.56 E-value=48 Score=28.38 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.+.+.++..|......|..++..+..++......|..|.+.-..|...+..++..+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555554444444444444433
No 140
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.13 E-value=2.3 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
..|+.+|.+|..+...|+.||..||
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666665
No 141
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.02 E-value=21 Score=37.37 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQ-----------KYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~q-----------k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+|..+++.|+.+...+.+++..+.. ....|..+=+.|+.++.+|.+++..+++.+..+
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554332 344677777888888888888888877666553
No 142
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.88 E-value=35 Score=28.04 Aligned_cols=32 Identities=6% Similarity=0.243 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 265 LKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
...|..|+.++..+..+|..|..++..|+..+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665554443
No 143
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.47 E-value=55 Score=34.22 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 283 RILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 283 ~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+.|+..++.|+.||..++..+..+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887777766543
No 144
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.43 E-value=6.1 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELET 252 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~ 252 (438)
+.||.+|.++==.-=-|-|.-|..-++++-.
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~ 148 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLW 148 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999877544444455444444433333
No 145
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.15 E-value=16 Score=46.37 Aligned_cols=77 Identities=10% Similarity=0.180 Sum_probs=47.0
Q ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 013689 222 DDKRAR--RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ--------------KYDESAVNNRIL 285 (438)
Q Consensus 222 d~KR~R--R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q--------------k~~~L~~EN~~L 285 (438)
++||.+ ....+-+.|+..-..+++.|.+|+.+++.|+.+-+.+..+.+.++. -...|..|+.+-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 444443 5566666677777778888888888888877766554444333333 233455566666
Q ss_pred HHHHHHHHHHHHH
Q 013689 286 KADIETLRAKVKM 298 (438)
Q Consensus 286 raqve~Lrakl~m 298 (438)
.+++..|..++..
T Consensus 2090 ~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2090 EQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555433
No 146
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=69.98 E-value=6.8 Score=27.36 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
..|..+...|..+|..|..++..|+.-|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455566677778888888887776544
No 147
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=69.79 E-value=19 Score=29.30 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLT-------DVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~-------~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.+-.+|..|-.||.+|...-. +|..+..+|..|+..|+.++..++.-....
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777665433 345566677777777777776665443333
No 148
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=69.78 E-value=40 Score=29.53 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 278 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L 278 (438)
.+|+.++..|+.+|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888887777777777555
No 149
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.73 E-value=4.6 Score=32.81 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLK 266 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~ 266 (438)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665544
No 150
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.65 E-value=8.2 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 258 RAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 258 e~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
-.||.+|.+.++.-.+++..|..+|..|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35888999999888888888888888775
No 151
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=69.61 E-value=56 Score=29.41 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 013689 247 LNELETQAGQLRAEHSSLLKGL------------TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 313 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el------------~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l 313 (438)
+.+|+.+...|+.+++.+.... ..+.+.+.........+.+++..|++++..++...+-+...|.|.
T Consensus 35 ~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIs 113 (146)
T 2xnx_M 35 ALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3456666666666665554443 555555566666666677777777777777776666676666554
No 152
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=68.91 E-value=7.5 Score=27.17 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
++..||.+|+.|-.++..|..++..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567777777777777777777665553
No 153
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.75 E-value=38 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+.+|..|+........-+..|..++..+..|.+.||-+++.+..++..+
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444443323333334455555555555555555555555555443
No 154
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=68.42 E-value=47 Score=27.02 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 257 Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
|..-...|..++..|.-....|..|+..+++-...|+.+++.+|+..+|+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344457777777777777777777777777777888887777776653
No 155
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.37 E-value=49 Score=27.28 Aligned_cols=51 Identities=6% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
|..++..|+.+...|..+|..+......+..+-...-.+...++.++-..+
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333333333333333
No 156
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.29 E-value=69 Score=28.93 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
....+...|..|+.++.+-+..|...+..+..|
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555554444
No 157
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=68.25 E-value=39 Score=26.10 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 013689 287 ADIETLRAKVKMAE 300 (438)
Q Consensus 287 aqve~Lrakl~maE 300 (438)
.++.+||..++.++
T Consensus 56 ~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 56 QESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 158
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=68.22 E-value=3.2 Score=39.79 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.++..+.+.+..++..+..||+.|+++++.|++++...+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555555566667777777777777777765544
No 159
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.20 E-value=45 Score=30.04 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.|..|--.+=.+-.+..+.++.++..|+......-.+.....+....|..+...|..++..-..+.+..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555555555555555555555555544444444443333
No 160
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.02 E-value=14 Score=31.68 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
+..-..|.+|..|+.++.+|+.++........++..+|..|
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 33444455556666666666655555444444444444333
No 161
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.95 E-value=36 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 013689 275 YDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 313 (438)
Q Consensus 275 ~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l 313 (438)
....+.|...|+.++.+|+.+|...+.....+...|..|
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 334444555555555555555555544444444344333
No 162
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.81 E-value=4.6 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lra 294 (438)
+.|..+..||..|+.++..|..
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555443
No 163
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=66.80 E-value=54 Score=27.18 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 237 RRSRRRKQAHLNELE----TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 237 RRSR~RKq~~leeLE----~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+|.+.+-.-|...=- .++..|+.++..|..+++ .|..||..+..++..++.++
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~-------~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVE-------QLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 455555555544332 234455555555555555 44445555555555554443
No 164
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=66.70 E-value=21 Score=36.75 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~q---k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..|..+++.|+.+...+.+++..+.. ....|..+=+.|+.++.+|..+++.+++.+..+
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665432 345777788888888888888888888776654
No 165
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=66.63 E-value=81 Score=33.60 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=7.8
Q ss_pred ccCCCchHHHHHHH
Q 013689 215 IEGLDSVDDKRARR 228 (438)
Q Consensus 215 ~~~~d~~d~KR~RR 228 (438)
...+++.+.|++.+
T Consensus 288 s~ilt~~elkqrqe 301 (551)
T 2b5u_A 288 SDVLSPDQVKQRQD 301 (551)
T ss_dssp EECCCHHHHHHHHH
T ss_pred eecCCHHHHHHHHH
Confidence 45566666655443
No 166
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.07 E-value=2.8 Score=40.04 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTDVN 272 (438)
Q Consensus 257 Le~EN~~L~~el~~l~ 272 (438)
|..||+.|++++..|+
T Consensus 24 l~~eN~~Lk~e~~~l~ 39 (255)
T 2j5u_A 24 TYTENQHLKERLEELA 39 (255)
T ss_dssp --CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544444
No 167
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.79 E-value=12 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
..||.+|.+.+.||-+|.+++..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455556655555555555554443
No 168
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=65.56 E-value=22 Score=28.55 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+..|..-..+|+.+|....+-...|+.++..++..+..|..++..+..+
T Consensus 19 I~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~ 67 (74)
T 2q6q_A 19 IFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANST 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchh
Confidence 3333334444555555555555555666666666666665554443333
No 169
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=65.01 E-value=38 Score=34.47 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCC
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVG 323 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~---EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~ 323 (438)
.+|..+...++.+-..|+.+...+.+++..+.. +-..|++++..|..+++.+++..+.+. .++.++..+.+++.-.
T Consensus 33 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 112 (425)
T 2dq3_A 33 LELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPS 112 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 334444444444444444444444443332110 112344444444444444444433332 2333444445554445
Q ss_pred CCCC
Q 013689 324 MPLV 327 (438)
Q Consensus 324 ~p~~ 327 (438)
.|.+
T Consensus 113 vp~g 116 (425)
T 2dq3_A 113 VPVG 116 (425)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5554
No 170
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.83 E-value=22 Score=36.45 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.+..|++++..|+++...-...=++|+..|+.++.+++.+|..|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777666677788888888888888887665
No 171
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=64.82 E-value=50 Score=30.23 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
....+++..++.|..+ |..|+.++..|.
T Consensus 183 kae~el~~ak~~ye~l---n~~L~~eLp~l~ 210 (251)
T 2fic_A 183 KAEEELIKAQKVFEEM---NVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455566666666544 777887777763
No 172
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=64.57 E-value=6.8 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.|..+..+|..+|..|..++..|+.-|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345566677778888888877776443
No 173
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.53 E-value=23 Score=32.00 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhcc
Q 013689 277 ESAVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARS 317 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~ 317 (438)
....+-..+..++..|+.+++..+..++++. .+..+-..+.
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777778888887777777653 3344433333
No 174
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.44 E-value=59 Score=26.79 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
.+.|.+|+.+-..|..+...+..+...+.
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444333
No 175
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.26 E-value=23 Score=28.32 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl 296 (438)
.|..++..|..+++.|+.+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 176
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.11 E-value=9.9 Score=30.37 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 227 RRMLSNRESARRSRRRKQAHLNELETQAGQL---RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 227 RR~lsNRESARRSR~RKq~~leeLE~qV~~L---e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.|+...-.+-|+.|.+=...+.+|..-|-.. ...-.-| ....+....|..++..|+.+.+.|+.+++.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL----~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVL----RKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666667777877766542 1111222 333344556666677777777777665543
No 177
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=63.92 E-value=16 Score=34.75 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
+.=.|.|+..|+.+|..|..++..|. ....+|..+-.++..|..+|-.+++.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a~sl 118 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDATSL 118 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 44556778888888888888887665 56789999999999988777665433
No 178
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.82 E-value=50 Score=28.29 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
..+.++..++..|+.+...++.++....+.|..|..=.-.|..+|.+.|.
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666554
No 179
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.71 E-value=30 Score=36.29 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~q---k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..+++.|+.+...+.+++..+.. ....|..+=+.|+.++.+|..++..+++.+..+
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544332 245677888899999999999999888777553
No 180
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.89 E-value=13 Score=31.55 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.++..+++++..|..||..|+.++..|..+|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777788888888888888887665
No 181
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.83 E-value=30 Score=28.07 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQ 256 (438)
Q Consensus 244 q~~leeLE~qV~~ 256 (438)
...+..|...|-.
T Consensus 22 n~~f~~Lr~~vP~ 34 (88)
T 1nkp_A 22 KRSFFALRDQIPE 34 (88)
T ss_dssp HHHHHHHHTTCGG
T ss_pred HHHHHHHHHHCCC
Confidence 3445555544443
No 182
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=61.80 E-value=43 Score=26.77 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|...|..|..|+..|..++..+++.+..+..+-.........|+.+|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888877766643333223333444333
No 183
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.80 E-value=7.7 Score=29.27 Aligned_cols=30 Identities=7% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
++|+.+...+..|..||..|+.++..++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888888888888888888877654
No 184
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.70 E-value=27 Score=28.05 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
|...+.+|+.++.+.+.+...|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 185
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=61.67 E-value=42 Score=26.65 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
-.|+..|+.++..|+.|+..|..++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777777766653
No 186
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.46 E-value=59 Score=28.43 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
|..+...|..+...+...+..+..++..|..+|..|+..+..++.+...
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~ 82 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455555555666666666555555544433
No 187
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=61.34 E-value=53 Score=34.40 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCCCCC
Q 013689 289 IETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPLV 327 (438)
Q Consensus 289 ve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~p~~ 327 (438)
+..|..+++.+++..+.+. .++.++..+.+++.-..|.+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g 152 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIA 152 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 4444444444444443332 23333444444444444443
No 188
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.29 E-value=49 Score=28.19 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
.++..++..|+.+...++.++....+.|..|..=.-.|..+|.+.|
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555444555555444444444444443
No 189
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.97 E-value=46 Score=35.03 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
....|+.++..|+++...-...=++||..|+.++.+++.+|..|+-
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888777777788999999999999999876654
No 190
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.66 E-value=90 Score=27.63 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
|.++.+-||.-+-- ..++.|+.+++..+.--..--.++..+.+++..+..+-..-...++....++..+++.++
T Consensus 38 R~~k~lE~r~~~de------Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 38 RGMKVIESRAQKDE------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655332 345666666666655555555555555555555555555555566666666666665544
Q ss_pred H
Q 013689 305 R 305 (438)
Q Consensus 305 R 305 (438)
-
T Consensus 112 ~ 112 (147)
T 2b9c_A 112 T 112 (147)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=59.54 E-value=38 Score=24.90 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
|+..+..+..+-..+..++..+..++..+..+=...+..+..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444443433434333333344444444
No 192
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=59.22 E-value=16 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
|..+..+|..+|..|..++..|+..+.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 334444556666666666666665553
No 193
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.15 E-value=24 Score=28.62 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETL 292 (438)
Q Consensus 277 ~L~~EN~~Lraqve~L 292 (438)
.|..+|..|+.+++.|
T Consensus 70 ~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 70 LLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445666666666555
No 194
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.06 E-value=66 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L 264 (438)
++.+|..++..+..+|..|
T Consensus 21 ~I~~LR~qid~~~~e~a~l 39 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARV 39 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 195
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=58.96 E-value=76 Score=26.21 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
...+..+...+..|+.+...++.++....+.|..|..-.-.|..+|.+.|.-|
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888877888888887778888888876544
No 196
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.62 E-value=7.7 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.|...|..|++++..|.-.+..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34456666666666665555443
No 197
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.23 E-value=56 Score=31.15 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.+..+-..+++++..++++++.++..++.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555544433
No 198
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=58.11 E-value=16 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+.|..+.+.|...|-.-++.++.||.|+
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444455567777777788888887765
No 199
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.71 E-value=16 Score=25.50 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.|..+...|..+|..|..++..|+.-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555567777777777777776543
No 200
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=57.44 E-value=14 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIE 290 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve 290 (438)
.|-.++.....+...|+.+|+.|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566677777777776654
No 201
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.86 E-value=69 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+..+++.|=..|.++++.++++++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 202
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=56.61 E-value=46 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
+|...|..|..|+..|..++..+++.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999998888888877765
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.77 E-value=28 Score=34.74 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013689 286 KADIETLRAKVK 297 (438)
Q Consensus 286 raqve~Lrakl~ 297 (438)
+.+|.+|..+|.
T Consensus 39 ~~~i~~l~~~i~ 50 (323)
T 1lwu_C 39 QQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 204
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.19 E-value=17 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+...|..+|..|..++..|+.-|..
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34445556666666666666655543
No 205
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=54.78 E-value=19 Score=24.96 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
.|..+..+|..+|..|..++..|+.-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555567777777777777776543
No 206
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=54.71 E-value=19 Score=27.71 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
++...|..-|-.|-++++.|...+...|+.+.||.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666655553
No 207
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=54.47 E-value=16 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQ 273 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~q 273 (438)
+.|..-+..|+.||.+|+.+++.+-.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888876543
No 208
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.27 E-value=46 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLL 265 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~ 265 (438)
+++|..+|..|..+...|.
T Consensus 6 i~~Lss~V~~L~~kVdqLs 24 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQAS 24 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 209
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=54.14 E-value=15 Score=30.52 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
+.++..|+.+|..|..++.++...|.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~ 36 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLA 36 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 210
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=53.80 E-value=30 Score=35.21 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTD-VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~-l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
|..+++.|+.+...+.+++.. -.+....|..+=+.|+.++.+|..++..+++.+..+
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555542 113345667777788888888888888877766643
No 211
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.53 E-value=1.1e+02 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.+....+..|......|..++..|..++...++...-+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666666665555544443
No 212
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=51.46 E-value=75 Score=23.90 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+..|+.++..++.--..+..++..+.-....+..++...+..++.|..|+...+.
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 3344555555555444455555555555555555555556666666665554443
No 213
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=51.23 E-value=42 Score=28.56 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=11.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013689 228 RMLSNRESARRSRRRKQAHLNELETQA 254 (438)
Q Consensus 228 R~lsNRESARRSR~RKq~~leeLE~qV 254 (438)
|+...-.+-|+.|.+=...+.+|..-|
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lv 53 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLI 53 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555455555555433
No 214
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=51.07 E-value=13 Score=32.47 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
++..+...|..|++.|+.+++.|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677777777777777665543
No 215
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=51.03 E-value=1.3e+02 Score=26.69 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 288 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq 288 (438)
+.-+..|...|..|..++.+-.+-...|..-....+++
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~ 115 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDV 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554444444443333333333
No 216
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.91 E-value=9.9 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~ 297 (438)
.|+-||..|.+++..|.+|+.
T Consensus 4 alefendaleqkiaalkqkia 24 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 217
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.72 E-value=24 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKYDES 278 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~~~L 278 (438)
..|+.||..|.+++..|.|+...|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 467888888888888777776654
No 218
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.69 E-value=66 Score=30.34 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.+..+..+-...++++..++++++.++..++.
T Consensus 115 ~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 115 DLDNAATEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444556666666666665544433
No 219
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.29 E-value=72 Score=23.37 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 289 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv 289 (438)
.++++++.++..++.+-..+..++..+.+.+..+..+=..|+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 220
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.15 E-value=56 Score=34.93 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=4.6
Q ss_pred cccccCCCc
Q 013689 212 TETIEGLDS 220 (438)
Q Consensus 212 ~~~~~~~d~ 220 (438)
|++++.|+.
T Consensus 49 CrLQglLdk 57 (562)
T 3ghg_A 49 CRMKGLIDE 57 (562)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhHHh
Confidence 445555553
No 221
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.89 E-value=98 Score=29.44 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
++...+..+..+..+=..+++++..++.+|..++....
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666666677777777777777765543
No 222
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.45 E-value=70 Score=33.48 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 279 AVN-NRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 279 ~~E-N~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..+ -+.|+.++.+|..++..+++.+..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 7788888888888888877766543
No 223
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.44 E-value=94 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 255 GQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 255 ~~Le~EN~~L~~el~~l~qk~ 275 (438)
..|+..|..|...+.++.++|
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 224
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.03 E-value=15 Score=27.33 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGL 268 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el 268 (438)
.|+++|+.++..|+.....|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999888887776654
No 225
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.01 E-value=48 Score=29.42 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
++..|...++....+...|..++..-..+...++.++..+..+++.|.+-|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555667777777777777777777777778888888888877665
No 226
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=47.95 E-value=92 Score=23.88 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.|..||..|+.-+++=+.-.+.+|.+|.++
T Consensus 21 eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 21 ELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333334444445443
No 227
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=47.80 E-value=55 Score=28.98 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRA-EHSSLLKGLTDVN 272 (438)
Q Consensus 247 leeLE~qV~~Le~-EN~~L~~el~~l~ 272 (438)
++.|+.++..|+. +...+.+++....
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar 37 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAA 37 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4556666666633 5555555555443
No 228
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=47.60 E-value=24 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|.......+.||-.|.+++..|...+
T Consensus 6 lekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34445577889999999998887543
No 229
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=47.52 E-value=26 Score=32.54 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
.+.+|..++.+|+.+|..|+.+.+...++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666665555544443
No 230
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.44 E-value=1.1e+02 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 259 AEHSSLLKGLTDVNQKYDES 278 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L 278 (438)
.|...+...+.+++.+|..-
T Consensus 21 ~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 21 VERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455433
No 231
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=47.27 E-value=52 Score=32.79 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
|+++|+.+++.|+.+...|..+++.-. ........=++|..++..+.+++..++...++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRP-ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 306 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444443332100 01112233345677777777777766654433
No 232
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.70 E-value=44 Score=33.28 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 013689 286 KADIETLR 293 (438)
Q Consensus 286 raqve~Lr 293 (438)
+.++.+|+
T Consensus 46 ~~~i~~l~ 53 (323)
T 1lwu_C 46 QQQLVDIR 53 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 233
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=46.69 E-value=18 Score=28.53 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 237 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 237 RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
|+.|.+=...+.+|..-|-.+...--.=..-|......+..|..++..|+.+++.|+++
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333335566777776665432111112223334445667778888888888887653
No 234
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.44 E-value=91 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.411 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 288 DIETLRAKVKMAEETVKR 305 (438)
Q Consensus 288 qve~Lrakl~maE~~v~R 305 (438)
++..|+..++.+.+...|
T Consensus 26 dV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 26 DANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 235
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=46.35 E-value=53 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLR 293 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lr 293 (438)
.++..|+.|.-.+++|+
T Consensus 60 ~le~~n~~l~~riqELE 76 (83)
T 4ath_A 60 KLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 45566666665555554
No 236
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.98 E-value=25 Score=28.17 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 262 SSLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
...-..+..+..++.+...+.+.|+.++..+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445555555555555666555554
No 237
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=45.84 E-value=1e+02 Score=28.79 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
++...|..++..|+.+...|..+++.+
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 238
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=45.23 E-value=79 Score=30.36 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 224 KRARRMLSNRESA-RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 224 KR~RR~lsNRESA-RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
|-.=.-|+|||.. +.+|.||+.-.++ +..|+.+. --..+|..|++++..++.+|-+..+++..+.+
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l~~~----I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKITDE----IAHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 3333568888876 5555555443333 33344321 12357788888888888998888888876543
No 239
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=45.18 E-value=1.5e+02 Score=25.53 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
..++.|..+|..|+.+...|..+-.. ....|......|.+++.+-+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQR---VVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666655443322 222333444444444444443
No 240
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=45.13 E-value=8.6 Score=36.65 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
+..|..+.+.|+.||..|+.++.. +..+..||.+||
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr 56 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESE----VADLKKENKDLK 56 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344555556666666666555442 224445555554
No 241
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.71 E-value=94 Score=32.88 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRIL---KADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-~~EN~~L---raqve~Lrakl~maE~~v~Rl 306 (438)
+.++..+-..++.||..++++.......|... ..-|..| ++++.+-.++|+.-++..+++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667777777777666666543 2223333 556666666666655544443
No 242
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=44.44 E-value=34 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
|..+..+|..+|..|..++..|+.-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44445566677777777777776543
No 243
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.30 E-value=1.4e+02 Score=25.53 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQK 274 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk 274 (438)
-+++|+.++...+.+...-+++|.+.++.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444443
No 244
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.23 E-value=82 Score=27.76 Aligned_cols=26 Identities=8% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRA-EHSSLLKGLTDVN 272 (438)
Q Consensus 247 leeLE~qV~~Le~-EN~~L~~el~~l~ 272 (438)
++.|+.++..|+. +...+...+....
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~ 37 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAR 37 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHH
Confidence 4556666666665 4555555555443
No 245
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=42.76 E-value=1.4 Score=37.69 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+...|..++..|.++...|..||..|+.++..|+.++..+..
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~ 100 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQN 100 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666667778888888887777766655543
No 246
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=42.68 E-value=49 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
.+++.+++.+...|+..|..|..++++|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35667778888888888888888888776543
No 247
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.61 E-value=99 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 013689 254 AGQLRAEHSSL 264 (438)
Q Consensus 254 V~~Le~EN~~L 264 (438)
+..|+..|-+|
T Consensus 12 iarlkkdnlql 22 (52)
T 3he5_B 12 IARLKKDNLQL 22 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhh
Confidence 33444444333
No 248
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=42.47 E-value=22 Score=28.42 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 013689 278 SAVNNRILKADIET 291 (438)
Q Consensus 278 L~~EN~~Lraqve~ 291 (438)
|..+|+.||.+|..
T Consensus 48 L~eq~~lLK~EIRR 61 (71)
T 3bbp_D 48 LMEQIKLLKSEIRR 61 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 249
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.02 E-value=99 Score=31.73 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+|..++..++........+=+.|+..+..++.+|..++..+..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444333344444555555556666665555555444
No 250
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.94 E-value=3e+02 Score=28.15 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
.+|+++-.+|+.+..+...|.+.+.+
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544443
No 251
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.84 E-value=76 Score=26.03 Aligned_cols=16 Identities=38% Similarity=0.304 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 283 RILKADIETLRAKVKM 298 (438)
Q Consensus 283 ~~Lraqve~Lrakl~m 298 (438)
+.-+.++..|..+++.
T Consensus 91 Rir~~q~~~L~~kf~e 106 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVE 106 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 252
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.59 E-value=26 Score=24.45 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 270 DVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 270 ~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
.|..+...|..+|..|..++..|+.-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455556677777777777777543
No 253
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.48 E-value=69 Score=23.89 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
+++..|..-|..|-+++.+|...+...|..+.|+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4445555556666666666666666666555554
No 254
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.41 E-value=53 Score=22.33 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 278 SAVNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 278 L~~EN~~Lraqve~Lrakl~maE~~v 303 (438)
|+.+-+.|.+-+++|+.++..+|++|
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666655
No 255
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.40 E-value=1.7e+02 Score=25.12 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHhccchhhh
Q 013689 303 VKRVTGLNPLLL 314 (438)
Q Consensus 303 v~Rl~~ln~~l~ 314 (438)
+.||.+-|..|.
T Consensus 93 L~rLQ~eNd~L~ 104 (112)
T 1x79_B 93 LVRLQKDNDSLQ 104 (112)
T ss_dssp ------------
T ss_pred HHHHHhhccchh
Confidence 356666666654
No 256
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.94 E-value=1.4e+02 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
++|..+|..|...-.++.-.|-+|.
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDLa 30 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDLA 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3444444444444444444444443
No 257
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.77 E-value=86 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
+++|+.+--....+..+|+.....+..||..|+..+..|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 5566666666666777777777777777777776666664
No 258
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.67 E-value=38 Score=34.59 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.+|..+++.|+.+...|..+.+.+ ..+.+.|+.++..++.+++..+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l-------~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYI-------KDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555444433 3344455555555655555443
No 259
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=40.58 E-value=94 Score=29.31 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 285 (438)
Q Consensus 254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L 285 (438)
+-+...||-.|..+...+++++.-...=-++|
T Consensus 124 Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rL 155 (214)
T 2cly_A 124 LFDVQRNNIAMALEVTYRERLHRVYREVKNRL 155 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777776666666655555545555
No 260
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.55 E-value=2e+02 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lra 294 (438)
++..+..|-..|++++...|.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666655543
No 261
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.35 E-value=1.4e+02 Score=28.09 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=4.9
Q ss_pred ccCCCchHHH
Q 013689 215 IEGLDSVDDK 224 (438)
Q Consensus 215 ~~~~d~~d~K 224 (438)
+-.+|..+.+
T Consensus 59 L~~ld~~~~~ 68 (341)
T 3fpp_A 59 LGVIDPEQAE 68 (341)
T ss_dssp EEEECCHHHH
T ss_pred EEEEChHHHH
Confidence 3445555543
No 262
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.96 E-value=68 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~ 272 (438)
|.+++..|+.|...|+-++..|.
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 263
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=39.89 E-value=1.1e+02 Score=29.29 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 259 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 259 ~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..-..++.++..+++++.....|+..+++++++-|+.+..+.+..++.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445556666666666777899999999999999999998888875
No 264
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.80 E-value=1.8e+02 Score=24.99 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 296 (438)
Q Consensus 253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl 296 (438)
+|..|+.+..-...-+..=+..-..+..+...|..+++.|..++
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 35555555555554444444444455566666666666666554
No 265
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.66 E-value=49 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 280 ~EN~~Lraqve~Lrakl~maE~~v 303 (438)
.+|....++|++|+++-..+++++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 266
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.57 E-value=0.58 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQ 244 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq 244 (438)
-.+.+||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 46778999999999999999984
No 267
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.38 E-value=71 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 279 AVNNRILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 279 ~~EN~~Lraqve~Lrakl~maE~~v~Rl 306 (438)
..||..|..+++.|...+..++.+.+.+
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 268
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.35 E-value=73 Score=29.03 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013689 283 RILKADIETLRAKVK 297 (438)
Q Consensus 283 ~~Lraqve~Lrakl~ 297 (438)
+.|-.++.+||.++.
T Consensus 116 ~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 116 NAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666665553
No 269
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=38.66 E-value=1.9e+02 Score=26.27 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 275 YDESAVNNRILKADIETLRAKVKMAEETVK 304 (438)
Q Consensus 275 ~~~L~~EN~~Lraqve~Lrakl~maE~~v~ 304 (438)
+..+..+=...+++++.++++|..++...+
T Consensus 100 ~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 100 YDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444455566666666666554443
No 270
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.65 E-value=35 Score=23.83 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lra 294 (438)
|..+...|..+|..|..++..|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445566666666666666643
No 271
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.59 E-value=1.9e+02 Score=30.89 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKG 267 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~e 267 (438)
++.|-..++.....|..+
T Consensus 517 ~~~~~~~~~e~~~ql~~k 534 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEK 534 (592)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344333444433
No 272
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.91 E-value=1.2e+02 Score=23.19 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013689 279 AVNNRILKADIETLRAKV 296 (438)
Q Consensus 279 ~~EN~~Lraqve~Lrakl 296 (438)
..|-..|+..+..|+.+|
T Consensus 55 k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 273
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=37.65 E-value=1.2e+02 Score=24.74 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 013689 222 DDKRARRMLS 231 (438)
Q Consensus 222 d~KR~RR~ls 231 (438)
+.|+.-|+++
T Consensus 19 eLkkevkKL~ 28 (81)
T 3csx_A 19 DLKKKVRKLN 28 (81)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 274
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.44 E-value=54 Score=26.39 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 268 LTDVNQKYDESAVNNRILKADIET 291 (438)
Q Consensus 268 l~~l~qk~~~L~~EN~~Lraqve~ 291 (438)
+..++..+..++.+=..+|++++.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445544443
No 275
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.95 E-value=1.2e+02 Score=23.06 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
|-++...|..||.-||.+++.-..+|..+|..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 34445566677777777777666666555533
No 276
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=36.78 E-value=1.6e+02 Score=23.49 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 254 AGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 254 V~~Le~EN~~L~~el~----~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
...|-.||..|+..+. .+.++|.+|..=-..=|.+-+=|..|.+.|.+.|.+|+
T Consensus 10 ~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~ 67 (70)
T 3brv_B 10 LQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLG 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666554443 34445555555444455666667788888888887765
No 277
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.77 E-value=44 Score=32.72 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~ 280 (438)
+.+++.|+.+|+.|.++++.|++....+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666666666666666666655444444
No 278
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=36.63 E-value=55 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve~Lra 294 (438)
+..+|..+|..|..++..|+.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 334455555555555555543
No 279
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=35.62 E-value=19 Score=31.82 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETLRAKVKM 298 (438)
Q Consensus 280 ~EN~~Lraqve~Lrakl~m 298 (438)
..|..|+-+++.|++.|+|
T Consensus 55 ~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665
No 280
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.59 E-value=36 Score=34.91 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 276 DESAVNNRILKADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 276 ~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l 309 (438)
..+..|+..|+.+...|+.+++...+.+++...+
T Consensus 42 ~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~ 75 (434)
T 4b4t_M 42 RIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQL 75 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3334444445555555555555555555555443
No 281
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.47 E-value=1.1e+02 Score=22.30 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 271 VNQKYDESAVNNRILKADIETLRAKVKMAEET 302 (438)
Q Consensus 271 l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~ 302 (438)
|-|++..+..|=..-++++..|+.|++.+|+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555556666666666666654
No 282
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.10 E-value=33 Score=26.96 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLK 266 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~ 266 (438)
.|+..|+.++..|+.++..|.+
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555544443
No 283
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=33.89 E-value=2.4e+02 Score=24.55 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 013689 274 KYDESAVNN 282 (438)
Q Consensus 274 k~~~L~~EN 282 (438)
+|..|..+=
T Consensus 72 eY~~L~KkY 80 (119)
T 2avr_X 72 QYQELASKY 80 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 284
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.72 E-value=33 Score=33.64 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
++...|..+|+.|++++++|++++..
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666554433
No 285
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=33.44 E-value=86 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 283 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~ 283 (438)
.+.+++..++..|+.|..-...+|.++.-.++....++.
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~ 54 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGEND 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 455667777777777777777777766665555544443
No 286
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=32.63 E-value=23 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L 264 (438)
..|+++||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888887766554
No 287
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.54 E-value=1.9e+02 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~ 272 (438)
+.|+.+++.|+.+-..|..++..+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 288
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=32.52 E-value=83 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L 264 (438)
.+.+|+.+|+.++..|..|
T Consensus 5 e~~~l~~qi~~~ekr~~RL 23 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRL 23 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 289
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.24 E-value=89 Score=28.95 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
+.++-|-.++..|+.+|..|.++++.|++..+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788777777777666665554443
No 290
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.95 E-value=2.5e+02 Score=24.25 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 013689 287 ADIETLRAKVKMAE 300 (438)
Q Consensus 287 aqve~Lrakl~maE 300 (438)
..+..|+.|+..++
T Consensus 69 ~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 69 GVAVSIQAKIDELK 82 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554444
No 291
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.92 E-value=58 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 279 AVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 279 ~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
..||..|..+++.++..+..++++.++
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444444444443333333
No 292
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.42 E-value=1.5e+02 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l 271 (438)
+.|+.++.....+...+.+.+...
T Consensus 13 ~~L~~el~~~~~~r~~~~~~i~~A 36 (156)
T 2f23_A 13 ERLMQQLERERERLQEATKILQEL 36 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333444444444433
No 293
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.34 E-value=4.4e+02 Score=27.12 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
..++..++..++.........-++|+..+...+.++..+++.|..+.
T Consensus 86 Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 86 SRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555544444444455556666666666666666666666554
No 294
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.19 E-value=1e+02 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~ 269 (438)
.|..+|..|+.||..|.+-++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777766655
No 295
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.89 E-value=39 Score=22.20 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013689 257 LRAEHSSLLKGLTD 270 (438)
Q Consensus 257 Le~EN~~L~~el~~ 270 (438)
|+..|..|++++..
T Consensus 5 lkqknarlkqeiaa 18 (28)
T 3ra3_B 5 LKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHH
Confidence 34444444444443
No 296
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=30.75 E-value=3.3e+02 Score=25.36 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcc
Q 013689 240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL--KADIETLRAKVKMAEETVKRVTGL 309 (438)
Q Consensus 240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L--raqve~Lrakl~maE~~v~Rl~~l 309 (438)
+.||.+-++-|..++..|+.|-..|..++..-...-.++.+--..+ -.+.+..+..+..++.+|.-+.++
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsL 85 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSL 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888888888888777777654333322222222222 233444444444444444444433
No 297
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.38 E-value=2.4e+02 Score=27.07 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQK-YDESAVNNRILKAD 288 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk-~~~L~~EN~~Lraq 288 (438)
+.+.+|+.+++.|+.+...+..++..+..+ ...|..-...|+.+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 270 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDE 270 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777766666655 33344433344333
No 298
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.00 E-value=2.5e+02 Score=23.59 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
+..+..|+.-+.--+.-...|.++-..|..-+..+..||..-...+.+|++++..+
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 299
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.91 E-value=2.2e+02 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~ 270 (438)
++|.+-..|+.....|..+++.
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 300
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.76 E-value=3.1e+02 Score=24.59 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhh
Q 013689 287 ADIETLRAKVKMAEETVKRVTGLNPLL 313 (438)
Q Consensus 287 aqve~Lrakl~maE~~v~Rl~~ln~~l 313 (438)
..+.+|.+-|+....+|..+++.--+|
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~L 124 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGIL 124 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence 346677788888889999988765544
No 301
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.60 E-value=72 Score=23.81 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
-..||.-|..|+..|..|.+.+..|...+..|+
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345777788888888888888776666555444
No 302
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.09 E-value=1.2e+02 Score=26.26 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
+|..+|..|..|+..|.+++..+++++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666665555555554433
No 303
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=28.85 E-value=2.7e+02 Score=23.68 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013689 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNP 311 (438)
Q Consensus 266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~ 311 (438)
.++...+++..+--.|=+.+.+++++|-.|..-.|..|.|+..+-.
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444445555555556666778888888888888888888876543
No 304
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.23 E-value=33 Score=36.36 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHh
Q 013689 221 VDDKRARRMLSN 232 (438)
Q Consensus 221 ~d~KR~RR~lsN 232 (438)
+++|-+|.+.++
T Consensus 310 ~e~~~~~~~e~~ 321 (575)
T 2i1j_A 310 REEKLAKQAQRE 321 (575)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 305
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.92 E-value=3.6e+02 Score=24.76 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=20.1
Q ss_pred cccccCCCchHHHHHHHHHHhHHHHH
Q 013689 212 TETIEGLDSVDDKRARRMLSNRESAR 237 (438)
Q Consensus 212 ~~~~~~~d~~d~KR~RR~lsNRESAR 237 (438)
++.+...+|.|.+..-|++++....-
T Consensus 39 ~eLirs~~PeDL~~AN~LiK~m~~~d 64 (186)
T 1oxz_A 39 ARLLKSSHPEDLRAANKLIKEMVQED 64 (186)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhhHHHHHHHHHHHhccc
Confidence 35667788999999999998877543
No 306
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.68 E-value=1.1e+02 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 242 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 271 (438)
Q Consensus 242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l 271 (438)
.|...+.+||..+..-..++..|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776666666666665543
No 307
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.62 E-value=3.6e+02 Score=24.71 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhh
Q 013689 112 DEYRAYLKTKLD 123 (438)
Q Consensus 112 ~~y~a~Lk~kL~ 123 (438)
.+|..|||.|-.
T Consensus 24 ~el~~f~keRa~ 35 (301)
T 2efk_A 24 DRYVKFVKERTE 35 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788876643
No 308
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.52 E-value=3e+02 Score=23.80 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
|.-|+|+..-+ .-+.--.+|++-..|+|.++++++.+...+.+++ +.+-..-+.+++.++.+|.|
T Consensus 40 ELeRLr~~~d~--~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~----------ese~~~kkK~le~~~~kV~m 104 (115)
T 3vem_A 40 ELEKLRRESEN--SKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV----------EAEHNTRTTKIEKDKNLVIM 104 (115)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 45566664322 1122223455555566666665555554444433 34555556777777777655
No 309
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.50 E-value=5.2e+02 Score=27.38 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
+.|..|..++.+|..+..+++.+++++..
T Consensus 31 ~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 31 AYEAAVAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 310
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.71 E-value=1.4e+02 Score=20.22 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
..|..+|+.|+..|-.-+++++.|+.++
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455666666666666666666555443
No 311
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=26.62 E-value=2.4e+02 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 282 NRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 282 N~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
.-.||.+.+-|..-..|.-+...||.
T Consensus 45 ey~iKkq~evl~Et~~mipd~~~Rl~ 70 (106)
T 1qsd_A 45 PYDLKKQEEVLDDTKRLLPTLYEKIR 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566666666655566555555553
No 312
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.57 E-value=2.9e+02 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
|++|+.++...+.+...-+++|.+..+.|
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666655555555555555554443
No 313
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=26.43 E-value=2.9e+02 Score=23.30 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 238 RSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 238 RSR~RKq~~leeLE~-------qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
.-|..|+.+|.+--. -..+|+....+|..+|..|...--.|+..-..-.-+|.+|+.+|.
T Consensus 21 ~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 21 TARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp HHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 334456666665110 123455566666666665555444444444444556666665543
No 314
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.43 E-value=2.5e+02 Score=22.47 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 300 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE 300 (438)
.||..++..-+.|...|..-+..++.++..-..=|+.|..+...++.....++
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56777777777777777777777777777767777777777766665555444
No 315
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.14 E-value=4.4e+02 Score=27.51 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKV 296 (438)
Q Consensus 284 ~Lraqve~Lrakl 296 (438)
.|+.+|..|..++
T Consensus 179 ~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 179 SLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 316
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.07 E-value=2.7e+02 Score=22.76 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 301 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~ 301 (438)
+.+.+|.-+|..|+.|-.+...+|. .-..|=..|+.+++.=.+.++.+.+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLK-------sTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLK-------ATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555555554444444443 3334444555555554444444443
No 317
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.97 E-value=2.9e+02 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVN 272 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~ 272 (438)
..+.+...+..+|++|.
T Consensus 44 ~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 318
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.88 E-value=1.5e+02 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQK--------YDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 260 EN~~L~~el~~l~qk--------~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+...+..++++|... ......+-..+..++..|+++++..+..+++
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555432 2222233444455555555555555544433
No 319
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.71 E-value=1.3e+02 Score=22.29 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 268 (438)
Q Consensus 234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el 268 (438)
|-|-||=.|-++.+++||.++..-+.++..+..++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555444444444444333
No 320
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.62 E-value=2.8e+02 Score=22.77 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=6.5
Q ss_pred HHHhHHHHHHHH
Q 013689 229 MLSNRESARRSR 240 (438)
Q Consensus 229 ~lsNRESARRSR 240 (438)
-..-||+|+--+
T Consensus 21 aFgKrEaA~Ee~ 32 (84)
T 1gmj_A 21 AFGKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred CcccHHHHhHHH
Confidence 344466666554
No 321
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.48 E-value=3.7e+02 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKVKMAEETV 303 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v 303 (438)
.|+.=-..|..|-.|.+..+
T Consensus 99 KLrELEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLT 118 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHH
Confidence 34433334444444444433
No 322
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=25.03 E-value=4.1e+02 Score=24.46 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ 308 (438)
|..|..++...+.=..-|..+-..|..++..+..++..++.++.+.-......-.++.-..|
T Consensus 19 L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g 80 (217)
T 3aon_A 19 LTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVE 80 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445555555556666777777777788888888888888876655554444444334
No 323
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.85 E-value=2.8e+02 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 246 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 275 (438)
Q Consensus 246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~ 275 (438)
.|++|+.++...+.+...-+++|.+..+.|
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666655555555555555554443
No 324
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.83 E-value=3.2e+02 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 267 GLTDVNQKYDESAVNNRILKADIETLRAKVK 297 (438)
Q Consensus 267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ 297 (438)
++..+..+..+|...|--|.-++..|...++
T Consensus 77 EMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 77 EMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444555666777777777666654443
No 325
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.76 E-value=5.2e+02 Score=25.59 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 236 ARRSRRRKQAHLNELETQAGQ 256 (438)
Q Consensus 236 ARRSR~RKq~~leeLE~qV~~ 256 (438)
+++.=..|++.++.|+..+..
T Consensus 321 ~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 321 ATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555443
No 326
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.61 E-value=1.1e+02 Score=21.24 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 273 QKYDESAVNNRILKADIETLRA 294 (438)
Q Consensus 273 qk~~~L~~EN~~Lraqve~Lra 294 (438)
.+..+|..+|..|..++..|+.
T Consensus 8 dKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455555555555555543
No 327
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=24.16 E-value=3e+02 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 286 KADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 286 raqve~Lrakl~maE~~v~Rl 306 (438)
++++..|..++.+.-+.-.|+
T Consensus 68 raDL~~l~r~~av~g~E~RRI 88 (90)
T 4b6x_A 68 RADLADLQRRFAVLRNEDRRI 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhc
Confidence 566667777776655544444
No 328
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.89 E-value=4.1e+02 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v~R 305 (438)
..+.++...++++..++..++.
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~ 123 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVET 123 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666665555444
No 329
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.82 E-value=1.8e+02 Score=24.31 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 277 ESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 277 ~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
.|...-..|..+++.|...|......++.
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666666666666665555
No 330
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=23.62 E-value=33 Score=28.92 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAV 280 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le---~EN~~L~~el~~l~qk~~~L~~ 280 (438)
|+..+++|..++.+++ ..+..|..++......|..-..
T Consensus 36 KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERa 76 (96)
T 3fx0_A 36 KQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQ 76 (96)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555 3333444444444444444333
No 331
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=23.46 E-value=2.5e+02 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 284 ~Lraqve~Lrakl~maE~~v~Rl 306 (438)
.||.+.+-|..-..|.-+...||
T Consensus 49 ~iKkq~evl~Et~~mipd~~~Rl 71 (108)
T 1h7c_A 49 DIKKQAEILQESRMMIPDCQRRL 71 (108)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444444444444444444443
No 332
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=23.12 E-value=17 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILK----ADIETLRAKVKMAEETVKRV 306 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr----aqve~Lrakl~maE~~v~Rl 306 (438)
.+..|.-.|.++++.|.-++..+..||..|| .+-.-|..||.-....++|+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l 94 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDL 94 (95)
T ss_dssp -------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677777777777777777777775 33344555555555555443
No 333
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.12 E-value=2.4e+02 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
.|......+......++.+-..|..++..|
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l 82 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVL 82 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 334
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=23.03 E-value=1.9e+02 Score=19.92 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 263 SLLKGLTDVNQKYDESAVNNRILKADIETL 292 (438)
Q Consensus 263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~L 292 (438)
.|++++..+.+++.-|.-.-..|+..+..|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555444
No 335
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.92 E-value=2.8e+02 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 264 LLKGLTDVNQKYDESAVNNRILKADIETLR 293 (438)
Q Consensus 264 L~~el~~l~qk~~~L~~EN~~Lraqve~Lr 293 (438)
|..++..+......+..+-..|+.++.+|+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 336
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.89 E-value=3e+02 Score=23.95 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013689 287 ADIETLRAK 295 (438)
Q Consensus 287 aqve~Lrak 295 (438)
.+...|..+
T Consensus 84 ~~~~~L~~~ 92 (196)
T 1fio_A 84 AQAENSRQR 92 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 337
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=22.84 E-value=4.1e+02 Score=23.71 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTD 270 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~ 270 (438)
+-+.+|+.++.++..|.+.|..+...
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr 54 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQT 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 338
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=22.61 E-value=65 Score=34.14 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264 (438)
Q Consensus 231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L 264 (438)
+.|..++|-|+|++.-|+..++.+..+..++-.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (573)
T 3ppm_A 30 KARGAATRARQKQRASLETMDKAVQRFRLQNPDL 63 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3445566777778888999999999888875443
No 339
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=22.59 E-value=2.9e+02 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689 278 SAVNNRILKADIETLRAKVKMAEETVKRVTGLN 310 (438)
Q Consensus 278 L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln 310 (438)
+..+=+.+...++++..+++..|..|.|+..|-
T Consensus 228 V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (268)
T 2yo3_A 228 VENKMKQIEDKIEEILSKIYHIENEIARIKKLI 260 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444455555555555556655443
No 340
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.53 E-value=3.5e+02 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=19.2
Q ss_pred ccccCCCchHHHHHHHHHHhHHHH
Q 013689 213 ETIEGLDSVDDKRARRMLSNRESA 236 (438)
Q Consensus 213 ~~~~~~d~~d~KR~RR~lsNRESA 236 (438)
+.+...+|.|.+..-|++++...-
T Consensus 24 ~Lirs~~PeDL~~AN~LiK~m~~~ 47 (158)
T 1naf_A 24 RLLKSSHPEDLRAANKLIKEMVQE 47 (158)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCChhhHHHHHHHHHHHhcc
Confidence 456778899999999999987753
No 341
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.23 E-value=2.8e+02 Score=23.08 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 289 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv 289 (438)
++.|.++..--.|-..++..+- .|+...+.+|+..
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvy-------eLE~~h~kmKq~Y 73 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVY-------ERELTHRKMKDAY 73 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4666665554444444444444 4444444454433
No 342
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=22.19 E-value=1.6e+02 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 (438)
Q Consensus 245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~ 277 (438)
+.+.+|...|..|+.|..-...+|.++.--++.
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~ 40 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQE 40 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888877777766644443
No 343
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=22.11 E-value=4.5e+02 Score=23.94 Aligned_cols=12 Identities=17% Similarity=0.639 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhh
Q 013689 112 DEYRAYLKTKLD 123 (438)
Q Consensus 112 ~~y~a~Lk~kL~ 123 (438)
.+|..|||.|-.
T Consensus 31 ~el~~f~~eRa~ 42 (305)
T 2efl_A 31 EKYIKFVKERTE 42 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777776643
No 344
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.11 E-value=1.5e+02 Score=19.88 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013689 249 ELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 249 eLE~qV~~Le~EN~~L~~el~ 269 (438)
.||.+...|+...+.|.++++
T Consensus 5 alekkcaalesklqalekkle 25 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 345
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.09 E-value=46 Score=28.66 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013689 274 KYDESAVNNRILKADIE 290 (438)
Q Consensus 274 k~~~L~~EN~~Lraqve 290 (438)
++..|..||+.||.++.
T Consensus 16 eL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 16 EVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344455555554443
No 346
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.03 E-value=1.8e+02 Score=25.04 Aligned_cols=7 Identities=14% Similarity=-0.254 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 013689 222 DDKRARR 228 (438)
Q Consensus 222 d~KR~RR 228 (438)
+..+.+.
T Consensus 59 dl~~l~~ 65 (148)
T 3gpv_A 59 ALKYLEM 65 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 347
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.02 E-value=7.4e+02 Score=26.41 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.+++..+..++.-|+.++...+.+..+...+++....+..|-.-|+.++..+++|+..
T Consensus 359 ddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE 416 (602)
T 1cii_A 359 LDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAE 416 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3445555555555666665555666666666666666666666666666666666443
No 348
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.97 E-value=5.2e+02 Score=24.64 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 307 (438)
Q Consensus 269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~ 307 (438)
..+.-++...+.+=..|+.++..|..+|.-.|..+.-|.
T Consensus 108 a~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 108 TALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 334444445555556677888888888877777666654
No 349
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.78 E-value=1.4e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRA 259 (438)
Q Consensus 227 RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~ 259 (438)
+++..-|.-.+.+-++|++||.||..|...|+.
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 350
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=21.59 E-value=2.8e+02 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCCCC
Q 013689 285 LKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLV 327 (438)
Q Consensus 285 Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~~p~~ 327 (438)
|+.++.+|..++..+++.+. .+|..+.+++.-+.|.+
T Consensus 110 ~~~~i~~~e~~~~~~~~~~~------~~l~~iPN~~~~~vP~g 146 (522)
T 3vbb_A 110 IDEAILKCDAERIKLEAERF------ENLREIGNLLHPSVPIS 146 (522)
T ss_dssp HHHSCCCCHHHHHHHHHHHH------HHGGGSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHhCCCCCCCCCCCC
Confidence 45555666666666555443 33444444444455554
No 351
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.59 E-value=3.7e+02 Score=22.70 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 298 (438)
Q Consensus 256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m 298 (438)
.|+....+|..+|..|...--.|+..-..-.-+|.+|+.+|..
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555555555555544444444444444556666555544
No 352
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.57 E-value=6.8e+02 Score=27.06 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 243 KQAHLNELETQAGQLRAEHS---------------SLLKGLTDVNQKYDESAVNNRILK 286 (438)
Q Consensus 243 Kq~~leeLE~qV~~Le~EN~---------------~L~~el~~l~qk~~~L~~EN~~Lr 286 (438)
+-..+++|+.++.+|+.|.. .|..++..+++++..+...+..-+
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERER 457 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777766665543 344555555555555544444333
No 353
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.29 E-value=1.9e+02 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 013689 280 VNNRILKADIETLRAK 295 (438)
Q Consensus 280 ~EN~~Lraqve~Lrak 295 (438)
.|-..|...+..|..|
T Consensus 27 selqalekklaalksk 42 (48)
T 1g6u_A 27 SELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 354
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.16 E-value=1.9e+02 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 295 (438)
Q Consensus 261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak 295 (438)
+..|.+++...+++...|..+...|+..++.|...
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 355
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.86 E-value=99 Score=31.52 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013689 286 KADIETLRAKVKMAEETVKRVTG 308 (438)
Q Consensus 286 raqve~Lrakl~maE~~v~Rl~~ 308 (438)
.++...|..++...++.++++..
T Consensus 45 ~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 45 EAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333444444444445555543
No 356
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.83 E-value=3.2e+02 Score=21.66 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 251 ETQAGQLRAEHSSLLKGLTDVNQKYD 276 (438)
Q Consensus 251 E~qV~~Le~EN~~L~~el~~l~qk~~ 276 (438)
..++..|+.+...|..++..+..++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555443
No 357
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.79 E-value=1.8e+02 Score=21.09 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279 (438)
Q Consensus 248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~ 279 (438)
++|-+++...-.|...-.+++..++.+..+|+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665554
No 358
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.53 E-value=4.5e+02 Score=25.12 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 235 SARRSRRRKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 299 (438)
Q Consensus 235 SARRSR~RKq~~leeLE~qV~~Le~EN-~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma 299 (438)
.|.-.|.|=..++++|..++.-.-.+- ..|...++.+.. .+..-+..|+.+++++|+++.-.
T Consensus 166 ~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~ 228 (273)
T 3s84_A 166 NAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPY 228 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhh
Confidence 455555555566666666655432221 112222233333 33344577888888888887653
No 359
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.51 E-value=3.4e+02 Score=26.20 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 218 LDSVDDKRARRMLSNRESARRSRR-RKQAHLNELETQAGQLRAEHSSLLKGLT 269 (438)
Q Consensus 218 ~d~~d~KR~RR~lsNRESARRSR~-RKq~~leeLE~qV~~Le~EN~~L~~el~ 269 (438)
--....|+++.-+-++.-----|+ ==...+.++..+++.|..-...+..+|.
T Consensus 149 YSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA 201 (242)
T 3uux_B 149 YSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIA 201 (242)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777754443222111111 1123344444444444444444444444
No 360
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.46 E-value=3.4e+02 Score=21.81 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRA-------------------EHSSLLKGLTDVNQKYDESAVNNR 283 (438)
Q Consensus 223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~-------------------EN~~L~~el~~l~qk~~~L~~EN~ 283 (438)
.++...+.......+.-+..-...+..|+..+..|.. .......++..+..++..+..+-.
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 013689 284 ILKADIETLRAKVK 297 (438)
Q Consensus 284 ~Lraqve~Lrakl~ 297 (438)
.|+.++..|+.++.
T Consensus 89 ~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 89 ELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 361
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.08 E-value=1.4e+02 Score=25.16 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 013689 281 NNRILKADIETL 292 (438)
Q Consensus 281 EN~~Lraqve~L 292 (438)
++..|+.++..|
T Consensus 97 ~~~~L~~~i~~L 108 (117)
T 3kin_B 97 KNKALKSVIQHL 108 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 362
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.07 E-value=3.1e+02 Score=25.75 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689 260 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 305 (438)
Q Consensus 260 EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R 305 (438)
+...|..++..+..++..+...-.+|+|+.+.+|++...-.+.+..
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~ 105 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.03 E-value=1.2e+02 Score=26.16 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 013689 250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAK 295 (438)
Q Consensus 250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~-EN~~Lraqve~Lrak 295 (438)
|-.+...|+.+.+.|..+|..|++...-... +-..|..=|..-|.-
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~a 51 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNA 51 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445556666666667777666664433322 222344444444433
Done!