BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013690
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 104 bits (259), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 13/131 (9%)
Query: 265 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERT 324
++ V F+ +DE +LDA+C+ +KP + + +++V EGDP+ EMLFI++G++ T+
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 325 NGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEA 384
+G N S L +GDF G+EL+ W L +S SN+P STR+V+AL VEA
Sbjct: 68 SGFYNRSL-------------LKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEA 114
Query: 385 FGLMAHDLKHV 395
F L+A +LK V
Sbjct: 115 FALIADELKFV 125
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 204 RMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLD 263
R +++ + + + +L +++ Q++ + W + IDV L P ELR +I L +
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76
Query: 264 LLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWI 317
LL+ + F++ L +L +K +F ++ +GD + + F+ G M +
Sbjct: 77 LLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEV 129
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 256 IKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 315
IK ++ LK+V F++L EE+L L D ++ Y +I+ +G +G
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQG---------ARGDT 200
Query: 316 WIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRS 375
+ SK + N + S + D F+ L GD++GE ++L + T +
Sbjct: 201 FFIISKGKVNVTREDSPNED-PVFLR---TLGKGDWFGE---------KALQGEDVRTAN 247
Query: 376 VQALKNVEAFGLMAHDLKHVF 396
V A + V + KH+
Sbjct: 248 VIAAEAVTCLVIDRDSFKHLI 268
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 240 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 298
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 19 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 73
Query: 299 LEGDPIYEMLFIVQGKMWIY 318
+GD I +G IY
Sbjct: 74 DQGDDGDNFYVIDRGTFDIY 93
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 240 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 298
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 126 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 180
Query: 299 LEGDPIYEMLFIVQGKMWIY 318
+GD I +G IY
Sbjct: 181 DQGDDGDNFYVIDRGTFDIY 200
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 240 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 298
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 126 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 180
Query: 299 LEGDPIYEMLFIVQGKMWIY 318
+GD I +G IY
Sbjct: 181 DQGDDGDNFYVIDRGTFDIY 200
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 240 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 298
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 25 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 79
Query: 299 LEGDPIYEMLFIVQGKMWIY 318
+GD I +G IY
Sbjct: 80 DQGDDGDNFYVIDRGTFDIY 99
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 240 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 298
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 15 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 69
Query: 299 LEGDPIYEMLFIVQGKMWIY 318
+GD I +G IY
Sbjct: 70 DQGDDGDNFYVIDRGTFDIY 89
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 290 FYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF-----ISRKD 344
F +KHTH EGDP+ ++FI + + KER S+ S D+ + I++K
Sbjct: 61 FLYKHTH---EGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKI 117
Query: 345 HLADGDFWGEELVAWVLRD 363
+ D G EL A L D
Sbjct: 118 EIGD----GAELTAEFLDD 132
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 257 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMW 316
KR++ + L V ++LD+ + D ++P + IV++G+P E I++G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 317 IYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354
+ + +N +F+ L D++GE
Sbjct: 209 VLQRRS------------ENEEFVE-VGRLGPSDYFGE 233
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 257 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMW 316
KR++ + L V ++LD+ + D ++P + IV++G+P E I++G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 317 IYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354
+ + +N +F+ L D++GE
Sbjct: 211 VLQRRS------------ENEEFVE-VGRLGPSDYFGE 235
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 257 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMW 316
KR++ + L V ++LD+ + D ++P + IV++G+P E I++G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 317 IYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354
+ + +N +F+ L D++GE
Sbjct: 207 VLQRRS------------ENEEFVE-VGRLGPSDYFGE 231
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 375 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 426
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 335 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 394
Query: 427 RY 428
+
Sbjct: 395 TF 396
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 375 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 426
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 336 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 395
Query: 427 RY 428
+
Sbjct: 396 TF 397
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 375 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 426
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 293 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 352
Query: 427 RY 428
+
Sbjct: 353 TF 354
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 176 GLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWR- 234
G + M FL G++ + KA KE ++ + + PI+ L + +++ Y RY+ R
Sbjct: 196 GHMFMYFLRGSLP-WQGLKADTLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRL 254
Query: 235 ----KPD 237
KPD
Sbjct: 255 DFFEKPD 261
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 232 IWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAF 290
I RK DTI + +S ++ +R +K ++ ++ K+F+ +DE V A V P
Sbjct: 257 ILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGI 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,380,093
Number of Sequences: 62578
Number of extensions: 491997
Number of successful extensions: 1298
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 26
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)