Query 013690
Match_columns 438
No_of_seqs 338 out of 2503
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.8E-72 6.1E-77 583.3 32.4 368 9-434 193-573 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 1.4E-53 3E-58 413.9 29.0 320 21-402 101-427 (536)
3 PLN03192 Voltage-dependent pot 100.0 1.3E-52 2.9E-57 459.6 35.0 294 38-402 196-490 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 5.3E-45 1.2E-49 357.8 17.4 315 32-398 342-657 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 7.6E-44 1.6E-48 350.6 20.4 286 42-405 361-648 (815)
6 PRK09392 ftrB transcriptional 99.5 7.7E-13 1.7E-17 124.6 13.7 120 262-405 6-126 (236)
7 cd00038 CAP_ED effector domain 99.4 1.6E-12 3.6E-17 106.5 12.9 112 270-404 1-113 (115)
8 PRK11753 DNA-binding transcrip 99.4 4.7E-12 1E-16 116.9 13.7 111 272-404 6-117 (211)
9 PF00027 cNMP_binding: Cyclic 99.4 5.2E-12 1.1E-16 99.8 10.4 88 288-398 1-88 (91)
10 smart00100 cNMP Cyclic nucleot 99.3 2E-11 4.3E-16 100.6 13.2 108 270-398 1-108 (120)
11 KOG0614 cGMP-dependent protein 99.3 6.5E-12 1.4E-16 124.5 8.5 122 259-402 268-391 (732)
12 PRK10402 DNA-binding transcrip 99.3 1.6E-11 3.4E-16 115.0 10.6 102 280-404 25-127 (226)
13 COG0664 Crp cAMP-binding prote 99.3 4.8E-11 1E-15 109.6 13.6 118 266-406 3-121 (214)
14 PF07885 Ion_trans_2: Ion chan 99.3 2.5E-11 5.5E-16 94.1 9.8 55 138-192 24-78 (79)
15 PRK11161 fumarate/nitrate redu 99.3 3.9E-11 8.5E-16 112.8 13.0 116 265-404 15-132 (235)
16 KOG1113 cAMP-dependent protein 99.3 7.4E-12 1.6E-16 119.0 7.8 109 262-398 121-229 (368)
17 KOG0614 cGMP-dependent protein 99.3 8.5E-12 1.8E-16 123.7 8.2 116 255-398 146-261 (732)
18 COG2905 Predicted signal-trans 99.2 8.7E-11 1.9E-15 118.1 11.6 133 262-421 6-140 (610)
19 PLN02868 acyl-CoA thioesterase 99.2 1.8E-10 3.9E-15 117.4 13.8 111 262-398 7-117 (413)
20 PRK09391 fixK transcriptional 99.1 1.1E-09 2.4E-14 102.8 11.1 99 281-405 33-132 (230)
21 TIGR03697 NtcA_cyano global ni 99.1 1.1E-09 2.4E-14 99.6 10.6 92 294-406 1-93 (193)
22 KOG1113 cAMP-dependent protein 99.0 5.3E-10 1.1E-14 106.6 8.4 123 257-406 234-358 (368)
23 KOG3713 Voltage-gated K+ chann 99.0 1.6E-09 3.4E-14 107.9 8.4 60 141-200 380-439 (477)
24 PRK13918 CRP/FNR family transc 99.0 5.2E-09 1.1E-13 95.9 11.4 84 285-392 5-90 (202)
25 KOG1545 Voltage-gated shaker-l 98.6 1.1E-08 2.5E-13 97.3 0.0 46 142-187 397-442 (507)
26 PF00520 Ion_trans: Ion transp 98.5 1.2E-06 2.5E-11 79.2 10.7 55 133-187 140-200 (200)
27 PRK10537 voltage-gated potassi 98.5 3.2E-06 7E-11 85.1 14.5 54 138-191 168-221 (393)
28 KOG1419 Voltage-gated K+ chann 98.4 2.8E-06 6.1E-11 85.5 11.5 91 133-230 264-354 (654)
29 KOG1420 Ca2+-activated K+ chan 98.2 1.2E-06 2.7E-11 88.1 3.5 135 136-280 286-427 (1103)
30 PF01007 IRK: Inward rectifier 97.9 6.6E-05 1.4E-09 73.9 10.9 60 137-196 83-144 (336)
31 KOG4390 Voltage-gated A-type K 97.9 2.5E-06 5.4E-11 82.3 0.1 53 141-193 359-415 (632)
32 KOG3684 Ca2+-activated K+ chan 97.9 0.0003 6.4E-09 69.9 14.4 91 135-233 284-374 (489)
33 KOG1418 Tandem pore domain K+ 97.8 2.2E-05 4.7E-10 80.0 5.3 57 138-194 115-171 (433)
34 KOG2968 Predicted esterase of 97.6 5.3E-05 1.2E-09 80.4 4.6 102 278-402 500-602 (1158)
35 PRK11832 putative DNA-binding 97.3 0.0082 1.8E-07 54.7 13.6 94 278-398 14-108 (207)
36 KOG2968 Predicted esterase of 97.2 0.0025 5.5E-08 68.1 11.0 101 281-398 110-211 (1158)
37 KOG4404 Tandem pore domain K+ 97.0 0.00017 3.7E-09 68.6 -0.3 55 138-192 80-134 (350)
38 KOG4404 Tandem pore domain K+ 96.9 0.00094 2E-08 63.7 3.8 60 138-197 186-253 (350)
39 PF04831 Popeye: Popeye protei 96.7 0.034 7.3E-07 47.7 11.6 110 274-406 15-127 (153)
40 KOG3542 cAMP-regulated guanine 96.3 0.012 2.7E-07 61.0 7.5 111 261-398 279-390 (1283)
41 KOG1418 Tandem pore domain K+ 95.9 0.0023 4.9E-08 65.1 0.3 47 138-184 242-296 (433)
42 KOG3827 Inward rectifier K+ ch 95.8 0.036 7.7E-07 54.4 8.0 57 138-194 112-170 (400)
43 KOG3542 cAMP-regulated guanine 94.4 0.057 1.2E-06 56.3 4.9 90 263-388 37-126 (1283)
44 COG4709 Predicted membrane pro 91.1 1.2 2.6E-05 39.6 7.9 77 202-280 4-84 (195)
45 KOG3193 K+ channel subunit [In 88.1 0.12 2.6E-06 52.7 -0.6 37 140-176 219-255 (1087)
46 PF08006 DUF1700: Protein of u 84.9 5 0.00011 35.9 8.2 58 202-261 4-65 (181)
47 PLN03223 Polycystin cation cha 84.1 30 0.00066 40.1 15.0 28 167-194 1398-1425(1634)
48 PF00612 IQ: IQ calmodulin-bin 81.5 2.4 5.2E-05 23.5 2.9 18 415-433 2-19 (21)
49 KOG3676 Ca2+-permeable cation 78.1 61 0.0013 35.5 14.3 73 151-224 601-680 (782)
50 PF07883 Cupin_2: Cupin domain 76.0 4.9 0.00011 29.3 4.2 31 289-319 3-34 (71)
51 PF14377 DUF4414: Domain of un 70.1 9.4 0.0002 31.1 4.8 44 216-259 52-105 (108)
52 PF00060 Lig_chan: Ligand-gate 64.5 9.7 0.00021 32.2 4.1 59 134-193 40-98 (148)
53 PF05899 Cupin_3: Protein of u 60.8 14 0.00031 27.7 3.9 30 305-353 26-55 (74)
54 PRK13290 ectC L-ectoine syntha 59.8 46 0.00099 27.9 7.2 50 286-354 37-87 (125)
55 PF07697 7TMR-HDED: 7TM-HD ext 58.1 47 0.001 30.2 7.8 59 246-305 146-207 (222)
56 COG0662 {ManC} Mannose-6-phosp 55.8 26 0.00057 29.2 5.2 36 284-319 36-72 (127)
57 TIGR03037 anthran_nbaC 3-hydro 54.3 37 0.0008 29.7 5.8 61 304-394 48-108 (159)
58 smart00015 IQ Short calmodulin 53.7 18 0.00039 21.0 2.7 20 414-434 3-22 (26)
59 TIGR00769 AAA ADP/ATP carrier 53.2 2.4E+02 0.0051 29.5 12.6 50 134-190 139-191 (472)
60 PF10011 DUF2254: Predicted me 52.4 52 0.0011 33.1 7.5 136 136-298 98-236 (371)
61 smart00835 Cupin_1 Cupin. This 50.5 39 0.00084 28.8 5.5 56 285-354 31-87 (146)
62 KOG0162 Myosin class I heavy c 48.1 27 0.00059 37.7 4.7 20 410-431 693-712 (1106)
63 PF14377 DUF4414: Domain of un 47.8 51 0.0011 26.8 5.4 48 216-263 8-68 (108)
64 PF13314 DUF4083: Domain of un 47.2 1E+02 0.0022 22.0 6.5 14 200-213 43-56 (58)
65 COG1917 Uncharacterized conser 45.1 51 0.0011 27.4 5.3 50 286-355 45-95 (131)
66 COG3718 IolB Uncharacterized e 40.8 71 0.0015 29.7 5.7 33 287-319 32-64 (270)
67 KOG0498 K+-channel ERG and rel 40.6 1.7E+02 0.0037 32.3 9.4 43 246-288 371-418 (727)
68 PF07077 DUF1345: Protein of u 40.2 81 0.0017 28.3 6.0 52 134-185 128-179 (180)
69 PRK13264 3-hydroxyanthranilate 39.9 46 0.00099 29.7 4.2 63 302-394 52-114 (177)
70 COG5559 Uncharacterized conser 39.5 31 0.00068 24.6 2.5 19 242-260 5-23 (65)
71 PF02037 SAP: SAP domain; Int 38.9 38 0.00082 21.4 2.7 26 204-229 5-35 (35)
72 PF14841 FliG_M: FliG middle d 36.8 47 0.001 25.2 3.4 40 242-289 30-69 (79)
73 PF08763 Ca_chan_IQ: Voltage g 35.9 50 0.0011 21.0 2.7 20 413-433 8-27 (35)
74 PF15157 IQ-like: IQ-like 34.9 28 0.00061 26.9 1.8 12 418-429 51-62 (97)
75 cd07313 terB_like_2 tellurium 33.9 2.2E+02 0.0048 22.3 7.2 60 203-262 19-81 (104)
76 PHA03029 hypothetical protein; 33.1 1.4E+02 0.003 22.4 5.1 39 162-200 2-40 (92)
77 KOG3609 Receptor-activated Ca2 33.1 4.4E+02 0.0095 29.4 11.0 21 138-158 553-573 (822)
78 PRK06771 hypothetical protein; 31.9 2E+02 0.0043 22.7 6.1 41 177-217 11-51 (93)
79 PHA01757 hypothetical protein 31.8 2.2E+02 0.0047 21.7 6.0 47 162-209 4-50 (98)
80 PF01484 Col_cuticle_N: Nemato 29.3 1.8E+02 0.004 19.6 5.3 40 168-207 9-48 (53)
81 PRK11171 hypothetical protein; 28.5 1.3E+02 0.0029 28.6 5.8 49 285-353 185-234 (266)
82 PRK04190 glucose-6-phosphate i 27.5 2.3E+02 0.0049 25.7 6.8 53 286-353 70-131 (191)
83 TIGR00933 2a38 potassium uptak 26.7 88 0.0019 31.6 4.5 86 137-229 230-328 (390)
84 COG3837 Uncharacterized conser 26.2 97 0.0021 27.0 3.8 47 289-355 47-95 (161)
85 PF11699 CENP-C_C: Mif2/CENP-C 25.9 1E+02 0.0022 23.9 3.7 14 306-319 35-48 (85)
86 KOG1077 Vesicle coat complex A 25.7 2.4E+02 0.0052 30.9 7.3 101 179-283 499-615 (938)
87 PHA02909 hypothetical protein; 24.4 1.8E+02 0.0038 20.5 4.2 21 46-66 40-60 (72)
88 TIGR03404 bicupin_oxalic bicup 24.0 1.6E+02 0.0035 29.5 5.7 54 285-353 246-300 (367)
89 PF12973 Cupin_7: ChrR Cupin-l 23.4 2.2E+02 0.0049 21.8 5.3 63 286-386 26-88 (91)
90 COG4325 Predicted membrane pro 23.0 3.6E+02 0.0078 27.3 7.5 61 132-194 126-191 (464)
91 TIGR03404 bicupin_oxalic bicup 22.9 1.7E+02 0.0036 29.5 5.5 53 286-353 69-121 (367)
92 PF13623 SurA_N_2: SurA N-term 22.5 1.6E+02 0.0034 25.3 4.6 44 170-213 10-66 (145)
93 PRK11171 hypothetical protein; 22.0 1.7E+02 0.0036 27.9 5.1 33 287-319 64-98 (266)
94 PF08566 Pam17: Mitochondrial 21.8 3.7E+02 0.008 23.9 6.7 57 163-219 73-132 (173)
95 COG3450 Predicted enzyme of th 21.7 2.3E+02 0.005 23.4 5.1 41 292-353 53-93 (116)
96 PF11151 DUF2929: Protein of u 21.1 32 0.0007 24.5 0.0 18 138-155 2-19 (57)
97 KOG2302 T-type voltage-gated C 21.0 1.3E+03 0.029 26.7 14.0 31 162-192 1358-1389(1956)
98 PF10047 DUF2281: Protein of u 20.4 92 0.002 22.8 2.3 22 215-236 10-31 (66)
99 KOG4783 Uncharacterized conser 20.3 3.6E+02 0.0078 21.4 5.6 64 5-69 24-91 (102)
100 PF03268 DUF267: Caenorhabditi 20.0 8.8E+02 0.019 24.2 10.5 73 137-210 116-197 (353)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-72 Score=583.26 Aligned_cols=368 Identities=37% Similarity=0.609 Sum_probs=330.4
Q ss_pred HhhHHHHHHHHHhhhhHhhhhcC------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccCC
Q 013690 9 GMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNN 82 (438)
Q Consensus 9 ~~~~l~~~~~~~~l~rl~r~~~l------~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~ 82 (438)
.++.|..++++||||||.|++++ ..+++.+++|+.++++|++++|++||.||+||+||+++...||.+
T Consensus 193 ~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~------ 266 (727)
T KOG0498|consen 193 ESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRK------ 266 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc------
Confidence 34489999999999999999999 778899999999999999999999999999999998886555551
Q ss_pred CCCCCcceeeCCCCCccccccccCCCCCCCCCCCccchhhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCC
Q 013690 83 TGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSN 162 (438)
Q Consensus 83 ~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~ 162 (438)
.+|+...+......+..|+||+ .+++.+|++|+||+++||||+|||+++|+|
T Consensus 267 ----------------~tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~ 318 (727)
T KOG0498|consen 267 ----------------ATWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANN 318 (727)
T ss_pred ----------------cccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCC
Confidence 1677764311112344467774 556679999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHH
Q 013690 163 AWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVE 242 (438)
Q Consensus 163 ~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~ 242 (438)
..|++|+|++|++|.++||++||||+++++....+.++|+.++.++++||++|++|++||+||++|++|+|...+|+||+
T Consensus 319 ~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee 398 (727)
T KOG0498|consen 319 MGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEE 398 (727)
T ss_pred cHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeec
Q 013690 243 SSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKE 322 (438)
Q Consensus 243 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 322 (438)
++|+.||+.||++|..+++.++++++|+|++++++++.+|+.++++..|+|||+|++|||+.++||||++|.+++..
T Consensus 399 ~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~--- 475 (727)
T KOG0498|consen 399 ELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT--- 475 (727)
T ss_pred HHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh---
Q 013690 323 RTNG-SANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE--- 398 (438)
Q Consensus 323 ~~~g-~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~--- 398 (438)
.+| +... ...|++||+|||.-+.++++ . |+++||+|++.|+++.|+++||..++++
T Consensus 476 -~~~g~~~~------------~~~L~~Gd~~GeEl~~~~~~------~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~ 535 (727)
T KOG0498|consen 476 -TDGGGFFV------------VAILGPGDFFGEELLTWCLD------L-PQTRTVRALTYCELFRLSADDLKEVLQQFRR 535 (727)
T ss_pred -ccCCceEE------------EEEecCCCccchHHHHHHhc------C-CCCceeehhhhhhHHhccHHHHHHHHHHhHH
Confidence 443 3333 89999999999665555553 1 3578999999999999999999999999
Q ss_pred ---hhHHhHhhhccccchhHHHHHHHHHHHHHHHhhhhh
Q 013690 399 ---HQVASSTEFNSNYSVKDAARIIQLAWRRRYSSRNLL 434 (438)
Q Consensus 399 ---p~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
..+++.+++++.+||.|+++.||.||| |+.+|...
T Consensus 536 ~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r-~~~~~~~~ 573 (727)
T KOG0498|consen 536 LGSKFLQHTFRYYSHLWRTWAACFIQAAWR-RHIKRKGE 573 (727)
T ss_pred HHHHHHHhHHHHhhhhhhhhhhhhHHHHHH-HHHHhhcc
Confidence 678889999999999999999999999 77776543
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-53 Score=413.94 Aligned_cols=320 Identities=20% Similarity=0.324 Sum_probs=269.9
Q ss_pred hhhhHhhhhcC---ccchhhhhhHHHHH--HHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccCCCCCCCcceeeCC
Q 013690 21 FVLRMIRIYPW---TLGKLGEATWAIAA--FNL-LLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYD 94 (438)
Q Consensus 21 ~l~rl~r~~~l---~~~~~~~~~~~~~~--~~l-~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 94 (438)
++.||+|++|+ ....-..+.|..+. .++ ..+++++||.||++|+|+...
T Consensus 101 r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~------------------------- 155 (536)
T KOG0500|consen 101 RLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAI------------------------- 155 (536)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhc-------------------------
Confidence 46677777776 11122233444443 223 345678999999999999322
Q ss_pred CCCccccccccCCCCCCCCCCCccchhhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHH
Q 013690 95 SLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTI 174 (438)
Q Consensus 95 ~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l 174 (438)
+...++|....-. +|....++ ..++..+|+.|+||+..||||+|- -.+|.++.|.+|.|+-.+
T Consensus 156 g~~~d~wvY~~i~--d~~~~~c~--------------~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~L 218 (536)
T KOG0500|consen 156 GFTTDDWVYPKIN--DPEFATCD--------------AGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTL 218 (536)
T ss_pred CccccccccCCcc--Cccccccc--------------hhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHH
Confidence 1345679876421 11111111 355889999999999999999996 467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHH
Q 013690 175 SGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRR 254 (438)
Q Consensus 175 ~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ 254 (438)
+|+++||-|+|++++++++++....+|+.+|+.+++||+.|++|+.||.||.+||.|.|.+++..||+++++.||+.|+.
T Consensus 219 iGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~a 298 (536)
T KOG0500|consen 219 IGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKA 298 (536)
T ss_pred HHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCccccccc
Q 013690 255 NIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSR 334 (438)
Q Consensus 255 ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~ 334 (438)
+|+.+++.+.|+++++|+++++.++.+++.+++++.|.|||+|+++||.+.+||+|.+|.+++.. .+|+. +
T Consensus 299 eIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~----dDg~t-~---- 369 (536)
T KOG0500|consen 299 EIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA----DDGVT-V---- 369 (536)
T ss_pred HhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe----cCCcE-E----
Confidence 99999999999999999999999999999999999999999999999999999999999999999 56644 3
Q ss_pred CcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 335 DNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 335 ~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
...+++|++|||+++++ .. ..-+..+|+++|++++++++++|+|+|+.+++++ |+-+
T Consensus 370 --------~~~L~~G~~FGEisIln-i~--g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 370 --------FVTLKAGSVFGEISILN-IK--GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred --------EEEecCCceeeeeEEEE-Ec--CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHH
Confidence 78999999999999975 22 2234458999999999999999999999999999 4433
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.3e-52 Score=459.60 Aligned_cols=294 Identities=17% Similarity=0.287 Sum_probs=260.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccCCCCCCCcceeeCCCCCccccccccCCCCCCCCCCCc
Q 013690 38 EATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILD 117 (438)
Q Consensus 38 ~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~ 117 (438)
...|...++.++.+++++||+||+||+++-.. +..+.+|+..... +
T Consensus 196 ~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~-------------------------~~~~~~Wi~~~~~-------~-- 241 (823)
T PLN03192 196 SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY-------------------------PHQGKTWIGAVIP-------N-- 241 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------------CCCCCchHHHhhh-------c--
Confidence 34566666666677788999999999999211 1234689865211 0
Q ss_pred cchhhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013690 118 FGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATR 197 (438)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~ 197 (438)
..+.+++.+|+.|+|||++|||||||||++|.|..|++|++++|++|+++|||+||++++++.+.+++
T Consensus 242 ------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~ 309 (823)
T PLN03192 242 ------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 309 (823)
T ss_pred ------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHH
Q 013690 198 PKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEE 277 (438)
Q Consensus 198 ~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~ 277 (438)
+.+|+++++.+++||+++++|++||.||++|+++.|+. +..+++++++.||++||.++..+++.+.++++|+|++++++
T Consensus 310 ~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~ 388 (823)
T PLN03192 310 TMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSRE 388 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHH
Confidence 99999999999999999999999999999999999976 56788999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHH
Q 013690 278 VLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELV 357 (438)
Q Consensus 278 ~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l 357 (438)
++.+++..++++.|.|||.|+.+||.++++|||.+|.|++... .++++.. +..+++|++|||.++
T Consensus 389 ~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~---~~~~e~~------------l~~l~~Gd~FGE~~~ 453 (823)
T PLN03192 389 ILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS---EGEKERV------------VGTLGCGDIFGEVGA 453 (823)
T ss_pred HHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe---cCCccee------------eEEccCCCEecchHH
Confidence 9999999999999999999999999999999999999999873 2344444 789999999999988
Q ss_pred HhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 358 AWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 358 l~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+.+ .|++++++|.++|+++.|++++|.++++. |+..
T Consensus 454 l~~---------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~ 490 (823)
T PLN03192 454 LCC---------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDN 490 (823)
T ss_pred hcC---------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHH
Confidence 732 15778999999999999999999999998 5433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-45 Score=357.75 Aligned_cols=315 Identities=17% Similarity=0.273 Sum_probs=269.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHhhccCCCCCCCcceeeCCCCCccccccccCCCCC
Q 013690 32 TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSA-IERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKP 110 (438)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~ 110 (438)
.++++ |.+-+..++.++.|.+++||+||+||.|| .|-. .+-.|....+||+.....
T Consensus 342 LD~Yl-EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~-------------------~~~~n~i~~dsWL~kLa~--- 398 (971)
T KOG0501|consen 342 LDHYL-EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR-------------------DEMDNTIQPDSWLWKLAN--- 398 (971)
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHHHHHHHhheeccchhee-------------------cccccccccchHHHHHHh---
Confidence 44555 34445666777788999999999999999 2211 011123456899988755
Q ss_pred CCCCCCccchhhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013690 111 QNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIY 190 (438)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~i 190 (438)
+.+.+|+|..-... ..+..++-.+.|+.|+||.++.|||||+|.|.|.|+.|++|++++|++|+++||-|+|+++.|
T Consensus 399 ~~~tpY~~~~s~~~---~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI 475 (971)
T KOG0501|consen 399 DIGTPYNYNLSNKG---TLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTI 475 (971)
T ss_pred hcCCCceeccCCCc---eeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566666311110 012467778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccc
Q 013690 191 LQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKE 270 (438)
Q Consensus 191 l~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~ 270 (438)
++++.+....|++.++.+.+|||-..+|+.|.+||..|.--.|...+|+|.+++|+--|..+|.+|..+++.+.+...|.
T Consensus 476 ~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpa 555 (971)
T KOG0501|consen 476 IQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPA 555 (971)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCC
Q 013690 271 FKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGD 350 (438)
Q Consensus 271 F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~ 350 (438)
|+-.|+..++.|+..++.....|||.|+..||..|.++||++|.+++.. ++. + +++|++||
T Consensus 556 FRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ-----DDE--V------------VAILGKGD 616 (971)
T KOG0501|consen 556 FRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ-----DDE--V------------VAILGKGD 616 (971)
T ss_pred eeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee-----cCc--E------------EEEeecCc
Confidence 9999999999999999999999999999999999999999999999998 222 2 79999999
Q ss_pred eechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 351 FWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 351 ~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
.||+.-.-.+ . ...+.++|+|+++|++..|.|+.+.++++-
T Consensus 617 VFGD~FWK~~----t---~~qs~ANVRALTYcDLH~IKrd~Ll~VLdF 657 (971)
T KOG0501|consen 617 VFGDEFWKEN----T---LGQSAANVRALTYCDLHMIKRDKLLKVLDF 657 (971)
T ss_pred cchhHHhhhh----h---hhhhhhhhhhhhhhhhhHHhHHHHHHHHHH
Confidence 9998743211 1 124678999999999999999999999887
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-44 Score=350.64 Aligned_cols=286 Identities=16% Similarity=0.305 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHhhccCCCCCCCcceeeCCCCCccccccccCCCCCCCCCCCccch
Q 013690 42 AIAAFNLLLYVLASHVFGALWYFSA-IERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGI 120 (438)
Q Consensus 42 ~~~~~~l~~~~l~~H~~aC~w~~i~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~ 120 (438)
...+..+-.++.+.|+.||++|..+ .|. .+.+-|+.+..
T Consensus 361 ~RV~rT~~YmlyilHinacvYY~~Sayqg--------------------------lG~~rWVydg~-------------- 400 (815)
T KOG0499|consen 361 YRVIRTTGYLLYILHINACVYYWASAYQG--------------------------LGTTRWVYDGE-------------- 400 (815)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhcc--------------------------cccceeEEcCC--------------
Confidence 3444445556677899999999999 322 23467886532
Q ss_pred hhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 013690 121 FQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKE 200 (438)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~ 200 (438)
...|++|+|||+.|++|+| |...|.|..|.+|..+.-+.|+++|+.+||.|-.++...+.++..
T Consensus 401 ---------------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~ 464 (815)
T KOG0499|consen 401 ---------------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNY 464 (815)
T ss_pred ---------------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH
Confidence 1269999999999999999 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHH
Q 013690 201 MTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLD 280 (438)
Q Consensus 201 ~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~ 280 (438)
|+..|+..-.||++.+||++.|.||+.+|+|.|+.++..||.++++.||..||.+++..++...+.++.+|++|+.+.+.
T Consensus 465 fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mir 544 (815)
T KOG0499|consen 465 FRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIR 544 (815)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhh
Q 013690 281 ALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWV 360 (438)
Q Consensus 281 ~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~ 360 (438)
.++.+++.+.|.|||.|+++||.+.+||+|..|+|+|.. -.++..+ +.+|.+|+.|||++++.
T Consensus 545 DmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG----Gp~~~~V------------l~tL~~GsVFGEISLLa- 607 (815)
T KOG0499|consen 545 DMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG----GPDGTKV------------LVTLKAGSVFGEISLLA- 607 (815)
T ss_pred HHHHHhhceeecCCceeeecccccceeEEeecceEEEec----CCCCCEE------------EEEecccceeeeeeeee-
Confidence 999999999999999999999999999999999999998 3344444 89999999999999973
Q ss_pred hccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 361 LRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 361 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
.....+|+++|+|.++|.+++|+++|+.+++.. |+-++..
T Consensus 608 -----igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL 648 (815)
T KOG0499|consen 608 -----IGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL 648 (815)
T ss_pred -----ecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence 222337999999999999999999999999998 5544433
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.46 E-value=7.7e-13 Score=124.60 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=104.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
...++.+|+|+.++++.++.+....+.+.|++|++|+++||.++.+|+|.+|.|+++.. .+|++..
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~---~~~~~~~----------- 71 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS---SQDRETT----------- 71 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc---CCCceEE-----------
Confidence 35788999999999999999999999999999999999999999999999999999984 2455544
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+.+|++||+.+++.. .++.++++|.++|+++.|++++|.+++.+ |.+.+.+
T Consensus 72 -i~~~~~g~~~g~~~~~~~---------~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~ 126 (236)
T PRK09392 72 -LAILRPVSTFILAAVVLD---------APYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAV 126 (236)
T ss_pred -EEEeCCCchhhhHHHhCC---------CCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 789999999999987621 14677999999999999999999999998 7766554
No 7
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.44 E-value=1.6e-12 Score=106.54 Aligned_cols=112 Identities=24% Similarity=0.400 Sum_probs=96.8
Q ss_pred ccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCC
Q 013690 270 EFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADG 349 (438)
Q Consensus 270 ~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G 349 (438)
+|..++++.+..++..++.+.+.||+.|+.+|++.+.+|+|.+|.+.+...+ .+|++.. +..+.+|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~--~~g~~~~------------~~~~~~g 66 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD--EDGREQI------------VGFLGPG 66 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEecCCc
Confidence 4778999999999999999999999999999999999999999999999854 5555544 7889999
Q ss_pred CeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 350 DFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 350 ~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
++||+..++.. .++..+++|.++|+++.|++++|.+++.+ |.+...
T Consensus 67 ~~~g~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 67 DLFGELALLGN---------GPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred cCcChHHHhcC---------CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 99999977521 14667999999999999999999999988 766554
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.39 E-value=4.7e-12 Score=116.94 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=96.2
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCe
Q 013690 272 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 351 (438)
Q Consensus 272 ~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~ 351 (438)
+.+|++.++.++..++.+.|++|++|+.+|++++.+|||.+|.++++..+ .+|++.. +..+++|++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~--~~g~~~~------------~~~~~~g~~ 71 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQGDF 71 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCE
Confidence 34899999999999999999999999999999999999999999999754 5676665 789999999
Q ss_pred echhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 352 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 352 FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
||+.+++. ..+++.++++|.++|+++.|++++|.+++.+ |.+...
T Consensus 72 ~g~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~ 117 (211)
T PRK11753 72 IGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMA 117 (211)
T ss_pred Eeehhhcc--------CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHH
Confidence 99997752 1124667899999999999999999999999 777654
No 9
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=5.2e-12 Score=99.81 Aligned_cols=88 Identities=23% Similarity=0.289 Sum_probs=75.8
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCC
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLS 367 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~ 367 (438)
++.|+||++|+++|+..+++|||.+|.+.+...+ .++.... +..+++|++||+.+++...
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~--~~~~~~~------------~~~~~~g~~~g~~~~~~~~------ 60 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSIN--EDGKEQI------------IFFLGPGDIFGEIELLTGK------ 60 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEET--TTSEEEE------------EEEEETTEEESGHHHHHTS------
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEece--ecceeee------------ecceeeeccccceeecCCC------
Confidence 3689999999999999999999999999999954 4444433 7899999999999887421
Q ss_pred CCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 368 NIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 368 ~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
++..+++|.++|+++.|++++|.+++++
T Consensus 61 ---~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 88 (91)
T PF00027_consen 61 ---PSPFTVIALTDSEVLRIPREDFLQLLQQ 88 (91)
T ss_dssp ---BBSSEEEESSSEEEEEEEHHHHHHHHHH
T ss_pred ---ccEEEEEEccCEEEEEEeHHHHHHHHHh
Confidence 4677999999999999999999999987
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2e-11 Score=100.57 Aligned_cols=108 Identities=25% Similarity=0.361 Sum_probs=93.3
Q ss_pred ccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCC
Q 013690 270 EFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADG 349 (438)
Q Consensus 270 ~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G 349 (438)
+|.+++++.++.++..++.+.+.+|++|+++|++.+.+|||.+|.+.++..+ .+|.+.. +..+.+|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~--~~g~~~~------------~~~~~~g 66 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVL--EDGREQI------------LGILGPG 66 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEEC--CCCceEE------------EEeecCC
Confidence 4778999999999999999999999999999999999999999999999854 4555544 7899999
Q ss_pred CeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 350 DFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 350 ~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
++||+..++.. ...++..++.|.++|+++.++.+++.+.+..
T Consensus 67 ~~~g~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 108 (120)
T smart00100 67 DFFGELALLTN-------SRRAASATAVALELATLLRIDFRDFLQLLQE 108 (120)
T ss_pred ceechhhhccC-------CCcccceEEEEEeeEEEEccCHHHHHHHHHH
Confidence 99999977511 1114667899999999999999999999887
No 11
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.29 E-value=6.5e-12 Score=124.54 Aligned_cols=122 Identities=21% Similarity=0.353 Sum_probs=105.2
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 338 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 338 (438)
+.+..+|+++|+|+++|++.+.+++..++...|..|+.|+++|+.++.+|+|.+|.|.+...++. .+.+..
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~-~~q~~~-------- 338 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEG-STQPQE-------- 338 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCC-CCchhH--------
Confidence 44678999999999999999999999999999999999999999999999999999999985311 122332
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcce-EEEEEecHHHHHHHhhh-hhHH
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKN-VEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+..||+|||-+|+.. -.|++++.|..+ ++++.|+|+.|.+++.. .+++
T Consensus 339 ----lr~l~kGd~FGE~al~~e---------dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 339 ----LRTLNKGDYFGERALLGE---------DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred ----HhhccccchhhHHHhhcc---------CccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 899999999999998731 158899999998 99999999999999988 5555
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.29 E-value=1.6e-11 Score=115.00 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=87.7
Q ss_pred HHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHh
Q 013690 280 DALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAW 359 (438)
Q Consensus 280 ~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~ 359 (438)
..+....+.+.|++|++|+.+||+.+.+|||.+|.|.++..+ .+|++.. +..+.+|++||+.+++.
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~--~~G~e~~------------~~~~~~g~~~G~~~~~~ 90 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATL--ANGKVSL------------IDFFAAPCFIGEIELID 90 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEee------------eeecCCCCeEEeehhhc
Confidence 357778889999999999999999999999999999999865 6777765 78999999999997652
Q ss_pred hhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 360 VLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 360 ~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
. .+++++++|.++|+++.+++++|.+++.+ |.+...
T Consensus 91 ~---------~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~ 127 (226)
T PRK10402 91 K---------DHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRK 127 (226)
T ss_pred C---------CCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHH
Confidence 1 25777999999999999999999999988 666554
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.29 E-value=4.8e-11 Score=109.60 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=100.3
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccccee
Q 013690 266 KNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDH 345 (438)
Q Consensus 266 ~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 345 (438)
...+.|...+......+....+.+.+++|+.|+.+||+++.+|+|.+|.++++... .+|.+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~ 68 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANT--EDGREII------------LGF 68 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEEC--CCCcEEE------------EEE
Confidence 34566776777777777789999999999999999999999999999999999965 6676665 789
Q ss_pred ccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 346 LADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 346 l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+++|++||+.+++.. .++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 69 ~~~g~~fg~~~l~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~ 121 (214)
T COG0664 69 LGPGDFFGELALLGG---------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALL 121 (214)
T ss_pred ecCCchhhhHHHhcC---------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHH
Confidence 999999999988631 15778999999999999999999999998 66665544
No 14
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.28 E-value=2.5e-11 Score=94.08 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQ 192 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~ 192 (438)
.|..|+||+++|+||+||||+.|.+...++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5888999999999999999999999999999999999999999999999999875
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.28 E-value=3.9e-11 Score=112.83 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=95.0
Q ss_pred hccccccccCcHHHHHHHHhhcce-eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccc
Q 013690 265 LKNVKEFKTLDEEVLDALCDCVKP-AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 343 (438)
Q Consensus 265 l~~i~~F~~~s~~~l~~l~~~l~~-~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (438)
+++.+.|-.++++.++.|....+. +.|.+||.|+++||+++++|+|.+|.|+++..+ .+|++.. +
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~--~~G~e~i------------~ 80 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTIT--EQGDEQI------------T 80 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEEC--CCCCEEE------------E
Confidence 344445556999999999988864 679999999999999999999999999999865 6677655 7
Q ss_pred eeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 344 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 344 ~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
..+.+|++||+.+++. . +...+++|.++|+++.|++++|.+++.+ |.+...
T Consensus 81 ~~~~~gd~~g~~~~~~-----~-----~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~ 132 (235)
T PRK11161 81 GFHLAGDLVGFDAIGS-----G-----QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQ 132 (235)
T ss_pred EeccCCceeccccccC-----C-----CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHH
Confidence 7889999999875431 0 2334899999999999999999999998 666544
No 16
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=7.4e-12 Score=119.05 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=98.6
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.+++.-+|++++++.+.++...|.++.+..|+.|+++||.++.+|+|.+|+++++. +|.-
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv-----~~~~------------- 182 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV-----NGTY------------- 182 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE-----CCeE-------------
Confidence 4566777799999999999999999999999999999999999999999999999999 3332
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
+..+++|..|||.+++++ +||.+|+.|.+++.+|.|++..|.+++-.
T Consensus 183 -v~~~~~g~sFGElALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~ 229 (368)
T KOG1113|consen 183 -VTTYSPGGSFGELALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMK 229 (368)
T ss_pred -EeeeCCCCchhhhHhhhC---------CCcccceeeccccceEEEeeceeEEEeec
Confidence 689999999999999752 37999999999999999999999988776
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.27 E-value=8.5e-12 Score=123.73 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCccccccc
Q 013690 255 NIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSR 334 (438)
Q Consensus 255 ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~ 334 (438)
.=..++..+.+.+..|++++..+.+.+++..|.+..|.+|..|+++||+++.+|.+.+|+++|.. .|.-
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~-----~g~l------ 214 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR-----EGKL------ 214 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee-----CCee------
Confidence 34556667888889999999999999999999999999999999999999999999999999998 3433
Q ss_pred CcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 335 DNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 335 ~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
+..+++|..|||.++++++ +|+++|+|+++|+++.|+|+-|+.|+..
T Consensus 215 --------l~~m~~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 215 --------LGKMGAGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred --------eeccCCchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7899999999999999754 5999999999999999999999999988
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.21 E-value=8.7e-11 Score=118.08 Aligned_cols=133 Identities=21% Similarity=0.254 Sum_probs=111.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+++.++|.|+.++++.+.+|...++...|.+||+|+..|.+.+++|+|.+|.|++.. .+|. .
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~----~~g~--v----------- 68 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS----DGGE--V----------- 68 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc----CCCe--e-----------
Confidence 4678899999999999999999999999999999999999999999999999999999 4554 2
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh-hccccchhHHHHH
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE-FNSNYSVKDAARI 419 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r-~~s~~~~~~~~~~ 419 (438)
+..+..|+.||..+++....+ ...+.|.+++-+|.|+++.|.++..+ |.+++.|. ..+.+.+..++..
T Consensus 69 -~~~~~~gdlFg~~~l~~~~~~---------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~ 138 (610)
T COG2905 69 -LDRLAAGDLFGFSSLFTELNK---------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRL 138 (610)
T ss_pred -eeeeccCccccchhhcccCCC---------cceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998753321 12677888999999999999999999 99998776 4444555455545
Q ss_pred HH
Q 013690 420 IQ 421 (438)
Q Consensus 420 ~~ 421 (438)
-|
T Consensus 139 ~e 140 (610)
T COG2905 139 AE 140 (610)
T ss_pred Hh
Confidence 44
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.20 E-value=1.8e-10 Score=117.41 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=96.0
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++++|++++++.+++++..++.+.|.+||+|+++||..+.+|+|.+|.|+++..+ .+| +..
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~--~~g-e~~----------- 72 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA--EEE-SRP----------- 72 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC--CCC-cEE-----------
Confidence 456789999999999999999999999999999999999999999999999999999854 444 433
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
+..+++|++||+. + . . .++.++++|.++|+++.|++++|..+...
T Consensus 73 -l~~l~~Gd~fG~~-l-~---~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~ 117 (413)
T PLN02868 73 -EFLLKRYDYFGYG-L-S---G------SVHSADVVAVSELTCLVLPHEHCHLLSPK 117 (413)
T ss_pred -EEEeCCCCEeehh-h-C---C------CCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence 7889999999975 3 1 1 14778999999999999999999877665
No 20
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.06 E-value=1.1e-09 Score=102.81 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=82.9
Q ss_pred HHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhh
Q 013690 281 ALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWV 360 (438)
Q Consensus 281 ~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~ 360 (438)
.+....+.+.|++|++|+.+||.++.+|||.+|.|+++..+ .+|++.. +..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~--~~G~e~i------------~~~~~~Gd~fG~~~---- 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLL--SDGRRQI------------GAFHLPGDVFGLES---- 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEEecCCceecccC----
Confidence 45566788999999999999999999999999999999865 6777655 78889999999641
Q ss_pred hccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 361 LRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 361 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
..++..+++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 95 --------~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l 132 (230)
T PRK09391 95 --------GSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARAL 132 (230)
T ss_pred --------CCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHH
Confidence 013567999999999999999999999988 6666543
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.05 E-value=1.1e-09 Score=99.57 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=76.3
Q ss_pred CcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCcc
Q 013690 294 HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMST 373 (438)
Q Consensus 294 ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~ 373 (438)
|+.|+.+||+.+.+|+|.+|.|+++..+ .+|++.. +..+++|++||+.+++.+. ..++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~--~~G~e~~------------l~~~~~g~~~G~~~~~~~~-------~~~~~ 59 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVY--ESGEEIT------------VALLRENSVFGVLSLITGH-------RSDRF 59 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeC--CCCcEee------------eEEccCCCEeeeeeeccCC-------CCccc
Confidence 7899999999999999999999999865 6777765 8899999999998775311 11345
Q ss_pred ceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 374 RSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 374 ~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
.+++|.++|+++.+++++|++++.+ |.+...+-
T Consensus 60 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~ 93 (193)
T TIGR03697 60 YHAVAFTRVELLAVPIEQVEKAIEEDPDLSMLLL 93 (193)
T ss_pred eEEEEecceEEEEeeHHHHHHHHHHChHHHHHHH
Confidence 6899999999999999999999998 76665433
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=5.3e-10 Score=106.57 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=106.1
Q ss_pred HHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCc
Q 013690 257 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDN 336 (438)
Q Consensus 257 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~ 336 (438)
...++.+.|+++|++..+.......++..+.++.|.+|+.|+.+|++++.+|+|.+|+|.+... .++ ..
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~----~~~-v~------ 302 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKK----RDG-VE------ 302 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhc----cCC-eE------
Confidence 3456788999999999999999999999999999999999999999999999999999999882 222 32
Q ss_pred ccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh--hhHHhHhh
Q 013690 337 SKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE--HQVASSTE 406 (438)
Q Consensus 337 ~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~--p~l~~~~r 406 (438)
+ .++.|++|||.+++... ||.++|.|.+...+..++++.|+.++.. ..+++...
T Consensus 303 ------v-kl~~~dyfge~al~~~~---------pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilkr~~~ 358 (368)
T KOG1113|consen 303 ------V-KLKKGDYFGELALLKNL---------PRAATVVAKGRLKCAKLDKPRFERLLGPCQDILKRNRS 358 (368)
T ss_pred ------E-EechhhhcchHHHHhhc---------hhhceeeccCCceeeeeChHHHHHHhhHHHHHHHhhhh
Confidence 4 99999999999997532 6889999999999999999999999998 44444333
No 23
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.6e-09 Score=107.90 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 013690 141 HCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKE 200 (438)
Q Consensus 141 ~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~ 200 (438)
.+++||++|||||||||++|.|..-++++..+.++|+++.|.=|..|-+=+....+..++
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKA 439 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHH
Confidence 389999999999999999999999999999999999999998766655555444433333
No 24
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.96 E-value=5.2e-09 Score=95.92 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=71.7
Q ss_pred hcceeeeCCCcEEEecCC--CCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhc
Q 013690 285 CVKPAFYFKHTHIVLEGD--PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLR 362 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd--~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~ 362 (438)
..+...|++|++|+.+|| +.+.+|+|.+|.|+++..+ .+|++.. +..+.+|++||+.+++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~--~~G~e~~------------l~~~~~Gd~~G~~~~~~--- 67 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVD--DEGNALT------------LRYVRPGEYFGEEALAG--- 67 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE------------EEEecCCCeechHHhcC---
Confidence 467789999999999999 7799999999999999965 7787766 88899999999975531
Q ss_pred cCCCCCCCCccceEEEcceEEEEEecHHHH
Q 013690 363 DRSLSNIPMSTRSVQALKNVEAFGLMAHDL 392 (438)
Q Consensus 363 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f 392 (438)
.++++++.|.++|+++.|++++|
T Consensus 68 -------~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 68 -------AERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -------CCCCceEEEcCceEEEEEEHHHc
Confidence 14667899999999999998776
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.1e-08 Score=97.32 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=40.7
Q ss_pred HHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013690 142 CFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNI 187 (438)
Q Consensus 142 slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i 187 (438)
|++||++|||||||||..|.|..-+++..++.+.|++-.|.-+-.|
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 8999999999999999999999999999999999987776654433
No 26
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.47 E-value=1.2e-06 Score=79.19 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHHHhhcccCCcccccC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 013690 133 PDFPQKFLHCFRWGLRNLSCFGQNLQTSS-----NAWENFFV-ILVTISGLVLMLFLIGNI 187 (438)
Q Consensus 133 ~~~~~~Yi~slYwa~~tmtTvGyGdi~p~-----~~~E~~~~-i~~~l~g~~~fayiig~i 187 (438)
.+..+.|..|+||++.++||.|+||+.|. +..+.++. +++.+.+.++++.++|.|
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 44556799999999999999999999886 88999999 666666668888888865
No 27
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.46 E-value=3.2e-06 Score=85.14 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYL 191 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il 191 (438)
.+..|+||+++|+|||||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999999999999999999887644
No 28
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.8e-06 Score=85.48 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 013690 133 PDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHM 212 (438)
Q Consensus 133 ~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m 212 (438)
++-..-|..|++|.+.|+|||||||.+|+|-.-++.+.++.++|..+||.--|.+++=+.-+-+ ++.+ =++|-
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~R-----QKHf~ 336 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHR-----QKHFN 336 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHH-----HHHHH
Confidence 3344579999999999999999999999999999999999999999999887777765543211 1111 13455
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 013690 213 PIQKLSRSVQQQLKIYQR 230 (438)
Q Consensus 213 ~~~~ip~~L~~ri~~y~~ 230 (438)
++++.-..|.+-.-+||.
T Consensus 337 rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYA 354 (654)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 667777777766666553
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.16 E-value=1.2e-06 Score=88.09 Aligned_cols=135 Identities=12% Similarity=0.205 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccC
Q 013690 136 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQ 215 (438)
Q Consensus 136 ~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~ 215 (438)
.-.|-.|+|+.++||+||||||+...|...++|.+|.++.|..+||-.+..|.+++.+.++-.-+|+..-- ++
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-------kk 358 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-------KK 358 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-------Ce
Confidence 34699999999999999999999999999999999999999999999999999999876654444432110 11
Q ss_pred CC---CHHHHHHHHHHHHHH-HhcCCCCC-HHHHHhhccHHHHHHHHHHHHHHHhcccccccc--CcHHHHH
Q 013690 216 KL---SRSVQQQLKIYQRYI-WRKPDTID-VESSLSILPKELRRNIKRELCLDLLKNVKEFKT--LDEEVLD 280 (438)
Q Consensus 216 ~i---p~~L~~ri~~y~~~~-~~~~~~~~-~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~--~s~~~l~ 280 (438)
+| -.-..+.|.+|++-. ++.....+ |--+|...||.|.-| .+++..+.++.+|++ +++..+.
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 11 111233445555433 33333344 345678889888655 346667788888887 5554443
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.94 E-value=6.6e-05 Score=73.92 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhcccCCcc--cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 137 QKFLHCFRWGLRNLSCFGQNL--QTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGyGd--i~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
..+..+|+|++.|+||+|||. ++|....-.++.++=+++|.++.|+++|.+-.=++.-.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368889999999999999998 567777777888888999999999999988777765443
No 31
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.90 E-value=2.5e-06 Score=82.30 Aligned_cols=53 Identities=13% Similarity=0.323 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 013690 141 HCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLF----LIGNIQIYLQT 193 (438)
Q Consensus 141 ~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fay----iig~i~~il~~ 193 (438)
.++++.++||||.||||.+|.|..-++|..++.+.|+++.|. |+++++.|..+
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 489999999999999999999999999999999999988775 66788888754
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.0003 Score=69.94 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Q 013690 135 FPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPI 214 (438)
Q Consensus 135 ~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 214 (438)
....|+.|+.....|..++||||++|.|.--+.++++.-++|+++-|.++..|+.=+. ..+--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4557999999999999999999999999999999999999999999999988876553 23333457778777
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 013690 215 QKLSRSVQQQLKIYQRYIW 233 (438)
Q Consensus 215 ~~ip~~L~~ri~~y~~~~~ 233 (438)
.++-+++++-..+-++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776665544444333
No 33
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.81 E-value=2.2e-05 Score=80.00 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
-+..|+||+++++||+|||+++|.|...++++|+..++|.-++..+++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999999999999999999999999999998764
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.62 E-value=5.3e-05 Score=80.38 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=82.3
Q ss_pred HHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHH
Q 013690 278 VLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELV 357 (438)
Q Consensus 278 ~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l 357 (438)
++..+-..+......||+.++++||..+++|+|..|.++..... ..|+... +..++.||.+|+...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~--~~~k~~i------------~~EygrGd~iG~~E~ 565 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQ--SGGKKEI------------VGEYGRGDLIGEVEM 565 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhc--cCccchh------------hhhccCcceeehhHH
Confidence 45566667788889999999999999999999999999988732 3333323 789999999999987
Q ss_pred HhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 358 AWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 358 l~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
++. .+|..|+.|..++++.+||..-|..+..+ |++-
T Consensus 566 lt~---------~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~ 602 (1158)
T KOG2968|consen 566 LTK---------QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVV 602 (1158)
T ss_pred hhc---------CCccceEEEEeehhhhhccHHHHHHHHHhccHHH
Confidence 642 14677999999999999999988887766 5543
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.27 E-value=0.0082 Score=54.70 Aligned_cols=94 Identities=7% Similarity=-0.034 Sum_probs=70.9
Q ss_pred HHHHHHhhcceeeeCCCcEE-EecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhH
Q 013690 278 VLDALCDCVKPAFYFKHTHI-VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEEL 356 (438)
Q Consensus 278 ~l~~l~~~l~~~~~~pge~I-~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ 356 (438)
..+.+...-++..+.+|..+ .......+.++++.+|.|.+.. .++ .. +.+..+...||-..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr----~d~--ll------------~~t~~aP~IlGl~~ 75 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR----EEN--VL------------IGITQAPYIMGLAD 75 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe----cCC--eE------------EEeccCCeEeeccc
Confidence 45566777788899999997 5444445679999999999954 343 22 67788889999764
Q ss_pred HHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 357 VAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 357 ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
.+. +. ...+.++|.++|+++.+++++|.+++++
T Consensus 76 ~~~---~~------~~~~~l~ae~~c~~~~i~~~~~~~iie~ 108 (207)
T PRK11832 76 GLM---KN------DIPYKLISEGNCTGYHLPAKQTITLIEQ 108 (207)
T ss_pred ccC---CC------CceEEEEEcCccEEEEeeHHHHHHHHHH
Confidence 321 11 1335799999999999999999999999
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.21 E-value=0.0025 Score=68.14 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=80.1
Q ss_pred HHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech-hHHHh
Q 013690 281 ALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE-ELVAW 359 (438)
Q Consensus 281 ~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe-~~ll~ 359 (438)
+++.+++...+..||+|++.|+..+.+|.+.+|.+.+...+ .+|++.. +....+|+.|-. .+++.
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~--~~g~~~l------------lk~V~~G~~~tSllSiLd 175 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRN--GDGKEYL------------LKTVPPGGSFTSLLSILD 175 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecC--CCCceee------------EeeccCCCchHhHHHHHH
Confidence 44578888999999999999999999999999999999854 5555554 788999976654 34543
Q ss_pred hhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 360 VLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 360 ~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
.+.. ..+ +.++..++|.++|.+..++...|.++...
T Consensus 176 ~l~~-~ps--~~~~i~akA~t~~tv~~~p~~sF~~~~~k 211 (1158)
T KOG2968|consen 176 SLPG-FPS--LSRTIAAKAATDCTVARIPYTSFRESFHK 211 (1158)
T ss_pred hccC-CCc--ccceeeeeeecCceEEEeccchhhhhhcc
Confidence 3322 111 35777899999999999999999999887
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00017 Score=68.58 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQ 192 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~ 192 (438)
+..-|||||+|.+||+|||-.+|.|+.-++|+|+.-++|+-+--..+.++++=+.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 6777999999999999999999999999999999999998877777777766543
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.00094 Score=63.67 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccCC-------hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSN-------AWE-NFFVILVTISGLVLMLFLIGNIQIYLQTKATR 197 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~-------~~E-~~~~i~~~l~g~~~fayiig~i~~il~~~~~~ 197 (438)
.|+.|+||.+.|+||+|+||.+|.- ..+ +.++.+.+++|..+++-.++.+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5899999999999999999998732 233 35677778899999988888888777766543
No 39
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.70 E-value=0.034 Score=47.73 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=80.2
Q ss_pred CcHHHHHHHHhh-cceeeeCCCcEEEecCC-CCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCe
Q 013690 274 LDEEVLDALCDC-VKPAFYFKHTHIVLEGD-PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 351 (438)
Q Consensus 274 ~s~~~l~~l~~~-l~~~~~~pge~I~~~Gd-~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~ 351 (438)
.|.....+++.. .+.....+|+.-.-||. +.|.+-++++|.+.+.. +|.- +..+.|-++
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-----~g~f--------------LH~I~p~qF 75 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-----DGRF--------------LHYIYPYQF 75 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-----CCEe--------------eEeeccccc
Confidence 677777888777 56677899999998885 46889999999999998 4433 344455554
Q ss_pred echhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 352 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 352 FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
...-.... .++. ....-..|+.|.++|..+..+|+.+..++.. |.++..|.
T Consensus 76 lDSPEW~s-~~~s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~ 127 (153)
T PF04831_consen 76 LDSPEWES-LRPS---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFS 127 (153)
T ss_pred ccChhhhc-cccC---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHH
Confidence 44433321 1111 1113456999999999999999999999999 88887776
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.26 E-value=0.012 Score=61.02 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=86.1
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeee-CCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccc
Q 013690 261 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFY-FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 339 (438)
Q Consensus 261 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~-~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 339 (438)
..++..+.|-|.+++-+..++||..|-.... ..|.+|...|+.-|..+.|+.|.|++.. ++|+.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~----PdGk~----------- 343 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK----PDGKR----------- 343 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec----CCCce-----------
Confidence 3567788899999999999999998877665 6899999999999999999999999999 77765
Q ss_pred cccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 340 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 340 ~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
..+.-|+.||..--. +.+. .....| .-..+|+..+|...|+-.+++.
T Consensus 344 ----e~l~mGnSFG~~PT~---dkqy-m~G~mR----TkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 344 ----EELKMGNSFGAEPTP---DKQY-MIGEMR----TKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred ----EEeecccccCCCCCc---chhh-hhhhhh----eecccceEEEeehhhHHHHHHH
Confidence 457789999965211 0000 000011 2467899999999999999988
No 41
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.0023 Score=65.10 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWEN--------FFVILVTISGLVLMLFLI 184 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~--------~~~i~~~l~g~~~fayii 184 (438)
-|+.|+||+++++||+|+||++|.+...+ ....+..++|...++.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 58889999999999999999999988755 577777778877777666
No 42
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.036 Score=54.40 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcccCCcccc--cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQT--SSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~--p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
-...+|-|++-|=||+|||--. ...+.-.+..++=+++|+++-|+++|.+-.=++.-
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3566899999999999999643 33444455556667789999999998876655443
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.35 E-value=0.057 Score=56.30 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=73.2
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccc
Q 013690 263 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 342 (438)
Q Consensus 263 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (438)
..|.+...|.++-..-+..++...+.+.++.+.++++.|+.+.+.|++++|.|-+..
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----------------------- 93 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----------------------- 93 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------------------
Confidence 356667788888888899999999999999999999999999999999999988766
Q ss_pred ceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEec
Q 013690 343 KDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLM 388 (438)
Q Consensus 343 ~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~ 388 (438)
...-|..+||.. ... .|+.++..+..++..+++
T Consensus 94 -qi~mp~~~fgkr---------~g~---~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 -QIYMPYGCFGKR---------TGQ---NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred -ceecCccccccc---------ccc---ccccceeeecccceeeee
Confidence 234466778854 222 277888899999998884
No 44
>COG4709 Predicted membrane protein [Function unknown]
Probab=91.14 E-value=1.2 Score=39.61 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCCHHHHHhhc--cHHHHHHHHHHHHHHHhccccccccCcHH
Q 013690 202 TLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRK--PDTIDVESSLSIL--PKELRRNIKRELCLDLLKNVKEFKTLDEE 277 (438)
Q Consensus 202 ~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~ 277 (438)
.+-++++++|++ ++|++.++.+..||+-++.+ ..+.+|+|+.++| |.++-.|+..+.-.+....-|-+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 345677888887 89999999999999888775 4677899999998 77888888887766666666666666554
Q ss_pred HHH
Q 013690 278 VLD 280 (438)
Q Consensus 278 ~l~ 280 (438)
.+.
T Consensus 82 ii~ 84 (195)
T COG4709 82 IIA 84 (195)
T ss_pred HHH
Confidence 443
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=88.08 E-value=0.12 Score=52.70 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHH
Q 013690 140 LHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISG 176 (438)
Q Consensus 140 i~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g 176 (438)
..|+||.++|.+||||||-.|.--...++.++++.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icva 255 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVA 255 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHH
Confidence 4589999999999999999996544444444433333
No 46
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=84.93 E-value=5 Score=35.89 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCCHHHHHhhc--cHHHHHHHHHHHH
Q 013690 202 TLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRK--PDTIDVESSLSIL--PKELRRNIKRELC 261 (438)
Q Consensus 202 ~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~~ 261 (438)
++-+++++.+++ ++|++-++++.+||+-++.+ .+|.+|+++.++| |.++-+++..+..
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 455677888887 69999999999999988875 4577899999998 7777777776543
No 47
>PLN03223 Polycystin cation channel protein; Provisional
Probab=84.07 E-value=30 Score=40.11 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 167 FFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 167 ~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
.|..+++++..++.-++|+-|...+++.
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555433
No 48
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=81.46 E-value=2.4 Score=23.45 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 013690 415 DAARIIQLAWRRRYSSRNL 433 (438)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (438)
.++..||..|| .+..|+.
T Consensus 2 ~aai~iQ~~~R-~~~~Rk~ 19 (21)
T PF00612_consen 2 KAAIIIQSYWR-GYLARKR 19 (21)
T ss_dssp HHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHh
Confidence 46889999999 7766654
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.11 E-value=61 Score=35.46 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=48.2
Q ss_pred cccCCcccccCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHhhcccCCCCHHHHH
Q 013690 151 SCFGQNLQTSSNAW------ENFFVILVTISGLVLMLFLIGNIQIYLQTKATRP-KEMTLRMQEMNEHMPIQKLSRSVQQ 223 (438)
Q Consensus 151 tTvGyGdi~p~~~~------E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~-~~~~~~~~~i~~~m~~~~ip~~L~~ 223 (438)
.|+|+||....... -.+|.+++.++...++-.+|.-|++......+.+ .+.+.+-. .--.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 68999998653222 3455666666666677777777777777666655 45544443 3345567899999888
Q ss_pred H
Q 013690 224 Q 224 (438)
Q Consensus 224 r 224 (438)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 7
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=76.02 E-value=4.9 Score=29.28 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.2
Q ss_pred eeeCCCcEEEecCCCCC-eEEEEEecEEEEEe
Q 013690 289 AFYFKHTHIVLEGDPIY-EMLFIVQGKMWIYT 319 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~-~lyfI~~G~V~v~~ 319 (438)
..+.||+..-..-.... .+++|++|++.+..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~ 34 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV 34 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence 46788887655555555 89999999999986
No 51
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=70.10 E-value=9.4 Score=31.09 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHHhc----------CCCCCHHHHHhhccHHHHHHHHHH
Q 013690 216 KLSRSVQQQLKIYQRYIWRK----------PDTIDVESSLSILPKELRRNIKRE 259 (438)
Q Consensus 216 ~ip~~L~~ri~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~ei~~~ 259 (438)
-+|.+++..|..++.-.-.. ....+...++..||++||++|+..
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999988754332 123446789999999999999865
No 52
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=64.54 E-value=9.7 Score=32.20 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 134 DFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 134 ~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
........++++.+.+++. +.++..|.+...+++.++..+++.++.+..-+++++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455677789988888876 5567899999999999999999999999999999999875
No 53
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=60.78 E-value=14 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=24.1
Q ss_pred CeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 305 YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 305 ~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+++.+|++|.|.+.. .+|. ...+++||.|=
T Consensus 26 ~E~~~vleG~v~it~----~~G~---------------~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD----EDGE---------------TVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEE----TTTE---------------EEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEE----CCCC---------------EEEEcCCcEEE
Confidence 788899999999998 4443 35788999875
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=59.78 E-value=46 Score=27.87 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=32.9
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEE-eeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIY-TSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~-~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
+....+.||..+-..-....++++|++|++.+. . ++++ ...+.+||.+--
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-----~~g~--------------~~~L~aGD~i~~ 87 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-----ATGE--------------VHPIRPGTMYAL 87 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-----CCCE--------------EEEeCCCeEEEE
Confidence 344567888755332122247999999999998 4 2223 357899998764
No 55
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=58.08 E-value=47 Score=30.21 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=41.8
Q ss_pred hhccHHHHHHHHHHHHHHHhcccccccc-CcHHHHHHHHhhcceee--eCCCcEEEecCCCCC
Q 013690 246 SILPKELRRNIKRELCLDLLKNVKEFKT-LDEEVLDALCDCVKPAF--YFKHTHIVLEGDPIY 305 (438)
Q Consensus 246 ~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~-~s~~~l~~l~~~l~~~~--~~pge~I~~~Gd~~~ 305 (438)
..+|+. ..++...+...++.-.-.|+. .++....+......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 444555555554544445544 67778888899999988 999999999999865
No 56
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=55.79 E-value=26 Score=29.22 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=28.6
Q ss_pred hhcceeeeCCCcEE-EecCCCCCeEEEEEecEEEEEe
Q 013690 284 DCVKPAFYFKHTHI-VLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 284 ~~l~~~~~~pge~I-~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
..++...+.||+-+ .+.....++.|+|++|...+..
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~ 72 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI 72 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE
Confidence 35667778888885 5555557899999999999998
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=54.28 E-value=37 Score=29.75 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEE
Q 013690 304 IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVE 383 (438)
Q Consensus 304 ~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~ 383 (438)
.+++|++++|.+.+.. .++++.. ...+++|++|=.- ... ..+-++.++|.
T Consensus 48 tdE~FyqleG~~~l~v----~d~g~~~------------~v~L~eGd~flvP--------~gv------pHsP~r~~~t~ 97 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKV----TEEGKRE------------DVPIREGDIFLLP--------PHV------PHSPQRPAGSI 97 (159)
T ss_pred CceEEEEEcceEEEEE----EcCCcEE------------EEEECCCCEEEeC--------CCC------CcccccCCCcE
Confidence 6899999999999987 3433212 4688999988533 111 12445567888
Q ss_pred EEEecHHHHHH
Q 013690 384 AFGLMAHDLKH 394 (438)
Q Consensus 384 l~~L~~~~f~~ 394 (438)
++++.+..-..
T Consensus 98 ~LvIE~~r~~~ 108 (159)
T TIGR03037 98 GLVIERKRPQG 108 (159)
T ss_pred EEEEEeCCCCC
Confidence 88887765443
No 58
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=53.68 E-value=18 Score=21.01 Aligned_cols=20 Identities=50% Similarity=0.702 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 013690 414 KDAARIIQLAWRRRYSSRNLL 434 (438)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (438)
..++..||..|| .+..|+..
T Consensus 3 ~~aa~~IQa~~R-g~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWR-GYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHH-HHHHHHhh
Confidence 356789999999 77666543
No 59
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=53.21 E-value=2.4e+02 Score=29.47 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred ChhHHHHHH-HHHHHHhhcccCCcccccCChhhHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 013690 134 DFPQKFLHC-FRWGLRNLSCFGQNLQTSSNAWENFFVILVTI--SGLVLMLFLIGNIQIY 190 (438)
Q Consensus 134 ~~~~~Yi~s-lYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l--~g~~~fayiig~i~~i 190 (438)
+.|...+.| ++|++. .|++......+.|..+... +|.++-+.++..++.+
T Consensus 139 elw~~~vvS~lFW~fa-------ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFA-------NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777 999986 4888778888888887655 3333334444444443
No 60
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=52.40 E-value=52 Score=33.09 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccC
Q 013690 136 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQ 215 (438)
Q Consensus 136 ~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~ 215 (438)
.--|+.++=|++..+.+++-++.......-..+++++.+++.+.|-|.|..++..++--+.-..-.
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~-------------- 163 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIE-------------- 163 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--------------
Confidence 346999999999999988877662222333788888888888999999998888775422222222
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceee---eC
Q 013690 216 KLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAF---YF 292 (438)
Q Consensus 216 ~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~---~~ 292 (438)
++..+.+.+.+.-...........+. ..|.+= .. -.-.+..+.+..+.+-+.+++..-.... ..
T Consensus 164 ---~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-------i~a~~~GYvq~Id~~~L~~~a~~~~~~i~l~~~ 230 (371)
T PF10011_consen 164 ---EDARKAIDRLYPEPDGGARPAEPPEE--PPPEEA-QP-------IRAPRSGYVQAIDYDRLVELAEEHDVVIRLEVR 230 (371)
T ss_pred ---HHHHHHHHHhhcCccccCCcCCCCCC--cCCCCc-eE-------EecCCCcEEEEecHHHHHHHHHHCCcEEEEEeC
Confidence 23333333333222211110000000 000000 00 1223445777888888888887755443 57
Q ss_pred CCcEEE
Q 013690 293 KHTHIV 298 (438)
Q Consensus 293 pge~I~ 298 (438)
|||+|.
T Consensus 231 ~G~fV~ 236 (371)
T PF10011_consen 231 PGDFVV 236 (371)
T ss_pred CCCeEC
Confidence 888875
No 61
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=50.49 E-value=39 Score=28.83 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=36.5
Q ss_pred hcceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 285 CVKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
.+....+.||...-..-.. .+++++|++|...+...+ .++.+.. ...+++||.+=.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~--~~~~~~~------------~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD--PNGNKVY------------DARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe--CCCCeEE------------EEEecCCCEEEE
Confidence 4455667888876544333 568999999999998732 2222322 467888887654
No 62
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=48.10 E-value=27 Score=37.71 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=14.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhh
Q 013690 410 NYSVKDAARIIQLAWRRRYSSR 431 (438)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
.+|..+|+ .||+||| |+.+|
T Consensus 693 r~~d~~A~-~IQkAWR-rfv~r 712 (1106)
T KOG0162|consen 693 RKWDGMAR-RIQKAWR-RFVAR 712 (1106)
T ss_pred HHhhHHHH-HHHHHHH-HHHHH
Confidence 36677766 8999999 77443
No 63
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=47.79 E-value=51 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcC---------C-C-C-C-HHHHHhhccHHHHHHHHHHHHHH
Q 013690 216 KLSRSVQQQLKIYQRYIWRKP---------D-T-I-D-VESSLSILPKELRRNIKRELCLD 263 (438)
Q Consensus 216 ~ip~~L~~ri~~y~~~~~~~~---------~-~-~-~-~~~il~~Lp~~Lr~ei~~~~~~~ 263 (438)
-+|.+++.+|..-....-... . . . + ..++|..||++||.||.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478999998855433221100 0 0 0 1 26899999999999998887654
No 64
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=47.25 E-value=1e+02 Score=21.97 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhcc
Q 013690 200 EMTLRMQEMNEHMP 213 (438)
Q Consensus 200 ~~~~~~~~i~~~m~ 213 (438)
..++|++.+-+.+.
T Consensus 43 ~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 43 SMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHc
Confidence 57888888877654
No 65
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=45.06 E-value=51 Score=27.39 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=38.8
Q ss_pred cceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechh
Q 013690 286 VKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 355 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~ 355 (438)
+....+.||+.+-.--.+ .+...+|++|++.+.. . | + ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~----~-g-~--------------~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL----E-G-E--------------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe----c-C-C--------------ceEecCCCEEEEC
Confidence 445678888888776666 6789999999999998 3 3 2 3578899998755
No 66
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=40.81 E-value=71 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=23.5
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEe
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
+.....+|+..-.+-...+.+..++.|++.+..
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~ 64 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATVSA 64 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEEee
Confidence 334567888876555555567778899999887
No 67
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.56 E-value=1.7e+02 Score=32.25 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=34.9
Q ss_pred hhccHHHHHHHHHHHHHHHhc-----cccccccCcHHHHHHHHhhcce
Q 013690 246 SILPKELRRNIKRELCLDLLK-----NVKEFKTLDEEVLDALCDCVKP 288 (438)
Q Consensus 246 ~~Lp~~Lr~ei~~~~~~~~l~-----~i~~F~~~s~~~l~~l~~~l~~ 288 (438)
++||+.||+++..+...++.. .-.+++++|++..++|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 469999999999988777655 3468899999999998887743
No 68
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=40.16 E-value=81 Score=28.25 Aligned_cols=52 Identities=8% Similarity=0.161 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHH
Q 013690 134 DFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIG 185 (438)
Q Consensus 134 ~~~~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig 185 (438)
++.-.|..-+|+|++.-||-+-.|+.+.+..=+-....=.+++.++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444688899999999999999999987777777777766666666655553
No 69
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=39.92 E-value=46 Score=29.70 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcce
Q 013690 302 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKN 381 (438)
Q Consensus 302 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~ 381 (438)
+..++++++++|.+.+... ++++.. ...+++|+.|=-- .... .+-++..+
T Consensus 52 ~~tdE~FyqleG~~~l~v~----d~g~~~------------~v~L~eGd~fllP--------~gvp------HsP~r~~~ 101 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQ----EDGKRR------------DVPIREGEMFLLP--------PHVP------HSPQREAG 101 (177)
T ss_pred CCCceEEEEECCeEEEEEE----cCCcee------------eEEECCCCEEEeC--------CCCC------cCCccCCC
Confidence 4568999999999999883 333212 4688999987532 1111 13344677
Q ss_pred EEEEEecHHHHHH
Q 013690 382 VEAFGLMAHDLKH 394 (438)
Q Consensus 382 ~~l~~L~~~~f~~ 394 (438)
|..+.+.+..-..
T Consensus 102 tv~LviE~~r~~~ 114 (177)
T PRK13264 102 SIGLVIERKRPEG 114 (177)
T ss_pred eEEEEEEeCCCCC
Confidence 8888887665443
No 70
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=39.50 E-value=31 Score=24.56 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.5
Q ss_pred HHHHhhccHHHHHHHHHHH
Q 013690 242 ESSLSILPKELRRNIKREL 260 (438)
Q Consensus 242 ~~il~~Lp~~Lr~ei~~~~ 260 (438)
-++++.||..|+.++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4688999999999998765
No 71
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=38.86 E-value=38 Score=21.35 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHhhcccCCCC-----HHHHHHHHHHH
Q 013690 204 RMQEMNEHMPIQKLS-----RSVQQQLKIYQ 229 (438)
Q Consensus 204 ~~~~i~~~m~~~~ip-----~~L~~ri~~y~ 229 (438)
++.++.++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356778888888887 67888888774
No 72
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=36.81 E-value=47 Score=25.23 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=30.4
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhccee
Q 013690 242 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPA 289 (438)
Q Consensus 242 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~ 289 (438)
.++|..||+++|.++...+ .-+...+++.+..+...++.+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 6799999999999988775 346678888888887776654
No 73
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=35.87 E-value=50 Score=21.01 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 013690 413 VKDAARIIQLAWRRRYSSRNL 433 (438)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (438)
..+|+..||.-|| ++.+|++
T Consensus 8 K~YAt~lI~dyfr-~~K~rk~ 27 (35)
T PF08763_consen 8 KFYATLLIQDYFR-QFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 3578999999999 6655443
No 74
>PF15157 IQ-like: IQ-like
Probab=34.89 E-value=28 Score=26.87 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 013690 418 RIIQLAWRRRYS 429 (438)
Q Consensus 418 ~~~~~~~~~~~~ 429 (438)
.+||+||||.-+
T Consensus 51 kiiqrawre~lq 62 (97)
T PF15157_consen 51 KIIQRAWREYLQ 62 (97)
T ss_pred HHHHHHHHHHHH
Confidence 479999994433
No 75
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=33.93 E-value=2.2e+02 Score=22.29 Aligned_cols=60 Identities=8% Similarity=-0.027 Sum_probs=38.8
Q ss_pred HHHHHHHhhcccC-CCCHHHHHHHHHHHHHHHhcCCCCCH--HHHHhhccHHHHHHHHHHHHH
Q 013690 203 LRMQEMNEHMPIQ-KLSRSVQQQLKIYQRYIWRKPDTIDV--ESSLSILPKELRRNIKRELCL 262 (438)
Q Consensus 203 ~~~~~i~~~m~~~-~ip~~L~~ri~~y~~~~~~~~~~~~~--~~il~~Lp~~Lr~ei~~~~~~ 262 (438)
+..+.+.++|... ++++.-..++++.++..-.......+ ..+-..+++..|..+...+..
T Consensus 19 ~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 19 EERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455677777774 99999999999988766544333221 334445567777776666544
No 76
>PHA03029 hypothetical protein; Provisional
Probab=33.14 E-value=1.4e+02 Score=22.39 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 013690 162 NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKE 200 (438)
Q Consensus 162 ~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~ 200 (438)
++.|.+|-++..++=.++.--+||-+...+-+.++-+..
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887777776666666777777766655544333
No 77
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.08 E-value=4.4e+02 Score=29.36 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhcccCCccc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQ 158 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi 158 (438)
.=..+++||+-+++-++--++
T Consensus 553 eS~~tLFWsiFglv~~~~~~l 573 (822)
T KOG3609|consen 553 ESSKTLFWSIFGLVVLGSVVL 573 (822)
T ss_pred HHHHHHHHHHHhcccccceec
Confidence 345699999988776554444
No 78
>PRK06771 hypothetical protein; Provisional
Probab=31.93 E-value=2e+02 Score=22.74 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCCC
Q 013690 177 LVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKL 217 (438)
Q Consensus 177 ~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~i 217 (438)
.+.|-|+...++.+-+..+.+....+.+++.+.+.+---..
T Consensus 11 ~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 11 IFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33455677778888777777788888888888887654444
No 79
>PHA01757 hypothetical protein
Probab=31.83 E-value=2.2e+02 Score=21.74 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 013690 162 NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMN 209 (438)
Q Consensus 162 ~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~ 209 (438)
+..|...--|....|.+.-++++|.+..+..+ .++.+.|..-+++++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHHHHHH
Confidence 45666667777888888889999999888765 344556666666544
No 80
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=29.32 E-value=1.8e+02 Score=19.64 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 013690 168 FVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQE 207 (438)
Q Consensus 168 ~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~ 207 (438)
++.+..+...+....+.+.+.++-.+......++|..-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555566666666666655555555554443
No 81
>PRK11171 hypothetical protein; Provisional
Probab=28.45 E-value=1.3e+02 Score=28.60 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=37.5
Q ss_pred hcceeeeCCCcEEEe-cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 285 CVKPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 285 ~l~~~~~~pge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.+....+.||..+-. ......+.++|++|++.+.. +|. ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-----~~~---------------~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-----NND---------------WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 566678999998876 35666789999999999977 332 35788999755
No 82
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=27.50 E-value=2.3e+02 Score=25.66 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=32.3
Q ss_pred cceeeeCCCcEE---------EecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHI---------VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I---------~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+-...+.||.+. +.+.....++|+|++|+..+...+ .+|.. . ...+.+|+.+=
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~--~~G~~-~------------~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQD--PEGEA-R------------WIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEec--CCCcE-E------------EEEECCCCEEE
Confidence 344556777753 222223358999999999988732 33321 1 35677888754
No 83
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=26.69 E-value=88 Score=31.62 Aligned_cols=86 Identities=7% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcccCCccc--ccCChhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcCCcHHHHHH
Q 013690 137 QKFLHCFRWGLRNLSCFGQNLQ--TSSNAWENFFVILVTISGLVL-----------MLFLIGNIQIYLQTKATRPKEMTL 203 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGyGdi--~p~~~~E~~~~i~~~l~g~~~-----------fayiig~i~~il~~~~~~~~~~~~ 203 (438)
..-..+.+.++++++|.|+... ..-++.=.++.++.|++|+.. ++.++..+...+.+......-+.
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~- 308 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFS- 308 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEe-
Confidence 4456778889999999998744 333445567777888888554 45555555555543222221111
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHH
Q 013690 204 RMQEMNEHMPIQKLSRSVQQQLKIYQ 229 (438)
Q Consensus 204 ~~~~i~~~m~~~~ip~~L~~ri~~y~ 229 (438)
.-...+.++++....+..++
T Consensus 309 ------~~i~~~~v~~~~~~~~~~~~ 328 (390)
T TIGR00933 309 ------RRIGGKTIDKAILISVWSFF 328 (390)
T ss_pred ------EEECCeehHHHHHHHHHHHH
Confidence 11244555666655555554
No 84
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.15 E-value=97 Score=27.02 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=32.8
Q ss_pred eeeCCCcE--EEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechh
Q 013690 289 AFYFKHTH--IVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 355 (438)
Q Consensus 289 ~~~~pge~--I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~ 355 (438)
...+||-- ...-....+++++|++|+..+.. ++++ ..+.+||+.|--
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-----d~~e---------------~~lrpGD~~gFp 95 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-----DGGE---------------TRLRPGDSAGFP 95 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-----CCee---------------EEecCCceeecc
Confidence 44555532 33444567899999999999887 4444 478899998854
No 85
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=25.93 E-value=1e+02 Score=23.91 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=12.4
Q ss_pred eEEEEEecEEEEEe
Q 013690 306 EMLFIVQGKMWIYT 319 (438)
Q Consensus 306 ~lyfI~~G~V~v~~ 319 (438)
-.++|.+|.|++..
T Consensus 35 ~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 35 MVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEEEEESEEEEEE
T ss_pred EEEEEEeCEEEEEE
Confidence 47789999999998
No 86
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.68 E-value=2.4e+02 Score=30.87 Aligned_cols=101 Identities=9% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHh--cCCcHHHHH---HH---------HHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 013690 179 LMLFLIGNIQIYLQT--KATRPKEMT---LR---------MQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESS 244 (438)
Q Consensus 179 ~fayiig~i~~il~~--~~~~~~~~~---~~---------~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~i 244 (438)
+-||++|..+.++.. -.+...+|. +| ---+..|.|.-++.++++.+|.+.|+-... -.| -|+
T Consensus 499 vggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n---~~D-~El 574 (938)
T KOG1077|consen 499 VGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSN---LID-VEL 574 (938)
T ss_pred hhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcc---cCC-HHH
Confidence 458999999999986 334444442 22 234677889999999999999999874432 122 111
Q ss_pred HhhccHHHHHHHH--HHHHHHHhccccccccCcHHHHHHHH
Q 013690 245 LSILPKELRRNIK--RELCLDLLKNVKEFKTLDEEVLDALC 283 (438)
Q Consensus 245 l~~Lp~~Lr~ei~--~~~~~~~l~~i~~F~~~s~~~l~~l~ 283 (438)
-+.--+.|+---. ..+....+...|.|..-+...+.++-
T Consensus 575 QqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~ 615 (938)
T KOG1077|consen 575 QQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLK 615 (938)
T ss_pred HHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhh
Confidence 1111111111111 14455566777888776666665543
No 87
>PHA02909 hypothetical protein; Provisional
Probab=24.45 E-value=1.8e+02 Score=20.53 Aligned_cols=21 Identities=5% Similarity=0.319 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013690 46 FNLLLYVLASHVFGALWYFSA 66 (438)
Q Consensus 46 ~~l~~~~l~~H~~aC~w~~i~ 66 (438)
+..++++-.....||-+.+|+
T Consensus 40 lfviiflsmftilacsyvyia 60 (72)
T PHA02909 40 LFVIIFLSMFTILACSYVYIA 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455688999999988
No 88
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.96 E-value=1.6e+02 Score=29.54 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=35.8
Q ss_pred hcceeeeCCCcEEEec-CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 285 CVKPAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.+....+.||...-.- ....+++++|++|++++...+ .+|+.. ...+++||.+=
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d--~~g~~~-------------~~~l~~GD~~~ 300 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA--AGGNAR-------------TFDYQAGDVGY 300 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe--cCCcEE-------------EEEECCCCEEE
Confidence 3556677888876433 333678999999999998743 333221 35688888653
No 89
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=23.43 E-value=2.2e+02 Score=21.84 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=40.7
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCC
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 365 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~ 365 (438)
.....+.||..+-.....+.+..||++|....-. ..+.+|++.=.- .
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~~------------------------~~~~~G~~~~~p---------~ 72 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSDGD------------------------GRYGAGDWLRLP---------P 72 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEETT------------------------CEEETTEEEEE----------T
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEECC------------------------ccCCCCeEEEeC---------C
Confidence 4456678888887766677788899999876211 245677776543 1
Q ss_pred CCCCCCccceEEEcceEEEEE
Q 013690 366 LSNIPMSTRSVQALKNVEAFG 386 (438)
Q Consensus 366 ~~~~~~r~~tv~A~~~~~l~~ 386 (438)
-+..+..+.+.|.++.
T Consensus 73 -----g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 73 -----GSSHTPRSDEGCLILV 88 (91)
T ss_dssp -----TEEEEEEESSCEEEEE
T ss_pred -----CCccccCcCCCEEEEE
Confidence 2344777888898875
No 90
>COG4325 Predicted membrane protein [Function unknown]
Probab=23.03 E-value=3.6e+02 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHHHHhhcccC-----CcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 132 VPDFPQKFLHCFRWGLRNLSCFG-----QNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 132 ~~~~~~~Yi~slYwa~~tmtTvG-----yGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
+.-....++..|-|+++.++||| ||-..| ..-...+++..+++.+.+-|.+..++..++--
T Consensus 126 nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp--~~avtv~lLlaiisig~~iyfl~~l~~siq~~ 191 (464)
T COG4325 126 NQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIP--KVAVTVSLLLAIISIGALIYFLHHLMHSIQID 191 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCcccccee--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999996 344455 34556666777777788888888877666543
No 91
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.90 E-value=1.7e+02 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=34.6
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||...-.--....++.+|++|++.+...+ .+|+. . ...+++||.+=
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d--~~g~~-~------------~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVD--ENGRN-Y------------IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEc--CCCcE-E------------EeEECCCCEEE
Confidence 344567788765332234568999999999999843 33332 1 34688998764
No 92
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.54 E-value=1.6e+02 Score=25.35 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHHHhhcc
Q 013690 170 ILVTISGLVLMLFLIGNIQIYLQTKA-------------TRPKEMTLRMQEMNEHMP 213 (438)
Q Consensus 170 i~~~l~g~~~fayiig~i~~il~~~~-------------~~~~~~~~~~~~i~~~m~ 213 (438)
+++.++|..+||++++-+.+.-...+ -...+|+.+++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 57788999999999976633221111 134568888887775554
No 93
>PRK11171 hypothetical protein; Provisional
Probab=22.02 E-value=1.7e+02 Score=27.94 Aligned_cols=33 Identities=12% Similarity=-0.038 Sum_probs=22.6
Q ss_pred ceeeeCCCcEEEecCC--CCCeEEEEEecEEEEEe
Q 013690 287 KPAFYFKHTHIVLEGD--PIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd--~~~~lyfI~~G~V~v~~ 319 (438)
....+.||...-.... ..+++++|++|++.+..
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~ 98 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL 98 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE
Confidence 3455677765433322 23689999999999987
No 94
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=21.81 E-value=3.7e+02 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc-C-CcHHHHHHHHHHHHhhcccCCCCH
Q 013690 163 AWENFFVILVTISGLVLMLFLIGNI-QIYLQTK-A-TRPKEMTLRMQEMNEHMPIQKLSR 219 (438)
Q Consensus 163 ~~E~~~~i~~~l~g~~~fayiig~i-~~il~~~-~-~~~~~~~~~~~~i~~~m~~~~ip~ 219 (438)
-.+-++++.++.+++...||++|-+ ++.+=.+ + +...++..|-.+.-+-++++.+++
T Consensus 73 GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 73 GLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4677888999999999999999753 3332211 1 223344444444444445555544
No 95
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=21.69 E-value=2.3e+02 Score=23.45 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.5
Q ss_pred CCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 292 FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 292 ~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.||..=..-++ ++..-|++|.+.+.. .+| + ...+++||.|=
T Consensus 53 TpG~~r~~y~~--~E~chil~G~v~~T~----d~G-e--------------~v~~~aGD~~~ 93 (116)
T COG3450 53 TPGKFRVTYDE--DEFCHILEGRVEVTP----DGG-E--------------PVEVRAGDSFV 93 (116)
T ss_pred cCccceEEccc--ceEEEEEeeEEEEEC----CCC-e--------------EEEEcCCCEEE
Confidence 34444333333 678889999999988 444 4 35788998764
No 96
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.14 E-value=32 Score=24.51 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhcccCC
Q 013690 138 KFLHCFRWGLRNLSCFGQ 155 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGy 155 (438)
||+.++.|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688899999876666666
No 97
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.96 E-value=1.3e+03 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.494 Sum_probs=16.1
Q ss_pred ChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013690 162 NAWENFFVI-LVTISGLVLMLFLIGNIQIYLQ 192 (438)
Q Consensus 162 ~~~E~~~~i-~~~l~g~~~fayiig~i~~il~ 192 (438)
|.+-.++.| +..++..++.-.++|.+.+-+.
T Consensus 1358 npwmllYfIsfllIvsffVlnmfVgvvvenfh 1389 (1956)
T KOG2302|consen 1358 NPWMLLYFISFLLIVSFFVLNMFVGVVVENFH 1389 (1956)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 3444555555666666665553
No 98
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=20.43 E-value=92 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC
Q 013690 215 QKLSRSVQQQLKIYQRYIWRKP 236 (438)
Q Consensus 215 ~~ip~~L~~ri~~y~~~~~~~~ 236 (438)
+++|++++..|..|.+|...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999988764
No 99
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=3.6e+02 Score=21.43 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=35.9
Q ss_pred hhhHHhhHHHHHHHHHhhhhHhhhhcC----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013690 5 KILSGMMLLKYSVLIQFVLRMIRIYPW----TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIER 69 (438)
Q Consensus 5 ~~~~~~~~l~~~~~~~~l~rl~r~~~l----~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~ 69 (438)
..-.+.++|-+..++-.+| +.-.+-+ ..++++-+.-=..+..-+.-+.+.|..--+|.+.++..
T Consensus 24 ~~s~vktlLfy~~lii~vP-iatfF~lK~fvleg~lgis~~da~iySaI~aVVavHvalglyiy~A~~~ 91 (102)
T KOG4783|consen 24 SVSIVKTLLFYCSLIIGVP-IATFFALKFFVLEGYLGISEVDADIYSAICAVVAVHVALGLYIYRAIYA 91 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456677777777777766 3222222 33333322111122233334567899999999999544
No 100
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=20.02 E-value=8.8e+02 Score=24.21 Aligned_cols=73 Identities=5% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhcccCC---------cccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 013690 137 QKFLHCFRWGLRNLSCFGQ---------NLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQE 207 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGy---------Gdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~ 207 (438)
...+.|..|-+++|+|..| |+.+ ++..=+.+..++++.++..-..-+..-.-+-..++.+-+.|++++++
T Consensus 116 kafi~s~pw~v~~~s~aiy~~~~~ki~~~g~~-~~~~~~~~~~~i~~l~~~is~i~L~~y~lv~~al~REi~yFN~ELe~ 194 (353)
T PF03268_consen 116 KAFIFSIPWFVAFMSTAIYNAVHGKIIYGGAE-TSSWYYILDPFINFLCWYISFICLAIYFLVNSALNREIEYFNEELEK 194 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhceEEeCCCC-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777543 3332 34455555555555555443333333333333444444556666665
Q ss_pred HHh
Q 013690 208 MNE 210 (438)
Q Consensus 208 i~~ 210 (438)
.++
T Consensus 195 A~k 197 (353)
T PF03268_consen 195 ASK 197 (353)
T ss_pred HHH
Confidence 554
Done!