Query 013690
Match_columns 438
No_of_seqs 338 out of 2503
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 100.0 3.7E-32 1.3E-36 247.6 21.4 186 193-406 2-188 (198)
2 3bpz_A Potassium/sodium hyperp 100.0 1.2E-31 4E-36 245.1 21.5 186 192-406 2-188 (202)
3 3ukn_A Novel protein similar t 100.0 1.2E-32 4.1E-37 253.6 14.8 192 188-406 1-193 (212)
4 3beh_A MLL3241 protein; transm 100.0 3.7E-31 1.3E-35 263.0 10.1 182 137-406 160-342 (355)
5 4f8a_A Potassium voltage-gated 99.8 2.4E-19 8.3E-24 156.2 14.9 140 241-406 5-145 (160)
6 3ocp_A PRKG1 protein; serine/t 99.7 4.7E-18 1.6E-22 144.8 11.3 130 247-404 7-137 (139)
7 3idb_B CAMP-dependent protein 99.7 5.5E-17 1.9E-21 141.8 11.6 125 256-404 31-156 (161)
8 3gyd_A CNMP-BD protein, cyclic 99.7 2.7E-16 9.4E-21 141.3 16.3 142 241-405 13-159 (187)
9 4h33_A LMO2059 protein; bilaye 99.7 3.2E-17 1.1E-21 139.7 9.4 93 138-230 43-135 (137)
10 1wgp_A Probable cyclic nucleot 99.7 6.3E-17 2.2E-21 137.2 11.3 126 263-403 6-134 (137)
11 2pqq_A Putative transcriptiona 99.7 2.3E-16 8E-21 135.2 12.2 122 262-406 4-126 (149)
12 2z69_A DNR protein; beta barre 99.7 5.7E-16 2E-20 133.6 14.7 122 262-405 11-133 (154)
13 3pna_A CAMP-dependent protein 99.7 8.9E-16 3E-20 133.2 14.0 116 260-403 35-151 (154)
14 3mdp_A Cyclic nucleotide-bindi 99.7 8E-16 2.7E-20 130.8 13.4 124 262-405 5-129 (142)
15 4ev0_A Transcription regulator 99.7 1.9E-15 6.4E-20 138.2 16.5 119 265-406 1-120 (216)
16 3dn7_A Cyclic nucleotide bindi 99.7 1.1E-15 3.6E-20 137.6 13.8 122 262-406 6-129 (194)
17 3vou_A ION transport 2 domain 99.6 1.5E-15 5.2E-20 131.3 13.1 87 138-224 52-148 (148)
18 1vp6_A CNBD, cyclic-nucleotide 99.6 3.6E-15 1.2E-19 126.4 14.3 115 262-406 10-125 (138)
19 3fx3_A Cyclic nucleotide-bindi 99.6 3E-15 1E-19 139.0 14.7 123 260-405 8-131 (237)
20 3shr_A CGMP-dependent protein 99.6 1.1E-15 3.8E-20 147.3 11.8 129 242-398 18-146 (299)
21 3d0s_A Transcriptional regulat 99.6 2.1E-15 7.1E-20 139.2 12.3 122 262-406 5-127 (227)
22 1zyb_A Transcription regulator 99.6 7.8E-15 2.7E-19 136.1 14.2 123 262-406 17-142 (232)
23 4ava_A Lysine acetyltransferas 99.6 8.4E-15 2.9E-19 143.3 14.7 120 262-405 12-131 (333)
24 3e97_A Transcriptional regulat 99.6 6.9E-15 2.3E-19 136.1 13.3 121 262-405 5-126 (231)
25 3dv8_A Transcriptional regulat 99.6 1.3E-14 4.5E-19 132.9 14.7 121 263-406 3-126 (220)
26 2gau_A Transcriptional regulat 99.6 1.1E-14 3.8E-19 134.8 14.2 118 266-406 13-131 (232)
27 2d93_A RAP guanine nucleotide 99.6 1.2E-15 4.2E-20 129.0 6.9 120 251-398 4-125 (134)
28 2a9h_A Voltage-gated potassium 99.6 7.8E-15 2.7E-19 127.2 11.6 63 138-200 84-146 (155)
29 3dkw_A DNR protein; CRP-FNR, H 99.6 7.6E-15 2.6E-19 135.2 12.2 122 262-405 8-130 (227)
30 3of1_A CAMP-dependent protein 99.6 4.4E-14 1.5E-18 131.4 16.5 113 261-401 5-118 (246)
31 3of1_A CAMP-dependent protein 99.6 2.6E-14 8.8E-19 133.0 14.9 116 261-403 123-239 (246)
32 1orq_C Potassium channel; volt 99.6 1.7E-14 6E-19 133.3 12.1 56 138-193 165-220 (223)
33 3shr_A CGMP-dependent protein 99.6 1.9E-14 6.4E-19 138.6 12.7 125 259-405 153-278 (299)
34 3iwz_A CAP-like, catabolite ac 99.5 5.8E-14 2E-18 129.5 14.7 115 262-398 10-124 (230)
35 2ih3_C Voltage-gated potassium 99.5 1.8E-14 6.2E-19 120.1 9.7 58 138-195 61-118 (122)
36 2qcs_B CAMP-dependent protein 99.5 8.9E-14 3E-18 133.1 15.0 120 260-402 154-275 (291)
37 3tnp_B CAMP-dependent protein 99.5 5E-14 1.7E-18 142.4 13.5 122 257-402 139-261 (416)
38 3ryp_A Catabolite gene activat 99.5 8.4E-14 2.9E-18 126.5 13.5 115 269-405 2-117 (210)
39 2qcs_B CAMP-dependent protein 99.5 8.9E-14 3E-18 133.1 13.8 116 259-402 35-151 (291)
40 1o7f_A CAMP-dependent RAP1 gua 99.5 6.1E-14 2.1E-18 143.7 12.8 135 248-406 27-164 (469)
41 3eff_K Voltage-gated potassium 99.5 3.1E-14 1.1E-18 121.7 8.0 57 138-194 40-96 (139)
42 2fmy_A COOA, carbon monoxide o 99.5 5.6E-14 1.9E-18 128.9 9.9 113 263-406 4-117 (220)
43 2oz6_A Virulence factor regula 99.5 4.2E-13 1.4E-17 121.6 14.6 113 274-405 1-114 (207)
44 3tnp_B CAMP-dependent protein 99.5 1.4E-13 4.7E-18 139.1 12.3 118 262-402 266-390 (416)
45 4din_B CAMP-dependent protein 99.5 9.2E-14 3.1E-18 138.9 10.7 121 259-402 244-366 (381)
46 4din_B CAMP-dependent protein 99.5 1E-13 3.5E-18 138.5 10.1 116 259-402 126-242 (381)
47 1ft9_A Carbon monoxide oxidati 99.5 7.5E-14 2.6E-18 128.4 8.5 112 264-406 1-113 (222)
48 1o5l_A Transcriptional regulat 99.5 2.5E-13 8.6E-18 124.2 11.0 115 268-404 4-119 (213)
49 3kcc_A Catabolite gene activat 99.5 4.9E-13 1.7E-17 126.3 13.3 112 272-405 55-167 (260)
50 4f7z_A RAP guanine nucleotide 99.4 2.8E-13 9.7E-18 151.3 13.2 136 244-402 24-160 (999)
51 2q67_A Potassium channel prote 99.4 2E-12 6.8E-17 106.3 13.2 59 138-196 49-107 (114)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 5.4E-13 1.9E-17 136.6 11.6 120 260-406 334-456 (469)
53 2r9r_B Paddle chimera voltage 99.4 1.3E-12 4.3E-17 135.1 11.3 115 137-260 374-488 (514)
54 3e6c_C CPRK, cyclic nucleotide 99.4 1.3E-12 4.4E-17 122.4 9.9 115 265-405 11-126 (250)
55 3ouf_A Potassium channel prote 99.4 4E-12 1.4E-16 101.3 10.5 56 138-193 32-87 (97)
56 3la7_A Global nitrogen regulat 99.4 4.3E-12 1.5E-16 118.4 12.3 109 276-405 30-142 (243)
57 2k1e_A Water soluble analogue 99.3 3.7E-13 1.3E-17 108.7 3.9 57 138-194 40-96 (103)
58 3cf6_E RAP guanine nucleotide 99.3 2.6E-12 9.1E-17 137.4 11.5 133 242-402 12-147 (694)
59 3ldc_A Calcium-gated potassium 99.3 1.8E-11 6.1E-16 94.4 10.8 54 138-191 28-81 (82)
60 4f7z_A RAP guanine nucleotide 99.3 1.1E-11 3.9E-16 138.4 13.6 113 259-398 333-447 (999)
61 2bgc_A PRFA; bacterial infecti 99.3 6E-11 2E-15 110.2 14.0 111 273-406 3-118 (238)
62 3pjs_K KCSA, voltage-gated pot 99.1 1E-12 3.5E-17 115.6 -3.6 58 138-195 67-124 (166)
63 3b02_A Transcriptional regulat 99.1 1.9E-10 6.5E-15 103.3 10.0 81 289-393 2-82 (195)
64 1xl4_A Inward rectifier potass 99.1 2.5E-10 8.7E-15 109.5 10.8 57 138-194 82-138 (301)
65 1p7b_A Integral membrane chann 99.0 4.4E-10 1.5E-14 109.0 9.3 59 138-196 96-154 (333)
66 3um7_A Potassium channel subfa 99.0 9.4E-10 3.2E-14 105.2 9.3 56 138-193 115-170 (309)
67 2zcw_A TTHA1359, transcription 99.0 6.5E-10 2.2E-14 100.3 6.8 87 282-393 1-89 (202)
68 2qks_A KIR3.1-prokaryotic KIR 98.9 5E-09 1.7E-13 101.3 11.7 59 138-196 78-136 (321)
69 4gx0_A TRKA domain protein; me 98.8 1.6E-08 5.5E-13 105.9 12.1 53 139-191 52-105 (565)
70 3um7_A Potassium channel subfa 98.8 9.7E-09 3.3E-13 98.2 9.0 62 138-199 224-291 (309)
71 3sya_A G protein-activated inw 98.8 4.4E-08 1.5E-12 94.8 11.6 58 138-195 91-150 (340)
72 3ukm_A Potassium channel subfa 98.7 1.5E-08 5.3E-13 95.4 7.8 56 138-193 93-148 (280)
73 3ukm_A Potassium channel subfa 98.6 3.4E-08 1.2E-12 93.1 6.2 56 138-193 201-263 (280)
74 3spc_A Inward-rectifier K+ cha 98.6 2.1E-07 7.4E-12 90.1 11.2 59 138-196 94-154 (343)
75 1lnq_A MTHK channels, potassiu 98.5 7E-09 2.4E-13 101.5 -1.8 57 139-195 46-102 (336)
76 3rvy_A ION transport protein; 98.1 4.1E-06 1.4E-10 79.7 7.0 60 137-196 179-244 (285)
77 2kxw_B Sodium channel protein 94.2 0.027 9.1E-07 32.8 2.2 19 413-432 5-23 (27)
78 4dxw_A Navrh, ION transport pr 94.2 0.28 9.5E-06 44.3 10.4 56 138-193 165-225 (229)
79 2l53_B CAM, voltage-gated sodi 94.1 0.036 1.2E-06 33.3 2.7 20 412-432 4-23 (31)
80 3fjs_A Uncharacterized protein 70.8 19 0.00065 28.0 8.1 67 286-386 38-104 (114)
81 3rns_A Cupin 2 conserved barre 69.8 19 0.00064 32.0 8.8 69 285-387 38-106 (227)
82 4dck_A Sodium channel protein 67.6 3.2 0.00011 35.5 2.8 19 412-431 128-146 (168)
83 1yhf_A Hypothetical protein SP 62.4 38 0.0013 25.8 8.4 68 286-387 42-109 (115)
84 2ozj_A Cupin 2, conserved barr 62.1 26 0.00087 26.9 7.2 63 291-387 45-107 (114)
85 3kg2_A Glutamate receptor 2; I 60.2 9.8 0.00033 40.6 5.8 55 138-193 563-617 (823)
86 3lwc_A Uncharacterized protein 60.0 19 0.00064 28.5 6.1 46 288-354 44-89 (119)
87 1o5u_A Novel thermotoga mariti 59.7 33 0.0011 26.2 7.3 47 286-353 33-79 (101)
88 3ibm_A Cupin 2, conserved barr 57.8 38 0.0013 28.4 8.0 89 287-409 59-161 (167)
89 3d0j_A Uncharacterized protein 57.5 15 0.0005 30.3 5.0 67 298-390 44-110 (140)
90 1dgw_A Canavalin; duplicated s 55.7 11 0.00038 32.2 4.3 52 286-353 43-94 (178)
91 3h8u_A Uncharacterized conserv 55.2 19 0.00064 28.2 5.4 49 286-353 41-90 (125)
92 1v70_A Probable antibiotics sy 53.9 27 0.00091 25.8 5.9 48 286-353 30-78 (105)
93 2pfw_A Cupin 2, conserved barr 53.2 25 0.00085 26.9 5.7 68 286-387 36-103 (116)
94 2gu9_A Tetracenomycin polyketi 53.2 22 0.00076 26.8 5.4 48 286-353 23-73 (113)
95 4e2g_A Cupin 2 conserved barre 52.5 23 0.00079 27.6 5.5 48 286-353 43-90 (126)
96 3lag_A Uncharacterized protein 48.8 7.2 0.00025 29.8 1.7 35 285-319 18-53 (98)
97 4b29_A Dimethylsulfoniopropion 47.9 31 0.001 30.6 5.8 33 302-353 150-182 (217)
98 2bnm_A Epoxidase; oxidoreducta 45.8 22 0.00074 30.5 4.6 49 289-353 122-173 (198)
99 3bcw_A Uncharacterized protein 45.7 18 0.00062 28.9 3.8 44 291-354 56-99 (123)
100 2fqp_A Hypothetical protein BP 44.8 13 0.00045 27.9 2.7 50 287-354 21-71 (97)
101 1yfu_A 3-hydroxyanthranilate-3 44.2 21 0.00071 30.5 4.0 61 303-393 54-115 (174)
102 3es4_A Uncharacterized protein 43.5 27 0.00093 27.7 4.4 44 291-354 49-92 (116)
103 2opk_A Hypothetical protein; p 40.5 29 0.00099 26.9 4.2 35 302-354 51-85 (112)
104 2b8m_A Hypothetical protein MJ 40.3 35 0.0012 26.2 4.7 31 289-319 32-62 (117)
105 3dvk_B Voltage-dependent R-typ 39.9 22 0.00077 19.5 2.3 17 414-431 6-22 (23)
106 3es1_A Cupin 2, conserved barr 38.8 27 0.00091 29.8 3.9 48 286-352 81-128 (172)
107 3rns_A Cupin 2 conserved barre 38.3 46 0.0016 29.4 5.7 68 285-386 154-222 (227)
108 1zvf_A 3-hydroxyanthranilate 3 38.0 22 0.00074 30.4 3.1 87 278-393 13-117 (176)
109 1o4t_A Putative oxalate decarb 37.4 42 0.0014 26.7 4.8 47 287-353 60-107 (133)
110 2f4p_A Hypothetical protein TM 37.2 58 0.002 26.4 5.8 48 287-353 51-98 (147)
111 2i45_A Hypothetical protein; n 36.5 28 0.00097 26.3 3.5 69 291-392 35-103 (107)
112 1vj2_A Novel manganese-contain 36.2 48 0.0016 26.0 5.0 32 288-319 52-83 (126)
113 2pyt_A Ethanolamine utilizatio 35.9 35 0.0012 27.5 4.1 44 289-354 62-105 (133)
114 4i4a_A Similar to unknown prot 35.4 49 0.0017 25.7 4.9 46 288-353 38-83 (128)
115 1y9q_A Transcriptional regulat 34.8 62 0.0021 27.4 5.8 46 288-353 108-155 (192)
116 3i7d_A Sugar phosphate isomera 34.2 35 0.0012 28.4 4.0 47 287-353 46-94 (163)
117 3jzv_A Uncharacterized protein 34.1 32 0.0011 28.9 3.7 45 289-353 58-102 (166)
118 3kgz_A Cupin 2 conserved barre 33.9 34 0.0012 28.4 3.8 45 289-353 49-93 (156)
119 2kwv_A RAD30 homolog B, DNA po 33.9 13 0.00046 24.1 0.9 18 242-259 18-35 (48)
120 3l2h_A Putative sugar phosphat 33.7 32 0.0011 28.4 3.6 46 287-352 49-96 (162)
121 1sfn_A Conserved hypothetical 33.7 45 0.0016 29.9 4.9 50 285-354 166-216 (246)
122 3c3v_A Arachin ARAH3 isoform; 32.7 59 0.002 32.8 5.9 61 279-353 367-428 (510)
123 2d5f_A Glycinin A3B4 subunit; 32.4 65 0.0022 32.3 6.2 61 279-353 362-423 (493)
124 3h7j_A Bacilysin biosynthesis 31.6 68 0.0023 28.5 5.7 35 285-319 35-69 (243)
125 2q30_A Uncharacterized protein 31.5 86 0.003 23.2 5.6 48 287-353 36-85 (110)
126 1fxz_A Glycinin G1; proglycini 31.5 62 0.0021 32.3 5.8 57 283-353 337-394 (476)
127 2vpv_A Protein MIF2, MIF2P; nu 31.0 37 0.0013 28.7 3.5 33 302-354 108-140 (166)
128 3d82_A Cupin 2, conserved barr 30.9 1.2E+02 0.0042 22.0 6.4 50 305-388 51-100 (102)
129 2cav_A Protein (canavalin); vi 30.9 40 0.0014 33.4 4.3 36 285-320 87-122 (445)
130 1uij_A Beta subunit of beta co 30.3 42 0.0014 32.9 4.3 36 285-320 50-85 (416)
131 3bu7_A Gentisate 1,2-dioxygena 29.6 29 0.00099 33.8 2.9 48 287-353 126-173 (394)
132 2ea7_A 7S globulin-1; beta bar 29.4 46 0.0016 32.8 4.4 37 284-320 61-97 (434)
133 1fi2_A Oxalate oxidase, germin 29.3 96 0.0033 26.6 6.1 54 286-353 74-130 (201)
134 1sq4_A GLXB, glyoxylate-induce 29.1 64 0.0022 29.5 5.2 50 284-353 191-241 (278)
135 2vqa_A SLL1358 protein, MNCA; 29.0 80 0.0027 29.8 6.0 52 287-353 55-107 (361)
136 3cew_A Uncharacterized cupin p 28.7 51 0.0017 25.6 3.9 47 287-353 29-77 (125)
137 1sfn_A Conserved hypothetical 28.4 84 0.0029 28.0 5.7 44 288-353 54-97 (246)
138 3fz3_A Prunin; TREE NUT allerg 27.6 91 0.0031 31.5 6.2 62 278-353 388-450 (531)
139 4axo_A EUTQ, ethanolamine util 27.1 54 0.0019 27.2 3.8 31 303-353 83-113 (151)
140 3bu7_A Gentisate 1,2-dioxygena 26.5 46 0.0016 32.4 3.8 76 287-396 297-375 (394)
141 4e2q_A Ureidoglycine aminohydr 26.4 58 0.002 29.8 4.2 68 288-388 74-141 (266)
142 1lr5_A Auxin binding protein 1 26.1 60 0.0021 26.7 4.1 33 287-319 44-76 (163)
143 2oa2_A BH2720 protein; 1017534 26.1 96 0.0033 24.9 5.3 32 288-319 47-79 (148)
144 1j58_A YVRK protein; cupin, de 25.8 95 0.0033 29.6 6.0 53 286-353 259-312 (385)
145 1sef_A Conserved hypothetical 25.4 75 0.0026 28.9 4.9 48 286-353 184-232 (274)
146 1j58_A YVRK protein; cupin, de 25.2 88 0.003 29.9 5.6 53 286-353 81-133 (385)
147 1n2d_C IQ2 and IQ3 motifs from 24.9 48 0.0016 21.2 2.5 18 414-432 28-45 (48)
148 2vqa_A SLL1358 protein, MNCA; 24.8 1.2E+02 0.004 28.6 6.4 53 286-353 236-289 (361)
149 3bxl_B CAM, voltage-dependent 24.4 68 0.0023 18.0 2.5 21 414-434 2-22 (26)
150 2qnk_A 3-hydroxyanthranilate 3 24.4 50 0.0017 30.4 3.3 63 301-393 48-110 (286)
151 3h7j_A Bacilysin biosynthesis 24.0 83 0.0028 27.9 4.8 48 288-355 149-197 (243)
152 1y3t_A Hypothetical protein YX 23.1 1.1E+02 0.0038 28.3 5.7 47 287-353 49-96 (337)
153 3dve_B Voltage-dependent N-typ 23.0 30 0.001 19.0 0.9 17 414-431 5-21 (23)
154 3s7i_A Allergen ARA H 1, clone 22.5 76 0.0026 31.1 4.5 51 286-352 46-96 (418)
155 2e9q_A 11S globulin subunit be 22.4 1.3E+02 0.0044 29.9 6.2 61 279-353 317-378 (459)
156 2be6_D Voltage-dependent L-typ 22.3 79 0.0027 19.3 2.8 20 413-433 10-29 (37)
157 2xp1_A SPT6; transcription, IW 22.3 1.4E+02 0.0048 25.4 5.6 38 266-309 12-49 (178)
158 3nw4_A Gentisate 1,2-dioxygena 21.8 61 0.0021 31.2 3.5 48 286-352 105-152 (368)
159 1rc6_A Hypothetical protein YL 21.5 90 0.0031 28.0 4.6 48 286-353 181-229 (261)
160 3g43_E Voltage-dependent L-typ 21.4 50 0.0017 24.3 2.2 19 413-432 62-80 (81)
161 2lh0_A Histone chaperone RTT10 21.3 43 0.0015 23.9 1.8 16 244-259 8-23 (70)
162 1sq4_A GLXB, glyoxylate-induce 20.8 73 0.0025 29.1 3.8 46 288-353 72-119 (278)
163 2phl_A Phaseolin; plant SEED s 20.6 84 0.0029 30.5 4.3 51 285-351 53-103 (397)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=3.7e-32 Score=247.59 Aligned_cols=186 Identities=19% Similarity=0.315 Sum_probs=171.6
Q ss_pred hcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccc
Q 013690 193 TKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFK 272 (438)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~ 272 (438)
+++++..+|+++++.+++||+.+++|++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 5678899999999999999999999999999999999999974 788999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 273 TLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 273 ~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
+++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. .+|. . +..+++|++|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~----~~g~--~------------~~~l~~G~~f 142 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM----SDGV--I------------ATSLSDGSYF 142 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC----TTSC--E------------EEEECTTCEE
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe----cCCe--E------------EEEecCCCEe
Confidence 99999999999999999999999999999999999999999999998 5665 3 7899999999
Q ss_pred chhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 353 GEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 353 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
|+.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 143 Ge~~~~~~---------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (198)
T 2ptm_A 143 GEICLLTR---------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTME 188 (198)
T ss_dssp SCHHHHHS---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHcCC---------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 99988742 15788999999999999999999999999 88876554
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=1.2e-31 Score=245.12 Aligned_cols=186 Identities=21% Similarity=0.284 Sum_probs=169.3
Q ss_pred HhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhcccccc
Q 013690 192 QTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEF 271 (438)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F 271 (438)
++++++..+|+++++.+++||+.++||++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788899999999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCe
Q 013690 272 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 351 (438)
Q Consensus 272 ~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~ 351 (438)
.+++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. .+|.+ ..+++|++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~----~~g~~---------------~~l~~G~~ 141 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT----KGNKE---------------MKLSDGSY 141 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC----TTSCC---------------EEEETTCE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE----CCCeE---------------EEEcCCCE
Confidence 999999999999999999999999999999999999999999999987 45532 46899999
Q ss_pred echhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 352 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 352 FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
||+.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 142 fGe~~~~~~---------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (202)
T 3bpz_A 142 FGEICLLTR---------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 188 (202)
T ss_dssp ECHHHHHHC---------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred eccHHHhcC---------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 999988742 15778999999999999999999999999 88776554
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=1.2e-32 Score=253.56 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=165.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhcc
Q 013690 188 QIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKN 267 (438)
Q Consensus 188 ~~il~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~ 267 (438)
|+|+++++++..+|+++|+.+++||+.++||++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578899999999999999999999999999999999999999999998888999999999999999999999998877 7
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceecc
Q 013690 268 VKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLA 347 (438)
Q Consensus 268 i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 347 (438)
+|+|++++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. +| .. +..++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~--~~------------~~~l~ 140 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-----DN--TV------------LAILG 140 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-----SS--CE------------EEEEC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-----CC--eE------------EEEec
Confidence 9999999999999999999999999999999999999999999999999998 33 22 78999
Q ss_pred CCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 348 DGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 348 ~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+|++|||.+++.+. .++++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 141 ~G~~fGe~~~~~~~-------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 193 (212)
T 3ukn_A 141 KGDLIGSDSLTKEQ-------VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFV 193 (212)
T ss_dssp TTCEEECSCCSSSS-------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCcCcHHhccCC-------CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 99999999775211 015888999999999999999999999999 77775543
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=3.7e-31 Score=262.97 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCC
Q 013690 137 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQK 216 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~ 216 (438)
..|..|+||+++|||||||||++|.|..++++++++|++|.+++++.+|.+++.+.+.. ++
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~------~~------------- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV------RR------------- 220 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------------
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------------
Confidence 36889999999999999999999999999999999999999999999999988775311 00
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcE
Q 013690 217 LSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTH 296 (438)
Q Consensus 217 ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~ 296 (438)
+++. ...+.++++|+|++++++.+++++..++++.|+|||.
T Consensus 221 ---------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~ 261 (355)
T 3beh_A 221 ---------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261 (355)
T ss_dssp ---------HHHH------------------------------HHHC---------------------------------
T ss_pred ---------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCE
Confidence 0010 0246788899999999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceE
Q 013690 297 IVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSV 376 (438)
Q Consensus 297 I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv 376 (438)
|+++||+++++|||.+|.|+++. .+ + ..+++|++|||.+++.+ .++++++
T Consensus 262 I~~~G~~~~~ly~I~~G~v~v~~----~~--~---------------~~l~~G~~fGe~~~l~~---------~~~~~~~ 311 (355)
T 3beh_A 262 ICRIGEPGDRMFFVVEGSVSVAT----PN--P---------------VELGPGAFFGEMALISG---------EPRSATV 311 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCcCceEEEEEeeEEEEEE----CC--e---------------eEECCCCEEeehHHhCC---------CCcceEE
Confidence 99999999999999999999998 22 1 36889999999988632 1577899
Q ss_pred EEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 377 QALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 377 ~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+|.++|+++.|++++|.+++++ |++.+.+.
T Consensus 312 ~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~ 342 (355)
T 3beh_A 312 SAATTVSLLSLHSADFQMLCSSSPEIAEIFR 342 (355)
T ss_dssp -------------------------------
T ss_pred EECccEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 9999999999999999999999 88876665
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=2.4e-19 Score=156.20 Aligned_cols=140 Identities=21% Similarity=0.285 Sum_probs=116.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEee
Q 013690 241 VESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 320 (438)
Q Consensus 241 ~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~ 320 (438)
.+++++.||++||.++..+++.+.++++|+|++++++.+..++..++.+.|.||++|+++||+++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-h
Q 013690 321 KERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-H 399 (438)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p 399 (438)
++ .. +..+++|++||+.+++.+. ..++.++++|.++|+++.|++++|.+++++ |
T Consensus 84 ----~~--~~------------~~~~~~G~~fG~~~~~~~~-------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 84 ----DD--EV------------VAILGKGDVFGDVFWKEAT-------LAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp ----TT--EE------------EEEEETTCEEECCTTTCSS-------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred ----CC--EE------------EEEecCCCEeCcHHHhcCc-------ccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 22 22 7899999999999775310 025778999999999999999999999999 8
Q ss_pred hHHhHhh
Q 013690 400 QVASSTE 406 (438)
Q Consensus 400 ~l~~~~r 406 (438)
.+...+.
T Consensus 139 ~~~~~~~ 145 (160)
T 4f8a_A 139 AFSHSFS 145 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 6
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.75 E-value=4.7e-18 Score=144.84 Aligned_cols=130 Identities=19% Similarity=0.310 Sum_probs=112.9
Q ss_pred hccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCC
Q 013690 247 ILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNG 326 (438)
Q Consensus 247 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g 326 (438)
.+|..+|.+...+.....++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-----~g 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-----EG 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-----TT
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-----CC
Confidence 5788888888888889999999999999999999999999999999999999999999999999999999966 44
Q ss_pred CcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 327 SANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
. . +..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++++ |.+++.
T Consensus 82 ~--~------------~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 82 V--K------------LCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--E------------EEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--E------------EEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 2 789999999999988742 15778999999999999999999999999 777654
No 7
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=5.5e-17 Score=141.83 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=109.8
Q ss_pred HHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccC
Q 013690 256 IKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRD 335 (438)
Q Consensus 256 i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~ 335 (438)
-..+...+.++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++. + .+|.+..
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~--~~g~~~~----- 102 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-K--CDGVGRC----- 102 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-E--ETTEEEE-----
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-c--CCCCeEE-----
Confidence 3344556789999999999999999999999999999999999999999999999999999998 3 5676655
Q ss_pred cccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 336 NSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 336 ~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++++ |.+++.
T Consensus 103 -------~~~~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 103 -------VGNYDNRGSFGELALMYN---------TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp -------EEEEESCCEECGGGGTCC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred -------EEEcCCCCEechHHHHcC---------CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 889999999999988631 25778999999999999999999999999 776643
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.70 E-value=2.7e-16 Score=141.28 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=119.0
Q ss_pred HHHHHhhccHHH----HHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEE
Q 013690 241 VESSLSILPKEL----RRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMW 316 (438)
Q Consensus 241 ~~~il~~Lp~~L----r~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~ 316 (438)
+.+..+.++|+| +.+...+...+.++++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344445554443 2344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHh
Q 013690 317 IYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVF 396 (438)
Q Consensus 317 v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll 396 (438)
++..+ .+|++.. +..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++
T Consensus 93 v~~~~--~~g~~~~------------~~~~~~G~~fGe~~~l~~---------~~~~~~v~A~~~~~v~~i~~~~~~~l~ 149 (187)
T 3gyd_A 93 VIKDI--PNKGIQT------------IAKVGAGAIIGEMSMIDG---------MPRSASCVASLPTDFAVLSRDALYQLL 149 (187)
T ss_dssp EEEEE--TTTEEEE------------EEEEETTCEESHHHHHHC---------CCCSSEEEEEEEEEEEEEEHHHHHHHH
T ss_pred EEEEC--CCCCeEE------------EEEccCCCeeeeHHHhCC---------CCeeEEEEECCCeEEEEEcHHHHHHHH
Confidence 99865 6676655 889999999999988632 147789999999999999999999999
Q ss_pred hh-hhHHhHh
Q 013690 397 IE-HQVASST 405 (438)
Q Consensus 397 ~~-p~l~~~~ 405 (438)
++ |.+...+
T Consensus 150 ~~~p~~~~~l 159 (187)
T 3gyd_A 150 ANMPKLGNKV 159 (187)
T ss_dssp HHCHHHHHHH
T ss_pred HHChHHHHHH
Confidence 99 8877554
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.70 E-value=3.2e-17 Score=139.71 Aligned_cols=93 Identities=6% Similarity=0.154 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCCC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKL 217 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~i 217 (438)
.|..|+||+++|||||||||++|.|..+++++++.+++|++++|++++.+++.+.+......+.++.....+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 38889999999999999999999999999999999999999999999999999877665554444333333333445567
Q ss_pred CHHHHHHHHHHHH
Q 013690 218 SRSVQQQLKIYQR 230 (438)
Q Consensus 218 p~~L~~ri~~y~~ 230 (438)
+++.+..+++|++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 7777777777654
No 10
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=6.3e-17 Score=137.21 Aligned_cols=126 Identities=40% Similarity=0.723 Sum_probs=103.2
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccc
Q 013690 263 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 342 (438)
Q Consensus 263 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (438)
++++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|++.. + .+|++..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~--~~g~~~~------------ 70 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT-T--DGGRSGF------------ 70 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEEC-C--SSCSSSS------------
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEE-c--CCCccee------------
Confidence 467899999999999999999999999999999999999999999999999999764 2 4565544
Q ss_pred ce--eccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHh
Q 013690 343 KD--HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 403 (438)
Q Consensus 343 ~~--~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~ 403 (438)
+. .+++|++||+.+++..+...+....++++++++|.++|+++.|++++|.+++++ |.+++
T Consensus 71 ~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp SCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred eeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 55 999999999998622122221111224678999999999999999999999998 77654
No 11
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=2.3e-16 Score=135.20 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=107.9
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+ .+|++..
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 70 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTS--PDGRENM----------- 70 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEEC--TTSSEEE-----------
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEEC--CCCcEEE-----------
Confidence 357889999999999999999999999999999999999999999999999999999854 5666655
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 71 -~~~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 71 -LAVVGPSELIGELSLFDP---------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp -EEEECTTCEESGGGGTSC---------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred -EEEcCCcCEechHHhcCC---------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 789999999999977631 14777999999999999999999999998 87776554
No 12
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.68 E-value=5.7e-16 Score=133.65 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|..++++.+..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 77 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQEKI----------- 77 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCC--C-----C-----------
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEEC--CCCCEEE-----------
Confidence 467899999999999999999999999999999999999999999999999999999844 5666655
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+++|++||+.+++.+ .+++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 78 -~~~~~~G~~~G~~~~~~~--------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l 133 (154)
T 2z69_A 78 -LEVTNERNTFAEAMMFMD--------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133 (154)
T ss_dssp -CEEECTTEEESGGGGGSS--------CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHH
T ss_pred -EEEccCCCeeccHhhccC--------CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHH
Confidence 889999999999987631 112778999999999999999999999998 7766544
No 13
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.66 E-value=8.9e-16 Score=133.15 Aligned_cols=116 Identities=18% Similarity=0.304 Sum_probs=102.4
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccc
Q 013690 260 LCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 339 (438)
Q Consensus 260 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 339 (438)
.....++++|+|.+++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. +|..
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~~~~----------- 98 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNEW----------- 98 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-----TTEE-----------
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-----CCEE-----------
Confidence 345688999999999999999999999999999999999999999999999999999998 3332
Q ss_pred cccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHh
Q 013690 340 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 403 (438)
Q Consensus 340 ~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~ 403 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+++
T Consensus 99 ---~~~~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 99 ---ATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ---EEEECTTCEECCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred ---EEEecCCCEeeehHhhcC---------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 678999999999988742 14678999999999999999999999988 65553
No 14
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.66 E-value=8e-16 Score=130.84 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=101.6
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|++++++.+..++..++.+.|.||++|+++|++++.+|||.+|.|+++..+ .+|++... +
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~~---------~ 73 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN--GGAGSAAN---------S 73 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC--------------------C
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEEC--CCCCceEe---------e
Confidence 357889999999999999999999999999999999999999999999999999999843 44433110 0
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
.+..+++|++||+.+++. ..++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 74 ~~~~~~~G~~fG~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l 129 (142)
T 3mdp_A 74 TVCSVVPGAIFGVSSLIK---------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVL 129 (142)
T ss_dssp EEEEECTTCEECGGGSST---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred eEEEecCCCEechHHHcC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHH
Confidence 057899999999997752 125778999999999999999999999998 7777543
No 15
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.66 E-value=1.9e-15 Score=138.20 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=104.1
Q ss_pred hccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccce
Q 013690 265 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKD 344 (438)
Q Consensus 265 l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (438)
|+++|+|++++++.+..++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ .+|++.. +.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~ 66 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTH--LGGQERT------------LA 66 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--SSSCEEE------------EE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEEC--CCCCEEE------------EE
Confidence 467899999999999999999999999999999999999999999999999999854 6777655 89
Q ss_pred eccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 345 HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 345 ~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
.+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 67 ~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 120 (216)
T 4ev0_A 67 LLGPGELFGEMSLLDE---------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLA 120 (216)
T ss_dssp EECTTCEECHHHHHHC---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EecCCCEEeehhhcCC---------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHH
Confidence 9999999999988642 14678999999999999999999999998 87776543
No 16
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.1e-15 Score=137.64 Aligned_cols=122 Identities=13% Similarity=0.187 Sum_probs=107.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
..+++.+|.|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|++..
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~--~~G~e~~----------- 72 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFID--EKGIEQT----------- 72 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCEEE-----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEEC--CCCCEEE-----------
Confidence 456788899999999999999999999999999999999999999999999999999865 6777766
Q ss_pred cceeccCCCeechh-HHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 342 RKDHLADGDFWGEE-LVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 342 ~~~~l~~G~~FGe~-~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++|||. +++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 73 -~~~~~~g~~~ge~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 129 (194)
T 3dn7_A 73 -TQFAIENWWLSDYMAFQKQ---------QPADFYIQSVENCELLSITYTEQENLFERIPALERYFR 129 (194)
T ss_dssp -EEEEETTCEECCHHHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH
T ss_pred -EEEccCCcEEeehHHHhcC---------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH
Confidence 8899999999987 55421 14677999999999999999999999999 88876654
No 17
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.64 E-value=1.5e-15 Score=131.28 Aligned_cols=87 Identities=14% Similarity=0.270 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----cCCcHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQI------YLQT----KATRPKEMTLRMQE 207 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~------il~~----~~~~~~~~~~~~~~ 207 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|.++++++++.++. +... .+....+..++++.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999887 3332 24445566778899
Q ss_pred HHhhcccCCCCHHHHHH
Q 013690 208 MNEHMPIQKLSRSVQQQ 224 (438)
Q Consensus 208 i~~~m~~~~ip~~L~~r 224 (438)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999875
No 18
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=3.6e-15 Score=126.37 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=101.7
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|.+++++.+..++..++.+.|.||++|+++|++++.+|||.+|.|+++. .+ +
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~--~------------- 70 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT----PN--P------------- 70 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS----SS--C-------------
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEe----CC--c-------------
Confidence 4679999999999999999999999999999999999999999999999999999988 22 1
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
..+++|++||+.+++.+. ++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 71 --~~~~~G~~~G~~~~~~~~---------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 125 (138)
T 1vp6_A 71 --VELGPGAFFGEMALISGE---------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125 (138)
T ss_dssp --EEECTTCEECHHHHHHCC---------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred --ceECCCCEeeehHhccCC---------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHH
Confidence 368999999999887421 4667999999999999999999999998 77765544
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.63 E-value=3e-15 Score=139.05 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=109.7
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccc
Q 013690 260 LCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 339 (438)
Q Consensus 260 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 339 (438)
...+.++++|+|.+++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+ .+|++..
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~--------- 76 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMT--PTGSEAV--------- 76 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEC--TTSCEEE---------
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCEEE---------
Confidence 34578999999999999999999999999999999999999999999999999999999855 6777665
Q ss_pred cccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 340 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 340 ~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 77 ---~~~~~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 131 (237)
T 3fx3_A 77 ---VSVFTRGESFGEAVALRN---------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISI 131 (237)
T ss_dssp ---EEEEETTEEECHHHHHHT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred ---EEEeCCCCEechHHHhcC---------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 889999999999988731 14778999999999999999999999998 7777654
No 20
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=1.1e-15 Score=147.26 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=115.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeee
Q 013690 242 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSK 321 (438)
Q Consensus 242 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~ 321 (438)
.....++|+..|.+...+...+.++++|+|++++++.+..++..++.+.|.||++|+++||.++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 345567999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred cccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 322 ERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
+|. . +..+.+|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++..
T Consensus 96 ---~g~--~------------~~~~~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~ 146 (299)
T 3shr_A 96 ---EGV--K------------LCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMR 146 (299)
T ss_dssp ---TTE--E------------EEEECTTCEESCSGGGTT---------TBCCSEEEESSCEEEEEECHHHHHHHHHH
T ss_pred ---CCE--E------------EEEeCCCCeeeHhHHhcC---------CCCCcEEEEcCCeEEEEEcHHHHHHHhhH
Confidence 443 2 689999999999988632 26888999999999999999999999998
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.62 E-value=2.1e-15 Score=139.19 Aligned_cols=122 Identities=18% Similarity=0.274 Sum_probs=108.1
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|..++++.+..++..++.+.|.||++|+++||+++.+|||.+|.|+++..+ .+|++..
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 71 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA--PDGRENL----------- 71 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEEC--TTSCEEE-----------
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEEC--CCCcEEE-----------
Confidence 457899999999999999999999999999999999999999999999999999999854 5677665
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 72 -~~~~~~G~~~G~~~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 127 (227)
T 3d0s_A 72 -LTIMGPSDMFGELSIFDP---------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLL 127 (227)
T ss_dssp -EEEECTTCEESCHHHHSC---------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHH
T ss_pred -EEEecCCCEEeeHHHcCC---------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 889999999999988631 15778999999999999999999999998 77765443
No 22
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.60 E-value=7.8e-15 Score=136.09 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=107.6
Q ss_pred HHHhccccccccCcHHHHHHHHhh--cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDC--VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 339 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~--l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 339 (438)
...+.++|+|..++++.++.++.. ++.+.|.+|++|+++||+++.+|||.+|.|+++..+ .+|.+..
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~--------- 85 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA--KENIYTV--------- 85 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--GGGSCEE---------
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEEC--CCCCEEE---------
Confidence 467899999999999999999998 999999999999999999999999999999999854 5676665
Q ss_pred cccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 340 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 340 ~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++||+.+++. +.+++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 86 ---l~~~~~G~~fG~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 142 (232)
T 1zyb_A 86 ---IEQIEAPYLIEPQSLFG--------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYM 142 (232)
T ss_dssp ---EEEEESSEEECGGGGSS--------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHH
T ss_pred ---EEEccCCCeeeehHHhC--------CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHH
Confidence 88999999999998752 1123778999999999999999999999988 77765543
No 23
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.60 E-value=8.4e-15 Score=143.32 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=105.1
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.|+++|+|+.++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|.+ .
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~-~----------- 77 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVG--DDGVA-I----------- 77 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEEC--TTCCE-E-----------
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEEC--CCCcE-E-----------
Confidence 467899999999999999999999999999999999999999999999999999999854 45544 4
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhhhhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~p~l~~~~ 405 (438)
+..+++|++||+.+++.+ .+|+++++|.++|+++.|++++|.++++.|.+...+
T Consensus 78 -~~~~~~G~~fGe~~l~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~~~p~~~~~~ 131 (333)
T 4ava_A 78 -IARALPGMIVGEIALLRD---------SPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERL 131 (333)
T ss_dssp -EEEECTTCEESHHHHHHT---------CBCSSEEEESSCEEEEEECHHHHHHHHHSTTHHHHH
T ss_pred -EEEecCCCEeeHHHhcCC---------CCceEEEEEecCEEEEEEcHHHHHHHHhChHHHHHH
Confidence 789999999999998742 157889999999999999999999999336665443
No 24
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.60 E-value=6.9e-15 Score=136.05 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=106.2
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|.+..
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 71 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS--LGGRERV----------- 71 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEEC--C--CEEE-----------
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEEC--CCCceEE-----------
Confidence 357899999999999999999999999999999999999999999999999999999854 6777665
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 72 -~~~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 126 (231)
T 3e97_A 72 -LGDIYAPGVVGETAVLAH---------QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNL 126 (231)
T ss_dssp -EEEEESSEEESTTTTTCC---------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHH
T ss_pred -EEecCCCCEEeeHHHhCC---------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 889999999999977521 25788999999999999999999999988 7766543
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.59 E-value=1.3e-14 Score=132.93 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=106.1
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccc
Q 013690 263 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 342 (438)
Q Consensus 263 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (438)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|++..
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------ 68 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS--DEGREIT------------ 68 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEEC--TTSCEEE------------
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEEC--CCCCEEE------------
Confidence 57889999999999999999999999999999999999999999999999999999855 6777665
Q ss_pred ceeccCCCe--echhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 343 KDHLADGDF--WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 343 ~~~l~~G~~--FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++ ||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 69 ~~~~~~G~~~~~g~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (220)
T 3dv8_A 69 LYRLFDMDMCLLSASCIMRS---------IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTN 126 (220)
T ss_dssp EEEECTTCEESGGGGGGCTT---------CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEecCCCCeeehhHHHHhCC---------CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 789999999 788877521 25778999999999999999999999998 87776554
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=1.1e-14 Score=134.76 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=101.1
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccccee
Q 013690 266 KNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDH 345 (438)
Q Consensus 266 ~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 345 (438)
.++|+|..++++.+..++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ .+|++.. +..
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~--~~g~~~~------------~~~ 78 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREG--VYGRFHI------------SRI 78 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------CCCE------------EEE
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEE
Confidence 35799999999999999999999999999999999999999999999999999854 5676655 889
Q ss_pred ccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 346 LADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 346 l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 79 ~~~G~~~G~~~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 131 (232)
T 2gau_A 79 VKPGQFFGMRPYFAE---------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFL 131 (232)
T ss_dssp ECTTCEESHHHHHHT---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred eCCCCEeeeehhhCC---------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 999999999988742 14677999999999999999999999998 77665444
No 27
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=128.99 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeC-CCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcc
Q 013690 251 ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYF-KHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSAN 329 (438)
Q Consensus 251 ~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~-pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~ 329 (438)
+.|.+-........++++++|..++++.+..++..++.+.|. +|++|+++||.++.+|||.+|.|+++. .+|.+
T Consensus 4 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~g~~- 78 (134)
T 2d93_A 4 GSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH----PDGKV- 78 (134)
T ss_dssp SCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC----SSSCE-
T ss_pred hhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc----CCCcE-
Confidence 334333344455678899999999999999999999999999 999999999999999999999999997 55543
Q ss_pred cccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceE-EEcceEEEEEecHHHHHHHhhh
Q 013690 330 TSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSV-QALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
..+++|++||+.+++.. .++.+++ +|.++|+++.|++++|.+++++
T Consensus 79 --------------~~l~~G~~fG~~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~ 125 (134)
T 2d93_A 79 --------------ENLFMGNSFGITPTLDK---------QYMHGIVRTKVDDCQFVCIAQQDYWRILNH 125 (134)
T ss_dssp --------------EEECTTCEESCCSSSCC---------EECCSEEEESSSSEEEEEEEHHHHHHHSSC
T ss_pred --------------EEecCCCccChhHhcCC---------CcceeEEEEEecceEEEEEeHHHHHHHHHH
Confidence 45889999999877521 1466688 9999999999999999999887
No 28
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.58 E-value=7.8e-15 Score=127.23 Aligned_cols=63 Identities=8% Similarity=0.322 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKE 200 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~ 200 (438)
.|..|+||+++|||||||||++|.|..+++++++.+++|.+++++.+|.+++.+.+...++.+
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999887665433
No 29
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.58 E-value=7.6e-15 Score=135.17 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=107.1
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
.+.++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|++..
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~----------- 74 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQEKI----------- 74 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCC--GGGCCBC-----------
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEEC--CCCCEEE-----------
Confidence 467899999999999999999999999999999999999999999999999999999854 5676655
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+++|++||+.+++.+ .|++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 75 -~~~~~~g~~~G~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 130 (227)
T 3dkw_A 75 -LEVTNERNTFAEAMMFMD--------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130 (227)
T ss_dssp -CCEECTTEEESCTTTTTT--------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHH
T ss_pred -EEEcCCCCEeeeHHhcCC--------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 889999999999877521 112778999999999999999999999998 7777544
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.4e-14 Score=131.43 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=101.2
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccc
Q 013690 261 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFI 340 (438)
Q Consensus 261 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~ 340 (438)
..+.++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++. +|..
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-----~~~~------------ 67 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-----NDNK------------ 67 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-----TTSC------------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-----CCEE------------
Confidence 35688999999999999999999999999999999999999999999999999999987 3333
Q ss_pred ccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhH
Q 013690 341 SRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQV 401 (438)
Q Consensus 341 ~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l 401 (438)
+..+++|++||+.+++.+ .+++++++|.++|+++.|++++|.+++.+ |..
T Consensus 68 --~~~~~~g~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~ 118 (246)
T 3of1_A 68 --VNSSGPGSSFGELALMYN---------SPRAATVVATSDCLLWALDRLTFRKILLGSSFK 118 (246)
T ss_dssp --CEEECTTCEECHHHHHHT---------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSH
T ss_pred --EEecCCCCeeehhHHhcC---------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHH
Confidence 679999999999988742 15788999999999999999999999988 533
No 31
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-14 Score=133.05 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=102.8
Q ss_pred HHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccc
Q 013690 261 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFI 340 (438)
Q Consensus 261 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~ 340 (438)
...+++++|+|+.+++..+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+.+ .
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~----~~~~--~---------- 186 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSK----KGQG--V---------- 186 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEE----TTTE--E----------
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEE----cCCc--e----------
Confidence 45667889999999999999999999999999999999999999999999999999998 3322 2
Q ss_pred ccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHh
Q 013690 341 SRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 403 (438)
Q Consensus 341 ~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~ 403 (438)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |++.+
T Consensus 187 --~~~l~~g~~fGe~~~~~~---------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 187 --INKLKDHDYFGEVALLND---------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp --EEEEETTCEECHHHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred --EEEcCCCCcccHHHHhCC---------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 789999999999998742 15788999999999999999999999998 66653
No 32
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.56 E-value=1.7e-14 Score=133.31 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
.|..|+||+++|||||||||++|.|..|++++++.|++|.+++|+.+|.+++.+++
T Consensus 165 ~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999876
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=1.9e-14 Score=138.58 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=107.3
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 338 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 338 (438)
..+...++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++..+ ..+|.+..
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~-~~~g~~~~-------- 223 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED-SPNEDPVF-------- 223 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECC-SSSCCCEE--------
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEec-CCCCcceE--------
Confidence 345678899999999999999999999999999999999999999999999999999999831 01444444
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 224 ----~~~l~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 278 (299)
T 3shr_A 224 ----LRTLGKGDWFGEKALQGE---------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKA 278 (299)
T ss_dssp ----EEEEETTCEECGGGGSSS---------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHH
T ss_pred ----EEEcCCCCEeChHHHhCC---------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHH
Confidence 789999999999988631 25788999999999999999999999999 7665443
No 34
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.55 E-value=5.8e-14 Score=129.46 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=92.8
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccc
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 341 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 341 (438)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ .+|++..
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~----------- 76 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEE--DDDRELV----------- 76 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTSCEEE-----------
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE-----------
Confidence 457888999999999999999999999999999999999999999999999999999855 6777765
Q ss_pred cceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh
Q 013690 342 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 342 ~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 398 (438)
+..+++|++||+.+++.+ .+++.++++|.++|+++.|++++|.+++.+
T Consensus 77 -~~~~~~g~~~G~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~ 124 (230)
T 3iwz_A 77 -LGYFGSGEFVGEMGLFIE--------SDTREVILRTRTQCELAEISYERLQQLFQT 124 (230)
T ss_dssp -EEEECTTCEESCGGGTSC--------CSBCCSEEEESSCEEEEEEEHHHHHHHHHT
T ss_pred -EEEecCCCEEEehhhhcC--------CCCceeEEEEcCcEEEEEEeHHHHHHHHHH
Confidence 889999999999987621 125778999999999999999999999886
No 35
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.54 E-value=1.8e-14 Score=120.15 Aligned_cols=58 Identities=7% Similarity=0.304 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 195 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~ 195 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++.+.+..
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999997643
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=8.9e-14 Score=133.13 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=103.8
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCC-cccccccCccc
Q 013690 260 LCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGS-ANTSHSRDNSK 338 (438)
Q Consensus 260 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~-~~~~~~~~~~~ 338 (438)
....++.++++|..+++..+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++.... .+|+ ...
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~~~-------- 223 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRR--SENEEFVE-------- 223 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEC--STTSCEEE--------
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEec--CCCCccEE--------
Confidence 34567788999999999999999999999999999999999999999999999999998743 3443 233
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |.+.
T Consensus 224 ----~~~l~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~ 275 (291)
T 2qcs_B 224 ----VGRLGPSDYFGEIALLMN---------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDIL 275 (291)
T ss_dssp ----EEEECTTCEECSGGGTCC---------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred ----EEEeCCCCEecHHHHcCC---------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHH
Confidence 789999999999988631 25888999999999999999999999999 6654
No 37
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=5e-14 Score=142.40 Aligned_cols=122 Identities=17% Similarity=0.277 Sum_probs=107.5
Q ss_pred HHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCc
Q 013690 257 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDN 336 (438)
Q Consensus 257 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~ 336 (438)
..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++.. .+|.+..
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~---~~G~~~~------ 209 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK---CDGVGRC------ 209 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEE---CSSCEEE------
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEe---cCCCEEE------
Confidence 3445567899999999999999999999999999999999999999999999999999999983 4666655
Q ss_pred ccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 337 SKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 337 ~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+.+|++|||.+++.+ .+|.++++|.++|+++.|++++|.+++.. |..+
T Consensus 210 ------v~~l~~G~~fGe~all~~---------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 210 ------VGNYDNRGSFGELALMYN---------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp ------EEEEESCCEECGGGGTSC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ------EEEecCCCEEeeHHHhcC---------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 789999999999988631 26888999999999999999999999998 5443
No 38
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.52 E-value=8.4e-14 Score=126.55 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=97.5
Q ss_pred cccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccC
Q 013690 269 KEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLAD 348 (438)
Q Consensus 269 ~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 348 (438)
++++.+|++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ .+|++.. +..+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~~~~~ 67 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQ 67 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTCCEEE------------EEEEET
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCC
Confidence 46677999999999999999999999999999999999999999999999854 6777665 889999
Q ss_pred CCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 349 GDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 349 G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
|++||+.+++.+ .+++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 68 g~~~G~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 117 (210)
T 3ryp_A 68 GDFIGELGLFEE--------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRL 117 (210)
T ss_dssp TCEESCTTTTST--------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHH
T ss_pred CCEeeeHHHhcC--------CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 999999977631 124778999999999999999999999998 7776554
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=8.9e-14 Score=133.12 Aligned_cols=116 Identities=18% Similarity=0.304 Sum_probs=102.7
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 338 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 338 (438)
+...+.++++|+|+.++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|.++. +|. .
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~g~--~-------- 99 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNE--W-------- 99 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-----TTE--E--------
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-----CCe--E--------
Confidence 3456789999999999999999999999999999999999999999999999999999998 442 2
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+++|++||+.+++.+ .+|.++++|.++|+++.|++++|.+++.. |.+.
T Consensus 100 ----~~~l~~G~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (291)
T 2qcs_B 100 ----ATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 151 (291)
T ss_dssp ----EEEECTTCEECGGGGTCC---------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ----EEEcCCCCccchHHHhcC---------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHH
Confidence 689999999999987631 25788999999999999999999999987 5443
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.51 E-value=6.1e-14 Score=143.67 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=116.8
Q ss_pred ccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCC
Q 013690 248 LPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGS 327 (438)
Q Consensus 248 Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~ 327 (438)
.|+..|.+-..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|.++..+ .+|.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~--~~g~ 104 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE--TSSH 104 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECS--SSCG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEec--CCCC
Confidence 46777777777788889999999999999999999999999999999999999999999999999999999854 4553
Q ss_pred c--ccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 328 A--NTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 328 ~--~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
+ .. +..+++|++||+.+ +.+ .+++++++|.++|+++.|++++|.+++.+ |.+...
T Consensus 105 ~~~~~------------~~~~~~G~~fGe~~-l~~---------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~ 162 (469)
T 1o7f_A 105 QDAVT------------ICTLGIGTAFGESI-LDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (469)
T ss_dssp GGCEE------------EEEECTTCEECGGG-GGT---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTT
T ss_pred CcceE------------EEEccCCCCcchhh-hCC---------CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHH
Confidence 2 33 78999999999987 531 15788999999999999999999999998 776654
Q ss_pred hh
Q 013690 405 TE 406 (438)
Q Consensus 405 ~r 406 (438)
+.
T Consensus 163 l~ 164 (469)
T 1o7f_A 163 LL 164 (469)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 41
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.50 E-value=3.1e-14 Score=121.67 Aligned_cols=57 Identities=9% Similarity=0.364 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|.++++++++.+++.+.+.
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999887543
No 42
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.49 E-value=5.6e-14 Score=128.94 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=100.5
Q ss_pred HHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccccccc
Q 013690 263 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 342 (438)
Q Consensus 263 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (438)
.+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++ .+ .+|++..
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~--~~G~~~~------------ 68 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LA--YEDKEFT------------ 68 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EE--CSSCEEE------------
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-EC--CCCCEEE------------
Confidence 46788999999999999999999999999999999999999999999999999995 33 5777665
Q ss_pred ceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 343 KDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 343 ~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++||+ ++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 69 ~~~~~~G~~~G~----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 117 (220)
T 2fmy_A 69 LAILEAGDIFCT----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMV 117 (220)
T ss_dssp EEEEETTCEEES----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHH
T ss_pred EEEcCCCCEeCC----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 889999999998 1456999999999999999999999988 77765544
No 43
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.48 E-value=4.2e-13 Score=121.63 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=95.6
Q ss_pred CcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 274 LDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 274 ~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+|++.+..++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ .+|++.. +..+++|++||
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------~~~~~~g~~~G 66 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIED--DDGREMI------------IGYLNSGDFFG 66 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEEETTCEES
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCCcc
Confidence 578899999999999999999999999999999999999999999854 6677665 88999999999
Q ss_pred hhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 354 EELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 354 e~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
+.+++.+.. ..+++.++++|.++|+++.|++++|.+++++ |.+...+
T Consensus 67 ~~~~~~~~~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 114 (207)
T 2oz6_A 67 ELGLFEKEG-----SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTL 114 (207)
T ss_dssp CTTTCC----------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred cHHHhcCCC-----CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHH
Confidence 997753210 0004677999999999999999999999998 8776544
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.48 E-value=1.4e-13 Score=139.14 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=101.4
Q ss_pred HHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccC------CCcccccccC
Q 013690 262 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTN------GSANTSHSRD 335 (438)
Q Consensus 262 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~------g~~~~~~~~~ 335 (438)
..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+ |.+..
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~--~~~~~~~~g~~~~----- 338 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKR--KGKSEVEENGAVE----- 338 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC--------------CE-----
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCcccccCCceeE-----
Confidence 357888999999999999999999999999999999999999999999999999999843 22 44444
Q ss_pred cccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 336 NSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 336 ~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+++|++|||.+++.+ .+|+++|+|.++|+++.|++++|.+++.. |++.
T Consensus 339 -------l~~l~~G~~fGE~all~~---------~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~ 390 (416)
T 3tnp_B 339 -------IARCFRGQYFGELALVTN---------KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIM 390 (416)
T ss_dssp -------EEEECTTCEESGGGGTCC---------SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred -------EEEeCCCCEecHHHHhCC---------CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHH
Confidence 789999999999988631 25888999999999999999999999999 6654
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=138.85 Aligned_cols=121 Identities=16% Similarity=0.257 Sum_probs=105.4
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCC-cccccccCcc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGS-ANTSHSRDNS 337 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~-~~~~~~~~~~ 337 (438)
..+..++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|+ ...
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~--~~~~~~~~------- 314 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRR--SPNEEYVE------- 314 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCS--SSSSCCCE-------
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCCCceEE-------
Confidence 455678899999999999999999999999999999999999999999999999999999843 3343 223
Q ss_pred cccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 338 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 338 ~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.. |++.
T Consensus 315 -----v~~l~~Gd~fGe~all~~---------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~ 366 (381)
T 4din_B 315 -----VGRLGPSDYFGEIALLLN---------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEIL 366 (381)
T ss_dssp -----EEEECTTCEECTTGGGSC---------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHH
T ss_pred -----EEEeCCCCEechHHHhCC---------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHH
Confidence 789999999999988731 25888999999999999999999999998 6554
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=138.50 Aligned_cols=116 Identities=15% Similarity=0.276 Sum_probs=103.0
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 338 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 338 (438)
+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|..
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-----~~~~---------- 190 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-----NGEW---------- 190 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-----TTEE----------
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-----CCeE----------
Confidence 3456789999999999999999999999999999999999999999999999999999998 3332
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
+..+++|++|||.+++.+ .+|.++++|.++|+++.|++++|.+++.+ |..+
T Consensus 191 ----v~~l~~G~~fGe~all~~---------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~ 242 (381)
T 4din_B 191 ----VTNISEGGSFGELALIYG---------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRK 242 (381)
T ss_dssp ----EEEEESSCCBCGGGGTSC---------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred ----eeeCCCCCEEEchHHhcC---------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHH
Confidence 678999999999988631 25888999999999999999999999988 5444
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.47 E-value=7.5e-14 Score=128.37 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=99.5
Q ss_pred HhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccc
Q 013690 264 LLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 343 (438)
Q Consensus 264 ~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (438)
+++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++ .+ .+|++.. +
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~--~~G~~~~------------~ 65 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LV--GEEREIS------------L 65 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EE--ETTEEEE------------E
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-EC--CCCCEEE------------E
Confidence 3678999999999999999999999999999999999999999999999999997 43 5776665 8
Q ss_pred eeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 344 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 344 ~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
..+++|++|| . ++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 66 ~~~~~G~~fG-~---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 113 (222)
T 1ft9_A 66 FYLTSGDMFC-M---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLI 113 (222)
T ss_dssp EEEETTCEEE-S---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHH
T ss_pred EEcCCCCEec-C---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 8999999999 1 4667999999999999999999999988 77776554
No 48
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.45 E-value=2.5e-13 Score=124.15 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=93.3
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceecc
Q 013690 268 VKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLA 347 (438)
Q Consensus 268 i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 347 (438)
-|.|+..++.....+...++.+.|.+|++|+++||+++.+|||.+|.|+++..+ .+|++.. +..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~~~ 69 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVS--ENGKTLE------------IDEIK 69 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--TTSCEEE------------EEEEC
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCEEE------------EEEec
Confidence 478888899999999999999999999999999999999999999999999854 6777665 88999
Q ss_pred CCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhH
Q 013690 348 DGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 404 (438)
Q Consensus 348 ~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~ 404 (438)
+|++||+.+++.+ .+++.++++|.++|+++.|++++|.+++.+ |.+...
T Consensus 70 ~G~~~G~~~~~~~--------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~ 119 (213)
T 1o5l_A 70 PVQIIASGFIFSS--------EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLF 119 (213)
T ss_dssp SSEESSGGGTTSS--------SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred CCCEeeeHHHhcC--------CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHH
Confidence 9999999977521 124778999999999999999999999998 877643
No 49
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.45 E-value=4.9e-13 Score=126.28 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=95.5
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCe
Q 013690 272 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 351 (438)
Q Consensus 272 ~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~ 351 (438)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ .+|++.. +..+++|++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e~~------------~~~~~~G~~ 120 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQGDF 120 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEEC--TTCCEEE------------EEEEETTCE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCE
Confidence 44899999999999999999999999999999999999999999999854 6777665 889999999
Q ss_pred echhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 352 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 352 FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
||+.+++.. .+++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 121 ~Ge~~~~~~--------~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l 167 (260)
T 3kcc_A 121 IGELGLFEE--------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRL 167 (260)
T ss_dssp ESCTTTTST--------TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHH
T ss_pred EeehHHhCC--------CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 999977631 125778999999999999999999999998 7776544
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.45 E-value=2.8e-13 Score=151.34 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=108.6
Q ss_pred HHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecc
Q 013690 244 SLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKER 323 (438)
Q Consensus 244 il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~ 323 (438)
.|++-| .-|.+=-.+...+.|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++++|+|.+|.|.|+..+..
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3343333344456899999999999999999999999999999999999999999999999999999984311
Q ss_pred cCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHH
Q 013690 324 TNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 402 (438)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~ 402 (438)
.++.+.. +..+++|+.||| +++.+ .||+++|+|.++|++++|++++|..++.. |+..
T Consensus 103 ~~~~~~~------------v~~l~~G~sFGE-all~n---------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 SHQDAVT------------ICTLGIGTAFGE-SILDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CTTSCEE------------EEEEETTCEECG-GGGGT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCcee------------EEEecCCcchhh-hhccC---------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 2222333 789999999999 66531 16899999999999999999999999987 5443
No 51
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.42 E-value=2e-12 Score=106.30 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++..+.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999865443
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=5.4e-13 Score=136.59 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=101.1
Q ss_pred HHHHHhccccccccCcHHHHHHHHhhcce-eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCccc
Q 013690 260 LCLDLLKNVKEFKTLDEEVLDALCDCVKP-AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 338 (438)
Q Consensus 260 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~-~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 338 (438)
...+.+.++|+|..++++.+..++..++. +.|.+|++|+++||.++.+|||.+|.|+++. . +.. .
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~----~-~~~-~-------- 399 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI----Y-GKG-V-------- 399 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE----T-TTE-E--------
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE----c-CCe-e--------
Confidence 34578999999999999999999999985 4899999999999999999999999999998 2 222 2
Q ss_pred ccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcc-eEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 339 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-NVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 339 ~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+..+++|++|||.+++.+ .+|+++++|.+ +|+++.|++++|.+++.+ |.+...+.
T Consensus 400 ----~~~l~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 400 ----VCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp ----EEEEETTCEECGGGGTCC---------SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred ----EEEecCCCEEEEehhhcC---------CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 789999999999988631 25888999998 799999999999999999 77665544
No 53
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.38 E-value=1.3e-12 Score=135.10 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCC
Q 013690 137 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQK 216 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~ 216 (438)
..|..|+||+++|||||||||+.|.+..+++++++++++|.+++++.++.+.+.++....+.+ .++..+.-++++.-..
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~-~~~~~~l~~h~iicg~ 452 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET-EGEEQAQYLQVTSSPK 452 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCEEEeCC
Confidence 358889999999999999999999999999999999999999999999999887766543211 1111122233333333
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHH
Q 013690 217 LSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKREL 260 (438)
Q Consensus 217 ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~ 260 (438)
.|.....+ -++.+...++.-..+|.+.++.++....
T Consensus 453 ~~~~~~l~--------~~~~~~~~~~s~~~el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 453 IPSSPDLK--------KSRSASTISKSDYMEIQEGVNNSNEDFR 488 (514)
T ss_dssp --------------------------------------------
T ss_pred CccchhHH--------hcccCCCccccccccccccccccccccc
Confidence 33222111 0112233345555677777777665443
No 54
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.37 E-value=1.3e-12 Score=122.41 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=98.0
Q ss_pred hccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccce
Q 013690 265 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKD 344 (438)
Q Consensus 265 l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (438)
+.++..+..+|++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ .+|++.. +.
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------~~ 76 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIF--EDGSEKL------------LY 76 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEEC--TTSCEEE------------EE
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE------------EE
Confidence 344444578999999999999999999999999999999999999999999999865 6777765 88
Q ss_pred eccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 345 HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 345 ~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
.+++|++||+ ++. .. +.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 77 ~~~~G~~~G~--~l~---------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 126 (250)
T 3e6c_C 77 YAGGNSLIGK--LYP---------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEI 126 (250)
T ss_dssp EECTTCEECC--CSC---------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHH
T ss_pred EecCCCEEee--ecC---------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 9999999999 431 11 567999999999999999999999988 7666544
No 55
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.36 E-value=4e-12 Score=101.35 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 37889999999999999999999999999999999999999999999999988764
No 56
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.35 E-value=4.3e-12 Score=118.42 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcc---eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 276 EEVLDALCDCVK---PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 276 ~~~l~~l~~~l~---~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
++.++.++.... .+.|++|++|+++|++++.+|||.+|.|+++..+ .+|++.. +..+++|++|
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~--~~G~~~~------------l~~~~~g~~~ 95 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVY--EAGEEIT------------VALLRENSVF 95 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTCCEEE------------EEEECTTCEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEEE------------EEEecCCCEE
Confidence 667888888888 9999999999999999999999999999999855 6777766 8899999999
Q ss_pred chhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHh
Q 013690 353 GEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 405 (438)
Q Consensus 353 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~ 405 (438)
|+.+++.+.. .++.++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 96 G~~~~~~~~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 142 (243)
T 3la7_A 96 GVLSLLTGNK-------SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLM 142 (243)
T ss_dssp SCHHHHSSCC-------SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHH
T ss_pred cchHHhCCCC-------CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 9998863210 02457999999999999999999999988 7776554
No 57
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.34 E-value=3.7e-13 Score=108.73 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.+++.+.+.
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999888654
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.34 E-value=2.6e-12 Score=137.36 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=109.5
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcc-eeeeCCCcEEEecCCCCCeEEEEEecEEEEEee
Q 013690 242 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVK-PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 320 (438)
Q Consensus 242 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~-~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~ 320 (438)
..++...|. .|.+...+...+.+.++|+|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++.
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 445544343 344444444567899999999999999999999998 78999999999999999999999999999998
Q ss_pred ecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcc-eEEEEEecHHHHHHHhhh-
Q 013690 321 KERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-NVEAFGLMAHDLKHVFIE- 398 (438)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~- 398 (438)
. |. .. +..+++|++||+.+++.+ .++.++++|.+ +|+++.|++++|.+++.+
T Consensus 90 ---~-g~-~i------------l~~l~~Gd~fGe~al~~~---------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~ 143 (694)
T 3cf6_E 90 ---Y-GK-GV------------VCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDV 143 (694)
T ss_dssp ---T-TT-EE------------EEEEETTCEECHHHHHHT---------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTT
T ss_pred ---e-CC-EE------------EEEeCCCCEeehHHHhCC---------CCceEEEEEeeCceEEEEEeHHHHHHHHHHC
Confidence 3 33 23 789999999999988742 14778999999 599999999999999998
Q ss_pred hhHH
Q 013690 399 HQVA 402 (438)
Q Consensus 399 p~l~ 402 (438)
|.+.
T Consensus 144 p~l~ 147 (694)
T 3cf6_E 144 EANT 147 (694)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 5553
No 59
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.30 E-value=1.8e-11 Score=94.42 Aligned_cols=54 Identities=9% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYL 191 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il 191 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999999875
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.30 E-value=1.1e-11 Score=138.42 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=98.1
Q ss_pred HHHHHHhccccccccCcHHHHHHHHhhcceeee-CCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcc
Q 013690 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFY-FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNS 337 (438)
Q Consensus 259 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~-~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~ 337 (438)
+...+.+.++|.|.+++...++.++..+....+ ..|++|+++||.++.+|||.+|.|+|+. ...+.
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~----~~~~~--------- 399 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI----YGKGV--------- 399 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE----TTTEE---------
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE----cCCcc---------
Confidence 344667899999999999999999999997654 6799999999999999999999999987 22222
Q ss_pred cccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcce-EEEEEecHHHHHHHhhh
Q 013690 338 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKN-VEAFGLMAHDLKHVFIE 398 (438)
Q Consensus 338 ~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~ 398 (438)
+..+++||+|||.+++.+ .||.+||+|.++ |++++++++||.+++.+
T Consensus 400 -----v~~L~~Gd~FGElALL~~---------~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 400 -----VCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp -----EEEEETTCEECGGGGTCS---------CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred -----eEEecCCCcccchhhccC---------CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 689999999999998732 269999999985 99999999999999988
No 61
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.25 E-value=6e-11 Score=110.15 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=90.1
Q ss_pred cCcHHHHHHHHh--hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCC
Q 013690 273 TLDEEVLDALCD--CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGD 350 (438)
Q Consensus 273 ~~s~~~l~~l~~--~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~ 350 (438)
+++++.+..+.. .++.+.|.+|++|+++||+++.+|||.+|.|+++..+ .+|++.. +..+ +|+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e~~------------~~~~-~G~ 67 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSIS--ENGTIMN------------LQYY-KGA 67 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEE-ESS
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEEC--CCCCEEE------------EEEc-CCC
Confidence 578888888874 5999999999999999999999999999999999855 6777665 7778 999
Q ss_pred eechhHHHhhhccCCCCCCCC-ccceEEEc-ceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 351 FWGEELVAWVLRDRSLSNIPM-STRSVQAL-KNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 351 ~FGe~~ll~~~~~~~~~~~~~-r~~tv~A~-~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
+||+.+++.+. ++ +..++.|. ++|+++.|++++|.+++.+ |.+...+.
T Consensus 68 ~~Ge~~~~~~~--------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 118 (238)
T 2bgc_A 68 FVIMSGFIDTE--------TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVF 118 (238)
T ss_dssp EEEESBCTTTC--------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EecchhhhcCC--------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 99999775311 11 24577777 5999999999999999988 77665443
No 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.15 E-value=1e-12 Score=115.63 Aligned_cols=58 Identities=9% Similarity=0.351 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 195 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~ 195 (438)
.|..|+||+++|+|||||||++|.|..+++++++.+++|.++++++++.+++.+.+..
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777999999999999999999999999999999999999999999999998887543
No 63
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.12 E-value=1.9e-10 Score=103.30 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=71.1
Q ss_pred eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCC
Q 013690 289 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSN 368 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~ 368 (438)
+.|.+|++|+++||+++.+|||.+|.|+++..+ .+|.+.. +..+++|++||+ +++.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~~~~~G~~~Ge-~~~~~-------- 58 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELL--PDGRLIT------------LRHVLPGDYFGE-EALEG-------- 58 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEEC--TTSCEEE------------EEEECTTCEECG-GGGTC--------
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEecCCCEech-hhhCC--------
Confidence 578999999999999999999999999999854 5676665 889999999999 88631
Q ss_pred CCCccceEEEcceEEEEEecHHHHH
Q 013690 369 IPMSTRSVQALKNVEAFGLMAHDLK 393 (438)
Q Consensus 369 ~~~r~~tv~A~~~~~l~~L~~~~f~ 393 (438)
.++.++++|.++|+++.|++++|.
T Consensus 59 -~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 59 -KAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp -SBCSSEEEESSSEEEEEECGGGCC
T ss_pred -CCceeEEEECCcEEEEEEcHHHcC
Confidence 157789999999999999999987
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.11 E-value=2.5e-10 Score=109.49 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 194 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~ 194 (438)
.|..|+|||++|||||||||++|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478899999999999999999999999999999999999999999999988887653
No 65
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.04 E-value=4.4e-10 Score=109.01 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
.|..|+||+++|||||||||++|.+..+++++++.+++|.+++|+++|.+.+.+....+
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999998876543
No 66
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.99 E-value=9.4e-10 Score=105.22 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
.|..|+||+++|||||||||++|.|...++++++.+++|..+++++++.+++.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998865
No 67
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.97 E-value=6.5e-10 Score=100.29 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=71.4
Q ss_pred HHhhcceeeeCCCcEEEecCCCC--CeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHh
Q 013690 282 LCDCVKPAFYFKHTHIVLEGDPI--YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAW 359 (438)
Q Consensus 282 l~~~l~~~~~~pge~I~~~Gd~~--~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~ 359 (438)
+...++.+.|++|++|+++||++ +.+|||.+|.|.++..+ .+|++.. +..+++|++||+ +++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~~~~g~~~G~-~~l~ 65 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVD--EEGNALT------------LRLVRPGGFFGE-EALF 65 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEEC--TTSCEEE------------EEEECTTCEECT-HHHH
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEEecCCCEeee-hhcC
Confidence 34578889999999999999999 99999999999999854 6777765 889999999999 7753
Q ss_pred hhccCCCCCCCCccceEEEcceEEEEEecHHHHH
Q 013690 360 VLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLK 393 (438)
Q Consensus 360 ~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~ 393 (438)
+ .++.++++|.++|+++.| +++|.
T Consensus 66 ~---------~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 66 G---------QERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp T---------CCBCSEEEESSCEEEEEC-CSSCC
T ss_pred C---------CCcceEEEEcccEEEEEE-hHhcC
Confidence 1 146779999999999999 88775
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.93 E-value=5e-09 Score=101.27 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
.|..|+|||++|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+....+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999999998876543
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.82 E-value=1.6e-08 Score=105.93 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 013690 139 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGN-IQIYL 191 (438)
Q Consensus 139 Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~-i~~il 191 (438)
|..|+||+++|||||||||++|.|..+++++++++++|.+++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999988 44443
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.81 E-value=9.7e-09 Score=98.20 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWEN------FFVILVTISGLVLMLFLIGNIQIYLQTKATRPK 199 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~------~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~ 199 (438)
.|+.|+||+++|+|||||||++|.+...+ +++++.+++|..+++++++.+++.+....++..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~~ 291 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC-
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998887 599999999999999999999999887765443
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.75 E-value=4.4e-08 Score=94.84 Aligned_cols=58 Identities=10% Similarity=0.316 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSS--NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 195 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~--~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~ 195 (438)
.+..++|||+.|+|||||||+.|. +..-++++++.+++|.++.|+.+|.+..-++...
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 356699999999999999999996 6789999999999999999999998887776544
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.74 E-value=1.5e-08 Score=95.39 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
.|..|+||+++|+|||||||++|.|+..++++++.+++|..+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999876543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.61 E-value=3.4e-08 Score=93.06 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWE-------NFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E-------~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
.|+.|+||++.|+|||||||++|.+... ++++++.+++|.++++++++.+++++..
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988854 9999999999999999999999987754
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.59 E-value=2.1e-07 Score=90.10 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcccCCccccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTS--SNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p--~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
.+..++|||+.|+|||||||+.| .+..-++++++.+++|.++.|+..|.+..-++...+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 47789999999999999999976 488999999999999999999999988887766543
No 75
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.51 E-value=7e-09 Score=101.48 Aligned_cols=57 Identities=11% Similarity=0.295 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013690 139 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 195 (438)
Q Consensus 139 Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~ 195 (438)
|..|+||+++|+|||||||++|.|..+++++++.+++|.++++++++.+++.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445999999999999999999999999999999999999999999999998876643
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.09 E-value=4.1e-06 Score=79.74 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhcccCCc-ccc-cCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013690 137 QKFLHCFRWGLRNLSCFGQN-LQT-SSNAWE----NFFVILVTISGLVLMLFLIGNIQIYLQTKAT 196 (438)
Q Consensus 137 ~~Yi~slYwa~~tmtTvGyG-di~-p~~~~E----~~~~i~~~l~g~~~fayiig~i~~il~~~~~ 196 (438)
..+..|++|++.|+||+||| |+. |.+..- ..+.+++++.|.++.+..++.+.+-+.+..+
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999 985 765543 7888999999999999999998887765443
No 77
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.22 E-value=0.027 Score=32.78 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 013690 413 VKDAARIIQLAWRRRYSSRN 432 (438)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (438)
..++|.+||+||| +|..|.
T Consensus 5 Ee~aA~vIQrA~R-~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYR-RYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHHHHH-HHHHHh
Confidence 4578999999999 665543
No 78
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.22 E-value=0.28 Score=44.33 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcccCCccccc----CChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTS----SNAWENFF-VILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p----~~~~E~~~-~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
..-.|++|.+.++||.|++|+-. .+..-.++ ..++.+.+.++....++-+.+-.++
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999721 12222233 3334444444455555555554443
No 79
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=94.14 E-value=0.036 Score=33.29 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHhhh
Q 013690 412 SVKDAARIIQLAWRRRYSSRN 432 (438)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (438)
...++|.+||+||| +|.-|+
T Consensus 4 ~Ee~aA~vIQrA~R-~yl~rr 23 (31)
T 2l53_B 4 SEEVSAMVIQRAFR-RHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHH
Confidence 35688999999999 665444
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.78 E-value=19 Score=27.98 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=45.8
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCC
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 365 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~ 365 (438)
+....+.||..+-..-...+++++|++|++++.. +++ ...+++||.+=.- .
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~ip---------~ 88 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-----DGA---------------QRRLHQGDLLYLG---------A 88 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-----TTE---------------EEEECTTEEEEEC---------T
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-----CCE---------------EEEECCCCEEEEC---------C
Confidence 4455678888876655566799999999999988 332 3578899877533 1
Q ss_pred CCCCCCccceEEEcceEEEEE
Q 013690 366 LSNIPMSTRSVQALKNVEAFG 386 (438)
Q Consensus 366 ~~~~~~r~~tv~A~~~~~l~~ 386 (438)
....++++.+++.++.
T Consensus 89 -----~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 89 -----GAAHDVNAITNTSLLV 104 (114)
T ss_dssp -----TCCEEEEESSSEEEEE
T ss_pred -----CCcEEEEeCCCcEEEE
Confidence 1223677777776544
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=69.80 E-value=19 Score=32.01 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.8
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccC
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDR 364 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~ 364 (438)
.+....+.||+.+-..-.+.+.+++|++|++++.. +|. ...+++||++=--
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-----~~~---------------~~~l~~Gd~~~~p--------- 88 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-----ENN---------------KKTISNGDFLEIT--------- 88 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-----SSC---------------EEEEETTEEEEEC---------
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEEEC---------
Confidence 34456689999988777788999999999999988 332 3578899876522
Q ss_pred CCCCCCCccceEEEcceEEEEEe
Q 013690 365 SLSNIPMSTRSVQALKNVEAFGL 387 (438)
Q Consensus 365 ~~~~~~~r~~tv~A~~~~~l~~L 387 (438)
. .....++|.+++.++.+
T Consensus 89 ~-----~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 89 A-----NHNYSIEARDNLKLIEI 106 (227)
T ss_dssp S-----SCCEEEEESSSEEEEEE
T ss_pred C-----CCCEEEEECCCcEEEEE
Confidence 1 12347889999999876
No 82
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=67.58 E-value=3.2 Score=35.48 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHHHHhh
Q 013690 412 SVKDAARIIQLAWRRRYSSR 431 (438)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (438)
...+||.+||+||| +++.|
T Consensus 128 ~e~~aA~~IQra~R-~~~~r 146 (168)
T 4dck_A 128 HEEVSAMVIQRAFR-RHLLQ 146 (168)
T ss_dssp HHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHh
Confidence 45678999999999 55443
No 83
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=62.41 E-value=38 Score=25.75 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=44.0
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCC
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 365 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~ 365 (438)
+....+.||..+-..-....++++|.+|.+.+.. +|+ ...+.+|+.+=.- +
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ip---------~ 92 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-----DQE---------------TYRVAEGQTIVMP---------A 92 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-----TTE---------------EEEEETTCEEEEC---------T
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEEEC---------C
Confidence 3445677888765444446789999999999887 332 3578899987522 1
Q ss_pred CCCCCCccceEEEcceEEEEEe
Q 013690 366 LSNIPMSTRSVQALKNVEAFGL 387 (438)
Q Consensus 366 ~~~~~~r~~tv~A~~~~~l~~L 387 (438)
. ....+.+.++++++.+
T Consensus 93 ~-----~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 93 G-----IPHALYAVEAFQMLLV 109 (115)
T ss_dssp T-----SCEEEEESSCEEEEEE
T ss_pred C-----CCEEEEECCCceEEEE
Confidence 1 2235666677776654
No 84
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=62.06 E-value=26 Score=26.89 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred eCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCC
Q 013690 291 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIP 370 (438)
Q Consensus 291 ~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~ 370 (438)
+.||..+-......+++++|++|.+.+.. ++. ...+.+||.+=-- +.
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~i~---------~~---- 91 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITF-----DDQ---------------KIDLVPEDVLMVP---------AH---- 91 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEE-----TTE---------------EEEECTTCEEEEC---------TT----
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEE-----CCE---------------EEEecCCCEEEEC---------CC----
Confidence 55666554344456789999999999887 332 3578899976432 11
Q ss_pred CccceEEEcceEEEEEe
Q 013690 371 MSTRSVQALKNVEAFGL 387 (438)
Q Consensus 371 ~r~~tv~A~~~~~l~~L 387 (438)
....+.+.+++.++.+
T Consensus 92 -~~H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 92 -KIHAIAGKGRFKMLQI 107 (114)
T ss_dssp -CCBEEEEEEEEEEEEE
T ss_pred -CcEEEEeCCCcEEEEE
Confidence 1225566667766654
No 85
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=60.16 E-value=9.8 Score=40.61 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcccCCcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013690 138 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 193 (438)
Q Consensus 138 ~Yi~slYwa~~tmtTvGyGdi~p~~~~E~~~~i~~~l~g~~~fayiig~i~~il~~ 193 (438)
....++++++.++++.| ++..|.+...+++.+++++++.++.+..-+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999999888 68899999999999999999999999999999999974
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=60.02 E-value=19 Score=28.50 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=33.4
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
...+.||..+-.. ...+++++|++|++.+.. +|. ...+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-----~g~---------------~~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST-----DGE---------------TVTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-----TTE---------------EEEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEEE
Confidence 3456788766443 367899999999999987 332 357899998753
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=59.68 E-value=33 Score=26.19 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=33.7
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.....+.||+.-.. ...+++++|++|++.+.. .+|. ...+++||.+=
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i----~~g~---------------~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT----EDGK---------------KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE----TTCC---------------EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE----CCCC---------------EEEECCCCEEE
Confidence 33456778876544 446799999999999988 2232 35789999875
No 88
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=57.76 E-value=38 Score=28.41 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=53.9
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCC
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSL 366 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~ 366 (438)
....+.||..+-..-....++++|++|.+.+.. +|+ ...+++||.+=.-. .
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~ip~---------~ 109 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-----DDR---------------VEPLTPLDCVYIAP---------H 109 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-----TTE---------------EEEECTTCEEEECT---------T
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEEECC---------C
Confidence 344566776553333346789999999999887 332 35788888764221 0
Q ss_pred CCCCCccceEEE---cceEEEEEe-----------cHHHHHHHhhhhhHHhHhhhcc
Q 013690 367 SNIPMSTRSVQA---LKNVEAFGL-----------MAHDLKHVFIEHQVASSTEFNS 409 (438)
Q Consensus 367 ~~~~~r~~tv~A---~~~~~l~~L-----------~~~~f~~ll~~p~l~~~~r~~s 409 (438)
....+.+ .+++.++.+ +.+++.++..+|.+++.++..-
T Consensus 110 -----~~H~~~n~~~~~~~~~l~i~~~~~d~p~~p~~~~~~~l~~~~~~~~~~~~~~ 161 (167)
T 3ibm_A 110 -----AWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPAVARRIRTEG 161 (167)
T ss_dssp -----CCEEEEEESSSCCEEEEEEEESSCCCCBCCCHHHHHHHTTSHHHHHHCCCCC
T ss_pred -----CcEEEEeCCCCCCEEEEEEEeCCcCcccCCCHHHHHHHHcChHHHHhhcccc
Confidence 1112333 224444443 3677777777788888887543
No 89
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=57.51 E-value=15 Score=30.26 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred EecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEE
Q 013690 298 VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQ 377 (438)
Q Consensus 298 ~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~ 377 (438)
+...+..|++|+|++|.+.+...+...++.... ...+++|+++--- +... .+-.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~------------~V~l~~Ge~yvVP--------kGve------H~p~ 97 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIE------------LTLMEKGKVYNVP--------AECW------FYSI 97 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEE------------EEECCTTCCEEEC--------TTCE------EEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccc------------eEEecCCCEEEeC--------CCcc------Cccc
Confidence 345566789999999999998843100111111 4678899888632 2211 2556
Q ss_pred EcceEEEEEecHH
Q 013690 378 ALKNVEAFGLMAH 390 (438)
Q Consensus 378 A~~~~~l~~L~~~ 390 (438)
|.+.|.++.+...
T Consensus 98 a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 98 TQKDTKMMYVQDS 110 (140)
T ss_dssp ECTTCEEEEEEES
T ss_pred CCCceEEEEEEeC
Confidence 7788888887655
No 90
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=55.66 E-value=11 Score=32.18 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=36.2
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..........+++++|++|++.+...+ .++.+ ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~--~~~~~--------------~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN--PDGRD--------------TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEE--TTEEE--------------EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEe--CCCcE--------------EEEECCCCEEE
Confidence 455678899876555334679999999999987732 33322 45788888765
No 91
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=55.15 E-value=19 Score=28.21 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=33.0
Q ss_pred cceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-..-.. ..++++|++|.+.+.. .+| + ...+++||.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~----~~~-~--------------~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ----GNG-I--------------VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC----STT-C--------------EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE----CCC-e--------------EEEeCCCCEEE
Confidence 445567888876544344 3679999999999876 233 3 35788998764
No 92
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=53.92 E-value=27 Score=25.78 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=32.7
Q ss_pred cceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-..-.. .+++++|.+|.+.+.. ++. ...+.+||.+=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-----~~~---------------~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-----GEE---------------EALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-----TTE---------------EEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 344567888876433333 3579999999999887 332 35788998764
No 93
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=53.22 E-value=25 Score=26.94 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=43.8
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCC
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 365 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~ 365 (438)
+....+.||..+-.--....++++|++|.+.+.. +|. ...+.+|+.+=.- .
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ip---------~ 86 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-----DGV---------------IKVLTAGDSFFVP---------P 86 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-----TTE---------------EEEECTTCEEEEC---------T
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-----CCE---------------EEEeCCCCEEEEC---------c
Confidence 3445678887754333346789999999999887 332 3578899986422 1
Q ss_pred CCCCCCccceEEEcceEEEEEe
Q 013690 366 LSNIPMSTRSVQALKNVEAFGL 387 (438)
Q Consensus 366 ~~~~~~r~~tv~A~~~~~l~~L 387 (438)
. ....+.+.++++++.+
T Consensus 87 ~-----~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 87 H-----VDHGAVCPTGGILIDT 103 (116)
T ss_dssp T-----CCEEEEESSCEEEEEE
T ss_pred C-----CceeeEeCCCcEEEEE
Confidence 1 2235666677777665
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=53.19 E-value=22 Score=26.83 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=33.3
Q ss_pred cceeeeCCCcEEEec--CCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLE--GDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~--Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-.. -.. ..++++|.+|.+.+.. +++ ...+++|+.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-----DGH---------------TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-----TTE---------------EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 344567888876543 333 5789999999999887 332 35788888764
No 95
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=52.52 E-value=23 Score=27.63 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=34.5
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+++|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-----GEE---------------TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-----TTE---------------EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 4455678888775444456789999999999987 332 35788998764
No 96
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=48.77 E-value=7.2 Score=29.79 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=24.5
Q ss_pred hcceeeeCCCcEEEecCC-CCCeEEEEEecEEEEEe
Q 013690 285 CVKPAFYFKHTHIVLEGD-PIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd-~~~~lyfI~~G~V~v~~ 319 (438)
+.+...++||+-+-..-. .....|+|.+|.+.+..
T Consensus 18 rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~ 53 (98)
T 3lag_A 18 RVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA 53 (98)
T ss_dssp EEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC
T ss_pred EEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe
Confidence 345667899988754433 34468889999999887
No 97
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=47.93 E-value=31 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 302 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 302 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.+.+++|+|++|.++... .++ + ...+++|+.+=
T Consensus 150 Hp~EEiy~VLsG~~e~~v----~~g-~--------------~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHL----RNA-P--------------DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEE----TTS-C--------------CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEE----CCC-C--------------EEecCCCCEEE
Confidence 456799999999999888 323 3 46788988765
No 98
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=45.82 E-value=22 Score=30.50 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.8
Q ss_pred eeeCCCcEEEe---cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 289 AFYFKHTHIVL---EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 289 ~~~~pge~I~~---~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
..+.||...-. .....+++++|++|.+.+.. .+++... ...+++||.+=
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~----~~~~~~~------------~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW----GDKENPK------------EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE----SCTTSCE------------EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE----CCcCCcc------------cEEECCCCEEE
Confidence 34567665431 22344689999999999988 3322212 46899999875
No 99
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=45.74 E-value=18 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.3
Q ss_pred eCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 291 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 291 ~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
..||..-....+ .+++++|++|.+.+.. .+| + ...+++||.+--
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~----~~g-~--------------~~~l~~GD~~~i 99 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVD----PDG-T--------------VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEEC----TTC-C--------------EEEEETTCEEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEE----CCC-e--------------EEEECCCCEEEE
Confidence 455655443322 2789999999999988 444 3 357899998864
No 100
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=44.84 E-value=13 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=32.1
Q ss_pred ceeeeCCCcEEE-ecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 287 KPAFYFKHTHIV-LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 287 ~~~~~~pge~I~-~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
....+.||...- ...+..+++++|++|.+++.. .+|.+ ...+.+||.+=.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~----~~g~~--------------~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET----PEGSV--------------TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE----TTEEE--------------EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe----CCCCE--------------EEEEcCCCEEEe
Confidence 345577877642 222222359999999999988 33212 357889998753
No 101
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.16 E-value=21 Score=30.50 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcc-e
Q 013690 303 PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-N 381 (438)
Q Consensus 303 ~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~-~ 381 (438)
+.++++++++|.+.+... ++++.. -..+++|+.|=-- ... ..+-++.+ .
T Consensus 54 ~~dE~FyvlkG~m~i~v~----d~g~~~------------~v~l~eGE~f~lP--------~gv------pH~P~r~~~e 103 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLW----VDGRRE------------RADLKEGDIFLLP--------PHV------RHSPQRPEAG 103 (174)
T ss_dssp SSCEEEEEEESCEEEEEE----ETTEEE------------EEEECTTCEEEEC--------TTC------CEEEEBCCTT
T ss_pred CCceEEEEEeeEEEEEEE----cCCcee------------eEEECCCCEEEeC--------CCC------CcCccccCCC
Confidence 457899999999999983 322111 4688999988633 111 11344455 6
Q ss_pred EEEEEecHHHHH
Q 013690 382 VEAFGLMAHDLK 393 (438)
Q Consensus 382 ~~l~~L~~~~f~ 393 (438)
+..+.+.+..-.
T Consensus 104 ~~~lviE~~r~~ 115 (174)
T 1yfu_A 104 SACLVIERQRPA 115 (174)
T ss_dssp CEEEEEEECCCT
T ss_pred CEEEEEEeCCCC
Confidence 777776665443
No 102
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=43.55 E-value=27 Score=27.69 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=30.3
Q ss_pred eCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 291 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 291 ~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
..||..-... +..++++.|++|.+.+.. .+|. ...+++||.|--
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~----ddG~---------------~~~l~aGD~~~~ 92 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ----ADAD---------------PVKIGPGSIVSI 92 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE----TTCC---------------CEEECTTEEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe----CCCe---------------EEEECCCCEEEE
Confidence 3455544443 333589999999999988 4543 357899998863
No 103
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=40.51 E-value=29 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 302 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 302 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
...+++++|++|.+.+.. +++.. ...+++||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~-----~~~~~-------------~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC-----EGDTA-------------PRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEE-----TTCSS-------------CEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEE-----CCEEE-------------EEEECCCCEEEE
Confidence 345689999999999988 22220 157889998753
No 104
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=40.27 E-value=35 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=20.3
Q ss_pred eeeCCCcEEEecCCCCCeEEEEEecEEEEEe
Q 013690 289 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
..+.||..+-.--....++++|.+|.+.+..
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 62 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL 62 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE
Confidence 3455665542222235679999999999887
No 105
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=39.91 E-value=22 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 013690 414 KDAARIIQLAWRRRYSSR 431 (438)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~ 431 (438)
.+|+.+||.-|| ++++|
T Consensus 6 iYA~llI~d~~r-~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYK-QSKVK 22 (26)
T ss_dssp HHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHH-HHhcc
Confidence 578999999999 65554
No 106
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=38.76 E-value=27 Score=29.82 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=31.2
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
+....+.||...-.--....+..+|++|++++.. .+|. ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l----d~ge---------------~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL----DDGA---------------KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC----GGGC---------------EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE----CCCe---------------EEEECCCCEE
Confidence 3344566766432222334568899999999988 2232 3578999998
No 107
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=38.31 E-value=46 Score=29.39 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccC
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDR 364 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~ 364 (438)
.+....+.||+.+-..-.+.+.+++|++|.+++.. +|+ ...+.+||.+=--
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~g~---------------~~~l~~Gd~i~ip--------- 204 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-----DGK---------------PFIVKKGESAVLP--------- 204 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-----TTE---------------EEEEETTEEEEEC---------
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-----CCE---------------EEEECCCCEEEEC---------
Confidence 34556789999876555556789999999999988 332 3578899986532
Q ss_pred CCCCCCCccceEEE-cceEEEEE
Q 013690 365 SLSNIPMSTRSVQA-LKNVEAFG 386 (438)
Q Consensus 365 ~~~~~~~r~~tv~A-~~~~~l~~ 386 (438)
.. ....+.+ .++++++.
T Consensus 205 ~~-----~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 205 AN-----IPHAVEAETENFKMLL 222 (227)
T ss_dssp TT-----SCEEEECCSSCEEEEE
T ss_pred CC-----CcEEEEeCCCCEEEEE
Confidence 11 2236777 77777654
No 108
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=37.96 E-value=22 Score=30.39 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHhhcce----eeeCCCcEEEe-cC----------CCCCeEEEEEecEEEEEeeecccCC---CcccccccCcccc
Q 013690 278 VLDALCDCVKP----AFYFKHTHIVL-EG----------DPIYEMLFIVQGKMWIYTSKERTNG---SANTSHSRDNSKF 339 (438)
Q Consensus 278 ~l~~l~~~l~~----~~~~pge~I~~-~G----------d~~~~lyfI~~G~V~v~~~~~~~~g---~~~~~~~~~~~~~ 339 (438)
-+++....++| +....+++++. -| ++.++++++++|.+.+...+ +| .+..
T Consensus 13 wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d---~g~~~~~~~--------- 80 (176)
T 1zvf_A 13 WLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVD---ETDAEPKFI--------- 80 (176)
T ss_dssp HHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEE---CSSSSCEEE---------
T ss_pred HHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEc---CCCccccee---------
Confidence 34555666666 44434665542 22 33468999999999999843 23 1111
Q ss_pred cccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHH
Q 013690 340 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLK 393 (438)
Q Consensus 340 ~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~ 393 (438)
-..+++|+.|=-- .. -..+-++..++..+.+.+..-.
T Consensus 81 ---dv~i~eGdmfllP--------~g------vpHsP~r~~e~v~lviErkR~~ 117 (176)
T 1zvf_A 81 ---DIIINEGDSYLLP--------GN------VPHSPVRFADTVGIVVEQDRPG 117 (176)
T ss_dssp ---EEEECTTEEEEEC--------TT------CCEEEEECTTCEEEEEEECCCS
T ss_pred ---eEEECCCCEEEcC--------CC------CCcCCcccCCcEEEEEEecCCC
Confidence 4688999988633 11 1113444567777777665543
No 109
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.42 E-value=42 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=31.8
Q ss_pred ceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||..+-.--.. ..++++|++|.+.+.. ++. ...+.+||.+=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-----NGK---------------DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-----TTE---------------EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE-----CCE---------------EEEeCCCcEEE
Confidence 34567888765432222 3689999999999887 332 35788888764
No 110
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.19 E-value=58 Score=26.43 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.7
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||..+-..-....++++|.+|.+.+.. ++.. ...+.+|+.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-----~~~~--------------~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-----RGKP--------------ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE-----TTSC--------------CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE-----CCEE--------------EEEECCCCEEE
Confidence 345567777653322334689999999999887 3322 14678888775
No 111
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=36.46 E-value=28 Score=26.30 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=40.0
Q ss_pred eCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCC
Q 013690 291 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIP 370 (438)
Q Consensus 291 ~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~ 370 (438)
..||+......+..+++++|++|.+.+.. +|++ ...+++||.+=-- ..
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~-----~~~~--------------~~~l~~Gd~~~ip---------~~---- 82 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF-----ADGG--------------SMTIREGEMAVVP---------KS---- 82 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE-----TTSC--------------EEEECTTEEEEEC---------TT----
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE-----CCCc--------------EEEECCCCEEEEC---------CC----
Confidence 34555332333323789999999999888 3312 3578899987422 11
Q ss_pred CccceEEEcceEEEEEecHHHH
Q 013690 371 MSTRSVQALKNVEAFGLMAHDL 392 (438)
Q Consensus 371 ~r~~tv~A~~~~~l~~L~~~~f 392 (438)
....+.+.+++.++.++....
T Consensus 83 -~~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 83 -VSHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp -CCEEEEEEEEEEEEEEECC--
T ss_pred -CcEeeEeCCCeEEEEEECCCc
Confidence 112445556788887765543
No 112
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=36.17 E-value=48 Score=25.96 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=22.3
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEe
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
...+.||..+-.--....++++|.+|.+.+..
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 83 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK 83 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE
Confidence 34456666553333346789999999999887
No 113
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=35.88 E-value=35 Score=27.53 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=30.8
Q ss_pred eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 289 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
..+.||..-.. ...+++++|++|.+.+.. +|. ...+++||.+--
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~-----~g~---------------~~~l~~GD~i~~ 105 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH-----EGE---------------TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE-----TTE---------------EEEEETTCEEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE-----CCE---------------EEEECCCcEEEE
Confidence 44677743222 246799999999999988 332 357999998863
No 114
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=35.37 E-value=49 Score=25.75 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=30.6
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
...+.||...-..-....++++|.+|.+.+.. +|+ ...+++|+.+=
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-----~~~---------------~~~l~~Gd~~~ 83 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-----NDE---------------DFPVTKGDLII 83 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE-----TTE---------------EEEEETTCEEE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE-----CCE---------------EEEECCCcEEE
Confidence 34556776433222345689999999999888 332 35788888765
No 115
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=34.81 E-value=62 Score=27.39 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=31.7
Q ss_pred eeeeCCCcEEEec--CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 288 PAFYFKHTHIVLE--GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 288 ~~~~~pge~I~~~--Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
...+.||...-.. ....+++++|++|.+.+.. +| + ...+.+||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-----~~-~--------------~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-----DE-Q--------------WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-----TT-E--------------EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-----CC-E--------------EEEeCCCCEEE
Confidence 3456788766532 2334689999999999887 33 2 35789999764
No 116
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=34.20 E-value=35 Score=28.42 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=31.2
Q ss_pred ceeeeCCCcEEE--ecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIV--LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~--~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||.... ...+..+++++|++|++.+.. +++ ...+++|+.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-----~~~---------------~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-----DQG---------------EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-----TTE---------------EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 345567777542 222333689999999999988 332 35788888765
No 117
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=34.10 E-value=32 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.029 Sum_probs=30.0
Q ss_pred eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 289 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
..+.||..+-..-....++++|++|++++.. +|+ ...+++||.+=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-----~g~---------------~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV-----GRA---------------VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE-----TTE---------------EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 3456666553333345689999999999877 332 35778888764
No 118
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=33.91 E-value=34 Score=28.39 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=29.8
Q ss_pred eeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 289 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 289 ~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
..+.||..+-..-....++++|++|++++.. +|+ ...+.+||.+=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-----~g~---------------~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-----GET---------------ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-----TTE---------------EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 3456666543333345689999999999887 332 35778888764
No 119
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=33.89 E-value=13 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=15.2
Q ss_pred HHHHhhccHHHHHHHHHH
Q 013690 242 ESSLSILPKELRRNIKRE 259 (438)
Q Consensus 242 ~~il~~Lp~~Lr~ei~~~ 259 (438)
.++++.||..++.|++..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 689999999999988643
No 120
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=33.71 E-value=32 Score=28.36 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=31.0
Q ss_pred ceeeeCCCcE-E-EecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 287 KPAFYFKHTH-I-VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 287 ~~~~~~pge~-I-~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
....+.||.. . .......+++++|++|.+.+.. +|+ ...+++||.+
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-----~~~---------------~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-----END---------------QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-----TTE---------------EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-----CCE---------------EEEeCCCCEE
Confidence 3456778773 2 1222346789999999999987 332 3578888886
No 121
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.67 E-value=45 Score=29.86 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=36.6
Q ss_pred hcceeeeCCCcEEEe-cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 285 CVKPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 285 ~l~~~~~~pge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
.+....+.||..+-. +-...++.++|++|++.+.. +|. ...+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-----~~~---------------~~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-----EEN---------------YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-----TTE---------------EEEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-----CCE---------------EEEcCCCCEEEE
Confidence 455667889987653 34456789999999999888 332 357899998653
No 122
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=32.75 E-value=59 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHhhcceeeeCCCcEEEecCC-CCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 279 LDALCDCVKPAFYFKHTHIVLEGD-PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 279 l~~l~~~l~~~~~~pge~I~~~Gd-~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+..+-..+....+.||..+-.-=. .++++++|++|.+.+...+ .+|++.. ...+.+||.|=
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~--~~G~~~~------------~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVD--SNGNRVY------------DEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEe--CCCCEEE------------eEEEcCCcEEE
Confidence 444555677778899986643323 3679999999999988743 4444422 34588888763
No 123
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=32.39 E-value=65 Score=32.33 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=41.2
Q ss_pred HHHHHhhcceeeeCCCcEEEecC-CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 279 LDALCDCVKPAFYFKHTHIVLEG-DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 279 l~~l~~~l~~~~~~pge~I~~~G-d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+..+-..+....+.||-.+-.-= ..++++++|++|.+.+...+ .+|+... ...+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~--~~g~~~~------------~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVN--AQGNAVF------------DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC--TTSCEEE------------EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEc--CCCCEEE------------eEEEcCCCEEE
Confidence 44555667777889998664332 33679999999999988743 3444321 25688998874
No 124
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=31.59 E-value=68 Score=28.54 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=26.8
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEe
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
.+....+.||..+-.--....++++|++|.+++..
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~ 69 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV 69 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE
Confidence 34445688998876555557789999999999887
No 125
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=31.55 E-value=86 Score=23.23 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=31.1
Q ss_pred ceeeeCCCcEEEecCCC-CCeE-EEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVLEGDP-IYEM-LFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~-~~~l-yfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||..+-..-.. ..++ ++|.+|.+.+.. .+|. ...+.+||.+=
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~----~~~~---------------~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG----DGDA---------------VIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC----GGGC---------------EEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe----CCCE---------------EEEECCCCEEE
Confidence 33456788776443333 2466 899999999877 2222 35788998764
No 126
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=31.50 E-value=62 Score=32.31 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=37.7
Q ss_pred HhhcceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 283 CDCVKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 283 ~~~l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
-..+....+.||..+-.-=.+ ++++++|++|.+.+...+ .+|.+.. ...+.+||.|=
T Consensus 337 ~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~--~~G~~~~------------~~~l~~GDv~v 394 (476)
T 1fxz_A 337 RLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVN--CNGERVF------------DGELQEGRVLI 394 (476)
T ss_dssp TCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEEETTCEEE
T ss_pred cceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEe--cCCCEEe------------eeEEcCCCEEE
Confidence 345566778898876433233 679999999999988743 4444322 24578888763
No 127
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=31.00 E-value=37 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=25.2
Q ss_pred CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 302 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 302 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
..++.++||++|.+++.. +|. ...+.+|++|=-
T Consensus 108 h~gEE~~yVLeG~v~vtl-----~g~---------------~~~L~~Gds~~i 140 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV-----CKN---------------KFLSVKGSTFQI 140 (166)
T ss_dssp CSEEEEEEEEESEEEEEE-----TTE---------------EEEEETTCEEEE
T ss_pred CCceEEEEEEEeEEEEEE-----CCE---------------EEEEcCCCEEEE
Confidence 345689999999999998 332 357899998763
No 128
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=30.92 E-value=1.2e+02 Score=21.95 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=33.8
Q ss_pred CeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEE
Q 013690 305 YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEA 384 (438)
Q Consensus 305 ~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l 384 (438)
.++++|.+|.+.+.. ++. ...+.+|+.+=-- +. ....+.+.+++.+
T Consensus 51 ~e~~~v~~G~~~~~~-----~~~---------------~~~l~~Gd~~~ip---------~~-----~~H~~~~~~~~~~ 96 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF-----RDQ---------------NITLQAGEMYVIP---------KG-----VEHKPMAKEECKI 96 (102)
T ss_dssp CEEEEEEESEEEEEC-----SSC---------------EEEEETTEEEEEC---------TT-----CCBEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE-----CCE---------------EEEEcCCCEEEEC---------CC-----CeEeeEcCCCCEE
Confidence 789999999999877 332 3577899876422 11 1225566678888
Q ss_pred EEec
Q 013690 385 FGLM 388 (438)
Q Consensus 385 ~~L~ 388 (438)
+.++
T Consensus 97 l~i~ 100 (102)
T 3d82_A 97 MIIE 100 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 129
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=30.88 E-value=40 Score=33.38 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=28.2
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEee
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 320 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~ 320 (438)
.+....+.||..+-......+++++|++|++.+...
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v 122 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLV 122 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEE
Confidence 455677899988766655577999999999988763
No 130
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=30.33 E-value=42 Score=32.92 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=28.7
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEee
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 320 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~ 320 (438)
.+....+.||..+.......+++++|++|++.+...
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v 85 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLV 85 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEE
Confidence 456778899997766655677999999999998764
No 131
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.56 E-value=29 Score=33.83 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=34.0
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||+.+-..-....++|||++|+-.... .+|++ ..+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~----v~G~~---------------~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI----VDGHK---------------VELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE----ETTEE---------------EEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE----ECCEE---------------EEEcCCCEEE
Confidence 566788888875544455689999999876645 34432 4678888875
No 132
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=29.36 E-value=46 Score=32.84 Aligned_cols=37 Identities=11% Similarity=-0.052 Sum_probs=29.5
Q ss_pred hhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEee
Q 013690 284 DCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 320 (438)
Q Consensus 284 ~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~ 320 (438)
..+....+.||..+-......+++++|++|++.+...
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v 97 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLV 97 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEE
Confidence 3466778899998877655577999999999988773
No 133
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=29.27 E-value=96 Score=26.61 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=34.4
Q ss_pred cceeeeCCCcEEEec-CCCCCeEEEEEecEEEEEeeecccC--CCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYTSKERTN--GSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||...-.- ....+++++|++|++.+...+ .+ |++.. ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~--~~~~~~~~~------------~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILG--SLDSGNKLY------------SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEEC--CGGGTTCEE------------EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEc--CCCCCCeEE------------EEEECCCCEEE
Confidence 445677888865433 333579999999999987732 11 12211 35788888775
No 134
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=29.11 E-value=64 Score=29.52 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=37.4
Q ss_pred hhcceeeeCCCcEEEe-cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 284 DCVKPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 284 ~~l~~~~~~pge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
..+....+.||..+-. +-...++.++|++|+..+.. +|. ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~-----~~~---------------~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL-----NQD---------------WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE-----TTE---------------EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 3566778999999864 44445578999999999877 432 35788999864
No 135
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=28.96 E-value=80 Score=29.78 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred ceeeeCCCcEEEec-CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||...-.. ....+++++|++|++.+...+ .+|... ...+++||.+=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~--~~g~~~-------------~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTS--PEGKVE-------------IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEEC--TTSCEE-------------EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEe--CCCcEE-------------EEEEcCCCEEE
Confidence 34557788865433 333789999999999988843 233221 45788888764
No 136
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=28.71 E-value=51 Score=25.63 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=29.4
Q ss_pred ceeeeCCCcEEE--ecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIV--LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~--~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
....+.||..+- ...+..+.+|+|.+|.+.+.. ++. ...+.+||.+=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-----DGE---------------KIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-----TTE---------------EEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 334567776542 222333457779999999887 332 35678888764
No 137
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.41 E-value=84 Score=28.04 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.8
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
...+.||...-..- .+++.+|++|++++.. +|. ...+++||++=
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV-----GGE---------------TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC-----SSC---------------EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE-----CCE---------------EEEECCCCEEE
Confidence 34567887654432 6789999999999988 332 35788999765
No 138
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=27.58 E-value=91 Score=31.53 Aligned_cols=62 Identities=13% Similarity=0.302 Sum_probs=43.9
Q ss_pred HHHHHHhhcceeeeCCCcEEEec-CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 278 VLDALCDCVKPAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 278 ~l~~l~~~l~~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
.+..+-..+....+.||-++-.- .-.++++.+|++|.+.+...+ .+|+... ...+.+||.|=
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~--~~G~~v~------------~~~L~~GDV~v 450 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVN--ENGDAIL------------DQEVQQGQLFI 450 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC--TTSCEEE------------EEEEETTCEEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEe--CCCcEEE------------EEEecCCeEEE
Confidence 34555556777889999887543 233689999999999988754 4554432 46788999874
No 139
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=27.06 E-value=54 Score=27.20 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 303 PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 303 ~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
..+++++|++|++++.. +|. ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-----~g~---------------~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-----DGR---------------KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-----TTE---------------EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-----CCE---------------EEEEcCCCEEE
Confidence 45689999999999987 332 35789999875
No 140
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.50 E-value=46 Score=32.38 Aligned_cols=76 Identities=7% Similarity=0.024 Sum_probs=48.5
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCC
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSL 366 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~ 366 (438)
....+.||+..-..-...+.+|+|++|+..+.. +|. ...+++||+|=.-.-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-----~ge---------------~~~~~~GD~~~iP~g--------- 347 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-----GGK---------------RFDWSEHDIFCVPAW--------- 347 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-----TTE---------------EEEECTTCEEEECTT---------
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-----CCE---------------EEEEeCCCEEEECCC---------
Confidence 456778888775544556789999999986555 442 357889998764311
Q ss_pred CCCCCccceEEE---cceEEEEEecHHHHHHHh
Q 013690 367 SNIPMSTRSVQA---LKNVEAFGLMAHDLKHVF 396 (438)
Q Consensus 367 ~~~~~r~~tv~A---~~~~~l~~L~~~~f~~ll 396 (438)
....+.. .+++.++.++-.-+.+-|
T Consensus 348 -----~~H~~~N~g~~e~~~ll~i~D~Pl~~~L 375 (394)
T 3bu7_A 348 -----TWHEHCNTQERDDACLFSFNDFPVMEKL 375 (394)
T ss_dssp -----CCEEEEECCSSCCEEEEEEESHHHHHHT
T ss_pred -----CeEEeEeCCCCCCeEEEEeeCHHHHHHh
Confidence 1113333 357888888765555544
No 141
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=26.45 E-value=58 Score=29.82 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=41.0
Q ss_pred eeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCC
Q 013690 288 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLS 367 (438)
Q Consensus 288 ~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~ 367 (438)
...+.||..--......+++.||++|++++.. .+|+ ...+++|+++=.- +.
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l----~~g~---------------~~~L~~Gds~y~p---------~~- 124 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN----TSSS---------------SKKLTVDSYAYLP---------PN- 124 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC------CC---------------CEEECTTEEEEEC---------TT-
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE----CCCc---------------EEEEcCCCEEEEC---------CC-
Confidence 45577877632223345689999999999988 2133 2478888876532 11
Q ss_pred CCCCccceEEEcceEEEEEec
Q 013690 368 NIPMSTRSVQALKNVEAFGLM 388 (438)
Q Consensus 368 ~~~~r~~tv~A~~~~~l~~L~ 388 (438)
...+++..+.++++.+.
T Consensus 125 ----~~H~~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 125 ----FHHSLDCVESATLVVFE 141 (266)
T ss_dssp ----CCCEEEESSCEEEEEEE
T ss_pred ----CCEEEEeCCCEEEEEEE
Confidence 11244445677777664
No 142
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.15 E-value=60 Score=26.67 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=22.2
Q ss_pred ceeeeCCCcEEEecCCCCCeEEEEEecEEEEEe
Q 013690 287 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 287 ~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~ 319 (438)
....+.||..+-..-....++++|++|.+.+..
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~ 76 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM 76 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEE
Confidence 344567776542222234679999999999988
No 143
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=26.07 E-value=96 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=21.8
Q ss_pred eeeeCCCcEEEec-CCCCCeEEEEEecEEEEEe
Q 013690 288 PAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYT 319 (438)
Q Consensus 288 ~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~ 319 (438)
...+.||..+-.. ....+++++|++|.+.+..
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i 79 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQM 79 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEE
Confidence 3456777654322 2224589999999999988
No 144
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.75 E-value=95 Score=29.59 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=35.6
Q ss_pred cceeeeCCCcEEEecCCCC-CeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPI-YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||...-..-... +++++|++|++.+...+ .+|... ...+++||.|=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~--~~g~~~-------------~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFA--SDGHAR-------------TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEE--ETTEEE-------------EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEc--CCCcEE-------------EEEEcCCCEEE
Confidence 4445678888765433344 79999999999988732 344211 46788999875
No 145
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=25.36 E-value=75 Score=28.86 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=33.8
Q ss_pred cceeeeCCCcEEEe-cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-. .-...+++++|++|++.+.. +++ ...+++||.+=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-----~~~---------------~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-----DNE---------------WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-----TTE---------------EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEE
Confidence 44456788876633 23356789999999999888 332 35788999875
No 146
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.17 E-value=88 Score=29.87 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=35.0
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||...-..-....++++|++|.+++...+ .+|+.. ...+++||.+=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~g~~~-------------~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVD--EKGRSF-------------IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEEC--TTSCEE-------------EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEe--CCCcEE-------------EEEeCCCCEEE
Confidence 344567888865433333789999999999998843 234321 24788998764
No 147
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=24.94 E-value=48 Score=21.22 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 013690 414 KDAARIIQLAWRRRYSSRN 432 (438)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (438)
..++..||..|| -+..|+
T Consensus 28 ~~aai~IQ~~~R-g~~~Rk 45 (48)
T 1n2d_C 28 VNCATLLQAAYR-GHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHH-hHHHHH
Confidence 348999999999 666554
No 148
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=24.77 E-value=1.2e+02 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=35.5
Q ss_pred cceeeeCCCcEEEecCCC-CCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-..-.. .+++++|++|++.+...+ .+|.. . ...+++||.|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~--~~g~~-~------------~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFA--SEGKA-S------------VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEEC--STTCE-E------------EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEc--CCCcE-E------------EEEECCCCEEE
Confidence 445678888876543333 379999999999987632 23331 1 35788999875
No 149
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=24.40 E-value=68 Score=18.04 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 013690 414 KDAARIIQLAWRRRYSSRNLL 434 (438)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (438)
.+||..|+.-||.-+.+|.+.
T Consensus 2 vYAa~mI~e~yrq~K~~r~q~ 22 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQRX 22 (26)
T ss_pred hhHHHHHHHHHHHHHhhhhhc
Confidence 368889999999666677654
No 150
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=24.37 E-value=50 Score=30.43 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcc
Q 013690 301 GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK 380 (438)
Q Consensus 301 Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~ 380 (438)
.+..+++|++++|...+...+ +|+. . -..+++|++|=-- ... ..+=++-+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d---~g~~-~------------~V~i~eGemfllP--------~gv------~HsP~r~~ 97 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLE---QGKH-R------------DVVIRQGEIFLLP--------ARV------PHSPQRFA 97 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEE---TTEE-E------------EEEECTTEEEEEC--------TTC------CEEEEECT
T ss_pred CCCCCeEEEEEeCeEEEEEEe---CCce-e------------eEEECCCeEEEeC--------CCC------CcCCcccC
Confidence 345679999999999999842 2422 1 3678999888532 111 12445567
Q ss_pred eEEEEEecHHHHH
Q 013690 381 NVEAFGLMAHDLK 393 (438)
Q Consensus 381 ~~~l~~L~~~~f~ 393 (438)
+|..+.|.+..-.
T Consensus 98 et~gLviE~~R~~ 110 (286)
T 2qnk_A 98 NTVGLVVERRRLE 110 (286)
T ss_dssp TCEEEEEEECCCT
T ss_pred CeEEEEEeecCCC
Confidence 8888888765543
No 151
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.98 E-value=83 Score=27.92 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=34.2
Q ss_pred eeeeCC-CcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeechh
Q 013690 288 PAFYFK-HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 355 (438)
Q Consensus 288 ~~~~~p-ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe~ 355 (438)
...+.| |..+-..-....++++|++|.+++.. +|+ ...+.+||.+-.-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i-----~~~---------------~~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV-----EGC---------------TVEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE-----TTE---------------EEEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE-----CCE---------------EEEECCCCEEEEC
Confidence 345788 77765444456789999999999888 332 3568899987643
No 152
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.08 E-value=1.1e+02 Score=28.29 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=32.5
Q ss_pred ceeeeCCCcEEEe-cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 287 KPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 287 ~~~~~~pge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
......||...-. ..+..+++++|++|.+++.. +|+ ...+++||++=
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-----~~~---------------~~~l~~Gd~~~ 96 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-----DGE---------------RYLLISGDYAN 96 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-----TTE---------------EEEECTTCEEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-----CCE---------------EEEECCCCEEE
Confidence 3455788876633 33337899999999999887 332 35778888764
No 153
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=22.96 E-value=30 Score=18.99 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 013690 414 KDAARIIQLAWRRRYSSR 431 (438)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~ 431 (438)
.+|+..||.-|| +.++|
T Consensus 5 iYAallI~d~~r-~~k~~ 21 (23)
T 3dve_B 5 VYAALMIFDFYK-QNKTS 21 (26)
T ss_dssp HHHHHHHHHHHH-HTCCC
T ss_pred HHHHHHHHHHHH-HHhhc
Confidence 578999999999 54443
No 154
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=22.45 E-value=76 Score=31.10 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=36.7
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
+....+.||-.+...--.++++++|++|.+.+-..+ +++.. ...+.+||.|
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~--~~~~~--------------~~~l~~GDv~ 96 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVAN--GNNRK--------------SFNLDEGHAL 96 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEEC--SSCEE--------------EEEEETTEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEe--cCCEE--------------EEEecCCCEE
Confidence 444567899888877656788999999999887743 33322 4677888877
No 155
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=22.45 E-value=1.3e+02 Score=29.86 Aligned_cols=61 Identities=7% Similarity=0.117 Sum_probs=42.5
Q ss_pred HHHHHhhcceeeeCCCcEEEecC-CCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 279 LDALCDCVKPAFYFKHTHIVLEG-DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 279 l~~l~~~l~~~~~~pge~I~~~G-d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+..+-..+....+.||-+...-= -.++++++|++|.+.+...+ .+|.... -..+.+||.|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~--~~g~~~~------------~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVD--NFGQSVF------------DGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC--TTSCEEE------------EEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEe--CCCCEEE------------eeEEeCCcEEE
Confidence 55555667777888988765432 33679999999999988854 4554422 24688999874
No 156
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=22.28 E-value=79 Score=19.34 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 013690 413 VKDAARIIQLAWRRRYSSRNL 433 (438)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (438)
..+|.-+||.-+| ++++|..
T Consensus 10 KfYatfLIQdyFR-kfkkrke 29 (37)
T 2be6_D 10 KFYATFLIQEYFR-KFKKRKE 29 (37)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHH
Confidence 3567889999999 7777654
No 157
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=22.27 E-value=1.4e+02 Score=25.41 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=29.6
Q ss_pred ccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEE
Q 013690 266 KNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLF 309 (438)
Q Consensus 266 ~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyf 309 (438)
-+.|.|.+++.....+++.. .+||+|+++...++++-+
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 45799999998877776666 369999999887776544
No 158
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=21.76 E-value=61 Score=31.18 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred cceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 286 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 286 l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
+....+.||+.+-..-...+++|||++|+-.... .+|.+ ..+++||+|
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~----vdG~~---------------~~~~~GD~v 152 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTV----VNGDP---------------VRMSRGDLL 152 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEE----ETTEE---------------EEEETTCEE
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEE----ECCEE---------------EEEeCCCEE
No 159
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.49 E-value=90 Score=28.02 Aligned_cols=48 Identities=8% Similarity=-0.044 Sum_probs=33.5
Q ss_pred cceeeeCCCcEEEec-CCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 286 VKPAFYFKHTHIVLE-GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 286 l~~~~~~pge~I~~~-Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
+....+.||..+-.. ....+++++|++|++++.. +|. ...+++||.+=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-----~~~---------------~~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL-----DNN---------------WIPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES-----SSC---------------EEEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE-----CCE---------------EEEeCCCCEEE
Confidence 455668888765322 2235689999999999887 332 35788999865
No 160
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=21.43 E-value=50 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 013690 413 VKDAARIIQLAWRRRYSSRN 432 (438)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (438)
..+|+..||.-|| ++++|+
T Consensus 62 KiYA~llI~d~~r-~~k~r~ 80 (81)
T 3g43_E 62 KFYATFLIQEYFR-KFKKRE 80 (81)
T ss_dssp CHHHHHHHHHHHH-HHHTC-
T ss_pred HHHHHHHHHHHHH-HHHhcc
Confidence 3456666666666 555554
No 161
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.35 E-value=43 Score=23.87 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHhhccHHHHHHHHHH
Q 013690 244 SLSILPKELRRNIKRE 259 (438)
Q Consensus 244 il~~Lp~~Lr~ei~~~ 259 (438)
.|+.||++||.+|..-
T Consensus 8 wL~~LP~~Lq~kV~aI 23 (70)
T 2lh0_A 8 FLDELPESLSRKIGTV 23 (70)
T ss_dssp GGGGSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 7899999999998754
No 162
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=20.82 E-value=73 Score=29.15 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=30.6
Q ss_pred eeeeCCCcEEEe--cCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeec
Q 013690 288 PAFYFKHTHIVL--EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353 (438)
Q Consensus 288 ~~~~~pge~I~~--~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FG 353 (438)
...+.||...-. .....+++++|++|++++.. +|+ ...+++||++=
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v-----~g~---------------~~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL-----QGQ---------------VHAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE-----SSC---------------EEEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE-----CCE---------------EEEECCCCEEE
Confidence 345667766521 12335789999999999988 332 35788888764
No 163
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.59 E-value=84 Score=30.54 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=37.8
Q ss_pred hcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCe
Q 013690 285 CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 351 (438)
Q Consensus 285 ~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~ 351 (438)
.+....+.||..+...-...+++++|++|+..+...+ +++.+ ...+.+||.
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~--~~~~~--------------~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVK--PDDRR--------------EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEE--TTTEE--------------EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEe--CCCcE--------------EEEECCCCc
Confidence 4667788999987666566789999999999988754 34332 357778887
Done!