Query 013691
Match_columns 438
No_of_seqs 305 out of 2075
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 2.5E-46 8.6E-51 372.1 26.1 293 89-421 6-302 (320)
2 3v5u_A Uncharacterized membran 99.8 9.2E-19 3.1E-23 173.9 13.8 144 276-424 4-147 (320)
3 2oar_A Large-conductance mecha 26.7 31 0.0011 30.4 2.3 33 333-365 31-70 (174)
4 2kdc_A Diacylglycerol kinase; 14.8 3E+02 0.01 22.5 5.8 43 77-119 41-84 (121)
5 3rko_M NADH-quinone oxidoreduc 9.1 1.3E+03 0.046 23.0 10.3 29 277-305 467-495 (509)
6 3hzq_A Large-conductance mecha 8.8 2.1E+02 0.0071 23.3 2.8 29 335-363 30-65 (114)
7 3gia_A Uncharacterized protein 7.3 1.2E+03 0.042 22.0 8.5 20 232-251 407-426 (444)
8 3lae_A UPF0053 protein HI0107; 7.3 1.5E+02 0.005 22.1 1.2 24 111-134 20-51 (81)
9 3llb_A Uncharacterized protein 6.8 1.6E+02 0.0053 22.0 1.1 16 119-134 36-51 (83)
10 2fvh_A Urease gamma subunit; p 6.5 9.2E+02 0.032 19.6 5.6 46 369-414 18-64 (120)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=2.5e-46 Score=372.12 Aligned_cols=293 Identities=18% Similarity=0.164 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Ccccchhhhhcc-chhHHHHHHHHhhCCCccchhhhhhhHHHHHHHHH
Q 013691 89 PWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLLV 165 (438)
Q Consensus 89 ~~vF~~~~laiipla~~l~~~~e~la~~~G--~~vggll~a~~g-n~pElivsi~Al~~g~~~iv~gsllGSil~nllLv 165 (438)
...|+.+++.++++++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 346788999999999999999999999999 899999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhHHHHHHHHHHHHHHH
Q 013691 166 LGTSLFCGGIANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQ 245 (438)
Q Consensus 166 lG~~~l~gg~~~~~~~~~~~~~~a~~~~~ll~lav~~lllP~~~~~~~~~~~~~~~~~~~lsr~~siiLl~~Y~~yl~f~ 245 (438)
+|+|.++++.+ .++.+. ++. .+++++.+.+ ++. ..| . ++|++|++|+..|+.|++++
T Consensus 86 lG~~~li~p~~---v~~~~~-~d~----~~~l~~~~~l-~~~-----------~~~--g-is~~~g~~Ll~~Y~~yl~~~ 142 (320)
T 3v5u_A 86 LGLSAIISPII---VDKNLQ-KNI----LVYLLFVIFA-AVI-----------GID--G-FSWIDGVVLLILFIIYLRWT 142 (320)
T ss_dssp HHHHHHHSCBC---CCHHHH-HHH----HHHHHHHHHH-HHH-----------TTT--C-BCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccc---ccHHHH-HHH----HHHHHHHHHH-HHH-----------HHc--c-cHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 233332 221 2223332221 111 123 3 89999999999999999999
Q ss_pred HhhhhhhccccCCCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeeeehhcccchh
Q 013691 246 LWTHREFFEAQEDSEDDDDVTEETPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAA 325 (438)
Q Consensus 246 l~th~~~f~~~~~~~~e~~~~~e~~~~~~~~~i~~L~i~~vli~i~a~~lV~si~~i~~~~gis~~fiGlillpi~ts~p 325 (438)
+++|++ ++|+ | +++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|++++|++||+|
T Consensus 143 ~~~~~~-----~~~~-~----~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslP 212 (320)
T 3v5u_A 143 VKNGSA-----EIEE-N----NDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLP 212 (320)
T ss_dssp HHHTBC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHH
T ss_pred HHhccc-----cccc-c----cccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccH
Confidence 999874 1111 1 12234567888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCcchHHHHHhHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHHHHHHHHhCCccchHHH
Q 013691 326 EHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKG 405 (438)
Q Consensus 326 E~~~ai~~a~kg~~dlaig~~iGS~i~~~l~vipl~vli~~~~g~~~~l~f~~~~~~~l~~svll~~~~~~~g~~~~~~G 405 (438)
|+++++.+++||+.|+++|+++|||+||.++++|+..++. |++++ .+|...+....++.....+|||.+|+||
T Consensus 213 E~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG 285 (320)
T 3v5u_A 213 ELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQG 285 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHH
Confidence 9999999999999999999999999999999999998875 44443 5565444433333334678999999999
Q ss_pred HHHHHHHHH-HHHHHHh
Q 013691 406 FVLLLCYFV-IGACFFV 421 (438)
Q Consensus 406 ~~Ll~~Y~i-~~~~~~~ 421 (438)
.+++++|++ |+...+.
T Consensus 286 ~~ll~~Y~~~y~~~~~~ 302 (320)
T 3v5u_A 286 ILFLALYIIAIASLRMG 302 (320)
T ss_dssp HHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999999 9876664
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.78 E-value=9.2e-19 Score=173.86 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeeeehhcccchhhHHHHHHHHHhCCCcchHHHHHhHHHHHHH
Q 013691 276 SGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAV 355 (438)
Q Consensus 276 ~~i~~L~i~~vli~i~a~~lV~si~~i~~~~gis~~fiGlillpi~ts~pE~~~ai~~a~kg~~dlaig~~iGS~i~~~l 355 (438)
..+.+++++.+++..++++++++.+.+++++|+|+.++|++++|+|||+||.++++.++++|+.|+++||++|||++|.+
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCcccccccchHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHhccC
Q 013691 356 FVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLCYFVIGACFFVSNR 424 (438)
Q Consensus 356 ~vipl~vli~~~~g~~~~l~f~~~~~~~l~~svll~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~~ 424 (438)
+++|+..++++. +++..+ ..+...+.++.++......|| .+|++|.+|++.|+.|....+....
T Consensus 84 lvlG~~~li~p~---~v~~~~-~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~ 147 (320)
T 3v5u_A 84 LVLGLSAIISPI---IVDKNL-QKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGS 147 (320)
T ss_dssp THHHHHHHHSCB---CCCHHH-HHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHccc---cccHHH-HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998743 221111 123333334444444556788 9999999999999999988776543
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=26.69 E-value=31 Score=30.37 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=22.3
Q ss_pred HHHhCC-CcchHHHHHhHHHH---HHH---HHHHHHHHHH
Q 013691 333 FAFKNK-LDISLGVALGSATQ---IAV---FVVPLCVIIS 365 (438)
Q Consensus 333 ~a~kg~-~dlaig~~iGS~i~---~~l---~vipl~vli~ 365 (438)
++.||+ +|+|+|++||++.. +++ ++.|++.+++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~G 70 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIG 70 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhC
Confidence 455654 69999999999852 233 3678776553
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=14.76 E-value=3e+02 Score=22.48 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013691 77 LAIIGQCFGFAE-PWVFALSLLGLTPLAERVSFLTEQIAFYTGP 119 (438)
Q Consensus 77 ~~~~~~~~~~~~-~~vF~~~~laiipla~~l~~~~e~la~~~G~ 119 (438)
....+-+++.+. .|.+.+..+.++..+|.+..+.|.+.++.++
T Consensus 41 ~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 41 AVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444555544 5667777778888999999999999988773
No 5
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=9.14 E-value=1.3e+03 Score=23.00 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013691 277 GFAWLVGMTAIIALLSEFVVGTIEDASNS 305 (438)
Q Consensus 277 ~i~~L~i~~vli~i~a~~lV~si~~i~~~ 305 (438)
....+.+.++++.+..+.+.+.++..+++
T Consensus 467 ~~~~l~~~~~~lG~~p~~~~~~~~~~~~~ 495 (509)
T 3rko_M 467 MILLLVVLLVLLGFYPQPILDTSHSAIGN 495 (509)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555666666677777776666554
No 6
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=8.78 E-value=2.1e+02 Score=23.32 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=18.6
Q ss_pred HhC-CCcchHHHHHhHHHH---HHH---HHHHHHHH
Q 013691 335 FKN-KLDISLGVALGSATQ---IAV---FVVPLCVI 363 (438)
Q Consensus 335 ~kg-~~dlaig~~iGS~i~---~~l---~vipl~vl 363 (438)
.|| -+|+|+|.++|++.. +.+ ++.|+..+
T Consensus 30 ~rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~ 65 (114)
T 3hzq_A 30 LKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGK 65 (114)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 459999999999842 222 35676543
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=7.34 E-value=1.2e+03 Score=21.97 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013691 232 IVMLIGYFAYLVFQLWTHRE 251 (438)
Q Consensus 232 iiLl~~Y~~yl~f~l~th~~ 251 (438)
.++++.++.|.++..+++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 407 ATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 34444555555444444433
No 8
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=7.33 E-value=1.5e+02 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013691 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (438)
Q Consensus 111 e~la~~~G--------~~vggll~a~~gn~pE 134 (438)
+++.+.+| +|+||++..-+|..||
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 51 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence 44555555 4899999999998886
No 9
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.83 E-value=1.6e+02 Score=22.03 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.8
Q ss_pred CcccchhhhhccchhH
Q 013691 119 PTVGGLLNATCGNATE 134 (438)
Q Consensus 119 ~~vggll~a~~gn~pE 134 (438)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 5899999998898886
No 10
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=6.53 E-value=9.2e+02 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.032 Sum_probs=0.0
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHH
Q 013691 369 GITMDLNFNLLETGSLALAIIATAFTLQDG-TSHYMKGFVLLLCYFV 414 (438)
Q Consensus 369 g~~~~l~f~~~~~~~l~~svll~~~~~~~g-~~~~~~G~~Ll~~Y~i 414 (438)
+.+|.|...-.+-..++.+..+.---..+| |.||-|.+.++..++.
T Consensus 18 ~~~M~LtPrE~dkLli~~Aa~LA~rR~aRGlkLN~pEAvAlIs~~il 64 (120)
T 2fvh_A 18 GSHMRLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHIL 64 (120)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred CCcCCcCchhHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHH
Done!