Query 013691
Match_columns 438
No_of_seqs 305 out of 2075
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 15:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o1ra1 d.145.1.4 (A:1-78) Hyp 7.8 64 0.0047 22.2 1.2 24 111-134 17-48 (78)
2 d2oara1 f.16.1.1 (A:10-118) Ga 7.8 37 0.0027 25.6 -0.2 31 334-364 1-37 (109)
3 d2rk5a1 d.145.1.4 (A:5-88) Put 7.5 65 0.0047 22.4 1.1 24 111-134 17-48 (84)
4 d2p3ha1 d.145.1.4 (A:5-102) Un 5.9 88 0.0064 22.6 1.1 16 119-134 36-51 (98)
5 d2plia1 d.145.1.4 (A:5-88) Unc 5.9 90 0.0066 21.7 1.2 24 111-134 22-53 (84)
6 d2r2za1 d.145.1.4 (A:5-88) Put 5.8 92 0.0067 21.6 1.1 17 119-135 36-52 (84)
7 d1xrda1 f.3.1.1 (A:1-52) Light 4.8 1.6E+02 0.012 18.9 1.7 13 393-405 31-43 (52)
8 d2nqwa1 d.145.1.4 (A:4-90) Hyp 4.4 1.2E+02 0.0086 21.1 0.9 16 119-134 41-56 (87)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 4.3 3.8E+02 0.028 15.5 3.6 25 182-206 8-32 (37)
10 d1gesa3 d.87.1.1 (A:336-450) G 4.2 2.9E+02 0.021 19.9 3.2 31 309-341 64-94 (115)
No 1
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=7.80 E-value=64 Score=22.20 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013691 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (438)
Q Consensus 111 e~la~~~G--------~~vggll~a~~gn~pE 134 (438)
+++.+.+| +|+||++.--+|.+||
T Consensus 17 ~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 17 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 55666665 5899999998998886
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.78 E-value=37 Score=25.60 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred HHhCCCcchHHHHHhHHHH---HHH---HHHHHHHHH
Q 013691 334 AFKNKLDISLGVALGSATQ---IAV---FVVPLCVII 364 (438)
Q Consensus 334 a~kg~~dlaig~~iGS~i~---~~l---~vipl~vli 364 (438)
||.|-+|+|+|.++|++.. +++ ++.|+...+
T Consensus 1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 3445579999999999853 222 467877665
No 3
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=7.50 E-value=65 Score=22.37 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013691 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (438)
Q Consensus 111 e~la~~~G--------~~vggll~a~~gn~pE 134 (438)
+++.+++| +|+||++.--+|.+|+
T Consensus 17 ~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 17 NDFNEYFETDLESDNVDTIAGFYLTGVGTIPS 48 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred HHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence 45555555 5899999998998885
No 4
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=5.89 E-value=88 Score=22.61 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=14.0
Q ss_pred CcccchhhhhccchhH
Q 013691 119 PTVGGLLNATCGNATE 134 (438)
Q Consensus 119 ~~vggll~a~~gn~pE 134 (438)
+|+||+++.-+|.+|+
T Consensus 36 ~Tl~G~~~~~lg~iP~ 51 (98)
T d2p3ha1 36 ETISGLLFDHANALLK 51 (98)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHCcCCC
Confidence 5899999999998886
No 5
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=5.88 E-value=90 Score=21.74 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013691 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (438)
Q Consensus 111 e~la~~~G--------~~vggll~a~~gn~pE 134 (438)
+++.+.+| +|+||++.--+|.+|+
T Consensus 22 ~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~ 53 (84)
T d2plia1 22 EDINTFFGTEYSSEEADTIGGLVIQELGHLPV 53 (84)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCC
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHhCcccc
Confidence 45566665 4899999988888886
No 6
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.76 E-value=92 Score=21.63 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.9
Q ss_pred CcccchhhhhccchhHH
Q 013691 119 PTVGGLLNATCGNATEL 135 (438)
Q Consensus 119 ~~vggll~a~~gn~pEl 135 (438)
+|+||++..-+|..|+.
T Consensus 36 ~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 36 DTMAGYLITALGTIPDE 52 (84)
T ss_dssp CBHHHHHHHHHSSCCCT
T ss_pred hhHHHHHHHHhCcCCCC
Confidence 58999998888888863
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.78 E-value=1.6e+02 Score=18.87 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=9.5
Q ss_pred HHHhCCccchHHH
Q 013691 393 FTLQDGTSHYMKG 405 (438)
Q Consensus 393 ~~~~~g~~~~~~G 405 (438)
.++...|.||+||
T Consensus 31 iLLSt~rfNWleg 43 (52)
T d1xrda1 31 ILLSTERFNWLEG 43 (52)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHhccCccccccC
Confidence 3456678899887
No 8
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.38 E-value=1.2e+02 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.7
Q ss_pred CcccchhhhhccchhH
Q 013691 119 PTVGGLLNATCGNATE 134 (438)
Q Consensus 119 ~~vggll~a~~gn~pE 134 (438)
+|+||+++--+|.+||
T Consensus 41 ~Ti~G~i~~~lg~iP~ 56 (87)
T d2nqwa1 41 DTLSGLFLEIKQELPH 56 (87)
T ss_dssp SBHHHHHHHHHCSCCC
T ss_pred eeHHHHHHHHhCcccc
Confidence 5899999988888886
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.26 E-value=3.8e+02 Score=15.49 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=13.9
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHH
Q 013691 182 QKYDRKQADVNSLLLLLALLCHMLP 206 (438)
Q Consensus 182 ~~~~~~~a~~~~~ll~lav~~lllP 206 (438)
|......++.+..++++-++..++.
T Consensus 8 q~veLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHHH
Confidence 3333334456777777666655543
No 10
>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=4.21 E-value=2.9e+02 Score=19.86 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=25.4
Q ss_pred CccceeeeehhcccchhhHHHHHHHHHhCCCcc
Q 013691 309 SVSFISIILLPIVGNAAEHAGAIIFAFKNKLDI 341 (438)
Q Consensus 309 s~~fiGlillpi~ts~pE~~~ai~~a~kg~~dl 341 (438)
+..++|..++ |.++.|++..+..+.+.+..+
T Consensus 64 ~~~IlGa~iv--G~~A~ElI~~~~~ai~~~~t~ 94 (115)
T d1gesa3 64 EEKIVGIHGI--GFGMDEMLQGFAVALKMGATK 94 (115)
T ss_dssp TTEEEEEEEE--STTHHHHHHHHHHHHHTTCBH
T ss_pred CcEEEEEEEE--CCCHHHHHHHHHHHHHcCCcH
Confidence 4568888876 789999999999998887653
Done!