BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013692
         (438 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AQ4|A Chain A, Substrate Bound Sn-Glycerol-3-Phosphate Binding
           Periplasmic Protein Ugpb From Escherichia Coli
          Length = 419

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 209 PAEPPLAWQDTNGYDA-MQAQALAGGYQGEWQDYQYAEQLA 248
           P +PP  WQD   Y A ++A  +  GY   WQ +   E  +
Sbjct: 143 PEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFS 183


>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
 pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
          Length = 477

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 174 GKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGG 233
           G+ ++ S ++     S       +  +  VY  +  A P L W+D      + A  L   
Sbjct: 243 GEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 302

Query: 234 YQGEWQDYQYAEQLAYPEQYLQPDMQ 259
             G+W+D    ++ ++   + + D  
Sbjct: 303 ADGDWRDSAMGKKYSHRYGFGKIDAH 328


>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
 pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
          Length = 481

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 174 GKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGG 233
           G+ ++ S ++     S       +  +  VY  +  A P L W+D      + A  L   
Sbjct: 245 GEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 304

Query: 234 YQGEWQDYQYAEQLAYPEQYLQPDMQ 259
             G+W+D    ++ ++   + + D  
Sbjct: 305 ADGDWRDSAMGKKYSHRYGFGKIDAH 330


>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
 pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
          Length = 503

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 174 GKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGG 233
           G+ ++ S ++     S       +  +  VY  +  A P L W+D      + A  L   
Sbjct: 252 GEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 311

Query: 234 YQGEWQDYQYAEQLAYPEQYLQPDMQ 259
             G+W+D    ++ ++   + + D  
Sbjct: 312 ADGDWRDSAMGKKYSHRYGFGKIDAH 337


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,318,919
Number of Sequences: 62578
Number of extensions: 539274
Number of successful extensions: 808
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 10
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)