BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013692
(438 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1
Length = 557
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMV 59
+ ++VY+ + K ++ + NE+FLPGRM+++ + + Y++ DIPTTL RSKADCP +
Sbjct: 212 LGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQT 270
Query: 60 TVSVDGSVLDRIAKIMTYLRLGS 82
T++ + V+ ++ +I++YLR G+
Sbjct: 271 TLTTNDIVISKLTQILSYLRQGT 293
>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3
Length = 557
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMV 59
+ ++VY+ + K + + NE+FLPGRM+++ + + Y++ DIPTTL RSKADCP +
Sbjct: 212 LGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQT 270
Query: 60 TVSVDGSVLDRIAKIMTYLRLGS 82
T++ + V+ ++ +I++YLR G+
Sbjct: 271 TLTTNDIVISKLTQILSYLRQGT 293
>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1
Length = 557
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMV 59
+ ++VY+ + K + + NE+FLPGRM+++ + + Y++ DIPTTL RSKADCP +
Sbjct: 212 LGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQT 270
Query: 60 TVSVDGSVLDRIAKIMTYLRLGS 82
T++ + V+ ++ +I++YLR G+
Sbjct: 271 TLTTNDIVISKLTQILSYLRQGT 293
>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2
Length = 557
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 312 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 371
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 372 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 418
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RK+ME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEAD 548
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCPVPDEMV 59
+ ++VY+ + K ++ + NE+FLPGRM+++ + + Y++ DIPTTL RSKADCP +
Sbjct: 212 LGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQT 270
Query: 60 TVSVDGSVLDRIAKIMTYLRLGS 82
T++ + V+ ++ +I++YLR G+
Sbjct: 271 TLTTNDIVISKLTQILSYLRQGT 293
>sp|B2A6B7|OBG_NATTJ GTPase obg OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=obg PE=3 SV=1
Length = 452
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 248 AYPEQYLQPDMQTYEMQAG--LNMPQDPRFMTQEEKDRGLGSVFKRDDQR---LLQLREK 302
+Y L P++ E++ G M P + + RGLG F R +R L+ + +
Sbjct: 187 SYHFTTLNPNLGVVELEEGSRFVMADIPGLIEGAHQGRGLGDQFLRHIERTKMLIHVIDI 246
Query: 303 DARE-KDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRW 355
+ E +DP E+ +E GY N ++D +KMD+G +A+ L R
Sbjct: 247 ASIEGRDPVLDIETINEELKGY---NSRVMDKPQVIAANKMDLGDQAEENLQRL 297
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 33.1 bits (74), Expect = 4.0, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 251 EQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPN 310
E L D + +++ L++ + M +EE D+ L + D R+ ++ EK+ E N
Sbjct: 675 ENILNNDEEVCDLKRKLSLKESEMKMMKEEHDKKLAELKDDCDVRIREMNEKN--EDKIN 732
Query: 311 FISESYSECYPGYQEYNREIVDSDDEDDLSKMD-MGGRAKGRLHRWDFETEEEWATYNEQ 369
+ E Y + +E N + +++ E + K++ + + +++ E E + T NEQ
Sbjct: 733 MLKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQ 792
Query: 370 KE 371
E
Sbjct: 793 NE 794
>sp|A4VIE6|CYSD_PSEU5 Sulfate adenylyltransferase subunit 2 OS=Pseudomonas stutzeri
(strain A1501) GN=cysD PE=3 SV=1
Length = 305
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 187 EESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGY----DAMQAQALAGGYQGEWQDYQ 242
EE R KE+V F +S + P + P W NG ++++ L+ + + Y
Sbjct: 138 EEKSRAKERVYSFRDSKHRWDPKNQRPELWNLYNGKVKKGESIRVFPLSNWTELDIWQYI 197
Query: 243 YAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMT 277
Y EQ+ Y + + E+ L M D R ++
Sbjct: 198 YLEQIPIVPLYFAAEREVVELNGTLVMIDDERILS 232
>sp|A4XQP2|CYSD_PSEMY Sulfate adenylyltransferase subunit 2 OS=Pseudomonas mendocina
(strain ymp) GN=cysD PE=3 SV=1
Length = 305
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 187 EESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGY----DAMQAQALAGGYQGEWQDYQ 242
EE R KE+V F +S + P + P W NG ++++ L+ + + Y
Sbjct: 138 EEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGKVKKGESIRVFPLSNWTELDIWQYI 197
Query: 243 YAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPR---FMTQEEK 281
Y EQ+ Y + + E+ L M D R ++T E+K
Sbjct: 198 YLEQIPIVPLYFAAEREVVELNGTLVMIDDERILNYLTPEQK 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,039,951
Number of Sequences: 539616
Number of extensions: 8910236
Number of successful extensions: 35951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 35139
Number of HSP's gapped (non-prelim): 812
length of query: 438
length of database: 191,569,459
effective HSP length: 120
effective length of query: 318
effective length of database: 126,815,539
effective search space: 40327341402
effective search space used: 40327341402
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)