Query 013692
Match_columns 438
No_of_seqs 92 out of 94
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2498 IK cytokine down-regul 100.0 1.9E-97 4E-102 755.7 17.1 323 1-426 212-539 (544)
2 PF07807 RED_C: RED-like prote 100.0 3.6E-59 7.8E-64 403.9 8.7 107 316-423 1-110 (118)
3 PF07808 RED_N: RED-like prote 100.0 9.8E-35 2.1E-39 277.0 6.8 91 1-92 145-238 (238)
4 KOG2498 IK cytokine down-regul 99.5 2.2E-14 4.8E-19 148.6 3.8 192 2-207 123-318 (544)
5 COG4712 Uncharacterized protei 30.3 23 0.00051 35.0 0.9 33 352-384 81-114 (234)
6 KOG0573 Asparagine synthase [A 19.0 43 0.00092 36.8 0.4 66 312-385 433-501 (520)
7 PF13821 DUF4187: Domain of un 15.8 1.2E+02 0.0025 24.0 2.0 15 66-80 11-25 (55)
8 PF12907 zf-met2: Zinc-binding 15.8 96 0.0021 23.3 1.5 10 314-323 31-40 (40)
9 PF05422 SIN1: Stress-activate 13.7 62 0.0013 35.6 0.0 20 314-337 60-79 (523)
10 TIGR00570 cdk7 CDK-activating 12.0 1.3E+02 0.0029 31.2 1.8 21 353-373 85-105 (309)
No 1
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-97 Score=755.75 Aligned_cols=323 Identities=49% Similarity=0.775 Sum_probs=288.1
Q ss_pred ChhhHHHHHhcCCCcCcccccccCCceEEEEeCCCCCC-CCCcccccccccCCCC-CccceecccchHHHHHHHHHHHHH
Q 013692 1 MAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYL 78 (438)
Q Consensus 1 laRnIy~~lfk~k~~~~rNElFlPGRMAYVfDLdde~~-~DIPTTliRSKaDcP~-~ee~~t~~~ddiVI~KLaqImSYL 78 (438)
|+||||+.||+|+. .++|+||+|||||||++|++++. +||||||.||++|||+ .++..+++||++||++|.+|+|||
T Consensus 212 ~~r~~~~~l~~n~~-~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~l 290 (544)
T KOG2498|consen 212 LGRNVYRVLFKNKE-DERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYL 290 (544)
T ss_pred hcchhhhHhhhccc-cccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhh
Confidence 68999999999986 69999999999999999999987 9999999999999999 789999999999999999999999
Q ss_pred hcCCCCcc-hhhhhhcccccccCcccccccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccccCCCCCCC
Q 013692 79 RLGSSGKV-LKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARS 157 (438)
Q Consensus 79 R~G~~gKk-~KKKkK~kd~~~~g~~~~~~~~~~~~~kp~~~~g~~~~~~~~~~~~Pp~~~~p~~~~~~~~e~~~~~~~~~ 157 (438)
|+|.++|| ++|++|.+ ..+ ++ |.+
T Consensus 291 r~~~~~kK~~~krDk~k-~~~--------------~~----------------------------------------P~~ 315 (544)
T KOG2498|consen 291 RAGDRNKKPLKKRDKPK-LYF--------------DK----------------------------------------PVE 315 (544)
T ss_pred ccCCcccCccccccccc-ccc--------------cC----------------------------------------ccc
Confidence 99999998 77776665 110 00 125
Q ss_pred CCCCccccCCccccCCCCCCCCCCCccccccCccccccCCCCCCCCCCCCCCCCCCccccccCcchHHHHHHhhcCCccc
Q 013692 158 EEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGE 237 (438)
Q Consensus 158 ~dd~IF~d~g~DY~vp~~~~~~s~~~ed~~~~~~~~~r~sYF~~p~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~e 237 (438)
.+.+||. +++|| ||+...+. +.|+... |+++|.++...++.++
T Consensus 316 ~~~~iy~-~~g~Y-~P~~~s~~----------------------------------~~~~~ks-~~a~qdrg~d~~~d~e 358 (544)
T KOG2498|consen 316 GEKVIYE-DEGDY-VPSTPSAG----------------------------------SRDQGKS-YGAMQDRGRDRGRDRE 358 (544)
T ss_pred ccccccc-ccccc-cCCCCCCC----------------------------------ccccccc-cchhhhcccCCCCcch
Confidence 5889996 55599 88742211 1243333 7888999999999999
Q ss_pred chhhhhhhhhccccccccchhhhHhhhhCCCCCCCCccccHHHHhhccCccccchHHHHHHHHHhhhhcCCCCCCCCccc
Q 013692 238 WQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYS 317 (438)
Q Consensus 238 w~~y~~~~q~~~~~~~~~~~~~~y~~~~~~~~~~~p~~~~q~~k~~glgs~f~rdd~~l~q~re~~arekdp~~~sesYA 317 (438)
|+.|+++ |.++|+++++.+|....- ..+|..|++++++++++++|.+++|+ |++|-.++++||-|+|+||+
T Consensus 359 ~~~~rd~----~r~r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ 429 (544)
T KOG2498|consen 359 RQRYRDA----NRDRYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYA 429 (544)
T ss_pred hhhhhhh----hhhhhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchh
Confidence 9999998 577899999999887752 46899999999999999999999998 89999999999999999999
Q ss_pred cccCChhhhhhcccCCCcccccccccCCCCCCCCccccccccHHHHHHHhHhhhhcchhhHhhccccccccccccc--ch
Q 013692 318 ECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ--NK 395 (438)
Q Consensus 318 ECYPG~~e~~~~i~DSDDE~DySKMD~Gn~~KGpl~RWDFdTeEEy~~Ym~~kEalPKAAfQyGvK~~dGrKtrk~--~~ 395 (438)
|||||++|||++|||||||+||||||||| ||||||||||||||||++||++|||||||||||||||+|||||||+ |.
T Consensus 430 ECYPgl~em~hei~~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~ 508 (544)
T KOG2498|consen 430 ECYPGLQEMNHEIVDSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRND 508 (544)
T ss_pred hhccchhhhcccccccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccch
Confidence 99999999999999999999999999999 7999999999999999999999999999999999999999999998 57
Q ss_pred hhHhHHHHHHHHHHHHhhhcccCCCCCCCCc
Q 013692 396 DQKLTNELHKINKILARKKMEKDTNGEGGHY 426 (438)
Q Consensus 396 ~~kLdre~~kI~~Il~krk~~~~~~~~~~~~ 426 (438)
+|+|||||+|||+||+|||++++||++|+.|
T Consensus 509 ~~~Ldre~~~InkIi~krK~~~~ggggg~e~ 539 (544)
T KOG2498|consen 509 KAELDRELHKINKIITKRKMEKDGGGGGAEY 539 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCcccc
Confidence 8999999999999999999999999888443
No 2
>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].
Probab=100.00 E-value=3.6e-59 Score=403.88 Aligned_cols=107 Identities=68% Similarity=1.103 Sum_probs=101.8
Q ss_pred cccccCChhhhhhcccCCCcccccccccCCCCCCCCccccccccHHHHHHHhHhhhhcchhhHhhccccccccccccc--
Q 013692 316 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ-- 393 (438)
Q Consensus 316 YAECYPG~~e~~~~i~DSDDE~DySKMD~Gn~~KGpl~RWDFdTeEEy~~Ym~~kEalPKAAfQyGvK~~dGrKtrk~-- 393 (438)
|||||||++||+++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+
T Consensus 1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~ 79 (118)
T PF07807_consen 1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE 79 (118)
T ss_pred CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence 9999999999999999999999999999999 6999999999999999999999999999999999999999999996
Q ss_pred -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 013692 394 -NKDQKLTNELHKINKILARKKMEKDTNGEG 423 (438)
Q Consensus 394 -~~~~kLdre~~kI~~Il~krk~~~~~~~~~ 423 (438)
+++++|||||++|++||++||++++|+..+
T Consensus 80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~ 110 (118)
T PF07807_consen 80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG 110 (118)
T ss_pred hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence 468899999999999999999888776544
No 3
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=100.00 E-value=9.8e-35 Score=276.97 Aligned_cols=91 Identities=47% Similarity=0.902 Sum_probs=85.1
Q ss_pred ChhhHHHHH--hcCCCcCcccccccCCceEEEEeCCCCCC-CCCcccccccccCCCCCccceecccchHHHHHHHHHHHH
Q 013692 1 MAKSVYQWI--VKPQTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 77 (438)
Q Consensus 1 laRnIy~~l--fk~k~~~~rNElFlPGRMAYVfDLdde~~-~DIPTTliRSKaDcP~~ee~~t~~~ddiVI~KLaqImSY 77 (438)
+||+||++| |+++. +.+||||+||||||||||++++. +||||||||||+|||.+++++++++|++||+||+|||||
T Consensus 145 ~~r~I~~~~~~~~~~~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsy 223 (238)
T PF07808_consen 145 LARNIFKTLFQFKSKK-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSY 223 (238)
T ss_pred HHHHHHHHHHhccccc-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHH
Confidence 589999999 56765 57899999999999999999984 999999999999999999999999999999999999999
Q ss_pred HhcCCCCcchhhhhh
Q 013692 78 LRLGSSGKVLKKKKK 92 (438)
Q Consensus 78 LR~G~~gKk~KKKkK 92 (438)
||+|++||++|||+|
T Consensus 224 lr~g~~~kk~KKk~k 238 (238)
T PF07808_consen 224 LRQGSRHKKNKKKKK 238 (238)
T ss_pred HhcccchhhhhccCC
Confidence 999999999888865
No 4
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-14 Score=148.64 Aligned_cols=192 Identities=27% Similarity=0.263 Sum_probs=156.3
Q ss_pred hhhHHHHHhcCCCcCcccccccCCceEEEEeCCCCCCCCCcccccccccCCCCCccceecccch--HHHHHHHHHHHHHh
Q 013692 2 AKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLR 79 (438)
Q Consensus 2 aRnIy~~lfk~k~~~~rNElFlPGRMAYVfDLdde~~~DIPTTliRSKaDcP~~ee~~t~~~dd--iVI~KLaqImSYLR 79 (438)
++.+++|+.+.+.| ..+ +||+|+|-++..+..-...+|++++.+++++|+..++.++..+|+ .+...+.+|+++||
T Consensus 123 ~k~~~q~i~rrq~I-~eS-KfLGGDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r 200 (544)
T KOG2498|consen 123 EKDKDQAIKRRQLI-QES-KFLGGDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELR 200 (544)
T ss_pred hhhhHHHHHHHHHH-HHh-hhcCCccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHh
Confidence 56789999988765 444 999999999999998767999999999999999999999999999 99999999999999
Q ss_pred cCCCCcchhhhhhcccccccCcccccccccccccCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCc-cccccCCCCCCC
Q 013692 80 LGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPP-PPKKNHVD-SREKQGPIVARS 157 (438)
Q Consensus 80 ~G~~gKk~KKKkK~kd~~~~g~~~~~~~~~~~~~kp~~~~g~~~~~~~~~~~~Pp~~~-~p~~~~~~-~~e~~~~~~~~~ 157 (438)
+|..++.++ +++.++.. ..+.-|++++...-....-.+..++.+.+++|+.+| ++..|+.+ .+..+.+++...
T Consensus 201 ~~e~~~~~~-~~~~r~~~----~~l~~n~~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~t 275 (544)
T KOG2498|consen 201 LGESGKVLK-KKLGRNVY----RVLFKNKEDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTT 275 (544)
T ss_pred hchhhhhhh-hhhcchhh----hHhhhccccccccccCCCCcceeeeccccccCCCCCcccccccccccchhcccccccc
Confidence 999999999 66776543 233456666655555555666779999999987777 45667777 777888889999
Q ss_pred CCCCccccCCccccCCCCCCCCCCCccccccCccccccCCCCCCCCCCCC
Q 013692 158 EEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPV 207 (438)
Q Consensus 158 ~dd~IF~d~g~DY~vp~~~~~~s~~~ed~~~~~~~~~r~sYF~~p~~~~~ 207 (438)
.|+.||...+++|.++..+..+++ .+.|++.. +||++|+++..
T Consensus 276 nd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P~~~~~ 318 (544)
T KOG2498|consen 276 NDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKPVEGEK 318 (544)
T ss_pred ccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCcccccc
Confidence 999999999999999987776664 24455555 78888776633
No 5
>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.35 E-value=23 Score=35.02 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=26.0
Q ss_pred ccccccccHHHHHHHhHhh-hhcchhhHhhcccc
Q 013692 352 LHRWDFETEEEWATYNEQK-EAMPKAAFQFGVKM 384 (438)
Q Consensus 352 l~RWDFdTeEEy~~Ym~~k-EalPKAAfQyGvK~ 384 (438)
|+|||.-++-+-+.|..+= .+|-.|||||||=.
T Consensus 81 VTk~D~ge~~~~ea~Kg~aSdsmKRaavqfGIGR 114 (234)
T COG4712 81 VTKQDVGEESNTEAEKGQASDSMKRAAVQFGIGR 114 (234)
T ss_pred eeeccccccchhHHHhcccchHHHHHHhhhccch
Confidence 4789998888877777653 57889999999843
No 6
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=19.00 E-value=43 Score=36.82 Aligned_cols=66 Identities=30% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCCccccc-cCChhhhhhcccCCCcccccccccCCCCCCCCccccccccHHHHHHHhHhhhhc--chhhHhhccccc
Q 013692 312 ISESYSEC-YPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAM--PKAAFQFGVKMQ 385 (438)
Q Consensus 312 ~sesYAEC-YPG~~e~~~~i~DSDDE~DySKMD~Gn~~KGpl~RWDFdTeEEy~~Ym~~kEal--PKAAfQyGvK~~ 385 (438)
|+++=-|| ||=+.|+- +.=|-...=+.||++|-+. |. ==---|+..+..-.-+- ||-|.|||.||+
T Consensus 433 iad~Gke~R~PFLde~v--V~~~~~l~~~~k~~l~l~G-G~-----KlllRe~~~~lGl~~~s~~pKrAmQFGSr~A 501 (520)
T KOG0573|consen 433 IADSGKEVRSPFLDENV--VKLSNALPVSVKMMLGLRG-GE-----KLLLREAGRRLGLPSASTEPKRAMQFGSRMA 501 (520)
T ss_pred hhccCceEeccchHHHH--HHHHHhcchhHHhhhcccc-hh-----hHHHHHHHHHhCCCcccccchHHHHhhhhhh
Confidence 67777787 67664321 2223334445688888632 21 01124677777666554 999999999998
No 7
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=15.83 E-value=1.2e+02 Score=23.96 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhc
Q 013692 66 SVLDRIAKIMTYLRL 80 (438)
Q Consensus 66 iVI~KLaqImSYLR~ 80 (438)
.+.+||..|++|||.
T Consensus 11 ~~~e~L~~l~~YLR~ 25 (55)
T PF13821_consen 11 SPEERLDKLLSYLRE 25 (55)
T ss_pred CHHHHHHHHHHHHHh
Confidence 467899999999994
No 8
>PF12907 zf-met2: Zinc-binding
Probab=15.79 E-value=96 Score=23.35 Aligned_cols=10 Identities=30% Similarity=1.195 Sum_probs=8.3
Q ss_pred CccccccCCh
Q 013692 314 ESYSECYPGY 323 (438)
Q Consensus 314 esYAECYPG~ 323 (438)
+.++||+|++
T Consensus 31 ~~~~~CFP~l 40 (40)
T PF12907_consen 31 NTFEECFPNL 40 (40)
T ss_pred CCHHHcCCCC
Confidence 5699999985
No 9
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=13.69 E-value=62 Score=35.63 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=0.0
Q ss_pred CccccccCChhhhhhcccCCCccc
Q 013692 314 ESYSECYPGYQEYNREIVDSDDED 337 (438)
Q Consensus 314 esYAECYPG~~e~~~~i~DSDDE~ 337 (438)
..++|||||. |.-+||||..
T Consensus 60 ~~~~~~~~~~----dlsDd~d~~~ 79 (523)
T PF05422_consen 60 RVEFECYPSS----DLSDDEDDGD 79 (523)
T ss_dssp ------------------------
T ss_pred cccccccccc----ccCcCccccc
Confidence 4789999999 4555555433
No 10
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=11.97 E-value=1.3e+02 Score=31.24 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred cccccccHHHHHHHhHhhhhc
Q 013692 353 HRWDFETEEEWATYNEQKEAM 373 (438)
Q Consensus 353 ~RWDFdTeEEy~~Ym~~kEal 373 (438)
.+=||+|-.+|.+|.+..|-|
T Consensus 85 ~e~dF~~l~~yNdYLE~vEdi 105 (309)
T TIGR00570 85 REEDFPSLREYNDYLEEVEDI 105 (309)
T ss_pred chhccCCHHHHHHHHHHHHHH
Confidence 578999999999999999976
Done!