Query 013692
Match_columns 438
No_of_seqs 92 out of 94
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i5e_A Hypothetical protein MM 21.9 42 0.0015 29.3 2.2 33 354-389 169-206 (211)
2 2ys3_A UNC-112-related protein 14.5 1.9E+02 0.0063 25.6 4.6 40 357-411 94-133 (137)
3 3oak_C Transcription elongatio 10.9 60 0.002 22.6 0.2 10 161-171 15-24 (31)
4 1kvn_A SRP19; RNA binding prot 9.7 74 0.0025 26.8 0.4 30 63-92 73-102 (104)
5 1iyc_A Scarabaecin; antifungal 9.0 1E+02 0.0036 21.6 0.9 12 44-55 10-21 (36)
6 2i7u_A Four-alpha-helix bundle 8.9 3E+02 0.01 21.1 3.5 29 395-424 7-35 (62)
7 3c0t_B Mediator of RNA polymer 8.5 2E+02 0.007 19.8 2.2 17 69-85 8-24 (33)
8 2e8b_A Probable molybdopterin- 6.9 1.1E+02 0.0036 26.5 0.2 18 350-367 178-195 (201)
9 2jrw_A Cyclic extended PEP.1; 6.8 2.3E+02 0.0078 18.7 1.7 15 196-210 9-23 (26)
10 2cob_A LCOR protein; MLR2, KIA 6.1 2E+02 0.0068 23.0 1.4 35 348-382 7-42 (70)
No 1
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=21.87 E-value=42 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=23.9
Q ss_pred ccccccHHHHHHHhHh-----hhhcchhhHhhccccccccc
Q 013692 354 RWDFETEEEWATYNEQ-----KEAMPKAAFQFGVKMQDGRK 389 (438)
Q Consensus 354 RWDFdTeEEy~~Ym~~-----kEalPKAAfQyGvK~~dGrK 389 (438)
.+|.||.|+|...... ++.|-. . |.|...+||=
T Consensus 169 ~~DVDTpeDl~~~~~~~~g~t~~~l~~--~-~~~~~~~~~~ 206 (211)
T 2i5e_A 169 GTDIDEPEDLVELLIHGKGAAKDYIES--K-FRLEVKKGRV 206 (211)
T ss_dssp TCCCCSHHHHHHHHHHCCSHHHHHHHT--T-EEEEECSSSE
T ss_pred ccCCCCHHHHHHHHHcCCchHHHHHHH--h-heeeccCCce
Confidence 4999999999887764 444433 3 7888888873
No 2
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.53 E-value=1.9e+02 Score=25.61 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=27.3
Q ss_pred cccHHHHHHHhHhhhhcchhhHhhcccccccccccccchhhHhHHHHHHHHHHHH
Q 013692 357 FETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 411 (438)
Q Consensus 357 FdTeEEy~~Ym~~kEalPKAAfQyGvK~~dGrKtrk~~~~~kLdre~~kI~~Il~ 411 (438)
+||+|+|+++|. ||=+|+ +|-=|+|- --.+|.+.|...|.
T Consensus 94 cdsEeqy~~WMa---A~rlAs--kgktma~~----------sy~~ev~~i~~~l~ 133 (137)
T 2ys3_A 94 CQDEQQYARWMA---GCRLAS--KGRTMADS----------SYTSEVQAILAFLS 133 (137)
T ss_dssp ESSHHHHHHHHH---HHHHHH--TSCCTTST----------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH---HHHHhc--cCcchhhh----------hhHHHHHHHHHHHH
Confidence 899999999997 555555 44444443 45567777766665
No 3
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=10.93 E-value=60 Score=22.55 Aligned_cols=10 Identities=70% Similarity=1.358 Sum_probs=8.0
Q ss_pred CccccCCcccc
Q 013692 161 DIFVGAGTDYT 171 (438)
Q Consensus 161 ~IF~d~g~DY~ 171 (438)
.|| |+|.||.
T Consensus 15 eiF-GdG~dY~ 24 (31)
T 3oak_C 15 DIF-GDGHDYD 24 (31)
T ss_dssp HHH-CCSCTTH
T ss_pred HHh-CCCchhh
Confidence 489 7999993
No 4
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=9.73 E-value=74 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 013692 63 VDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 92 (438)
Q Consensus 63 ~ddiVI~KLaqImSYLR~G~~gKk~KKKkK 92 (438)
.-..||..||+.|--+|...++++..||+|
T Consensus 73 ~K~~ll~~Ia~~I~~~r~r~~~~~~~~~~~ 102 (104)
T 1kvn_A 73 TKTKLMIELARKIAEIREQKREQKKDKKKK 102 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred CHHHHHHHHHHHHHHhhccccccCcccccc
Confidence 456899999999998988776666555544
No 5
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=8.98 E-value=1e+02 Score=21.57 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.6
Q ss_pred cccccccCCCCC
Q 013692 44 TLHRSKADCPVP 55 (438)
Q Consensus 44 TliRSKaDcP~~ 55 (438)
.||||.+.||.-
T Consensus 10 vlirsrsncpkg 21 (36)
T 1iyc_A 10 VLIRSRSNCPKG 21 (36)
T ss_dssp CCCTTTSCCCSS
T ss_pred EEEeeccCCCCc
Confidence 589999999974
No 6
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=8.87 E-value=3e+02 Score=21.13 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=17.5
Q ss_pred hhhHhHHHHHHHHHHHHhhhcccCCCCCCC
Q 013692 395 KDQKLTNELHKINKILARKKMEKDTNGEGG 424 (438)
Q Consensus 395 ~~~kLdre~~kI~~Il~krk~~~~~~~~~~ 424 (438)
+.++|=.||+|+..--.|- .+..|+++||
T Consensus 7 eaaklfeewkklaeeaakl-legggggggg 35 (62)
T 2i7u_A 7 EAAKLFEEWKKLAEEAAKL-LEGGGGGGGG 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHCSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCCCchH
Confidence 5689999999986544433 3333333333
No 7
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=8.54 E-value=2e+02 Score=19.77 Aligned_cols=17 Identities=12% Similarity=0.520 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCCCc
Q 013692 69 DRIAKIMTYLRLGSSGK 85 (438)
Q Consensus 69 ~KLaqImSYLR~G~~gK 85 (438)
..|+.|||+++.|.|-.
T Consensus 8 qmltdilsfmksgkraa 24 (33)
T 3c0t_B 8 QMLTDILSFMKSGKRAA 24 (33)
T ss_dssp HHHHHHHHHHHHCCCCG
T ss_pred HHHHHHHHHHHcchHHH
Confidence 45789999999776543
No 8
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=6.95 E-value=1.1e+02 Score=26.51 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=8.2
Q ss_pred CCccccccccHHHHHHHh
Q 013692 350 GRLHRWDFETEEEWATYN 367 (438)
Q Consensus 350 Gpl~RWDFdTeEEy~~Ym 367 (438)
+.+-|||.+|.|+|....
T Consensus 178 ~~~~~~dintpedl~~~~ 195 (201)
T 2e8b_A 178 LRYTLLNMNTKEDLKRIL 195 (201)
T ss_dssp GGGGGCCSCCC-------
T ss_pred cchhhcCCCCHHHHHHHH
Confidence 444567999999997654
No 9
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=6.84 E-value=2.3e+02 Score=18.69 Aligned_cols=15 Identities=53% Similarity=1.010 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCC
Q 013692 196 VSYFSESVYGPVPPA 210 (438)
Q Consensus 196 ~sYF~~p~~~~~pp~ 210 (438)
..||++..|-|+||-
T Consensus 9 enyfserpyhppppc 23 (26)
T 2jrw_A 9 ENYFSERPYHPPPPC 23 (26)
T ss_dssp SSSCCSSSCCSCSCC
T ss_pred hhhcccCCCCCCCCC
Confidence 479999878877653
No 10
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=6.13 E-value=2e+02 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCCccccccccH-HHHHHHhHhhhhcchhhHhhcc
Q 013692 348 AKGRLHRWDFETE-EEWATYNEQKEAMPKAAFQFGV 382 (438)
Q Consensus 348 ~KGpl~RWDFdTe-EEy~~Ym~~kEalPKAAfQyGv 382 (438)
+.|.-.-|+=|.- +-.+.-++.+-..-+||.+|||
T Consensus 7 k~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGV 42 (70)
T 2cob_A 7 GRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGI 42 (70)
T ss_dssp CSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHHHcCCccHHHHHHHhCC
Confidence 3444444554432 2345556666678899999999
Done!