BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013695
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 165/273 (60%), Gaps = 24/273 (8%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
V DLES R +FG+P++ K+++ YDGRG + K+E++L +AI Y+E++
Sbjct: 121 VKDLESDVR---EFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKG------ETYLEEF 171
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKE--NICHIVKAPAAVPWKISELATDVAHKA 120
KELAV V R I CYPVVE E NIC V APA + K S++A ++A
Sbjct: 172 VEIEKELAVXVARNEKGEIACYPVVEXYFDEDANICDTVIAPARIEEKYSKIAREIATSV 231
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
V +LEG GIF +E F T G+IL+NE+APRPHNSGH+TIE+C TSQFEQH+RA+ LPLG
Sbjct: 232 VEALEGVGIFGIEXFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIXNLPLG 291
Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG--KALSIPGATVHWYDKPEMRQQRKMGH 238
+ P A+ NLL GE G+Y LIG +AL+I G ++H+Y K E R RK GH
Sbjct: 292 STELLIP-AVXVNLL----GEEGYYGKPALIGLEEALAIEGLSLHFYGKKETRPYRKXGH 346
Query: 239 ITIVGSSM------GLVESRLNSLLKEDSSDCQ 265
T+V + L ++ ++ E+ + CQ
Sbjct: 347 FTVVDRDVERALEKALRAKKILKVVSEEGAXCQ 379
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 161/249 (64%), Gaps = 9/249 (3%)
Query: 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA 70
+ G+Q GYPLM+KSK +AYDGRGN S++++ A+ AL DR LY EKWA F ELA
Sbjct: 154 KVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK--DRPLYAEKWAYFKMELA 211
Query: 71 VIVVRGRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGI 129
VIVV+ +D+ +L YP VET+ +++IC +V APA V I++ A ++A KAV++ +G G+
Sbjct: 212 VIVVKTKDE-VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGV 270
Query: 130 FAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKT-PA 188
F VE+F + I+L E+A R HNSGH+TIE C SQF+ H+RA++ LP+ S++
Sbjct: 271 FGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQSLEIRQP 330
Query: 189 AIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGL 248
+IM N++G A + Q ALSIP A++H Y K + RKMGHIT+ +M
Sbjct: 331 SIMLNIIGGAAPDTHL----QAAECALSIPNASIHLYSKGAAKPGRKMGHITVTAPTMHE 386
Query: 249 VESRLNSLL 257
E+ + L+
Sbjct: 387 AETHIQPLI 395
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 161/249 (64%), Gaps = 9/249 (3%)
Query: 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA 70
+ G+Q GYPLM+KSK +AYDGRGN S++++ A+ AL DR LY EKWA F ELA
Sbjct: 154 KVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK--DRPLYAEKWAYFKMELA 211
Query: 71 VIVVRGRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGI 129
VIVV+ +D+ +L YP VET+ +++IC +V APA V I++ A ++A KAV++ +G G+
Sbjct: 212 VIVVKTKDE-VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGV 270
Query: 130 FAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKT-PA 188
F VE+F + I+L E+A R HNSGH+TIE C SQF+ H+RA++ LP+ S++
Sbjct: 271 FGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQSLEIRQP 330
Query: 189 AIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGL 248
+IM N++G A + Q ALSIP A++H Y K + RKMGHIT+ +M
Sbjct: 331 SIMLNIIGGAAPDTHL----QAAECALSIPNASIHLYSKGAAKPGRKMGHITVTAPTMHE 386
Query: 249 VESRLNSLL 257
E+ + L+
Sbjct: 387 AETHIQPLI 395
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 13/255 (5%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
V + E A + YP ++K+ YDG+G V +SE ++ A + +EKW
Sbjct: 127 VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKW 184
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVS 122
PF KE++VIV+R +PV E IH NI H PA + ++S+ A A
Sbjct: 185 VPFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLAD 244
Query: 123 SLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182
LE G AVE+F T +G+I +NE+APRPHNSGH+T ++C TSQF QH+RA+ LPLG+
Sbjct: 245 ELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLGET 304
Query: 183 SMKTPAAIMYNLLGE-AEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241
++ P +M N+LGE EG ++ + + G +H Y K E + QRKMGH+ I
Sbjct: 305 NLLKP-VVMVNILGEHIEG---------VLRQVNRLTGCYLHLYGKEEAKAQRKMGHVNI 354
Query: 242 VGSSMGLVESRLNSL 256
+ ++ + + SL
Sbjct: 355 LNDNIEVALEKAKSL 369
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 13/255 (5%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
V + E A + YP ++K+ YDG+G V +SE ++ A + +EKW
Sbjct: 133 VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKW 190
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVS 122
PF KE++VIV+R +PV E IH NI H PA + ++S+ A A
Sbjct: 191 VPFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLAD 250
Query: 123 SLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182
LE G AVE+F T +G+I +NE+APRPHNSGH+T ++C TSQF QH+RA+ LPLG+
Sbjct: 251 ELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLGET 310
Query: 183 SMKTPAAIMYNLLGE-AEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241
++ P +M N+LGE EG ++ + + G +H Y K E + QRKMGH+ I
Sbjct: 311 NLLKP-VVMVNILGEHIEG---------VLRQVNRLTGCYLHLYGKEEAKAQRKMGHVNI 360
Query: 242 VGSSMGLVESRLNSL 256
+ ++ + + SL
Sbjct: 361 LNDNIEVALEKAKSL 375
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 13/255 (5%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
V + E A + YP ++K+ YDG+G V +SE ++ A + +EKW
Sbjct: 133 VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKW 190
Query: 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVS 122
PF KE++VIV+R +PV E IH NI H PA + ++S+ A A
Sbjct: 191 VPFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLAD 250
Query: 123 SLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182
LE G AVE+F T +G+I +NE+APRPHNSGH+T ++C TSQF QH+RA+ LPLG+
Sbjct: 251 ELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLGET 310
Query: 183 SMKTPAAIMYNLLGE-AEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241
++ P +M N+LGE EG ++ + + G +H Y K E + QRKMGH+ I
Sbjct: 311 NLLKP-VVMVNILGEHIEG---------VLRQVNRLTGCYLHLYGKEEAKAQRKMGHVNI 360
Query: 242 VGSSMGLVESRLNSL 256
+ ++ + + SL
Sbjct: 361 LNDNIEVALEKAKSL 375
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 150/260 (57%), Gaps = 22/260 (8%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWA 63
DLE K+ G P ++K++R YDG+G A+ ++EEE A+ ALGG RGL +E +
Sbjct: 121 EDLEEGL---KRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGG--RGLILEGFV 175
Query: 64 PFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVS 122
PF +E++++ VRGR + YP+VE H I + APA + + A A +A+
Sbjct: 176 PFDREVSLLAVRGRTGEVAFYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAME 235
Query: 123 SLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182
+L+ G+ A+E F ++L NE+APR HNSGH TIE TSQFE H+RAV+GLPLG
Sbjct: 236 ALDYVGVLALEFFQVGE-ELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPLGST 294
Query: 183 SMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242
+ + +A M NL+GE + L + GA +HWY K +R RK+GHIT+
Sbjct: 295 APRGQSA-MVNLIGE----------KPPFAEVLKVEGAHLHWYGK-AVRPGRKVGHITLR 342
Query: 243 GSSMGLVE---SRLNSLLKE 259
+ +E +RL+ L+ E
Sbjct: 343 RDGLKALEEGLARLSRLVSE 362
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 104/169 (61%)
Query: 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXX 329
+PR+GIIMGSDSDLPVMK AA+IL F + +E+ IVSAHRTPD MF YA +A ER
Sbjct: 13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVI 72
Query: 330 XXXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXX 389
HLPGMVA+ T LPVIGVPV+ IVQMP GVP
Sbjct: 73 IAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKN 132
Query: 390 XGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH 438
G+LA +LG ++ ++++Y E M+ +VL KA++L++ G++ YLN
Sbjct: 133 AGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQ 181
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 121/228 (53%), Gaps = 8/228 (3%)
Query: 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78
P ++K+ RL YDG+G + E A ALGG +EK P E++ ++ RG D
Sbjct: 173 PGILKTARLGYDGKGQVRVSTAREARDAHAALGGVP--CVLEKRLPLKYEVSALIARGAD 230
Query: 79 KSILCYPVVETIHKENIC--HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136
+P+ + +H I IV APAA ++ E A A + +L G+ VE F
Sbjct: 231 GRSAAFPLAQNVHHNGILALTIVPAPAADTARVEE-AQQAAVRIADTLGYVGVLCVEFFV 289
Query: 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLG 196
+G + NE+APRPHNSGH+T+++C TSQFEQ +RA+ +PLG+P +PAA M N+LG
Sbjct: 290 LEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPRQHSPAA-MLNILG 348
Query: 197 EAEGERGFYLAHQLI--GKALSIPGATVHWYDKPEMRQQRKMGHITIV 242
+ G ++P A +H Y K E R RKMGH+
Sbjct: 349 DVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKMGHVNFT 396
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 10/233 (4%)
Query: 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78
P ++K+ RL YDG+G + +E A +LGG +EK P E++ ++ RG +
Sbjct: 173 PGILKTARLGYDGKGQVRVATAQEARDAYGSLGGVP--CVLEKRLPLKYEVSALIARGAN 230
Query: 79 KSILCYPVVETIHKENICH--IVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136
+ +P+ + H I +V APAA + + A A + SL+ G+ VE F
Sbjct: 231 GASAVFPLAQNTHHGGILSLSVVPAPAASDALVRD-AQQAAARIADSLDYVGVLCVEFFV 289
Query: 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLG 196
+G ++ NE+APRPHNSGH+T+++C TSQFEQ +RA+ LPLG +PAA M N+LG
Sbjct: 290 LEDGSLVANEMAPRPHNSGHYTVDACETSQFEQQVRAMTRLPLGSTRQHSPAA-MLNVLG 348
Query: 197 E---AEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSM 246
+ A G G + + ++P A +H Y K E R RKMGH+ +++
Sbjct: 349 DVWFASGASGEPVTPPW-DQVAAMPTARLHLYGKEEARVGRKMGHVNFTAATL 400
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|B Chain B, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|C Chain C, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|D Chain D, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
Length = 174
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 92/159 (57%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
PR+G+IMGSDSD PVM DAA L F +P EVR+VSAHRTP+ MFSYA A R
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXXX 390
HLPGMVAA TPLPVIGVPV IVQMP GVP
Sbjct: 68 AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNA 127
Query: 391 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429
GLLAVRMLG + LRAR+ + + + D V K +LQ+
Sbjct: 128 GLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQR 166
>pdb|2Z04|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
pdb|2Z04|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Atpase Subunit From Aquifex Aeolicus
Length = 365
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 14/234 (5%)
Query: 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAV 71
A K F P+++K+++L YDG+G K E+ + + + +E++ F E++
Sbjct: 121 ALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVKFEAEISC 179
Query: 72 IVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFA 131
I VR R+ YP H+E I P A K+ E A ++ + L+ G+F
Sbjct: 180 IGVRDREGKTYFYPQPFNKHEEGILIYNYVPYA---KLKE-AEEITKRLXELLDIVGVFT 235
Query: 132 VELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIM 191
VE F +G++L+NE APR HN+GH T++ YTSQFE +RA+ PLG +K P+ +
Sbjct: 236 VEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTSQFENLLRAITEXPLGSTELKLPSGXV 295
Query: 192 YNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSS 245
N+LG++ E + + LS+ GA ++WY K E + +RK+GH+ +VG S
Sbjct: 296 -NILGKSYEEIP-------LKEILSVEGAKLYWYGK-EKKPRRKVGHVNVVGRS 340
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 12/240 (5%)
Query: 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA 70
+A + GYP +VK++ YDG+G + +E++L + + EK+ KE++
Sbjct: 139 KAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVS 196
Query: 71 VIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIF 130
+ V RG + I +P+ E H+ I PA + K +E A + +K + S+ G F
Sbjct: 197 LTVTRGNNNQITFFPLQENEHRNQILFKTIVPARID-KTAE-AKEQVNKIIQSIHFIGTF 254
Query: 131 AVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAI 190
VE F +N Q+ +NE+APRPHNSGH++IE+C SQF+ H+ AV G L + A+
Sbjct: 255 TVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAV 314
Query: 191 MYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVE 250
NLLG + L + P +H Y K E + RK GH T++ + + E
Sbjct: 315 XXNLLG-----KDLDLLENEFNEH---PEWHLHIYGKSERKDSRKXGHXTVLTNDVNQTE 366
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXXX 332
+G+IMGS SD MK A IL ++P+E ++VSAHRTPD MF YA +A ER
Sbjct: 14 VGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 73
Query: 333 XXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXX--XXXXXXX 390
HLPGMVAA+T LPVIGVPV+ IVQMP GVP
Sbjct: 74 AGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNA 133
Query: 391 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKD 430
GLLA ++LG + +D+ D + + E ++KD
Sbjct: 134 GLLAAQILG-----------SFHDDIHDALELRREAIEKD 162
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXXX 332
+G+IMGS SD MK A IL ++P+E ++VSAHRTPD MF YA +A ER
Sbjct: 25 VGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 84
Query: 333 XXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXX--XXXXXXX 390
HLPGMVAA+T LPVIGVPV+ IVQMP GVP
Sbjct: 85 AGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNA 144
Query: 391 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKD 430
GLLA ++LG + +D+ D + + E ++KD
Sbjct: 145 GLLAAQILG-----------SFHDDIHDALELRREAIEKD 173
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|E Chain E, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|F Chain F, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|G Chain G, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|H Chain H, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
Length = 163
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 9/158 (5%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
++ +IMGS SD +M+++ +L F +P+E ++VSAHRTP +M +AS A ER
Sbjct: 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIA 64
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPX--XXXXXXXXXX 389
HLPGMVA+ T LPVIGVP+ IVQMP G+P
Sbjct: 65 GAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKN 124
Query: 390 XGLLAVRMLGFGDADLRARMQQY-------MEDMRDDV 420
G+LA RML + L ++ QY +EDM++++
Sbjct: 125 AGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNEL 162
>pdb|1B6R|A Chain A, N5-Carboxyaminoimidazole Ribonucleotide Synthetase From E.
Coli
pdb|3ETH|A Chain A, Crystal Structure Of E. Coli Purk In Complex With Mgatp
pdb|3ETH|B Chain B, Crystal Structure Of E. Coli Purk In Complex With Mgatp
pdb|3ETJ|A Chain A, Crystal Structure E. Coli Purk In Complex With Mg, Adp,
And Pi
pdb|3ETJ|B Chain B, Crystal Structure E. Coli Purk In Complex With Mg, Adp,
And Pi
Length = 355
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 21 MVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80
+VK + YDGRG ++ E G VE+ F E++++ RG D S
Sbjct: 118 IVKRRTGGYDGRGQWRLRANETEQLPAECYGE----CIVEQGINFSGEVSLVGARGFDGS 173
Query: 81 ILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNG 140
+ YP+ +H++ I A + A ++ + L G+ A+E F T G
Sbjct: 174 TVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQG 233
Query: 141 QILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG 200
+L+NE+APR HNSGH T SQFE H+RA+ LPL P + P ++M NL+G
Sbjct: 234 -LLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNP-SVMINLIGS--- 288
Query: 201 ERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLL 257
+ L +P +HWYDK E+R RK+GH+ + S + + L +L+
Sbjct: 289 --------DVNYDWLKLPLVHLHWYDK-EVRPGRKVGHLNLTDSDTSRLTATLEALI 336
>pdb|1B6S|A Chain A, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|B Chain B, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|C Chain C, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|D Chain D, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
Length = 355
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 21 MVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80
+VK + YDGRG ++ E G VE+ F E++++ RG D S
Sbjct: 118 IVKRRTGGYDGRGQWRLRANETEQLPAECYGE----CIVEQGINFSGEVSLVGARGFDGS 173
Query: 81 ILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNG 140
+ YP+ +H++ I A + A ++ + L G+ A+E F T G
Sbjct: 174 TVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQG 233
Query: 141 QILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG 200
+L+NE+APR HNSGH T SQFE H+RA+ LPL P + P ++M NL+G
Sbjct: 234 -LLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNP-SVMINLIGS--- 288
Query: 201 ERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLL 257
+ L +P +HWYDK E+R RK+GH+ + S + + L +L+
Sbjct: 289 --------DVNYDWLKLPLVHLHWYDK-EVRPGRKVGHLNLTDSDTSRLTATLEALI 336
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|C Chain C, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|D Chain D, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
Length = 173
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 64/108 (59%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +G++MGS SD VMK A IL F VP+E ++VSAHR PD MF YA A ER
Sbjct: 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAII 72
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM+AA+T +PV+GVPV IVQMP+GVP
Sbjct: 73 AGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVP 120
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair
Length = 169
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
R+ I+MGS SD M+ AA+I + +VPH V +VSA+RTPD +FS+A SA E
Sbjct: 9 RVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIA 68
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM+AA+T +PV+GVPV+ IVQMPRG+P
Sbjct: 69 GAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIP 115
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air
pdb|2NSJ|A Chain A, E. Coli Pure H45q Mutant Complexed With Cair
Length = 169
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 65/107 (60%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
R+ I+MGS SD M+ AA+I + +VPH V +VSA RTPD +FS+A SA E
Sbjct: 9 RVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIA 68
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM+AA+T +PV+GVPV+ IVQMPRG+P
Sbjct: 69 GAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIP 115
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FW1|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FWJ|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
pdb|2FWJ|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
Length = 183
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 60/108 (55%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
pdb|1U11|B Chain B, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
Length = 182
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 60/108 (55%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ER
Sbjct: 22 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 81
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 82 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 129
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
pdb|2FWA|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
Length = 183
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 60/108 (55%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
+LPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAANLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW6|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW7|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW7|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWP|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
pdb|2FWP|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
Length = 183
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 60/108 (55%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSA+RTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair
Length = 169
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
R+ I+ GS SD + AA+I + +VPH V +VSAHRTPD +FS+A SA E
Sbjct: 9 RVAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIA 68
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPG +AA+T +PV+GVPV+ IVQ PRG+P
Sbjct: 69 GAGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIP 115
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|B Chain B, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|C Chain C, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|D Chain D, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|L Chain L, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|M Chain M, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|N Chain N, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|O Chain O, Crystal Structure Of E. Coli Pure-Mononucleotide Complex
Length = 161
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
R+ I+ GS SD + AA+I + +VPH V +VSAHRTPD +FS+A SA E
Sbjct: 3 RVAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIA 62
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPG +AA+T +PV+GVPV+ IVQ PRG+P
Sbjct: 63 GAGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIP 109
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That
Catalyzes The Conversion Of N5-carboxyaminoimidazole
Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole
Ribonucleotide (cair) In The Purine Biosynthetic Pathway
Length = 169
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
R+ I+ GS SD + AA+I + +VPH V +VSAHRTPD +FS+A SA E
Sbjct: 9 RVAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIA 68
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPG +AA+T +PV+GVPV+ IVQ PRG+P
Sbjct: 69 GAGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIP 115
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
pdb|2FWI|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
Length = 183
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 59/108 (54%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSA RTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 59/108 (54%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
LPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAFLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW9|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 59/108 (54%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSA RTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW8|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 59/108 (54%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXX 330
P +GIIMGS SD M+ A +LT +PHE IVSAHRTPD + YA +A ER
Sbjct: 23 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 82
Query: 331 XXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
LPGM AA T LPV+GVPV IVQMP GVP
Sbjct: 83 AGAGGAAGLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVP 130
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|B Chain B, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|C Chain C, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|D Chain D, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|E Chain E, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|F Chain F, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|G Chain G, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|H Chain H, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 166
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 57/107 (53%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
++G+I GS SD K+ IL + +E +VSAHRTPD F YA +A ER
Sbjct: 7 QVGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIA 66
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPG VAA+T LPV+GVPV+ IVQ P G+P
Sbjct: 67 GAGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIP 113
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|B Chain B, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|C Chain C, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|D Chain D, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|E Chain E, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|F Chain F, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|G Chain G, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|H Chain H, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure
Length = 163
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 57/107 (53%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
++G+I GS SD K+ IL + +E +VSAHRTPD F YA +A ER
Sbjct: 4 QVGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIA 63
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HLPG VAA+T LPV+GVPV+ IVQ P G+P
Sbjct: 64 GAGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIP 110
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|B Chain B, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|C Chain C, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|D Chain D, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
Length = 174
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXX 331
+I I+ GS SD + AA +LT +VP V +VSAHRTPD +FS+A A
Sbjct: 14 KIAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIA 73
Query: 332 XXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXXXG 391
HLPG +AA+T +PV+GVPV+ IVQ PRG+P
Sbjct: 74 GNGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIPVGTLAIGKAGAAN 133
Query: 392 LLAVRMLGFG--DADLRARMQQYMEDMRDDVL 421
+ D +L R+ + + DDVL
Sbjct: 134 AALLAAQILALHDTELAGRLAHWRQSQTDDVL 165
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXXX 332
I IIMGS+SDL + + A IL F V EVR+ SAHRTP+L+ ++
Sbjct: 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSK---ADVFIAI 58
Query: 333 XXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXXXGL 392
HLPG+VA+ T PVI VPV VQMP G+P +
Sbjct: 59 AGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSS-VQMPPGIPVATVGIDRGENAAI 117
Query: 393 LAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429
LA+ +L D ++ ++ +Y E M+ V EK+++
Sbjct: 118 LALEILALKDENIAKKLIEYREKMKKKVYASDEKVKE 154
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 13/238 (5%)
Query: 5 DLESAWR-AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-ALGGFDRG---LYV 59
D ES +R A GYP +VK ++ G+G +S E+L+ A A G G + V
Sbjct: 136 DSESLFREAVADIGYPCIVKPV-MSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIV 194
Query: 60 EKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHK 119
E F E+ ++ V D C PV + + P + E A ++A K
Sbjct: 195 EGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMSPLAL-ERAQEIARK 253
Query: 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPL 179
V +L G G+F VELF + +++ +EV+PRPH++G T+ S S+F H+RA +GLP+
Sbjct: 254 VVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPV 312
Query: 180 GDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237
G PAA L F +G L I + KPE+ R++G
Sbjct: 313 GGIRQYGPAASAVILPQLTSQNVTFDNVQNAVGADLQI-----RLFGKPEIDGSRRLG 365
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 13/238 (5%)
Query: 5 DLESAWR-AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-ALGGFDRG---LYV 59
D ES +R A GYP +VK ++ G+G +S E+L+ A A G G + V
Sbjct: 135 DSESLFREAVADIGYPCIVKPV-MSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIV 193
Query: 60 EKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHK 119
E F E+ ++ V D C PV + + P + E A ++A K
Sbjct: 194 EGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMSPLAL-ERAQEIARK 252
Query: 120 AVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPL 179
V +L G G+F VELF + +++ +EV+PRPH++G T+ S S+F H+RA +GLP+
Sbjct: 253 VVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPV 311
Query: 180 GDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237
G PAA L F +G L I + KPE+ R++G
Sbjct: 312 GGIRQYGPAASAVILPQLTSQNVTFDNVQNAVGADLQI-----RLFGKPEIDGSRRLG 364
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 116/258 (44%), Gaps = 30/258 (11%)
Query: 1 MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEEL----SSAITALGGFDRG 56
M L+ + A ++ GYP K+ ++ G+G+ K E++ A T G
Sbjct: 140 MYATTLDELYEACEKIGYPCHTKAI-MSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEK 198
Query: 57 LYVEKWAPFVKELAVIVVRGRDKS---ILCYPV-VETIHKENICHIVKAPAAVPWKISEL 112
+ VE+ F E+ + VR D++ + +P V + H PA + K
Sbjct: 199 IIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAERE 258
Query: 113 ATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYT--SQFEQH 170
+A + L G GIF VE+F ++ NEV+PRPH++G T+ S S+F H
Sbjct: 259 VYRIAKRITDVLGGLGIFGVEMF-VKGDKVWANEVSPRPHDTGMVTLASHPPGFSEFALH 317
Query: 171 MRAVVGLPLGDP--------SMKTPAA---IMYNLLGEAEGERGFYLAHQLIGKALSIPG 219
+RAV+GLP+ M PAA I + G + RG KALS+P
Sbjct: 318 LRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFRGLV-------KALSVPN 370
Query: 220 ATVHWYDKPEMRQQRKMG 237
ATV + KPE R++G
Sbjct: 371 ATVRLFGKPEAYVGRRLG 388
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|B Chain B, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|C Chain C, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|D Chain D, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|E Chain E, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|F Chain F, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|G Chain G, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|H Chain H, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|I Chain I, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|J Chain J, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|K Chain K, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|L Chain L, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|M Chain M, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|N Chain N, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|O Chain O, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|P Chain P, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 46/106 (43%)
Query: 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERXXXXXXXX 332
+ I+ GSDSDL + A L +P E I+SAHRTP + +A R
Sbjct: 9 VAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAA 68
Query: 333 XXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVP 378
HL G +AA T PVIGVP VQ P GVP
Sbjct: 69 AGLAAHLAGTIAAHTLKPVIGVPXAGGSLGGLDALLSTVQXPGGVP 114
>pdb|3SE7|A Chain A, Ancient Vana
pdb|3SE7|B Chain B, Ancient Vana
pdb|3SE7|C Chain C, Ancient Vana
pdb|3SE7|D Chain D, Ancient Vana
pdb|3SE7|E Chain E, Ancient Vana
pdb|3SE7|F Chain F, Ancient Vana
Length = 346
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIV- 73
Q YP+ VK R + VA+ EE+L A+ A +D + +E+ A E+ V
Sbjct: 163 QLTYPVFVKPARSGSSFGVSKVAR-EEDLQGAVEAAREYDSKVLIEE-AVIGTEIGCAVM 220
Query: 74 ------VRGRDKSILCYPVVETIHKENI------CHIVKAPAAVPWKISELATDVAHKAV 121
+ G I IH+E+ V PA + L D A
Sbjct: 221 GNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVY 280
Query: 122 SSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
+L G+ V+LF T +G+++LNEV P
Sbjct: 281 RALGCRGLSRVDLFLTEDGKVVLNEVNTFP 310
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE 301
V + V R+ LLK +S C R+ ++ GS SDL + K F +P E
Sbjct: 245 VKKNFEWVAERVELLLKSESQ-C-------RVVVLXGSTSDLGHCEKIKKACGNFGIPCE 296
Query: 302 VRIVSAHRTPD 312
+R+ SAH+ PD
Sbjct: 297 LRVTSAHKGPD 307
>pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
Length = 367
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVV 74
F +P +VK A G V K E+EL A+ + + + + +E + VKE +
Sbjct: 183 NFNFPFIVKPSN-AGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYN--LA 239
Query: 75 RGRDKSILCYPVVETIHKENICHIV---------KAP-AAVPWKISELATDVAHKAVSSL 124
+ K C+ +E +K+ KAP A++ + E + K S L
Sbjct: 240 GCKIKKDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDL 299
Query: 125 EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTS 165
I + F N ++ LNE+ P P + ++ + T+
Sbjct: 300 FDGAIIRCDFFVIEN-EVYLNEINPIPGSLANYLFDDFKTT 339
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 15 QFGYPLMVKSKRLAYDGRGNAVAK--SEEELSSAITALGGFDRGLYVEKWAPFVKELAVI 72
+ G PL VK A G V+K +E + A+ FD + VE+ + +
Sbjct: 177 RLGLPLFVKP---ANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAV 233
Query: 73 VVRGRDKSILCYPVV--------ETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSL 124
+ ++ C +V +T + ++ V PA +P ++++ +A +A +L
Sbjct: 234 LGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTL 293
Query: 125 EGAGIFAVELFWTNNGQILLNEVAPRP 151
AG+ V++F T + ++++NE+ P
Sbjct: 294 GCAGMARVDVFLTADNEVVINEINTLP 320
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 16 FGYPLMVKSKRLAYDGRGNAVAK--SEEELSSAITALGGFDRGLYVEK-------WAPFV 66
F YP+ VK R G V K S +EL AI + +D + +E+ +
Sbjct: 164 FTYPVFVKPAR---SGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVL 220
Query: 67 KELAVIVVRGRDKSILCYPVVETIHKE------NICHIVKAPAAVPWKISELATDVAHKA 120
A +VV D+ L Y + IH+E + ++ PA + + + K
Sbjct: 221 GNSAALVVGEVDQIRLQYGIFR-IHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKI 279
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
+L G+ V++F +NG+I+LNEV P
Sbjct: 280 YKTLGCRGLARVDMFLQDNGRIVLNEVNTLP 310
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 35/169 (20%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAK-----SEEELSSAITALGGFDRGL- 57
D E A R + FGYP+++K G +AK + E L LGGF L
Sbjct: 110 TDREEALRLMEAFGYPVVLKP---VIGSWGRLLAKVTDRAAAEALLEHKEVLGGFQHQLF 166
Query: 58 ----YVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELA 113
YVEK +++ V VV R + I++ + I + L
Sbjct: 167 YIQEYVEKPG---RDIRVFVVGER--------AIAAIYRRSAHWITNTARGGQAENCPLT 215
Query: 114 TDVAHKAVSSLE--GAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160
++A +V + E G G+ AV+LF + G +L+NEV +HT+E
Sbjct: 216 EEIARLSVGAAEAVGGGVVAVDLFESERG-LLVNEV--------NHTME 255
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 16 FGYPLMVKSKRLAYDGRGNAVAK--SEEELSSAITALGGFDRGLYVEK-------WAPFV 66
F YP+ VK R G V K S +EL AI + +D + +E+ +
Sbjct: 164 FTYPVFVKPAR---SGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVL 220
Query: 67 KELAVIVVRGRDKSILCYPVVETIHKE------NICHIVKAPAAVPWKISELATDVAHKA 120
A +VV D+ L Y + IH+E + ++ PA + + + K
Sbjct: 221 GNSAALVVGEVDQIRLQYGIFR-IHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKI 279
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
+L G+ V++F + G+I+LNEV P
Sbjct: 280 YKTLGCRGLARVDMFLQDRGRIVLNEVNTLP 310
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 6/161 (3%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS--SAHERXXXX 328
P + I+MGS SD+ + A L F + + +RI SAH+T + + S A +R
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 329 XXXXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXX 388
L G V I P + +MP G+
Sbjct: 63 ITIAGRSNA-LSGFVDGFVKGATIACPPPSDSFAGADIYSSL-RMPSGI--SPALVLEPK 118
Query: 389 XXGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429
LLA R+ D ++ ++ YME ++ KL++
Sbjct: 119 NAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 6/161 (3%)
Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS--SAHERXXXX 328
P + I+MGS SD+ + A L F + + +RI SAH+T + + S A +R
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 329 XXXXXXXXXHLPGMVAARTPLPVIGVPVRXXXXXXXXXXXXIVQMPRGVPXXXXXXXXXX 388
L G V I P + +MP G+
Sbjct: 63 ITIAGRSNA-LSGFVDGFVKGATIACPPPSDSFAGADIYSSL-RMPSGI--SPALVLEPK 118
Query: 389 XXGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429
LLA R+ D ++ ++ YME ++ KL++
Sbjct: 119 NAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 198 AEGERGFYLAHQLIGKALSIPGATVHWYDKPEM 230
AE +RGF LA +++G+A + G Y +P+M
Sbjct: 376 AESDRGFSLAQKMVGRACGVKGIRPGAYCEPKM 408
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG--LYVE 60
V D++ A ++ G+PLM+K+ G+G A+S E+ + G +++
Sbjct: 224 VKDVDEGLEAAERIGFPLMIKASE-GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLM 282
Query: 61 KWAPFVKELAV-IVVRGRDKSILCYPVVETIHKENICHIVKAPAAV-PWKISELATDVAH 118
K A + L V I+ ++ + +I + + + +APA + P I E A
Sbjct: 283 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 342
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150
+ ++ VE ++ +G E+ PR
Sbjct: 343 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 374
>pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 386
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
PA + + + +A +A +L AG+ V++F +G+I++NEV P
Sbjct: 290 PADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLP 339
>pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From
Xanthomonas Oryzae Pathovar Oryzae With Adp
pdb|3R5F|A Chain A, Crystal Structure Of D-Alanine-D-Alnine Ligase From
Xanthomonas Oryzae Pv. Oryzae With Atp
Length = 384
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151
PA + + + +A +A +L AG+ V++F +G+I++NEV P
Sbjct: 288 PADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLP 337
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT---ALGGFDRGL--- 57
D E A R + FGYP+++K ++ GR A LGGF L
Sbjct: 110 TDREEALRLMEAFGYPVVLKPVIGSW-GRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYI 168
Query: 58 --YVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATD 115
YVEK +++ V VV R + I++ + I + L +
Sbjct: 169 QEYVEKPG---RDIRVFVVGER--------AIAAIYRRSAHWITNTARGGQAENCPLTEE 217
Query: 116 VAHKAVSSLE--GAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160
VA +V + E G G+ AV+LF + G +L+NEV +HT+E
Sbjct: 218 VARLSVKAAEAVGGGVVAVDLFESERG-LLVNEV--------NHTME 255
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG--LYVE 60
V D++ A ++ G+PLM+K+ G+G A+S E+ + G +++
Sbjct: 230 VKDVDEGLEAAERIGFPLMIKASE-GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLM 288
Query: 61 KWAPFVKELAV-IVVRGRDKSILCYPVVETIHKENICHIVKAPAAV-PWKISELATDVAH 118
K A + L V I+ ++ + +I + + + +APA + P I E A
Sbjct: 289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 348
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150
+ ++ VE ++ +G E+ PR
Sbjct: 349 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 380
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG--LYVE 60
V D++ A ++ G+PLM+K+ G+G A+S E+ + G +++
Sbjct: 230 VKDVDEGLEAAERIGFPLMIKASE-GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLM 288
Query: 61 KWAPFVKELAV-IVVRGRDKSILCYPVVETIHKENICHIVKAPAAV-PWKISELATDVAH 118
K A + L V I+ ++ + +I + + + +APA + P I E A
Sbjct: 289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 348
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150
+ ++ VE ++ +G E+ PR
Sbjct: 349 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 380
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRG--LYVE 60
V D++ A ++ G+PLM+K+ G+G A+S E+ + G +++
Sbjct: 214 VKDVDEGLEAAERIGFPLMIKASE-GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLM 272
Query: 61 KWAPFVKELAV-IVVRGRDKSILCYPVVETIHKENICHIVKAPAAV-PWKISELATDVAH 118
K A + L V I+ ++ + +I + + + +APA + P I E A
Sbjct: 273 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 332
Query: 119 KAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150
+ ++ VE ++ +G E+ PR
Sbjct: 333 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 364
>pdb|3MBW|A Chain A, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 330
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 202 RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
+GFYLA Q IG +++ V++ PE+ Q TI GS
Sbjct: 180 KGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGS 222
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 202 RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
+GFYLA Q IG +++ V++ PE+ Q TI GS
Sbjct: 150 KGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGS 192
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 322
P++ D L S P E+ VS+ R+ D MF Y +H
Sbjct: 46 PILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESH 84
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 202 RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
+GFYLA Q IG +++ V++ PE+ Q TI GS
Sbjct: 178 KGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGS 220
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 202 RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
+GFYLA Q IG +++ V++ PE+ Q TI GS
Sbjct: 181 KGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGS 223
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 31/167 (18%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGR---GNAVAKSEEELSSAITALGGFDRGL--- 57
D E A R + FGYP+++K ++ GR LGGF L
Sbjct: 110 TDREEALRLMEAFGYPVVLKPVIGSW-GRLXXXXXXXXXXXXXXXXKEVLGGFQHQLFYI 168
Query: 58 --YVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATD 115
YVEK +++ V VV R + I++ + I + L +
Sbjct: 169 QEYVEKPG---RDIRVFVVGER--------AIAAIYRRSAHWITNTARGGQAENCPLTEE 217
Query: 116 VAHKAVSSLE--GAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160
VA +V + E G G+ AV+LF + G +L+NEV +HT+E
Sbjct: 218 VARLSVKAAEAVGGGVVAVDLFESERG-LLVNEV--------NHTME 255
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 202 RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGS 244
+GFYLA Q IG +++ V++ PE+ Q TI GS
Sbjct: 178 KGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGS 220
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 5 DLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT 48
D+E+A +Q G P+++K+ LA G+G VA ++EE +A+
Sbjct: 130 DVEAALAYVRQKGAPIVIKADGLAA-GKGVIVAXTQEEAETAVN 172
>pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
pdb|4FU0|B Chain B, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
Length = 357
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161
PA + + + + A +L +G V++F+T +G+I+ NEV P + H +
Sbjct: 268 PARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPN 327
Query: 162 CYTS---QFEQHMRAVVGL 177
F Q + ++GL
Sbjct: 328 MMKGIGLSFSQMLDKLIGL 346
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid
Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid
Domain
Length = 150
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAI 47
N ++ WR G Q P++ K+ R+ GNA+ EE L S I
Sbjct: 35 NLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAI---EELLRSVI 75
>pdb|1OO2|A Chain A, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|B Chain B, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|C Chain C, Crystal Structure Of Transthyretin From Sparus Aurata
pdb|1OO2|D Chain D, Crystal Structure Of Transthyretin From Sparus Aurata
Length = 119
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 127 AGIFAVEL----FWTNNGQILLNEVA-----PRPHNSGHHTIESCYTSQFEQHMRAVV 175
AG++ VE +WTN G +EVA P GH+T+ + S F AVV
Sbjct: 58 AGVYRVEFDTKAYWTNQGSTPFHEVAEVVFDAHPEGHGHYTL-ALLLSPFSYTTTAVV 114
>pdb|3BN4|A Chain A, Carboxysome Subunit, Ccmk1
pdb|3BN4|B Chain B, Carboxysome Subunit, Ccmk1
pdb|3BN4|C Chain C, Carboxysome Subunit, Ccmk1
pdb|3BN4|D Chain D, Carboxysome Subunit, Ccmk1
pdb|3BN4|E Chain E, Carboxysome Subunit, Ccmk1
pdb|3BN4|F Chain F, Carboxysome Subunit, Ccmk1
Length = 122
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAA 189
N G++L N + RPH + + + YT EQ R +V +PS+ AA
Sbjct: 67 VNGGEVLSNHIIARPHENLEYVLPIRYTEAVEQ-FREIV-----NPSIIRRAA 113
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-----ALGGFDRG-L 57
+D+ + GYP+M+K+ GRG V +SE +L+ +T A+ F + +
Sbjct: 158 DDMAEVAKMAAAIGYPVMLKAS-WGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEV 216
Query: 58 YVEK 61
Y+EK
Sbjct: 217 YLEK 220
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAIT-----ALGGFDRG-L 57
+D+ + GYP+M+K+ GRG V +SE +L+ +T A+ F + +
Sbjct: 158 DDMAEVAKMAAAIGYPVMLKAS-WGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEV 216
Query: 58 YVEK 61
Y+EK
Sbjct: 217 YLEK 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,825,849
Number of Sequences: 62578
Number of extensions: 456538
Number of successful extensions: 1104
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 81
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)