Query 013695
Match_columns 438
No_of_seqs 404 out of 3355
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02948 phosphoribosylaminoim 100.0 1.7E-85 3.7E-90 692.3 55.0 434 3-436 142-576 (577)
2 COG0041 PurE Phosphoribosylcar 100.0 1.4E-51 3E-56 348.1 18.3 157 272-428 4-160 (162)
3 TIGR01162 purE phosphoribosyla 100.0 4.4E-49 9.5E-54 340.9 18.3 155 273-427 1-155 (156)
4 PF00731 AIRC: AIR carboxylase 100.0 3E-45 6.5E-50 317.3 14.2 150 271-420 1-150 (150)
5 COG0026 PurK Phosphoribosylami 100.0 5.8E-43 1.3E-47 338.6 29.9 248 2-258 119-366 (375)
6 PRK06019 phosphoribosylaminoim 100.0 9.3E-42 2E-46 345.0 31.9 247 2-258 120-366 (372)
7 PLN02735 carbamoyl-phosphate s 100.0 1.8E-40 3.9E-45 371.9 33.3 357 2-398 722-1088(1102)
8 PRK12815 carB carbamoyl phosph 100.0 1.5E-39 3.3E-44 365.6 34.8 357 2-399 690-1053(1068)
9 TIGR01161 purK phosphoribosyla 100.0 1.9E-38 4E-43 319.0 30.6 235 2-245 118-352 (352)
10 TIGR01369 CPSaseII_lrg carbamo 100.0 3.2E-38 6.8E-43 354.8 33.8 340 2-381 689-1038(1050)
11 PRK05294 carB carbamoyl phosph 100.0 1.4E-37 3E-42 350.7 34.7 352 2-395 689-1049(1066)
12 TIGR01142 purT phosphoribosylg 100.0 6.7E-36 1.5E-40 303.4 32.3 253 2-261 121-378 (380)
13 COG0027 PurT Formate-dependent 100.0 4.1E-36 9E-41 281.5 24.5 252 3-261 135-391 (394)
14 PRK09288 purT phosphoribosylgl 100.0 1.8E-34 4E-39 294.4 32.6 253 2-261 134-391 (395)
15 PF02222 ATP-grasp: ATP-grasp 100.0 1.2E-32 2.7E-37 247.1 20.7 159 2-162 13-172 (172)
16 KOG0370 Multifunctional pyrimi 100.0 3.6E-31 7.9E-36 275.1 23.6 334 2-381 1053-1393(1435)
17 TIGR00514 accC acetyl-CoA carb 100.0 4.6E-29 1E-33 258.6 30.0 285 3-303 138-439 (449)
18 PRK05586 biotin carboxylase; V 100.0 4.2E-29 9.1E-34 258.7 28.8 278 2-296 137-432 (447)
19 PRK12815 carB carbamoyl phosph 100.0 1.1E-29 2.5E-34 285.9 23.8 243 2-258 148-401 (1068)
20 PRK08654 pyruvate carboxylase 100.0 8.5E-29 1.8E-33 258.2 28.6 287 3-306 138-441 (499)
21 PRK07178 pyruvate carboxylase 100.0 2.1E-28 4.6E-33 254.7 30.0 286 3-304 137-439 (472)
22 PRK12833 acetyl-CoA carboxylas 100.0 1.5E-28 3.3E-33 255.5 28.5 286 2-303 140-442 (467)
23 PRK05294 carB carbamoyl phosph 100.0 3.8E-29 8.2E-34 282.4 24.3 241 2-258 148-402 (1066)
24 PF02786 CPSase_L_D2: Carbamoy 100.0 1.1E-28 2.3E-33 229.5 22.4 178 3-181 24-210 (211)
25 PRK08463 acetyl-CoA carboxylas 100.0 7.8E-28 1.7E-32 250.7 29.3 284 4-303 139-439 (478)
26 TIGR01369 CPSaseII_lrg carbamo 100.0 1.2E-28 2.5E-33 277.7 24.5 242 2-258 147-400 (1050)
27 PRK08591 acetyl-CoA carboxylas 100.0 1.3E-27 2.9E-32 248.0 29.7 286 2-303 137-439 (451)
28 KOG2835 Phosphoribosylamidoimi 100.0 2.6E-30 5.6E-35 249.6 5.9 366 57-436 3-372 (373)
29 PLN02735 carbamoyl-phosphate s 100.0 1.4E-27 3.1E-32 268.2 26.7 242 2-258 164-419 (1102)
30 PRK08462 biotin carboxylase; V 100.0 5.3E-27 1.1E-31 243.1 28.3 283 3-303 140-439 (445)
31 PRK13789 phosphoribosylamine-- 100.0 1.3E-26 2.8E-31 237.7 28.1 254 3-262 129-412 (426)
32 PRK06111 acetyl-CoA carboxylas 100.0 1.7E-26 3.8E-31 239.6 29.1 277 3-297 138-432 (450)
33 KOG0238 3-Methylcrotonyl-CoA c 100.0 4.8E-27 1E-31 232.1 22.9 282 3-300 134-433 (670)
34 PRK12999 pyruvate carboxylase; 100.0 1.7E-26 3.6E-31 259.5 29.6 286 3-305 142-452 (1146)
35 COG0439 AccC Biotin carboxylas 100.0 2.5E-26 5.4E-31 233.1 27.0 277 3-296 138-432 (449)
36 TIGR01235 pyruv_carbox pyruvat 99.9 3.2E-26 7E-31 256.0 28.0 286 3-305 138-448 (1143)
37 TIGR02712 urea_carbox urea car 99.9 2.1E-25 4.6E-30 251.9 31.4 346 3-380 136-502 (1201)
38 COG4770 Acetyl/propionyl-CoA c 99.9 2.4E-26 5.2E-31 230.7 20.6 278 3-297 138-433 (645)
39 PRK06395 phosphoribosylamine-- 99.9 2.1E-25 4.5E-30 229.4 27.5 253 3-261 127-408 (435)
40 PRK00885 phosphoribosylamine-- 99.9 2.6E-25 5.7E-30 228.8 26.3 251 2-262 122-404 (420)
41 PLN02257 phosphoribosylamine-- 99.9 1.7E-24 3.8E-29 222.2 29.5 257 2-262 122-411 (434)
42 COG1038 PycA Pyruvate carboxyl 99.9 6.4E-25 1.4E-29 226.4 24.9 286 3-304 144-453 (1149)
43 PRK13790 phosphoribosylamine-- 99.9 3.2E-24 6.8E-29 217.5 27.8 249 3-262 88-362 (379)
44 PRK07206 hypothetical protein; 99.9 2.5E-24 5.5E-29 221.2 27.5 248 3-258 129-406 (416)
45 PRK02186 argininosuccinate lya 99.9 4.7E-24 1E-28 237.4 28.5 252 3-262 128-394 (887)
46 TIGR00877 purD phosphoribosyla 99.9 9.2E-24 2E-28 217.5 27.7 255 2-262 124-408 (423)
47 COG0458 CarB Carbamoylphosphat 99.9 1.9E-24 4E-29 212.5 21.0 242 3-258 136-388 (400)
48 COG0151 PurD Phosphoribosylami 99.9 7.7E-24 1.7E-28 208.6 24.9 253 3-262 124-409 (428)
49 PRK06524 biotin carboxylase-li 99.9 1.4E-22 3.1E-27 206.8 22.8 176 3-181 165-357 (493)
50 COG1691 NCAIR mutase (PurE)-re 99.9 1.1E-23 2.3E-28 189.6 12.3 126 269-400 116-249 (254)
51 KOG0369 Pyruvate carboxylase [ 99.9 1.6E-21 3.5E-26 197.8 25.1 288 2-305 169-477 (1176)
52 PRK05784 phosphoribosylamine-- 99.9 2.9E-21 6.3E-26 200.5 26.7 252 3-260 131-429 (486)
53 PF13535 ATP-grasp_4: ATP-gras 99.9 1.7E-21 3.8E-26 177.0 17.1 148 2-154 24-182 (184)
54 PF07478 Dala_Dala_lig_C: D-al 99.9 1.2E-20 2.5E-25 175.0 20.7 157 9-178 25-193 (203)
55 PRK01966 ddl D-alanyl-alanine 99.9 9.3E-21 2E-25 189.1 19.1 157 9-180 154-321 (333)
56 PRK14570 D-alanyl-alanine synt 99.9 2.1E-20 4.5E-25 188.1 20.9 164 5-181 158-337 (364)
57 PRK14572 D-alanyl-alanine synt 99.9 2.2E-20 4.7E-25 187.4 19.6 163 5-179 159-334 (347)
58 PRK12767 carbamoyl phosphate s 99.9 8.3E-20 1.8E-24 181.6 22.2 166 3-182 132-300 (326)
59 PRK14568 vanB D-alanine--D-lac 99.8 2.7E-20 6E-25 186.4 18.3 157 13-181 161-331 (343)
60 KOG0370 Multifunctional pyrimi 99.8 5.4E-22 1.2E-26 207.2 5.5 243 2-258 518-769 (1435)
61 KOG0368 Acetyl-CoA carboxylase 99.8 3.7E-20 8.1E-25 200.0 18.8 257 3-261 225-516 (2196)
62 PF01071 GARS_A: Phosphoribosy 99.8 1.5E-19 3.2E-24 164.2 19.9 150 2-155 22-193 (194)
63 PRK14569 D-alanyl-alanine synt 99.8 9.9E-20 2.1E-24 178.8 18.1 137 12-152 125-266 (296)
64 PRK14571 D-alanyl-alanine synt 99.8 1.9E-19 4.1E-24 177.1 18.7 138 13-154 121-268 (299)
65 PRK01372 ddl D-alanine--D-alan 99.8 4E-19 8.7E-24 175.1 19.8 148 3-153 119-272 (304)
66 PRK14573 bifunctional D-alanyl 99.8 2.7E-19 5.8E-24 198.0 20.2 163 9-181 602-777 (809)
67 TIGR01205 D_ala_D_alaTIGR D-al 99.8 3.6E-19 7.7E-24 176.3 18.6 140 11-153 140-287 (315)
68 KOG0237 Glycinamide ribonucleo 99.8 7.7E-17 1.7E-21 162.5 22.2 328 2-357 128-496 (788)
69 PF15632 ATPgrasp_Ter: ATP-gra 99.8 2.5E-17 5.5E-22 161.8 18.3 166 2-182 127-311 (329)
70 PRK13278 purP 5-formaminoimida 99.7 5.2E-16 1.1E-20 154.8 18.4 136 15-152 147-313 (358)
71 PRK06849 hypothetical protein; 99.7 4.2E-16 9E-21 159.0 15.9 145 3-158 137-283 (389)
72 TIGR00768 rimK_fam alpha-L-glu 99.7 7.6E-16 1.7E-20 149.2 17.0 158 3-171 109-274 (277)
73 COG1181 DdlA D-alanine-D-alani 99.7 6.3E-16 1.4E-20 152.0 15.7 143 7-152 132-287 (317)
74 PF02655 ATP-grasp_3: ATP-gras 99.7 4.2E-16 9.2E-21 139.4 12.9 126 16-153 30-160 (161)
75 PRK13277 5-formaminoimidazole- 99.7 1.5E-15 3.3E-20 149.4 17.5 151 14-167 149-334 (366)
76 TIGR02144 LysX_arch Lysine bio 99.7 1.8E-15 3.9E-20 147.2 17.1 161 3-174 108-275 (280)
77 PRK10446 ribosomal protein S6 99.6 5.7E-15 1.2E-19 145.4 16.4 158 4-175 121-287 (300)
78 COG2232 Predicted ATP-dependen 99.6 1.2E-14 2.5E-19 138.5 14.9 217 17-261 149-373 (389)
79 PF08443 RimK: RimK-like ATP-g 99.5 1.2E-13 2.5E-18 127.0 14.7 158 3-172 24-188 (190)
80 PRK14016 cyanophycin synthetas 99.3 3E-11 6.5E-16 132.0 16.3 165 3-173 235-470 (727)
81 COG0189 RimK Glutathione synth 99.3 6.3E-11 1.4E-15 116.9 16.5 141 3-152 140-290 (318)
82 TIGR03103 trio_acet_GNAT GNAT- 99.3 4.1E-11 8.8E-16 126.9 14.7 147 3-156 318-527 (547)
83 TIGR01435 glu_cys_lig_rel glut 99.2 1.2E-10 2.6E-15 125.5 14.6 146 3-154 496-715 (737)
84 TIGR02068 cya_phycin_syn cyano 99.2 4.3E-10 9.2E-15 125.3 16.9 167 2-174 233-470 (864)
85 PRK02471 bifunctional glutamat 99.1 5.9E-10 1.3E-14 121.7 15.0 148 3-156 509-731 (752)
86 COG3919 Predicted ATP-grasp en 99.1 1.3E-10 2.8E-15 109.5 6.7 138 10-153 140-290 (415)
87 COG1821 Predicted ATP-utilizin 99.1 2.8E-10 6.1E-15 105.2 8.8 114 20-152 141-257 (307)
88 PLN02941 inositol-tetrakisphos 99.1 1.7E-09 3.6E-14 106.8 13.6 132 11-153 146-306 (328)
89 PRK05234 mgsA methylglyoxal sy 99.0 5E-09 1.1E-13 91.3 10.4 118 272-409 6-133 (142)
90 PRK12458 glutathione synthetas 99.0 1.2E-08 2.6E-13 102.0 14.4 154 4-173 148-320 (338)
91 cd00532 MGS-like MGS-like doma 98.9 1E-08 2.3E-13 85.9 8.9 94 275-381 3-104 (112)
92 cd01422 MGS Methylglyoxal synt 98.8 7.3E-09 1.6E-13 87.2 7.1 94 276-381 4-106 (115)
93 TIGR02291 rimK_rel_E_lig alpha 98.8 1.6E-07 3.4E-12 92.3 16.9 44 108-152 228-271 (317)
94 PF14398 ATPgrasp_YheCD: YheC/ 98.8 2.5E-07 5.4E-12 89.3 18.1 147 3-152 42-234 (262)
95 cd01424 MGS_CPS_II Methylglyox 98.8 4.7E-08 1E-12 81.6 9.1 94 275-381 4-100 (110)
96 cd01423 MGS_CPS_I_III Methylgl 98.6 7.2E-08 1.6E-12 81.3 7.0 94 275-381 4-106 (116)
97 TIGR01380 glut_syn glutathione 98.6 1.1E-06 2.4E-11 87.0 16.4 153 3-171 140-305 (312)
98 PRK05246 glutathione synthetas 98.6 8.1E-07 1.8E-11 88.2 15.1 154 3-173 141-308 (316)
99 TIGR01016 sucCoAbeta succinyl- 98.5 1.3E-06 2.8E-11 89.2 14.2 83 3-85 25-126 (386)
100 COG1759 5-formaminoimidazole-4 98.4 5.4E-06 1.2E-10 79.6 14.8 140 15-156 148-320 (361)
101 PRK00696 sucC succinyl-CoA syn 98.4 1.2E-05 2.5E-10 82.2 16.9 81 2-83 24-123 (388)
102 PF02955 GSH-S_ATP: Prokaryoti 98.3 4.1E-06 8.9E-11 75.4 10.6 134 4-151 19-162 (173)
103 PF14397 ATPgrasp_ST: Sugar-tr 98.3 3.8E-05 8.2E-10 75.1 17.1 146 3-151 58-258 (285)
104 smart00851 MGS MGS-like domain 98.0 9E-06 1.9E-10 65.3 5.2 83 286-381 2-90 (90)
105 PF02142 MGS: MGS-like domain 98.0 1.7E-06 3.6E-11 70.3 0.1 83 286-381 2-95 (95)
106 PF05770 Ins134_P3_kin: Inosit 97.8 7.9E-05 1.7E-09 73.0 9.0 130 14-152 135-290 (307)
107 PF02750 Synapsin_C: Synapsin, 97.7 0.0005 1.1E-08 62.1 10.7 125 16-150 49-177 (203)
108 PF03133 TTL: Tubulin-tyrosine 97.5 0.00071 1.5E-08 66.3 11.2 42 19-64 67-108 (292)
109 PRK14046 malate--CoA ligase su 97.4 0.0062 1.3E-07 62.2 16.1 82 3-84 25-124 (392)
110 PF13549 ATP-grasp_5: ATP-gras 97.3 0.0019 4.2E-08 60.6 10.7 85 2-86 31-131 (222)
111 PF06973 DUF1297: Domain of un 97.3 0.0059 1.3E-07 54.6 12.8 98 55-153 21-144 (188)
112 PLN02235 ATP citrate (pro-S)-l 97.2 0.021 4.5E-07 58.3 16.8 78 3-81 34-129 (423)
113 PF08442 ATP-grasp_2: ATP-gras 96.9 0.0076 1.7E-07 55.8 9.8 76 2-78 23-116 (202)
114 PLN00124 succinyl-CoA ligase [ 96.8 0.032 7E-07 57.4 14.9 74 2-77 51-151 (422)
115 COG0045 SucC Succinyl-CoA synt 96.8 0.0099 2.1E-07 59.3 10.1 78 2-80 24-117 (387)
116 PF14243 DUF4343: Domain of un 96.7 0.028 6.2E-07 48.2 11.2 120 18-157 2-121 (130)
117 PF14305 ATPgrasp_TupA: TupA-l 96.5 0.053 1.2E-06 51.6 13.2 45 106-154 177-221 (239)
118 PF11379 DUF3182: Protein of u 96.4 0.036 7.7E-07 54.4 10.8 91 1-93 118-213 (355)
119 cd08550 GlyDH-like Glycerol_de 95.5 0.049 1.1E-06 54.8 8.3 87 271-357 23-110 (349)
120 cd08170 GlyDH Glycerol dehydro 95.4 0.067 1.5E-06 53.9 8.9 87 271-357 23-110 (351)
121 PRK09423 gldA glycerol dehydro 94.5 0.17 3.7E-06 51.3 8.8 87 271-357 30-117 (366)
122 cd08551 Fe-ADH iron-containing 94.2 0.2 4.4E-06 50.8 8.7 87 271-357 24-131 (370)
123 cd08171 GlyDH-like2 Glycerol d 94.0 0.18 3.8E-06 50.8 7.7 87 271-357 23-111 (345)
124 PRK00843 egsA NAD(P)-dependent 93.8 0.29 6.3E-06 49.3 8.8 85 271-357 35-120 (350)
125 cd08195 DHQS Dehydroquinate sy 93.7 0.35 7.6E-06 48.6 9.3 141 271-412 25-193 (345)
126 KOG3895 Synaptic vesicle prote 93.7 0.066 1.4E-06 52.5 3.8 122 17-150 239-366 (488)
127 cd08549 G1PDH_related Glycerol 93.7 0.3 6.5E-06 48.8 8.8 86 271-357 25-113 (332)
128 PF13685 Fe-ADH_2: Iron-contai 93.6 0.054 1.2E-06 51.8 3.1 148 271-419 20-188 (250)
129 cd08175 G1PDH Glycerol-1-phosp 93.6 0.28 6E-06 49.3 8.2 86 271-357 24-113 (348)
130 cd08173 Gro1PDH Sn-glycerol-1- 93.5 0.4 8.8E-06 48.0 9.3 85 271-357 26-111 (339)
131 cd01421 IMPCH Inosine monophos 93.2 0.15 3.3E-06 46.2 5.1 63 275-352 4-68 (187)
132 cd08197 DOIS 2-deoxy-scyllo-in 93.0 0.56 1.2E-05 47.4 9.3 87 271-357 24-119 (355)
133 COG3199 Predicted inorganic po 92.8 1.2 2.6E-05 44.1 10.9 132 237-400 16-157 (355)
134 TIGR01357 aroB 3-dehydroquinat 92.7 0.68 1.5E-05 46.5 9.5 141 271-412 21-189 (344)
135 cd08183 Fe-ADH2 Iron-containin 92.7 0.43 9.3E-06 48.5 8.1 85 271-357 23-130 (374)
136 cd08177 MAR Maleylacetate redu 92.5 0.35 7.5E-06 48.5 7.2 86 271-357 24-110 (337)
137 cd08194 Fe-ADH6 Iron-containin 92.5 0.44 9.4E-06 48.5 7.9 87 271-357 24-131 (375)
138 cd01452 VWA_26S_proteasome_sub 92.3 2.7 5.9E-05 38.4 12.0 75 244-322 85-162 (187)
139 cd08193 HVD 5-hydroxyvalerate 92.1 0.43 9.3E-06 48.5 7.3 87 271-357 27-134 (376)
140 PRK00002 aroB 3-dehydroquinate 92.0 0.89 1.9E-05 45.9 9.4 87 271-357 32-127 (358)
141 cd08199 EEVS 2-epi-5-epi-valio 91.8 1 2.3E-05 45.4 9.6 87 271-357 27-123 (354)
142 cd07766 DHQ_Fe-ADH Dehydroquin 91.5 0.8 1.7E-05 45.6 8.4 86 271-357 24-113 (332)
143 cd08182 HEPD Hydroxyethylphosp 91.1 0.76 1.6E-05 46.6 7.9 85 271-357 24-132 (367)
144 cd08192 Fe-ADH7 Iron-containin 91.1 0.81 1.8E-05 46.4 8.1 87 271-357 25-136 (370)
145 cd08185 Fe-ADH1 Iron-containin 91.0 0.83 1.8E-05 46.5 8.1 87 271-357 26-139 (380)
146 PF14403 CP_ATPgrasp_2: Circul 90.8 0.99 2.2E-05 46.7 8.3 56 7-65 328-385 (445)
147 PF00465 Fe-ADH: Iron-containi 90.6 0.45 9.8E-06 48.1 5.7 87 271-357 22-130 (366)
148 cd08187 BDH Butanol dehydrogen 90.5 0.9 2E-05 46.3 7.8 87 271-357 29-137 (382)
149 cd08178 AAD_C C-terminal alcoh 90.3 0.84 1.8E-05 46.8 7.4 74 271-344 22-98 (398)
150 cd08189 Fe-ADH5 Iron-containin 90.1 1.2 2.6E-05 45.2 8.3 87 271-357 27-135 (374)
151 PLN02834 3-dehydroquinate synt 89.8 1.9 4.2E-05 44.7 9.5 87 271-357 101-198 (433)
152 cd08176 LPO Lactadehyde:propan 89.7 1.8 4E-05 44.0 9.3 87 271-357 29-136 (377)
153 KOG2157 Predicted tubulin-tyro 89.3 3.2 7E-05 43.5 10.7 48 17-65 199-251 (497)
154 cd08186 Fe-ADH8 Iron-containin 89.1 1.6 3.5E-05 44.5 8.3 87 271-357 27-136 (383)
155 KOG2156 Tubulin-tyrosine ligas 89.0 4 8.7E-05 42.5 10.8 52 4-64 291-343 (662)
156 cd08191 HHD 6-hydroxyhexanoate 88.9 1.4 3E-05 45.0 7.7 85 271-357 23-130 (386)
157 cd08172 GlyDH-like1 Glycerol d 88.5 0.91 2E-05 45.6 6.0 85 271-357 24-109 (347)
158 cd08179 NADPH_BDH NADPH-depend 88.0 2.2 4.7E-05 43.4 8.4 87 271-357 24-135 (375)
159 PRK10586 putative oxidoreducta 88.0 3.2 7E-05 42.0 9.5 84 271-357 35-119 (362)
160 cd08181 PPD-like 1,3-propanedi 87.9 2.4 5.2E-05 42.8 8.6 87 271-357 26-133 (357)
161 COG0371 GldA Glycerol dehydrog 87.6 1.7 3.6E-05 43.8 7.0 86 271-357 31-117 (360)
162 TIGR02638 lactal_redase lactal 87.4 1.9 4.2E-05 43.8 7.6 87 271-357 30-139 (379)
163 PRK10624 L-1,2-propanediol oxi 87.2 3.6 7.8E-05 41.9 9.5 87 271-357 31-140 (382)
164 cd08169 DHQ-like Dehydroquinat 87.2 3.4 7.3E-05 41.6 9.1 85 271-357 24-118 (344)
165 TIGR00355 purH phosphoribosyla 86.6 1.7 3.8E-05 45.4 6.7 46 275-333 4-49 (511)
166 cd08174 G1PDH-like Glycerol-1- 86.2 2.7 5.8E-05 41.9 7.7 80 271-357 26-108 (331)
167 PRK09860 putative alcohol dehy 85.7 2.5 5.4E-05 43.1 7.4 87 271-357 32-139 (383)
168 cd08190 HOT Hydroxyacid-oxoaci 85.1 4.8 0.0001 41.5 9.2 67 271-337 24-92 (414)
169 PRK00881 purH bifunctional pho 84.5 2 4.4E-05 45.1 6.0 49 271-333 5-53 (513)
170 PRK14021 bifunctional shikimat 84.4 8.1 0.00018 41.4 10.8 85 272-357 211-304 (542)
171 cd08188 Fe-ADH4 Iron-containin 84.2 3 6.4E-05 42.5 7.1 87 271-357 29-136 (377)
172 PRK15454 ethanol dehydrogenase 84.2 3.3 7.2E-05 42.4 7.5 67 271-337 50-118 (395)
173 PRK10481 hypothetical protein; 83.7 5.8 0.00013 37.3 8.2 81 270-353 129-211 (224)
174 PLN02891 IMP cyclohydrolase 83.2 1.9 4E-05 45.3 5.1 50 271-333 22-71 (547)
175 PRK01372 ddl D-alanine--D-alan 83.0 1.9 4.2E-05 42.1 5.0 110 270-388 4-123 (304)
176 KOG2835 Phosphoribosylamidoimi 81.9 2.2 4.8E-05 42.7 4.8 78 276-356 242-320 (373)
177 PF02843 GARS_C: Phosphoribosy 81.0 2.5 5.4E-05 33.9 4.1 31 231-262 49-79 (93)
178 cd08180 PDD 1,3-propanediol de 81.0 4.6 0.0001 40.3 7.0 86 271-357 23-118 (332)
179 COG1609 PurR Transcriptional r 80.5 64 0.0014 32.1 16.4 153 247-419 29-204 (333)
180 PF06506 PrpR_N: Propionate ca 79.7 7.6 0.00016 34.9 7.3 83 308-400 16-101 (176)
181 smart00878 Biotin_carb_C Bioti 79.5 5.6 0.00012 32.9 5.8 45 234-292 49-93 (107)
182 COG1454 EutG Alcohol dehydroge 79.5 5.9 0.00013 40.3 7.1 87 271-357 30-137 (377)
183 PF02785 Biotin_carb_C: Biotin 78.4 4.9 0.00011 33.2 5.2 46 234-293 49-94 (107)
184 PRK13805 bifunctional acetalde 77.9 7.8 0.00017 44.0 8.3 74 271-344 481-559 (862)
185 PRK15424 propionate catabolism 77.6 41 0.00089 36.0 13.1 117 288-414 28-153 (538)
186 cd05017 SIS_PGI_PMI_1 The memb 76.9 36 0.00079 28.1 10.2 55 301-358 46-100 (119)
187 PRK06203 aroB 3-dehydroquinate 76.4 14 0.00031 37.7 9.0 87 271-357 43-146 (389)
188 cd08198 DHQS-like2 Dehydroquin 76.3 14 0.00031 37.4 8.9 87 271-357 31-134 (369)
189 cd00860 ThrRS_anticodon ThrRS 76.1 14 0.00031 28.5 7.2 57 272-333 3-59 (91)
190 PF03129 HGTP_anticodon: Antic 74.4 10 0.00023 29.8 6.0 56 273-333 2-60 (94)
191 COG2515 Acd 1-aminocyclopropan 73.7 16 0.00034 35.9 7.9 74 284-358 132-217 (323)
192 PF00532 Peripla_BP_1: Peripla 72.7 92 0.002 30.0 13.3 126 271-418 2-147 (279)
193 KOG2884 26S proteasome regulat 72.5 84 0.0018 29.3 12.9 74 245-322 86-162 (259)
194 cd05005 SIS_PHI Hexulose-6-pho 72.1 72 0.0016 28.4 12.2 79 275-358 37-130 (179)
195 cd05013 SIS_RpiR RpiR-like pro 70.8 53 0.0011 27.2 10.0 52 301-357 63-114 (139)
196 TIGR03127 RuMP_HxlB 6-phospho 70.1 52 0.0011 29.3 10.3 82 271-358 31-127 (179)
197 cd08196 DHQS-like1 Dehydroquin 70.0 30 0.00064 34.9 9.4 83 271-357 20-111 (346)
198 cd05014 SIS_Kpsf KpsF-like pro 70.0 40 0.00086 27.9 9.0 52 301-357 50-101 (128)
199 TIGR03405 Phn_Fe-ADH phosphona 69.9 11 0.00023 38.1 6.3 86 271-357 24-135 (355)
200 PF04392 ABC_sub_bind: ABC tra 69.6 19 0.0004 35.1 7.7 72 283-356 14-89 (294)
201 PRK11914 diacylglycerol kinase 69.4 30 0.00065 33.9 9.2 78 277-358 19-98 (306)
202 PRK10423 transcriptional repre 69.2 83 0.0018 30.5 12.4 105 248-354 28-142 (327)
203 TIGR03702 lip_kinase_YegS lipi 69.2 36 0.00078 33.2 9.7 73 282-358 12-90 (293)
204 cd00861 ProRS_anticodon_short 69.0 13 0.00027 29.2 5.3 57 272-333 3-62 (94)
205 cd08184 Fe-ADH3 Iron-containin 68.8 18 0.0004 36.3 7.6 83 272-357 27-132 (347)
206 TIGR02329 propionate_PrpR prop 68.2 66 0.0014 34.4 12.0 97 308-414 36-143 (526)
207 PF03853 YjeF_N: YjeF-related 67.9 58 0.0013 29.0 9.9 61 269-329 24-85 (169)
208 PRK13054 lipid kinase; Reviewe 67.6 51 0.0011 32.2 10.4 73 282-358 16-94 (300)
209 PRK05849 hypothetical protein; 67.3 1.7E+02 0.0038 32.9 15.3 143 5-150 41-215 (783)
210 PRK15138 aldehyde reductase; P 66.5 15 0.00033 37.5 6.6 65 271-337 30-97 (387)
211 PLN02958 diacylglycerol kinase 65.2 1.1E+02 0.0024 32.3 12.9 115 236-358 81-209 (481)
212 cd00578 L-fuc_L-ara-isomerases 64.5 83 0.0018 32.8 11.8 115 284-414 23-150 (452)
213 PRK13055 putative lipid kinase 63.7 42 0.00091 33.4 9.1 79 277-358 13-95 (334)
214 TIGR01506 ribC_arch riboflavin 63.2 52 0.0011 29.0 8.3 48 281-331 10-60 (151)
215 cd00858 GlyRS_anticodon GlyRS 63.1 31 0.00067 28.7 6.9 57 271-333 27-85 (121)
216 TIGR00147 lipid kinase, YegS/R 63.1 29 0.00063 33.7 7.7 77 278-358 13-93 (293)
217 PRK13337 putative lipid kinase 62.6 40 0.00087 33.0 8.6 72 283-358 18-93 (304)
218 PRK12757 cell division protein 62.1 59 0.0013 31.2 9.1 65 271-335 183-256 (256)
219 COG2984 ABC-type uncharacteriz 61.7 40 0.00086 33.4 8.1 81 272-354 32-115 (322)
220 PRK15482 transcriptional regul 61.5 1.3E+02 0.0029 28.9 12.0 51 302-357 186-236 (285)
221 PF07065 D123: D123; InterPro 59.1 1.9E+02 0.0041 28.5 12.8 135 7-154 75-242 (299)
222 cd00859 HisRS_anticodon HisRS 58.8 42 0.00091 25.3 6.6 57 272-333 3-59 (91)
223 PRK13059 putative lipid kinase 58.7 46 0.00099 32.5 8.2 76 278-358 13-92 (295)
224 COG4002 Predicted phosphotrans 58.5 52 0.0011 30.4 7.6 82 242-340 113-206 (256)
225 TIGR00365 monothiol glutaredox 58.1 31 0.00066 27.7 5.7 34 270-303 11-47 (97)
226 PF01380 SIS: SIS domain SIS d 58.0 58 0.0013 26.8 7.7 51 302-357 57-107 (131)
227 PRK12419 riboflavin synthase s 57.9 1.2E+02 0.0025 27.0 9.6 65 271-338 11-86 (158)
228 COG0337 AroB 3-dehydroquinate 57.6 59 0.0013 32.8 8.6 144 272-416 35-206 (360)
229 PLN03049 pyridoxine (pyridoxam 57.4 1.6E+02 0.0035 30.9 12.3 36 271-306 60-95 (462)
230 PRK14569 D-alanyl-alanine synt 57.1 18 0.00038 35.4 5.0 106 270-384 3-119 (296)
231 PRK11337 DNA-binding transcrip 56.7 1.6E+02 0.0036 28.3 11.7 52 302-358 191-242 (292)
232 PRK11557 putative DNA-binding 55.9 1.1E+02 0.0023 29.4 10.2 41 301-341 178-218 (278)
233 COG4126 Hydantoin racemase [Am 55.7 19 0.00041 33.6 4.5 78 271-352 110-201 (230)
234 TIGR00736 nifR3_rel_arch TIM-b 55.4 1.9E+02 0.0041 27.4 11.9 127 239-372 72-211 (231)
235 COG0062 Uncharacterized conser 55.4 1.7E+02 0.0038 27.0 12.2 35 271-305 50-84 (203)
236 PRK12361 hypothetical protein; 55.4 1.2E+02 0.0026 32.4 11.4 77 277-358 253-331 (547)
237 cd05008 SIS_GlmS_GlmD_1 SIS (S 54.6 1.1E+02 0.0023 25.2 8.8 51 301-356 49-99 (126)
238 cd07304 Chorismate_synthase Ch 54.6 38 0.00082 34.0 6.7 64 312-392 184-250 (344)
239 TIGR01481 ccpA catabolite cont 53.7 2.2E+02 0.0047 27.6 14.4 105 247-354 30-144 (329)
240 PF02570 CbiC: Precorrin-8X me 53.6 9.5 0.00021 35.1 2.2 40 339-383 135-177 (198)
241 cd03522 MoeA_like MoeA_like. T 53.6 1.5E+02 0.0034 29.3 10.9 87 269-357 158-256 (312)
242 cd01539 PBP1_GGBP Periplasmic 53.5 75 0.0016 30.7 8.8 45 289-333 21-65 (303)
243 PRK10927 essential cell divisi 53.5 79 0.0017 31.2 8.5 65 271-335 246-319 (319)
244 PRK08286 cbiC cobalt-precorrin 52.7 1.1E+02 0.0024 28.5 9.1 41 338-383 147-190 (214)
245 cd06305 PBP1_methylthioribose_ 52.0 80 0.0017 29.5 8.5 45 287-333 19-63 (273)
246 cd01988 Na_H_Antiporter_C The 51.8 23 0.0005 29.1 4.2 53 284-339 56-108 (132)
247 PF07881 Fucose_iso_N1: L-fuco 51.7 1.2E+02 0.0026 27.1 8.6 110 271-382 4-135 (171)
248 TIGR02417 fruct_sucro_rep D-fr 51.2 2.4E+02 0.0051 27.3 17.6 85 247-333 31-124 (327)
249 PF04122 CW_binding_2: Putativ 51.2 1.2E+02 0.0025 23.8 10.1 64 270-343 25-89 (92)
250 COG4029 Uncharacterized protei 50.7 46 0.001 28.0 5.5 46 3-53 16-61 (142)
251 PRK00861 putative lipid kinase 50.5 76 0.0017 30.9 8.3 76 278-358 14-91 (300)
252 TIGR00393 kpsF KpsF/GutQ famil 49.7 1E+02 0.0023 29.1 9.0 41 301-341 50-90 (268)
253 PRK09492 treR trehalose repres 49.5 2.5E+02 0.0053 27.0 13.9 84 247-332 33-125 (315)
254 PRK08862 short chain dehydroge 49.2 86 0.0019 29.1 8.1 83 239-335 8-93 (227)
255 PRK05575 cbiC precorrin-8X met 48.9 96 0.0021 28.7 8.0 41 338-383 141-184 (204)
256 PF13407 Peripla_BP_4: Peripla 48.5 98 0.0021 28.7 8.5 43 290-333 21-63 (257)
257 PLN02204 diacylglycerol kinase 48.4 2.1E+02 0.0045 31.1 11.4 106 237-346 129-238 (601)
258 PLN03050 pyridoxine (pyridoxam 48.1 1.6E+02 0.0035 28.0 9.8 56 271-327 61-116 (246)
259 PF07302 AroM: AroM protein; 47.2 1.6E+02 0.0034 27.7 9.2 45 281-330 162-207 (221)
260 cd06300 PBP1_ABC_sugar_binding 46.9 1E+02 0.0022 28.9 8.3 37 297-333 32-68 (272)
261 PRK05867 short chain dehydroge 46.8 1E+02 0.0022 28.7 8.3 52 283-335 43-96 (253)
262 cd06310 PBP1_ABC_sugar_binding 45.9 90 0.002 29.1 7.8 41 291-331 23-63 (273)
263 KOG2158 Tubulin-tyrosine ligas 45.8 13 0.00027 38.5 1.8 39 6-45 215-253 (565)
264 cd00738 HGTP_anticodon HGTP an 45.7 80 0.0017 24.2 6.3 56 273-333 4-62 (94)
265 PRK11543 gutQ D-arabinose 5-ph 45.6 1.8E+02 0.0039 28.5 10.1 67 275-341 46-132 (321)
266 cd07943 DRE_TIM_HOA 4-hydroxy- 45.6 84 0.0018 30.1 7.5 102 279-385 107-219 (263)
267 KOG1208 Dehydrogenases with di 45.2 75 0.0016 31.5 7.3 81 238-335 37-124 (314)
268 cd06320 PBP1_allose_binding Pe 45.2 94 0.002 29.1 7.9 21 310-330 42-62 (275)
269 PRK05954 precorrin-8X methylmu 45.1 1.3E+02 0.0027 27.9 8.1 85 291-383 83-179 (203)
270 PF06258 Mito_fiss_Elm1: Mitoc 45.0 3.2E+02 0.0069 27.0 14.0 106 269-386 145-259 (311)
271 cd03786 GT1_UDP-GlcNAc_2-Epime 44.8 83 0.0018 31.0 7.7 84 273-356 31-120 (363)
272 PRK10892 D-arabinose 5-phospha 44.0 1.6E+02 0.0034 29.0 9.5 40 302-341 98-137 (326)
273 TIGR02990 ectoine_eutA ectoine 43.7 1.9E+02 0.0042 27.4 9.5 62 271-334 121-191 (239)
274 PRK05382 chorismate synthase; 43.6 76 0.0016 32.1 6.9 63 312-391 182-247 (359)
275 COG0138 PurH AICAR transformyl 43.5 20 0.00043 37.4 2.9 44 279-333 8-51 (515)
276 KOG2799 Succinyl-CoA synthetas 43.3 63 0.0014 32.5 6.2 49 2-51 46-106 (434)
277 COG0695 GrxC Glutaredoxin and 43.2 1.1E+02 0.0023 23.6 6.4 40 279-319 7-46 (80)
278 PLN02918 pyridoxine (pyridoxam 43.1 2.9E+02 0.0062 29.7 11.5 34 271-304 136-169 (544)
279 COG0794 GutQ Predicted sugar p 42.9 2.8E+02 0.006 25.7 11.1 82 270-357 39-140 (202)
280 PRK13936 phosphoheptose isomer 42.4 2.7E+02 0.0058 25.4 10.5 50 305-356 118-167 (197)
281 TIGR00853 pts-lac PTS system, 42.3 61 0.0013 25.9 5.1 78 271-357 4-84 (95)
282 PRK08195 4-hyroxy-2-oxovalerat 42.0 1.3E+02 0.0029 30.1 8.5 52 279-330 110-162 (337)
283 PRK05953 precorrin-8X methylmu 41.7 1.6E+02 0.0035 27.3 8.2 85 291-383 81-177 (208)
284 PRK14686 hypothetical protein; 41.6 86 0.0019 26.3 6.1 44 111-154 9-60 (119)
285 PRK10310 PTS system galactitol 41.6 1.5E+02 0.0034 23.5 7.3 53 272-333 4-58 (94)
286 PF01297 TroA: Periplasmic sol 41.5 1E+02 0.0022 29.2 7.4 67 291-357 162-231 (256)
287 TIGR01205 D_ala_D_alaTIGR D-al 41.4 25 0.00054 34.4 3.2 113 272-385 1-127 (315)
288 PRK09526 lacI lac repressor; R 41.2 3.4E+02 0.0074 26.3 12.8 107 247-354 34-150 (342)
289 cd05564 PTS_IIB_chitobiose_lic 41.1 1E+02 0.0022 24.6 6.2 82 273-363 2-87 (96)
290 cd06318 PBP1_ABC_sugar_binding 41.0 1.8E+02 0.004 27.1 9.2 44 288-333 20-63 (282)
291 COG2086 FixA Electron transfer 40.8 2.2E+02 0.0047 27.5 9.4 83 271-356 56-146 (260)
292 COG1737 RpiR Transcriptional r 40.7 2.7E+02 0.0059 26.9 10.4 40 293-332 172-211 (281)
293 cd06321 PBP1_ABC_sugar_binding 40.6 1.5E+02 0.0032 27.7 8.4 41 291-331 23-63 (271)
294 PRK13057 putative lipid kinase 40.3 1.7E+02 0.0036 28.3 8.8 70 284-358 13-84 (287)
295 COG0300 DltE Short-chain dehyd 40.2 3.5E+02 0.0076 26.1 10.9 84 237-334 7-93 (265)
296 PRK10727 DNA-binding transcrip 40.0 3.6E+02 0.0079 26.2 13.5 85 247-333 30-123 (343)
297 cd03129 GAT1_Peptidase_E_like 40.0 2.2E+02 0.0048 26.0 9.2 89 270-380 29-118 (210)
298 cd05710 SIS_1 A subgroup of th 39.7 2.1E+02 0.0046 23.5 9.0 51 302-357 51-101 (120)
299 TIGR02069 cyanophycinase cyano 39.5 2.7E+02 0.0058 26.5 9.9 30 270-299 28-58 (250)
300 PF02601 Exonuc_VII_L: Exonucl 39.4 3.8E+02 0.0082 26.3 16.5 63 271-335 15-85 (319)
301 cd06273 PBP1_GntR_like_1 This 39.3 2.7E+02 0.0059 25.6 10.0 45 286-332 18-62 (268)
302 cd02911 arch_FMN Archeal FMN-b 39.0 3.1E+02 0.0067 25.8 10.1 113 235-354 74-197 (233)
303 PF01264 Chorismate_synt: Chor 38.8 60 0.0013 32.6 5.4 87 283-391 158-247 (346)
304 KOG1057 Arp2/3 complex-interac 38.5 52 0.0011 36.3 5.1 125 17-150 178-322 (1018)
305 PRK04247 hypothetical protein; 38.2 3.1E+02 0.0068 26.0 9.8 23 130-152 160-183 (238)
306 cd01391 Periplasmic_Binding_Pr 38.2 1.4E+02 0.0031 26.8 7.8 40 292-331 25-64 (269)
307 cd07944 DRE_TIM_HOA_like 4-hyd 38.2 1.5E+02 0.0033 28.5 8.0 99 279-380 104-212 (266)
308 KOG1014 17 beta-hydroxysteroid 38.1 1.1E+02 0.0024 30.2 6.9 107 235-356 50-160 (312)
309 cd05006 SIS_GmhA Phosphoheptos 38.0 2.8E+02 0.0062 24.4 11.8 52 301-357 104-155 (177)
310 TIGR03217 4OH_2_O_val_ald 4-hy 37.7 1.4E+02 0.003 29.9 7.8 53 279-331 109-162 (333)
311 PRK11303 DNA-binding transcrip 37.4 3.8E+02 0.0083 25.7 14.4 105 247-354 32-147 (328)
312 PRK06455 riboflavin synthase; 36.9 3E+02 0.0065 24.3 13.5 96 272-386 3-101 (155)
313 PRK14674 hypothetical protein; 36.9 1E+02 0.0023 26.4 5.9 42 113-154 11-60 (133)
314 COG1619 LdcA Uncharacterized p 36.7 1.5E+02 0.0033 29.4 7.8 85 270-354 10-109 (313)
315 COG1597 LCB5 Sphingosine kinas 36.5 1.6E+02 0.0034 29.0 7.9 78 277-358 13-93 (301)
316 PF01522 Polysacc_deac_1: Poly 36.1 93 0.002 25.2 5.5 53 272-326 6-58 (123)
317 TIGR00160 MGSA methylglyoxal s 36.1 2.8E+02 0.006 24.2 8.3 98 272-381 4-109 (143)
318 cd03174 DRE_TIM_metallolyase D 36.1 1.7E+02 0.0038 27.5 8.1 46 282-327 113-161 (265)
319 PLN02754 chorismate synthase 36.0 1E+02 0.0022 31.6 6.6 62 313-391 218-282 (413)
320 PRK10014 DNA-binding transcrip 35.8 4.2E+02 0.009 25.7 12.9 105 247-354 35-150 (342)
321 PRK10703 DNA-binding transcrip 35.7 4.2E+02 0.0091 25.7 14.9 82 271-354 60-145 (341)
322 PRK08085 gluconate 5-dehydroge 35.5 2.2E+02 0.0048 26.3 8.7 52 283-335 43-96 (254)
323 TIGR02667 moaB_proteo molybden 35.4 3.1E+02 0.0068 24.1 10.0 98 270-378 4-111 (163)
324 PRK11175 universal stress prot 35.1 2E+02 0.0043 27.7 8.5 68 286-356 71-146 (305)
325 PRK14987 gluconate operon tran 35.1 4.2E+02 0.0092 25.6 11.5 104 247-354 34-148 (331)
326 PF10096 DUF2334: Uncharacteri 35.1 1.3E+02 0.0028 28.6 6.9 51 280-330 12-73 (243)
327 PRK10565 putative carbohydrate 34.9 4.8E+02 0.01 27.8 11.8 56 270-325 60-116 (508)
328 PRK07523 gluconate 5-dehydroge 34.9 2E+02 0.0044 26.6 8.3 85 238-336 12-98 (255)
329 PRK07097 gluconate 5-dehydroge 34.8 2.2E+02 0.0047 26.7 8.6 84 238-335 12-97 (265)
330 cd03418 GRX_GRXb_1_3_like Glut 34.8 1.8E+02 0.0039 21.2 6.8 37 280-318 7-43 (75)
331 PF02548 Pantoate_transf: Keto 34.5 3.1E+02 0.0068 26.4 9.3 99 244-356 91-205 (261)
332 PRK12463 chorismate synthase; 34.5 1.3E+02 0.0029 30.7 7.1 63 312-391 200-267 (390)
333 TIGR02955 TMAO_TorT TMAO reduc 34.5 2.4E+02 0.0053 26.9 9.0 46 288-333 20-65 (295)
334 PRK13394 3-hydroxybutyrate deh 33.9 2.4E+02 0.0052 26.1 8.6 9 326-334 85-93 (262)
335 PRK14680 hypothetical protein; 33.9 1.4E+02 0.003 25.7 6.2 42 112-153 11-60 (134)
336 TIGR00676 fadh2 5,10-methylene 33.9 3.6E+02 0.0078 25.9 9.9 56 281-336 41-97 (272)
337 cd04795 SIS SIS domain. SIS (S 33.7 2E+02 0.0044 21.5 7.6 37 296-332 45-81 (87)
338 PRK06830 diphosphate--fructose 33.6 60 0.0013 33.8 4.6 22 282-303 157-178 (443)
339 PRK10426 alpha-glucosidase; Pr 33.6 3.1E+02 0.0066 30.1 10.3 91 238-333 179-290 (635)
340 cd00862 ProRS_anticodon_zinc P 33.5 1.6E+02 0.0035 27.0 7.1 60 272-335 12-77 (202)
341 cd04740 DHOD_1B_like Dihydroor 33.4 2.8E+02 0.006 26.8 9.2 47 282-331 138-185 (296)
342 TIGR03566 FMN_reduc_MsuE FMN r 33.4 3.4E+02 0.0073 23.9 11.5 22 310-333 55-76 (174)
343 TIGR02128 G6PI_arch bifunction 33.3 4.2E+02 0.0091 26.1 10.4 54 301-357 69-122 (308)
344 COG0205 PfkA 6-phosphofructoki 33.1 56 0.0012 32.9 4.2 40 318-357 87-127 (347)
345 PRK01966 ddl D-alanyl-alanine 33.1 62 0.0013 32.1 4.6 33 271-303 4-41 (333)
346 cd01080 NAD_bind_m-THF_DH_Cycl 32.7 3.3E+02 0.0072 24.2 8.8 55 270-336 44-98 (168)
347 PRK07109 short chain dehydroge 32.6 2.7E+02 0.0058 27.5 9.1 51 283-334 42-94 (334)
348 PRK03708 ppnK inorganic polyph 32.4 70 0.0015 31.1 4.7 83 273-357 3-89 (277)
349 PF03698 UPF0180: Uncharacteri 32.4 1.2E+02 0.0025 23.7 4.9 53 287-354 11-63 (80)
350 PRK09432 metF 5,10-methylenete 32.0 4.6E+02 0.01 25.6 10.4 54 282-335 66-120 (296)
351 KOG0725 Reductases with broad 32.0 1.8E+02 0.0039 28.0 7.5 85 239-337 11-101 (270)
352 TIGR02189 GlrX-like_plant Glut 32.0 2.6E+02 0.0057 22.3 7.4 33 271-305 8-40 (99)
353 TIGR02190 GlrX-dom Glutaredoxi 31.9 1.5E+02 0.0033 22.3 5.7 33 271-305 8-40 (79)
354 TIGR02181 GRX_bact Glutaredoxi 31.8 1.8E+02 0.0039 21.6 6.1 37 280-318 6-42 (79)
355 COG0413 PanB Ketopantoate hydr 31.8 2.8E+02 0.0061 26.7 8.3 101 242-356 88-204 (268)
356 PF04392 ABC_sub_bind: ABC tra 31.8 3.9E+02 0.0084 25.7 9.9 115 270-403 131-254 (294)
357 PRK10076 pyruvate formate lyas 31.5 4E+02 0.0087 24.7 9.4 81 242-330 109-211 (213)
358 PRK14688 hypothetical protein; 31.5 1.6E+02 0.0034 24.8 6.1 42 112-153 11-60 (121)
359 PLN02780 ketoreductase/ oxidor 31.3 2.3E+02 0.005 27.9 8.3 86 238-336 55-143 (320)
360 PF06490 FleQ: Flagellar regul 31.3 2.7E+02 0.0057 22.8 7.4 69 280-357 6-78 (109)
361 TIGR00418 thrS threonyl-tRNA s 31.3 4.8E+02 0.01 27.9 11.3 58 271-333 471-528 (563)
362 PRK12360 4-hydroxy-3-methylbut 31.3 1E+02 0.0022 30.1 5.6 30 314-343 105-134 (281)
363 COG2185 Sbm Methylmalonyl-CoA 31.3 1.8E+02 0.0039 25.4 6.4 58 271-333 13-71 (143)
364 cd01453 vWA_transcription_fact 30.7 2.8E+02 0.0061 24.8 8.1 92 244-347 86-179 (183)
365 PRK07478 short chain dehydroge 30.7 2.4E+02 0.0052 26.1 8.1 85 238-336 8-94 (254)
366 COG0300 DltE Short-chain dehyd 30.6 2.6E+02 0.0056 27.0 8.1 79 271-355 6-92 (265)
367 PF01866 Diphthamide_syn: Puta 30.6 1.7E+02 0.0038 28.7 7.2 83 237-333 183-268 (307)
368 TIGR00252 conserved hypothetic 30.6 1.8E+02 0.0038 24.5 6.2 42 112-153 11-60 (119)
369 cd01542 PBP1_TreR_like Ligand- 30.4 4.2E+02 0.0092 24.2 10.3 48 284-333 16-63 (259)
370 TIGR02049 gshA_ferroox glutama 30.4 83 0.0018 31.8 4.7 45 19-64 258-312 (403)
371 TIGR01283 nifE nitrogenase mol 30.4 6E+02 0.013 26.4 11.6 120 271-409 327-452 (456)
372 cd07062 Peptidase_S66_mccF_lik 30.3 1.9E+02 0.004 28.5 7.4 65 272-336 2-77 (308)
373 cd01019 ZnuA Zinc binding prot 30.2 2E+02 0.0044 27.8 7.6 63 292-354 192-257 (286)
374 PHA03050 glutaredoxin; Provisi 30.2 3.1E+02 0.0066 22.4 8.0 34 271-306 13-49 (108)
375 PF12745 HGTP_anticodon2: Anti 30.0 2E+02 0.0043 27.9 7.3 62 269-334 4-66 (273)
376 PRK14682 hypothetical protein; 30.0 1.9E+02 0.0041 24.2 6.3 42 112-153 9-59 (117)
377 TIGR00322 diphth2_R diphthamid 29.9 3.3E+02 0.0072 27.2 9.1 82 238-333 207-291 (332)
378 PRK06139 short chain dehydroge 29.9 1.9E+02 0.0042 28.6 7.5 84 238-335 9-94 (330)
379 PF01488 Shikimate_DH: Shikima 29.8 3.1E+02 0.0068 23.1 7.9 73 270-357 12-85 (135)
380 PF00763 THF_DHG_CYH: Tetrahyd 29.8 3.1E+02 0.0067 22.7 7.6 53 271-323 30-84 (117)
381 PRK14040 oxaloacetate decarbox 29.7 2.2E+02 0.0047 31.0 8.3 101 279-385 119-232 (593)
382 COG0757 AroQ 3-dehydroquinate 29.7 2.5E+02 0.0054 24.4 6.8 77 276-357 21-101 (146)
383 COG0054 RibH Riboflavin syntha 29.6 3.9E+02 0.0085 23.5 9.1 60 270-332 12-78 (152)
384 cd01541 PBP1_AraR Ligand-bindi 29.6 4.6E+02 0.0099 24.3 12.0 49 283-333 15-63 (273)
385 PRK11302 DNA-binding transcrip 29.6 4.1E+02 0.0089 25.3 9.6 36 297-332 174-209 (284)
386 PRK10653 D-ribose transporter 29.5 4.1E+02 0.0089 25.2 9.6 62 270-333 26-90 (295)
387 PRK12497 hypothetical protein; 29.4 1.6E+02 0.0034 24.6 5.7 42 112-153 11-60 (119)
388 cd06308 PBP1_sensor_kinase_lik 29.4 3.3E+02 0.0071 25.3 8.8 43 288-332 20-63 (270)
389 PF01055 Glyco_hydro_31: Glyco 29.3 5E+02 0.011 26.7 10.8 91 240-333 2-104 (441)
390 PRK14185 bifunctional 5,10-met 29.3 1E+02 0.0022 30.3 5.1 76 271-356 158-234 (293)
391 TIGR02482 PFKA_ATP 6-phosphofr 29.2 87 0.0019 30.9 4.8 21 283-303 77-97 (301)
392 PF03681 UPF0150: Uncharacteri 29.0 54 0.0012 22.4 2.4 20 239-258 24-43 (48)
393 PRK02645 ppnK inorganic polyph 28.9 2E+02 0.0043 28.3 7.3 82 271-356 4-89 (305)
394 PLN02530 histidine-tRNA ligase 28.8 1.9E+02 0.004 30.6 7.5 58 271-333 402-459 (487)
395 PRK14041 oxaloacetate decarbox 28.8 2.3E+02 0.0049 29.9 8.0 104 276-385 114-230 (467)
396 PRK07063 short chain dehydroge 28.7 2.9E+02 0.0063 25.6 8.3 53 282-335 40-96 (260)
397 cd03029 GRX_hybridPRX5 Glutare 28.4 1.5E+02 0.0032 21.7 5.0 28 279-306 7-34 (72)
398 cd06283 PBP1_RegR_EndR_KdgR_li 28.4 4.6E+02 0.01 23.9 12.2 49 283-333 15-63 (267)
399 PRK06940 short chain dehydroge 28.2 2.3E+02 0.005 26.9 7.6 54 282-336 33-87 (275)
400 cd01537 PBP1_Repressors_Sugar_ 28.0 4.5E+02 0.0098 23.7 13.3 70 284-356 16-87 (264)
401 PRK13761 hypothetical protein; 27.9 2.9E+02 0.0063 26.1 7.5 70 285-357 82-159 (248)
402 PF04174 CP_ATPgrasp_1: A circ 27.8 68 0.0015 32.1 3.7 24 129-152 70-93 (330)
403 cd04949 GT1_gtfA_like This fam 27.8 5.8E+02 0.013 24.9 15.0 13 401-413 344-356 (372)
404 cd01917 ACS_2 Acetyl-CoA synth 27.8 3.1E+02 0.0068 26.7 8.0 30 387-416 192-221 (287)
405 cd01538 PBP1_ABC_xylose_bindin 27.8 4.8E+02 0.01 24.6 9.8 40 291-332 23-62 (288)
406 PRK01231 ppnK inorganic polyph 27.8 1.1E+02 0.0023 30.1 5.1 86 271-357 5-95 (295)
407 cd04865 LigD_Pol_like_2 LigD_P 27.8 1.2E+02 0.0025 28.7 5.1 74 8-85 123-208 (228)
408 PRK14684 hypothetical protein; 27.7 2.3E+02 0.0049 23.9 6.4 42 112-153 11-60 (120)
409 TIGR03272 methan_mark_6 putati 27.3 1.8E+02 0.004 24.8 5.6 44 4-52 9-52 (132)
410 cd07948 DRE_TIM_HCS Saccharomy 27.3 2.2E+02 0.0047 27.4 7.1 77 242-322 103-180 (262)
411 cd05009 SIS_GlmS_GlmD_2 SIS (S 27.2 3E+02 0.0065 23.1 7.4 21 238-258 17-37 (153)
412 COG5148 RPN10 26S proteasome r 27.1 4.9E+02 0.011 23.8 12.3 59 243-305 84-144 (243)
413 TIGR00677 fadh2_euk methylenet 27.1 4.4E+02 0.0095 25.6 9.2 57 280-336 41-98 (281)
414 PRK08339 short chain dehydroge 27.0 2.8E+02 0.0061 26.1 7.9 53 282-335 41-95 (263)
415 PRK14938 Ser-tRNA(Thr) hydrola 27.0 4.5E+02 0.0097 26.9 9.3 58 271-333 275-332 (387)
416 PF02016 Peptidase_S66: LD-car 27.0 96 0.0021 30.2 4.6 80 274-354 2-97 (284)
417 PRK02155 ppnK NAD(+)/NADH kina 26.9 3.3E+02 0.0072 26.6 8.4 86 270-357 5-96 (291)
418 PRK11253 ldcA L,D-carboxypepti 26.9 2.8E+02 0.0061 27.3 7.9 97 272-376 3-120 (305)
419 PRK07666 fabG 3-ketoacyl-(acyl 26.9 3.8E+02 0.0083 24.4 8.7 84 238-335 9-94 (239)
420 PF06506 PrpR_N: Propionate ca 26.8 3.3E+02 0.0071 24.2 7.8 77 239-332 56-132 (176)
421 cd03027 GRX_DEP Glutaredoxin ( 26.7 2.6E+02 0.0056 20.5 7.5 43 272-318 2-44 (73)
422 PTZ00286 6-phospho-1-fructokin 26.7 1.1E+02 0.0023 32.2 5.1 52 303-355 154-212 (459)
423 PRK11858 aksA trans-homoaconit 26.6 1.9E+02 0.004 29.5 6.8 41 280-321 141-183 (378)
424 cd06300 PBP1_ABC_sugar_binding 26.4 5.2E+02 0.011 23.9 11.6 88 240-335 101-195 (272)
425 TIGR00033 aroC chorismate synt 26.4 1.8E+02 0.0039 29.4 6.4 63 312-391 183-248 (351)
426 PRK08674 bifunctional phosphog 26.4 6.4E+02 0.014 24.9 12.6 55 300-357 80-134 (337)
427 KOG1205 Predicted dehydrogenas 26.1 1.5E+02 0.0033 28.9 5.7 13 324-336 90-102 (282)
428 PF02954 HTH_8: Bacterial regu 26.1 45 0.00098 22.2 1.5 21 392-412 22-42 (42)
429 COG4087 Soluble P-type ATPase 26.1 2.4E+02 0.0053 24.4 6.1 85 299-389 20-104 (152)
430 PRK05876 short chain dehydroge 25.9 3.3E+02 0.0072 25.8 8.2 54 281-335 38-93 (275)
431 cd03770 SR_TndX_transposase Se 25.9 1.6E+02 0.0035 25.1 5.4 57 276-332 47-106 (140)
432 cd06301 PBP1_rhizopine_binding 25.7 4.8E+02 0.01 24.1 9.2 54 275-331 34-87 (272)
433 TIGR00715 precor6x_red precorr 25.5 79 0.0017 30.4 3.6 32 275-309 4-35 (256)
434 cd07025 Peptidase_S66 LD-Carbo 25.5 1.9E+02 0.0041 28.1 6.4 53 284-336 14-73 (282)
435 PLN02884 6-phosphofructokinase 25.5 1E+02 0.0022 31.8 4.6 52 303-355 121-179 (411)
436 PRK03094 hypothetical protein; 25.4 1.8E+02 0.0039 22.7 4.9 51 288-354 12-63 (80)
437 cd01974 Nitrogenase_MoFe_beta 25.4 4.8E+02 0.01 27.0 9.7 80 271-355 304-385 (435)
438 cd06274 PBP1_FruR Ligand bindi 25.3 5.3E+02 0.012 23.6 11.4 45 288-334 20-64 (264)
439 PRK12429 3-hydroxybutyrate deh 25.2 4.1E+02 0.0089 24.3 8.6 84 238-335 6-91 (258)
440 cd06311 PBP1_ABC_sugar_binding 25.2 5.5E+02 0.012 23.7 9.6 47 282-331 45-91 (274)
441 cd06309 PBP1_YtfQ_like Peripla 25.2 3.4E+02 0.0074 25.2 8.1 17 281-297 39-55 (273)
442 COG2082 CobH Precorrin isomera 25.2 3.2E+02 0.007 25.4 7.4 41 338-383 143-186 (210)
443 PF00106 adh_short: short chai 24.9 4.2E+02 0.0092 22.3 11.3 88 238-336 2-91 (167)
444 TIGR02778 ligD_pol DNA polymer 24.9 1.4E+02 0.003 28.6 5.0 74 8-85 138-223 (245)
445 cd01017 AdcA Metal binding pro 24.8 2.4E+02 0.0052 27.2 7.0 65 292-356 184-251 (282)
446 cd06275 PBP1_PurR Ligand-bindi 24.8 5.5E+02 0.012 23.6 10.3 69 285-355 17-86 (269)
447 PRK05282 (alpha)-aspartyl dipe 24.8 2.5E+02 0.0054 26.5 6.8 65 270-344 31-98 (233)
448 PLN02424 ketopantoate hydroxym 24.7 6.6E+02 0.014 25.2 9.9 101 242-355 108-224 (332)
449 cd04862 PaeLigD_Pol_like PaeLi 24.7 1.4E+02 0.003 28.2 5.0 74 8-85 122-207 (227)
450 cd03028 GRX_PICOT_like Glutare 24.3 3.4E+02 0.0074 21.0 7.4 36 271-306 8-46 (90)
451 PRK08589 short chain dehydroge 24.3 3.4E+02 0.0073 25.6 7.9 83 238-335 8-92 (272)
452 cd06312 PBP1_ABC_sugar_binding 24.2 2.9E+02 0.0063 25.7 7.4 18 282-299 42-59 (271)
453 cd05212 NAD_bind_m-THF_DH_Cycl 24.0 3.2E+02 0.0069 23.6 6.8 56 270-337 28-83 (140)
454 PRK06124 gluconate 5-dehydroge 24.0 3.2E+02 0.0069 25.3 7.6 52 283-335 45-98 (256)
455 cd07035 TPP_PYR_POX_like Pyrim 23.9 1.4E+02 0.003 25.6 4.7 88 289-383 3-92 (155)
456 PF11965 DUF3479: Domain of un 23.8 3.6E+02 0.0078 24.1 7.2 83 272-356 2-94 (164)
457 cd00763 Bacterial_PFK Phosphof 23.7 3.5E+02 0.0076 26.8 7.9 54 282-340 77-130 (317)
458 TIGR00442 hisS histidyl-tRNA s 23.7 4.6E+02 0.0099 26.6 9.1 58 271-333 323-380 (397)
459 cd04861 LigD_Pol_like LigD_Pol 23.6 1.5E+02 0.0034 27.9 5.1 74 8-85 122-207 (227)
460 PF13607 Succ_CoA_lig: Succiny 23.5 4.5E+02 0.0097 22.6 7.6 71 275-346 32-102 (138)
461 PRK14181 bifunctional 5,10-met 23.4 1.5E+02 0.0033 29.0 5.1 77 271-357 154-231 (287)
462 cd03466 Nitrogenase_NifN_2 Nit 23.3 8.3E+02 0.018 25.1 11.4 95 271-382 301-396 (429)
463 cd06296 PBP1_CatR_like Ligand- 23.3 5.8E+02 0.013 23.4 10.3 49 283-333 15-63 (270)
464 COG1748 LYS9 Saccharopine dehy 23.3 3.9E+02 0.0085 27.4 8.3 99 275-387 5-103 (389)
465 PRK06603 enoyl-(acyl carrier p 23.3 2.9E+02 0.0062 25.9 7.1 28 308-335 67-96 (260)
466 PRK13951 bifunctional shikimat 23.3 1.4E+02 0.0031 31.5 5.4 51 307-357 216-272 (488)
467 PRK08277 D-mannonate oxidoredu 23.3 4.1E+02 0.0089 24.9 8.3 52 283-335 44-97 (278)
468 cd04863 MtLigD_Pol_like MtLigD 23.2 1.7E+02 0.0036 27.7 5.2 74 8-85 126-211 (231)
469 TIGR03568 NeuC_NnaA UDP-N-acet 23.0 2.2E+02 0.0047 28.7 6.5 34 322-355 90-124 (365)
470 PRK10499 PTS system N,N'-diace 23.0 1.9E+02 0.0041 23.6 5.0 78 271-357 4-82 (106)
471 cd06298 PBP1_CcpA_like Ligand- 22.9 5.9E+02 0.013 23.3 10.1 44 287-332 19-62 (268)
472 PRK14675 hypothetical protein; 22.9 3E+02 0.0065 23.3 6.3 41 113-153 14-62 (125)
473 TIGR00197 yjeF_nterm yjeF N-te 22.9 5.9E+02 0.013 23.3 10.9 33 270-302 45-77 (205)
474 PRK15408 autoinducer 2-binding 22.7 3.6E+02 0.0077 26.7 7.9 20 312-331 92-111 (336)
475 KOG2555 AICAR transformylase/I 22.6 1.2E+02 0.0026 31.1 4.3 67 271-352 4-72 (588)
476 PF10137 TIR-like: Predicted n 22.6 4.8E+02 0.01 22.1 7.5 28 272-301 1-28 (125)
477 PRK00865 glutamate racemase; P 22.5 2.1E+02 0.0045 27.4 6.0 84 271-354 6-97 (261)
478 cd00758 MoCF_BD MoCF_BD: molyb 22.5 4.3E+02 0.0093 22.2 7.4 63 288-352 23-89 (133)
479 cd06316 PBP1_ABC_sugar_binding 22.5 4E+02 0.0088 25.1 8.1 13 318-330 74-86 (294)
480 PRK07062 short chain dehydroge 22.5 4.2E+02 0.0091 24.6 8.1 27 309-335 69-97 (265)
481 PF09875 DUF2102: Uncharacteri 22.4 2.9E+02 0.0063 22.6 5.7 44 4-52 10-53 (104)
482 PF02006 DUF137: Protein of un 22.3 2.5E+02 0.0055 25.2 5.8 71 285-357 19-98 (178)
483 TIGR00272 DPH2 diphthamide bio 22.3 5.7E+02 0.012 27.2 9.5 75 270-353 281-358 (496)
484 cd06280 PBP1_LacI_like_4 Ligan 22.2 6.1E+02 0.013 23.2 13.3 48 284-333 16-63 (263)
485 PF02021 UPF0102: Uncharacteri 22.2 2.3E+02 0.0049 22.5 5.2 39 114-152 3-49 (93)
486 PRK12330 oxaloacetate decarbox 22.2 3.1E+02 0.0068 29.1 7.6 104 279-385 119-234 (499)
487 PRK08643 acetoin reductase; Va 22.1 4.2E+02 0.0091 24.4 8.0 53 282-335 35-89 (256)
488 PRK14571 D-alanyl-alanine synt 22.1 3.5E+02 0.0076 26.1 7.6 77 272-356 2-87 (299)
489 PLN02837 threonine-tRNA ligase 22.0 2.6E+02 0.0057 30.5 7.2 56 272-333 518-573 (614)
490 PRK03298 hypothetical protein; 22.0 6.7E+02 0.015 23.6 9.8 120 20-152 27-157 (224)
491 cd06388 PBP1_iGluR_AMPA_GluR4 21.9 7.7E+02 0.017 24.7 10.3 83 237-332 102-185 (371)
492 KOG0333 U5 snRNP-like RNA heli 21.8 1E+03 0.022 25.6 11.5 97 237-356 494-594 (673)
493 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.7 4.8E+02 0.01 21.8 10.1 28 271-299 14-42 (153)
494 TIGR02855 spore_yabG sporulati 21.7 2.7E+02 0.0059 27.0 6.3 50 270-322 104-153 (283)
495 PRK14685 hypothetical protein; 21.6 3E+02 0.0064 24.9 6.2 42 112-153 47-96 (177)
496 cd00764 Eukaryotic_PFK Phospho 21.6 5.3E+02 0.011 29.0 9.4 141 242-398 362-545 (762)
497 COG2984 ABC-type uncharacteriz 21.6 2.7E+02 0.0058 27.7 6.4 140 237-404 134-283 (322)
498 PRK03991 threonyl-tRNA synthet 21.5 2.3E+02 0.005 31.0 6.6 58 271-333 500-557 (613)
499 PRK09590 celB cellobiose phosp 21.5 3E+02 0.0065 22.5 5.8 53 272-331 3-56 (104)
500 PRK12331 oxaloacetate decarbox 21.3 4.1E+02 0.0089 27.8 8.2 101 279-385 118-231 (448)
No 1
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.7e-85 Score=692.28 Aligned_cols=434 Identities=76% Similarity=1.188 Sum_probs=393.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
+++.+++.++++++|||+||||..+||+|+|+++++|++|+.++++.+..++..++||+||++.+|+++.++++.+|++.
T Consensus 142 v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i~ 221 (577)
T PLN02948 142 IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGSTR 221 (577)
T ss_pred eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCEE
Confidence 56889999999999999999998888789999999999999999998876556799999999889999999998889988
Q ss_pred EEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeec
Q 013695 83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC 162 (438)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~ 162 (438)
.+|..|+.+.++.+...+.|+.+++++++++++++.+++++|+++|++++|||++++|++||+|||||+|+++||+..++
T Consensus 222 ~~p~~E~~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~ 301 (577)
T PLN02948 222 CYPVVETIHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEAC 301 (577)
T ss_pred EecCcccEEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecc
Confidence 89998888888877777789999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEEe
Q 013695 163 YTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242 (438)
Q Consensus 163 ~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~~ 242 (438)
++|+|++|+|+++|+|++.+......++|+++++...+...+.....+++.+...|+|++++|++++.+.+|++|||+++
T Consensus 302 ~~s~fe~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkmGhV~~~ 381 (577)
T PLN02948 302 YTSQFEQHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHITVV 381 (577)
T ss_pred cCCHHHHHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCeeEEEEEe
Confidence 99999999999999999987665444789999986532111110011555666789999999999888899999999999
Q ss_pred cCCHHHHHHHHHHHhhhccCccc-cCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHH
Q 013695 243 GSSMGLVESRLNSLLKEDSSDCQ-FKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 243 G~~~~ea~~ka~~~~~~i~~~~~-~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~ 321 (438)
|+|.++++.+++.+++.+...+. .++..++|+|+|||+||+++++++++.|+++|++++++|+||||+|+++.+|++++
T Consensus 382 g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~ 461 (577)
T PLN02948 382 GPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSA 461 (577)
T ss_pred cCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHH
Confidence 99999999999999886654321 22345789999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCC
Q 013695 322 HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG 401 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~ 401 (438)
+++|++|||++|||++||||+++++|++||||||++++.++|+|+||||+|||+|+||+||+|||+.|||++|+|||+++
T Consensus 462 ~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~ 541 (577)
T PLN02948 462 HSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGAS 541 (577)
T ss_pred HHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013695 402 DADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYL 436 (438)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
|++||+||++||+++.++|++++++|++.+|+.|+
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (577)
T PLN02948 542 DPDLLDKMEAYQEDMRDMVLEKAEKLEELGWEEYL 576 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Confidence 99999999999999999999999999887888885
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=348.10 Aligned_cols=157 Identities=64% Similarity=0.993 Sum_probs=154.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCE
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPV 351 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pV 351 (438)
+|+|+|||+||++.|+++++.|++||++|+++|+||||||+++.+|.++++++|++|||++||+++|||||++++|.+||
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPV 83 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPV 83 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013695 352 IGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 352 I~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (438)
||||+.+..++|+|||+|++|||+||||+||+|+++.|||++|+|||++.|+.|++||++||++++++|+++++++.
T Consensus 84 iGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~~~~~V~~~~~~l~ 160 (162)
T COG0041 84 IGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEELE 160 (162)
T ss_pred EeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988775
No 3
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=4.4e-49 Score=340.89 Aligned_cols=155 Identities=68% Similarity=1.053 Sum_probs=151.3
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEE
Q 013695 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 352 (438)
Q Consensus 273 v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI 352 (438)
|+|+|||+||+++++++++.|+++|++|+++|+|+||+|+++.+|+++++++|++|||++||+++||||+++++|++|||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI 80 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013695 353 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 353 ~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
|||+++..++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||+++++++++++++|
T Consensus 81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~~~~~v~~~~~~l 155 (156)
T TIGR01162 81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKL 155 (156)
T ss_pred EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999987789999999999999999999999999999999999999999999999999999999999999888776
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=3e-45 Score=317.28 Aligned_cols=150 Identities=56% Similarity=0.894 Sum_probs=133.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
++|+|+|||+||+++++++.+.|+++|++++.+|+|+||+|+++.+|+++++++|++|+|++||+++|||++++++|++|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 013695 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDV 420 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~ 420 (438)
|||||++++.++|+|+|+|++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++++++|
T Consensus 81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~~~v 150 (150)
T PF00731_consen 81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMKEKV 150 (150)
T ss_dssp EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Confidence 9999999889999999999999999999999999999999999999999999999999999999998875
No 5
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.8e-43 Score=338.64 Aligned_cols=248 Identities=39% Similarity=0.672 Sum_probs=223.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.+.|.+|+.++++++|||+|+|.+++||+|+|.+++++.+++........... ..++|+|++..+|+|+.+.|+.+|++
T Consensus 119 ~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~~-~~vlE~fV~F~~EiSvi~aR~~~G~~ 197 (375)
T COG0026 119 VVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEGG-VPVLEEFVPFEREISVIVARSNDGEV 197 (375)
T ss_pred EeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhccC-ceeEEeecccceEEEEEEEEcCCCCE
Confidence 46889999999999999999999999999999999999999988665544332 24999999999999999999999999
Q ss_pred EEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceee
Q 013695 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~ 161 (438)
.+||++|+++++|++..++.|+.++++++++.++++.+++++|+|.|++.||||++++|+++++|+.||++||||||+.+
T Consensus 198 ~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~g 277 (375)
T COG0026 198 AFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDG 277 (375)
T ss_pred EEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEE
Q 013695 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~ 241 (438)
|.+|+|++|+|+++|+|++.+.. ..+++|+|++|...+.. .+..+...|++.+|||||.+.++||+||||..
T Consensus 278 c~~SQFEqHlRAv~glPLg~~~~-~~p~vMvNlLG~~~~~~-------~~~~~l~~p~~~lH~YGK~e~R~gRKmGHvn~ 349 (375)
T COG0026 278 CETSQFEQHLRAVLGLPLGSTTL-LSPSVMVNLLGDDVPPD-------DVKAVLALPGAHLHWYGKAEARPGRKMGHVNV 349 (375)
T ss_pred ccccHHHHHHHHHhCCCCCCccc-cCceEEEEecCCCCchh-------hhHHHHhCCCCEEEEecCccCCCCCeeeeEEe
Confidence 99999999999999999999654 46799999999742210 35677889999999999988899999999999
Q ss_pred ecCCHHHHHHHHHHHhh
Q 013695 242 VGSSMGLVESRLNSLLK 258 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~ 258 (438)
+++|.+++...+.....
T Consensus 350 ~~~~~~~~~~~~~~l~~ 366 (375)
T COG0026 350 LGSDSDELEQLAALLPA 366 (375)
T ss_pred ecCCHHHHHHHHHhhhh
Confidence 99997777776655443
No 6
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=9.3e-42 Score=345.03 Aligned_cols=247 Identities=41% Similarity=0.702 Sum_probs=223.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.++|.+|+.++++++|||+|+||..+||+|+|+++++|.+|+.++++.+.. +.+|||+||++++|+++.++++.+|++
T Consensus 120 ~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~--~~~ivEe~I~~~~E~sv~~~~~~~G~~ 197 (372)
T PRK06019 120 VVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGS--VPCILEEFVPFEREVSVIVARGRDGEV 197 (372)
T ss_pred EeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCC--CCEEEEecCCCCeEEEEEEEECCCCCE
Confidence 467899999999999999999998777899999999999999999998754 459999999977999999999889999
Q ss_pred EEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceee
Q 013695 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~ 161 (438)
..+|+.++.+.+|.+..++.|+.+++++.+++++++.+++++|+++|++++|||++++|++||+|+|||+++++||+..+
T Consensus 198 ~~~p~~e~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~ 277 (372)
T PRK06019 198 VFYPLVENVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEA 277 (372)
T ss_pred EEeCCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhh
Confidence 99999999888898888889999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEE
Q 013695 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~ 241 (438)
+++|+|++|+|+++|+|++.+.. ..+++|++++|... ... .+..++..|+|++|+||+++.+++|+||||++
T Consensus 278 ~~~sqf~~~ira~~Glpl~~~~~-~~~~~m~nilg~~~---~~~----~~~~~~~~~~~~~~~ygk~~~~~~rk~Ghv~~ 349 (372)
T PRK06019 278 CSTSQFEQHLRAILGLPLGTTRL-LSPAVMVNLLGDDW---LEP----RWDALLALPGAHLHLYGKAEARPGRKMGHVTV 349 (372)
T ss_pred cCccHHHHHHHHHcCCCCCCccc-cCceEEEEEECchh---hhh----HHHHHhhCCCCEEEECCCCCCCCCCceEEEEe
Confidence 99999999999999999986543 35689999998641 112 55566778999999999988999999999999
Q ss_pred ecCCHHHHHHHHHHHhh
Q 013695 242 VGSSMGLVESRLNSLLK 258 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~ 258 (438)
.|+|.++++++++.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 350 LGDDVEALLAKLEALAP 366 (372)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 7
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=1.8e-40 Score=371.91 Aligned_cols=357 Identities=16% Similarity=0.170 Sum_probs=285.0
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||++++ ||+||.+++|.+||.++++.+.. ..++++||+||++++|+++++++|.+|
T Consensus 722 ~v~s~eea~~~a~~iGyPvvVKP~~g~-gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G 800 (1102)
T PLN02735 722 IARSEADALAIAKRIGYPVVVRPSYVL-GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEG 800 (1102)
T ss_pred EeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCC
Confidence 367889999999999999999998754 89999999999999999988753 224599999998779999999999888
Q ss_pred eEEEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
++..+++.++.... |+....+++..+++++.+++++++.+++++|+++|++++||+++++|++||+|+|||++++.
T Consensus 801 ~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t~ 880 (1102)
T PLN02735 801 NVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTV 880 (1102)
T ss_pred CEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCccH
Confidence 99888888887643 33344444457999999999999999999999999999999998788999999999999777
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCce
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~ 235 (438)
.++..++|+++.+.+++.++|.+|.+........ . ..++-+-+ +..+.++++++..+ |. +| ++
T Consensus 881 p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~-~-~~~~vk~~----------vf~~~~~~~~d~~l-g~-em---kS 943 (1102)
T PLN02735 881 PFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVI-P-AHVSVKEA----------VLPFDKFQGCDVLL-GP-EM---RS 943 (1102)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCChhhcCCCcccc-c-CeEEEEec----------cCChhhCCCCCCCc-ce-EE---Ee
Confidence 7788889999999999999999976543211000 0 00011111 11134677777655 43 66 78
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHH
Q 013695 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~ 315 (438)
+|+|+++|.|+++|+.|+..+.+. + .|+.+++ ++|.++.|+..+.+.++.|.++||++++| .+ |.
T Consensus 944 tGe~~g~~~~~~~a~~ka~~~~~~-~-----~p~~g~v-liSv~d~~K~~~~~~a~~L~~lG~~i~aT----~G----Ta 1008 (1102)
T PLN02735 944 TGEVMGIDYEFSKAFAKAQIAAGQ-R-----LPLSGTV-FISLNDLTKPHLVPIARGFLELGFRIVST----SG----TA 1008 (1102)
T ss_pred CCceeeecCCHHHHHHHHHhcCCC-c-----cCCCCeE-EEEEecCCchhHHHHHHHHHHCCCEEEEc----cH----HH
Confidence 999999999999999999876642 2 2245666 88889999999999999999999999999 88 99
Q ss_pred HHHHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEEEecCCCC--CCCChhhHHHhhcCCCCCceEEEEeCCcchHH
Q 013695 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVRAS--ALDGLDSLLSIVQMPRGVPVATVAINNATNAG 391 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI~~p~~~~--~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa 391 (438)
+|+ ++.|++|..+.+ .+.+++.++|..+....|||+|.+.. ..||+. +|+.++..||||.|-- +++.|.
T Consensus 1009 ~~L---~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~~~~~~~~~~d~~~--iRr~a~~~~ip~~t~~--~~a~~~ 1081 (1102)
T PLN02735 1009 HFL---ELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQ--LRRMALAYKVPIITTV--AGALAT 1081 (1102)
T ss_pred HHH---HHCCCceEEEeeccCCCccHHHHHHcCCeEEEEECCCCccccccccHH--HHHHHHHcCCCEEecH--HHHHHH
Confidence 999 567999777655 56689999999999999999997432 467888 9999999999999522 255555
Q ss_pred HHHHHHH
Q 013695 392 LLAVRML 398 (438)
Q Consensus 392 ~~a~~il 398 (438)
+.|++.+
T Consensus 1082 ~~~~~~~ 1088 (1102)
T PLN02735 1082 AQAVKSL 1088 (1102)
T ss_pred HHHHHhh
Confidence 5555433
No 8
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.5e-39 Score=365.59 Aligned_cols=357 Identities=17% Similarity=0.207 Sum_probs=283.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.++|.+|+.++++++|||+||||++.+ ||+||.+|+|++||.++++.+....++++||+||+| .|+++++++|++ .+
T Consensus 690 ~~~s~ee~~~~~~~igyPvVVKP~~~~-Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v 766 (1068)
T PRK12815 690 TATDEEEAFAFAKRIGYPVLIRPSYVI-GGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDG-KEYEVDAISDGE-DV 766 (1068)
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecC-ceEEEEEEEcCC-ce
Confidence 367899999999999999999998754 899999999999999999887444456999999997 899999998754 55
Q ss_pred EEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 82 LCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 82 ~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
...++.++.... |+....++|..++++..+++++++.+++++|+++|++|+||++++ |.+|++|+|||++++..+
T Consensus 767 ~i~~i~e~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR~s~t~~~ 845 (1068)
T PRK12815 767 TIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPRASRTVPF 845 (1068)
T ss_pred EEeeEEEEeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCCCCccHHH
Confidence 566777776543 344445678889999999999999999999999999999999974 679999999999987777
Q ss_pred ceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeE
Q 013695 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG 237 (438)
...++|+|+.+.+++.++|.++.+........-....++...+. | .+.++++++..+ |. +| +++|
T Consensus 846 ~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~--f--------~f~~~~~~~~~l-g~-~m---~stG 910 (1068)
T PRK12815 846 VSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPV--F--------SYLKYPGVDNTL-GP-EM---KSTG 910 (1068)
T ss_pred HHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEecc--C--------ChhHcccCCCcc-CC-cc---eEcc
Confidence 77788999999999999999887543210000000001111111 1 124567777655 54 66 7899
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
+||++|.|+++|+.|+..+.+. + .|+.+.| +++.++.|++.+.++++.|.++||++++| .+ |++|
T Consensus 911 e~~~~~~~~~~a~~k~~~~~~~-~-----~p~~~~~-~~~~~~~~k~~~~~~~~~~~~~g~~~~at----~g----t~~~ 975 (1068)
T PRK12815 911 EVMGIDKDLEEALYKGYEASDL-H-----IPSYGTI-FISVRDEDKPEVTKLARRFAQLGFKLLAT----EG----TANW 975 (1068)
T ss_pred eeEeccCCHHHHHHHHHHhcCC-C-----CCCCCeE-EEEecccchHHHHHHHHHHHHCCCEEEEc----cH----HHHH
Confidence 9999999999999999888762 2 2245666 89999999999999999999999999999 78 9999
Q ss_pred HHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHH
Q 013695 318 ASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLA 394 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a 394 (438)
+ ++.|+++..+.+ ++.+++.++|..+....|||+|.+ ....||+. +|+.++..||||.|-- +++.|.+.|
T Consensus 976 l---~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~~~~~~~~~~~~--irr~a~~~~ip~~t~~--~~a~~~~~~ 1048 (1068)
T PRK12815 976 L---AEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIK--IRDEALSTHIPVFTEL--ETAQAFLQV 1048 (1068)
T ss_pred H---HhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHHHH
Confidence 9 677999877765 566899999999999999999975 34567887 9999999999999522 255666666
Q ss_pred HHHHc
Q 013695 395 VRMLG 399 (438)
Q Consensus 395 ~~il~ 399 (438)
++.+.
T Consensus 1049 ~~~~~ 1053 (1068)
T PRK12815 1049 LESLA 1053 (1068)
T ss_pred HHhcC
Confidence 55444
No 9
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1.9e-38 Score=318.99 Aligned_cols=235 Identities=43% Similarity=0.741 Sum_probs=208.1
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.++|.+++.++++++|||+|+||..+|++|+|+++++|++|+.++++.+... .+|+||||++++|+++.++++.+|++
T Consensus 118 ~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~--~~lvEe~I~~~~E~sv~~~~~~~G~~ 195 (352)
T TIGR01161 118 VIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDR--ECIVEEFVPFERELSVIVARSADGET 195 (352)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCC--cEEEEecCCCCeEEEEEEEEcCCCCE
Confidence 3578899999999999999999987667899999999999999999887543 49999999977999999998888999
Q ss_pred EEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceee
Q 013695 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~ 161 (438)
..+|+.++.+.+|.+..++.|+.+++++.+++++++.+++++|+++|++++||+++++|++||+|+|||++++++++..+
T Consensus 196 ~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~ 275 (352)
T TIGR01161 196 AFYPVVENIHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDG 275 (352)
T ss_pred EEECCcccEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhh
Confidence 89999988888888877888999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEE
Q 013695 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~ 241 (438)
+++|+|++|+|+++|+|++.+... .+++|+++++.. ....+ .+..+...|+|++||||+++.+++|+||||..
T Consensus 276 ~~~s~f~~~~ra~~g~~l~~~~~~-~~~~m~n~~~~~--~~~~~----~~~~~~~~~~~~~~~y~k~~~~~~rk~Ghi~~ 348 (352)
T TIGR01161 276 CSTSQFEQHLRAILGLPLGSTELL-LPSVMVNLLGTE--DDVIP----LWEEILALPGAKLHWYGKAEVRPGRKVGHVNL 348 (352)
T ss_pred ccccHHHHHHHHHcCCCCCCcccc-CCEEEEEEecCc--cchHH----HHHHHHhCCCCEEEECCCCCCCCCCcceEEEe
Confidence 999999999999999999986543 448999999863 00112 45556678999999999988899999999999
Q ss_pred ecCC
Q 013695 242 VGSS 245 (438)
Q Consensus 242 ~G~~ 245 (438)
.|+|
T Consensus 349 ~~~~ 352 (352)
T TIGR01161 349 VGSD 352 (352)
T ss_pred ecCC
Confidence 9875
No 10
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=3.2e-38 Score=354.82 Aligned_cols=340 Identities=17% Similarity=0.230 Sum_probs=274.4
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.++|.+|+.++++++|||+||||++. .||+||.+|+|++||.++++++. ...++++|||||+|++|++++++++ +|
T Consensus 689 ~v~s~ee~~~~~~~igyPvIVKP~~~-~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d-~g 766 (1050)
T TIGR01369 689 TATSVEEAVEFASEIGYPVLVRPSYV-LGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSD-GE 766 (1050)
T ss_pred EECCHHHHHHHHHhcCCCEEEEECCC-CCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEe-CC
Confidence 36789999999999999999999875 48999999999999999998864 2234599999999669999999987 46
Q ss_pred eEEEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
++...++++++... |+....++|..++++..+++++++.+++++||++|++|+||+++ +|.+||+|+|||++++.
T Consensus 767 ~v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~-~~~~yvIEvNpR~s~t~ 845 (1050)
T TIGR01369 767 EVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK-DGEVYVIEVNPRASRTV 845 (1050)
T ss_pred EEEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE-CCeEEEEEEeCCCCchH
Confidence 88888888876553 34444455667999999999999999999999999999999997 46799999999998766
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCce
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~ 235 (438)
.+...++|+|+.+.+++.++|.++.+......+.. ..++-+.+.. .+.++++++..+ |. +| ++
T Consensus 846 p~vs~atGi~l~~~~~~~~lG~~l~~~~~~~~~~~--~~~~vK~p~f----------~~~~~~~~d~~l-g~-em---ks 908 (1050)
T TIGR01369 846 PFVSKATGVPLIKLATRVMLGKKLEELGVGKEKEP--KYVAVKEPVF----------SFSKLAGVDPVL-GP-EM---KS 908 (1050)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC--CeEEEEeccC----------ChhhcCCCCCcC-Cc-ee---Ee
Confidence 66677889999999999999999876532100000 0001111111 123577877665 54 67 78
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHH
Q 013695 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~ 315 (438)
+|+|+++|+|+++|+.|+..+.+ ++ .|+.+.| ++++++.|++.+.+.++.|.++||++++| .+ |+
T Consensus 909 tge~~~~g~~~~~a~~ka~~~~~-~~-----~p~~~~~-~~~~~~~~k~~~~~~~~~l~~~g~~~~at----~g----ta 973 (1050)
T TIGR01369 909 TGEVMGIGRDLAEAFLKAQLSSG-NR-----IPKKGSV-LLSVRDKDKEELLDLARKLAEKGYKLYAT----EG----TA 973 (1050)
T ss_pred cCceEecCCCHHHHHHHHHHhCC-CC-----cCCCCeE-EEEeccCchHHHHHHHHHHHHCCCEEEEe----ch----HH
Confidence 99999999999999999988876 22 2244555 99999999999999999999999999999 88 99
Q ss_pred HHHHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCceEE
Q 013695 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip~~t 381 (438)
+|+ ++.|++|..+.+ .+.+++.++|..+....|||+|.. ....+|+. +|+.++..||||.|
T Consensus 974 ~~l---~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~~~~~~~~~~g~~--iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 974 KFL---GEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYK--IRREALDYGVPLIT 1038 (1050)
T ss_pred HHH---HHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECCCCCcccccccHH--HHHHHHHcCCCEEe
Confidence 999 577999877655 556899999999999999999974 23467888 99999999999995
No 11
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.4e-37 Score=350.74 Aligned_cols=352 Identities=17% Similarity=0.230 Sum_probs=278.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||+.+ +||+||.+|+|++||.++++.+.. ..++++||+||+|.+|+++++++|++
T Consensus 689 ~~~s~ee~~~~~~~igyPvvVKP~~~-~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~- 766 (1066)
T PRK05294 689 TATSVEEALEVAEEIGYPVLVRPSYV-LGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGE- 766 (1066)
T ss_pred EECCHHHHHHHHHhcCCCeEEEeCCC-CCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCC-
Confidence 35789999999999999999999765 489999999999999999987642 33569999999996699999998654
Q ss_pred eEEEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
.+...++++++... |+....++|..++++..+++++++.+++++||++|++|+||+++ +|.+||+|+|||++++.
T Consensus 767 ~v~i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~-~~~~yViEiNpR~s~t~ 845 (1066)
T PRK05294 767 DVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK-DDEVYVIEVNPRASRTV 845 (1066)
T ss_pred eEEEeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE-CCeEEEEEEecCCCccH
Confidence 56666777766543 44455567778999999999999999999999999999999997 56799999999999777
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCce
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~ 235 (438)
.+...++|+|+.+..++.++|.++.+..... ...-..++-+.+.. .+.++++++..+ |. +| ++
T Consensus 846 ~~~s~atGi~~~~~~~~~~lG~~l~~~~~~~--~~~~~~~~vk~p~f----------s~~~~~~~~~~l-g~-~m---~s 908 (1066)
T PRK05294 846 PFVSKATGVPLAKIAARVMLGKKLAELGYTK--GLIPPYVAVKEAVF----------PFNKFPGVDPLL-GP-EM---KS 908 (1066)
T ss_pred HHHHHHhCccHHHHHHHHHcCCChhhcCCCc--cCCCCceEEEeccC----------ChhhccCCCCcc-Cc-ee---ee
Confidence 7777788999999999999999887653210 00000001111111 124567777666 54 67 78
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHH
Q 013695 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~ 315 (438)
+|+|+++|.|++||+.|+..+.+. + .|+.+++ +++.++.|+..+.++++.|.++||++++| .+ |+
T Consensus 909 tge~~~~~~~~~~a~~k~~~~~~~-~-----~p~~~~~-lisv~~~dK~~l~~~a~~l~~~G~~i~aT----~g----T~ 973 (1066)
T PRK05294 909 TGEVMGIDRTFGEAFAKAQLAAGN-R-----LPTSGTV-FLSVRDRDKEEVVELAKRLLELGFKILAT----SG----TA 973 (1066)
T ss_pred cCceeecCCCHHHHHHHHHHhccc-c-----cCCCCeE-EEEeccccHHHHHHHHHHHHHcCCEEEEc----cH----HH
Confidence 999999999999999999888752 2 2244566 88889999999999999999999999999 78 99
Q ss_pred HHHHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHH
Q 013695 316 SYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVAINNATNAGL 392 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~ 392 (438)
+|+ ++.|++|..+.. .+.+++.++|..+....|||+|.+ ....+|+. +|+.++..||||.|=- +.+.|.+
T Consensus 974 ~~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~~~~~~~~g~~--iRr~Av~~~ip~~T~~--~~a~~~v 1046 (1066)
T PRK05294 974 KFL---REAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFS--IRRAALEYKVPYITTL--AGARAAV 1046 (1066)
T ss_pred HHH---HHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCCCcccccccHH--HHHHHHHcCCCEEecH--HHHHHHH
Confidence 999 567999877655 456899999999999999999975 33457877 9999999999999522 2445555
Q ss_pred HHH
Q 013695 393 LAV 395 (438)
Q Consensus 393 ~a~ 395 (438)
.|+
T Consensus 1047 ~al 1049 (1066)
T PRK05294 1047 KAI 1049 (1066)
T ss_pred HHH
Confidence 444
No 12
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=6.7e-36 Score=303.41 Aligned_cols=253 Identities=26% Similarity=0.388 Sum_probs=215.1
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCceeEEEEEEEec
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
.+++.+++.++++++|||+|+||.. +++|+|+++|+|++||.++++.+.. .++.+|+||||+++.|+++.++++.
T Consensus 121 ~~~~~~~~~~~~~~~g~P~VvKP~~-g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~ 199 (380)
T TIGR01142 121 FADSLDELREAVEKIGYPCVVKPVM-SSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHV 199 (380)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEECC-CcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcC
Confidence 3678899999999999999999975 5699999999999999999987632 2356999999998789999999877
Q ss_pred CCeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
+|++..+++.++.+.++.+..++.|+.++++..+++++++.+++++||+.|++|+||+++++ .+||+|+|||+|+++++
T Consensus 200 ~g~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~ 278 (380)
T TIGR01142 200 DGNTTFCAPIGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMV 278 (380)
T ss_pred CCCEEEecCcceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceE
Confidence 88876666666666677777778899999999999999999999999999999999999865 69999999999999999
Q ss_pred ceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccC-CCccchhhhHHHHHcCCCcEEEecccccccCCcee
Q 013695 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~i 236 (438)
++.++++|+|++++|+++|+|++.... ..+++|+++++...+. ..+. +++++...|+|++++|+++..+.++++
T Consensus 279 ~~~~~g~~~~~~~~r~~~G~~~~~~~~-~~~~~~~~i~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~k~~~~~~~~~ 353 (380)
T TIGR01142 279 TLISQGLSEFALHVRAILGLPIPGIPQ-LGPAASAVIKAKVTGYSPAFR----GLEKALSVPNTQVRLFGKPEAYVGRRL 353 (380)
T ss_pred EeeecCCCHHHHHHHHHcCCCCCCccc-cCCceEEEEEcccccccchhh----HHHHHHcCCCCEEEECCCCcCCCCCcC
Confidence 988889999999999999999986543 3457788888764332 1122 556666779999999998777888999
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhcc
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
|||++.|+|.+++..+++.+.+.+.
T Consensus 354 G~v~~~~~s~~~~~~~~~~~~~~i~ 378 (380)
T TIGR01142 354 GVALATAKSVEAARERAEEVAHAVE 378 (380)
T ss_pred EEEEEecCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999877653
No 13
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=281.48 Aligned_cols=252 Identities=25% Similarity=0.397 Sum_probs=219.3
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc----CCCCcEEEeeccCCceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG----GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~----~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
++|++|+.++++.+||||++||. .+++|+|..++++++|++++|+.+. ..++++|||+||+.+.|+++..++..+
T Consensus 135 a~s~~e~~~a~~~iGfPcvvKPv-MSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~ 213 (394)
T COG0027 135 ADSLEELRAAVEKIGFPCVVKPV-MSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred cccHHHHHHHHHHcCCCeecccc-cccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEec
Confidence 57899999999999999999996 4568999999999999999999885 235889999999999999999999877
Q ss_pred CeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013695 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
|.-.++.+..|.+.+|+...+|.|..+++...++.+.+++++.++||..|+|++|+|+.. +++||.|+.|||+++|+.+
T Consensus 214 ~~~~Fc~PIGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~g-DeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 214 GTGSFCAPIGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKG-DEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred CCCCcCCCcccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeC-CEEEEeecCCCCCCCceEE
Confidence 765355555777889999999999999999999999999999999999999999999975 5699999999999999999
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEecccccc-CCCccchhhhHHHHHcCCCcEEEecccccccCCceeE
Q 013695 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG-ERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~-~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG 237 (438)
+.+.+.|.|+.|+|+++|+|++.+... .+++...+++.... ...+. ++.+++..|+.++++|||++...+|+||
T Consensus 293 LiSq~lsEF~LH~RAiLGLPi~~i~~~-~P~AS~vI~~~~~~~~~~f~----~l~~AL~~p~t~vRlFGKP~~~~~RRmG 367 (394)
T COG0027 293 LISQDLSEFALHVRAILGLPIPEIRQI-SPAASAVILAQETSQAPTFD----GLAEALGVPDTQVRLFGKPEADGGRRLG 367 (394)
T ss_pred EEeccchHHHHHHHHHhCCCccceeee-cccccceeeccccccCCchh----hHHHHhcCCCceEEEecCCcccCCceee
Confidence 999999999999999999999876653 23333444543221 12344 8888999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHHhhhcc
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
-..++++|.++|++++..+++.+.
T Consensus 368 VALA~a~~Ve~Are~A~~aa~~i~ 391 (394)
T COG0027 368 VALATAESVEEARERARKAASAIE 391 (394)
T ss_pred EEEecCccHHHHHHHHHHHHhhee
Confidence 999999999999999999988764
No 14
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=1.8e-34 Score=294.35 Aligned_cols=253 Identities=28% Similarity=0.441 Sum_probs=213.0
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC----CCcEEEeeccCCceeEEEEEEEec
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF----DRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~----~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
.++|.+|+.++++++|||+|+||. .+++|+|+++|+|++|+.++++.+... .+.+||||||+++.|+++.++++.
T Consensus 134 ~~~s~~~l~~~~~~~g~P~VvKP~-~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~ 212 (395)
T PRK09288 134 FADSLEELRAAVEEIGYPCVVKPV-MSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 212 (395)
T ss_pred EECCHHHHHHHHHhcCCCEEEEeC-CCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcC
Confidence 367899999999999999999997 466999999999999999999876421 256999999997699999999877
Q ss_pred CCeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 78 DKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
+|+...++..++....+++...+.|+.++++..+++++++.+++++|+++|++|+||+++++ .+||+|+|||+++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR~~~~~~~ 291 (395)
T PRK09288 213 DGGTHFCAPIGHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPRPHDTGMV 291 (395)
T ss_pred CCCEEEecCcccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCCCCCCcce
Confidence 66676676666666677777778899999999999999999999999999999999999866 69999999999999999
Q ss_pred ceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccC-CCccchhhhHHHHHcCCCcEEEecccccccCCcee
Q 013695 158 TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKM 236 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~i 236 (438)
++..+++|++++++++++|+|+++... ..++++.++++...+. ..+. +++++...||+.+++|+++..+++|++
T Consensus 292 ~~~~~g~~~~~~~~~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~k~~~~~~~~l 366 (395)
T PRK09288 292 TLISQNLSEFELHARAILGLPIPDIRL-YSPAASAVILAEGESANPSFD----GLAEALAVPGTDVRLFGKPEIRGGRRM 366 (395)
T ss_pred eeeecccCHHHHHHHHHcCCCCCcccc-cCCceeEEEeccccccccchh----hHHHHhcCCCCEEEEecCCCCCCCCee
Confidence 888889999999999999998865443 2345677777654332 1223 555556679999999998777788999
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhcc
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
|||++.|+|.++|+.+++++.+.++
T Consensus 367 G~v~~~g~~~~~a~~~~~~~~~~i~ 391 (395)
T PRK09288 367 GVALATGEDVEEAREKAKEAASKVK 391 (395)
T ss_pred EEEEeecCCHHHHHHHHHHHHhhee
Confidence 9999999999999999999988775
No 15
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=100.00 E-value=1.2e-32 Score=247.07 Aligned_cols=159 Identities=43% Similarity=0.748 Sum_probs=146.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.++|.+|+.++++++|||+|+|+..+||+|+|++++++.+|+.++++.+...+ +|+|+|++..+|+|+.++++.+|++
T Consensus 13 ~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~--~ilE~~v~f~~EiSvivaR~~~G~~ 90 (172)
T PF02222_consen 13 TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGP--CILEEFVPFDREISVIVARDQDGEI 90 (172)
T ss_dssp EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSC--EEEEE---ESEEEEEEEEEETTSEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCc--EEEEeccCCcEEEEEEEEEcCCCCE
Confidence 47899999999999999999999889999999999999999999999986555 9999999999999999999999999
Q ss_pred EEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCc-EEEEEEcCCCCCCCCccee
Q 013695 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQ-ILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~-~~viEiNpR~~~~~~~~~~ 160 (438)
.+||+.|+.+.+|++..++.|+++++++.+++++++.+++++|++.|++.||||++++|+ +||+|+.||+++|||||+.
T Consensus 91 ~~yp~~en~~~~~il~~s~~Pa~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~Ti~ 170 (172)
T PF02222_consen 91 RFYPPVENVHRDGILHESIAPARISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWTIE 170 (172)
T ss_dssp EEEEEEEEEEETTEEEEEEESCSS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEESS--GGGGGHHH
T ss_pred EEEcCceEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCEEEEEeccCCccCcccEeee
Confidence 999999999999999999999999999999999999999999999999999999999997 9999999999999999987
Q ss_pred ec
Q 013695 161 SC 162 (438)
Q Consensus 161 ~~ 162 (438)
+|
T Consensus 171 ~c 172 (172)
T PF02222_consen 171 AC 172 (172)
T ss_dssp HB
T ss_pred cC
Confidence 65
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.98 E-value=3.6e-31 Score=275.06 Aligned_cols=334 Identities=19% Similarity=0.211 Sum_probs=266.9
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
+.+|.+|+.+|++++||||+|+|++-- +|..|.++++++||+.+++.+. +.+.++++.+||+|++|++++++. .+|
T Consensus 1053 elt~~~eA~~F~~~VgYP~lvRPSYVL-SGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa-~~G 1130 (1435)
T KOG0370|consen 1053 ELTSLEEAKKFAEKVGYPVLVRPSYVL-SGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVA-SDG 1130 (1435)
T ss_pred hhccHHHHHHHHHhcCCceEeccccee-cchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhc-cCC
Confidence 368999999999999999999999832 5899999999999999999875 233459999999999999999986 689
Q ss_pred eEEEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
++....++||++.. |+.+...+|..++++..+++++++.++++++...|+||+||+.. ++++.|||+|-|.+++.
T Consensus 1131 ~~~~haiSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k-~n~lkVIECN~RaSRSF 1209 (1435)
T KOG0370|consen 1131 KVLVHAISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK-DNELKVIECNVRASRSF 1209 (1435)
T ss_pred eEEEEehhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec-CCeEEEEEeeeeeeccc
Confidence 99999999998764 56677788999999999999999999999999999999999874 66899999999999999
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCce
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRK 235 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~ 235 (438)
++..+..|+|+.+...|+++|.|++......+..+ +.+-|..++. ++.|.|+.+ |- +| .+
T Consensus 1210 PFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV-----~vKvPqFSf~----------RLagADp~L-gv-EM---aS 1269 (1435)
T KOG0370|consen 1210 PFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYV-----AVKVPQFSFS----------RLAGADPVL-GV-EM---AS 1269 (1435)
T ss_pred cceehhcCchHHHHHHHHHhCCCCCCccccCCCeE-----EEEccccccc----------cccCCCcee-ee-Ee---cc
Confidence 99999999999999999999988765543222121 1122223333 456777655 44 55 57
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHH
Q 013695 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~ 315 (438)
+|+|.++|.+.-||+-++..... ++. +.+.+.|..||+ ++.+...++.|.++||+++++ .+ |.
T Consensus 1270 TGEVAcFG~~~~eaylkam~sTg-F~i------Pk~~i~i~ig~~--k~ell~~~~~l~~~gy~lyat----~~----t~ 1332 (1435)
T KOG0370|consen 1270 TGEVACFGEDRYEAYLKAMLSTG-FKI------PKKNILISIGSY--KPELLPSARDLAKLGYKLYAT----NG----TA 1332 (1435)
T ss_pred ccceeecccchHHHHHHHHHhcC-ccc------cCCCeEEEeccc--hHHHHHHHHHHHhcCceeEEe----cc----ch
Confidence 89999999999999999988877 332 245676777765 999999999999999999999 77 66
Q ss_pred HHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEE
Q 013695 316 SYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~t 381 (438)
+|+. +.+-.++ .--+-...|...++.+....|||.|-. +-...|+. .|++++..+||..|
T Consensus 1333 d~~~--~~~~~~~--~~~~~~~~l~~~~~~~~i~lvinlpr~~~~~~~~Y~--~RR~AvD~~ipLit 1393 (1435)
T KOG0370|consen 1333 DFYL--ENKYAEV--SEEPTNDKLRELLANYNIDLVINLPRPSSFVDHGYK--TRRLAVDFSIPLIT 1393 (1435)
T ss_pred hhhh--ccCChhh--ccCCChHHHHHHHhcCceeEEEecCCcccccccCce--eeeeecccCCceee
Confidence 6553 2222333 111111348888999999999999953 22344655 89999999999885
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.97 E-value=4.6e-29 Score=258.62 Aligned_cols=285 Identities=20% Similarity=0.258 Sum_probs=204.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+|+.++++++|||+||||..++ ||+|+++++|.+||.++++.+.. ..+.++|||||+|.+|+++.++.|
T Consensus 138 ~~~~~e~~~~~~~ig~PvvvKP~~g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d 216 (449)
T TIGR00514 138 VEDEEENVRIAKRIGYPVIIKATAGG-GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLAD 216 (449)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEc
Confidence 56889999999999999999997755 89999999999999999876521 235699999999888999999998
Q ss_pred cCCeEEEEeeee-eEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCYPVVE-TIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~e-~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++..+...+ .............|. .+++++.+++++.+.+++++||+.|++|+||+++++|.+||+|+|||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 217 KYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 888876653221 112212112223444 489999999999999999999999999999999988889999999999987
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCCC---CCceEEEEeccccccCCCccchhhhHHH--HHcCCCcEEEecccc-
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMK---TPAAIMYNLLGEAEGERGFYLAHQLIGK--ALSIPGATVHWYDKP- 228 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~---~~~~~~~~il~~~~~~~~~~~~~~~i~~--~~~~pg~~~~~~~~~- 228 (438)
.+++..++|+|+++.+++.++|.+++..... ...++..++.... +...+.+....+.. +...||+.+..+.+.
T Consensus 297 ~~~~~~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~-~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G 375 (449)
T TIGR00514 297 HPVTEMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAED-PIKTFLPSPGRITRYLPPGGPGVRWDSHVYSG 375 (449)
T ss_pred cceeehhcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeeccC-CCCCeeeCCCEEEEEEcCCCCCEeeccCccCC
Confidence 7777788999999999999999998753221 1224444444432 21111111011111 112344433221110
Q ss_pred -cc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 229 -EM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 229 -~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
.. ....++|+|++.|+|.+||++++.++++.+ .+.|..++.+.+..+...=....-.++.+
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~--------------~i~g~~tn~~~l~~~~~~~~f~~~~~~t~ 439 (449)
T TIGR00514 376 YTVPPYYDSMIGKLITYGKTREVAIARMKRALSEF--------------IIDGIKTTIPFHQRILEDENFQHGGTNIH 439 (449)
T ss_pred CEeCccccccceEEEEEcCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhcChhhcCCceeeh
Confidence 11 112589999999999999999999999875 35677889999998887655443344333
No 18
>PRK05586 biotin carboxylase; Validated
Probab=99.97 E-value=4.2e-29 Score=258.70 Aligned_cols=278 Identities=20% Similarity=0.272 Sum_probs=203.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+.+.+|+.++++++|||+||||..+| +|+|+++++|++|+.++++.+.. ..+.+++|+||+|.+|+++.+++
T Consensus 137 ~~~~~~e~~~~~~~igyPvvvKP~~gg-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~ 215 (447)
T PRK05586 137 EIENEEEALEIAKEIGYPVMVKASAGG-GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILG 215 (447)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEE
Confidence 357889999999999999999997765 89999999999999998875421 12469999999988999999999
Q ss_pred ecCCeEEEEeeee-eEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 76 GRDKSILCYPVVE-TIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~e-~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.+|++..+...+ ..+..+.......|. .+++++.+++++++.+++++||+.|++++||+++++|++||+|+|||+++
T Consensus 216 d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~ 295 (447)
T PRK05586 216 DNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQV 295 (447)
T ss_pred CCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCC
Confidence 8888877664322 123333223334565 48999999999999999999999999999999998899999999999998
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeccccccCCCccchhhhHHHHHcCCC---cEEE--ec
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG---ATVH--WY 225 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg---~~~~--~~ 225 (438)
+.+++..++|+|+++.+++.++|.+++.... . ..+++..++..+. +...+.+....+.. ...|+ +.+. .+
T Consensus 296 ~~~~t~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~~-~~~~~~p~~G~~~~-~~~~~~~~vr~~~~~~ 373 (447)
T PRK05586 296 EHPITEMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAED-PKNGFMPCPGKIEE-LYIPGGLGVRVDSAVY 373 (447)
T ss_pred CccceehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeeccC-cccCccCCCCEEEE-EEcCCCCCeEeecccc
Confidence 8888888999999999999999999875322 1 2234444555432 11112110001111 12232 2221 11
Q ss_pred -ccc-cccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc
Q 013695 226 -DKP-EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 226 -~~~-~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~ 296 (438)
|.. ......++|+|++.|+|.++|++++.+++..+ .+.|...+.+.+..+...-...
T Consensus 374 ~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~--------------~~~g~~~~~~~~~~~~~~~~~~ 432 (447)
T PRK05586 374 SGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEF--------------IIEGVNTNIDFQFIILEDEEFI 432 (447)
T ss_pred CCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhCCHhhc
Confidence 110 11112589999999999999999999999865 3456778899888887664443
No 19
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=1.1e-29 Score=285.88 Aligned_cols=243 Identities=19% Similarity=0.208 Sum_probs=201.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~--~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||+. +++|+|+.+++|++||.++++..... .+.+|||+||+|.+|+++++++|.+|
T Consensus 148 ~v~s~ee~~~~~~~igyPvVVKP~~-g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g 226 (1068)
T PRK12815 148 IVTSVEEALAFAEKIGFPIIVRPAY-TLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNG 226 (1068)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECc-CCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCC
Confidence 4678999999999999999999975 56899999999999999999766532 25699999999988999999999989
Q ss_pred eEEEEeeeeeEEecCee---eEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC-CcEEEEEEcCCCCCC
Q 013695 80 SILCYPVVETIHKENIC---HIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNS 154 (438)
Q Consensus 80 ~~~~~~~~e~~~~~g~~---~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~~ 154 (438)
++..++..+++...|.. ...+.|+ .++++..+++++++.+++++||++|++|+||+++++ |++||+|+|||++++
T Consensus 227 ~~~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s 306 (1068)
T PRK12815 227 NCITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRS 306 (1068)
T ss_pred CEEEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccc
Confidence 98888887776544432 3345677 589999999999999999999999999999999875 689999999999999
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEecccccccCC
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQQ 233 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~~~g 233 (438)
++++..++|+++.+..++.++|.++++..... ++... ..+++ .++. +.+.|.|.+++|++.+.+.+
T Consensus 307 ~~l~~~atG~pl~~~~~~~alG~~l~ei~~~i--------~g~~~--a~~ep---~~d~~~~k~p~~~f~~y~~~~~~~g 373 (1068)
T PRK12815 307 SALASKATGYPIAKIAAKLAVGYTLNELKNPV--------TGLTY--ASFEP---ALDYVVVKFPRWPFDKFGYADRTLG 373 (1068)
T ss_pred hhhhhHhhCCcHHHHHHHHHcCCChHHhcCCc--------cCCcc--cccCC---ccceEEEEeccCccccccCcccccc
Confidence 99999999999999999999999988754311 11110 01110 2222 34679999999998788888
Q ss_pred cee---EEEEEecCCHHHHHHHHHHHhh
Q 013695 234 RKM---GHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 234 ~~i---G~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
++| |||+++|+|+++|+.|+.++++
T Consensus 374 ~kmks~G~v~~ig~~~eea~~ka~~~~~ 401 (1068)
T PRK12815 374 TQMKATGEVMAIGRNFESAFQKALRSLE 401 (1068)
T ss_pred ceecccceEEEecCCHHHHHHHHHHhhc
Confidence 988 9999999999999999999876
No 20
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.97 E-value=8.5e-29 Score=258.23 Aligned_cols=287 Identities=19% Similarity=0.245 Sum_probs=213.8
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+|+.++++++|||+||||+.+| ||+||++|+|++||.++++.+.. ..+.+++|+||++.+|+++.+++|
T Consensus 138 v~~~~e~~~~a~~igyPvvIKp~~Gg-GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d 216 (499)
T PRK08654 138 IEDIEEAKEIAEEIGYPVIIKASAGG-GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILAD 216 (499)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCC-CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEc
Confidence 67899999999999999999998766 89999999999999999886531 135699999999889999999999
Q ss_pred cCCeEEEEeeee-eEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCYPVVE-TIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~e-~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++..++..+ .+++.+.......|++ ++++++++|.+.+.++++++||.|++++||+++ +|++||+|+|||++.+
T Consensus 217 ~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 217 KHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred CCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCC
Confidence 888876554332 3333333333456765 899999999999999999999999999999996 6789999999999977
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHHHH--cCCCcEEE--eccc
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATVH--WYDK 227 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~~~--~~~~ 227 (438)
.+++...+|+|+++.+++.++|.+++.... ..+.++.+++..+.. ...+.|....+..+. ..|++.+. ++.+
T Consensus 296 h~vte~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae~p-~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g 374 (499)
T PRK08654 296 HPITEMVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDP-LNDFAPSPGKIKRYRSPGGPGVRVDSGVHMG 374 (499)
T ss_pred CceeehhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEeecC-ccCcCCCCCeEEEEEcCCCCCEEEECcccCC
Confidence 778888899999999999999999875432 123455666665432 112221111222211 12333322 1211
Q ss_pred ccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE
Q 013695 228 PEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 228 ~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
... .-...+|+|++.|+|+++|++++.++++.+ .+.|-.++.+.+..+...-....-.++.+++
T Consensus 375 ~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~ 440 (499)
T PRK08654 375 YEIPPYYDSMISKLIVWGRTREEAIARMRRALYEY--------------VIVGVKTNIPFHKAVMENENFVRGNLHTHFI 440 (499)
T ss_pred CCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhCCHhhcCCCccchhh
Confidence 111 112468999999999999999999999864 4566788999999998877766666776655
Q ss_pred e
Q 013695 306 S 306 (438)
Q Consensus 306 s 306 (438)
-
T Consensus 441 ~ 441 (499)
T PRK08654 441 E 441 (499)
T ss_pred h
Confidence 3
No 21
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.97 E-value=2.1e-28 Score=254.70 Aligned_cols=286 Identities=18% Similarity=0.220 Sum_probs=208.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+++.++++++|||+||||..+| ||+||++|+|++||.++++.+. .....+++|+||++.+|+++++++|
T Consensus 137 ~~~~~e~~~~~~~igyPvvvKp~~gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d 215 (472)
T PRK07178 137 LADLDEALAEAERIGYPVMLKATSGG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILAD 215 (472)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEE
Confidence 57889999999999999999998766 8999999999999999887642 1234599999999889999999998
Q ss_pred cCCeEEE-EeeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++.. ++..+..++.+.......|+ .+++++++++++.+.+++++|||.|++++||+++++|++||+|+|||++++
T Consensus 216 ~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 216 SHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred CCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 8888654 44434444433333445666 599999999999999999999999999999999878889999999999987
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeccccccCCCccchhhhHHHH--HcCCCcEEEe--ccc
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATVHW--YDK 227 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~--~~~pg~~~~~--~~~ 227 (438)
.+++...+|+|+++++++.++|.|++.... . ...++.+++..+. +...+.|....+..+ ...|++.+.. +..
T Consensus 296 ~~~te~~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g 374 (472)
T PRK07178 296 HTITEEITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAED-PKNDFLPSFGKITRYYAPGGPGVRTDTAIYTG 374 (472)
T ss_pred ccceeeeeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeeec-CCcCEecCceEEEEEEcCCCCCeEEEecccCC
Confidence 778878899999999999999999975422 1 2334544555432 221122111111111 1123433222 111
Q ss_pred ccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013695 228 PEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 228 ~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v 304 (438)
....+ ..-+|+|++.|+|+++|+.++.++++++ .+.|-.++.+.+..+...-+...-.++.++
T Consensus 375 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~ 439 (472)
T PRK07178 375 YTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDM--------------RVQGVKTTIPYYQEILRNPEFRSGQFNTSF 439 (472)
T ss_pred CEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhcCHhhcCCCccchh
Confidence 11111 1134999999999999999999999875 345567889999888877665554555443
No 22
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.97 E-value=1.5e-28 Score=255.52 Aligned_cols=286 Identities=17% Similarity=0.228 Sum_probs=205.7
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..+| +|+|+++++|++||.++++.+.. ..+.++||+||++++|+++++++
T Consensus 140 ~v~~~~e~~~~~~~igyPvvvKp~~gg-gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~ 218 (467)
T PRK12833 140 VVASLDAALEVAARIGYPLMIKAAAGG-GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILG 218 (467)
T ss_pred CcCCHHHHHHHHHHhCCCEEEEECCCC-CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEe
Confidence 457899999999999999999998766 89999999999999998865421 23569999999977999999998
Q ss_pred ecCCeEEEEeeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013695 76 GRDKSILCYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
|+++.+..+...+..++.........|. .++++..+++++.+.+++++|||+|++++||++++ +|.+||+|+|||+++
T Consensus 219 dg~~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~ 298 (467)
T PRK12833 219 DGERVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQV 298 (467)
T ss_pred CCCcEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCc
Confidence 7664444444333333323333334555 48999999999999999999999999999999984 678999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHHH--HcCCCcEEE--ecc
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATVH--WYD 226 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~~--~~~pg~~~~--~~~ 226 (438)
+..++...+|+|+++.+++.++|.|+..... ..+.++.+++..+. +...+.+....+..+ ...||+.+. .+.
T Consensus 299 ~~~~te~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~ 377 (467)
T PRK12833 299 EHPVTEAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAED-PLRDFFPNPGRIDALVWPQGPGVRVDSLLYP 377 (467)
T ss_pred chhhhHHHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEeccc-CCCCcccCCCEEEEEEcCCCCCeEEecceeC
Confidence 7667777899999999999999999875321 12335555665442 211111111111111 123554332 111
Q ss_pred ccccc--CCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 227 KPEMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 227 ~~~~~--~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
..... ...++|+|++.|+|+++|+.++.++++.+ .+.|..++.+.+..+...-+...-.++.+
T Consensus 378 G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~~~~~~~~t~ 442 (467)
T PRK12833 378 GYRVPPFYDSLLAKLIVHGEDRAAALARAARALREL--------------RIDGMKTTAPLHRALLADADVRAGRFHTN 442 (467)
T ss_pred cCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhc--------------EeECccCCHHHHHHHhcChhhcCCCcccH
Confidence 11111 12478999999999999999999999876 35666789999988887755544445544
No 23
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=3.8e-29 Score=282.43 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=198.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||+. |++|+|+.+|+|++||.+++++... ..+.+|||+||+|.+|+++.+++|.+|
T Consensus 148 ~v~s~~e~~~~~~~ig~PvVVKP~~-g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 148 IAHSMEEALEVAEEIGYPVIIRPSF-TLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred eeCCHHHHHHHHHHcCCCeEEEcCC-CCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCC
Confidence 4678999999999999999999975 5699999999999999999886542 235699999999988999999999999
Q ss_pred eEEEEeeeeeEEe----cCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013695 80 SILCYPVVETIHK----ENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~-~g~~~viEiNpR~~ 152 (438)
++..++..+++.. .|.. ..+.|+ .++++..+++++++.+++++||++ |++|+||++++ +|++||+|+|||++
T Consensus 227 ~~~~~~~~e~~dp~gih~g~~-~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 227 NCIIVCSIENIDPMGVHTGDS-ITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred CEEEEeeeeeccccceecCCe-EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCC
Confidence 9888887776521 2322 345677 689999999999999999999999 99999999984 67899999999999
Q ss_pred CCCCcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEec-cccccCCCccchhhhHHH-HHcCCCcEEEecccccc
Q 013695 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLL-GEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (438)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il-~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~ 230 (438)
+++.++...+|.++.+..++.++|.++.... +++ |... ..+++ .++. +.+.|+|++|+|++.+.
T Consensus 306 ~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~---------n~~~g~~~--~~~~p---~~~~v~~k~p~~~~~~y~k~~~ 371 (1066)
T PRK05294 306 RSSALASKATGYPIAKVAAKLAVGYTLDEIK---------NDITGKTP--ASFEP---SLDYVVTKIPRFAFEKFPGADR 371 (1066)
T ss_pred cceeeeeHhhCCCHHHHHHHHHcCCChHHhc---------CcccCCCc--ccccc---cCCeEEEEccCCccccccCCCC
Confidence 9998877789999999999999998875433 223 2211 01210 2333 34679999999998888
Q ss_pred cCC---ceeEEEEEecCCHHHHHHHHHHHhh
Q 013695 231 RQQ---RKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 231 ~~g---~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
+.| |++|||+++|+|+++|+.|+.++++
T Consensus 372 ~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~ 402 (1066)
T PRK05294 372 RLGTQMKSVGEVMAIGRTFEESLQKALRSLE 402 (1066)
T ss_pred CccceecccceEEEEcCCHHHHHHHHHHhcC
Confidence 888 9999999999999999999999875
No 24
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.97 E-value=1.1e-28 Score=229.47 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=144.3
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
++|.+|+.++++++|||++|||++++ ||+|+.+++|.+||.++++.... ..+.+++|+|+++.+|+.+++++|
T Consensus 24 ~~~~eea~~~a~~iGyPVliKas~gg-GG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D 102 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKASAGG-GGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRD 102 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEETTSS-TTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEeecccc-cccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhc
Confidence 58999999999999999999999866 89999999999999999977531 135699999999989999999999
Q ss_pred cCCeEEEEeeeeeEEe--cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013695 77 RDKSILCYPVVETIHK--ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~e~~~~--~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
+.|+++.....|+... .++.....+|..|+++.+++|++.+.+++++++|+|++++||.+++ +|++||+|+|||++.
T Consensus 103 ~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~ 182 (211)
T PF02786_consen 103 GKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQR 182 (211)
T ss_dssp TTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--T
T ss_pred cccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCC
Confidence 9998877766665533 3444444444459999999999999999999999999999999987 789999999999998
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCC
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~ 181 (438)
+..++.+.+|+|+.+.+++.++|.+|.+
T Consensus 183 ~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 183 EHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp THHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred cchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 8889999999999999999999999875
No 25
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.96 E-value=7.8e-28 Score=250.74 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=204.9
Q ss_pred cCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEEEec
Q 013695 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
.+.+|+.++++++|||+|+||..++ ||+|+++++|++|+.++++.+. ...+.+++|+||++.+|+++.+++|.
T Consensus 139 ~~~~~~~~~~~~igyPvvvKP~~gg-Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~ 217 (478)
T PRK08463 139 ESMEEIKIFARKIGYPVILKASGGG-GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDN 217 (478)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcC
Confidence 5789999999999999999998755 8999999999999999887532 12356999999998899999999887
Q ss_pred CCeEEEEe-eeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 78 DKSILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 78 ~G~~~~~~-~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
.|++..+. ..+..+..+.....+.|++ +++++++++++.+.+++++||+.|++++||+++++|++||+|+|||++++.
T Consensus 218 ~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~ 297 (478)
T PRK08463 218 YGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEH 297 (478)
T ss_pred CCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCc
Confidence 78765432 1112233233334456775 999999999999999999999999999999998878899999999999888
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHHHH--cCCCcEEE--ecccc
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATVH--WYDKP 228 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~~~--~~~~~ 228 (438)
+++...+|+|+++.+++.++|.+++.... ....++.+++..+. +...+.|....+..+. .-|++.+. .+...
T Consensus 298 ~~te~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~ 376 (478)
T PRK08463 298 GVTEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAEN-VWKNFIPSPGKITEYYPALGPSVRVDSHIYKDY 376 (478)
T ss_pred ceeeHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccC-cccCeecCCcEEEEEEcCCCCCeeEeccccCCC
Confidence 88888999999999999999998864321 12334444555432 1111211111111110 01232221 11111
Q ss_pred cc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 229 EM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 229 ~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
.. .....+|++++.|+|+++|+.++.++++.+ .+.|..++.+.+..+...-+...-.++.+
T Consensus 377 ~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~--------------~i~g~~t~~~~~~~~~~~~~f~~~~~~t~ 439 (478)
T PRK08463 377 TIPPYYDSMLAKLIVKATSYDLAVNKLERALKEF--------------VIDGIRTTIPFLIAITKTREFRRGYFDTS 439 (478)
T ss_pred EeCcccccceeEEEEECCCHHHHHHHHHHHHhhc--------------EEeCccCCHHHHHHHhCCHHHhCCCccch
Confidence 11 112589999999999999999999998865 45677889999888887755544444444
No 26
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.96 E-value=1.2e-28 Score=277.65 Aligned_cols=242 Identities=20% Similarity=0.239 Sum_probs=197.7
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCC--CcEEEeeccCCceeEEEEEEEecCC
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFD--RGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~--~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||+. +++|+|+.+++|++||.+++......+ +.+||||||+|.+|+++++++|.+|
T Consensus 147 ~v~s~~e~~~~~~~igyPvIVKP~~-g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~~g 225 (1050)
T TIGR01369 147 IAHSVEEALAAAKEIGYPVIVRPAF-TLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSND 225 (1050)
T ss_pred ecCCHHHHHHHHHHhCCCeEEECCC-CCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeCCC
Confidence 4678999999999999999999975 569999999999999999887765432 5699999999989999999999888
Q ss_pred eEEEEeeeeeEEe----cCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013695 80 SILCYPVVETIHK----ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~ 153 (438)
++..++..+++.. .|.. ..+.|+. ++++..+++++++.+++++||+.|.+|+||+++++ |++||+|+|||+++
T Consensus 226 ~~~~~~~~e~~~p~gvh~g~~-i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 226 NCITVCNMENFDPMGVHTGDS-IVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred CEEEEeeceeccCcceecCce-EEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 8888777776522 2332 3456775 89999999999999999999999999999999864 78999999999999
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEecccccccC
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQ 232 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~~~ 232 (438)
+++++..++|+++.+..++.++|.++...... +++... ..+++ .++. ..+.|.|.+++|++.+.+.
T Consensus 305 s~~l~s~atG~pl~~~~~~~alG~~l~~~~n~--------i~g~~~--~~~~p---~~~~~~~k~p~~~~~~~~~~~~~~ 371 (1050)
T TIGR01369 305 SSALASKATGYPIAKVAAKLAVGYGLDELKNP--------VTGTTP--ASFEP---SLDYVVVKIPRWDFDKFAGVDRKL 371 (1050)
T ss_pred chhhhhHHhCCCHHHHHHHHHcCCCchhhcCC--------CcCcCc--cccCc---CCCeEEEEEEeCCCCCCCcccCCc
Confidence 99988889999999999999999988754421 122211 01210 2222 2356999999998877777
Q ss_pred Cce---eEEEEEecCCHHHHHHHHHHHhh
Q 013695 233 QRK---MGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 233 g~~---iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
+++ +|||+++|+|+++|+.|+.++++
T Consensus 372 ~~~~k~~G~v~~~g~~~~ea~~ka~~~~~ 400 (1050)
T TIGR01369 372 GTQMKSVGEVMAIGRTFEEALQKALRSLE 400 (1050)
T ss_pred CcccceeeEEEEECCCHHHHHHHHHHHhc
Confidence 777 99999999999999999999876
No 27
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.96 E-value=1.3e-27 Score=247.97 Aligned_cols=286 Identities=19% Similarity=0.253 Sum_probs=201.9
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++|||+||||..++ +|+|+++|+|.+||.++++.+.. ..+.+++||||+|.+|+++.+++
T Consensus 137 ~v~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (451)
T PRK08591 137 PVDDEEEALAIAKEIGYPVIIKATAGG-GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLA 215 (451)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 357899999999999999999997765 89999999999999999987531 13469999999987899999999
Q ss_pred ecCCeEEEEeeee-eEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 76 GRDKSILCYPVVE-TIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~e-~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|++|++..+...+ .....+.......|+ .++++..+++++.+.+++++||+.|++++||+++++|++||+|||||+++
T Consensus 216 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~ 295 (451)
T PRK08591 216 DGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQV 295 (451)
T ss_pred cCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCc
Confidence 8888876543211 122222223334555 48999999999999999999999999999999987888999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeccccccCCCccchhhhHHHH--HcCCCcEEEec---
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGATVHWY--- 225 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~--~~~pg~~~~~~--- 225 (438)
+.+++..++|+|+++.+++.++|.|++.... . ...++...+.... +...+.+....+..+ ...|++.+...
T Consensus 296 ~~~~~~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~-~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~ 374 (451)
T PRK08591 296 EHPVTEMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAED-PAKNFMPSPGKITRYHPPGGPGVRVDSAVYT 374 (451)
T ss_pred cchhhhhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeec-CccCcccCCCEeeEEEcCCCCCeeecccccC
Confidence 7667777899999999999999999875332 1 1223322332221 111111100011111 01223322221
Q ss_pred ccc-cccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 226 DKP-EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 226 ~~~-~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
|.. ......++|+|++.|+|.+++.+++.++++.+. +.|-.++.+.+..+...=+...-.++.+
T Consensus 375 g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~--------------i~g~~tn~~~~~~~~~~~~f~~~~~~t~ 439 (451)
T PRK08591 375 GYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFV--------------IDGIKTTIPLHLRLLNDPNFQAGDYNIH 439 (451)
T ss_pred CCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCE--------------EECCCCCHHHHHHHhcCHhhhCCCcccH
Confidence 110 011225899999999999999999999998763 4566789999988887755444344333
No 28
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.6e-30 Score=249.63 Aligned_cols=366 Identities=31% Similarity=0.306 Sum_probs=285.4
Q ss_pred EEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEE
Q 013695 57 LYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (438)
Q Consensus 57 ~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~ 136 (438)
+..+++.+..+++....+++-.+-...++.++.+..+..+.....|.. +++.+..-.+......|.+-|.+.++.++
T Consensus 3 l~~~~~~~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~---~I~~ka~il~k~t~~~F~~l~~~gv~~~~ 79 (373)
T KOG2835|consen 3 LTTESLDPLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMAN---SIQGKAAILNKITSFVFELLGEAGIETAF 79 (373)
T ss_pred cccccccchhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhhc---chhhHHHHHHHhhhhhHhhhhhhhhheee
Confidence 456677776678888888877776777888888888887776666663 33333333333333334444666678888
Q ss_pred eCCCcEEEEEEcCCCCCCCCcceeeccCcHHHHHHHHHhCCCCCCCCCC----CCceEEEEeccccccCCCccchhhhHH
Q 013695 137 TNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK----TPAAIMYNLLGEAEGERGFYLAHQLIG 212 (438)
Q Consensus 137 ~~~g~~~viEiNpR~~~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~----~~~~~~~~il~~~~~~~~~~~~~~~i~ 212 (438)
+.++..-..|++||+..+++|+...+.+++|..+.+.+.+++....... -..+.|-++.++.... .+. ..-+.
T Consensus 80 ~~~~~~t~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~-~~~--~~li~ 156 (373)
T KOG2835|consen 80 TEQCGETAFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQII-DCA--GLLIG 156 (373)
T ss_pred ccccchhhhhcCCCCCCCceeEEeecchhhHHHhCccCccceeecCccccccccchhhcCcccchhhhh-hhh--hhhcc
Confidence 8776566889999999999999999999999999999888776443221 1123344444432110 000 00001
Q ss_pred HHHcCCCcEEEecccccccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHH
Q 013695 213 KALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 213 ~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~ 292 (438)
.....++..++++.. ++...+.+||...++++..+............. ......+.+.|++++|...+...+..
T Consensus 157 r~~~~~~~~~~~~if-es~k~~~~~h~~~I~d~~ie~gv~~~~~~~~~a-----~~v~~~~~~r~~~~~d~~im~D~~~~ 230 (373)
T KOG2835|consen 157 RDEVKIMQKLPLYIF-ESLKAAWAGHNCAISDMKIEFGVDVTLGEIVLA-----SDVIDNDSWRMWPDGDGRIMKDKKVY 230 (373)
T ss_pred hhhcccccccccchh-hhhhhhhcCCccccccchhhhccchhhhhhhhh-----hcccchhheEEcccCCcceeeeeeEE
Confidence 112245556777777 666778899999999998887766644433221 01234667899999999999999999
Q ss_pred HHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhc
Q 013695 293 LTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQ 372 (438)
Q Consensus 293 L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~ 372 (438)
+...++..+..+.++|++|....+|...+..+|+.+.++.|+..+|+|++++..+..| ++|+.....+|.|+++|.+|
T Consensus 231 ~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~~V~ 308 (373)
T KOG2835|consen 231 FDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLSIVQ 308 (373)
T ss_pred eccccCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--Ccceeeeeccccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999 99988778999999999999
Q ss_pred CCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013695 373 MPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYL 436 (438)
Q Consensus 373 ~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
||.|+|++|++|+++.|||.+|+++|++.|+.||.|++.++++|++.+.+++++|+..+|+.|.
T Consensus 309 ~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~Kle~~~~~~~~ 372 (373)
T KOG2835|consen 309 MPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRKLETVGWEPYS 372 (373)
T ss_pred ccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcccccHHHHHHhhhHhhccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999885
No 29
>PLN02735 carbamoyl-phosphate synthase
Probab=99.96 E-value=1.4e-27 Score=268.18 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=187.3
Q ss_pred cccCHHHHHHHHHhhC-CcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCceeEEEEEEEecC
Q 013695 2 EVNDLESAWRAGKQFG-YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 2 ~v~s~ee~~~~~~~ig-yPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
.+++.+++.++++++| ||+||||+. +++|+|+.+|+|++||.++++.+. ...+.+||||||.|.+|+++++++|.+
T Consensus 164 ~v~s~eea~~~~~~iG~yPvVVKP~~-~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~ 242 (1102)
T PLN02735 164 IATTLDECFEIAEDIGEFPLIIRPAF-TLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLA 242 (1102)
T ss_pred EeCCHHHHHHHHHHhCCCCEEEEeCC-CCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCC
Confidence 3578899999999999 999999976 458999999999999999998764 344679999999988999999999877
Q ss_pred CeEEEEeeeeeEEe----cCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCc-eeEEEEEEEEeC-CCcEEEEEEcCCC
Q 013695 79 KSILCYPVVETIHK----ENICHIVKAPA-AVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTN-NGQILLNEVAPRP 151 (438)
Q Consensus 79 G~~~~~~~~e~~~~----~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~-~G~~~ve~~~~~-~g~~~viEiNpR~ 151 (438)
|++..++..+++.. .|+. ..+.|+ .++++..+++++++.+++++||+ .|.+|+||++++ +|++||+|+|||+
T Consensus 243 g~~i~v~~ie~~dp~gvh~G~s-~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 243 DNVVIICSIENIDPMGVHTGDS-ITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred CCEEEEeeEEEEcCCccccCCE-EEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCC
Confidence 88777776776432 2433 334576 59999999999999999999999 599999999984 7889999999999
Q ss_pred CCCCCcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEecccccc
Q 013695 152 HNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEM 230 (438)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~ 230 (438)
+++..+...++|+++.+..++.++|.++.+.......... ..++| .++. +.++|.|.+..|.....
T Consensus 322 s~ss~l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~~----------a~~ep---~~d~~~~k~p~~~f~~f~~~~~ 388 (1102)
T PLN02735 322 SRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTP----------ASFEP---SIDYVVTKIPRFAFEKFPGSQP 388 (1102)
T ss_pred CCcchhhhhhhCCCHHHHHHHHHCCCChhhhccccccccc----------hheee---cCCcEEEEcccCCcccccCCCc
Confidence 9888888889999999999999999999876432111000 01110 1111 12455555444332111
Q ss_pred cCC---ceeEEEEEecCCHHHHHHHHHHHhh
Q 013695 231 RQQ---RKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 231 ~~g---~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
..| +++|+||++|+|++||+.||.+.++
T Consensus 389 ~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~ 419 (1102)
T PLN02735 389 ILTTQMKSVGEAMALGRTFQESFQKALRSLE 419 (1102)
T ss_pred ccceeeeecceEEEecCCHHHHHHHHHHHhc
Confidence 111 7899999999999999999998765
No 30
>PRK08462 biotin carboxylase; Validated
Probab=99.96 E-value=5.3e-27 Score=243.08 Aligned_cols=283 Identities=18% Similarity=0.219 Sum_probs=200.3
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.+.+++.++++++|||+||||..++ ||+|+++++|++||.+++.... ...+.+++|+||+|++|++++++++
T Consensus 140 ~~~~~~~~~~~~~~g~PvvvKP~~g~-gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~ 218 (445)
T PRK08462 140 LKSYEEAKKIAKEIGYPVILKAAAGG-GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGD 218 (445)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEEC
Confidence 56889999999999999999997655 8999999999999999886531 1234699999999878999999988
Q ss_pred cCCeEEEEeeee-eEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCYPVVE-TIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~e-~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++..++..+ .............|. .++++..+++++.+.+++++||+.|++++||+++++|++||+|||||++++
T Consensus 219 ~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 219 KHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVE 298 (445)
T ss_pred CCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcC
Confidence 888876654321 112222212223565 489999999999999999999999999999999987889999999999865
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC--CCCceEEEEeccccccCCCccchhhhHHHHHcCCC-cEEEecc--c--
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVHWYD--K-- 227 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg-~~~~~~~--~-- 227 (438)
..++..++|+|+++.+++.++|.++..... ...+++..++.+.... .+.+....+..+ ..|+ ..+++.. .
T Consensus 299 ~~~~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~G~l~~~-~~~~~~~~r~~~~~~~g 375 (445)
T PRK08462 299 HTVSEMVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAEDPK--KFYPSPGKITKW-IAPGGRNVRMDSHAYAG 375 (445)
T ss_pred cceehhhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCCCC--ceecccCEEeEE-EcCCCCCEEEccCcCCC
Confidence 555556789999999999999999875322 1223444444443211 011000011111 1121 1122111 0
Q ss_pred c--cccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 228 P--EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 228 ~--~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
. .....+++|+|++.|+|.++|+.++.++++.+ .+.|..++.+.+..+...=+...-.++.+
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~--------------~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (445)
T PRK08462 376 YVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEF--------------KVEGIKTTIPFHLEMMENADFINNKYDTK 439 (445)
T ss_pred CEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhc--------------EEECccCCHHHHHHHhcChhhcCCceech
Confidence 0 01113689999999999999999999999875 45667889999998887755544455444
No 31
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=1.3e-26 Score=237.69 Aligned_cols=254 Identities=14% Similarity=0.135 Sum_probs=177.7
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+|+.+++++++||+||||.. +++|+||++++|.+|+.++++.+.. ....++|||||+| .|+|+.+++|
T Consensus 129 ~~~~~ea~~~~~~~~~PvVVKp~~-~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~d 206 (426)
T PRK13789 129 FTEYSSSLSYLESEMLPIVIKADG-LAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISD 206 (426)
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCC-CCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEEC
Confidence 578899999999999999999975 4589999999999999999988642 1236999999998 9999999976
Q ss_pred cCCeEEEEeeeeeEEe--cCe------eeEEEcCCC-CCHHHHHHHHH-HHHHHHHHc---C--ceeEEEEEEEEeCCCc
Q 013695 77 RDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNGQ 141 (438)
Q Consensus 77 ~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~~l---g--~~G~~~ve~~~~~~g~ 141 (438)
+. .+..+|+.+.+.+ +++ .+.++.|++ +++++.+++++ ++++++++| | ++|++++||+++++|+
T Consensus 207 g~-~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~ 285 (426)
T PRK13789 207 GD-SYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGE 285 (426)
T ss_pred CC-EEEEccceEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCC
Confidence 43 6667777654332 121 245677887 68888888864 666766655 4 7899999999998888
Q ss_pred EEEEEEcCCCCCCCCcceee-ccCcHHHHHHHHHhCC-CCCCCCCCCCceEEEEeccccccCCCccchh-hhHHHHHcCC
Q 013695 142 ILLNEVAPRPHNSGHHTIES-CYTSQFEQHMRAVVGL-PLGDPSMKTPAAIMYNLLGEAEGERGFYLAH-QLIGKALSIP 218 (438)
Q Consensus 142 ~~viEiNpR~~~~~~~~~~~-~~~~~~~~~l~~~~G~-~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~-~~i~~~~~~p 218 (438)
+||+|+|+|+|++....+.. ...|+++.+++.+.|. +-.........++.+.+....++. .+..+. ..+++. ..+
T Consensus 286 ~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g~l~~~~~~~~~~~s~~vv~a~~gyp~-~~~~g~~i~~~~~-~~~ 363 (426)
T PRK13789 286 PKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTGKIKVVNLKLKQGAAAVVVLAAQGYPD-SYEKNIPLNLPET-SGQ 363 (426)
T ss_pred EEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcCCCCCCCceecCCceEEEEECcCCcCC-CcCCCCEEeccCc-CCC
Confidence 99999999999887765543 3689999999999984 322222222334433333333332 222100 011110 012
Q ss_pred CcEEEe------cccccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 219 GATVHW------YDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 219 g~~~~~------~~~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
++.+.. .++..+++||.++ |++.|+|+++|+++++++++.|++
T Consensus 364 ~~~if~a~~~~~~~~~~t~ggRvl~-v~~~g~~~~~A~~~ay~~~~~i~~ 412 (426)
T PRK13789 364 NVVLFHAGTKKKDGKVFSSGGRILG-IVAQGKDLKDSVDQAYSFLEKIQA 412 (426)
T ss_pred CcEEEEeeeeeeCCEEEeCCCeEEE-EEEecCCHHHHHHHHHHHHhcCCC
Confidence 332211 1333445556655 889999999999999999999875
No 32
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.95 E-value=1.7e-26 Score=239.59 Aligned_cols=277 Identities=17% Similarity=0.161 Sum_probs=195.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+|+.++++++|||+||||..++ +|+|+.+|+|.+|+.++++.+. ...+.+++||||+|.+|+++.++++
T Consensus 138 ~~~~~e~~~~~~~~~~P~VvKP~~g~-gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~ 216 (450)
T PRK06111 138 LEDAEEAIAIARQIGYPVMLKASAGG-GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLAD 216 (450)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCC-CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEc
Confidence 46889999999999999999997655 8999999999999999988642 1234699999999878999999988
Q ss_pred cCCeEEEEeee-eeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++..+... ......+.......|.+ +++++.+++++++.+++++||+.|++|+||+++++|++||+|||||++++
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 217 THGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVE 296 (450)
T ss_pred CCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCc
Confidence 77876554322 12222121112224554 78899999999999999999999999999999988789999999999987
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhH-HHHH--cCCCcEEEec---
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLI-GKAL--SIPGATVHWY--- 225 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i-~~~~--~~pg~~~~~~--- 225 (438)
.+++..++|+|+++.+++.++|.+++.... ....+++.++++..... ..+ ..+. ..+. ..++..+...
T Consensus 297 ~~~~~~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p--~~G~~~~i~~~~~~~~~~~~~~~~ 373 (450)
T PRK06111 297 HPVTEEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKT-FFP--SPGKITDLTLPGGEGVRHDHAVEN 373 (450)
T ss_pred chhhHHHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCCC-ccc--CCCeeCeEecCCCCCEEEEecccC
Confidence 777778899999999999999998864321 12234555666543110 000 0011 0110 1122222111
Q ss_pred cccc-ccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcC
Q 013695 226 DKPE-MRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 226 ~~~~-~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G 297 (438)
|... ....+++|+|++.|+|.++|++++.++.++++. -|..+..+...++.+.-+..-
T Consensus 374 G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~--------------~g~~~~~~~~~~~~~~~~~~~ 432 (450)
T PRK06111 374 GVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKV--------------EGIKTNIPLLLQVLEDPVFKA 432 (450)
T ss_pred CCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEE--------------eCccCCHHHHHHHhcChhhcC
Confidence 1100 011246799999999999999999999998752 235677888777776544433
No 33
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=4.8e-27 Score=232.06 Aligned_cols=282 Identities=19% Similarity=0.212 Sum_probs=213.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
..|.+++.+.++++|||+++|++.+| ||+||+++++++|+.+.++.+.. .+..+++|+||+..+++.++++.|
T Consensus 134 ~qs~e~~~~~a~eIgyPvMiKa~~GG-GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD 212 (670)
T KOG0238|consen 134 DQSDEEAKKVAREIGYPVMIKATAGG-GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGD 212 (670)
T ss_pred cccHHHHHHHHHhcCCcEEEEeccCC-CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEec
Confidence 56889999999999999999999887 89999999999999998876531 236799999999999999999999
Q ss_pred cCCeEE-EEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~-~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
..|+.+ ++...+.+++.++.....+|++ ++++++.+|-+.|.++++++||.|...+||++|+++++||+|+|.|+.=-
T Consensus 213 ~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVE 292 (670)
T KOG0238|consen 213 KHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVE 292 (670)
T ss_pred CCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeec
Confidence 999865 4555566666665544557887 99999999999999999999999999999999999999999999999844
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHHH---HcCCCcEEE--ecc
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKA---LSIPGATVH--WYD 226 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~~---~~~pg~~~~--~~~ 226 (438)
.+.+..-+|+|+.++++|.+.|.|++.... ..+.+..++++.+.... .+-|....+... ...|++.+. ...
T Consensus 293 HPvTEmItg~DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp~~-~f~P~~G~L~~~~~p~~~~~vRvdtgV~~ 371 (670)
T KOG0238|consen 293 HPVTEMITGTDLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYK-GFLPSAGRLVYYSFPGHSPGVRVDTGVRS 371 (670)
T ss_pred ccchhhccchHHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCCcc-cCCCCCccceeeccCCCCCCeeeecCccc
Confidence 445556679999999999999999986543 24556777777655322 111111111111 112333222 111
Q ss_pred cccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcE
Q 013695 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300 (438)
Q Consensus 227 ~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~ 300 (438)
..+.+. ...++.++++|.|+++|+.++..+++.. +++|.+.+.+.+..++..-...--++
T Consensus 372 g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~--------------~I~Gv~tnI~~l~~i~~~~~F~~g~V 433 (670)
T KOG0238|consen 372 GDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNY--------------VIRGVPTNIDFLRDIISHPEFAKGNV 433 (670)
T ss_pred CCcccccccchheeeeEecCCHHHHHHHHHHHHhhc--------------EEecCccchHHHHHHhcChhhhcCcc
Confidence 112211 2457999999999999999999998853 57788888888888876644433333
No 34
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.95 E-value=1.7e-26 Score=259.50 Aligned_cols=286 Identities=20% Similarity=0.253 Sum_probs=210.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.|.+|+.++++++|||+|+||+.++ ||+|+++|++++||.++++.+.. ..+.+++|+||+|.+|+++++++|
T Consensus 142 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D 220 (1146)
T PRK12999 142 IDDIEEALEFAEEIGYPIMLKASAGG-GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGD 220 (1146)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECCCC-CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEE
Confidence 67899999999999999999998765 89999999999999999886531 135699999999889999999999
Q ss_pred cCCeEEEE-eeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCY-PVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~-~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|++..+ ...+.+++.+.......|. .+++++++++++.+.++++++||.|++++||+++++|.+||+|+|||++.+
T Consensus 221 ~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 221 KHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred CCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCc
Confidence 88887654 3333444444444445676 499999999999999999999999999999999988789999999999866
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---------CCCceEEEEeccccccCCCccchhhhHHHHHcCCCc-EEEe
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW 224 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---------~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~-~~~~ 224 (438)
.+++...+|+|+++.+++.++|.++..... ..+.++.+++..+.... .+.|....+..+ ..|+. .+++
T Consensus 301 h~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~-~f~P~~G~i~~~-~~p~~~~vr~ 378 (1146)
T PRK12999 301 HTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPAN-NFMPDTGRITAY-RSPGGFGVRL 378 (1146)
T ss_pred chHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeecCcc-CccCCCcEEEEE-EcCCCCcEEe
Confidence 556677889999999999999999876321 12335555666543211 121111122111 22321 1222
Q ss_pred c------ccccccCC-ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcC
Q 013695 225 Y------DKPEMRQQ-RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 225 ~------~~~~~~~g-~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G 297 (438)
. |....... +.+++|++.|+|+++|..++.++++.+ -+.|..++.+.+..+...-....
T Consensus 379 d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~--------------~i~gv~tn~~~l~~~~~~~~f~~ 444 (1146)
T PRK12999 379 DGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREF--------------RIRGVKTNIPFLENVLKHPDFRA 444 (1146)
T ss_pred eccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhc--------------EEecccCcHHHHHHHhCCHhhcC
Confidence 1 11111122 456889999999999999999999876 34566788999888887766666
Q ss_pred CcEEEEEE
Q 013695 298 VPHEVRIV 305 (438)
Q Consensus 298 ~~~~~~v~ 305 (438)
-.++.+++
T Consensus 445 ~~~~t~~~ 452 (1146)
T PRK12999 445 GDYTTSFI 452 (1146)
T ss_pred CCccchhh
Confidence 56655544
No 35
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.95 E-value=2.5e-26 Score=233.06 Aligned_cols=277 Identities=22% Similarity=0.293 Sum_probs=206.3
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.+.+|+.+.++++|||+||||+.+| ||+||++|+|.+||.+++..+.+ .++.+++|+||++.+++.++++.|
T Consensus 138 ~~~~ee~~~~a~~iGyPVivKa~~Gg-Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD 216 (449)
T COG0439 138 VADNEEALAIAEEIGYPVIVKAAAGG-GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGD 216 (449)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEc
Confidence 56789999999999999999998866 99999999999999999987642 235599999999988999999999
Q ss_pred cCCeEEEEeee-eeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
+.|.++...-. +.+++.........|++ ++++.++++-+.+.++++.+||.|..++||+++.+|++||+|+|+|++.-
T Consensus 217 ~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqve 296 (449)
T COG0439 217 GHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVE 296 (449)
T ss_pred CcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccC
Confidence 98887655432 24455455455567887 78999999999999999999999999999999876889999999999977
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeccccccCCCccchhhhHHHHHcCC---CcE--EEecc
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP---GAT--VHWYD 226 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~p---g~~--~~~~~ 226 (438)
.+.+...+|+|+..++++.++|.+++.... . .+.++.+++..+.... .+.|. .+.-.....| ++. ...|.
T Consensus 297 h~vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~aedp~~-~f~ps-pG~i~~~~~P~g~gvr~d~~~~~ 374 (449)
T COG0439 297 HPVTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAEDPLG-NFLPS-PGKITRYAPPGGPGVRVDSGVYD 374 (449)
T ss_pred ccceehhhhhhHHHHHHHHHcCCCCCCCCCcccccceeeeceeeccCCCC-CcCCC-CCeeeeecCCCCCceEEEeeccc
Confidence 777777899999999999999988876542 2 2346666766544221 12211 1221212233 222 22222
Q ss_pred cccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc
Q 013695 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 227 ~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~ 296 (438)
.....+ ...+|++++.|.+.++|..++..++..+ .+.|-.+..+...++.+.....
T Consensus 375 ~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~--------------~i~G~~t~~~~~~~~~~~~~~~ 432 (449)
T COG0439 375 GYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDEL--------------VIDGIKTNIPLLQEILRDPDFL 432 (449)
T ss_pred CcccCcchhhheeEEEEecCChHHHHHHHHHHHHhe--------------EecCccCChHHHHHHhcChHhh
Confidence 211111 2678999999999999999999999865 3344445667777766655543
No 36
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.95 E-value=3.2e-26 Score=256.03 Aligned_cols=286 Identities=17% Similarity=0.240 Sum_probs=214.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.+.+++.++++++|||+||||+.+| ||+|+++|++++||.++++.+.. ..+.++||+||++.+|+++++++|
T Consensus 138 v~~~eea~~~ae~iGyPvIVKP~~GG-GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD 216 (1143)
T TIGR01235 138 PETMEEVLDFAAAIGYPVIIKASWGG-GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGD 216 (1143)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC-CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEe
Confidence 57889999999999999999998766 89999999999999999876531 235699999999889999999999
Q ss_pred cCCeEEE-EeeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|+++. +...+..++.+.......|+ .++++++++|++.+.++++++||.|++++||+++++|++||+|+|||++.+
T Consensus 217 ~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 217 KHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred CCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 8888654 43333334434434445676 499999999999999999999999999999999988899999999999977
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCC------C---CCCCceEEEEeccccccCCCccchhhhHHHHHcCC-CcEEEe
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDP------S---MKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP-GATVHW 224 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~------~---~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~p-g~~~~~ 224 (438)
.+++...+|+|+.+.+++.+.|.+++.+ . ...+.++-+++..+.. ...|.|....+..+ ..| |..+++
T Consensus 297 h~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp-~~~f~p~~g~i~~~-~~~~g~gvr~ 374 (1143)
T TIGR01235 297 HTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDP-ANNFQPDTGRIEAY-RSAGGFGIRL 374 (1143)
T ss_pred hhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecC-CCCcccCCcEeeEE-ecCCCCCeEe
Confidence 7777778899999999999999999821 1 1134567777776442 22232222222222 122 111222
Q ss_pred -----cccccccC-C-ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcC
Q 013695 225 -----YDKPEMRQ-Q-RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 225 -----~~~~~~~~-g-~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G 297 (438)
|......+ . .-++.+++.|+|+++|..++.+++.++ .+.|-.++.+.+..+...-....
T Consensus 375 d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~--------------~i~gv~tn~~~l~~~l~~~~f~~ 440 (1143)
T TIGR01235 375 DGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREF--------------RIRGVKTNIPFLENVLGHPKFLD 440 (1143)
T ss_pred cccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhc--------------EEECccCCHHHHHHHhcCHhhcC
Confidence 11112221 1 345899999999999999999999865 45667889999999988877766
Q ss_pred CcEEEEEE
Q 013695 298 VPHEVRIV 305 (438)
Q Consensus 298 ~~~~~~v~ 305 (438)
-.++.+++
T Consensus 441 ~~~~t~~~ 448 (1143)
T TIGR01235 441 GSYDTRFI 448 (1143)
T ss_pred CCccchhh
Confidence 66665554
No 37
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.95 E-value=2.1e-25 Score=251.90 Aligned_cols=346 Identities=19% Similarity=0.222 Sum_probs=231.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
++|.+|+.++++++|||+||||..++ +|+|+++|+|.+|+.++++.+.. ....++|||||++++|+++++++|
T Consensus 136 v~s~dea~~~a~~igyPvVVKP~~gg-GG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~D 214 (1201)
T TIGR02712 136 LSSLDEALEAAKEIGYPVMLKSTAGG-GGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGD 214 (1201)
T ss_pred cCCHHHHHHHHHhcCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEEC
Confidence 57899999999999999999998765 89999999999999998877531 234599999999779999999999
Q ss_pred cCCeEEEEeeee-eEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013695 77 RDKSILCYPVVE-TIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~e-~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
++|++..++..+ ..++.+.......|++ ++++..+++++.+.+++++++|+|++++||++++ +|.+||+|+|||+++
T Consensus 215 g~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 215 GKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQV 294 (1201)
T ss_pred CCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCc
Confidence 888877665433 2333333233345664 8999999999999999999999999999999985 478999999999987
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC-----CCCceEEEEeccccccCCCccchhhhHHHHHcCCCc-EEEe---
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM-----KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGA-TVHW--- 224 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~-----~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~-~~~~--- 224 (438)
...++...+|+|+++.+++.++|.+++.... ....++..+++++.... .+.+....++. ...|+. .+..
T Consensus 295 ~~~lte~~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~-~~~p~~G~l~~-v~~p~~vrvd~~v~ 372 (1201)
T TIGR02712 295 EHPVTEMVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAK-NFQPSPGLLTD-VQFPDDVRVDTWVE 372 (1201)
T ss_pred chhhHHHHhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCccc-CcCCCCceeeE-EECCCeEEEeceec
Confidence 6666777889999999999999998764321 11234444555533211 11110001111 123332 1111
Q ss_pred cccc-cccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013695 225 YDKP-EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 225 ~~~~-~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
.|.. .....+++|+|++.|+|+++|+++++++++++. +.|..++++.+..+...-....-.+.
T Consensus 373 ~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~--------------i~G~~tn~~~l~~~~~~~~~~~~~~~-- 436 (1201)
T TIGR02712 373 TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETR--------------VYGIETNLDYLRSILSSETFRSAQVS-- 436 (1201)
T ss_pred CCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceE--------------EcCcCcCHHHHHHHhcChhhcCCCcc--
Confidence 0110 011237899999999999999999999998764 34567889988888766443222322
Q ss_pred EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHH--HhhcCCCCCceE
Q 013695 304 IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLL--SIVQMPRGVPVA 380 (438)
Q Consensus 304 v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~--s~~~~~~gip~~ 380 (438)
-+||.++.-..--+.|.-+|.-..+-|. =|+.-..=+|||+++. +|-..--| +-+.-|.+-++.
T Consensus 437 -----------t~~l~~~~~~~~~i~v~~~G~~ttvQD~-pGR~g~~~~Gvp~sG~-mD~~a~~~aN~lvgN~~~~a~l 502 (1201)
T TIGR02712 437 -----------TRTLNSFVYTPPAIEVLSPGAQTTVQDY-PGRTGYWDVGVPPSGP-MDSYSFRLANRIVGNDEGAAGL 502 (1201)
T ss_pred -----------chhhhhCCCCCCeEEEeccCCCccccCc-CCCCccccCCCCCcch-hhHHHHHHHHHHhCCCCCCcEE
Confidence 2344443322222444444544333332 2456667889999753 33222111 223346666655
No 38
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.95 E-value=2.4e-26 Score=230.70 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=208.3
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.+.+++.++++++|||++||++.+| |||||+++++++|+.++++.+.. .+++++||+|++-.+++.++++.|
T Consensus 138 ~qd~~~~~~~A~eiGyPVlIKAsaGG-GGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD 216 (645)
T COG4770 138 IQDAAELVAIAEEIGYPVLIKASAGG-GGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFAD 216 (645)
T ss_pred ccCHHHHHHHHHhcCCcEEEEeccCC-CCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEec
Confidence 57889999999999999999998877 89999999999999999987631 247899999999889999999999
Q ss_pred cCCeEEEE-eeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSILCY-PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~-~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|+++.. ...|.+++.++....-.|++ ++++++++|-+.+.+++++.||.|...|||+++.++.+||+|+|.|+.=-
T Consensus 217 ~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVE 296 (645)
T COG4770 217 QHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVE 296 (645)
T ss_pred CCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceecc
Confidence 99997654 45556666666555567888 99999999999999999999999999999999999999999999999843
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC--C-CCceEEEEeccccccCCCccchhhhHHHHHc--CCCcEEE---ecc
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM--K-TPAAIMYNLLGEAEGERGFYLAHQLIGKALS--IPGATVH---WYD 226 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~--~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~--~pg~~~~---~~~ 226 (438)
.+.|...+|+|+.++++|.+.|.+|+.... . .++++..+++++.... .|-|....+..+.. -|++.+. ..|
T Consensus 297 HPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r-~FLPs~G~l~~~~~P~~~~vRvDsGV~~G 375 (645)
T COG4770 297 HPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPAR-GFLPSTGRLTRYRPPAGPGVRVDSGVREG 375 (645)
T ss_pred ccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCccc-CccCCCceeEeecCCCCCceecccCcccC
Confidence 445666789999999999999999876543 2 3567777888765432 12111111111100 0122111 011
Q ss_pred cccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcC
Q 013695 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFS 297 (438)
Q Consensus 227 ~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G 297 (438)
. +.++ ...+...++.|.|+++|++++.+++..+. |-|...+.+++..+...-...+
T Consensus 376 ~-~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~--------------v~Gi~tn~~Fl~al~~~~~F~~ 433 (645)
T COG4770 376 D-EISPFYDPMIAKLIVHGADREEALDRLRRALAEFE--------------VEGIATNIPFLRALMADPRFRG 433 (645)
T ss_pred C-ccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhE--------------ecCccccHHHHHHHhcCccccc
Confidence 1 1111 13457789999999999999999998653 4445566676666665544433
No 39
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=2.1e-25 Score=229.42 Aligned_cols=253 Identities=15% Similarity=0.083 Sum_probs=173.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCC----HHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKS----EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~----~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
+.+.+|+.+++.+++||+||||+. +++|+||++|++ .+++..+.....+..+.+||||||+| .|+|++++.|++
T Consensus 127 ~~~~~e~~~~~~~~~~PvVVKP~~-~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~Svd~~~dg~ 204 (435)
T PRK06395 127 CFSEKDAARDYITSMKDVAVKPIG-LTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFSLQAFSDGK 204 (435)
T ss_pred eCChHHHHHHHHhhCCCEEEEeCC-CCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEEEEEEEcCC
Confidence 346788888888889999999975 459999999954 34433333333333356999999998 899999998654
Q ss_pred CeEEEEeeeeeEEec--Ce------eeEEEc-----CCCCCHHHHHHHHHHHHHHHHHcC-----ceeEEEEEEEEeCCC
Q 013695 79 KSILCYPVVETIHKE--NI------CHIVKA-----PAAVPWKISELATDVAHKAVSSLE-----GAGIFAVELFWTNNG 140 (438)
Q Consensus 79 G~~~~~~~~e~~~~~--g~------~~~~~~-----P~~l~~~~~~~i~~~a~~i~~~lg-----~~G~~~ve~~~~~~g 140 (438)
.++..++.+++.+. |+ .+++++ +..++++..+++++++.+++++|+ ++|++++||+++++|
T Consensus 205 -~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g 283 (435)
T PRK06395 205 -HLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG 283 (435)
T ss_pred -eEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC
Confidence 67777777665432 11 122333 223899999999999999999998 789999999998666
Q ss_pred cEEEEEEcCCCCCCCCcceee-ccCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeccccccCCCccchhhhHHHHHcCC
Q 013695 141 QILLNEVAPRPHNSGHHTIES-CYTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIP 218 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~~-~~~~~~~~~l~~~~G~~l~~-~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~p 218 (438)
+||+|+|+|+|+++...+.. ...|+++..++.+.| ++.. .......++.+.+.+..+|. .+.++..........+
T Consensus 284 -p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~~~~~~~~~~~~~~l~~~gYp~-~~~~g~i~~~~~~~~~ 360 (435)
T PRK06395 284 -VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNGSIKFERKATVLKYIVPPGYGE-NPSPGRIKIDKTIFDS 360 (435)
T ss_pred -cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCCCceecCCCEEEEEEecCCCCC-CCCCCceeccccccCC
Confidence 99999999999998766554 367777777777777 5543 22122234444444544432 1211100011111124
Q ss_pred CcEEEeccc-----ccccCCceeEEEEEecCCHHHHHHHHHHHhhhcc
Q 013695 219 GATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 219 g~~~~~~~~-----~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
++.+...+. ...+.|+|+|+|++.|+|+++|+.+++++++.|+
T Consensus 361 ~~~~~~~~~~~~~~~~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~ 408 (435)
T PRK06395 361 NSDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPEASEKVDSDLNAVH 408 (435)
T ss_pred CCEEEEeeccccCCCeEECCCcEEEEEEEcCCHHHHHHHHHHHHhccC
Confidence 544422221 1335678999999999999999999999999886
No 40
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=2.6e-25 Score=228.76 Aligned_cols=251 Identities=17% Similarity=0.134 Sum_probs=171.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||.. +++|+||++|+|++|+.++++.+.. ..+.+||||||+| .|+|+++++
T Consensus 122 ~~~~~~~~~~~~~~~~~P~VvKP~~-~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~ 199 (420)
T PRK00885 122 TFTDAEEALAYLDEKGAPIVVKADG-LAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFV 199 (420)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEeCC-CCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEE
Confidence 3578899999999999999999975 4589999999999999999988642 2356999999998 999999998
Q ss_pred ecCCeEEEEeeeeeEEec--C------eeeEEEcCCC-CCHHHHHHHHH-HHHHHHHHc---C--ceeEEEEEEEEeCCC
Q 013695 76 GRDKSILCYPVVETIHKE--N------ICHIVKAPAA-VPWKISELATD-VAHKAVSSL---E--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~~--g------~~~~~~~P~~-l~~~~~~~i~~-~a~~i~~~l---g--~~G~~~ve~~~~~~g 140 (438)
+++ .+..++..++..+. + ..+.++.|.+ ++++..+++.+ ++.+++++| + ++|++|+||+++++|
T Consensus 200 ~g~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g 278 (420)
T PRK00885 200 DGE-NVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG 278 (420)
T ss_pred CCC-ceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC
Confidence 643 66667766543321 1 1123456776 88888877765 666666653 3 679999999999766
Q ss_pred cEEEEEEcCCCCCCCCcceee-ccCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeccccccCC-----CccchhhhHHH
Q 013695 141 QILLNEVAPRPHNSGHHTIES-CYTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGER-----GFYLAHQLIGK 213 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~~-~~~~~~~~~l~~~~G~~l~~-~~~~~~~~~~~~il~~~~~~~-----~~~~~~~~i~~ 213 (438)
+||+|+|||+|+++++.+.. .+.|+++.+++.+.|..... .......++.+.+.+..++.. .+. ++++
T Consensus 279 -~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~gy~~~~~~~~~i~----~~~~ 353 (420)
T PRK00885 279 -PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVIT----GLEA 353 (420)
T ss_pred -cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCCCceECCCcEEEEEEeCCCCCCCCCCCCEee----cccc
Confidence 89999999999888766654 36688887787777754321 111122333222222222210 111 2221
Q ss_pred HH----cCCCcEEEecccccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 214 AL----SIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 214 ~~----~~pg~~~~~~~~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
.. ..+++. ...++ -...+.|+|+|++.|+|++||+.+++++++.|+.
T Consensus 354 ~~~~~~~~~~~~-~~~~~-~~~~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~ 404 (420)
T PRK00885 354 ADADKVFHAGTK-LEDGK-LVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDF 404 (420)
T ss_pred cCCCEEEECcee-ccCCe-EEEeCCEEEEEEEecCCHHHHHHHHHHHHhccCC
Confidence 10 001111 01111 1234588999999999999999999999998864
No 41
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.94 E-value=1.7e-24 Score=222.22 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=174.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||.. +++|+||++++|.+|+.+++..+. .....+||||||+| .|+|+++++
T Consensus 122 ~~~~~~e~~~~~~~~g~PvVVKp~~-~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~ 199 (434)
T PLN02257 122 TFTDPAAAKKYIKEQGAPIVVKADG-LAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALV 199 (434)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEcCC-CCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEE
Confidence 3578899999999999999999974 569999999999999999988752 12356999999998 799999987
Q ss_pred ecCCeEEEEeeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHH-HHHHHHHHH---H--cCceeEEEEEEEEe-CC
Q 013695 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVS---S--LEGAGIFAVELFWT-NN 139 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~---~--lg~~G~~~ve~~~~-~~ 139 (438)
|++ .++..+..+.+.+ ++ ..+..+.|.+ +++++.+++ +++++++++ + +.|+|++++||+++ ++
T Consensus 200 dG~-~~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~ 278 (434)
T PLN02257 200 DGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKS 278 (434)
T ss_pred CCC-cEEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCC
Confidence 643 3443333321110 11 1233455655 888888875 556665544 3 35679999999998 67
Q ss_pred CcEEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCC-CCCCCCCceEEEEeccccccCCCccch--hhhHHHHH
Q 013695 140 GQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLG-DPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKAL 215 (438)
Q Consensus 140 g~~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~-~~~~~~~~~~~~~il~~~~~~~~~~~~--~~~i~~~~ 215 (438)
|.+||+|+|+|+|++++..++ .++.|+++.+++.+.|.-.. +.......++.+.+.+..+|. .++++ +.++++..
T Consensus 279 g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~~~~~~~~~~av~vv~a~~gYp~-~~~~g~~i~~~~~~~ 357 (434)
T PLN02257 279 GLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSGVSLTWSPDSAMVVVMASNGYPG-SYKKGTVIKNLDEAE 357 (434)
T ss_pred CCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCCCCceECCCceEEEEEcCCCCCC-CCCCCCEeeCCcccc
Confidence 889999999999998887666 47899999999998884211 122222334443333333332 12111 12443322
Q ss_pred c-CCCcEEEecccc------cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 216 S-IPGATVHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 216 ~-~pg~~~~~~~~~------~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
. .+++.+..-+.. -...|.|+..|++.|+|+++|++++++.++.|++
T Consensus 358 ~~~~~~~v~~a~~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~ 411 (434)
T PLN02257 358 AVAPGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDW 411 (434)
T ss_pred ccCCCCEEEECCceEccCCEEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 1 255443221111 1233567778999999999999999999999875
No 42
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.94 E-value=6.4e-25 Score=226.41 Aligned_cols=286 Identities=20% Similarity=0.243 Sum_probs=218.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.+.+|+.+++++.|||+++|.+.+| |||||+++++++|+.++++++.+ +.+.+.||+||+..+++.|+++.|
T Consensus 144 ~~~~ee~~~fa~~~gyPvmiKA~~GG-GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD 222 (1149)
T COG1038 144 IETIEEALEFAEEYGYPVMIKAAAGG-GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGD 222 (1149)
T ss_pred cccHHHHHHHHHhcCCcEEEEEccCC-CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeec
Confidence 56799999999999999999999877 89999999999999999987641 246799999999999999999999
Q ss_pred cCCeEE-EEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 77 RDKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~-~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
..|+++ .|...+.+++.++.....+|+. |+++++++|++.+.++++.++|.|...+||.++.+|++||||+|||..=-
T Consensus 223 ~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 223 THGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred CCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeE
Confidence 999864 5677777777777777788988 99999999999999999999999999999999999999999999999733
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---------CCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEec
Q 013695 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWY 225 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---------~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~ 225 (438)
...+..-+|+|....+++.+-|..+..+.. ..+.++.|++..+... -.|-|....+...+.-.|.-+++-
T Consensus 303 HTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~-n~F~PDtGrI~aYRs~gGfGVRLD 381 (1149)
T COG1038 303 HTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPE-NGFIPDTGRITAYRSAGGFGVRLD 381 (1149)
T ss_pred EeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcc-cCCCCCCceEEEEecCCCceEEec
Confidence 334556789999999999999988873221 1345677777754422 222222222322222233344543
Q ss_pred ccc-----cccC-C-ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCC
Q 013695 226 DKP-----EMRQ-Q-RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV 298 (438)
Q Consensus 226 ~~~-----~~~~-g-~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~ 298 (438)
+.. ...+ . .-+=.+.++|.++++|.+|+.+++.++. +.|-..+.++++.+...-+...-
T Consensus 382 ~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~Efr--------------IrGVkTNi~FL~~vl~h~~F~~g 447 (1149)
T COG1038 382 GGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFR--------------IRGVKTNIPFLEAVLNHPDFRSG 447 (1149)
T ss_pred CCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhe--------------ecceecCcHHHHHHhcCcccccC
Confidence 221 1111 1 2345688999999999999999998763 34446788888888877666555
Q ss_pred cEEEEE
Q 013695 299 PHEVRI 304 (438)
Q Consensus 299 ~~~~~v 304 (438)
.|..+.
T Consensus 448 ~y~T~F 453 (1149)
T COG1038 448 RYTTSF 453 (1149)
T ss_pred cceeee
Confidence 565554
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=3.2e-24 Score=217.49 Aligned_cols=249 Identities=12% Similarity=0.082 Sum_probs=172.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+++.+++.++++++|||+||||..+ ++|+||++|+|.+|+.++++.+. ...+.+||||||+| .|+|+.++.+++ .
T Consensus 88 ~~~~~ea~~~~~~~g~PvVvKp~~~-~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~ 164 (379)
T PRK13790 88 VERKKDALTYIENCELPVVVKKDGL-AAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNGD-L 164 (379)
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCC-CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeCC-E
Confidence 5688999999999999999999754 58999999999999999998875 22356999999998 999999998644 2
Q ss_pred EEEE-eeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHH-HHHHHHHHHHc-----CceeEEEEEEEEeCCCcEEE
Q 013695 81 ILCY-PVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNGQILL 144 (438)
Q Consensus 81 ~~~~-~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~~v 144 (438)
...+ ++.+...+ ++ ..+..+.|.+ +++++.+++ ++++.+++++| ++.|++|+||+++++| +||
T Consensus 165 ~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~v 243 (379)
T PRK13790 165 AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PKV 243 (379)
T ss_pred EEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEE
Confidence 3322 33221111 11 1123445654 788777666 77888888877 4579999999998766 999
Q ss_pred EEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccch--hhhHHHHHcCCCcE
Q 013695 145 NEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKALSIPGAT 221 (438)
Q Consensus 145 iEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~--~~~i~~~~~~pg~~ 221 (438)
+|+|+|+|++....+. .+++|+++.+++.+.|.++.... ....++.+.+.+..++. .+.++ +.++. .++ .
T Consensus 244 iEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~-~~~~~~~v~~~s~gyp~-~~~~~~~i~~~~----~~~-~ 316 (379)
T PRK13790 244 IEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKW-KNESIVGVMLASKGYPD-AYEKGHKVSGFD----LNE-N 316 (379)
T ss_pred EEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeE-cCCCEEEEEEccCCCCC-CCCCCCeeeecC----CCC-e
Confidence 9999999988775544 45899999999999997654222 22334444444333332 11100 00111 111 1
Q ss_pred EEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 222 VHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 222 ~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+..-+.. -...|.|++.|++.|+|++||++++++.++.|++
T Consensus 317 ~~~~~~~~~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~ 362 (379)
T PRK13790 317 YFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQS 362 (379)
T ss_pred EEECCccccCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 1111100 1123467788999999999999999999999875
No 44
>PRK07206 hypothetical protein; Provisional
Probab=99.93 E-value=2.5e-24 Score=221.19 Aligned_cols=248 Identities=16% Similarity=0.139 Sum_probs=176.6
Q ss_pred ccCHHHHHHHHHhhCC---cEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCceeEEEE
Q 013695 3 VNDLESAWRAGKQFGY---PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVI 72 (438)
Q Consensus 3 v~s~ee~~~~~~~igy---PvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~-------~~~~lvEe~I~g~~E~sv~ 72 (438)
+.+.+|+.++++++|| |+||||.. |+||+|+++|+|.+|+.++++++... .+.++|||||+| .|++++
T Consensus 129 ~~~~~e~~~~~~~~g~~~~P~VvKP~~-g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~ 206 (416)
T PRK07206 129 TADWEEAEAWLRENGLIDRPVVIKPLE-SAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVN 206 (416)
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEeCCC-CCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEE
Confidence 5688999999999998 99999975 45899999999999999999876421 256999999998 999999
Q ss_pred EEEecCCeEEEEeeeeeEEe---cCeeeEEE-cCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeCCCcEEEEEE
Q 013695 73 VVRGRDKSILCYPVVETIHK---ENICHIVK-APAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (438)
Q Consensus 73 ~~~~~~G~~~~~~~~e~~~~---~g~~~~~~-~P~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEi 147 (438)
++. .+|++....+...... .+...... ...+.+++..+++.+.+.+++++||+. |++|+||+++++| +|++||
T Consensus 207 ~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEi 284 (416)
T PRK07206 207 FVS-LDGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEI 284 (416)
T ss_pred EEE-ECCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEE
Confidence 985 5778765544322111 11111111 112245678889999999999999995 9999999998776 799999
Q ss_pred cCCCCCCCCc--ceeeccCcHHHHHHHHHhCCCCCCCC----CC-CCceEEEEeccccccC-CCccchhhhHHHHHcCCC
Q 013695 148 APRPHNSGHH--TIESCYTSQFEQHMRAVVGLPLGDPS----MK-TPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPG 219 (438)
Q Consensus 148 NpR~~~~~~~--~~~~~~~~~~~~~l~~~~G~~l~~~~----~~-~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~~pg 219 (438)
|||++++... ...++|+|+++.+++.++|.+..... .. ......+.+.....+. ..++ +++++...|+
T Consensus 285 n~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 360 (416)
T PRK07206 285 GARLDGGLHPDVARLATGDSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLISPAAGVFSNVE----FLEEIQKLPS 360 (416)
T ss_pred CCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEecCCCceEeCCc----cHHHHHhCCc
Confidence 9999977654 34577999999999999997653211 11 1122222333322222 2344 6777777787
Q ss_pred cE-EEecccc------cccCCceeEEEEEecCCHHHHHHHHHHHhh
Q 013695 220 AT-VHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 220 ~~-~~~~~~~------~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
+. +.++.+. ..+..+++|+|+..++|.+++.+..+.+..
T Consensus 361 v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~ 406 (416)
T PRK07206 361 FKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIRK 406 (416)
T ss_pred hhheEEecCCCCCccCceecCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 63 3332211 123347899999999999999998887665
No 45
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.93 E-value=4.7e-24 Score=237.39 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=183.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC-CCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-FDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~-~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
+++.+|+.+++++++||+||||..+ ++|+||++|+|.+|+.++++.+.. ..+.++|||||+| .||+++++.+ +|++
T Consensus 128 v~~~~e~~~~~~~~~~PvVVKP~~g-~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G-~E~sVe~i~~-~g~~ 204 (887)
T PRK02186 128 LALRAVALDALDGLTYPVVVKPRMG-SGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEG-DEYSVETLTV-ARGH 204 (887)
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCCC-CCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccC-CcEEEEEEEE-CCcE
Confidence 5788999999999999999999764 599999999999999999887643 2356999999998 9999999875 4456
Q ss_pred EEEeeeeeEEecC---eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 82 LCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 82 ~~~~~~e~~~~~g---~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
.+..+.+...... .......|.+++++..+++.+++.+++++||+. |++|+||+++++ .+||+|||||++++...
T Consensus 205 ~i~~i~~k~~~~~~~~ve~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~-g~~liEIn~R~~G~~i~ 283 (887)
T PRK02186 205 QVLGITRKHLGPPPHFVEIGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGD-TVVIIEINPRLAGGMIP 283 (887)
T ss_pred EEEEEEeeecCCCCCeEEeccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECC-CEEEEEECCCCCCccHH
Confidence 5665554322111 112235688899999999999999999999996 999999999865 49999999999865533
Q ss_pred --ceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccC-CCccchhhhHH-HHHcCCCcEEEecccc-----
Q 013695 158 --TIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIG-KALSIPGATVHWYDKP----- 228 (438)
Q Consensus 158 --~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~-~~~~~~~~~i~-~~~~~pg~~~~~~~~~----- 228 (438)
...++|+|+++.+++.++|.++.........+....+++...+. ..+. ..+ .....|++.++++.++
T Consensus 284 ~li~~a~Gvd~~~~~i~~~lG~~~~~~~~~~~~~ai~~~~~~~~G~i~~i~----~~~~~~~~~~~~~~~~~~~~G~~v~ 359 (887)
T PRK02186 284 VLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRGLL----FLPDDIAARPELRFHPLKQPGDALR 359 (887)
T ss_pred HHHHHHHCcCHHHHHHHHhCCCCCCCCCCCCCeEEEEEEecCCCceEEecc----cchhhcccCCeEEEEEecCCCCEec
Confidence 34467999999999999999876543322333333344333221 1111 111 1223444443332111
Q ss_pred -cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 229 -EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 229 -~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
..+..+++|+|++.|+|.+++..++.++.+.+..
T Consensus 360 ~~~~~~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~ 394 (887)
T PRK02186 360 LEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSI 394 (887)
T ss_pred CCCCCCCccEEEEEEcCCHHHHHHHHHHHHhcCEE
Confidence 1223479999999999999999999999987653
No 46
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.93 E-value=9.2e-24 Score=217.52 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=169.7
Q ss_pred cccCHHHHHHHHHhhCCc-EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~-----~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++||| +|+||.. +++|+|+++++|.+|+.++++.+... ...++|||||+| .|+++.++.
T Consensus 124 ~~~~~~~~~~~~~~~g~P~~VvKp~~-~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 201 (423)
T TIGR00877 124 VFTDPEEALSYIQEKGAPAIVVKADG-LAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFV 201 (423)
T ss_pred EECCHHHHHHHHHhcCCCeEEEEECC-CCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEE
Confidence 357899999999999999 9999965 45899999999999999988876422 246999999998 899999998
Q ss_pred ecCCeEEEEeeeeeEEec--Ce------eeEEEcCCC-CCHHHHHHH-HHHHHHHHHHc---C--ceeEEEEEEEEeCCC
Q 013695 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELA-TDVAHKAVSSL---E--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i-~~~a~~i~~~l---g--~~G~~~ve~~~~~~g 140 (438)
|+ +.+..+++.+.+.+. ++ ...++.|.+ ++++...++ .+++.++.++| + ++|++|+||+++++|
T Consensus 202 dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g 280 (423)
T TIGR00877 202 DG-KTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG 280 (423)
T ss_pred cC-CeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC
Confidence 64 366667766544321 10 123355654 677666553 44555555555 3 689999999999877
Q ss_pred cEEEEEEcCCCCCCCCcceeec-cCcHHHHHHHHHhCCCCCCCCC--CCCceEEEEeccccccC-CCccchhhhHHHHHc
Q 013695 141 QILLNEVAPRPHNSGHHTIESC-YTSQFEQHMRAVVGLPLGDPSM--KTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALS 216 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~~~-~~~~~~~~l~~~~G~~l~~~~~--~~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~ 216 (438)
+|++|+|||+|+++++.+... ++|+++.+++.+.|. ++.+.. ....++.+.+.+..++. ........+. +...
T Consensus 281 -~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~-l~~~~~~~~~~~a~~~~~~~~~yp~~~~~~~~i~~~-~~~~ 357 (423)
T TIGR00877 281 -PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGK-LDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGE-PLIE 357 (423)
T ss_pred -cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEecCCcCCCCCCCCEeeCC-cccc
Confidence 999999999998888765543 678888787777764 322211 22223322232222221 0000000011 1112
Q ss_pred CCCcEEEeccc-----ccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 217 IPGATVHWYDK-----PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 217 ~pg~~~~~~~~-----~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
.+++.+...+. .-.+.++++|+|++.|+|.++|+.+++.+.++|+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~ 408 (423)
T TIGR00877 358 AEGVKVFHAGTKQDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKF 408 (423)
T ss_pred cCCCEEEECceeccCCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 24443321111 01244689999999999999999999999998874
No 47
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.93 E-value=1.9e-24 Score=212.45 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=183.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC--CCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF--DRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~--~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+++.+++.++++++||||||||++. .||.|..+++|++||.+..+..... ..++++||++.|++|+..++++|.+++
T Consensus 136 ~~~~~e~~~~~~~ig~PvIVrP~~~-lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 136 AHSVEEADEIADEIGYPVIVKPSFG-LGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred cccHHHHhhhHhhcCCCEEEecCcC-CCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCC
Confidence 5688999999999999999999874 4899999999999999988876532 367999999999999999999999988
Q ss_pred EEEEeeeeeEEecCee---eEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC-CcEEEEEEcCCCCCCC
Q 013695 81 ILCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHNSG 155 (438)
Q Consensus 81 ~~~~~~~e~~~~~g~~---~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~~~ 155 (438)
+......++....|.. .....|+. +++...+.++..+.++++.||..|.+|+||.++++ |++||+|+|||++++.
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcch
Confidence 8777667776544321 23456777 78888888888999999999999999999999876 5899999999999999
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEeccccccc---
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMR--- 231 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~~--- 231 (438)
.+..++++...-......+.|..+++........ . . ..++| +++- +.+.|.|.+..|......
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~-t---~------a~feP---sldyvv~k~pr~~f~kf~~~~~~l~~ 361 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGR-T---P------ASFEP---SLDYVVTKIPRFDFEKFPGADRRLGT 361 (400)
T ss_pred hhhhhccCChHHHHHHHhhcccCchhhcCccccc-c---c------cccCC---ccceeeeecCCCCcccccccccceee
Confidence 9999998966666666677787777655321110 0 0 01110 1111 134566654443311111
Q ss_pred CCceeEEEEEecCCHHHHHHHHHHHhh
Q 013695 232 QQRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 232 ~g~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
.-+++|+||++|++++||+.||.+.++
T Consensus 362 ~mks~gevm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 362 QMKSVGEVMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred eeeccceEEEecchHHHHHHHHHHhhc
Confidence 116889999999999999999998776
No 48
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.93 E-value=7.7e-24 Score=208.56 Aligned_cols=253 Identities=18% Similarity=0.147 Sum_probs=184.6
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+++.+++++.|.|+||||..+. +|+||.++.+.+|..++..++... ..+++||||++| .|+|+.+++|
T Consensus 124 f~~~e~a~ayi~~~g~piVVKadGLa-aGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~D 201 (428)
T COG0151 124 FTDPEEAKAYIDEKGAPIVVKADGLA-AGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVD 201 (428)
T ss_pred cCCHHHHHHHHHHcCCCEEEeccccc-CCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEEc
Confidence 56899999999999999999997665 899999999999999988765421 256999999998 9999999998
Q ss_pred cCCeEEEEeeeeeEEec--Ce------eeEEEcCCC-CCHHHHHHHH-HHHHHHHHHc-----CceeEEEEEEEEeCCCc
Q 013695 77 RDKSILCYPVVETIHKE--NI------CHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 77 ~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~~g~ 141 (438)
++ ++..+|+.+++.+. |+ .+++++|.+ +++++.+++. ++.+..+++| .|+|++..+|+++++|
T Consensus 202 G~-~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G- 279 (428)
T COG0151 202 GK-TVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG- 279 (428)
T ss_pred CC-eEEECccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-
Confidence 76 78888888776542 22 366788888 7888777776 8888888877 5789999999999988
Q ss_pred EEEEEEcCCCCCCCCcceeeccCcHHHHHHHHHhCCCCCCCCCC--C-CceEEEEeccccccCCCccch--hhhHHHHHc
Q 013695 142 ILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK--T-PAAIMYNLLGEAEGERGFYLA--HQLIGKALS 216 (438)
Q Consensus 142 ~~viEiNpR~~~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~--~-~~~~~~~il~~~~~~~~~~~~--~~~i~~~~~ 216 (438)
++|||+|.|+|+++.+.++..--|.+.+.+.++....|...... . ..++.+.+.+..+|.. +.++ +.+.++...
T Consensus 280 PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~-~~kG~~I~~~~~~~~ 358 (428)
T COG0151 280 PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGD-PEKGDVITGDEEAEE 358 (428)
T ss_pred cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCCccccchhhccCCceEEEEEecCCCCCC-CCCCCEEecChhhcc
Confidence 99999999999999988877655555555656666666553321 1 2344444444444421 2111 112222222
Q ss_pred CCCcEEEeccc-------ccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 217 IPGATVHWYDK-------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 217 ~pg~~~~~~~~-------~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
. +..+..-+. ..+++||.+ .|+++|+|.++|+++++..++.+++
T Consensus 359 ~-~~~vf~Agv~~~~~~~lvt~GgRvL-~v~~~g~t~~eA~~~ay~~~~~i~~ 409 (428)
T COG0151 359 E-GAKVFHAGVKLDDGGQLVTSGGRVL-AVVGTGDTLEEAQEKAYEALEKIHF 409 (428)
T ss_pred c-CcEEEEeeEeccCCceEEecCCeEE-EEEecCCCHHHHHHHHHHHHhhcCC
Confidence 1 343322121 233455666 5999999999999999999999876
No 49
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.90 E-value=1.4e-22 Score=206.75 Aligned_cols=176 Identities=17% Similarity=0.165 Sum_probs=141.9
Q ss_pred ccCHHHHHHHHHh--hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 3 VNDLESAWRAGKQ--FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~--igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+.+.+++.+.++. +||||||||..+ ++|+|+++|++++|+.++++.+... ..++||+||+| +|++|+++.+.+|.
T Consensus 165 ~~~~eel~~~~~~~~IGyPvVVKP~~G-GSS~GV~~Vkn~eELe~a~~~~~~~-~~viVEe~I~G-rEitVev~vd~dG~ 241 (493)
T PRK06524 165 VDSYDELSALAHGAGLGDDLVVQTPYG-DSGSTTFFVRGQRDWDKYAGGIVGQ-PEIKVMKRIRN-VEVCIEACVTRHGT 241 (493)
T ss_pred CCCHHHHHHHHHhccCCCcEEEEECCC-CCCcCEEEeCCHHHHHHHHHHhcCC-CCEEEEeccCc-EEEEEEEEEeCCCC
Confidence 3567777777765 999999999864 4899999999999999999887542 45999999997 99999999888887
Q ss_pred EEEEeee------eeE-EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHc---CceeEEEEEEEEeC-CCcEEEEEEcC
Q 013695 81 ILCYPVV------ETI-HKENICHIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTN-NGQILLNEVAP 149 (438)
Q Consensus 81 ~~~~~~~------e~~-~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~l---g~~G~~~ve~~~~~-~g~~~viEiNp 149 (438)
+...... +.. +.+|.+...+.|+.+++++.+++++++.++.++| |+.|++.|||++++ +|++||+||||
T Consensus 242 Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 242 VIGPAMTSLVGYPELTPYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EEeccccccccceEEEEccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 6432111 222 3445544457799999999999999999999998 89999999999985 58899999999
Q ss_pred CCCCCCCccee----eccCcHHHHHHHHHhCCCCCC
Q 013695 150 RPHNSGHHTIE----SCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 150 R~~~~~~~~~~----~~~~~~~~~~l~~~~G~~l~~ 181 (438)
|+++....+.. ..+.+.|..|+++.+|+|+..
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~ 357 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYEL 357 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCcee
Confidence 99974444333 246888999999999999864
No 50
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=189.64 Aligned_cols=126 Identities=31% Similarity=0.474 Sum_probs=115.0
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCc----EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013695 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~----~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
..++|++++.++||.|+++|++.+++.+|++ ||+.|++.|| +..-+++.+.++.+++|++|||+++||++++
T Consensus 116 ~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHR----Ll~~l~r~~~~~~~~lIVvAGMEGaLPsvva 191 (254)
T COG1691 116 KGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR----LLSALKRLKIEDADVLIVVAGMEGALPSVVA 191 (254)
T ss_pred cCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHh----hhhHHHHHHhhCCCeEEEEcccccchHHHHH
Confidence 3578999999999999999999999999998 6999999999 6665666677789999999999999999999
Q ss_pred cCCCCCEEEecCC---CCCCCChhhHHHhhcC-CCCCceEEEEeCCcchHHHHHHHHHcC
Q 013695 345 ARTPLPVIGVPVR---ASALDGLDSLLSIVQM-PRGVPVATVAINNATNAGLLAVRMLGF 400 (438)
Q Consensus 345 ~~~~~pVI~~p~~---~~~~~g~~~l~s~~~~-~~gip~~tv~i~~~~~Aa~~a~~il~~ 400 (438)
++.+.|||++|++ +....|..+|++|+|. .+| +.+|||||+++||.+|+||++.
T Consensus 192 gLvD~PVIavPTsVGYG~g~gGiaaLltMLqSCspG--v~VVNIdNGfGAa~~A~~I~r~ 249 (254)
T COG1691 192 GLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPG--VGVVNIDNGFGAAVLAVQILRR 249 (254)
T ss_pred hccCCCeEecccccccCcCCccHHHHHHHHHhcCCC--eEEEEccCchHHHHHHHHHHHH
Confidence 9999999999998 4568899999999999 556 8899999999999999999975
No 51
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.89 E-value=1.6e-21 Score=197.84 Aligned_cols=288 Identities=18% Similarity=0.218 Sum_probs=213.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.+|+++.|||+|+|..++| ||+||+++++.+|++++++++.+ +.+.+.||+|++-.+++.|+.+.
T Consensus 169 Pitt~~EA~eF~k~yG~PvI~KAAyGG-GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllg 247 (1176)
T KOG0369|consen 169 PITTVEEALEFVKEYGLPVIIKAAYGG-GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLG 247 (1176)
T ss_pred CcccHHHHHHHHHhcCCcEEEeecccC-CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEec
Confidence 478999999999999999999999987 89999999999999999987531 23669999999988999999999
Q ss_pred ecCCeEE-EEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 76 GRDKSIL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~-~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|..|+++ .|...+.+++.++....+.|+. |+++++++|.+-+.++++..||.....+||.++..|+.||||+|||+.-
T Consensus 248 D~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 248 DKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred ccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 9999865 5666666677777666688887 9999999999999999999999988899999999999999999999973
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCCC------CCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecc-
Q 013695 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSMK------TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYD- 226 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~------~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~- 226 (438)
....+..-+|+|+...+++.+-|..+++.-.. .+.++.|++..+. +...|.|....++-++.-.|-.+++-+
T Consensus 328 EHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTED-Pa~~FqPdtGriEVfRSgeGmGiRLD~a 406 (1176)
T KOG0369|consen 328 EHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTED-PAKGFQPDTGRIEVFRSGEGMGIRLDGA 406 (1176)
T ss_pred eeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccC-ccccCCCCCceEEEEEeCCCceEeecCc
Confidence 33345556799999999999999999875432 3346666766543 222343222223222222222233311
Q ss_pred ----cccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcE
Q 013695 227 ----KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300 (438)
Q Consensus 227 ----~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~ 300 (438)
....++ ..-+=.|++-|.|.+-+..|..+++.++.. -|...+.+.++.+...-..+--.+
T Consensus 407 safaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRi--------------RGVKTNIpFllnvL~n~~Fl~g~~ 472 (1176)
T KOG0369|consen 407 SAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRI--------------RGVKTNIPFLLNVLTNPVFLEGTV 472 (1176)
T ss_pred cccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhh--------------cceecCcHHHHHHhcCcceeeeee
Confidence 111122 134567899999999999999999887641 123566777777665555555455
Q ss_pred EEEEE
Q 013695 301 EVRIV 305 (438)
Q Consensus 301 ~~~v~ 305 (438)
+.+.+
T Consensus 473 ~T~FI 477 (1176)
T KOG0369|consen 473 DTTFI 477 (1176)
T ss_pred eeEEe
Confidence 55543
No 52
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=2.9e-21 Score=200.45 Aligned_cols=252 Identities=13% Similarity=0.083 Sum_probs=163.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHH-----HHHHH----HHhc-------CCCCcEEEeeccCCc
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEE-----LSSAI----TALG-------GFDRGLYVEKWAPFV 66 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~ee-----l~~~~----~~~~-------~~~~~~lvEe~I~g~ 66 (438)
+++.+++.++++.. +|+||||+.+ ++|+||.+|+|.++ +.+++ +++. ...+.+||||||+|
T Consensus 131 ~~~~~ea~~~~~~~-~PvVVKP~~~-aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G- 207 (486)
T PRK05784 131 FYDVEEAAKFIEYG-GSVAIKPARQ-AGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG- 207 (486)
T ss_pred eCCHHHHHHHHhhc-CCEEEeeCCC-CCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-
Confidence 47889999998665 6999999765 48999999999873 33333 3321 12357999999998
Q ss_pred eeEEEEEEEecCCeEEEEeeeeeEEe--cC------eeeEEEcC----CC-CCHHHHHHHHHHHHHHHHHcC------ce
Q 013695 67 KELAVIVVRGRDKSILCYPVVETIHK--EN------ICHIVKAP----AA-VPWKISELATDVAHKAVSSLE------GA 127 (438)
Q Consensus 67 ~E~sv~~~~~~~G~~~~~~~~e~~~~--~g------~~~~~~~P----~~-l~~~~~~~i~~~a~~i~~~lg------~~ 127 (438)
.|+|+++++|++ .++..+..+...+ ++ ..+.++.| .+ ++++..+++.+++.+.+++|+ |+
T Consensus 208 ~E~SV~al~dG~-~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~ 286 (486)
T PRK05784 208 VEYTLQVLTDGE-TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYV 286 (486)
T ss_pred eEEEEEEEECCC-eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999999997543 4555565543221 11 12344556 44 577777777788887776663 46
Q ss_pred eEEEEEEEEe-CCCcEEEEEEcCCCCCCCCcceee-ccCcHHHHHHHHHhCCCCCCC--CCCCCceEEEEeccccccCCC
Q 013695 128 GIFAVELFWT-NNGQILLNEVAPRPHNSGHHTIES-CYTSQFEQHMRAVVGLPLGDP--SMKTPAAIMYNLLGEAEGERG 203 (438)
Q Consensus 128 G~~~ve~~~~-~~g~~~viEiNpR~~~~~~~~~~~-~~~~~~~~~l~~~~G~~l~~~--~~~~~~~~~~~il~~~~~~~~ 203 (438)
|++|+||++| ++| +||||+|+|+|++....+.. ...|+++..++.+.|. +... ......++.+.+.+..+|...
T Consensus 287 G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~~~~~~~vv~as~gYp~~~ 364 (486)
T PRK05784 287 GVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFNEEPSVVKAIAPLGYPLSR 364 (486)
T ss_pred EEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeecCCceEEEEECCCCCCCcc
Confidence 9999999999 766 99999999999888765543 4679999999998884 2222 222233554444444443210
Q ss_pred -ccch--hhhHHHHHcCCCcEEEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhc
Q 013695 204 -FYLA--HQLIGKALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKED 260 (438)
Q Consensus 204 -~~~~--~~~i~~~~~~pg~~~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i 260 (438)
+.++ +...++....++..+..-+.. -...|.|+..|++.|+|+++|++++++.++.|
T Consensus 365 ~~~~g~~i~~~~~~~~~~~~~v~~ag~~~~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i 429 (486)
T PRK05784 365 DLASGRRIVVDLDKIKEEGCLVFFGSVELEGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYV 429 (486)
T ss_pred cCCCCCEEECCccccccCCCEEEECCceeeCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhc
Confidence 1111 111111001133222221110 12234566679999999999999999999999
No 53
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.88 E-value=1.7e-21 Score=176.95 Aligned_cols=148 Identities=21% Similarity=0.308 Sum_probs=111.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC----CCcEEEeeccCCceeEEEEEEEec
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF----DRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~----~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
.+++.+++.++++.++||+||||..+ .+|+|+++++|++|+.++++.+... ...+++||||+| .|+++.++..
T Consensus 24 ~~~~~~~~~~~~~~~~~p~vvKp~~g-~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~- 100 (184)
T PF13535_consen 24 IVDSEEELRAFAEDLGFPFVVKPVDG-SGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD- 100 (184)
T ss_dssp EECSHHHHHHHHHHSSSSEEEEESS--STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-
T ss_pred EECCHHHHHHHHHHcCCCEEEEcCcc-ccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-
Confidence 36789999999999999999999765 4899999999999999998877421 245999999997 9999999987
Q ss_pred CCeEEEEeeeeeEEecC------eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCc-eeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 78 DKSILCYPVVETIHKEN------ICHIVKAPAAVPWKISELATDVAHKAVSSLEG-AGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g------~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~-~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
+|++....+.+...... .......+. +....+++++.+.++++++|+ .|++|+||+++++|++|++|+|||
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~R 178 (184)
T PF13535_consen 101 DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS--EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINPR 178 (184)
T ss_dssp TTEEEEEEEEEEEEEETCCCSSSEEEEEEES----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEESS
T ss_pred cceEEEEEEEEEecccccccccceeeeeeccc--ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECcc
Confidence 88987766665544321 112222233 333448899999999999999 799999999999998999999999
Q ss_pred CCCC
Q 013695 151 PHNS 154 (438)
Q Consensus 151 ~~~~ 154 (438)
++|+
T Consensus 179 ~~G~ 182 (184)
T PF13535_consen 179 FGGG 182 (184)
T ss_dssp --ST
T ss_pred CCCC
Confidence 9854
No 54
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.87 E-value=1.2e-20 Score=174.96 Aligned_cols=157 Identities=24% Similarity=0.301 Sum_probs=121.5
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeee
Q 013695 9 AWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e 88 (438)
..+....++||++|||...| +|.|+.+|+|.+||.++++.+..+++.+||||||+| +|+++-++.+ |+....++.+
T Consensus 25 ~~~~~~~l~~P~~VKP~~~G-sS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~G-~E~tv~vl~~--~~~~~~~~~e 100 (203)
T PF07478_consen 25 IEKILEDLGFPLFVKPASEG-SSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFISG-REFTVGVLGN--GEPRVLPPVE 100 (203)
T ss_dssp HHHHHHHHSSSEEEEESSTS-TTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--SS-EEEEEEEEES--SSTEEEEEEE
T ss_pred HHHHHhhcCCCEEEEECCCC-ccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeecc-cceEEEEEec--CCcccCceEE
Confidence 45667889999999998877 799999999999999999999887788999999987 9999999874 3455566655
Q ss_pred eEEec------------CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013695 89 TIHKE------------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 89 ~~~~~------------g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
....+ +.......|+.+++++.++|+++|.+++++||++|...+||+++++|++||+|+|+-||-+
T Consensus 101 i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt-- 178 (203)
T PF07478_consen 101 IVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLT-- 178 (203)
T ss_dssp EEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-S--
T ss_pred EEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCccccc--
Confidence 43322 1223456799999999999999999999999999999999999989999999999999832
Q ss_pred cceeeccCcHHHHHHHHHhCCC
Q 013695 157 HTIESCYTSQFEQHMRAVVGLP 178 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~ 178 (438)
..+.|..+.++ .|++
T Consensus 179 ------~~S~~p~~~~~-~G~s 193 (203)
T PF07478_consen 179 ------PTSLFPRMAEA-AGIS 193 (203)
T ss_dssp ------TTSHHHHHHHH-TT--
T ss_pred ------CCCHHHHHHHH-cCCC
Confidence 34555544443 5554
No 55
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.86 E-value=9.3e-21 Score=189.09 Aligned_cols=157 Identities=26% Similarity=0.343 Sum_probs=123.9
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeee
Q 013695 9 AWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e 88 (438)
+.++.+.++||+||||..+| +|.|+.+|++.+|+.++++.+...++.++||+||+| +|+++.++.+ ++++ .++.+
T Consensus 154 ~~~~~~~~~~P~vVKP~~~g-sS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~G-~E~~v~vl~~-~~~~--~~~~e 228 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLG-SSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIKG-REIECAVLGN-DPKA--SVPGE 228 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcCC-EEEEEEEECC-CCeE--cccEE
Confidence 45567789999999998766 789999999999999999988766677999999998 9999999965 4432 22222
Q ss_pred eE-----------EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 89 TI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 89 ~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
.. +..+. ...+.|+.+++++.+++++++.+++++||++|++++||+++++|++||+|+|+|||-+
T Consensus 229 i~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t--- 304 (333)
T PRK01966 229 IVKPDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFT--- 304 (333)
T ss_pred EecCCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCC---
Confidence 11 11121 3345788999999999999999999999999999999999988899999999999832
Q ss_pred ceeeccCcHHHHHHHHHhCCCCC
Q 013695 158 TIESCYTSQFEQHMRAVVGLPLG 180 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~ 180 (438)
..++|..+.++ .|.++.
T Consensus 305 -----~~s~~p~~~~~-~G~~~~ 321 (333)
T PRK01966 305 -----PISMYPKLWEA-SGLSYP 321 (333)
T ss_pred -----cccHHHHHHHH-cCCCHH
Confidence 34566555543 566554
No 56
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=2.1e-20 Score=188.08 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=127.1
Q ss_pred CHHHHHHH-HHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEE
Q 013695 5 DLESAWRA-GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILC 83 (438)
Q Consensus 5 s~ee~~~~-~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~ 83 (438)
+.+++.+. .+.+|||+||||..+| +|.|+.+++|.+|+.++++.+...+..+|||+||+| +|+++.++.+. ....
T Consensus 158 ~~~~~~~~~~~~lg~PviVKP~~~G-sS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~G-rEi~v~Vlg~~--~~~v 233 (364)
T PRK14570 158 DKEGIKKDIKEVLGYPVIVKPAVLG-SSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIEA-REIECSVIGNE--QIKI 233 (364)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCC-CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcCC-EEEEEEEECCC--CceE
Confidence 45566544 4679999999998866 689999999999999999998876677999999997 99999998543 3344
Q ss_pred EeeeeeEEec--------------CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEc
Q 013695 84 YPVVETIHKE--------------NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVA 148 (438)
Q Consensus 84 ~~~~e~~~~~--------------g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiN 148 (438)
+++.|....+ +.......|+++++++.+++++++.+++++||++|.+++||++++ +|++||+|+|
T Consensus 234 ~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiN 313 (364)
T PRK14570 234 FTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEIN 313 (364)
T ss_pred eeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEee
Confidence 4544433211 222233578999999999999999999999999999999999986 4889999999
Q ss_pred CCCCCCCCcceeeccCcHHHHHHHHHhCCCCCC
Q 013695 149 PRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 149 pR~~~~~~~~~~~~~~~~~~~~l~~~~G~~l~~ 181 (438)
++||-+ ..++|..+.++ .|+++.+
T Consensus 314 t~PG~t--------~~S~~p~~~~~-~G~~~~~ 337 (364)
T PRK14570 314 TIPGFT--------DISMFAKMCEH-DGLQYKS 337 (364)
T ss_pred CCCCCC--------cccHHHHHHHH-cCCCHHH
Confidence 999832 34666655544 5665543
No 57
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=2.2e-20 Score=187.42 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=124.9
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecC-Ce--E
Q 013695 5 DLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD-KS--I 81 (438)
Q Consensus 5 s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~-G~--~ 81 (438)
+.+++.+..++++||+||||..+| +|.||.+|+|.+||.++++.+...++.+||||||+| +|+++.++.+.+ |+ .
T Consensus 159 ~~~~~~~~~~~l~~PvvVKP~~gg-sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~G-~E~sv~vi~~~~~g~~~~ 236 (347)
T PRK14572 159 SPRKTLLKLESLGFPQFLKPVEGG-SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLSG-TEVSCGVLERYRGGKRNP 236 (347)
T ss_pred ChHHHHHHHHhcCCCEEEecCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCccc-EEEEEEEEeCccCCCCCc
Confidence 345555566789999999998766 789999999999999999987655566999999997 999999986422 33 3
Q ss_pred EEEeeeeeEEecC----------eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCC
Q 013695 82 LCYPVVETIHKEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 82 ~~~~~~e~~~~~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
..+++.|....++ .....+.|+++++++.+++++++.+++++||++|++++||+++ +|++||+|+|++|
T Consensus 237 ~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEiNt~P 315 (347)
T PRK14572 237 IALPATEIVPGGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILETNTLP 315 (347)
T ss_pred eecccEEEecCCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEeeeCCC
Confidence 4455544322111 1233457999999999999999999999999999999999997 5789999999999
Q ss_pred CCCCCcceeeccCcHHHHHHHHHhCCCC
Q 013695 152 HNSGHHTIESCYTSQFEQHMRAVVGLPL 179 (438)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~G~~l 179 (438)
|.+. .+++..+.++ .|+++
T Consensus 316 G~t~--------~S~~p~~~~~-~G~~~ 334 (347)
T PRK14572 316 GMTE--------TSLIPQQAKA-AGINM 334 (347)
T ss_pred CCCc--------ccHHHHHHHH-cCCCH
Confidence 8333 3555555443 45544
No 58
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.85 E-value=8.3e-20 Score=181.60 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=131.4
Q ss_pred ccCHHHHHH--HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 3 VNDLESAWR--AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~--~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+++.+|+.+ +.++++||+|+||.. |++|+|+++++|.+|+.++++... .+++||||+| .|+++.++++.+|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~P~viKP~~-g~~s~gv~~v~~~~el~~~~~~~~----~~lvqeyi~G-~e~~v~~~~~~~G~ 205 (326)
T PRK12767 132 PESLEDFKAALAKGELQFPLFVKPRD-GSASIGVFKVNDKEELEFLLEYVP----NLIIQEFIEG-QEYTVDVLCDLNGE 205 (326)
T ss_pred ccCHHHHHhhhhcccCCCCEEEEeCC-CCCccCeEEeCCHHHHHHHHHhCC----CeEEEeccCC-ceEEEEEEEcCCCC
Confidence 467888887 567899999999965 558999999999999999887653 4999999997 99999999877888
Q ss_pred EEEEeeeeeEE-ecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcce
Q 013695 81 ILCYPVVETIH-KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (438)
Q Consensus 81 ~~~~~~~e~~~-~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~ 159 (438)
+..+...+... ..|........ . .+++++++.+++++||++|++++||++++ |.+|++|+|||++++.. ..
T Consensus 206 ~~~~~~~~~~~~~~g~~~~~~~~---~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~-~~ 277 (326)
T PRK12767 206 VISIVPRKRIEVRAGETSKGVTV---K---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYP-LS 277 (326)
T ss_pred EEEEEEeeeeeecCCceeEEEEc---C---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcch-hh
Confidence 87666555432 23322211111 1 25688999999999999999999999986 77999999999986543 33
Q ss_pred eeccCcHHHHHHHHHhCCCCCCC
Q 013695 160 ESCYTSQFEQHMRAVVGLPLGDP 182 (438)
Q Consensus 160 ~~~~~~~~~~~l~~~~G~~l~~~ 182 (438)
..+|+|+++.+++.++|.++...
T Consensus 278 ~~~G~n~~~~~~~~~~g~~~~~~ 300 (326)
T PRK12767 278 YMAGANEPDWIIRNLLGGENEPI 300 (326)
T ss_pred HhhCCCHHHHHHHHHcCCCCCcc
Confidence 46799999999999999987543
No 59
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.85 E-value=2.7e-20 Score=186.44 Aligned_cols=157 Identities=22% Similarity=0.351 Sum_probs=121.4
Q ss_pred HHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeee---
Q 013695 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET--- 89 (438)
Q Consensus 13 ~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~--- 89 (438)
.+.++||+||||..+| +|+|+.+++|.+||.++++.+..+++.+|||+||+| +|+++.++.+.++ ....++.+.
T Consensus 161 ~~~l~~P~iVKP~~~g-sS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~sv~vl~~~~~-~~~~~~~~i~~~ 237 (343)
T PRK14568 161 AATLTYPVFVKPARSG-SSFGVSKVNSADELDYAIESARQYDSKVLIEEAVVG-SEVGCAVLGNGAD-LVVGEVDQIRLS 237 (343)
T ss_pred hhhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcCC-EEEEEEEEcCCCC-cceecceEEecC
Confidence 3578999999998766 789999999999999999988766677999999998 9999998864332 222221111
Q ss_pred --EEe--------cCe-eeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013695 90 --IHK--------ENI-CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 90 --~~~--------~g~-~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
++. .+. ......|+.++++..+++++++.+++++||++|++++||+++++|++||+|||++||.+
T Consensus 238 ~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~llEINt~Pg~t---- 313 (343)
T PRK14568 238 HGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNTLPGFT---- 313 (343)
T ss_pred CCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEEEeeCCCCCC----
Confidence 110 011 12346799999999999999999999999999999999999988999999999999832
Q ss_pred eeeccCcHHHHHHHHHhCCCCCC
Q 013695 159 IESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l~~ 181 (438)
..++|..+.+ +.|+++++
T Consensus 314 ----~~S~~p~~~~-~~G~~~~~ 331 (343)
T PRK14568 314 ----SYSRYPRMMA-AAGIPLAE 331 (343)
T ss_pred ----ccCHHHHHHH-HcCCCHHH
Confidence 4567766663 46776543
No 60
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.85 E-value=5.4e-22 Score=207.23 Aligned_cols=243 Identities=19% Similarity=0.230 Sum_probs=194.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.+++.||+.++++++|||++++..+ ..||.|--.++|++||......+...+.+++||+-+.|++|+..++++|..+++
T Consensus 518 a~~sie~al~aae~l~ypvivRaay-algglgSgfa~n~eeL~~l~~~a~a~s~QilvekSlkGwkevEyevvrDa~~nc 596 (1435)
T KOG0370|consen 518 AVSTIEEALEAAERLGYPVIVRAAY-ALGGLGSGFANNEEELQDLAAQALALSPQILVEKSLKGWKEVEYEVVRDAYDNC 596 (1435)
T ss_pred hHhHHHHHHHHHHhcCcHHHHHHHH-HhcCccccccccHHHHHHHHhhccccCceeeehhhhccccceEEEEEeccccch
Confidence 3578999999999999999999987 224777789999999999888888777889999999999999999999998888
Q ss_pred EEEeeeeeEEecCee---eEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCC-cEEEEEEcCCCCCCCC
Q 013695 82 LCYPVVETIHKENIC---HIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNG-QILLNEVAPRPHNSGH 156 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~---~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g-~~~viEiNpR~~~~~~ 156 (438)
...+.+|++..-|.. ..+++|+. ++++..+.++..+.++.++||..|-+|+|+.+++.. ++++||+|.|++++..
T Consensus 597 iTvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssa 676 (1435)
T KOG0370|consen 597 ITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSA 676 (1435)
T ss_pred hhhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhh
Confidence 877777876554332 33566776 999999999999999999999999999999998854 6899999999999999
Q ss_pred cceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEeccccccc---C
Q 013695 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMR---Q 232 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~~---~ 232 (438)
+..+++|..+-....+.++|.|+++.+.......... |+| .++- +.++|.|+...|...... .
T Consensus 677 LASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~Ac----------FEp---slDY~v~KiprWDl~kf~~vs~~igss 743 (1435)
T KOG0370|consen 677 LASKATGYPLAYTAAKLALGIPLPELKNSVTKTTTAC----------FEP---SLDYCVVKIPRWDLSKFQRVSTEIGSS 743 (1435)
T ss_pred hhccCccCcHHHHHHHHhcCcccccCCcccccceecc----------cCc---chhheeeecccccHHHHHHHHHhhchh
Confidence 9999999999988899999999998764222111111 110 1111 246788875443321111 1
Q ss_pred CceeEEEEEecCCHHHHHHHHHHHhh
Q 013695 233 QRKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 233 g~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
-++.|+||++|+++|||++||.+..+
T Consensus 744 mKSvgEvm~iGR~feea~QKalr~vd 769 (1435)
T KOG0370|consen 744 MKSVGEVMAIGRTFEEAFQKALRMVD 769 (1435)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcC
Confidence 26789999999999999999998876
No 61
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.84 E-value=3.7e-20 Score=200.01 Aligned_cols=257 Identities=18% Similarity=0.215 Sum_probs=193.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
|.|.+|..++++.+|||+++|.+.+| ||+|++.|+|.+|+...+++... ...++.+.+..++++++.|+.++|+.|+
T Consensus 225 v~~~eegLeaae~IGfPvMIKASEGG-GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn 303 (2196)
T KOG0368|consen 225 VRNVEEGLEAAEKIGFPVMIKASEGG-GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGN 303 (2196)
T ss_pred cCCHHHHHHHHHhcCCceEEEeccCC-CCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCcceeeeehhhhhcCC
Confidence 67999999999999999999999877 99999999999999999988752 2245999999999999999999999988
Q ss_pred EE-EEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCCCCCCc
Q 013695 81 IL-CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 81 ~~-~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~~~~~ 157 (438)
+. .++..+.+++.++.....+|+. -++++.++|++.|.++++..||.+...||+.+.+ +|++||+|.|||+.=-.+.
T Consensus 304 ~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~ 383 (2196)
T KOG0368|consen 304 VISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPT 383 (2196)
T ss_pred EeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccccCCc
Confidence 64 5677777766655444456887 5789999999999999999999999999999887 7999999999999833344
Q ss_pred ceeeccCcHHHHHHHHHhCCCCCCCCC------------------------CCCceEEEEeccccccCCCccchhhhHHH
Q 013695 158 TIESCYTSQFEQHMRAVVGLPLGDPSM------------------------KTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~~~~~------------------------~~~~~~~~~il~~~~~~~~~~~~~~~i~~ 213 (438)
|..-+++|+...++..++|.|+..++- ....++.+++..+. |+..|+|..+.+.+
T Consensus 384 TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEd-PddgFkPSsG~v~e 462 (2196)
T KOG0368|consen 384 TEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSED-PDDGFKPSSGTVQE 462 (2196)
T ss_pred hhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeeccC-CCCCcCCCCCeeEE
Confidence 555679999999999999999865321 01224555655433 43455543333333
Q ss_pred H--HcCCC-cE-EEe--cccccccCCceeEEEEEecCCHHHHHHHHHHHhhhcc
Q 013695 214 A--LSIPG-AT-VHW--YDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 214 ~--~~~pg-~~-~~~--~~~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
+ ...++ |. +.+ .|..........|||.++|+|+++|...+--++.++.
T Consensus 463 LnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKels 516 (2196)
T KOG0368|consen 463 LNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELS 516 (2196)
T ss_pred eccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHhee
Confidence 2 11122 21 222 0111112236789999999999999999887777553
No 62
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.84 E-value=1.5e-19 Score=164.20 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=120.6
Q ss_pred cccCHHHHHHHHHhhCCcE-EEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGYPL-MVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPv-VvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~ 74 (438)
.++|.+++.+++++.++|+ ||||+.+. +|+||.+++|.+|..++++++.. ....++||||+.| .|+|+.++
T Consensus 22 ~f~~~~~A~~~l~~~~~p~~ViKadGla-~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~ 99 (194)
T PF01071_consen 22 VFTDYEEALEYLEEQGYPYVVIKADGLA-AGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFAL 99 (194)
T ss_dssp EESSHHHHHHHHHHHSSSEEEEEESSSC-TTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCceEEccCCCC-CCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEE
Confidence 3679999999999999999 99997655 89999999999999999998753 2367999999998 99999999
Q ss_pred EecCCeEEEEeeeeeEEe--cCe------eeEEEcCCC-CCHHHHHHHHH-HHHHHHHHc-----CceeEEEEEEEEeCC
Q 013695 75 RGRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (438)
Q Consensus 75 ~~~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~~l-----g~~G~~~ve~~~~~~ 139 (438)
.|++ ++..+|..+.+.+ +|+ .+++++|.+ +++++.+++.+ +...++++| .|+|++.+.++++++
T Consensus 100 ~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~ 178 (194)
T PF01071_consen 100 TDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTED 178 (194)
T ss_dssp EESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETT
T ss_pred EcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCC
Confidence 9876 6778887776544 222 356788887 68888888875 777777776 789999999999977
Q ss_pred CcEEEEEEcCCCCCCC
Q 013695 140 GQILLNEVAPRPHNSG 155 (438)
Q Consensus 140 g~~~viEiNpR~~~~~ 155 (438)
| ++|+|+|.|+|+++
T Consensus 179 G-p~vlEfN~RfGDPE 193 (194)
T PF01071_consen 179 G-PKVLEFNVRFGDPE 193 (194)
T ss_dssp E-EEEEEEESSGSTTC
T ss_pred C-cEEEEEeCCCCCCC
Confidence 6 99999999999875
No 63
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=9.9e-20 Score=178.79 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=108.6
Q ss_pred HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCC-eEEEEeeeeeE
Q 013695 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK-SILCYPVVETI 90 (438)
Q Consensus 12 ~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G-~~~~~~~~e~~ 90 (438)
..+.++||+||||..+| +|.|+.+++|++||.++++.+... +.+|||+||+| +|+++.++.+... .+...+..+.+
T Consensus 125 ~~~~~~~P~vVKP~~gg-ss~Gv~~v~~~~eL~~a~~~~~~~-~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 125 AEDEISFPVAVKPSSGG-SSIATFKVKSIQELKHAYEEASKY-GEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred hHhhcCCCEEEEeCCCC-CCcCeEEcCCHHHHHHHHHHHHhc-CCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 35678999999998766 789999999999999999887543 35999999997 9999998854321 22233322221
Q ss_pred Ee----cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 91 HK----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 91 ~~----~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
.. .+. .....|..++++..+++++++.+++++||++|++++||+++++|++||+|||||||
T Consensus 202 ~~~~k~~~~-~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg 266 (296)
T PRK14569 202 DYESKYSGK-SIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPG 266 (296)
T ss_pred ChhhccCCC-cEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCC
Confidence 11 122 22346888999999999999999999999999999999998889999999999998
No 64
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=1.9e-19 Score=177.12 Aligned_cols=138 Identities=21% Similarity=0.279 Sum_probs=111.2
Q ss_pred HHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEe
Q 013695 13 GKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK 92 (438)
Q Consensus 13 ~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~ 92 (438)
.+.++||+||||..++ +|+||.+++|.+|+.++++.+....+.++|||||+| +|+++.++++.+ +...+++.+....
T Consensus 121 ~~~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~G-~E~sv~vl~~~~-~~~vl~~~e~~~~ 197 (299)
T PRK14571 121 TSPLGYPCVVKPRREG-SSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIPG-REMTVSILETEK-GFEVLPILELRPK 197 (299)
T ss_pred hhhcCCCEEEecCCCC-CcCCEEEECCHHHHHHHHHHHHhhCCcEEEEccccc-eEEEEEEEcCCC-CeeeeceEEEecC
Confidence 3568999999998765 789999999999999998876544456999999997 999999997643 4556666553221
Q ss_pred cC----------eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 93 EN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 93 ~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+ .......|.+++++..+++++++.+++++||++|++++||+++ +|++||+|+|++||-+
T Consensus 198 ~~~~~~~~k~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~ 268 (299)
T PRK14571 198 RRFYDYVAKYTKGETEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLT 268 (299)
T ss_pred CCccccccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCC
Confidence 11 1122345888999999999999999999999999999999997 5789999999999843
No 65
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.83 E-value=4e-19 Score=175.06 Aligned_cols=148 Identities=27% Similarity=0.332 Sum_probs=115.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
+.+.+++..+++++|||+|+||..++ +|+|+.+++|.+|+.++++.+....+.+++|+||+| +|+++.++.+....+.
T Consensus 119 ~~~~~~~~~~~~~~~~P~ivKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~E~~v~vi~~~~~~~~ 196 (304)
T PRK01372 119 LTREEDLLAAIDKLGLPLVVKPAREG-SSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIKG-RELTVAVLGGKALPVI 196 (304)
T ss_pred EeCcchHHHHHhhcCCCEEEeeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccCC-EEEEEEEECCCccceE
Confidence 46777888889999999999998755 899999999999999998877554566999999997 9999998754211111
Q ss_pred E-Eeeee--eE---EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 83 C-YPVVE--TI---HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 83 ~-~~~~e--~~---~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
. .+... .. +..|. .....|..++++..+++++++.++++++|++|++++||+++++|++||+|+|||++.
T Consensus 197 ~~~~~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~ 272 (304)
T PRK01372 197 EIVPAGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGM 272 (304)
T ss_pred EEEecCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCC
Confidence 1 11000 00 11121 233557678999999999999999999999999999999998899999999999974
No 66
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.82 E-value=2.7e-19 Score=198.01 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=126.2
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeee
Q 013695 9 AWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e 88 (438)
+.++.+++|||+||||..+| +|.|+.+|+|++||.++++.+..+++.+|||||+.+++|+++.++.+.++.+...++.+
T Consensus 602 ~~~~~~~lg~P~iVKP~~~G-sS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~~~~e 680 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLG-SSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDGSSAYVIAGPHE 680 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCCCCceEeccceE
Confidence 45667889999999998877 68999999999999999998876666799999998779999999987665433323222
Q ss_pred eE-----------E-ecCee-eEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 89 TI-----------H-KENIC-HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 89 ~~-----------~-~~g~~-~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
.. + ..|.. .....|+.+++++.+++++++.++.++||++|+++|||+++++|++||+|+|||||-+
T Consensus 681 ~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~PG~t- 759 (809)
T PRK14573 681 RRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPIPGMT- 759 (809)
T ss_pred EccCCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC-
Confidence 11 1 11211 2234688999999999999999999999999999999999988999999999999832
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCC
Q 013695 156 HHTIESCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~ 181 (438)
..++|..+.++ .|+++++
T Consensus 760 -------~~s~~p~~~~~-~G~~~~~ 777 (809)
T PRK14573 760 -------EASPFLTAFVR-KGWTYEQ 777 (809)
T ss_pred -------cccHHHHHHHH-cCCCHHH
Confidence 33555555433 4655443
No 67
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.82 E-value=3.6e-19 Score=176.26 Aligned_cols=140 Identities=26% Similarity=0.377 Sum_probs=110.0
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeee-
Q 013695 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET- 89 (438)
Q Consensus 11 ~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~- 89 (438)
++.+.++||+||||..++ +|+|+.+++|.+|+.++++.+....+.+++|+||+| +|+++.++.+.++........+.
T Consensus 140 ~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~ 217 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREG-SSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIE 217 (315)
T ss_pred HHHHhcCCCEEEEeCCCC-CccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCC
Confidence 445689999999997755 899999999999999998877655566999999997 99999998643321111111110
Q ss_pred -E------EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 90 -I------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 90 -~------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+ +..+. .....|..++++..+++++++.+++++||+.|++++||+++++|++||+|+|||||.
T Consensus 218 ~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~ 287 (315)
T TIGR01205 218 GFYDYEAKYLDGS-TEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGM 287 (315)
T ss_pred CeeCcccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCC
Confidence 1 11122 333467789999999999999999999999999999999998888999999999973
No 68
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.76 E-value=7.7e-17 Score=162.48 Aligned_cols=328 Identities=16% Similarity=0.110 Sum_probs=208.7
Q ss_pred cccCHHHHHHHHHhhCC-cEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------CCCCcEEEeeccCCceeEEEEEE
Q 013695 2 EVNDLESAWRAGKQFGY-PLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------GFDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------~~~~~~lvEe~I~g~~E~sv~~~ 74 (438)
++++.+++..|+++..| ++|||.+.+. .|+||.+..+.+|.-++.+.+. +....++|||+++| .|+|+.++
T Consensus 128 ~ft~~e~a~sfi~~~~~~~~ViKAdGLA-AGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laf 205 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQSATDKALVIKADGLA-AGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAF 205 (788)
T ss_pred eeCCHHHHHHHHHhCCCcceEEeecccc-cCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEE
Confidence 46789999999999995 6999997665 8999999999999999988764 22367999999998 99999999
Q ss_pred EecCCeEEEEeeeeeEEe--cCe------eeEEEcCCC-CCHHHHHHHHH-HHHHHHHHc-----CceeEEEEEEEEeCC
Q 013695 75 RGRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATD-VAHKAVSSL-----EGAGIFAVELFWTNN 139 (438)
Q Consensus 75 ~~~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~-~a~~i~~~l-----g~~G~~~ve~~~~~~ 139 (438)
.|+. .+...|+.+++.+ +|+ .++.++|++ .++++++.+.+ +.++.++.| .|.|++...++++++
T Consensus 206 tDG~-s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~ 284 (788)
T KOG0237|consen 206 TDGY-SVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKD 284 (788)
T ss_pred ecCc-ccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecC
Confidence 8765 4667777766544 222 245678888 67777776653 555555554 678999999999988
Q ss_pred CcEEEEEEcCCCCCCCCcceeec-cCcHHHHHHHHHhCCCCCCCCCCCC-ceEEEEeccccccCCCccch--hhhHHHHH
Q 013695 140 GQILLNEVAPRPHNSGHHTIESC-YTSQFEQHMRAVVGLPLGDPSMKTP-AAIMYNLLGEAEGERGFYLA--HQLIGKAL 215 (438)
Q Consensus 140 g~~~viEiNpR~~~~~~~~~~~~-~~~~~~~~l~~~~G~~l~~~~~~~~-~~~~~~il~~~~~~~~~~~~--~~~i~~~~ 215 (438)
| +.++|+|.|+|+++.+.++.. ..|+++.. .+++...|......+. .+++..++.....+..+.++ +.++.+.
T Consensus 285 ~-P~vLEfN~RFGDPEtQv~l~lLesDL~evi-~a~~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~- 361 (788)
T KOG0237|consen 285 G-PKVLEFNVRFGDPETQVLLPLLESDLAEVI-LACCNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEA- 361 (788)
T ss_pred C-ccEEEEecccCCchhhhhHHHHHhHHHHHH-HHHhhCCccccCccccccceEEEEEecCCCCCCCcCCcccccCccc-
Confidence 7 899999999999999887765 45566554 4557666665444321 23333333333222223221 1122221
Q ss_pred cCCCcEEEeccc------ccccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHH
Q 013695 216 SIPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDA 289 (438)
Q Consensus 216 ~~pg~~~~~~~~------~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~ 289 (438)
..|+..+..-|. ..+..||.++ |.++++|.++|.+.++.....|++. + ..--+++...+
T Consensus 362 ~~~~~rVFHAGTs~~ss~vvTNGGRVLs-VTA~~~~L~sA~e~Ayk~v~~I~Fs-------g-------~~yRkDI~~ra 426 (788)
T KOG0237|consen 362 DRPGTRVFHAGTSLDSSNVVTNGGRVLS-VTATGDDLESAAETAYKAVQVISFS-------G-------KFYRKDIAWRA 426 (788)
T ss_pred CCCcceEEeccccccccceEecCceEEE-EEecCchHHHHHHHHHHHheEEeec-------c-------ccccchhhhhh
Confidence 123444322221 1234456665 9999999999999999999988652 1 00011111111
Q ss_pred ---------HHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 290 ---------AKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 290 ---------~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
.-..++-|+++++. .-.-++...+.+.-+.-|+++.| |+-++|-++=.+.-..|++..-+.
T Consensus 427 ~~~~~~st~sLTYkdSGV~id~G----n~lVqrIk~l~k~T~rpG~~~di---GGFgglfdLk~ag~~d~~Lv~~td 496 (788)
T KOG0237|consen 427 FKNKDDSTPSLTYKDSGVDIDAG----NELVQRIKPLVKGTRRPGADADI---GGFGGLFDLKQAGFKDPLLVSGTD 496 (788)
T ss_pred cchhhcCCccccccccCccccch----HHHHHHHHHhhhcccCCCccccc---cccceeeehhhcCCCCceEEEecc
Confidence 22445667777776 22223333344333344554444 455566666555555777765553
No 69
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.76 E-value=2.5e-17 Score=161.79 Aligned_cols=166 Identities=20% Similarity=0.248 Sum_probs=128.1
Q ss_pred cccCHHHHHHHHHhhCCc---EEEEecCCCCCCcCcEEeC-CHHHHHHHHH-------------Hhc--CCCCcEEEeec
Q 013695 2 EVNDLESAWRAGKQFGYP---LMVKSKRLAYDGRGNAVAK-SEEELSSAIT-------------ALG--GFDRGLYVEKW 62 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP---vVvKP~~~g~~g~Gv~iv~-~~eel~~~~~-------------~~~--~~~~~~lvEe~ 62 (438)
.++|.+|+.++++++++| +.|||.. |.+|+|.++++ +.+++...+. .+. +....+||.+|
T Consensus 127 ~v~t~~el~~a~~~l~~~~~~~CvKP~~-g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMey 205 (329)
T PF15632_consen 127 RVRTADELKAAYEELRFPGQPLCVKPAV-GIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEY 205 (329)
T ss_pred EeCCHHHHHHHHHhcCCCCceEEEeccc-CCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecC
Confidence 478999999999999887 9999976 45899999998 5556554443 111 23366999999
Q ss_pred cCCceeEEEEEEEecCCeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcE
Q 013695 63 APFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQI 142 (438)
Q Consensus 63 I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~ 142 (438)
++| .|+||+++++. |++...-+..+ .|. ...+. . ..++.+++.++++.+++.|++||||+.|.+|.+
T Consensus 206 L~G-~EySVD~l~~~-G~viaaV~R~K---~G~-~q~l~---~----~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p 272 (329)
T PF15632_consen 206 LPG-PEYSVDCLADE-GRVIAAVPRRK---LGR-RQVLE---N----DEELIELARRLAEAFGLDGLFNIQFRYDEDGNP 272 (329)
T ss_pred CCC-CeEEEEEEecC-CEEEEEEEEEe---cCc-eeEEE---E----CHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCE
Confidence 998 99999999865 78764433222 242 11111 1 235888999999999999999999999889999
Q ss_pred EEEEEcCCCCCCCCcceeeccCcHHHHHHHHHhCCCCCCC
Q 013695 143 LLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDP 182 (438)
Q Consensus 143 ~viEiNpR~~~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~ 182 (438)
+++|||||++|+-+++ ..+|+|+....+..++|.+.+..
T Consensus 273 ~LLEINpR~sGGi~~s-~~aGvNlp~la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 273 KLLEINPRPSGGIGYS-CAAGVNLPYLAVKLALGEPIPPP 311 (329)
T ss_pred EEEEeCCCCccchhhH-hhcCCChHHHHHHHHcCCCCCCc
Confidence 9999999998554444 36799999999999999988765
No 70
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.70 E-value=5.2e-16 Score=154.75 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=107.5
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC-----CCCcEEEeeccCCceeEEEEEEEec-CCeEEEEeeee
Q 013695 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG-----FDRGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVE 88 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~-----~~~~~lvEe~I~g~~E~sv~~~~~~-~G~~~~~~~~e 88 (438)
+++||+|||| .++++|+|+++|+|++|+.++++.+.. ....++|||||.| .|++++++... +|++.+..+.+
T Consensus 147 ~i~~PvIVKp-~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~ 224 (358)
T PRK13278 147 DIDRPVIVKL-PGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDR 224 (358)
T ss_pred HcCCCEEEEe-CCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeece
Confidence 3579999999 567899999999999999999988531 2356999999998 89999998753 67877777655
Q ss_pred eEEec--Cee--------------e---EEEcCCCCCHHHHHHHHHHHHHHHHH----c--CceeEEEEEEEEeCCCcEE
Q 013695 89 TIHKE--NIC--------------H---IVKAPAAVPWKISELATDVAHKAVSS----L--EGAGIFAVELFWTNNGQIL 143 (438)
Q Consensus 89 ~~~~~--g~~--------------~---~~~~P~~l~~~~~~~i~~~a~~i~~~----l--g~~G~~~ve~~~~~~g~~~ 143 (438)
.+..+ +.. . ....|+.+.+.+..++.+.+.+++++ + +..|++++|+++++++.+|
T Consensus 225 r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~ 304 (358)
T PRK13278 225 RYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIV 304 (358)
T ss_pred eeeecccceeeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEE
Confidence 44332 100 0 11246778888889999999888887 4 5679999999999999999
Q ss_pred EEEEcCCCC
Q 013695 144 LNEVAPRPH 152 (438)
Q Consensus 144 viEiNpR~~ 152 (438)
|+|+|+|+.
T Consensus 305 V~Eis~R~~ 313 (358)
T PRK13278 305 VFEISARIV 313 (358)
T ss_pred EEEEeCccc
Confidence 999999993
No 71
>PRK06849 hypothetical protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=158.96 Aligned_cols=145 Identities=16% Similarity=0.085 Sum_probs=105.9
Q ss_pred ccCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 3 VNDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
+++.+|+.++..+. +||+|+||..+ .+|+|+.++.+.+++.... ......+++||||+| .|+++.++. .+|++
T Consensus 137 v~~~~~l~~~~~~~~~~P~vlKP~~~-~~~~~v~~~~~~~~l~~~~---~~~~~~~ivQe~I~G-~e~~~~~~~-~~G~v 210 (389)
T PRK06849 137 ITDPEAIRNFMFKTPHTPYVLKPIYS-RFVRRVDLLPKEAALKELP---ISKDNPWVMQEFIQG-KEYCSYSIV-RSGEL 210 (389)
T ss_pred eCCHHHHHHHhhcCCCCcEEEEeCcc-cCCCeEEEecCHHHhcccc---cCCCCCeEEEEEecC-CeEEEEEEE-ECCEE
Confidence 57889998888776 99999999764 4889999999865543221 111234999999998 799888876 46887
Q ss_pred EEEeeeeeEEe-cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013695 82 LCYPVVETIHK-ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 82 ~~~~~~e~~~~-~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
..+......+. ++.....+.|.. .+++.+.+.+++++++++|.+++||+.+++|++|++|||||++++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~ 283 (389)
T PRK06849 211 RAHSCYKPEYCAGSGAQIAFQPIN-----HPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLF 283 (389)
T ss_pred EEEEEeeccccCCCCceeEeEECC-----cHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEc
Confidence 65544222222 222122223321 2468899999999999999999999998789999999999999766654
No 72
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.69 E-value=7.6e-16 Score=149.24 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=109.2
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC---CCcEEEeeccCCc--eeEEEEEEEec
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF---DRGLYVEKWAPFV--KELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~---~~~~lvEe~I~g~--~E~sv~~~~~~ 77 (438)
+.+.+++.+++++++||+|+||..+ ++|+|+.++++.+++.+++..+... ...+++|+||++. .++++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKP~~g-~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~--- 184 (277)
T TIGR00768 109 AGSPEEALKLIEEIGFPVVLKPVFG-SWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVV--- 184 (277)
T ss_pred eCCHHHHHHHHHhcCCCEEEEECcC-CCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEE---
Confidence 5678999999999999999999764 5899999999999999887665321 1359999999973 35555543
Q ss_pred CCeEEEEeee--eeEEecCe-eeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 78 DKSILCYPVV--ETIHKENI-CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 78 ~G~~~~~~~~--e~~~~~g~-~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
+|++...-.. ......+. ......|..+++ ++++++.+++++|++ |.+++||+++++|.+||+|+|+|++..
T Consensus 185 ~~~~~~~~~r~~~~~~~~n~~~g~~~~~~~l~~----~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~ 259 (277)
T TIGR00768 185 GDEVIAAIYRITSGHWRTNLARGGKAEPCPLTE----EIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK 259 (277)
T ss_pred CCEEEEEEEEcCCCchhhhhhcCCeeeecCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh
Confidence 3454321110 00001000 011233455554 578899999999998 899999999988899999999999732
Q ss_pred CCcceeeccCcHHHHHH
Q 013695 155 GHHTIESCYTSQFEQHM 171 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l 171 (438)
+ ....+|+|+.+..+
T Consensus 260 ~--~~~~~g~~l~~~~~ 274 (277)
T TIGR00768 260 N--SVKTTGVNIAGKLL 274 (277)
T ss_pred h--hHHHHCCCHHHHHH
Confidence 2 23345677665554
No 73
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=6.3e-16 Score=151.96 Aligned_cols=143 Identities=24% Similarity=0.279 Sum_probs=117.0
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEee
Q 013695 7 ESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (438)
Q Consensus 7 ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~ 86 (438)
..++++.+.++||++|||...| +|.|+..+++.+|+..+++.+..++..+++|+|+.+ +|+++.++.+.. +...+++
T Consensus 132 ~~~e~~~~~l~~p~~Vkp~~~g-SSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~ 208 (317)
T COG1181 132 VIVEEVEEGLGFPLFVKPAREG-SSVGRSPVNVEGDLQSALELAFKYDRDVLREQGITG-REIEVGVLGNDY-EEQALPL 208 (317)
T ss_pred HHHHHhhcccCCCEEEEcCCcc-ceeeEEEeeeccchHHHHHHHHHhCCceeeccCCCc-ceEEEEecCCcc-cceecCc
Confidence 3456677789999999998877 789999999999999988888877788999999995 999999886533 3333333
Q ss_pred eeeE------------EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013695 87 VETI------------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPH 152 (438)
Q Consensus 87 ~e~~------------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~ 152 (438)
.+.. +.+.......+|+++++++.++++++|.++.++||+.|.+.+||++++ +|++|++|+|+.||
T Consensus 209 ~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG 287 (317)
T COG1181 209 GEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPG 287 (317)
T ss_pred eEEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCC
Confidence 3221 112122344678899999999999999999999999999999999997 68899999999998
No 74
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.68 E-value=4.2e-16 Score=139.40 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=72.8
Q ss_pred hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEec--
Q 013695 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKE-- 93 (438)
Q Consensus 16 igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~-- 93 (438)
..+|+|+||.. |+||.|++++++.+++...+... .++||||+| .++|+.++.+.++ .............
T Consensus 30 ~~~~~viKp~~-G~Gg~~i~~~~~~~~~~~~~~~~------~i~Qe~i~G-~~~Sv~~l~~~~~-~~~l~~~rq~i~~~~ 100 (161)
T PF02655_consen 30 IDGPWVIKPRD-GAGGEGIRIVDSEDELEEFLNKL------RIVQEFIEG-EPYSVSFLASGGG-ARLLGVNRQLIGNDD 100 (161)
T ss_dssp -SSSEEEEESS--------B--SS--TTE-------------EEEE---S-EEEEEEEEE-SSS-EEEEEEEEEEEET--
T ss_pred cCCcEEEEeCC-CCCCCCeEEECCchhhccccccc------eEEeeeeCC-EEeEEEEEEeCCc-eEEEEechHhhcccc
Confidence 47899999965 56999999999999887654431 399999998 9999999987654 4444433222211
Q ss_pred --CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHc-CceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 94 --NICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 94 --g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~l-g~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
....+...|...+. ..++.+++.+++++| |+.|.+++||++++ +.+||+|||||+++
T Consensus 101 ~~~~~~G~~~~~~~~~--~~~~~~~~~~i~~~l~gl~G~~giD~I~~~-~~~~viEINPR~t~ 160 (161)
T PF02655_consen 101 GRFRYCGGIVPADTPL--KEEIIELARRIAEALPGLRGYVGIDFILDD-GGPYVIEINPRFTG 160 (161)
T ss_dssp --TEEEEEEES----H--HHHHHHHHHHHHTTSTT--EEEEEEEEESS--SEEEEEEESS--G
T ss_pred ceeeecccccccCCch--HHHHHHHHHHHHHHcCCCeeeEeEEEEEeC-CcEEEEEEcCCCCC
Confidence 12334455665433 788999999999999 99999999999975 67999999999974
No 75
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.68 E-value=1.5e-15 Score=149.41 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=111.6
Q ss_pred HhhCCcEEEEecCCCCC--CcCcEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCceeEEEEEEEe-cCCeEEE
Q 013695 14 KQFGYPLMVKSKRLAYD--GRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVIVVRG-RDKSILC 83 (438)
Q Consensus 14 ~~igyPvVvKP~~~g~~--g~Gv~iv~~~eel~~~~~~~~~~-------~~~~lvEe~I~g~~E~sv~~~~~-~~G~~~~ 83 (438)
+++.||+||||. +++| |+|+++++|++|+.+....+... ...++|||||.| .|++++++.+ -+|++..
T Consensus 149 ~eId~PVIVKp~-~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~ 226 (366)
T PRK13277 149 EEIDRPVIVKLP-EAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLEL 226 (366)
T ss_pred cccCccEEEEEC-CCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEE
Confidence 467899999995 5669 99999999999999887765421 134679999998 9999999987 3777655
Q ss_pred EeeeeeEEe--cCe--------------e--eEE-EcCCCCCHHHHHHHHHHHHHHHHHcC------ceeEEEEEEEEeC
Q 013695 84 YPVVETIHK--ENI--------------C--HIV-KAPAAVPWKISELATDVAHKAVSSLE------GAGIFAVELFWTN 138 (438)
Q Consensus 84 ~~~~e~~~~--~g~--------------~--~~~-~~P~~l~~~~~~~i~~~a~~i~~~lg------~~G~~~ve~~~~~ 138 (438)
..+...++. +|. . ... ..|..+.+.+.+++.+++.+++++++ ..|++++|+++++
T Consensus 227 l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~ 306 (366)
T PRK13277 227 LGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP 306 (366)
T ss_pred EEEeeccccccccccccChhhhhhcccCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC
Confidence 554432111 010 0 111 24667888899999999999999976 6799999999998
Q ss_pred CCcEEEEEEcCCCCCCCCcceeeccCcHH
Q 013695 139 NGQILLNEVAPRPHNSGHHTIESCYTSQF 167 (438)
Q Consensus 139 ~g~~~viEiNpR~~~~~~~~~~~~~~~~~ 167 (438)
|+++|++|||||.+++-. ....+|.+..
T Consensus 307 d~~~~V~EInpR~gGGtn-l~~~aGs~y~ 334 (366)
T PRK13277 307 DLDFVVYDVAPRIGGGTN-VYMGVGSPYS 334 (366)
T ss_pred CCcEEEEEEcCCcCCCcc-ceeecCCCcH
Confidence 899999999999985433 3334455533
No 76
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.67 E-value=1.8e-15 Score=147.24 Aligned_cols=161 Identities=20% Similarity=0.315 Sum_probs=112.7
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHh---cC-CCCcEEEeeccCC-ceeEEEEEEEec
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL---GG-FDRGLYVEKWAPF-VKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~---~~-~~~~~lvEe~I~g-~~E~sv~~~~~~ 77 (438)
+.+.+++.++.+.+|||+|+||..+ ++|+|+.++++.+++.++++.. .. .+..+++|+||++ ++++++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~P~vvKP~~g-~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig-- 184 (280)
T TIGR02144 108 AFDREAALKLAEALGYPVVLKPVIG-SWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG-- 184 (280)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECcC-CCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC--
Confidence 4578888888889999999999765 4899999999999998876432 11 2345999999986 4788887762
Q ss_pred CCeEE--EEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 78 DKSIL--CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 78 ~G~~~--~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
|+.. .+.....+..+........|..++++ +++++.++++++|+ |.+++||+++++|++||+|+|+|++..+
T Consensus 185 -~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~----~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 185 -DEAIAAIYRYSNHWRTNTARGGKAEPCPLDEE----VEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred -CEEEEEEEEcCCchhhhhhcCCceeccCCCHH----HHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 3332 11111111111111122446666664 67888999999996 7999999998888899999999997543
Q ss_pred CcceeeccCcHHHHHHHHH
Q 013695 156 HHTIESCYTSQFEQHMRAV 174 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~ 174 (438)
. ...+|+|.-+..++.+
T Consensus 259 ~--~~~~g~~~~~~~~~~~ 275 (280)
T TIGR02144 259 S--VRVTGVNVAGEILEYA 275 (280)
T ss_pred h--hHhhCCCHHHHHHHHH
Confidence 2 2345777776666554
No 77
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.63 E-value=5.7e-15 Score=145.39 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=111.9
Q ss_pred cCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC--CceeEEEEEEEecCCe
Q 013695 4 NDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP--FVKELAVIVVRGRDKS 80 (438)
Q Consensus 4 ~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~--g~~E~sv~~~~~~~G~ 80 (438)
.+.+++.++++++ +||+|+||..+ ++|+|++++++.+++..+++.+...+..+++||||+ .++|+.+.++. |+
T Consensus 121 ~~~~~~~~~~~~~~~~P~VvKP~~g-~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig---~~ 196 (300)
T PRK10446 121 HSPDDTSDLIDMVGGAPLVVKLVEG-TQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVG---DE 196 (300)
T ss_pred CCHHHHHHHHHHhCCCCEEEEECCC-CCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEEC---CE
Confidence 5678888888887 89999999765 489999999999999988887654445699999995 23899988763 34
Q ss_pred EEEEeeeeeEEecCee------eEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 81 ILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 81 ~~~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
++. ..+.....++. .....|..+++ ++++++.+++++||+. +.+|||+++++| +||+|||++||..
T Consensus 197 ~~~--~~~r~~~~~~~~~n~~~g~~~~~~~l~~----~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~~ 268 (300)
T PRK10446 197 VVA--AIERRAKEGDFRSNLHRGGAASVASITP----QEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGLE 268 (300)
T ss_pred EEE--EEEEecCCCchhheeccCCeeccCCCCH----HHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCChh
Confidence 321 22211111110 01122444554 4788999999999985 899999998777 8999999999743
Q ss_pred CCcceeeccCcHHHHHHHHHh
Q 013695 155 GHHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~ 175 (438)
+ ....+|+|..+..++.+.
T Consensus 269 ~--~~~~~g~~~~~~~~~~i~ 287 (300)
T PRK10446 269 G--IEKTTGIDIAGKMIRWIE 287 (300)
T ss_pred h--hHHHHCcCHHHHHHHHHH
Confidence 2 233457777766665544
No 78
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=138.47 Aligned_cols=217 Identities=17% Similarity=0.131 Sum_probs=134.0
Q ss_pred CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEE-ecCe
Q 013695 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH-KENI 95 (438)
Q Consensus 17 gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~-~~g~ 95 (438)
.+|+|+||..++ ||. +.++.-.|+.. +..+|+|+||+| +.+|+.++.++..........+.+. ..+.
T Consensus 149 ekt~IlKPv~Ga-GG~-~el~~~~Ee~~---------~~~~i~Qefi~G-~p~Svs~is~g~~a~~la~N~QiI~~~~~~ 216 (389)
T COG2232 149 EKTLILKPVSGA-GGL-VELVKFDEEDP---------PPGFIFQEFIEG-RPVSVSFISNGSDALTLAVNDQIIDGLRGE 216 (389)
T ss_pred ceeeEEeeccCC-Cce-eeecccccccC---------CcceehhhhcCC-ceeEEEEEecCcceEEEEEeeeeecccccc
Confidence 467999998654 443 33333222221 255999999998 9999999976553222221111111 0111
Q ss_pred -----eeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeeccCcHHHHH
Q 013695 96 -----CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQH 170 (438)
Q Consensus 96 -----~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~~~~~~~~ 170 (438)
..+...|.+. ...+++++++..++..||+.|.-+|||.+++.| +||+|||||+.++-...-.++++|+|++|
T Consensus 217 ~~~f~Y~GNlTP~~~--~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~~lH 293 (389)
T COG2232 217 YSQFVYKGNLTPFPY--EEVEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLFRLH 293 (389)
T ss_pred cccceeccCcCCCcc--hhhHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHHHHH
Confidence 1122345542 223789999999999999999999999998766 99999999998776666678899999999
Q ss_pred HHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHH-HH-HcCCCcEEEecccccccCCceeEEEEEecCCHHH
Q 013695 171 MRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG-KA-LSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGL 248 (438)
Q Consensus 171 l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~-~~-~~~pg~~~~~~~~~~~~~g~~iG~Vi~~G~~~~e 248 (438)
+++.-| .+++.......++ .+++-... +..++ -+. .+ ..+|. .|. ....|..+..|++.+.+.+.
T Consensus 294 i~af~G-~LpEr~kpr~~a~-krILyap~-~v~v~----~l~~~~~~DiP~-----~Gt-viekgePl~sviA~~nt~~~ 360 (389)
T COG2232 294 IQAFDG-ELPERPKPRGYAC-KRILYAPR-TVRVP----ILKLSWTHDIPR-----PGT-VIEKGEPLCSVIASSNTRSG 360 (389)
T ss_pred HHHhcC-cCcCCCCcceeEE-eEEEeccc-eeecc----cccccccccCCC-----CCc-ccCCCCceeeeeeccCCHHH
Confidence 998555 4444332223333 33332211 11111 000 00 01111 111 22335678899999999999
Q ss_pred HHHHHHHHhhhcc
Q 013695 249 VESRLNSLLKEDS 261 (438)
Q Consensus 249 a~~ka~~~~~~i~ 261 (438)
|..-+.+.+..++
T Consensus 361 a~~~~er~~ervk 373 (389)
T COG2232 361 AESMAERLAERVK 373 (389)
T ss_pred HHHHHHHHHHHHH
Confidence 9998777766443
No 79
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.54 E-value=1.2e-13 Score=127.00 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCc--eeEEEEEEEecCC
Q 013695 3 VNDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGRDK 79 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~--~E~sv~~~~~~~G 79 (438)
+.+.+++.++++++ +||+|+||..+ +.|+||.++++.+++...++........+++|+||+.. +++.+.++. |
T Consensus 24 ~~~~~~~~~~~~~~~~~p~ViKp~~g-~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig---~ 99 (190)
T PF08443_consen 24 TNSPEEAKEFIEELGGFPVVIKPLRG-SSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKDGGRDLRVYVIG---G 99 (190)
T ss_dssp ESSHHHHHHHHHHH--SSEEEE-SB--------EEEESHCHHHHHHH-----TTT-EEEE----SS---EEEEEET---T
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCC-CCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCCCCcEEEEEEEC---C
Confidence 56899999999999 89999999764 48999999999999999887654333459999999863 588888872 4
Q ss_pred eEEEE-eee--e-eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013695 80 SILCY-PVV--E-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~-~~~--e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
+++.. ... + .+..+-.......|..+++ ++.+++.++++++|+ .++.||++.+ ++++||+|+|+.++-.
T Consensus 100 ~vv~a~~r~~~~~d~r~n~~~g~~~~~~~l~~----e~~~~a~~~~~~lgl-~~~giDi~~~-~~~~~v~EvN~~~~~~- 172 (190)
T PF08443_consen 100 KVVGAYRRSSPEGDFRTNLSRGGKVEPYDLPE----EIKELALKAARALGL-DFAGIDILDT-NDGPYVLEVNPNPGFR- 172 (190)
T ss_dssp EEEEEEE------------------EE----H----HHHHHHHHHHHHTT--SEEEEEEEEE-TTEEEEEEEETT---T-
T ss_pred EEEEEEEEecCcccchhhhccCceEEEecCCH----HHHHHHHHHHHHhCC-CEEEEEEEec-CCCeEEEEecCCchHh-
Confidence 55332 111 1 1111111111234555554 577889999999987 7889997655 5669999999999722
Q ss_pred CcceeeccCcHHHHHHH
Q 013695 156 HHTIESCYTSQFEQHMR 172 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~ 172 (438)
+....+|++.....++
T Consensus 173 -~~~~~~g~~i~~~i~~ 188 (190)
T PF08443_consen 173 -GIEEATGIDIAEEIAE 188 (190)
T ss_dssp -THHHHH---HHHHHHH
T ss_pred -HHHHHHCcCHHHHHHh
Confidence 2334556776665543
No 80
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.32 E-value=3e-11 Score=131.96 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=113.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~i-v~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
+.+.+++.++++++|||+|+||..++ +|+||.+ ++|++|+.++++.+......++||+||+| +|+.+.++ +|++
T Consensus 235 v~s~~~a~~~a~~iG~PvVVKP~~G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~G-~d~Rv~Vv---gg~v 309 (727)
T PRK14016 235 VTSAEDAWEAAEEIGYPVVVKPLDGN-HGRGVTVNITTREEIEAAYAVASKESSDVIVERYIPG-KDHRLLVV---GGKL 309 (727)
T ss_pred eCCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecCC-ceEEEEEE---CCEE
Confidence 57899999999999999999997654 8999998 99999999999887654567999999997 89998765 2454
Q ss_pred EEEeeee--eEEecCee------------------------------------------eEEEc----------------
Q 013695 82 LCYPVVE--TIHKENIC------------------------------------------HIVKA---------------- 101 (438)
Q Consensus 82 ~~~~~~e--~~~~~g~~------------------------------------------~~~~~---------------- 101 (438)
+...... ++.-+|.. ..+++
T Consensus 310 vaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~ 389 (727)
T PRK14016 310 VAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLST 389 (727)
T ss_pred EEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccC
Confidence 3221110 00000000 00000
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC------CCcEEEEEEcCCCCCCCCc-ceeeccCcHHHHHH
Q 013695 102 ---PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHH-TIESCYTSQFEQHM 171 (438)
Q Consensus 102 ---P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~------~g~~~viEiNpR~~~~~~~-~~~~~~~~~~~~~l 171 (438)
....++++..+..+++.++++.+|+ +++.||++..+ +....|+|+|..|+=..+. .......+.....+
T Consensus 390 Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Ii 468 (727)
T PRK14016 390 GGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIV 468 (727)
T ss_pred CCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHH
Confidence 1123556677789999999999987 88899998753 1236899999999854433 22334555555555
Q ss_pred HH
Q 013695 172 RA 173 (438)
Q Consensus 172 ~~ 173 (438)
..
T Consensus 469 d~ 470 (727)
T PRK14016 469 DM 470 (727)
T ss_pred HH
Confidence 54
No 81
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=6.3e-11 Score=116.94 Aligned_cols=141 Identities=20% Similarity=0.294 Sum_probs=95.8
Q ss_pred ccCHHHHHHHHH-hhCCcEEEEecCCCCCCcCcEEeCCHH-HHHHHHHHhcCCC-CcEEEeeccCCce-eEEEEEEEecC
Q 013695 3 VNDLESAWRAGK-QFGYPLMVKSKRLAYDGRGNAVAKSEE-ELSSAITALGGFD-RGLYVEKWAPFVK-ELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~-~igyPvVvKP~~~g~~g~Gv~iv~~~e-el~~~~~~~~~~~-~~~lvEe~I~g~~-E~sv~~~~~~~ 78 (438)
+.+.+++.++++ .+|||+|+||.. |++|+||++++|.+ ++.+.++.+.+.. ..+|+||||+-.. ..-..++ .+
T Consensus 140 ~~~~~~~~~~~~~~~g~pvVlKp~~-Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv--~~ 216 (318)
T COG0189 140 TRDPDEAAEFVAEHLGFPVVLKPLD-GSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLV--GG 216 (318)
T ss_pred EcCHHHHHHHHHHhcCCCEEEeeCC-CCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEE--eC
Confidence 345566666665 568999999965 56999999999999 9988888876543 4599999998533 3333333 23
Q ss_pred CeEEEEeeeeeEEecCee------eEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 79 KSILCYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
|.+..+-....+..+++. .....|..+++ +++++|.+++++||. ++..||++.+++| .||+|+|..|+
T Consensus 217 ~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e~~~l~~----e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~ 290 (318)
T COG0189 217 GEVVAIYALARIPASGDFRSNLARGGRAEPCELTE----EEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPT 290 (318)
T ss_pred CEEeEEeeeccccCCCCceeeccccccccccCCCH----HHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCc
Confidence 454332100111111111 11234666776 478899999999976 8889999998655 89999999775
No 82
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.28 E-value=4.1e-11 Score=126.92 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=103.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~i-v~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
+.+.+++.++++++| |+||||..+ ++|+|+.+ ++|++++.++++.+......++||+|++| .|+.+.++. |++
T Consensus 318 ~~~~~~~~~~~~~~G-~vVVKP~~G-~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~G-~d~Rv~Vig---g~v 391 (547)
T TIGR03103 318 AGNGEAVEAFLAEHG-AVVVKPVRG-EQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVPG-EDLRLVVID---FEV 391 (547)
T ss_pred ECCHHHHHHHHHHhC-CEEEEECCC-CCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEeccC-CeEEEEEEC---CEE
Confidence 467889999999999 699999765 48999997 99999999999887655567999999997 888887652 343
Q ss_pred EEEeeee--eEEecCe---------------------e------------------eEEE-------------------c
Q 013695 82 LCYPVVE--TIHKENI---------------------C------------------HIVK-------------------A 101 (438)
Q Consensus 82 ~~~~~~e--~~~~~g~---------------------~------------------~~~~-------------------~ 101 (438)
+..-... ++.-+|. . ..++ .
T Consensus 392 vaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~ 471 (547)
T TIGR03103 392 VAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT 471 (547)
T ss_pred EEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe
Confidence 2111000 0000000 0 0000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-C-CcEEEEEEcCCCCCCCC
Q 013695 102 PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-N-GQILLNEVAPRPHNSGH 156 (438)
Q Consensus 102 P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~-g~~~viEiNpR~~~~~~ 156 (438)
...+++++..+++++|.++++++|+ .++.||++.++ + ....|||+|.|||-..|
T Consensus 472 ~~dvtd~~~~~~~~~A~~aa~~~gl-~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 472 IHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred eEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 1124566778899999999999987 68889999864 2 23589999999984444
No 83
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.23 E-value=1.2e-10 Score=125.46 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=101.0
Q ss_pred ccCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEeCC---HHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVAKS---EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv~~---~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
+++.+++.+....+ +||+||||..++ +|+||.++.+ .+|+.+++..+...+..+|||+||+| +|+++.++.+
T Consensus 496 ~~~~~~a~~~~~~~~g~PVVVKP~~g~-~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~G-~EyRv~VIg~-- 571 (737)
T TIGR01435 496 FSSQALALEAFSLFENKAIVVKPKSTN-YGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLPG-TEYRFFVLND-- 571 (737)
T ss_pred ECCHHHHHHHHHHhcCCCEEEeeCCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEecccC-CEEEEEEECC--
Confidence 56677777777776 799999997655 8999999876 78999999887766667999999998 9999987732
Q ss_pred CeEEEEe-e-eeeEEec-----------------------------------------CeeeEEEc--------------
Q 013695 79 KSILCYP-V-VETIHKE-----------------------------------------NICHIVKA-------------- 101 (438)
Q Consensus 79 G~~~~~~-~-~e~~~~~-----------------------------------------g~~~~~~~-------------- 101 (438)
++.... . .-++.-+ |....+++
T Consensus 572 -kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 572 -KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred -eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 221100 0 0000000 00000011
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC--------CcEEEEEEcCCCCCC
Q 013695 102 -----PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN--------GQILLNEVAPRPHNS 154 (438)
Q Consensus 102 -----P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~--------g~~~viEiNpR~~~~ 154 (438)
+..+++++....+++|.++++++|.. ++.||+++.+- ....|||+|.+|+-.
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 12356778888999999999999985 88999987521 124589999999833
No 84
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.18 E-value=4.3e-10 Score=125.26 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=114.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEE-eCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCe
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAV-AKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~i-v~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
.+.+.+++.++++++|||+|+||..+ ++|+||.+ ++|++|+.++++.+...+..+|||+|++| +|+++.++ +|+
T Consensus 233 ~~~s~~ea~~~~~~ig~PvVVKP~~g-~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~G-~e~rvlVv---~~~ 307 (864)
T TIGR02068 233 VVQSAEDAWEAAQDLGYPVVIKPYDG-NHGRGVTINILTRDEIESAYEAAVEESSGVIVERFITG-RDHRLLVV---GGK 307 (864)
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCC-CCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEeccC-CEEEEEEE---CCE
Confidence 36789999999999999999999764 48999998 99999999999887655566999999998 99999775 234
Q ss_pred EEEEe--eeeeEEec------------------C------------------------eeeEEEc---------------
Q 013695 81 ILCYP--VVETIHKE------------------N------------------------ICHIVKA--------------- 101 (438)
Q Consensus 81 ~~~~~--~~e~~~~~------------------g------------------------~~~~~~~--------------- 101 (438)
++... ...++.-+ | ....+++
T Consensus 308 vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls 387 (864)
T TIGR02068 308 VVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLS 387 (864)
T ss_pred EEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEecccccc
Confidence 32210 00000000 0 0000000
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC------CCcEEEEEEcCCCCCCCCc-ceeeccCcHHHHH
Q 013695 102 ----PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NGQILLNEVAPRPHNSGHH-TIESCYTSQFEQH 170 (438)
Q Consensus 102 ----P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~------~g~~~viEiNpR~~~~~~~-~~~~~~~~~~~~~ 170 (438)
..+.++++..+..++|.++++.+|+ .++.||++..+ +....|+|+|+.||-..|. .....+.+.....
T Consensus 388 ~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~I 466 (864)
T TIGR02068 388 TGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAI 466 (864)
T ss_pred CCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHH
Confidence 1124667777889999999999987 67778988742 1235799999999855543 2334456666666
Q ss_pred HHHH
Q 013695 171 MRAV 174 (438)
Q Consensus 171 l~~~ 174 (438)
+...
T Consensus 467 l~~l 470 (864)
T TIGR02068 467 VDML 470 (864)
T ss_pred HHHh
Confidence 6554
No 85
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.14 E-value=5.9e-10 Score=121.68 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=101.5
Q ss_pred ccCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEe---CCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVA---KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv---~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
+.+.+++.+.++++ |||+||||..++ +|+||.++ ++.+++.+++..+...+..+||||||+| +|+++.++.
T Consensus 509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~G-~E~Rv~Vig--- 583 (752)
T PRK02471 509 FTSLEEALADYSLFADKAIVVKPKSTN-FGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIVG-TEYRFFVLD--- 583 (752)
T ss_pred EcCHHHHHHHHHHhcCCCEEEEECCCC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEecccC-CEEEEEEEC---
Confidence 56788888877764 899999997654 89999986 4688999998887665567999999997 999998762
Q ss_pred CeEEE----Eee--e-------------ee---------------EEec----------CeeeEEEc-------------
Q 013695 79 KSILC----YPV--V-------------ET---------------IHKE----------NICHIVKA------------- 101 (438)
Q Consensus 79 G~~~~----~~~--~-------------e~---------------~~~~----------g~~~~~~~------------- 101 (438)
|+++. .|. + ++ +..+ |....+++
T Consensus 584 gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~N 663 (752)
T PRK02471 584 GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSN 663 (752)
T ss_pred CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCc
Confidence 33211 110 0 00 0000 00000011
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC------CC--cEEEEEEcCCCCCCCC
Q 013695 102 ------PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN------NG--QILLNEVAPRPHNSGH 156 (438)
Q Consensus 102 ------P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~------~g--~~~viEiNpR~~~~~~ 156 (438)
+..+++.+.....++|.++++++|+. ++.||++..+ .. ...|||+|.+|+-..|
T Consensus 664 lstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 664 ISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred cCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 12356778888999999999999874 7779998753 01 4678999999984433
No 86
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.10 E-value=1.3e-10 Score=109.54 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=90.7
Q ss_pred HHHHHhhCCcEEEEecCCCC----CCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCce--eEEEEEEEecCCeE
Q 013695 10 WRAGKQFGYPLMVKSKRLAY----DGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVK--ELAVIVVRGRDKSI 81 (438)
Q Consensus 10 ~~~~~~igyPvVvKP~~~g~----~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~--E~sv~~~~~~~G~~ 81 (438)
...+.++-||+|+||.-+++ +-...+.+.|.+|+..++.++. .++++++|||||+|+- .++.-++.+.+..+
T Consensus 140 d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pv 219 (415)
T COG3919 140 DTLVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPV 219 (415)
T ss_pred hhhhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCch
Confidence 33456889999999954331 0124667889999998887764 4568899999999854 45555554433222
Q ss_pred EEEeeeee-EEe--cCeee-EEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEEcCCCCC
Q 013695 82 LCYPVVET-IHK--ENICH-IVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-NGQILLNEVAPRPHN 153 (438)
Q Consensus 82 ~~~~~~e~-~~~--~g~~~-~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~viEiNpR~~~ 153 (438)
..+..... .+. -|... .+..| + .+++.+.++++++.+++.|+.++||++|+ ||...++|||||++.
T Consensus 220 aeftarr~rqyPvdfgytst~vevv----D--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~ 290 (415)
T COG3919 220 AEFTARRLRQYPVDFGYTSTVVEVV----D--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWR 290 (415)
T ss_pred hhhhcchhhcCCcccccccEEEEec----C--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcc
Confidence 11110000 010 12111 11122 2 34678889999999999999999999996 788999999999973
No 87
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=105.22 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=82.4
Q ss_pred EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeee-EEecC-eee
Q 013695 20 LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVET-IHKEN-ICH 97 (438)
Q Consensus 20 vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~-~~~~g-~~~ 97 (438)
.|+||. +|++|.|+.+..+..++ .|+||||+| .++||... ++. ++......+. +...+ ...
T Consensus 141 ~ViKp~-dgCgge~i~~~~~~pd~-------------~i~qEfIeG-~~lSVSL~-~GE-kv~pLsvNrQfi~~~~~~~~ 203 (307)
T COG1821 141 YVIKPA-DGCGGEGILFGRDFPDI-------------EIAQEFIEG-EHLSVSLS-VGE-KVLPLSVNRQFIIFAGSELV 203 (307)
T ss_pred EEeccc-ccCCcceeeccCCCcch-------------hhHHHhcCC-cceEEEEe-cCC-ccccceechhhhhhccceee
Confidence 799996 46799999887765553 799999998 89999843 333 3333333221 11111 112
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHcC-ceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 98 IVKAPAAVPWKISELATDVAHKAVSSLE-GAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 98 ~~~~P~~l~~~~~~~i~~~a~~i~~~lg-~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
+.-.+.+++.++.+++.+.|.+.++-++ ++|.++||+.+. +++|++|||||+.
T Consensus 204 y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D~pYvIEINpR~T 257 (307)
T COG1821 204 YNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--DEPYVIEINPRPT 257 (307)
T ss_pred eccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec--CCcEEEEecCCCC
Confidence 2234666788999999999999999995 889999999985 5699999999996
No 88
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.07 E-value=1.7e-09 Score=106.82 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=86.7
Q ss_pred HHHHhhCCcEEEEecCC--CCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CceeEEEEEEEecCCeEE-EEee
Q 013695 11 RAGKQFGYPLMVKSKRL--AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSIL-CYPV 86 (438)
Q Consensus 11 ~~~~~igyPvVvKP~~~--g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~~~~G~~~-~~~~ 86 (438)
....++|||+|+||..+ .+.|++|.++.++++|.. + ..+ +++||||+ +++-+-|.++.+ ++. .+..
T Consensus 146 ~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~----l-~~p--~~lQEfVnh~g~d~RVfVvGd---~v~~~~R~ 215 (328)
T PLN02941 146 VALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK----L-EPP--LVLQEFVNHGGVLFKVYVVGD---YVKCVRRF 215 (328)
T ss_pred HHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh----c-CCc--EEEEEecCCCCEEEEEEEECC---EEEEEEec
Confidence 33468999999999763 257999999999988876 2 334 99999996 358888888753 321 1111
Q ss_pred ee-eEE---e---cCee--------------eE--EEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC--Cc
Q 013695 87 VE-TIH---K---ENIC--------------HI--VKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN--GQ 141 (438)
Q Consensus 87 ~e-~~~---~---~g~~--------------~~--~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~--g~ 141 (438)
.. ++. . .|.. .. ..-|........+++.+++.++.++||. ++|++|++.+.+ ++
T Consensus 216 S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~ 294 (328)
T PLN02941 216 SLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDR 294 (328)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCc
Confidence 11 111 0 0100 00 0001111112234689999999999997 899999998853 46
Q ss_pred EEEEEEcCCCCC
Q 013695 142 ILLNEVAPRPHN 153 (438)
Q Consensus 142 ~~viEiNpR~~~ 153 (438)
++|+|||.-|+=
T Consensus 295 ~~VidVN~fP~~ 306 (328)
T PLN02941 295 YYVIDINYFPGY 306 (328)
T ss_pred eEEEEecCCCcc
Confidence 899999999973
No 89
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.96 E-value=5e-09 Score=91.27 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=91.7
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhc-CCeEEEEEcC---CCCCchhhhhc
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAG---GAAHLPGMVAA 345 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ag---~~~~l~~~i~~ 345 (438)
+| +++.+++||+.+.+.++.|.++ ||++.+| .+ |.+|+ ++. |++|..+..| +.+++.++|..
T Consensus 6 ~v-~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT----~g----Ta~~L---~~~~Gi~v~~vi~~~~gg~~~i~~~I~~ 73 (142)
T PRK05234 6 RI-ALIAHDHKKDDLVAWVKAHKDLLEQHELYAT----GT----TGGLI---QEATGLDVTRLLSGPLGGDQQIGALIAE 73 (142)
T ss_pred EE-EEEEeccchHHHHHHHHHHHHHhcCCEEEEe----Ch----HHHHH---HhccCCeeEEEEcCCCCCchhHHHHHHc
Confidence 45 8888999999999999999999 9999999 77 99999 566 9998776665 77899999999
Q ss_pred CCCCCEEEec--CC-CC-CCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHH
Q 013695 346 RTPLPVIGVP--VR-AS-ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARM 409 (438)
Q Consensus 346 ~~~~pVI~~p--~~-~~-~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~ 409 (438)
.....|||+| .+ .. ..||.. +|+.++-.||||+|-- .+|...++.+.. |..+++-.
T Consensus 74 g~i~lVInt~dp~~~~~~~~D~~~--IRR~Av~~~IP~~T~l-----~tA~a~~~al~~-~~~~~~~~ 133 (142)
T PRK05234 74 GKIDMLIFFRDPLTAQPHDPDVKA--LLRLADVWNIPVATNR-----ATADFLISSLLF-DDEVEILI 133 (142)
T ss_pred CceeEEEEecCCCCCCcccchHHH--HHHHHHHcCCCEEcCH-----HHHHHHHHHHhc-ccchhhcc
Confidence 9999999999 42 22 345665 9999999999999521 334444444444 55554433
No 90
>PRK12458 glutathione synthetase; Provisional
Probab=98.95 E-value=1.2e-08 Score=102.02 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHhhCCc-EEEEecCCCCCCcCcEEeCCHHH--HHHHHHHhcCCCCcEEEeeccCCc--eeEEEEEEEecC
Q 013695 4 NDLESAWRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEE--LSSAITALGGFDRGLYVEKWAPFV--KELAVIVVRGRD 78 (438)
Q Consensus 4 ~s~ee~~~~~~~igyP-vVvKP~~~g~~g~Gv~iv~~~ee--l~~~~~~~~~~~~~~lvEe~I~g~--~E~sv~~~~~~~ 78 (438)
.+.+++.+++++.++| +|+||.. |++|+|++++++.++ +...++.+.. .+.+|+|+||++. .++.+.++ +
T Consensus 148 ~~~~~~~~~~~~~~~~pvVvKPl~-G~gG~gV~~v~~~~~~~~~~ile~~~~-~~~~ivQeyI~~~~~gDiRv~vv---~ 222 (338)
T PRK12458 148 RNKEYIREFLEESPGDKMILKPLQ-GSGGQGVFLIEKSAQSNLNQILEFYSG-DGYVIAQEYLPGAEEGDVRILLL---N 222 (338)
T ss_pred CCHHHHHHHHHHcCCCeEEEEECC-CCCccCeEEEecCChhhHHHHHHHHhh-CCCEEEEEcccCCCCCCEEEEEE---C
Confidence 5678999999999775 9999965 569999999987664 5555544432 2359999999863 45666544 4
Q ss_pred CeEE----EEeeeeeEEecCee------eEEEcCCCCCHHHHHHHHHHHHHHHHHc---CceeEEEEEEEEeCCCcEEEE
Q 013695 79 KSIL----CYPVVETIHKENIC------HIVKAPAAVPWKISELATDVAHKAVSSL---EGAGIFAVELFWTNNGQILLN 145 (438)
Q Consensus 79 G~~~----~~~~~e~~~~~g~~------~~~~~P~~l~~~~~~~i~~~a~~i~~~l---g~~G~~~ve~~~~~~g~~~vi 145 (438)
|++. .++........++. .....+..++++ .+++|.++...| |+ .++.||++ | .+++
T Consensus 223 g~~v~~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l~ 292 (338)
T PRK12458 223 GEPLERDGHYAAMRRVPAGGDVRSNVHAGGSVVKHTLTKE----ELELCEAIRPKLVRDGL-FFVGLDIV----G-DKLV 292 (338)
T ss_pred CEEEeeccceeEEEEecCCCCeeecccCCCcccCcCCCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE----C-CEEE
Confidence 5655 11111111111110 112345566665 455666665555 43 47788986 2 2689
Q ss_pred EEcCCCCCCCCcc-eeeccCcHHHHHHHH
Q 013695 146 EVAPRPHNSGHHT-IESCYTSQFEQHMRA 173 (438)
Q Consensus 146 EiNpR~~~~~~~~-~~~~~~~~~~~~l~~ 173 (438)
|||++.. +|... ...+++|.-...+..
T Consensus 293 EIN~~sp-~g~~~~~~~~g~d~a~~i~~~ 320 (338)
T PRK12458 293 EVNVFSP-GGLTRINKLNKIDFVEDIIEA 320 (338)
T ss_pred EEeCCCc-chHHHHHHHhCCCHHHHHHHH
Confidence 9999843 12221 223456655444443
No 91
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=98.87 E-value=1e-08 Score=85.90 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=82.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC---CCCCchhhhhc-CCCCC
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG---GAAHLPGMVAA-RTPLP 350 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag---~~~~l~~~i~~-~~~~p 350 (438)
+++.+++|++.+.+.++.|..+||++++| .+ |.+|| ++.|++|..+.++ +.+++.++|.. .....
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idl 71 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLFAT----GG----TSRVL---ADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDV 71 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEEEC----cH----HHHHH---HHcCCceEEEEecCCCCCcHHHHHHhCCCCEEE
Confidence 77889999999999999999999999999 77 99999 4579998888773 67899999999 99999
Q ss_pred EEEecCCC----CCCCChhhHHHhhcCCCCCceEE
Q 013695 351 VIGVPVRA----SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 351 VI~~p~~~----~~~~g~~~l~s~~~~~~gip~~t 381 (438)
|||+|.+. ...+|+. +|+.+.-.||||.|
T Consensus 72 VIn~~~~~~~~~~~~dg~~--iRR~A~~~~Ip~~T 104 (112)
T cd00532 72 VINLRDPRRDRCTDEDGTA--LLRLARLYKIPVTT 104 (112)
T ss_pred EEEcCCCCcccccCCChHH--HHHHHHHcCCCEEE
Confidence 99999742 3566776 99999999999996
No 92
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.84 E-value=7.3e-09 Score=87.17 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=80.2
Q ss_pred EEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE-E--cCCCCCchhhhhcCCCCC
Q 013695 276 IMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA-G--AGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~-~--ag~~~~l~~~i~~~~~~p 350 (438)
+..+++|++.+.+.++.|.++ ||++++| .+ |.+|+++ ..|++|..+ + .|+++++.++|.......
T Consensus 4 l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT----~g----Ta~~L~~--~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~ 73 (115)
T cd01422 4 LIAHDNKKEDLVEFVKQHQELLSRHRLVAT----GT----TGLLIQE--ATGLTVNRMKSGPLGGDQQIGALIAEGEIDA 73 (115)
T ss_pred EEecccchHHHHHHHHHHHHHhcCCEEEEe----ch----HHHHHHH--hhCCcEEEEecCCCCchhHHHHHHHcCceeE
Confidence 445899999999999999999 9999999 78 9999943 168987766 2 477889999999999999
Q ss_pred EEEecCC-C--C-CCCChhhHHHhhcCCCCCceEE
Q 013695 351 VIGVPVR-A--S-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 351 VI~~p~~-~--~-~~~g~~~l~s~~~~~~gip~~t 381 (438)
|||+|.+ + . ..||+. +|+.++..+|||.|
T Consensus 74 VInt~~~~~~~~~~~dg~~--iRr~a~~~~Ip~~T 106 (115)
T cd01422 74 VIFFRDPLTAQPHEPDVKA--LLRLCDVYNIPLAT 106 (115)
T ss_pred EEEcCCCCCCCcccccHHH--HHHHHHHcCCCEEE
Confidence 9999974 2 2 557877 99999999999995
No 93
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.83 E-value=1.6e-07 Score=92.34 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 108 KISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 108 ~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
...+++.+++.++.+++|+ |.+.+|++++.++.++|+|+|++|+
T Consensus 228 p~~~el~~la~~A~~~~g~-~~~GvDii~~~~~g~~VlEVN~~Pg 271 (317)
T TIGR02291 228 PHWERLLELAASCWELTGL-GYMGVDMVLDKEEGPLVLELNARPG 271 (317)
T ss_pred hhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCCCEEEEEeCCCCC
Confidence 4567899999999999997 9999999998777799999999997
No 94
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.83 E-value=2.5e-07 Score=89.27 Aligned_cols=147 Identities=22% Similarity=0.304 Sum_probs=96.8
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEe----------------------CCHHHHHHHHHHhcCCCCcEEEe
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVA----------------------KSEEELSSAITALGGFDRGLYVE 60 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv----------------------~~~eel~~~~~~~~~~~~~~lvE 60 (438)
+++.+++.+++++.+ -++|||.. |+.|+|+..+ .+.+++...+..... ...+|||
T Consensus 42 ~~~~~~l~~~L~~y~-~vylKP~~-Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~yIiQ 118 (262)
T PF14398_consen 42 LTSFEDLREMLNKYK-SVYLKPDN-GSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLG-KRRYIIQ 118 (262)
T ss_pred cCCHHHHHHHHHHCC-EEEEEeCC-CCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcC-CCcEEEe
Confidence 467789999998765 59999976 5589987654 334566666655443 2459999
Q ss_pred eccCC----ce--eEEEEEEEecCCeEEEEeeeeeEEecCeee------EEEcCCC--C-----CHHHHHHHHHHHHHHH
Q 013695 61 KWAPF----VK--ELAVIVVRGRDKSILCYPVVETIHKENICH------IVKAPAA--V-----PWKISELATDVAHKAV 121 (438)
Q Consensus 61 e~I~g----~~--E~sv~~~~~~~G~~~~~~~~e~~~~~g~~~------~~~~P~~--l-----~~~~~~~i~~~a~~i~ 121 (438)
+.|+- ++ .+.|.+-.+.+|++.+.++.-.+-..+... +...|.. + .....++|.+++..++
T Consensus 119 q~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia 198 (262)
T PF14398_consen 119 QGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIA 198 (262)
T ss_pred CCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99972 24 455555667777765544432221111100 1111111 1 2346667777777777
Q ss_pred HHc----Cc-eeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 122 SSL----EG-AGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 122 ~~l----g~-~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
+.| +. .|-+++|+.+|.+|.+|++|+|.+|+
T Consensus 199 ~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~kP~ 234 (262)
T PF14398_consen 199 QALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSKPG 234 (262)
T ss_pred HHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCCCC
Confidence 765 65 58999999999999999999999997
No 95
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.75 E-value=4.7e-08 Score=81.61 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=81.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEE
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVI 352 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI 352 (438)
+++.+++|++.+.+.++.|.++||++++| -+ |.+|+ +++|++|..+.. ++.+++.++|.......||
T Consensus 4 l~s~~~~~k~~~~~~~~~l~~~G~~l~aT----~g----T~~~l---~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 4 FISVADRDKPEAVEIAKRLAELGFKLVAT----EG----TAKYL---QEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred EEEEEcCcHhHHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHcCCeEEEEeecCCCchhHHHHHHcCCeEEEE
Confidence 88889999999999999999999999999 66 99999 557999777655 6778999999999999999
Q ss_pred EecCCC-CCCCChhhHHHhhcCCCCCceEE
Q 013695 353 GVPVRA-SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 353 ~~p~~~-~~~~g~~~l~s~~~~~~gip~~t 381 (438)
|+|... ..-+|+. +|+.++..||||.|
T Consensus 73 n~~~~~~~~~~~~~--iRR~Av~~~ipl~T 100 (110)
T cd01424 73 NTPSGKRAIRDGFS--IRRAALEYKVPYFT 100 (110)
T ss_pred ECCCCCccCccHHH--HHHHHHHhCCCEEe
Confidence 999642 2335665 99999999999996
No 96
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=98.64 E-value=7.2e-08 Score=81.31 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=80.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc--C----CCCCchhhhhcCCC
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA--G----GAAHLPGMVAARTP 348 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a--g----~~~~l~~~i~~~~~ 348 (438)
+++.++.|++.+.+.++.|.++||++++| ++ |.+|+ ++.|++|..+.. + ..+++.++|.....
T Consensus 4 lisv~~~dk~~~~~~a~~l~~~G~~i~aT----~g----Ta~~L---~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 4 LISIGSYSKPELLPTAQKLSKLGYKLYAT----EG----TADFL---LENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEecCcccchhHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 77888889999999999999999999999 88 99999 567998877744 2 23789999999999
Q ss_pred CCEEEecCCCC---CCCChhhHHHhhcCCCCCceEE
Q 013695 349 LPVIGVPVRAS---ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 349 ~pVI~~p~~~~---~~~g~~~l~s~~~~~~gip~~t 381 (438)
..|||+|..+. ..+|+. +|+.++..||||.|
T Consensus 73 dlVIn~~~~~~~~~~~~~~~--iRr~Av~~~ip~iT 106 (116)
T cd01423 73 DLVINLPSNRGKRVLDNDYV--MRRAADDFAVPLIT 106 (116)
T ss_pred eEEEECCCCCCCccccCcEe--eehhhHhhCCcccc
Confidence 99999997533 346777 99999999999985
No 97
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.63 E-value=1.1e-06 Score=87.00 Aligned_cols=153 Identities=10% Similarity=0.081 Sum_probs=88.8
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCH-HHHHHHHHHhcC-CCCcEEEeeccCC--ceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSE-EELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~-eel~~~~~~~~~-~~~~~lvEe~I~g--~~E~sv~~~~~~~ 78 (438)
..+.+++.+++++.| |+|+||.. |++|+|++++++. .++...++.+.. ....+++|+||+. ..++.+.++ +
T Consensus 140 ~~~~~~~~~~~~~~g-~vVvKPl~-G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv---~ 214 (312)
T TIGR01380 140 TRDKAEIRAFLAEHG-DIVLKPLD-GMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLI---D 214 (312)
T ss_pred eCCHHHHHHHHHHcC-CEEEEECC-CCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEE---C
Confidence 357889999999998 99999976 4599999998753 333332222211 1234999999984 368888776 3
Q ss_pred CeEEEEeee----e-eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHH---HHcCceeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 79 KSILCYPVV----E-TIHKENICHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 79 G~~~~~~~~----e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~---~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
|+++.+... + .+..+-.......|..++++. ++++.+++ +.+|+ ....||++ | .||+|+|+.
T Consensus 215 g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~l~~e~----~~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~ 284 (312)
T TIGR01380 215 GEPIGAAVARIPAGGEFRGNLAVGGRGEATELSERD----REICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVT 284 (312)
T ss_pred CeEEEEEEEecCCCCCccccccCCceeeccCCCHHH----HHHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecC
Confidence 565332221 1 111110011234566677753 34444444 55554 56778977 3 479999987
Q ss_pred CCCCCCcce-eeccCcHHHHHH
Q 013695 151 PHNSGHHTI-ESCYTSQFEQHM 171 (438)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~l 171 (438)
-. ++...+ ..++.+.-...+
T Consensus 285 ~p-~~~~~~~~~~g~~ia~~i~ 305 (312)
T TIGR01380 285 SP-TGIREIDRQKGVNIAGMLW 305 (312)
T ss_pred Cc-chHHHHHhhhCCCHHHHHH
Confidence 21 122222 234566554444
No 98
>PRK05246 glutathione synthetase; Provisional
Probab=98.62 E-value=8.1e-07 Score=88.20 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=89.7
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCC-HHHHHHHHHHhcC-CCCcEEEeeccCC--ceeEEEEEEEecC
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKS-EEELSSAITALGG-FDRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~-~eel~~~~~~~~~-~~~~~lvEe~I~g--~~E~sv~~~~~~~ 78 (438)
..+.+++.+++++.| |+|+||.. |++|+|++++.+ ..++...++.+.. ....+++|+||+. ..++.+.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-~vVlKP~~-G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv---~ 215 (316)
T PRK05246 141 TRDKAEIRAFRAEHG-DIILKPLD-GMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLV---D 215 (316)
T ss_pred eCCHHHHHHHHHHCC-CEEEEECC-CCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEE---C
Confidence 457889999999998 99999976 459999999954 4444333333221 1235999999975 357777766 3
Q ss_pred CeEEEEeeee----eEEecCe-eeEEEcCCCCCHHHHHHHHHHHHHHH---HHcCceeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 79 KSILCYPVVE----TIHKENI-CHIVKAPAAVPWKISELATDVAHKAV---SSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 79 G~~~~~~~~e----~~~~~g~-~~~~~~P~~l~~~~~~~i~~~a~~i~---~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
|++..+.... .-.+.+. ..+...|..++++ .++++.+++ +.+|+ ..+.||++ |. ||+|||..
T Consensus 216 g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~gl-~~~GVDli----~~-~l~EvN~~ 285 (316)
T PRK05246 216 GEPVGYALARIPAGGETRGNLAAGGRGEATPLTER----DREICAAIGPELKERGL-IFVGIDVI----GD-YLTEINVT 285 (316)
T ss_pred CEEhhheeEecCCCCCcccCccCCceEeccCCCHH----HHHHHHHHHHHHHHhCC-CEEEEEEe----CC-EEEEEeCC
Confidence 5543311110 0011111 1123456667764 344555555 44443 47788987 22 79999986
Q ss_pred -CCCCCCcc-eeeccCcHHHHHHHH
Q 013695 151 -PHNSGHHT-IESCYTSQFEQHMRA 173 (438)
Q Consensus 151 -~~~~~~~~-~~~~~~~~~~~~l~~ 173 (438)
|+ +... ...+|+|.-...+..
T Consensus 286 ~p~--~~~~~~~~tg~~ia~~i~~~ 308 (316)
T PRK05246 286 SPT--GIREIERLTGVDIAGMLWDA 308 (316)
T ss_pred Cch--HHHHHHHHhCCCHHHHHHHH
Confidence 43 2222 223466655544444
No 99
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.54 E-value=1.3e-06 Score=89.16 Aligned_cols=83 Identities=27% Similarity=0.292 Sum_probs=64.0
Q ss_pred ccCHHHHHHHHHhhC-CcEEEEecC--CCCCC-cCcEEeCCHHHHHHHHHHhcCC-------C------CcEEEeeccCC
Q 013695 3 VNDLESAWRAGKQFG-YPLMVKSKR--LAYDG-RGNAVAKSEEELSSAITALGGF-------D------RGLYVEKWAPF 65 (438)
Q Consensus 3 v~s~ee~~~~~~~ig-yPvVvKP~~--~g~~g-~Gv~iv~~~eel~~~~~~~~~~-------~------~~~lvEe~I~g 65 (438)
++|.+|+.++++++| ||+|+||.. ++.++ -||.+++|++|+.++++++.+. + ..++||+|+++
T Consensus 25 ~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~ 104 (386)
T TIGR01016 25 ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDI 104 (386)
T ss_pred eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccC
Confidence 578999999999999 999999973 23222 3899999999999999776531 0 36999999996
Q ss_pred ceeEEEEEEEecC--CeEEEEe
Q 013695 66 VKELAVIVVRGRD--KSILCYP 85 (438)
Q Consensus 66 ~~E~sv~~~~~~~--G~~~~~~ 85 (438)
++|+.+-++.|.. |-++.++
T Consensus 105 g~E~~v~i~~d~~~~~pvi~~~ 126 (386)
T TIGR01016 105 DKEYYLSIVIDRSARCPVIMAS 126 (386)
T ss_pred CceEEEEEEEcCCCCceEEEEE
Confidence 6999999888753 3344444
No 100
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.45 E-value=5.4e-06 Score=79.60 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=98.4
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC-------CCcEEEeeccCCceeEEEEEEEe-cCCeEEEEee
Q 013695 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-------DRGLYVEKWAPFVKELAVIVVRG-RDKSILCYPV 86 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~-------~~~~lvEe~I~g~~E~sv~~~~~-~~G~~~~~~~ 86 (438)
++.-|+|||.. ++-+|||-+++.|++|+.+..+++... -....|||||-| ..+....+.+ -.+++-.+++
T Consensus 148 eIdr~VIVK~p-gAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~ 225 (361)
T COG1759 148 EIDRPVIVKLP-GAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGI 225 (361)
T ss_pred HcCCceEEecC-CccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeee
Confidence 45569999995 455799999999999999988876431 145899999998 5555554322 2234444444
Q ss_pred eeeEEec--Ce--------------eeEEE---cCCCCCHHHHHHHHHHHHHHHHHc------CceeEEEEEEEEeCCCc
Q 013695 87 VETIHKE--NI--------------CHIVK---APAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 87 ~e~~~~~--g~--------------~~~~~---~P~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~ 141 (438)
...++.+ |. ..+++ .|..+-+.++.++-+++.+++++- |..|+|.+|.++|+|=+
T Consensus 226 D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~ 305 (361)
T COG1759 226 DRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLE 305 (361)
T ss_pred eheeeccchhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCcc
Confidence 3222221 11 11221 366678888888999888888764 77899999999999888
Q ss_pred EEEEEEcCCCCCCCC
Q 013695 142 ILLNEVAPRPHNSGH 156 (438)
Q Consensus 142 ~~viEiNpR~~~~~~ 156 (438)
+||.|+.+|.+++..
T Consensus 306 ~vVfevS~Ri~gGTN 320 (361)
T COG1759 306 FVVFEVSARIVGGTN 320 (361)
T ss_pred EEEEEEeccccCCcc
Confidence 999999999975433
No 101
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.39 E-value=1.2e-05 Score=82.21 Aligned_cols=81 Identities=27% Similarity=0.312 Sum_probs=65.1
Q ss_pred cccCHHHHHHHHHhh-CCcEEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcCC---------C----CcEEEeecc
Q 013695 2 EVNDLESAWRAGKQF-GYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF---------D----RGLYVEKWA 63 (438)
Q Consensus 2 ~v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~~---------~----~~~lvEe~I 63 (438)
.++|.+|+.++++++ |||+|+||... .+|+ ||.+.+|++|+.++++++... . ..++||+++
T Consensus 24 ~~~~~~ea~~~a~~i~g~PvVvK~~~~-~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~ 102 (388)
T PRK00696 24 VATTPEEAVEAAEELGGGVWVVKAQVH-AGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGA 102 (388)
T ss_pred eeCCHHHHHHHHHHcCCCcEEEEEeeC-CCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEecc
Confidence 368899999999999 99999999643 2344 999999999999999877521 1 259999999
Q ss_pred CCceeEEEEEEEecC-CeEEE
Q 013695 64 PFVKELAVIVVRGRD-KSILC 83 (438)
Q Consensus 64 ~g~~E~sv~~~~~~~-G~~~~ 83 (438)
+++.|+.+.+.+|.. |.++.
T Consensus 103 ~~~~E~~vg~~~D~~fgpvv~ 123 (388)
T PRK00696 103 DIAKEYYLSIVLDRATRRVVF 123 (388)
T ss_pred CCCceEEEEEEEcCCCCceEE
Confidence 977999999998764 55543
No 102
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.34 E-value=4.1e-06 Score=75.41 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=71.1
Q ss_pred cCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCH-HHHHHHHHHhcC-CCCcEEEeeccCCc--eeEEEEEEEecCC
Q 013695 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSE-EELSSAITALGG-FDRGLYVEKWAPFV--KELAVIVVRGRDK 79 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~-eel~~~~~~~~~-~~~~~lvEe~I~g~--~E~sv~~~~~~~G 79 (438)
.+.+++.+|.++.+. +|+||.. |+||+||+++... ..+...++.+.. ....+++|+|++.- -|.++.++ +|
T Consensus 19 ~~~~~i~~f~~~~~~-~VlKPl~-g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GDkRii~~---nG 93 (173)
T PF02955_consen 19 RDKEEIRAFIEEHGD-IVLKPLD-GMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGDKRIILF---NG 93 (173)
T ss_dssp S-HHHHHHHHHHHSS-EEEEESS---TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEE---TT
T ss_pred CCHHHHHHHHHHCCC-EEEEECC-CCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCCEEEEEE---CC
Confidence 478999999999999 9999965 5699999999874 456666665542 23459999999852 36777665 45
Q ss_pred eEE----EEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCcee--EEEEEEEEeCCCcEEEEEEcCCC
Q 013695 80 SIL----CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAG--IFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 80 ~~~----~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G--~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
+.. ..|....+..+-.......+..++++. +++|+++...|.-.| +..+|++ .+ |+.|||.--
T Consensus 94 ~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e----~~i~~~i~~~L~~~Gl~f~GiDvi---g~--~l~EiNvts 162 (173)
T PF02955_consen 94 EPSHAVRRIPAKGDFRSNLAAGGSAEPAELTERE----REICEQIGPKLREDGLLFVGIDVI---GD--KLTEINVTS 162 (173)
T ss_dssp EE-SEEEEE--SS-S---GGGTSCEEEEE--HHH----HHHHHHHHHHHHHTT--EEEEEEE---TT--EEEEEE-SS
T ss_pred EEhHHeecCCCCCCceeeeccCCceeecCCCHHH----HHHHHHHHHHHhhcCcEEEEEecc---cc--ceEEEeccC
Confidence 542 222211111110000112234455543 445555555553345 4456755 23 899999864
No 103
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.29 E-value=3.8e-05 Score=75.07 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=89.9
Q ss_pred ccCHHHHHHHHHhh-CCcEEEEecCCCCCCcCcEEeCCHH------HHHHHHHHhcC-CCCcEEEeeccCCce-------
Q 013695 3 VNDLESAWRAGKQF-GYPLMVKSKRLAYDGRGNAVAKSEE------ELSSAITALGG-FDRGLYVEKWAPFVK------- 67 (438)
Q Consensus 3 v~s~ee~~~~~~~i-gyPvVvKP~~~g~~g~Gv~iv~~~e------el~~~~~~~~~-~~~~~lvEe~I~g~~------- 67 (438)
..+.+++.+++... ..++++||+. |++|+|+.++...+ +.......+.. ....+||||+|.-..
T Consensus 58 ~~~~~~l~~~l~~~~~~~~viKP~~-G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~ 136 (285)
T PF14397_consen 58 QHSIEDLEEFLRKHAPDRFVIKPAN-GSGGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSP 136 (285)
T ss_pred ccCHHHHHHHHHhccCCcEEEEeCC-CCCccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCC
Confidence 35778999999764 6899999975 56999999987665 12222222211 101599999997422
Q ss_pred ----eEEEEEEEecCCeEEEEeee----------eeEEecCe----------ee----------EEEcCCC---C---CH
Q 013695 68 ----ELAVIVVRGRDKSILCYPVV----------ETIHKENI----------CH----------IVKAPAA---V---PW 107 (438)
Q Consensus 68 ----E~sv~~~~~~~G~~~~~~~~----------e~~~~~g~----------~~----------~~~~P~~---l---~~ 107 (438)
.+.+..+.+. |++.+.... ++....|. .. ....|.. + .=
T Consensus 137 ~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~I 215 (285)
T PF14397_consen 137 SSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQI 215 (285)
T ss_pred CCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccC
Confidence 3445555554 444322111 11111110 00 0111221 1 11
Q ss_pred HHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCC
Q 013695 108 KISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 108 ~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
.-.+++.+.+.++.+.+...+.+..|+.+|++| +.++|.|.+.
T Consensus 216 P~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~llE~N~~~ 258 (285)
T PF14397_consen 216 PNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLLEGNARW 258 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEEEeeCCC
Confidence 234678889999988887778889999999999 9999999993
No 104
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=98.01 E-value=9e-06 Score=65.25 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEE-EEEc--CCCCCchhhhhcCCCCCEEEecCC-C--C
Q 013695 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEII-IAGA--GGAAHLPGMVAARTPLPVIGVPVR-A--S 359 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~-i~~a--g~~~~l~~~i~~~~~~pVI~~p~~-~--~ 359 (438)
+.+.++.|.++||++++| -+ |++|+ ++.|++|. .+.+ ++..++.+++.......|||+|.+ . .
T Consensus 2 ~~~~~~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~ 70 (90)
T smart00851 2 LVELAKRLAELGFELVAT----GG----TAKFL---REAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQP 70 (90)
T ss_pred HHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCccee
Confidence 457889999999999999 67 89999 56799874 4433 556679999999999999999974 2 2
Q ss_pred CCCChhhHHHhhcCCCCCceEE
Q 013695 360 ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 360 ~~~g~~~l~s~~~~~~gip~~t 381 (438)
..||.. +|+.++-.||||.|
T Consensus 71 ~~d~~~--iRr~A~~~~Ip~~T 90 (90)
T smart00851 71 HEDGKA--LRRAAENIDIPGAT 90 (90)
T ss_pred ccCcHH--HHHHHHHcCCCeeC
Confidence 345766 99999999999975
No 105
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=97.96 E-value=1.7e-06 Score=70.27 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc----CCCCC----chhhhhcCCCCCEEEecCC
Q 013695 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAH----LPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~----l~~~i~~~~~~pVI~~p~~ 357 (438)
+.+.++.|.++||++.+| .+ |++|+ ++.|++|.-++. |...+ +.++|.......|||+|.+
T Consensus 2 ~~~~a~~l~~lG~~i~AT----~g----Ta~~L---~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~ 70 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYAT----EG----TAKFL---KEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP 70 (95)
T ss_dssp HHHHHHHHHHTTSEEEEE----HH----HHHHH---HHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T
T ss_pred HHHHHHHHHHCCCEEEEC----hH----HHHHH---HHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC
Confidence 578899999999999999 77 99999 567999444333 33446 9999999999999999986
Q ss_pred C--CCC-CChhhHHHhhcCCCCCceEE
Q 013695 358 A--SAL-DGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 358 ~--~~~-~g~~~l~s~~~~~~gip~~t 381 (438)
. ... ||+. +|+++...+|||.|
T Consensus 71 ~~~~~~~dg~~--irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 71 FSDQEHTDGYK--IRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHTHHHHH--HHHHHHHTTSHEEC
T ss_pred CcccccCCcHH--HHHHHHHcCCCCcC
Confidence 2 223 6777 99999999999986
No 106
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.82 E-value=7.9e-05 Score=72.97 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred HhhCCcEEEEecC--CCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CceeEEEEEEEecCCeEEEEeeeeeE
Q 013695 14 KQFGYPLMVKSKR--LAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSILCYPVVETI 90 (438)
Q Consensus 14 ~~igyPvVvKP~~--~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~~~~G~~~~~~~~e~~ 90 (438)
..+.||+|+||.. |+..+..|.++.+++.|.+. ..| +++||||+ |+.=|-|.++.+.- .++.-+..-++
T Consensus 135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-----~~P--~VlQeFVNHggvLfKVyVvGd~v-~~v~R~SLpn~ 206 (307)
T PF05770_consen 135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-----KPP--CVLQEFVNHGGVLFKVYVVGDKV-FVVKRPSLPNV 206 (307)
T ss_dssp TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------SS--EEEEE----TTEEEEEEEETTEE-EEEEEE-----
T ss_pred CCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-----CCC--EEEEEeecCCCEEEEEEEecCEE-EEEECCCCCCC
Confidence 4678999999965 43477899999999998752 345 99999998 35667777663211 11111211121
Q ss_pred Eec------Ceee------------E-EEc--CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-C-CcEEEEEE
Q 013695 91 HKE------NICH------------I-VKA--PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN-N-GQILLNEV 147 (438)
Q Consensus 91 ~~~------g~~~------------~-~~~--P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~-~-g~~~viEi 147 (438)
... +... . ... +......-.+.+++++..+-++||+ -.|++|++++. . |++||++|
T Consensus 207 ~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 207 SSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp -SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEe
Confidence 110 0000 0 000 1111111234678888888888887 68999999864 3 57999999
Q ss_pred cCCCC
Q 013695 148 APRPH 152 (438)
Q Consensus 148 NpR~~ 152 (438)
|.-||
T Consensus 286 NyFPg 290 (307)
T PF05770_consen 286 NYFPG 290 (307)
T ss_dssp EES--
T ss_pred ccCCC
Confidence 99997
No 107
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.65 E-value=0.0005 Score=62.09 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=74.3
Q ss_pred hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEee---eeeEEe
Q 013695 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV---VETIHK 92 (438)
Q Consensus 16 igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~---~e~~~~ 92 (438)
..||+|||--. +.+|.|-.+++|..++.+...-+......+-+|.||+-.+++.+.-+. + ++..|-. +.++..
T Consensus 49 ~~fPvVvKvG~-~h~G~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfId~kyDirvqkIG--~-~ykA~~R~sis~nWK~ 124 (203)
T PF02750_consen 49 PRFPVVVKVGH-AHAGMGKVKVDNQQDFQDIASLLAITKDYATTEPFIDAKYDIRVQKIG--N-NYKAYMRTSISGNWKA 124 (203)
T ss_dssp SSSSEEEEESS--STTTTEEEE-SHHHHHHHHHHHHHHTS-EEEEE---EEEEEEEEEET--T-EEEEEEEEESSSTSST
T ss_pred CCCCEEEEEcc-ccCceeEEEEccHHHHHHHHHHHHhcCceEEeeccccceeEEEEEEEc--C-eEEEEEEccccccccc
Confidence 47999999843 457899999999998886655443223558999999854566665552 2 4444432 122222
Q ss_pred c-CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 93 E-NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 93 ~-g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
+ |.....-.+ +++ +-+..+..+.+.+|.--++.+|.+..+||+-|++|+|--
T Consensus 125 N~gsa~lEqi~--~~~----ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 125 NTGSAMLEQIA--MTE----RYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp TSSSEEEEEE-----H----HHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred cccchheeecC--CCh----HHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 2 222222122 333 455667777777876689999999999999999999976
No 108
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.54 E-value=0.00071 Score=66.31 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=23.5
Q ss_pred cEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013695 19 PLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (438)
Q Consensus 19 PvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~ 64 (438)
-+|+||..+ +.|+|+.++++.+++.+. .....+.++||+||+
T Consensus 67 ~wI~KP~~~-~rG~GI~l~~~~~~i~~~---~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNG-SRGRGIKLFNNLEQILRF---SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES--------EEEES-HHHHHCC---HCCTTS-EEEEE--S
T ss_pred EEEEecccc-CCCCCceecCCHHHHHHH---hhhhhhhhhhhhccC
Confidence 489999764 589999999999888753 122345699999997
No 109
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.39 E-value=0.0062 Score=62.24 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=63.4
Q ss_pred ccCHHHHHHHHHhhCCc-EEEEecCC-C--CCCcCcEEeCCHHHHHHHHHHhcCC-------------CCcEEEeeccCC
Q 013695 3 VNDLESAWRAGKQFGYP-LMVKSKRL-A--YDGRGNAVAKSEEELSSAITALGGF-------------DRGLYVEKWAPF 65 (438)
Q Consensus 3 v~s~ee~~~~~~~igyP-vVvKP~~~-g--~~g~Gv~iv~~~eel~~~~~~~~~~-------------~~~~lvEe~I~g 65 (438)
++|.+|+.++++++||| +|+|+... + ..+.||.+..|++|+.++++++.+. -..++||+++++
T Consensus 25 ~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~ 104 (392)
T PRK14046 25 AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPI 104 (392)
T ss_pred ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCC
Confidence 67999999999999995 59997432 1 1233799999999999999887532 146999999998
Q ss_pred ceeEEEEEEEecC-CeEEEE
Q 013695 66 VKELAVIVVRGRD-KSILCY 84 (438)
Q Consensus 66 ~~E~sv~~~~~~~-G~~~~~ 84 (438)
.+|+-+-+..|.. |.++.+
T Consensus 105 ~~E~ylgi~~D~~~g~~v~~ 124 (392)
T PRK14046 105 ERELYLGFVLDRKSERVRVI 124 (392)
T ss_pred CcEEEEEEEECCCCCcEEEE
Confidence 8999999888754 555544
No 110
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=97.33 E-value=0.0019 Score=60.61 Aligned_cols=85 Identities=27% Similarity=0.328 Sum_probs=56.9
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCC----CCcCcEE-eCCHHHHHHHHHHhcC---------CCCcEEEeeccC-Cc
Q 013695 2 EVNDLESAWRAGKQFGYPLMVKSKRLAY----DGRGNAV-AKSEEELSSAITALGG---------FDRGLYVEKWAP-FV 66 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~----~g~Gv~i-v~~~eel~~~~~~~~~---------~~~~~lvEe~I~-g~ 66 (438)
.++|.+|+.++++++|||+++|-..-.. .--||.+ ++|++++.++++++.. ....++||+.++ ++
T Consensus 31 ~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g 110 (222)
T PF13549_consen 31 LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGG 110 (222)
T ss_dssp EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCc
Confidence 3678999999999999999999853111 1137877 8999999999987641 125799999999 66
Q ss_pred eeEEEEEEEecC-CeEEEEee
Q 013695 67 KELAVIVVRGRD-KSILCYPV 86 (438)
Q Consensus 67 ~E~sv~~~~~~~-G~~~~~~~ 86 (438)
.|+.+-+.+|.. |-++.++.
T Consensus 111 ~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 111 RELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEEEECCCCCCEEEEcC
Confidence 999999988764 55555544
No 111
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.30 E-value=0.0059 Score=54.60 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=62.3
Q ss_pred CcEEEeeccCCceeEEEEEEEec-CCeEEEEeeeeeEEec--Ce--------------eeEE---EcCCCCCHHHHHHHH
Q 013695 55 RGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVETIHKE--NI--------------CHIV---KAPAAVPWKISELAT 114 (438)
Q Consensus 55 ~~~lvEe~I~g~~E~sv~~~~~~-~G~~~~~~~~e~~~~~--g~--------------~~~~---~~P~~l~~~~~~~i~ 114 (438)
....||||+-| ..+.+..+.+. .+++-.+++...++.+ |. .... -.|..+-+.+..++.
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vf 99 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAVLRESLLPKVF 99 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEEE-GGGHHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccchhHhhHHHHH
Confidence 55999999998 66666655432 3466566654444332 21 0111 136667778888888
Q ss_pred HHHHHHHHHc------CceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 115 DVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 115 ~~a~~i~~~l------g~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+++.+++++. |..|+|.+|..+|+|.++++.|+.+|..+
T Consensus 100 e~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~g 144 (188)
T PF06973_consen 100 EMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVG 144 (188)
T ss_dssp HHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-G
T ss_pred HHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccC
Confidence 8888877764 77899999999999999999999999874
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.17 E-value=0.021 Score=58.34 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=62.4
Q ss_pred ccCHHHHHHHHHh---hCCc-EEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcCCC----------CcEEEeeccC
Q 013695 3 VNDLESAWRAGKQ---FGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGFD----------RGLYVEKWAP 64 (438)
Q Consensus 3 v~s~ee~~~~~~~---igyP-vVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~~~----------~~~lvEe~I~ 64 (438)
+++.+|+.+++++ ++.| +||||.... ||| ||.+++|++|+.++.+++.+.. ..++||++++
T Consensus 34 ~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~-GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~ 112 (423)
T PLN02235 34 VTESTDFNELANKEPWLSSTKLVVKPDMLF-GKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVP 112 (423)
T ss_pred cCCHHHHHHHHHhhhhhCCCcEEEEccccc-CCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCC
Confidence 4889999999988 8875 699997643 566 5999999999999998876432 4689999999
Q ss_pred CceeEEEEEEEecCCeE
Q 013695 65 FVKELAVIVVRGRDKSI 81 (438)
Q Consensus 65 g~~E~sv~~~~~~~G~~ 81 (438)
-.+|+-+-++.|.+...
T Consensus 113 i~~E~Ylsi~~DR~~~~ 129 (423)
T PLN02235 113 HDQEFYLSIVSDRLGCS 129 (423)
T ss_pred CcceEEEEEEEecCCCE
Confidence 88898888777666544
No 113
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.87 E-value=0.0076 Score=55.77 Aligned_cols=76 Identities=32% Similarity=0.394 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHhhCCc-EEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcCC-------------CCcEEEeecc
Q 013695 2 EVNDLESAWRAGKQFGYP-LMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF-------------DRGLYVEKWA 63 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~~-------------~~~~lvEe~I 63 (438)
.++|++|+.++++.+|.| +||||.... ||| ||.+++|++|+.++..++.+. -..++||+++
T Consensus 23 ~a~s~eea~~~~~~l~~~~~VvKaQvl~-GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v 101 (202)
T PF08442_consen 23 VATSPEEAREAAKELGGKPLVVKAQVLA-GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFV 101 (202)
T ss_dssp EESSHHHHHHHHHHHTTSSEEEEE-SSS-STTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE--
T ss_pred ecCCHHHHHHHHHHhCCCcEEEEEeEee-cCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecC
Confidence 368999999999999985 799996543 555 699999999999998887531 1668999999
Q ss_pred CCceeEEEEEEEecC
Q 013695 64 PFVKELAVIVVRGRD 78 (438)
Q Consensus 64 ~g~~E~sv~~~~~~~ 78 (438)
+-.+|+-+-+..|.+
T Consensus 102 ~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 102 DIKREYYLSITLDRE 116 (202)
T ss_dssp -CCEEEEEEEEEETT
T ss_pred ccCceEEEEEEeccC
Confidence 988898887776654
No 114
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.83 E-value=0.032 Score=57.38 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=56.3
Q ss_pred cccCHHHHHHHHHhh---CCcEEEEecCCCCCCcC-----------cEEeCCHHHHHHHHHHhcCC--------C-----
Q 013695 2 EVNDLESAWRAGKQF---GYPLMVKSKRLAYDGRG-----------NAVAKSEEELSSAITALGGF--------D----- 54 (438)
Q Consensus 2 ~v~s~ee~~~~~~~i---gyPvVvKP~~~g~~g~G-----------v~iv~~~eel~~~~~~~~~~--------~----- 54 (438)
.++|.+|+.++++++ ++|+|+|+.... |||| |.++++ +|+.++++++.+. +
T Consensus 51 va~t~eea~~aa~~l~~~~~pvVvKaqv~~-GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v 128 (422)
T PLN00124 51 AASSLDEVKKALEKMFPDEGEVVVKSQILA-GGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPV 128 (422)
T ss_pred eeCCHHHHHHHHHHhcccCCcEEEEEEecc-CCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCcee
Confidence 368999999999999 699999997432 3444 667766 9999998887532 1
Q ss_pred CcEEEeeccCCceeEEEEEEEec
Q 013695 55 RGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 55 ~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
..++|||.+...+|+-+-+..|.
T Consensus 129 ~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 129 NKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred ceEEEEEeecCCceEEEEEEecc
Confidence 35887887776789999888875
No 115
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.75 E-value=0.0099 Score=59.26 Aligned_cols=78 Identities=32% Similarity=0.347 Sum_probs=62.5
Q ss_pred cccCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcC----C------CCcEEEeeccC-C
Q 013695 2 EVNDLESAWRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGG----F------DRGLYVEKWAP-F 65 (438)
Q Consensus 2 ~v~s~ee~~~~~~~ig-yPvVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~----~------~~~~lvEe~I~-g 65 (438)
.++|.+|+.++++++| .|+|||+-... ||| ||.+++|.+|..++.+.+.+ . ...++||++++ -
T Consensus 24 v~~s~eea~~~a~~lg~~~~VvKaQV~a-GGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~ 102 (387)
T COG0045 24 VATSPEEAEEAAKELGGGPVVVKAQVHA-GGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDII 102 (387)
T ss_pred eeeCHHHHHHHHHHhCCCcEEEEeeeee-cCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCc
Confidence 4689999999999998 89999996533 455 79999999999999988765 2 27799999998 4
Q ss_pred ceeEEEEEEEecCCe
Q 013695 66 VKELAVIVVRGRDKS 80 (438)
Q Consensus 66 ~~E~sv~~~~~~~G~ 80 (438)
.+|+-+-++.|...+
T Consensus 103 ~~E~Ylsiv~DR~~~ 117 (387)
T COG0045 103 KKEYYLSIVLDRSSR 117 (387)
T ss_pred cceEEEEEEEEcCCC
Confidence 348888877665543
No 116
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.67 E-value=0.028 Score=48.23 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=72.5
Q ss_pred CcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEecCeee
Q 013695 18 YPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICH 97 (438)
Q Consensus 18 yPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~~~ 97 (438)
-|+.|||.... -.---.+..+.+++...-. ...+..+++.+.++...|+.+.++ +|+++.... |....
T Consensus 2 ~~~FiKP~~~~-K~F~g~V~~~~~dl~~~~~--~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~----Y~~~~-- 69 (130)
T PF14243_consen 2 RPVFIKPPDDD-KSFTGRVFRSGEDLIGFGS--LDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSP----YRGDW-- 69 (130)
T ss_pred CCeEeCCCCCC-CcceeEEEcchhhccccCC--CCCCceEEEeceEeeeeeEEEEEE---CCEEEEEee----cCCCc--
Confidence 48999996422 1222235566666542111 123356999999998899999887 467765543 22211
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCc
Q 013695 98 IVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 98 ~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~ 157 (438)
....++++.+.+.+..... -..--.+.+|+-++++|..+++|+|+--+ +|.+
T Consensus 70 ----~~~~~~~~~~~~~~~~~~~---~~~p~~~vlDvg~~~~G~~~lVE~N~~~~-sG~Y 121 (130)
T PF14243_consen 70 ----DLEPDPDVVAFAIQALAAA---WTLPPAYVLDVGVTDDGGWALVEANDGWS-SGLY 121 (130)
T ss_pred ----ccCCCHHHHHHHHHHHHhc---ccCCCeEEEEEEEeCCCCEEEEEecCccc-cccc
Confidence 1112445444444443322 12235778999998888999999999865 4544
No 117
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.53 E-value=0.053 Score=51.60 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 106 PWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 106 ~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.++..++|.++|+++.+.+. .+.|||..+ +|.+||-|+...++++
T Consensus 177 kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~-~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 177 KPKNLEEMIEIAEKLSKGFP---FVRVDLYNV-DGKIYFGELTFTPGAG 221 (239)
T ss_pred CChhHHHHHHHHHHHccCCC---EEEEEEEEe-CCcEEEEeeecCCCCc
Confidence 45667889999999888755 569999886 5779999999999843
No 118
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.35 E-value=0.036 Score=54.36 Aligned_cols=91 Identities=27% Similarity=0.334 Sum_probs=69.6
Q ss_pred CcccCHHHHHHHHHhh--CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC---CCcEEEeeccCCceeEEEEEEE
Q 013695 1 MEVNDLESAWRAGKQF--GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF---DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 1 ~~v~s~ee~~~~~~~i--gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~---~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
+++-|.+|+..++..+ +-|+=+||.. +.+|+|..++.|.++|+.++..+... ...+++|+-++...-+||--++
T Consensus 118 ~tvFs~~DA~~A~~~LL~~G~VRlKp~~-a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 118 YTVFSREDARRAARRLLRDGPVRLKPVH-ATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred ccccCHHHHHHHHHHHhccCCeeeccCc-ccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEEEEE
Confidence 3567899999999876 6799999975 56899999999999999999875421 1349999999976788887765
Q ss_pred ecCCeEEEEeeeeeEEec
Q 013695 76 GRDKSILCYPVVETIHKE 93 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~~ 93 (438)
..|.+..|--+++...+
T Consensus 197 -v~g~~~SY~GtQ~lT~d 213 (355)
T PF11379_consen 197 -VAGLVASYYGTQRLTRD 213 (355)
T ss_pred -ECCEEEEEeeEeecccC
Confidence 34556666556655444
No 119
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.53 E-value=0.049 Score=54.82 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=68.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.+++|+++..+-+....++.+.|++.|+.++..+.+-+-+.+.+.+.++.+++.+++++|++-||+ -.+...++.....
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~ 102 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK 102 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 456678876555566778888899999876655555566677788888888888999999999877 4788888887889
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 103 p~i~VPTt 110 (349)
T cd08550 103 PIVIVPTI 110 (349)
T ss_pred CEEEeCCc
Confidence 99999984
No 120
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.45 E-value=0.067 Score=53.86 Aligned_cols=87 Identities=21% Similarity=0.170 Sum_probs=68.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
+++.|+++...-+....++...|++.|+.+.......+-+.+.+.+.++.+++.+++++|++-||+. .....++.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~ 102 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA 102 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence 4677888765555778888889999999875444555666677788888888889999999998874 777788777789
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 103 P~iaIPTT 110 (351)
T cd08170 103 PVVIVPTI 110 (351)
T ss_pred CEEEeCCc
Confidence 99999984
No 121
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.50 E-value=0.17 Score=51.30 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=66.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++..........+...|+..|+.+.......+-+-+.+.+.++.+++.+++++|++-||+ -.+...++.....
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 109 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV 109 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence 467678765444446677778888889876443445566667777788888888999999999887 4888888887789
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 110 p~i~IPTt 117 (366)
T PRK09423 110 PVVIVPTI 117 (366)
T ss_pred CEEEeCCc
Confidence 99999984
No 122
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.20 E-value=0.2 Score=50.76 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCC
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 347 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 347 (438)
.++.|+++..+.. .....+.+.|+..|+.+.. .-...|-+.+.+.+.++.++..+++++|++-|++. ++..+++...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4777888765544 5667888899998887642 12345778888888988888889999999988763 6666665433
Q ss_pred ------------------CCCEEEecCC
Q 013695 348 ------------------PLPVIGVPVR 357 (438)
Q Consensus 348 ------------------~~pVI~~p~~ 357 (438)
..|+|.+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 104 TNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred hCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 6899999984
No 123
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.02 E-value=0.18 Score=50.76 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=64.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEE-EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~-~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 348 (438)
.++.|+++..+.......+...|++.|+.+. ......+-+-+.+.+..+.+++.+++++|++-||+ -.+...++....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~ 102 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG 102 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 4677888765555566777888888898764 22234455666667777777888999999999887 477778877778
Q ss_pred CCEEEecCC
Q 013695 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVI~~p~~ 357 (438)
.|+|.+|+.
T Consensus 103 ~p~i~VPTt 111 (345)
T cd08171 103 KPVFTFPTI 111 (345)
T ss_pred CCEEEecCc
Confidence 899999984
No 124
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.80 E-value=0.29 Score=49.30 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=66.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++.........++.+.|...| .+... ...+.+.+.+.+.++.+++.+.+++|++-||+ ..+.+.+|-....
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi 112 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI 112 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 467788876655555566777788888 76543 45688888888888888888899999998876 5788888877788
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 113 p~I~IPTT 120 (350)
T PRK00843 113 PFISVPTA 120 (350)
T ss_pred CEEEeCCC
Confidence 99999985
No 125
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.74 E-value=0.35 Score=48.58 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=89.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|+++.........++.+.|...|+++..-+.. .+.+.+.+.+.++.+.+.++ +++|++-||+ ..+.+++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 467788876555567788889999999887654444 26667788888888888888 7899888776 6888888
Q ss_pred hc--CCCCCEEEecCCC-----CCCCChhhHHHh--hc--CCCCCceEEEEeCC----------cchHHHHHHHHHcCCC
Q 013695 344 AA--RTPLPVIGVPVRA-----SALDGLDSLLSI--VQ--MPRGVPVATVAINN----------ATNAGLLAVRMLGFGD 402 (438)
Q Consensus 344 ~~--~~~~pVI~~p~~~-----~~~~g~~~l~s~--~~--~~~gip~~tv~i~~----------~~~Aa~~a~~il~~~~ 402 (438)
|+ ..-.|+|.+|+.. +..+|..++-.. -+ -+.-.|..++ +|- ..+...-++....+.|
T Consensus 105 A~~~~rgip~i~VPTT~~a~vds~~~~k~~i~~~~~kn~~g~~~~P~~vi-iD~~~l~tlP~~~~~~G~~d~ik~~~i~d 183 (345)
T cd08195 105 AATYMRGIDFIQIPTTLLAQVDSSVGGKTGVNHPLGKNLIGAFYQPKLVL-IDTDFLKTLPEREFRSGLAEVIKYGLIAD 183 (345)
T ss_pred HHHHhcCCCeEEcchhHHHHhhccCCCcceecCCCCCceecccCCCCEEE-EehHHhhhCCHHHHHhHHHHHHHHHhhCC
Confidence 84 5678999999851 222232211000 00 0122343332 231 1222333566677789
Q ss_pred hHHHHHHHHH
Q 013695 403 ADLRARMQQY 412 (438)
Q Consensus 403 ~~~~~~~~~~ 412 (438)
+.++.++...
T Consensus 184 ~~~~~~l~~~ 193 (345)
T cd08195 184 AELFEWLEEN 193 (345)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 126
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.066 Score=52.50 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEecCee
Q 013695 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENIC 96 (438)
Q Consensus 17 gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~~ 96 (438)
.||+|||=. .+.+|.|-.+|+|.+|+.....-+.-.....-+|.||+-.+.+.+.-+......+..-.+..++..
T Consensus 239 tyPvVVkvg-hahsGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKaymRtsIsgnWKt---- 313 (488)
T KOG3895|consen 239 TYPVVVKVG-HAHSGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWKT---- 313 (488)
T ss_pred CCcEEEEec-ccccccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHHhhhhhccCccc----
Confidence 399999984 455788999999999987644322111233678999985455555544211101111222222211
Q ss_pred eEEEcCCCCCHHHHHHH------HHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 97 HIVKAPAAVPWKISELA------TDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 97 ~~~~~P~~l~~~~~~~i------~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
+....+.++| +-....+-+.+|.--+|.|+....+||+=|++|+|--
T Consensus 314 -------NtGSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~ 366 (488)
T KOG3895|consen 314 -------NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDS 366 (488)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccc
Confidence 1222333322 2244445555676679999999989999999999873
No 127
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=93.73 E-value=0.3 Score=48.81 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=62.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCC--ChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART 347 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~--~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~ 347 (438)
.++.|+++...-.....++.+.|++.|+.+......... +.+.+.+.++.+++ +.+++|++-||+ -++.++++-..
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~ 103 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV 103 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence 467788876554445677888899999876532212233 45666666666666 889999998876 58888888778
Q ss_pred CCCEEEecCC
Q 013695 348 PLPVIGVPVR 357 (438)
Q Consensus 348 ~~pVI~~p~~ 357 (438)
..|+|.+|+.
T Consensus 104 gip~I~VPTT 113 (332)
T cd08549 104 GKPFISVPTA 113 (332)
T ss_pred CCCEEEeCCC
Confidence 8999999985
No 128
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=93.64 E-value=0.054 Score=51.83 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=83.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE-EecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhcCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v-~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~ 348 (438)
+++.++++...-....+++...|+..|+++..-. ...+-+-+...+..+.++..+++++|++-|| ...+.-+++.+..
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG 99 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 5787888776666667788888999999986321 1122334445556655655678888887765 5789999999999
Q ss_pred CCEEEecCCCCCCCChhhHHHhhc--------C-CCCCceEEEE-eC---C------cchHHHHHHHHHcCCChHHHHHH
Q 013695 349 LPVIGVPVRASALDGLDSLLSIVQ--------M-PRGVPVATVA-IN---N------ATNAGLLAVRMLGFGDADLRARM 409 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~--------~-~~gip~~tv~-i~---~------~~~Aa~~a~~il~~~~~~~~~~~ 409 (438)
+|.|.+|+. .+.||+.+-.+.+. + |.-.|.+.+. ++ + ..+.+=+..++-++.|+.|..++
T Consensus 100 ~p~isVPTa-~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~~ 178 (250)
T PF13685_consen 100 IPFISVPTA-ASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHEY 178 (250)
T ss_dssp --EEEEES---SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeccc-cccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHHh
Confidence 999999994 34555543222221 1 3334444332 11 1 23445566778888888888876
Q ss_pred HHHHHHHHHH
Q 013695 410 QQYMEDMRDD 419 (438)
Q Consensus 410 ~~~~~~~~~~ 419 (438)
.++-.+...+
T Consensus 179 ~e~~~~~~~~ 188 (250)
T PF13685_consen 179 GEPYCEYAAD 188 (250)
T ss_dssp TS---HHHHH
T ss_pred hhhHHHHHHH
Confidence 5544444333
No 129
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=93.55 E-value=0.28 Score=49.35 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=62.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE-ecC--CChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV-SAH--RTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR 346 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~-s~h--~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~ 346 (438)
.++.|+++...-.....++...|++.|+++..... ... .+.+...+.++.+++ +++++|++-||+ -.....++..
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~ 102 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK 102 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence 46767775543333467788889999987643322 222 666777777777766 889999999887 4788888888
Q ss_pred CCCCEEEecCC
Q 013695 347 TPLPVIGVPVR 357 (438)
Q Consensus 347 ~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 103 ~~~p~i~IPTT 113 (348)
T cd08175 103 TGIPYISVPTA 113 (348)
T ss_pred cCCCEEEecCc
Confidence 88999999984
No 130
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.51 E-value=0.4 Score=48.01 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=66.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++....+....++...|++.| .+..-+ ..+-+.+.+.+.++.+++.+++++|++-||+ -.+...++-....
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~ 103 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI 103 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 467788876555566677888898888 765543 4567788888888888888999999998876 5788888877789
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 104 p~i~iPTT 111 (339)
T cd08173 104 PFISVPTA 111 (339)
T ss_pred CEEEecCc
Confidence 99999984
No 131
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=93.22 E-value=0.15 Score=46.21 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=47.6
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--CCCCCEE
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVI 352 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVI 352 (438)
++|.++ ++.+.++++.|.++||++.+| .+ |++|| ++.|++|..+.. -.+.|.++.| +|-.|-|
T Consensus 4 LISVsD--K~~l~~lAk~L~~lGf~I~AT----~G----TAk~L---~e~GI~v~~V~k--~TgfpE~l~GRVKTLHP~i 68 (187)
T cd01421 4 LISVSD--KTGLVEFAKELVELGVEILST----GG----TAKFL---KEAGIPVTDVSD--ITGFPEILGGRVKTLHPKI 68 (187)
T ss_pred EEEEeC--cccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHcCCeEEEhhh--ccCCcHhhCCccccCChhh
Confidence 677664 999999999999999999999 78 99999 677999887754 1234455444 3555554
No 132
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=92.95 E-value=0.56 Score=47.36 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=64.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCCe---EEEEEcCCC-CCchhhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~~i 343 (438)
.+++|+++..........+.+.|+..|+++...+.+ .+.+.+.+.+.++.+.+.|++ ++|++-||+ ..+.+++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 467777765444446677889999999987655543 355667777777778888998 999988876 6888888
Q ss_pred hcC--CCCCEEEecCC
Q 013695 344 AAR--TPLPVIGVPVR 357 (438)
Q Consensus 344 ~~~--~~~pVI~~p~~ 357 (438)
|.. ...|+|.+|+.
T Consensus 104 A~~~~rgip~I~IPTT 119 (355)
T cd08197 104 AALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHhccCCCEEEecCc
Confidence 753 46899999984
No 133
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=92.78 E-value=1.2 Score=44.07 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=83.1
Q ss_pred EEEEEecCC--HHHHHHH----HHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE-EecC-
Q 013695 237 GHITIVGSS--MGLVESR----LNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI-VSAH- 308 (438)
Q Consensus 237 G~Vi~~G~~--~~ea~~k----a~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v-~s~h- 308 (438)
|.+...|.| ..|+.+| ..+.+.+++ .+..+-+++..+ .|.+ ..+...+++++... --..
T Consensus 16 ~r~~lkGaDg~~~e~~~ra~~~v~rfL~~l~-------~~~~~~flt~p~----~mG~--~~~~~~~~~~~v~~~~~~~~ 82 (355)
T COG3199 16 GRVLLKGADGLVAEAPKRAIVRVKRFLKKLD-------ANGDVEFLTPPG----PMGE--SLAEASGFKYRVIRFQESTP 82 (355)
T ss_pred ceeeccccCcchhhhhHHHHHHHHHHHHhcc-------ccCceEEEeCCc----ccch--hHHHhhcCcceEEeecccCC
Confidence 344455555 5666666 444455543 233454565432 1111 24466788877662 1111
Q ss_pred -CChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-CCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC
Q 013695 309 -RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 309 -~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~ 386 (438)
-|-+.|..+++++.++|+++++ .+|+.+...++..+ ....||+|+|.+..+..| |.-+ +
T Consensus 83 ~tTa~DT~~~~r~~~~~gVdlIv-faGGDGTarDVa~av~~~vPvLGipaGvk~~Sg---------------vfA~---~ 143 (355)
T COG3199 83 RTTAEDTINAVRRMVERGVDLIV-FAGGDGTARDVAEAVGADVPVLGIPAGVKNYSG---------------VFAL---S 143 (355)
T ss_pred CccHHHHHHHHHHHHhcCceEEE-EeCCCccHHHHHhhccCCCceEeeccccceecc---------------cccc---C
Confidence 3456788899999999997654 67889899999888 899999999997554333 1111 3
Q ss_pred cchHHHHHHHHHcC
Q 013695 387 ATNAGLLAVRMLGF 400 (438)
Q Consensus 387 ~~~Aa~~a~~il~~ 400 (438)
+..||.++.+.+.-
T Consensus 144 P~~aa~l~~~~lkg 157 (355)
T COG3199 144 PEDAARLLGAFLKG 157 (355)
T ss_pred hHHHHHHHHHHhcc
Confidence 66788888777765
No 134
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=92.70 E-value=0.68 Score=46.49 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=84.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe-c--CCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-A--HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s-~--h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|+++..........+...|+..|+++...+.+ . +.+.+.+.+.++.+++.++ +++|++-||+ -.+.+.+
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 467788866554556677778899999887543433 2 4455667777777777776 7899988876 4677777
Q ss_pred h--cCCCCCEEEecCCC-----CCCCChhhHHHhh--c--CCCCCceEEEEeCC----------cchHHHHHHHHHcCCC
Q 013695 344 A--ARTPLPVIGVPVRA-----SALDGLDSLLSIV--Q--MPRGVPVATVAINN----------ATNAGLLAVRMLGFGD 402 (438)
Q Consensus 344 ~--~~~~~pVI~~p~~~-----~~~~g~~~l~s~~--~--~~~gip~~tv~i~~----------~~~Aa~~a~~il~~~~ 402 (438)
+ -....|+|.+|+.. +..+|..++...- + -+.-.|-.++ +|- ..+...-++....+.|
T Consensus 101 A~~~~~~~p~i~VPTT~~a~~ds~~~~k~~i~~~~~kn~~~~~~~P~~vi-iDp~l~~tlP~~~~~~G~~d~ik~~~i~d 179 (344)
T TIGR01357 101 AATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPGGKNLIGTFYQPKAVL-IDPDFLKTLPDRELRSGMAEVIKHGLIAD 179 (344)
T ss_pred HHHHccCCCEEEecCchhheeccccCcceeEeCCCCceEEeeccCCceEE-EcHHHHhhCCHHHHHhHHHHHHHHHhhCC
Confidence 7 34568999999841 1222222211100 0 0011233322 231 1122334667777789
Q ss_pred hHHHHHHHHH
Q 013695 403 ADLRARMQQY 412 (438)
Q Consensus 403 ~~~~~~~~~~ 412 (438)
+.+++++...
T Consensus 180 ~~~~~~l~~~ 189 (344)
T TIGR01357 180 AELFDELESN 189 (344)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 135
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=92.67 E-value=0.43 Score=48.53 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=59.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc----
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA---- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~---- 345 (438)
+++.|+++..+ . ...++...|++.|+.+..-....+=+.+.+.+.++.+++.+++++|++-||+. .....++.
T Consensus 23 ~r~livtd~~~-~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~ 100 (374)
T cd08183 23 RRVLLVTGASS-L-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN 100 (374)
T ss_pred CcEEEEECCch-H-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence 46767776543 2 77788888999998865432233444456777777788889999999998874 44444432
Q ss_pred ------------------CCCCCEEEecCC
Q 013695 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred CCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 135899999984
No 136
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=92.54 E-value=0.35 Score=48.45 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=61.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++..........+.+.|++.++.+...+ ..|-+.+.+.+.++.+++.+++++|++-||+. .+..+++.....
T Consensus 24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~ 102 (337)
T cd08177 24 SRALVLTTPSLATKLAERVASALGDRVAGTFDGA-VMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL 102 (337)
T ss_pred CeEEEEcChHHHHHHHHHHHHHhccCCcEEeCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence 4677787654444456667777777655433222 23666666777777778889999999998874 777777777789
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 103 p~i~IPTt 110 (337)
T cd08177 103 PIIAIPTT 110 (337)
T ss_pred CEEEEcCC
Confidence 99999985
No 137
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=92.50 E-value=0.44 Score=48.49 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=62.3
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh---
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... ....++.+.|++.|+.+.. .-...+-+.+.+.+.++.++..+++++|++-||+. ....+++
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~ 103 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA 103 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4677888654432 2678888999999987642 22345666777788888888889999999998874 4454554
Q ss_pred ---------------cCCCCCEEEecCC
Q 013695 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVI~~p~~ 357 (438)
.....|+|.+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 104 TNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred hCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 2346899999984
No 138
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=92.34 E-value=2.7 Score=38.39 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEE-ecCCChhHHHHHHHH
Q 013695 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIV-SAHRTPDLMFSYASS 320 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~-s~h~~~~~~~~~~~~ 320 (438)
.++..|+..|..+....+. .....+++++.+|+ .|...+.++++.|++.|+.+++--. ..+-+++++..|.+.
T Consensus 85 ~~l~~AL~~A~~~L~~~~~----~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 85 ANFITGIQIAQLALKHRQN----KNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred chHHHHHHHHHHHHhcCCC----cCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 4577888888888765431 12234766777765 5567788999999999999864433 367778888888876
Q ss_pred Hh
Q 013695 321 AH 322 (438)
Q Consensus 321 ~~ 322 (438)
..
T Consensus 161 ~~ 162 (187)
T cd01452 161 VN 162 (187)
T ss_pred hc
Confidence 53
No 139
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=92.07 E-value=0.43 Score=48.54 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=61.7
Q ss_pred CeEEEEEecCC-CHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcC-
Q 013695 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR- 346 (438)
Q Consensus 271 ~~v~iv~gs~s-D~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~- 346 (438)
.++.|+++..- +.....++...|++.|+.+.. .-...+-+.+.+.+.++.+++.+++++|++-||+. .....++..
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~ 106 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA 106 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 46767775432 334577888889999987642 11235677777888888888889999999998874 455555442
Q ss_pred -----------------CCCCEEEecCC
Q 013695 347 -----------------TPLPVIGVPVR 357 (438)
Q Consensus 347 -----------------~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 107 GSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred HCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 36899999984
No 140
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.01 E-value=0.89 Score=45.92 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=63.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|+++.........++...|+..|+++..-+.+ .+.+.+.+.+.++.+.+.|+ +++|++-||+ -.+++++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 467788876555567777888899999987643322 24556777777777777777 8999888876 5788888
Q ss_pred hc--CCCCCEEEecCC
Q 013695 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVI~~p~~ 357 (438)
+. ....|+|.+|+.
T Consensus 112 A~~~~~gip~i~IPTT 127 (358)
T PRK00002 112 AATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHhcCCCCEEEcCch
Confidence 73 557899999985
No 141
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=91.80 E-value=1 Score=45.40 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=64.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC----eEEEEEcCCC-CCchhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI----EIIIAGAGGA-AHLPGM 342 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~----~v~i~~ag~~-~~l~~~ 342 (438)
.++.|++...........+.+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++|++-||+ -.++++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~ 106 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL 106 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence 467677755434445567788888889987643333 36677888888888888888 9999888765 688999
Q ss_pred hh--cCCCCCEEEecCC
Q 013695 343 VA--ARTPLPVIGVPVR 357 (438)
Q Consensus 343 i~--~~~~~pVI~~p~~ 357 (438)
+| -..-.|.|.+|+.
T Consensus 107 ~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 107 AASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHHhcCCCCEEEEcCc
Confidence 88 3667899999994
No 142
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=91.52 E-value=0.8 Score=45.59 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=62.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCC-
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART- 347 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~- 347 (438)
.++.|+++.........++...|++. +.+..- ....+-+.+.+.+.++.+++.+.+++|++-|++ -.+...++...
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~ 102 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN 102 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence 46778886554446667778888876 654322 233456777777888888888899999998876 47777877765
Q ss_pred -CCCEEEecCC
Q 013695 348 -PLPVIGVPVR 357 (438)
Q Consensus 348 -~~pVI~~p~~ 357 (438)
..|+|.+|+.
T Consensus 103 ~~~p~i~iPTt 113 (332)
T cd07766 103 RGLPIIIVPTT 113 (332)
T ss_pred CCCCEEEEeCC
Confidence 7899999984
No 143
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=91.15 E-value=0.76 Score=46.57 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=59.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcC--
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR-- 346 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~-- 346 (438)
.++.|+++..+- ....+.+.|+..|+.+.. .-...+-+.+.+.+.++.+++.+++++|++-||+. ++..+++..
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~ 101 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG 101 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 467777755432 566677888888876532 12334666677778888888889999999998763 555555432
Q ss_pred --------------------CCCCEEEecCC
Q 013695 347 --------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 --------------------~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 102 APREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 35799999984
No 144
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=91.13 E-value=0.81 Score=46.42 Aligned_cols=87 Identities=21% Similarity=0.207 Sum_probs=60.1
Q ss_pred CeEEEEEecCCC-HHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcC-
Q 013695 271 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAAR- 346 (438)
Q Consensus 271 ~~v~iv~gs~sD-~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~- 346 (438)
.++.|+++.... .....++.+.|++.|+++..- -...|-+.+.+.+.++.++..+++++|++-||+. .+...++..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 467677764332 236788889999999886422 2335666677788888888889999999998873 444444332
Q ss_pred ---------------------CCCCEEEecCC
Q 013695 347 ---------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 ---------------------~~~pVI~~p~~ 357 (438)
...|+|.||+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 136 (370)
T cd08192 105 GHPGPLWDYEDIEGGWPRITDAIPPLIAIPTT 136 (370)
T ss_pred hCCCCHHHHhcccccccccCCCCCCEEEecCC
Confidence 24799999984
No 145
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=91.02 E-value=0.83 Score=46.52 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=60.9
Q ss_pred CeEEEEEecCC--CHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc-
Q 013695 271 PRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~s--D~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
.++.|+++..+ ......++.+.|++.|+++.. .-...+=+.+.+.+..+.+++.+++++|++-||+. .....++.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 47878887654 345777888999999987642 12234556677777777788889999999998874 33333322
Q ss_pred ----------------------CCCCCEEEecCC
Q 013695 346 ----------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ----------------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 139 (380)
T cd08185 106 AANEGDYWDYIFGGTGKGKPPPEKALPIIAITTT 139 (380)
T ss_pred hhCCCCHHHHhcccccccccCCCCCCCEEEEcCC
Confidence 135899999984
No 146
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=90.78 E-value=0.99 Score=46.70 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCcEEe--CCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013695 7 ESAWRAGKQFGYPLMVKSKRLAYDGRGNAVA--KSEEELSSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 7 ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv--~~~eel~~~~~~~~~~~~~~lvEe~I~g 65 (438)
-|+.+++..-.=-+|+||. ++|||+||.+= .++++-+++++++...+ +|+|||+.-
T Consensus 328 ~dL~~~~~a~r~~lVLKP~-D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~--yilQe~v~~ 385 (445)
T PF14403_consen 328 VDLVEFAIANRDRLVLKPN-DEYGGKGVYIGWETSPEEWEAALEEAAREP--YILQEYVRP 385 (445)
T ss_pred hhHHHHHHhchhcEEeccc-cccCCCCeEECCcCCHHHHHHHHHHHhcCC--cEEEEEecC
Confidence 3566666556667999995 67899999975 57788889998877666 999999985
No 147
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=90.62 E-value=0.45 Score=48.14 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=60.1
Q ss_pred CeEEEEEecCCCHH-HHHHHHHHHHHcCCcEEEEE-EecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh---
Q 013695 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~~-~~~~~~~~L~~~G~~~~~~v-~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
++++||++..-... ...++.+.|++.|+.+..-. ...|=+.+.+.+.++.+++.+++++|++-|++. .+.-+++
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~ 101 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLL 101 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhc
Confidence 48888887632222 57888888999999874332 566777788888888889999999999988763 2222222
Q ss_pred cC----------------CCCCEEEecCC
Q 013695 345 AR----------------TPLPVIGVPVR 357 (438)
Q Consensus 345 ~~----------------~~~pVI~~p~~ 357 (438)
.+ ...|+|.+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (366)
T PF00465_consen 102 ANPGDLRDLLGKGPPPTKPALPLIAIPTT 130 (366)
T ss_dssp TSSSCGGGGGCECSCCSS--SEEEEEESS
T ss_pred cCCCcHHHHHhhccccccCCCcEEEeeCC
Confidence 21 12899999984
No 148
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=90.47 E-value=0.9 Score=46.30 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=59.1
Q ss_pred CeEEEEEecCCCH--HHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc-
Q 013695 271 PRIGIIMGSDSDL--PVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~--~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
+++.|+++..+-. .....+...|+..|+.+.. .-..+|-+.+.+.+.++.++..+++++|++-||+. .+...++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 108 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG 108 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence 4676777643322 3457788889998987532 11234555677777777788889999999998874 44444443
Q ss_pred -----------------CCCCCEEEecCC
Q 013695 346 -----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 -----------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 109 APYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred hhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 245799999984
No 149
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=90.33 E-value=0.84 Score=46.82 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=50.0
Q ss_pred CeEEEEEecCC-CHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh
Q 013695 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~s-D~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~ 344 (438)
.++.|+++..- +.....++...|++.|+.+..- -...+-+.+.+.+.++.+++.+++++|++-||+. .+...++
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 46767775432 2236677888999999876422 1234566677778888888889999999998874 4444444
No 150
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=90.08 E-value=1.2 Score=45.24 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc--
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 345 (438)
.++.|+++..... ....++.+.|+..|+.+..- -.-.|-+.+.+.+.++.+++.+++++|++-||+. .....++.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~ 106 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA 106 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 4777777654322 24677888898889875421 1234566666777777778889999999998873 44444432
Q ss_pred -CC----------------CCCEEEecCC
Q 013695 346 -RT----------------PLPVIGVPVR 357 (438)
Q Consensus 346 -~~----------------~~pVI~~p~~ 357 (438)
+. ..|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 135 (374)
T cd08189 107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTT 135 (374)
T ss_pred hCCCCCHHHHhCccccCCCCCCEEEEECC
Confidence 11 2699999984
No 151
>PLN02834 3-dehydroquinate synthase
Probab=89.77 E-value=1.9 Score=44.69 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=63.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE--EEEe---cCCChhHHHHHHHHHhhcCCe---EEEEEcCCC-CCchh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV--RIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPG 341 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~--~v~s---~h~~~~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~ 341 (438)
.+++|++...-.......+...|+..|+++.. .+.. .+.+.+.+.+.++.+.+.|++ ++|++-||. ..+.+
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 46778886554455677788889999987554 2322 356777777777777888887 999988875 57888
Q ss_pred hhhc--CCCCCEEEecCC
Q 013695 342 MVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 342 ~i~~--~~~~pVI~~p~~ 357 (438)
++|. ..-.|+|.+|+.
T Consensus 181 ~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 181 FAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 7763 456899999994
No 152
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=89.73 E-value=1.8 Score=43.98 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=59.2
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh---
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... ....++.+.|+..|+.+..- -...|-+.+.+.+.++.+++.+++++|++-||+. ...-.++
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~ 108 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA 108 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 4676777554333 46778888999999875422 1223666677778888888889999999998874 3333332
Q ss_pred ---------------cCCCCCEEEecCC
Q 013695 345 ---------------ARTPLPVIGVPVR 357 (438)
Q Consensus 345 ---------------~~~~~pVI~~p~~ 357 (438)
-....|+|.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 109 TNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred hCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 1246899999984
No 153
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=3.2 Score=43.55 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc-----CCCCcEEEeeccCC
Q 013695 17 GYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----GFDRGLYVEKWAPF 65 (438)
Q Consensus 17 gyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~-----~~~~~~lvEe~I~g 65 (438)
....|+||... +-|+|++++++.+++........ ...+.++++.||+.
T Consensus 199 ~~~wIvKP~~~-srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASK-SRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEeccccc-cccceeEEecchhhhhhhhhcccccccccccccceeeeeccC
Confidence 46899999754 47999999999999887764311 22355888888873
No 154
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=89.12 E-value=1.6 Score=44.50 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=58.5
Q ss_pred CeEEEEEecCCC--HHHHHHHHHHHHHcCCcEEEEE-EecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc-
Q 013695 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD--~~~~~~~~~~L~~~G~~~~~~v-~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
+++.|+++..+- .....++...|++.|+++..-. ...+-+.+.+.+.++.+++.+++++|++-||+. .....++.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 467677754332 2335778888999998754321 234556677788888888889999999988773 44444432
Q ss_pred ------------------CCCCCEEEecCC
Q 013695 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 107 LEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 135799999983
No 155
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=4 Score=42.52 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHh-hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC
Q 013695 4 NDLESAWRAGKQ-FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP 64 (438)
Q Consensus 4 ~s~ee~~~~~~~-igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~ 64 (438)
.+.+++++..++ ..--+||||... ..|.|+.+++...++.+ +.+++||+||+
T Consensus 291 ~d~e~lrk~w~~nasr~wIVkppas-aRg~gIrv~~kw~q~pk--------~rpLvvQ~yie 343 (662)
T KOG2156|consen 291 ADREELRKYWEKNASRLWIVKPPAS-ARGIGIRVINKWSQFPK--------DRPLVVQKYIE 343 (662)
T ss_pred ccHHHHHHHHhhCccccEEecCccc-ccCcceEeccchhhCCC--------cccHHHHHHhh
Confidence 456777777765 222388999764 47899999998776643 24488888886
No 156
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=88.94 E-value=1.4 Score=45.04 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=57.1
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEEEEec---CCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRIVSA---HRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~v~s~---h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~ 345 (438)
+++.|+++..... ....++.+.|++.|+++.. .+- +-+...+.+.++.+++.+++++|++-||+. .....++.
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 100 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGL 100 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 4677888654333 5777888889999987632 222 223444556666677789999999998874 44445443
Q ss_pred CC------------------CCCEEEecCC
Q 013695 346 RT------------------PLPVIGVPVR 357 (438)
Q Consensus 346 ~~------------------~~pVI~~p~~ 357 (438)
.. ..|+|.+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 101 LLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 22 5799999984
No 157
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=88.53 E-value=0.91 Score=45.64 Aligned_cols=85 Identities=25% Similarity=0.212 Sum_probs=58.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++...-......+...|+..++.+ .+.+---+-+.+.+.++.+++.+++++|++-||+ -.+...++.....
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~--~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~ 101 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFV--LRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV 101 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEE--EEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence 456677764433334444445554455543 2222226667777788888888999999999877 4788888888889
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 102 p~i~VPTT 109 (347)
T cd08172 102 PVITVPTL 109 (347)
T ss_pred CEEEecCc
Confidence 99999984
No 158
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=88.05 E-value=2.2 Score=43.43 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=59.0
Q ss_pred CeEEEEEecCCCH--HHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc-
Q 013695 271 PRIGIIMGSDSDL--PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~--~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
.++.|+++..+-+ ....++.+.|++.|+++..- -...+-+.+.+.+.++.+++.+++++|++-||+. ...-.++.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~ 103 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIF 103 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence 4676777644322 45577888898889876421 1234666777888888888889999999998874 33333331
Q ss_pred --------------------CCCCCEEEecCC
Q 013695 346 --------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 --------------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTt 135 (375)
T cd08179 104 YEYPELTFEDIVKPFTLPELRNKARFCAIPST 135 (375)
T ss_pred HhCCCcCHHHHhccccccccCCCCCEEEeCCC
Confidence 224699999984
No 159
>PRK10586 putative oxidoreductase; Provisional
Probab=87.97 E-value=3.2 Score=42.01 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=56.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.+++|++|..+-......+...|++.|+.+. +.+-+-+.+...+..+..+ .+++++|++-|++. +..-.++.....
T Consensus 35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~ 111 (362)
T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKHI--LFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGL 111 (362)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEE--EeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCC
Confidence 4676888765443333555677888887652 3333444555566555444 47899999888764 666677777889
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 112 p~i~vPT~ 119 (362)
T PRK10586 112 PFVAIPTI 119 (362)
T ss_pred CEEEEeCC
Confidence 99999984
No 160
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=87.94 E-value=2.4 Score=42.78 Aligned_cols=87 Identities=21% Similarity=0.325 Sum_probs=59.1
Q ss_pred CeEEEEEecCC-C-HHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc-
Q 013695 271 PRIGIIMGSDS-D-LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~s-D-~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
.++.|+++..+ . .....++...|.+.|+++..- -...+-+.+.+.+.++.+++.+++++|++-|++. .....++-
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~ 105 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL 105 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 46767776543 2 124567888899999875422 1234666677777888888899999999998874 44444331
Q ss_pred ----------------CCCCCEEEecCC
Q 013695 346 ----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ----------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 106 IKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 235899999984
No 161
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=87.58 E-value=1.7 Score=43.82 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=64.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
+++.+++|...-.-....+.+.|...|+...+- ..-+=+-++..+..+.+...+.+++|.+-||. -...-++|-...+
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGLVVHVV-FVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCcceeee-ecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 467788887777777778889999999843332 33355566666666655556789999998775 4788889999999
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|-+|+.
T Consensus 110 pfIsvPT~ 117 (360)
T COG0371 110 PFISVPTI 117 (360)
T ss_pred CEEEecCc
Confidence 99999995
No 162
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=87.38 E-value=1.9 Score=43.84 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred CeEEEEEecCCCHH-HHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc--
Q 013695 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~~-~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 345 (438)
.++.|+++....+. ...++...|++.|+.+..- -...+-+.+.+.+..+.+++.+++++|++-||+. ...-.|+-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~ 109 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIS 109 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 46777776433322 5677888899899875432 1234566677777888888889999999998873 23322221
Q ss_pred ------------------CCCCCEEEecCC
Q 013695 346 ------------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ------------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 110 NNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred hCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 234799999984
No 163
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=87.22 E-value=3.6 Score=41.93 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=57.0
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh---
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..... ....++...|++.|+.+..- -...+-+.+.+.+.++.+++.+++++|++-||+. .+...++
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 110 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIIS 110 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 4676777543222 36777888999999876422 1223455577777777788889999999988773 3333322
Q ss_pred c-----------------CCCCCEEEecCC
Q 013695 345 A-----------------RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~-----------------~~~~pVI~~p~~ 357 (438)
. ....|+|.+|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 111 NNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 1 134799999984
No 164
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=87.17 E-value=3.4 Score=41.57 Aligned_cols=85 Identities=22% Similarity=0.229 Sum_probs=58.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEe---cCCChhHHHHHHHHHhhcC---CeEEEEEcCCC-CCchhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGM 342 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~ 342 (438)
.++.|++...-......++...|+. .++.+ .+.+ .+.+.+.+.+.++.+.+.| .+++|++-||+ ..+.++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~ 101 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF 101 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence 4676777654444566777788877 56554 2333 3556666777766666656 77999888876 578888
Q ss_pred hhc--CCCCCEEEecCC
Q 013695 343 VAA--RTPLPVIGVPVR 357 (438)
Q Consensus 343 i~~--~~~~pVI~~p~~ 357 (438)
+|. ....|.|.+|+.
T Consensus 102 vA~~~~rgip~i~VPTT 118 (344)
T cd08169 102 VASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHHhccCCcEEEecCC
Confidence 876 457899999984
No 165
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=86.58 E-value=1.7 Score=45.35 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=39.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++|.++ +..+.+.++.|.++||++.+| -+ |.++| ++.|++|..+..
T Consensus 4 LISVsD--K~~iv~lAk~L~~lGfeIiAT----gG----Tak~L---~e~GI~v~~Vsk 49 (511)
T TIGR00355 4 LLSVSD--KTGIVEFAQGLVERGVELLST----GG----TAKLL---AEAGVPVTEVSD 49 (511)
T ss_pred EEEEeC--cccHHHHHHHHHHCCCEEEEe----ch----HHHHH---HHCCCeEEEeec
Confidence 667565 899999999999999999999 78 99999 677999888755
No 166
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=86.15 E-value=2.7 Score=41.95 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=52.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec--CCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA--HRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAART 347 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~--h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~ 347 (438)
.+++|+++... ...+.+.|+..|+ .+..+... .-+.++..+.++... +.+++|++-||+ -.+.++++...
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGGGsv~D~aK~vA~~~ 98 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGGGKVIDVAKYAAFLR 98 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHhhc
Confidence 46777875443 6677888888777 22222221 223334444443322 478999888776 68999999999
Q ss_pred CCCEEEecCC
Q 013695 348 PLPVIGVPVR 357 (438)
Q Consensus 348 ~~pVI~~p~~ 357 (438)
..|+|.+|+.
T Consensus 99 ~~p~i~vPTt 108 (331)
T cd08174 99 GIPLSVPTTN 108 (331)
T ss_pred CCCEEEecCc
Confidence 9999999984
No 167
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=85.71 E-value=2.5 Score=43.12 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=57.5
Q ss_pred CeEEEEEecCC-CHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhhc--
Q 013695 271 PRIGIIMGSDS-DLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~s-D~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~-- 345 (438)
.++.|+++... ....+.++...|++.|+.+..- -...+=+.+.+.+.++.+++.+++++|++-|++. ...-.++.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~ 111 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA 111 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 46767776422 2346778889999999874221 1222445566777777888889999999998874 23323321
Q ss_pred ----------------CCCCCEEEecCC
Q 013695 346 ----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 ----------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 112 ANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred HCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 245799999984
No 168
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=85.06 E-value=4.8 Score=41.54 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..... ....++.+.|++.|+.+..- -...+-+.+.+.+.++.+++.+++++|++-||+.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4676777543222 24678888899999886432 1234666677778888888889999999998873
No 169
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=84.50 E-value=2 Score=45.08 Aligned_cols=49 Identities=22% Similarity=0.138 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.++ ++|.++ +..+.+.++.|.++||++.+| -+ |.+|| ++.|++|..+..
T Consensus 5 ~~a-LISVsD--K~~iv~lAk~L~~lGfeI~AT----~G----Tak~L---~e~GI~v~~V~k 53 (513)
T PRK00881 5 KRA-LISVSD--KTGIVEFAKALVELGVEILST----GG----TAKLL---AEAGIPVTEVSD 53 (513)
T ss_pred CEE-EEEEeC--cccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHCCCeeEEeec
Confidence 345 777665 899999999999999999999 78 99999 677999888765
No 170
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=84.44 E-value=8.1 Score=41.38 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=56.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec---CCChhHHHHHHHHHhhcC---CeEEEEEcCCC-CCchhhhh
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA---HRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~---h~~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i~ 344 (438)
++++++... ......++...|...|+.+...+... +++.+...+.++.+.+.+ .+++|++-||+ ..+++++|
T Consensus 211 k~~iV~d~~-v~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA 289 (542)
T PRK14021 211 KVALIHTQP-VQRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA 289 (542)
T ss_pred eEEEEECcc-HHHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence 454555332 23456777888889999765544331 234444454445555554 77999888775 68999998
Q ss_pred c--CCCCCEEEecCC
Q 013695 345 A--RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~--~~~~pVI~~p~~ 357 (438)
+ +--.|+|.+|+.
T Consensus 290 ~~y~rGi~~i~vPTT 304 (542)
T PRK14021 290 ATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHcCCCEEEeCCh
Confidence 6 578999999994
No 171
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=84.23 E-value=3 Score=42.48 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=55.3
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEEE-EecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cch---hhhh
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRI-VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLP---GMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~v-~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~---~~i~ 344 (438)
.++.|+++..... ....++.+.|++.|+.+..-- ...+-+.+.+.+.++.++..+++++|++-||+. ... .+++
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~ 108 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVA 108 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4677777643222 246778888999998764210 112344555667777778889999999998873 333 2222
Q ss_pred cC---------------CCCCEEEecCC
Q 013695 345 AR---------------TPLPVIGVPVR 357 (438)
Q Consensus 345 ~~---------------~~~pVI~~p~~ 357 (438)
.+ ...|+|.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 109 SNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred HCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 11 14699999984
No 172
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=84.21 E-value=3.3 Score=42.45 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC
Q 013695 271 PRIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~iv~gs~-sD~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++.. .......++...|++.|+.+..- ....+=+.+.+.+.++.+++.+++++|++-|++.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 3454444321 12234678888999999876432 1222334466777777788889999999998874
No 173
>PRK10481 hypothetical protein; Provisional
Probab=83.72 E-value=5.8 Score=37.30 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCChhHHHHHHHHHhhcCCe-EEEEEcCCCCCchhhhhcCC
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMVAART 347 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-h~~~~~~~~~~~~~~~~g~~-v~i~~ag~~~~l~~~i~~~~ 347 (438)
..++++++-. .+......+...++|++......|. +.+++.+.+..+++...|++ ++..+.|.+......+...+
T Consensus 129 g~riGVitP~---~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~l 205 (224)
T PRK10481 129 GHQVGVIVPV---EEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKAL 205 (224)
T ss_pred CCeEEEEEeC---HHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHH
Confidence 3578888844 3555555666677799988777664 46666788888888788999 55567777755677777777
Q ss_pred CCCEEE
Q 013695 348 PLPVIG 353 (438)
Q Consensus 348 ~~pVI~ 353 (438)
-+|||-
T Consensus 206 g~PVI~ 211 (224)
T PRK10481 206 DVPVLL 211 (224)
T ss_pred CcCEEc
Confidence 777763
No 174
>PLN02891 IMP cyclohydrolase
Probab=83.17 E-value=1.9 Score=45.29 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=41.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+-+++|. |||.-+.+.++.|.++||++.+| -+ |.++| ++.|++|.-+.-
T Consensus 22 ~krALISV--sDKtgi~~fAk~L~~~gveIiST----gG----Tak~L---~e~Gi~v~~Vsd 71 (547)
T PLN02891 22 KKQALISL--SDKTDLALLANGLQELGYTIVST----GG----TASAL---EAAGVSVTKVEE 71 (547)
T ss_pred ccEEEEEE--ecccCHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeHHh
Confidence 35557764 57899999999999999999999 88 99999 667999887743
No 175
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=82.96 E-value=1.9 Score=42.11 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCHHHH-----HHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc----CCCCCch
Q 013695 270 LPRIGIIMGSDSDLPVM-----KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAHLP 340 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~-----~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~l~ 340 (438)
+.+|++++|++|+.... ..+.+.|+++|++++.-... +...+.+ +..++++++... |....++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~-----~~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~ 75 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG-----EDIAAQL---KELGFDRVFNALHGRGGEDGTIQ 75 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC-----cchHHHh---ccCCCCEEEEecCCCCCCccHHH
Confidence 34799999998775554 88999999999997665211 1233333 445677555443 3445567
Q ss_pred hhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceE-EEEeCCcc
Q 013695 341 GMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVA-TVAINNAT 388 (438)
Q Consensus 341 ~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~-tv~i~~~~ 388 (438)
+++.. .-.|++|.+.....+-.-..+.+.+.-..|||+. +..+.+..
T Consensus 76 ~~le~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~ 123 (304)
T PRK01372 76 GLLEL-LGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE 123 (304)
T ss_pred HHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc
Confidence 66543 3677777643211111112223333346677776 55554443
No 176
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=81.86 E-value=2.2 Score=42.67 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=61.7
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe-EEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013695 276 IMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
++....--+.+...+...+..| +..-++|+|+.+.....+.++++..|++ ++++.+|+++.|.-|+.+++ .||=-+
T Consensus 242 ilv~~~~t~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v 318 (373)
T KOG2835|consen 242 ILVDENTTPVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATV 318 (373)
T ss_pred EEEeecCchhHhhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-cccccc
Confidence 3333444567777777777788 5667789999999999999999999999 88999999999999999998 344333
Q ss_pred cC
Q 013695 355 PV 356 (438)
Q Consensus 355 p~ 356 (438)
++
T Consensus 319 ~v 320 (373)
T KOG2835|consen 319 AV 320 (373)
T ss_pred cc
Confidence 33
No 177
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=80.99 E-value=2.5 Score=33.95 Aligned_cols=31 Identities=6% Similarity=0.159 Sum_probs=25.5
Q ss_pred cCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013695 231 RQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 231 ~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
++||.+ .|++.|+|++||++++++.++.|++
T Consensus 49 ~GGRvl-~v~~~g~tl~eA~~~ay~~i~~I~~ 79 (93)
T PF02843_consen 49 NGGRVL-TVVALGDTLEEAREKAYEAIEKIDF 79 (93)
T ss_dssp -SSEEE-EEEEEESSHHHHHHHHHHHHTTSB-
T ss_pred cCCeEE-EEEEEcCCHHHHHHHHHHHHhccCC
Confidence 345555 5999999999999999999998875
No 178
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=80.96 E-value=4.6 Score=40.25 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=53.9
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHHHcCCcEE-EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh---
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~-~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~--- 344 (438)
.++.|+++..-.. ....++.+.|.+. +.+. ......+.+.+.+.+.++.+++.+++++|++-||+. .....++
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~ 101 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA 101 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence 4676777543222 2455666777665 5442 111234666777777888888889999999998874 3443332
Q ss_pred c----CCCCCEEEecCC
Q 013695 345 A----RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~----~~~~pVI~~p~~ 357 (438)
. ....|+|.+|+.
T Consensus 102 ~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 102 KKLGKKKKPLFIAIPTT 118 (332)
T ss_pred hCCCCCCCCCEEEeCCC
Confidence 2 124799999984
No 179
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=80.49 E-value=64 Score=32.05 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhhccCcc------ccCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDC------QFKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~------~~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
+|.++|..++++++...| -...+++.|+++.-.-++ .+.+..+...+.+.|+.+... ..+.++++..++
T Consensus 29 ~eTr~kV~~a~~elgY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~--~~~~~~~~e~~~ 106 (333)
T COG1609 29 EETREKVLAAIKELGYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLA--NTDDDPEKEREY 106 (333)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--CCCCCHHHHHHH
Confidence 456667766666655432 011134577777654333 455666667788899886555 335588988999
Q ss_pred HHHHhhcCCeEEEEEc-CCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHH
Q 013695 318 ASSAHERGIEIIIAGA-GGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 396 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a-g~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~ 396 (438)
++.+...+++=+|... .....+...+... ..|++-+=... . ..+ +.+|.+||. .++..|++
T Consensus 107 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i~~~~-------------~-~~~--~~~V~~Dn~-~~~~~a~~ 168 (333)
T COG1609 107 LETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVIDRSP-------------P-GLG--VPSVGIDNF-AGAYLATE 168 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEEeCCC-------------c-cCC--CCEEEEChH-HHHHHHHH
Confidence 9988999999555443 3333455555444 67777662211 0 123 334555664 44444444
Q ss_pred HHcC-------------CChHHHHHHHHHHHHHHHH
Q 013695 397 MLGF-------------GDADLRARMQQYMEDMRDD 419 (438)
Q Consensus 397 il~~-------------~~~~~~~~~~~~~~~~~~~ 419 (438)
.|-- ....-.+|++.|+..+.+.
T Consensus 169 ~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~ 204 (333)
T COG1609 169 HLIELGHRRIAFIGGPLDSSASRERLEGYRAALREA 204 (333)
T ss_pred HHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHC
Confidence 4322 1234477788887666443
No 180
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=79.70 E-value=7.6 Score=34.91 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHHH-hhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCC--CCCceEEEEe
Q 013695 308 HRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMP--RGVPVATVAI 384 (438)
Q Consensus 308 h~~~~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~--~gip~~tv~i 384 (438)
..+.++..+..+++ ...|++|+|.-- .-..+|+.++..|||.+|++ ++| +++.++.. .|=.++.|+-
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG----~ta~~lr~~~~iPVV~I~~s-----~~D-il~al~~a~~~~~~Iavv~~ 85 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRG----GTAELLRKHVSIPVVEIPIS-----GFD-ILRALAKAKKYGPKIAVVGY 85 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEH----HHHHHHHCC-SS-EEEE--------HHH-HHHHHHHCCCCTSEEEEEEE
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECC----HHHHHHHHhCCCCEEEECCC-----HhH-HHHHHHHHHhcCCcEEEEec
Confidence 55666788888887 788999999754 46678889999999999986 333 34444332 2222556655
Q ss_pred CCcchHHHHHHHHHcC
Q 013695 385 NNATNAGLLAVRMLGF 400 (438)
Q Consensus 385 ~~~~~Aa~~a~~il~~ 400 (438)
.+-....-...++|++
T Consensus 86 ~~~~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 86 PNIIPGLESIEELLGV 101 (176)
T ss_dssp SS-SCCHHHHHHHHT-
T ss_pred ccccHHHHHHHHHhCC
Confidence 5555445555566664
No 181
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=79.49 E-value=5.6 Score=32.86 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=37.0
Q ss_pred ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHH
Q 013695 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 234 ~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~ 292 (438)
..++++++.|+|+++|++++.+++.++ .|-|-.++.+.+..+...
T Consensus 49 smlAKliv~g~~R~~A~~rl~~aL~e~--------------~i~Gv~TN~~~l~~ll~~ 93 (107)
T smart00878 49 SMIAKLIVHGETREEAIARLRRALDEF--------------RIEGVKTNIPFLRALLRH 93 (107)
T ss_pred hhceEEEEEcCCHHHHHHHHHHHHHhC--------------EEECccCCHHHHHHHhcC
Confidence 456999999999999999999999865 345667888888876655
No 182
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=79.47 E-value=5.9 Score=40.26 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=59.8
Q ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----Cchhhhh
Q 013695 271 PRIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~-sD~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~ 344 (438)
.++.||+... .....+.++.+.|+..|+++... -...+=+-+.+.+-++.+++.+++.+|+.-|||. -+..++.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 4676777543 44678999999999999765332 1223555556666777889999999999999984 2333333
Q ss_pred cCC---------------CCCEEEecCC
Q 013695 345 ART---------------PLPVIGVPVR 357 (438)
Q Consensus 345 ~~~---------------~~pVI~~p~~ 357 (438)
.+. ..|+|.+|+.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 110 ENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred hCCchhhhhcccccccCCCCCEEEecCC
Confidence 322 1799999984
No 183
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=78.40 E-value=4.9 Score=33.18 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=38.9
Q ss_pred ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHH
Q 013695 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKIL 293 (438)
Q Consensus 234 ~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L 293 (438)
..++.+++.|.|+++|++++.++++++ .|.|-.++.+.+..+...-
T Consensus 49 smiaKliv~g~~R~~Ai~~l~~AL~e~--------------~I~Gv~TNi~fl~~ll~~~ 94 (107)
T PF02785_consen 49 SMIAKLIVHGPDREEAIARLRRALAET--------------VIEGVKTNIPFLRALLAHP 94 (107)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHHH--------------EEESSSHSHHHHHHHHTSH
T ss_pred hhhhhheeeccchHHHHHHHHhhcceE--------------EEECccCCHHHHHHHhCCc
Confidence 457999999999999999999999875 5677888888888877543
No 184
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=77.86 E-value=7.8 Score=43.97 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=48.3
Q ss_pred CeEEEEEecCCCH-HHHHHHHHHHH--HcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhhh
Q 013695 271 PRIGIIMGSDSDL-PVMKDAAKILT--MFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~-~~~~~~~~~L~--~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~ 344 (438)
.++.|+++..... ....++...|+ ..|+.+..- -...+-+.+.+.+.++.+++.+++++|++-||+. ++...++
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 4677777643322 25667888888 666654321 1223566677888888888899999999998873 4444443
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=77.63 E-value=41 Score=36.02 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCChhHHHHHH-HHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhh
Q 013695 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDS 366 (438)
Q Consensus 288 ~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~ 366 (438)
-+.....+++...+.++ ..+..++..+.+ +.++.+|++|+|.-. +-+.+|..++..|||-+++++ .|=+.+
T Consensus 28 ~~~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~dviIsrG----~ta~~i~~~~~iPVv~i~~s~--~Dil~a 99 (538)
T PRK15424 28 LFRDISLEFDHLANITP--IQLGFEKAVTYIRKRLATERCDAIIAAG----SNGAYLKSRLSVPVILIKPSG--FDVMQA 99 (538)
T ss_pred HHHHHHHhcCCCceEEe--hhhhHHHHHHHHHHHHhhCCCcEEEECc----hHHHHHHhhCCCCEEEecCCH--hHHHHH
Confidence 33445556776655553 356677777877 446777899988643 356678889999999999862 233333
Q ss_pred HHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013695 367 LLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 367 l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~--------~~~~~~~~~~~~~ 414 (438)
|...-..+. .++.|+-.+....+-.-.++|.+. ..+++..+++.+.
T Consensus 100 l~~a~~~~~--~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 100 LARARKLTS--SIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred HHHHHhcCC--cEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 322222233 266666556666666666666653 3355555555444
No 186
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=76.88 E-value=36 Score=28.13 Aligned_cols=55 Identities=31% Similarity=0.374 Sum_probs=41.0
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~ 358 (438)
-+-+.|-.|...++.+.++.++++|++++...... .|..+... ...++|-+|...
T Consensus 46 l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~-~~~~~~~~p~~~ 100 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGG--KLLEMARE-HGVPVIIIPKGL 100 (119)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHH-cCCcEEECCCCC
Confidence 45567889999999999999999999876655422 47776443 377999998753
No 187
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=76.36 E-value=14 Score=37.71 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=55.6
Q ss_pred CeEEEEEecCCCH---HHHHHHHHHHHHcCCcEE--EEE---E---ecCCChhHHHHHHHHHhhcCCe---EEEEEcCCC
Q 013695 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE--VRI---V---SAHRTPDLMFSYASSAHERGIE---IIIAGAGGA 336 (438)
Q Consensus 271 ~~v~iv~gs~sD~---~~~~~~~~~L~~~G~~~~--~~v---~---s~h~~~~~~~~~~~~~~~~g~~---v~i~~ag~~ 336 (438)
.++.||+...-.. .....+.+.|...|+++. ..+ . ..+-+++.+.+..+.+.+.+++ ++|++-||+
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 5677777432221 234567777877887653 222 1 1122235566777777777777 999998876
Q ss_pred -CCchhhhhc--CCCCCEEEecCC
Q 013695 337 -AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 337 -~~l~~~i~~--~~~~pVI~~p~~ 357 (438)
-.+++.++. +.-.|.|.+|+.
T Consensus 123 v~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 123 VLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC
Confidence 588888875 345799999984
No 188
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=76.31 E-value=14 Score=37.43 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=56.5
Q ss_pred CeEEEEEecCCCH---HHHHHHHHHHHHcCCcEE--EEE----Ee-cCCC-hhHHHHHHHHHhhcCCe---EEEEEcCCC
Q 013695 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE--VRI----VS-AHRT-PDLMFSYASSAHERGIE---IIIAGAGGA 336 (438)
Q Consensus 271 ~~v~iv~gs~sD~---~~~~~~~~~L~~~G~~~~--~~v----~s-~h~~-~~~~~~~~~~~~~~g~~---v~i~~ag~~ 336 (438)
.++.|++...-.. .....+...|...|+++. ..+ .+ .+++ ++.+.+..+.+.+.|++ ++|+.-||+
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 4676777443222 223666677777785542 222 11 2344 35566677777788887 999988876
Q ss_pred -CCchhhhhc--CCCCCEEEecCC
Q 013695 337 -AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 337 -~~l~~~i~~--~~~~pVI~~p~~ 357 (438)
..+++++|+ +--.|.|.+|+.
T Consensus 111 v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 688999886 446899999985
No 189
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=76.05 E-value=14 Score=28.46 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=40.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..++.+...+.+++..|...|+.++.... .+++.+-.+ .+...|++.++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~---~a~~~g~~~~iiig 59 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIR---EAQLQKIPYILVVG 59 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHH---HHHHcCCCEEEEEC
Confidence 3556666677889999999999999999877532 344444444 44778999666654
No 190
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=74.42 E-value=10 Score=29.78 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 273 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 273 v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|+|+..+. +..+.+.+++..|...|+.++... + ++ .+.+-++.+...|++..+++.
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~---~~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DK---SLGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SS---THHHHHHHHHHTTESEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CC---chhHHHHHHhhcCCeEEEEEC
Confidence 45666666 457788999999999998887773 2 23 355566677888999555543
No 191
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=73.72 E-value=16 Score=35.87 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCh-------hHHHHHHHHHhh-cCCeEEEEEcCCCCCchhhhhcCC----CCCE
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTP-------DLMFSYASSAHE-RGIEIIIAGAGGAAHLPGMVAART----PLPV 351 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~-------~~~~~~~~~~~~-~g~~v~i~~ag~~~~l~~~i~~~~----~~pV 351 (438)
...+++++.++..|.+-++-..+- .+| +-..++...++. -.++.++++.|.....+|++.+.. ..+|
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~GG-~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~V 210 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPEGG-SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEV 210 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEeccCC-cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCce
Confidence 556666667777776644433222 222 233444444443 457778888888888999999887 8899
Q ss_pred EEecCCC
Q 013695 352 IGVPVRA 358 (438)
Q Consensus 352 I~~p~~~ 358 (438)
|+||++.
T Consensus 211 iG~~v~~ 217 (323)
T COG2515 211 IGIDVSA 217 (323)
T ss_pred EEEeecC
Confidence 9999974
No 192
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=72.74 E-value=92 Score=29.98 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=72.6
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC---Cchhhhh
Q 013695 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA---HLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~---~l~~~i~ 344 (438)
+.|+++.-..++ ...+..+-+.+.+.||.+-. +....+++.- ++++.+.++.++=+|.. +... ++..+..
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l--~~t~~~~~~e-~~i~~l~~~~vDGiI~~-s~~~~~~~l~~~~~ 77 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLL--CNTGDDEEKE-EYIELLLQRRVDGIILA-SSENDDEELRRLIK 77 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEE--EEETTTHHHH-HHHHHHHHTTSSEEEEE-SSSCTCHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEE--ecCCCchHHH-HHHHHHHhcCCCEEEEe-cccCChHHHHHHHH
Confidence 456777765554 23444455677788887644 3446777776 89988899999955544 3332 4444444
Q ss_pred cCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcC---CC-----------hHHHHHHH
Q 013695 345 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF---GD-----------ADLRARMQ 410 (438)
Q Consensus 345 ~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~---~~-----------~~~~~~~~ 410 (438)
. ..|||-+=.. .++ +.++|+..++ -..|+..|.+-|-- .+ ..-.+|++
T Consensus 78 ~--~iPvV~~~~~---~~~----------~~~~~~V~~D---~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~ 139 (279)
T PF00532_consen 78 S--GIPVVLIDRY---IDN----------PEGVPSVYID---NYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQ 139 (279)
T ss_dssp T--TSEEEEESS----SCT----------TCTSCEEEEE---HHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHH
T ss_pred c--CCCEEEEEec---cCC----------cccCCEEEEc---chHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHH
Confidence 3 6788876321 111 2456666554 45666666665432 12 22456666
Q ss_pred HHHHHHHH
Q 013695 411 QYMEDMRD 418 (438)
Q Consensus 411 ~~~~~~~~ 418 (438)
.|+..+.+
T Consensus 140 Gy~~Al~~ 147 (279)
T PF00532_consen 140 GYRDALKE 147 (279)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67665543
No 193
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=72.49 E-value=84 Score=29.34 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCC--CHHHHHHHHHHHHHcCCcEEEEEEe-cCCChhHHHHHHHHH
Q 013695 245 SMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYASSA 321 (438)
Q Consensus 245 ~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~s--D~~~~~~~~~~L~~~G~~~~~~v~s-~h~~~~~~~~~~~~~ 321 (438)
++-.++..+..++..-+ .++..-+++++.||+- +...+...++.|++.++.++.--.+ +.-.++.+.+|+...
T Consensus 86 ~~~~~i~iA~lalkhRq----nk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~ 161 (259)
T KOG2884|consen 86 NFMTGIQIAQLALKHRQ----NKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDAL 161 (259)
T ss_pred cHHHHHHHHHHHHHhhc----CCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHh
Confidence 45578888888877543 2333457778888742 3447888999999999998866555 333457777888655
Q ss_pred h
Q 013695 322 H 322 (438)
Q Consensus 322 ~ 322 (438)
.
T Consensus 162 N 162 (259)
T KOG2884|consen 162 N 162 (259)
T ss_pred c
Confidence 3
No 194
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=72.14 E-value=72 Score=28.41 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcE---------------EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPH---------------EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~---------------~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
++.|..+....+......|..+|.++ -+-+.|..|...++.+.++.+++.|++++....-..+.|
T Consensus 37 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 37 FVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred EEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 44444444555555555555555543 244577888889999999999999999765554333334
Q ss_pred hhhhhcCCCCCEEEecCCC
Q 013695 340 PGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 340 ~~~i~~~~~~pVI~~p~~~ 358 (438)
... ...++-+|...
T Consensus 117 a~~-----ad~~l~~~~~~ 130 (179)
T cd05005 117 AKL-----ADVVVVIPAAT 130 (179)
T ss_pred HHh-----CCEEEEeCCcc
Confidence 332 34577788754
No 195
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=70.84 E-value=53 Score=27.16 Aligned_cols=52 Identities=21% Similarity=0.128 Sum_probs=32.1
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-+.|..|.+..+.+.++.++.+|++++.+.....+.+.. ...-+|-+|..
T Consensus 63 ~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~-----~~d~~i~~~~~ 114 (139)
T cd05013 63 VVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAK-----LADIVLLVSSE 114 (139)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHH-----hcCEEEEcCCC
Confidence 34456677777778888888888888865554433333333 23356666664
No 196
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=70.08 E-value=52 Score=29.28 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=52.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcE---------------EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPH---------------EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~---------------~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
++| ++.|.......+......|..+|..+ -+-+.|..|....+.+.++.++++|++++....-.
T Consensus 31 ~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 31 KRI-FVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred CEE-EEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 344 44444444556666666666666543 24457778888999999999999999976665534
Q ss_pred CCCchhhhhcCCCCCEEEecCCC
Q 013695 336 AAHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 336 ~~~l~~~i~~~~~~pVI~~p~~~ 358 (438)
.+.|... ..-++-+|...
T Consensus 110 ~s~la~~-----ad~~l~~~~~~ 127 (179)
T TIGR03127 110 ESTLGKL-----ADVVVEIPAAT 127 (179)
T ss_pred CCchHHh-----CCEEEEeCCcc
Confidence 4444443 34567777643
No 197
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=70.03 E-value=30 Score=34.85 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=54.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|++...-.......+.+.|. ++.+ .+.+ .+.+.+.+.+.++.+.+.|+ +++|++-||+ -.+++++
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~~~--~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v 95 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AAPV--IAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV 95 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CCeE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 356677744333323344444443 4433 2322 47788888888888888888 6999998876 5888888
Q ss_pred hc--CCCCCEEEecCC
Q 013695 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVI~~p~~ 357 (438)
|+ .--.|.|.+|+.
T Consensus 96 A~~~~rgi~~i~iPTT 111 (346)
T cd08196 96 ASIYMRGVSWSFVPTT 111 (346)
T ss_pred HHHHHcCCCeEEeccc
Confidence 74 345599999974
No 198
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.00 E-value=40 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=37.7
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-+.|..|...++.+.++.++++|++|+.......+-|... ..-+|-+|..
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~~ 101 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKL-----SDVVLDLPVE 101 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh-----CCEEEECCCC
Confidence 455678899999999999999999999887776555555543 3345666653
No 199
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=69.86 E-value=11 Score=38.05 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred CeEEEEEecCCC-HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcC--CeEEEEEcCCCC-CchhhhhcC
Q 013695 271 PRIGIIMGSDSD-LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAA-HLPGMVAAR 346 (438)
Q Consensus 271 ~~v~iv~gs~sD-~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g--~~v~i~~ag~~~-~l~~~i~~~ 346 (438)
.++.|+++.... .....++...|.+..+.+.-. ...+-+.+.+.+..+.+++.+ ++++|++-||+. .....++..
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~~~~~~~~-v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGRLAALIDD-VAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccCcEEEeCC-CCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 467677754321 233445555554322111111 223555566666666666656 888998888773 333232221
Q ss_pred ----------------------CCCCEEEecCC
Q 013695 347 ----------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 ----------------------~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT 135 (355)
T TIGR03405 103 LRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC
Confidence 34799999984
No 200
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=69.56 E-value=19 Score=35.09 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCcE---EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC-CCEEEecC
Q 013695 283 LPVMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP-LPVIGVPV 356 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~---~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~-~pVI~~p~ 356 (438)
.+......+.|++.|+.. +..+.++++++.++.++++++.....++++++...+ .-.+...... .||+-+-+
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~a--a~~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPA--AQALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHH--HHHHHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHH--HHHHHHhcCCCcEEEEEec
Confidence 455666678888899875 667778899999999999888887788777764222 2223334444 79987766
No 201
>PRK11914 diacylglycerol kinase; Reviewed
Probab=69.37 E-value=30 Score=33.87 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=50.7
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CCCCEEEe
Q 013695 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGV 354 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVI~~ 354 (438)
+|+........++.+.|++.|+++..... .+ +....++.+++...+.+++| ++|+.+.+-.++.+. +..|+--+
T Consensus 19 sG~g~~~~~~~~~~~~l~~~g~~~~~~~t--~~-~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l~~~~~~lgii 94 (306)
T PRK11914 19 SGHGAAPHAAERAIARLHHRGVDVVEIVG--TD-AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVLAGTDIPLGII 94 (306)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEEe--CC-HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHhccCCCcEEEE
Confidence 34444556777888899999998765432 22 55667777776667787655 567787766666553 34555556
Q ss_pred cCCC
Q 013695 355 PVRA 358 (438)
Q Consensus 355 p~~~ 358 (438)
|.++
T Consensus 95 P~GT 98 (306)
T PRK11914 95 PAGT 98 (306)
T ss_pred eCCC
Confidence 7654
No 202
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=69.22 E-value=83 Score=30.49 Aligned_cols=105 Identities=6% Similarity=0.077 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 248 LVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 248 ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
+.++|..++++++...|. ...++..|+++....++ ......+.+.+.+.|+.+.. .....++++..+++
T Consensus 28 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~ 105 (327)
T PRK10423 28 AITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVL--CNTEGDEQRMNRNL 105 (327)
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHH
Confidence 455555555555443210 01123567777643222 34455566778889987654 34466777777888
Q ss_pred HHHhhcCCeEEEEEcCC-CCCchhhhhcCCCCCEEEe
Q 013695 319 SSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 319 ~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVI~~ 354 (438)
+.+...+++-+|+.... +......+......|||-+
T Consensus 106 ~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i 142 (327)
T PRK10423 106 ETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMM 142 (327)
T ss_pred HHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEE
Confidence 88888889966654322 2222333333235688766
No 203
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=69.17 E-value=36 Score=33.16 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC------CCCEEEec
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART------PLPVIGVP 355 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~------~~pVI~~p 355 (438)
......++.+.|.+.|++++.......+ ...++.+++...+.++++ ++|+.+.+-.++.+.. ..|+--+|
T Consensus 12 ~~~~~~~~~~~l~~~g~~~~v~~t~~~~---~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP 87 (293)
T TIGR03702 12 DNEDVREAVGDLRDEGIQLHVRVTWEKG---DAQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDAAPALGLLP 87 (293)
T ss_pred chhHHHHHHHHHHHCCCeEEEEEecCCC---CHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCCCCcEEEEc
Confidence 4446667778899999997765433223 344455555556777555 6688887777776652 23566677
Q ss_pred CCC
Q 013695 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
.++
T Consensus 88 ~GT 90 (293)
T TIGR03702 88 LGT 90 (293)
T ss_pred CCc
Confidence 754
No 204
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=69.03 E-value=13 Score=29.16 Aligned_cols=57 Identities=14% Similarity=-0.100 Sum_probs=39.1
Q ss_pred eEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 272 RIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|+|+..++ .+...+.+++..|...|+.++.... .+ .+.+-++.++..|++.++++.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~---~l~k~i~~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NE---RPGVKFADADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CC---CcccchhHHHhcCCCEEEEEC
Confidence 466777665 4677889999999999999877621 22 344445556788999555543
No 205
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=68.76 E-value=18 Score=36.31 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=49.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhc---CCeEEEEEcCCCC-Cchhhhhc-
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHER---GIEIIIAGAGGAA-HLPGMVAA- 345 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~---g~~v~i~~ag~~~-~l~~~i~~- 345 (438)
+++|+++. +-+. .++.+.|+..|+.+..- -...+=+.+.+.+..+.+++. +++++|++-|++. ...-.++-
T Consensus 27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~ 103 (347)
T cd08184 27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM 103 (347)
T ss_pred eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 45465632 2222 56777788888875432 122344445566666666766 8999999998873 22222221
Q ss_pred -----------------CCCCCEEEecCC
Q 013695 346 -----------------RTPLPVIGVPVR 357 (438)
Q Consensus 346 -----------------~~~~pVI~~p~~ 357 (438)
....|+|.+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~PlIaVPTT 132 (347)
T cd08184 104 LTNPGSAEDYQGWDLVKNPAVYKIGIPTL 132 (347)
T ss_pred HhCCCCHHHhcccccccCCCCcEEEEeCC
Confidence 124689999984
No 206
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=68.18 E-value=66 Score=34.36 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCChhHHHHHH-HHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCC--ceEEEEe
Q 013695 308 HRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGV--PVATVAI 384 (438)
Q Consensus 308 h~~~~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gi--p~~tv~i 384 (438)
-++.++..+.+ +.+..+|++|+|.-. +-+.+|...+..|||-++++ |+| +++.+.-..+. .++.|+-
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG----~ta~~i~~~~~iPVv~i~~s-----~~D-il~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG----SNGAYLKSRLSLPVIVIKPT-----GFD-VMQALARARRIASSIGVVTH 105 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc----hHHHHHHHhCCCCEEEecCC-----hhh-HHHHHHHHHhcCCcEEEEec
Confidence 45666677777 446677899988643 35677888999999999986 334 44444332221 3667766
Q ss_pred CCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013695 385 NNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 385 ~~~~~Aa~~a~~il~~~--------~~~~~~~~~~~~~ 414 (438)
.+-...+-.-..+|.+. ..++...+++.+.
T Consensus 106 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 106 QDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred CcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 66666666666676653 2345555554443
No 207
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=67.89 E-value=58 Score=28.98 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCChhHHHHHHHHHhhcCCeEE
Q 013695 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-h~~~~~~~~~~~~~~~~g~~v~ 329 (438)
+.++|.|++|+..+=....-+++.|...|+++.+-...- .+..+.....++.+++-|.+++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 457899999999999999999999999999987744432 3445566667777787776554
No 208
>PRK13054 lipid kinase; Reviewed
Probab=67.63 E-value=51 Score=32.19 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC----C--CCEEEec
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART----P--LPVIGVP 355 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~----~--~pVI~~p 355 (438)
-.....++.+.|.+.|++++..... .+....++.+++...+.++++ ++|+.+.+-.++.+.. . .|+--+|
T Consensus 16 ~~~~~~~~~~~l~~~g~~~~v~~t~---~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~~~~~~~~~~lgiiP 91 (300)
T PRK13054 16 GNEELREAVGLLREEGHTLHVRVTW---EKGDAARYVEEALALGVATVI-AGGGDGTINEVATALAQLEGDARPALGILP 91 (300)
T ss_pred chHHHHHHHHHHHHcCCEEEEEEec---CCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHHhhccCCCCcEEEEe
Confidence 3456777788899999988765433 233345556555556777655 6688888888877632 2 2444567
Q ss_pred CCC
Q 013695 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
.++
T Consensus 92 ~GT 94 (300)
T PRK13054 92 LGT 94 (300)
T ss_pred CCc
Confidence 653
No 209
>PRK05849 hypothetical protein; Provisional
Probab=67.33 E-value=1.7e+02 Score=32.85 Aligned_cols=143 Identities=12% Similarity=0.135 Sum_probs=80.5
Q ss_pred CHHHHHHHHHhh--CCcEEEEecCCC-----CCCcCcE--Ee--C--CHHHHHHHHHHhc-C----CCCcEEEeeccCCc
Q 013695 5 DLESAWRAGKQF--GYPLMVKSKRLA-----YDGRGNA--VA--K--SEEELSSAITALG-G----FDRGLYVEKWAPFV 66 (438)
Q Consensus 5 s~ee~~~~~~~i--gyPvVvKP~~~g-----~~g~Gv~--iv--~--~~eel~~~~~~~~-~----~~~~~lvEe~I~g~ 66 (438)
+.+.+.+.+... +-|++|+.+..+ ++.-|.+ +. . +.+++..++.... + ....++||+.+.+
T Consensus 41 ~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~- 119 (783)
T PRK05849 41 NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGTSKDDEILVQPMLED- 119 (783)
T ss_pred CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCCCCCCeEEEEeCccC-
Confidence 445555555432 569999987522 1223443 22 2 2347888877653 1 2245999999973
Q ss_pred eeEEEEEE-Eec-CCe---EEEEe---eeeeEEecCee---eEEE---cCCCCCHHHHHHHHHHHHHHHHHcCceeEEEE
Q 013695 67 KELAVIVV-RGR-DKS---ILCYP---VVETIHKENIC---HIVK---APAAVPWKISELATDVAHKAVSSLEGAGIFAV 132 (438)
Q Consensus 67 ~E~sv~~~-~~~-~G~---~~~~~---~~e~~~~~g~~---~~~~---~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~v 132 (438)
...+-.++ +|. +|+ +..|. ..+.+. +|.. ...+ .+..++++..+++.+++.++-+.+|. -+..|
T Consensus 120 ~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VV-sG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDI 197 (783)
T PRK05849 120 IVLSGVAMSRDPESGAPYYVINYDESGSTDSVT-SGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGC-DFLDI 197 (783)
T ss_pred CCceEEEEECCCCCCCCceEEEEcCCCCCccee-cccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCC-CCeee
Confidence 33443333 221 121 11111 111111 1211 0011 12347788888999999888877763 38899
Q ss_pred EEEEeCCCcEEEEEEcCC
Q 013695 133 ELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 133 e~~~~~~g~~~viEiNpR 150 (438)
||.++++|++|++-+=|-
T Consensus 198 Efaid~~g~L~lLQ~RPi 215 (783)
T PRK05849 198 EFAIDEKEELYILQVRPI 215 (783)
T ss_pred EEEEccCCEEEEEEccCC
Confidence 999987899999887553
No 210
>PRK15138 aldehyde reductase; Provisional
Probab=66.50 E-value=15 Score=37.49 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=38.9
Q ss_pred CeEEEEEecCCC--HHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC
Q 013695 271 PRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 271 ~~v~iv~gs~sD--~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
.++.|+++..+- .....++...|. |+.+..- -...+=+.+.+.+..+.+++.+++++|++-||+.
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 356677654332 223455566664 5543221 1223455567777777778889999999888763
No 211
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=65.22 E-value=1.1e+02 Score=32.28 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=69.9
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEE----EecCCCHHHHH-HHHHHHHHcCCcEEEEEEecCCC
Q 013695 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGII----MGSDSDLPVMK-DAAKILTMFSVPHEVRIVSAHRT 310 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv----~gs~sD~~~~~-~~~~~L~~~G~~~~~~v~s~h~~ 310 (438)
-..+...-.+.+.+..-.+...+.++.. ...+++.|+ +|..+...... .+...|+..|+++++......
T Consensus 81 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~----~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-- 154 (481)
T PLN02958 81 RKDFVFEPLSDESRRLWCQKLRDYLDSL----GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-- 154 (481)
T ss_pred eeeEEEeCCCHHHHHHHHHHHHHHHhhc----cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc--
Confidence 3445556667888888777777766532 122455455 44444445544 466699999999877654322
Q ss_pred hhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC---------CCCEEEecCCC
Q 013695 311 PDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART---------PLPVIGVPVRA 358 (438)
Q Consensus 311 ~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~---------~~pVI~~p~~~ 358 (438)
....++.+++...+++.+|+ .||.+-+-.++.+.- ..|+-=+|.++
T Consensus 155 -ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGT 209 (481)
T PLN02958 155 -LHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGT 209 (481)
T ss_pred -cHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHHHhhCccccccccCceEEecCcC
Confidence 33455666655567776654 578877777776653 24544566654
No 212
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=64.51 E-value=83 Score=32.77 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE--cCCCCC-chhhhhcCCCCCEE--EecCCC
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG--AGGAAH-LPGMVAARTPLPVI--GVPVRA 358 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~--ag~~~~-l~~~i~~~~~~pVI--~~p~~~ 358 (438)
....++.+.|++.|+++..-- ..-.++++..+..+.++..+++.+|+. .++.++ +...+ .....||+ ++|...
T Consensus 23 ~~~~~~~~~l~~~~~~vv~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~-~~~~~Pvll~a~~~~~ 100 (452)
T cd00578 23 EYAREVADLLNELPVEVVDKP-EVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGL-SELRKPVLLLATQFNR 100 (452)
T ss_pred HHHHHHHHHHhcCCceEEecC-cccCCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHH-HhcCCCEEEEeCCCCC
Confidence 344445555555555432110 011455666666666666666644442 233333 22222 23355665 444321
Q ss_pred C------CCCChhhHHHhhcC--CCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 013695 359 S------ALDGLDSLLSIVQM--PRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYME 414 (438)
Q Consensus 359 ~------~~~g~~~l~s~~~~--~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~ 414 (438)
. ..+++-++++.... -.|+|...|. + ...|+.++++|+.+..
T Consensus 101 ~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~---g-----------~~~d~~~~~~i~~~~r 150 (452)
T cd00578 101 EIPDFMNLNQSACGLREFGNILARLGIPFKVVY---G-----------HWKDEDVLRKIESWAR 150 (452)
T ss_pred CCCchhhhhcchhhhHHHHHHHHHcCCceeEEE---C-----------CCCCHHHHHHHHHHHH
Confidence 1 12333333322222 5678876443 1 2245667777666553
No 213
>PRK13055 putative lipid kinase; Reviewed
Probab=63.67 E-value=42 Score=33.45 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=48.5
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC---CCCEEE
Q 013695 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART---PLPVIG 353 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~---~~pVI~ 353 (438)
+|+.+......++.+.|.+.|+++......-+ +....++.+++...+++++| +.||.+.+-.++.+.- ..|.++
T Consensus 13 sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lg 89 (334)
T PRK13055 13 SGQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMA 89 (334)
T ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEE
Confidence 34444456677888999999998765433212 22334455555566777665 4578888877776643 234455
Q ss_pred -ecCCC
Q 013695 354 -VPVRA 358 (438)
Q Consensus 354 -~p~~~ 358 (438)
+|.++
T Consensus 90 iiP~GT 95 (334)
T PRK13055 90 IIPAGT 95 (334)
T ss_pred EECCCc
Confidence 67654
No 214
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=63.16 E-value=52 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHH--cCCcEE-EEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 281 SDLPVMKDAAKILTM--FSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 281 sD~~~~~~~~~~L~~--~G~~~~-~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+-.+....+.+.|+. .|.+++ .+|-++.=.|-...+.+ ++.+++.+|+
T Consensus 10 ~~~~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~---~~~~~DaVIa 60 (151)
T TIGR01506 10 ARYDMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLL---EEEGCEMVIT 60 (151)
T ss_pred hhhhHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHH---hcCCCCEEEE
Confidence 334556677788888 666655 55555555455444444 3445777775
No 215
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.15 E-value=31 Score=28.74 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=39.9
Q ss_pred CeEEEEEec--CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|+..+ +.....+.+++..|...|+.++.... + .+.+-++.++..|++..+.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~---sl~kqlk~A~k~g~~~~iiiG 85 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---G---SIGRRYARQDEIGTPFCVTVD 85 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---C---CHHHHHHHhHhcCCCEEEEEC
Confidence 456566655 55677888999999999999888731 3 355555566888999555554
No 216
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=63.09 E-value=29 Score=33.66 Aligned_cols=77 Identities=21% Similarity=0.423 Sum_probs=47.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC---CCCCEEE-
Q 013695 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR---TPLPVIG- 353 (438)
Q Consensus 278 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~---~~~pVI~- 353 (438)
|+........++.+.|.+.|+++........+.. .++++...+.+.++++ +.||.+.+-.++.+. ...|.++
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDA---ARYVEEARKFGVDTVI-AGGGDGTINEVVNALIQLDDIPALGI 88 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEecCcccH---HHHHHHHHhcCCCEEE-EECCCChHHHHHHHHhcCCCCCcEEE
Confidence 4444456677888899999998765432212122 2334444445677655 568888888877653 3457787
Q ss_pred ecCCC
Q 013695 354 VPVRA 358 (438)
Q Consensus 354 ~p~~~ 358 (438)
+|.++
T Consensus 89 iP~Gt 93 (293)
T TIGR00147 89 LPLGT 93 (293)
T ss_pred EcCcC
Confidence 88753
No 217
>PRK13337 putative lipid kinase; Reviewed
Probab=62.61 E-value=40 Score=33.00 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC---CC-CEEEecCCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART---PL-PVIGVPVRA 358 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~---~~-pVI~~p~~~ 358 (438)
.....++.+.|.+.|++++.......+. ..++.+++...+.++++ +.||.+.+-.++.+.. .. |+--+|.++
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~---a~~~a~~~~~~~~d~vv-v~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGD---ATLAAERAVERKFDLVI-AAGGDGTLNEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCC---HHHHHHHHHhcCCCEEE-EEcCCCHHHHHHHHHhhCCCCCcEEEECCcC
Confidence 4556677888999999977655443443 44445555566777644 5688888888877532 23 444456553
No 218
>PRK12757 cell division protein FtsN; Provisional
Probab=62.07 E-value=59 Score=31.18 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=49.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE-------E-EecCCChhHHHHHHHHHhhcCCe-EEEEEcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-------I-VSAHRTPDLMFSYASSAHERGIE-IIIAGAGG 335 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~-------v-~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag~ 335 (438)
+...|=.|+.++...++.+...|...|++...+ | ++...+.+...++++.++..|+. ++++.+||
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 445466899999999999999999999863322 1 45566778888888888888886 88877764
No 219
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=61.72 E-value=40 Score=33.37 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=58.5
Q ss_pred eEEEEEec--CCCHHHHHHHHHHHHHcCC-cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013695 272 RIGIIMGS--DSDLPVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 272 ~v~iv~gs--~sD~~~~~~~~~~L~~~G~-~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
+|+|...- ++--.....+.+.|++.|+ ++...+-++|+++.....+.+++..++-+|+++.++-+ --.+++.-++
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~--Aq~~~s~~~~ 109 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPA--AQALVSATKT 109 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHH--HHHHHHhcCC
Confidence 45555432 3334555667789999999 67777889999999999999999888888888876432 3345555566
Q ss_pred CCEEEe
Q 013695 349 LPVIGV 354 (438)
Q Consensus 349 ~pVI~~ 354 (438)
.||+=.
T Consensus 110 iPVV~a 115 (322)
T COG2984 110 IPVVFA 115 (322)
T ss_pred CCEEEE
Confidence 899844
No 220
>PRK15482 transcriptional regulator MurR; Provisional
Probab=61.53 E-value=1.3e+02 Score=28.93 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=33.5
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
+-+.|..|...++.+.++.++++|++++.+.....+.|... ..-+|-+|.+
T Consensus 186 ~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~-----ad~~l~~~~~ 236 (285)
T PRK15482 186 QIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRL-----AHFTLDTVSG 236 (285)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHh-----CCEEEEcCCC
Confidence 44567788888888888888888988666554333344332 3456666654
No 221
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=59.15 E-value=1.9e+02 Score=28.52 Aligned_cols=135 Identities=10% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHHHHHHhhCCcEEEEecC----CCC--CCcCcEEeCCHHHHHHHHHHh--------------cC-------CCCcEEE
Q 013695 7 ESAWRAGKQFGYPLMVKSKR----LAY--DGRGNAVAKSEEELSSAITAL--------------GG-------FDRGLYV 59 (438)
Q Consensus 7 ee~~~~~~~igyPvVvKP~~----~g~--~g~Gv~iv~~~eel~~~~~~~--------------~~-------~~~~~lv 59 (438)
+++.++++++|--|+.|=.. ++. ...+...|++..|+.-.+..- .. .+..+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 45778888999889999532 110 112445889988876555431 01 1245777
Q ss_pred eeccCC--ceeEEEEEEEecCCeEEEEeeeeeEEecCeeeEEEcCC--CCCHHHHHHHHHHH-HHHHHHcCceeEEEEEE
Q 013695 60 EKWAPF--VKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPA--AVPWKISELATDVA-HKAVSSLEGAGIFAVEL 134 (438)
Q Consensus 60 Ee~I~g--~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~~~~~~~P~--~l~~~~~~~i~~~a-~~i~~~lg~~G~~~ve~ 134 (438)
-+|.+- ..||.+.+. +++++ ++++... .+.+. ...+++++.|.+.. ..+...+.. .-+-+|+
T Consensus 155 rkw~~l~p~~EFRcFV~---~~~Li--aISQr~~-------~~~~~L~~~~~~I~~~I~~F~~~~I~~~~~~-~~~v~DV 221 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR---NRKLI--AISQRDL-------NYYDFLEELKEEIRSKIQEFFEEHIKPKFPL-DNYVFDV 221 (299)
T ss_pred eccccCCccceEEEEEE---CCEEE--EEecccc-------cccHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEE
Confidence 888764 357777652 34543 3332211 01121 12334444555544 234344543 4467888
Q ss_pred EEeCC-CcEEEEEEcCCCCCC
Q 013695 135 FWTNN-GQILLNEVAPRPHNS 154 (438)
Q Consensus 135 ~~~~~-g~~~viEiNpR~~~~ 154 (438)
.++++ ++++++|+||=...+
T Consensus 222 yi~~~~~~v~LID~NPf~~~T 242 (299)
T PF07065_consen 222 YITRDKDKVWLIDFNPFGPRT 242 (299)
T ss_pred EEcCCCCeEEEEEecCCcccC
Confidence 88887 789999999987533
No 222
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=58.83 E-value=42 Score=25.35 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=38.8
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..++.+...+.+++..|...|+.++....+ +.+ .+.++.++..|++.++...
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~---~~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL---KKQFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH---HHHHHHHHHcCCCEEEEEc
Confidence 35566666667788999999999999988776322 333 4444455778888555543
No 223
>PRK13059 putative lipid kinase; Reviewed
Probab=58.66 E-value=46 Score=32.49 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=44.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC----CCCEEE
Q 013695 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART----PLPVIG 353 (438)
Q Consensus 278 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~----~~pVI~ 353 (438)
|+.+......++.+.|.+.|+++......-+... +...++...+.+++| ++|+.+.+-.++.+.- ..|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi-~~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYIL-IAGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEE-EECCccHHHHHHHHHHhcCCCCcEEE
Confidence 4444456677888899999998664332222222 223344455677554 5688877777765542 356556
Q ss_pred ecCCC
Q 013695 354 VPVRA 358 (438)
Q Consensus 354 ~p~~~ 358 (438)
+|.++
T Consensus 88 iP~GT 92 (295)
T PRK13059 88 LPVGT 92 (295)
T ss_pred ECCCC
Confidence 67654
No 224
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=58.48 E-value=52 Score=30.44 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEec-----------CCCHHHHHHHHHHHHHcCCcE-EEEEEecCC
Q 013695 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS-----------DSDLPVMKDAAKILTMFSVPH-EVRIVSAHR 309 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs-----------~sD~~~~~~~~~~L~~~G~~~-~~~v~s~h~ 309 (438)
.|.+.++-+..+..+++.+.. -...++|+++||+ |......+.++..++..|+++ ..++.
T Consensus 113 Eg~ti~dk~ri~~laaeflrr----~~~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~IL---- 184 (256)
T COG4002 113 EGKTIKDKIRIIELAAEFLRR----TGIEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGIL---- 184 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHH----hCCCcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeeeE----
Confidence 455666666666666665432 1134789999986 344567788999999999885 34432
Q ss_pred ChhHHHHHHHHHhhcCCeEEEEEcCCCCCch
Q 013695 310 TPDLMFSYASSAHERGIEIIIAGAGGAAHLP 340 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 340 (438)
..+++ ++| +|+|++-|-.++|.
T Consensus 185 ----IEeal----kdg-nvIia~dGItGNLi 206 (256)
T COG4002 185 ----IEEAL----KDG-NVIIAVDGITGNLI 206 (256)
T ss_pred ----HHHHh----hcC-CEEEEecCccchhh
Confidence 44555 346 89999988666553
No 225
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=58.08 E-value=31 Score=27.71 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCeEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEE
Q 013695 270 LPRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 270 ~~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
.++|+|+|-++ +.-+.+..+.+.|.++|++++..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence 35676777654 45688889999999999998654
No 226
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=57.97 E-value=58 Score=26.81 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=34.2
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
+-+.|..|...++.+.++.+++.|++++.......+.+... ..-+|-+|.+
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~-----ad~~l~~~~~ 107 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARL-----ADIVLYIPTG 107 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH-----SSEEEEEESS
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh-----CCEEEEecCC
Confidence 55577888888888888888888998754443333333322 2457777775
No 227
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=57.89 E-value=1.2e+02 Score=26.99 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=38.8
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCc---E-EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc----CCCCC
Q 013695 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVP---H-EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAH 338 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~---~-~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~ 338 (438)
-+++|+.+.-.+ ..-...+...|+..|++ + ..+|-++.=.|-...+++ +...++.+|+.. |...|
T Consensus 11 ~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~---~~~~yDaiIaLG~VIrGeT~H 86 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLA---KTGRYAAIVAAALVVDGGIYR 86 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHH---hcCCCCEEEEEEEEEcCCCch
Confidence 488888855333 23345566889999975 2 344555555565555554 334478777643 66665
No 228
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=57.58 E-value=59 Score=32.84 Aligned_cols=144 Identities=17% Similarity=0.303 Sum_probs=86.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCCe---EEEEEcCCC-CCchhhhh
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIE---IIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~~---v~i~~ag~~-~~l~~~i~ 344 (438)
+++|++-..-..-...+....|...|+..+.-++. ..++.+.+.+....+-+.++. .+|+.-|+. ..|.|++|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 67677744333345688888999999987444433 456666666666666666665 777777764 78999988
Q ss_pred c--CCCCCEEEecCC-----CCCCCChh--------hHHHhhcCCCCCceE-----EEEeCCcchHHHH-HHHHHcCCCh
Q 013695 345 A--RTPLPVIGVPVR-----ASALDGLD--------SLLSIVQMPRGVPVA-----TVAINNATNAGLL-AVRMLGFGDA 403 (438)
Q Consensus 345 ~--~~~~pVI~~p~~-----~~~~~g~~--------~l~s~~~~~~gip~~-----tv~i~~~~~Aa~~-a~~il~~~~~ 403 (438)
+ +--.+.|.+|+. .++.+|-. -|+-..-.|.-|=+- |+. ..-..+++. +++.-.+.|+
T Consensus 115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp-~re~~~G~AEvIK~g~I~D~ 193 (360)
T COG0337 115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLP-PRELRAGMAEVIKYGLIADP 193 (360)
T ss_pred HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCC-HHHHHHhHHHHHHHhhhcCH
Confidence 8 466799999986 12222221 123333334432110 111 012344443 3555566899
Q ss_pred HHHHHHHHHHHHH
Q 013695 404 DLRARMQQYMEDM 416 (438)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (438)
.+++.|.+.+.+.
T Consensus 194 ~~f~~Le~~~~~l 206 (360)
T COG0337 194 EFFDWLEENLDAL 206 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999874443
No 229
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=57.39 E-value=1.6e+02 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=28.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS 306 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s 306 (438)
.+|.|++|.-.+=-...-+|+.|...|+++.+-..+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 95 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPK 95 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEEC
Confidence 468888888888888888888888888887665543
No 230
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=57.14 E-value=18 Score=35.40 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCC-----HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe-EEEEEcC---CCCCch
Q 013695 270 LPRIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAG---GAAHLP 340 (438)
Q Consensus 270 ~~~v~iv~gs~sD-----~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag---~~~~l~ 340 (438)
+.+|+|++|+.|. +.-+..+++.|++.|+++..-. .++ . .++..+.....+ ||.+.-| ..+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~--~~~--~---~~~~~l~~~~~d~vf~~lhG~~ge~~~i~ 75 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD--ASG--K---ELVAKLLELKPDKCFVALHGEDGENGRVS 75 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc--CCc--h---hHHHHhhccCCCEEEEeCCCCCCCChHHH
Confidence 3579999998776 4556788899999999864332 222 1 122233344566 6666554 345677
Q ss_pred hhhhcCCCCCEEEecCCCCCCCChhhHH-HhhcCCCCCceE-EEEe
Q 013695 341 GMVAARTPLPVIGVPVRASALDGLDSLL-SIVQMPRGVPVA-TVAI 384 (438)
Q Consensus 341 ~~i~~~~~~pVI~~p~~~~~~~g~~~l~-s~~~~~~gip~~-tv~i 384 (438)
+++.. .-.|++|+.+....+ .+|-.+ ..+-...|||+. +..+
T Consensus 76 ~~le~-~gip~~Gs~~~a~~l-~~DK~~~k~~l~~~gIptp~~~~~ 119 (296)
T PRK14569 76 ALLEM-LEIKHTSSSMKSSVI-TMDKMISKEILMHHRMPTPMAKFL 119 (296)
T ss_pred HHHHH-cCCCeeCCCHHHHHH-HHCHHHHHHHHHHCCCCCCCeEEE
Confidence 77644 457888866532111 222222 223336677776 4433
No 231
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=56.66 E-value=1.6e+02 Score=28.34 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=35.6
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCC
Q 013695 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~ 358 (438)
+-+.|.-|...++.+.++.+++.|++++.+.....+-|... ...+|-+|...
T Consensus 191 ~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~-----ad~~l~~~~~~ 242 (292)
T PRK11337 191 VLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKL-----ADYVICSTAQG 242 (292)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHh-----CCEEEEcCCCC
Confidence 45567778888899999999999998776665444444332 34577777643
No 232
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=55.88 E-value=1.1e+02 Score=29.42 Aligned_cols=41 Identities=12% Similarity=-0.017 Sum_probs=28.7
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchh
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
.+-+.|..|...++.+.++.++++|++|+.......+.+..
T Consensus 178 v~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 178 LLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHH
Confidence 34456778888888888888888888877665544444444
No 233
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=55.67 E-value=19 Score=33.62 Aligned_cols=78 Identities=19% Similarity=0.390 Sum_probs=46.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcE--------EEEEEecCCChhHHHHHH-----HHHhhcCCeEEEE-EcCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPH--------EVRIVSAHRTPDLMFSYA-----SSAHERGIEIIIA-GAGGA 336 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~--------~~~v~s~h~~~~~~~~~~-----~~~~~~g~~v~i~-~ag~~ 336 (438)
.++.|++.-....+.. ...+..+|..- +..|...|+.|++....+ +..++.|.++++. +|||+
T Consensus 110 rrfsViTtt~rs~~il---~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms 186 (230)
T COG4126 110 RRFSVITTTERSRPIL---EELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMS 186 (230)
T ss_pred ceEEEEecCcccHHHH---HHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHH
Confidence 3666777444333333 34455667652 445677788666655433 4457778885554 56666
Q ss_pred CCchhhhhcCCCCCEE
Q 013695 337 AHLPGMVAARTPLPVI 352 (438)
Q Consensus 337 ~~l~~~i~~~~~~pVI 352 (438)
+|.+.+....-.|||
T Consensus 187 -~la~~Lq~~~gvPVI 201 (230)
T COG4126 187 -DLADQLQKAFGVPVI 201 (230)
T ss_pred -HHHHHHHHHhCCCcc
Confidence 677777666666666
No 234
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=55.41 E-value=1.9e+02 Score=27.36 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=72.1
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCc-----ccc-CCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChh
Q 013695 239 ITIVGSSMGLVESRLNSLLKEDSSD-----CQF-KTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPD 312 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~-----~~~-~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~ 312 (438)
|-..+.|.++....+..+....+.+ |+. +......+--+ -.|.+.+.++.+.+++.+.++.+.+ +++-+..
T Consensus 72 vnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~L--l~dp~~l~~iv~av~~~~~PVsvKi-R~~~~~~ 148 (231)
T TIGR00736 72 VNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQEL--LKNKELLKEFLTKMKELNKPIFVKI-RGNCIPL 148 (231)
T ss_pred EEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhh--cCCHHHHHHHHHHHHcCCCcEEEEe-CCCCCcc
Confidence 5667779998888877765533221 101 00000010111 2478899999999998889988874 3344455
Q ss_pred HHHHHHHHHhhcCCeEEEEEcCCCCC------chhhhhcCC-CCCEEEecCCCCCCCChhhHHHhhc
Q 013695 313 LMFSYASSAHERGIEIIIAGAGGAAH------LPGMVAART-PLPVIGVPVRASALDGLDSLLSIVQ 372 (438)
Q Consensus 313 ~~~~~~~~~~~~g~~v~i~~ag~~~~------l~~~i~~~~-~~pVI~~p~~~~~~~g~~~l~s~~~ 372 (438)
.+.++.+.+++.|++.+.+-.+..+. ...-++... ..|||+. ++-.+ .++...++.
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN---GgI~s-~eda~e~l~ 211 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN---NSIDD-IESAKEMLK 211 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE---CCcCC-HHHHHHHHH
Confidence 67788888899999966554322211 122233343 4778874 33332 333455554
No 235
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=55.40 E-value=1.7e+02 Score=27.01 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=29.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
.+|.|++|.-.+=-...-+|++|...|+.+++--.
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~ 84 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLL 84 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEe
Confidence 46989999988899999999999999977766543
No 236
>PRK12361 hypothetical protein; Provisional
Probab=55.38 E-value=1.2e+02 Score=32.39 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CCCCEEEe
Q 013695 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGV 354 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVI~~ 354 (438)
+|+........++.+.|.+. ++++.......+ ...++.+++.+.+.+++| ++||.+.+-.++.+. +..|+--+
T Consensus 253 SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~---~a~~la~~~~~~~~d~Vi-v~GGDGTl~ev~~~l~~~~~~lgii 327 (547)
T PRK12361 253 SGGGKWQEYGEQIQRELKAY-FDLTVKLTTPEI---SAEALAKQARKAGADIVI-ACGGDGTVTEVASELVNTDITLGII 327 (547)
T ss_pred CCCCcHHHHHHHHHHHHhcC-CceEEEECCCCc---cHHHHHHHHHhcCCCEEE-EECCCcHHHHHHHHHhcCCCCEEEe
Confidence 34444456777888888774 666554433223 234555555566777655 468888888887764 33444445
Q ss_pred cCCC
Q 013695 355 PVRA 358 (438)
Q Consensus 355 p~~~ 358 (438)
|.++
T Consensus 328 P~GT 331 (547)
T PRK12361 328 PLGT 331 (547)
T ss_pred cCCc
Confidence 6654
No 237
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=54.64 E-value=1.1e+02 Score=25.19 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=36.0
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
-+-+.|..|...++.+.++.++++|++++.......+.|... ..-+|-+|.
T Consensus 49 ~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~ 99 (126)
T cd05008 49 LVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLARE-----ADYVLYLRA 99 (126)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHh-----CCEEEEecC
Confidence 455678899999999999999999999776665444444433 334666665
No 238
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=54.56 E-value=38 Score=33.97 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCcc
Q 013695 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 388 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~~ 388 (438)
+++.+.+.+++++|- .|.|++ ..-|.|||.+ +..++.+|+.|+.+-|. || |--|.|+.++
T Consensus 184 ~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~f~klda~la~a~~s--IpAvKgve~G~Gf 246 (344)
T cd07304 184 EKMKELIDEAKKEGD-----------SVGGVV----EVVATGVPAGLGSPVFDKLDARLAQALMS--IPAVKGVEIGSGF 246 (344)
T ss_pred HHHHHHHHHHHHcCC-----------CCceEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcch
Confidence 446666666665443 233332 2345677774 44578999989887772 34 4488888877
Q ss_pred hHHH
Q 013695 389 NAGL 392 (438)
Q Consensus 389 ~Aa~ 392 (438)
.+|-
T Consensus 247 ~~a~ 250 (344)
T cd07304 247 EAAR 250 (344)
T ss_pred hhhh
Confidence 6653
No 239
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=53.71 E-value=2.2e+02 Score=27.56 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC--H-HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD--L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD--~-~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..++++++...|. ...++..|++++...++ . .....+.+.+.+.|+.+.. ...+..++...++
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i--~~~~~~~~~~~~~ 107 (329)
T TIGR01481 30 PATRKKVLEVIKRLDYRPNAVARGLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIIL--SNSDEDPEKEVQV 107 (329)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHH
Confidence 4666676666666554320 01124578888754333 1 2233444667778887644 3456677777778
Q ss_pred HHHHhhcCCeEEEEEcC-CCCCchhhhhcCCCCCEEEe
Q 013695 318 ASSAHERGIEIIIAGAG-GAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag-~~~~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++-+|+... ....+...+. ....|||-+
T Consensus 108 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~-~~~iPvV~~ 144 (329)
T TIGR01481 108 LNTLLSKQVDGIIFMGGTITEKLREEFS-RSPVPVVLA 144 (329)
T ss_pred HHHHHhCCCCEEEEeCCCCChHHHHHHH-hcCCCEEEE
Confidence 87777888996665432 1222223333 235788765
No 240
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=53.62 E-value=9.5 Score=35.13 Aligned_cols=40 Identities=38% Similarity=0.574 Sum_probs=19.6
Q ss_pred chhhhhc--CCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013695 339 LPGMVAA--RTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 339 l~~~i~~--~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
|..++.. ..+..|||+|++ .+...--+.|+++ ++|+.|+.
T Consensus 135 ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~-----~vP~I~~~ 177 (198)
T PF02570_consen 135 LLELIEEGGVRPALVIGVPVGFVGAAESKEALMQS-----GVPYITVR 177 (198)
T ss_dssp HHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHS-----TS-EEEES
T ss_pred HHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhC-----CCCEEEEe
Confidence 4445543 467789999996 2222223333333 99999875
No 241
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=53.60 E-value=1.5e+02 Score=29.29 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCC-------CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----
Q 013695 269 VLPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA---- 337 (438)
Q Consensus 269 ~~~~v~iv~gs~s-------D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~---- 337 (438)
+..+|+|++.++. |.. ..-+...|.++|+++.....-.| +++.+.+.++++.++|++++|+..|.+.
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsvg~~D 235 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASVDPDD 235 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCcccCCcc
Confidence 3467888875431 222 22345678999998655433323 3666777777666667898888876653
Q ss_pred CchhhhhcCCC-CCEEEecCC
Q 013695 338 HLPGMVAARTP-LPVIGVPVR 357 (438)
Q Consensus 338 ~l~~~i~~~~~-~pVI~~p~~ 357 (438)
..|..+...-. .-.-++|..
T Consensus 236 ~tp~Ai~~~G~ei~~~Gv~v~ 256 (312)
T cd03522 236 VTPAAIRAAGGEVIRYGMPVD 256 (312)
T ss_pred hHHHHHHhcCceEEEeeeccc
Confidence 45555554421 223366653
No 242
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.54 E-value=75 Score=30.69 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=24.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 289 AAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 289 ~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+.+.+..+|..+.+.+...+.++++-.++++++..++++.+|+..
T Consensus 21 i~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 21 LEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred HHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 334444534444444445566666656666666666666555443
No 243
>PRK10927 essential cell division protein FtsN; Provisional
Probab=53.48 E-value=79 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=50.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE--------EEecCCChhHHHHHHHHHhhcCCe-EEEEEcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR--------IVSAHRTPDLMFSYASSAHERGIE-IIIAGAGG 335 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~--------v~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag~ 335 (438)
++..|=.||.++.+.++.+...|...||+-+.+ .++..-+-++..+.+..+...|+. |++..+|+
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~gG 319 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG 319 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCCC
Confidence 567688999999999999999999999874432 144555677778888888888887 66665553
No 244
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=52.68 E-value=1.1e+02 Score=28.53 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=24.4
Q ss_pred CchhhhhcC--CCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013695 338 HLPGMVAAR--TPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 338 ~l~~~i~~~--~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
.|..++... ....|||+|++ .+...--+.|. ..|||++|+.
T Consensus 147 ~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~-----~~~iP~It~~ 190 (214)
T PRK08286 147 RLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALT-----ESDLPAIAAL 190 (214)
T ss_pred HHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHH-----hCCCCEEEEe
Confidence 455666543 57779999996 22211223222 3589999765
No 245
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.01 E-value=80 Score=29.47 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 287 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 287 ~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..+.+.++++|+.+... ..-..|+...++++.+-.++++.+|+..
T Consensus 19 ~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~~~~~vdgii~~~ 63 (273)
T cd06305 19 AGTKAEAEALGGDLRVY--DAGGDDAKQADQIDQAIAQKVDAIIIQH 63 (273)
T ss_pred HHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34445555566554432 2233455555555554455566555544
No 246
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=51.82 E-value=23 Score=29.11 Aligned_cols=53 Identities=26% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
..+..+.+.+.+.|++++..+...+...+.+.++. ++.+++.++....+...+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCc
Confidence 44555556667788887766544333224444444 666888888877554443
No 247
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=51.67 E-value=1.2e+02 Score=27.13 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=52.4
Q ss_pred CeEEEEEecCCCH------------HHHHHHHHHHHHc-----CCcEEEEEEe-cCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 271 PRIGIIMGSDSDL------------PVMKDAAKILTMF-----SVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~------------~~~~~~~~~L~~~-----G~~~~~~v~s-~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
++|+|...+|... ..++.+++.|++. |-++++-+++ .-+.+.+-.+.-+++++.|+.+.|.+
T Consensus 4 pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~titv 83 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTITV 83 (171)
T ss_dssp -EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEEE
T ss_pred CeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5677777665443 3456667777776 7777666654 44556666777777888888888876
Q ss_pred cCC--CCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcC--CCCCceEEE
Q 013695 333 AGG--AAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQM--PRGVPVATV 382 (438)
Q Consensus 333 ag~--~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~--~~gip~~tv 382 (438)
..- -++..-..+-.+..||.+.-.. ..-|.-.|++.+.- ..|+|..-+
T Consensus 84 tpcWcy~~etmd~~~~~p~aiwgfngt--erPGaVyLaAa~aa~~Q~Gip~f~I 135 (171)
T PF07881_consen 84 TPCWCYGSETMDMDPNTPKAIWGFNGT--ERPGAVYLAAALAAHNQKGIPAFRI 135 (171)
T ss_dssp ESS---HHHHS---TTS-EEEEE---S--SS-HHHHHHHHHHHHHHCT---EEE
T ss_pred EeeeecchhhhccCcCCCccEEeecCC--CCCcHHHHHHHHHHHhcCCCcceee
Confidence 621 1233333445666677665432 22355545544433 456665544
No 248
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=51.21 E-value=2.4e+02 Score=27.29 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.++|..++++++..-|. ...++..|+++...-++ ......+.+.+.+.|+.+.. .....++++..++
T Consensus 31 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i--~~~~~~~~~~~~~ 108 (327)
T TIGR02417 31 QETVERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLI--ACSDDNPDQEKVV 108 (327)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHH
Confidence 3566676666666554321 01123568777743222 33445566677788988654 3446677777788
Q ss_pred HHHHhhcCCeEEEEEc
Q 013695 318 ASSAHERGIEIIIAGA 333 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a 333 (438)
++.+...+++-+|...
T Consensus 109 ~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 109 IENLLARQVDALIVAS 124 (327)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 8888888999666654
No 249
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=51.16 E-value=1.2e+02 Score=23.75 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe-EEEEEcCCCCCchhhh
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag~~~~l~~~i 343 (438)
...+.|+.| .+.+.+.-++......+.++-.+ . ...|..+.++++.. +.+ |+|+ |+.+.++.-+
T Consensus 25 ~~~v~ia~g--~~~~Dalsa~~~a~~~~~PIll~--~-~~l~~~~~~~l~~~---~~~~v~ii--Gg~~~is~~v 89 (92)
T PF04122_consen 25 SDKVYIASG--DNFADALSASPLAAKNNAPILLV--N-NSLPSSVKAFLKSL---NIKKVYII--GGEGAISDSV 89 (92)
T ss_pred CCEEEEEeC--cchhhhhhhHHHHHhcCCeEEEE--C-CCCCHHHHHHHHHc---CCCEEEEE--CCCCccCHHH
Confidence 356656654 46888888888888899998777 3 77789999999654 444 6655 6766665543
No 250
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.71 E-value=46 Score=28.03 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC
Q 013695 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF 53 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~ 53 (438)
..|+.|+.+.+.++++|+.||-...| ..+--.++++.+..+++.+.
T Consensus 16 ~vsp~elv~~l~~~~~PvtiKeTCfG-----aii~G~Ed~v~klveriR~~ 61 (142)
T COG4029 16 GVSPKELVQKLLELSPPVTIKETCFG-----AIIDGPEDEVRKLVERIREL 61 (142)
T ss_pred CcChHHHHHHHHhcCCCeEeeeeeee-----eeecCcHHHHHHHHHHHHHh
Confidence 46788999999999999999997633 33444556666777766543
No 251
>PRK00861 putative lipid kinase; Reviewed
Probab=50.52 E-value=76 Score=30.89 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=46.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCC--CCCEEEec
Q 013695 278 GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAART--PLPVIGVP 355 (438)
Q Consensus 278 gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~--~~pVI~~p 355 (438)
|+.+......++...|++ +++++.......+.. .++.+++...+.++++ ++|+.+.+-.++.+.. ..|+--+|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~a---~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP 88 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPEIGA---DQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP 88 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCCCCH---HHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence 333334556667777776 577777766655543 4455555556777665 4678887777777653 34444466
Q ss_pred CCC
Q 013695 356 VRA 358 (438)
Q Consensus 356 ~~~ 358 (438)
.++
T Consensus 89 ~GT 91 (300)
T PRK00861 89 RGT 91 (300)
T ss_pred CCc
Confidence 653
No 252
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=49.75 E-value=1e+02 Score=29.14 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=30.1
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchh
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
-+-+.|..|..+++.+.++.++++|++++.......+.|..
T Consensus 50 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 50 VVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLAR 90 (268)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccc
Confidence 35557788889999999999999999876666544444443
No 253
>PRK09492 treR trehalose repressor; Provisional
Probab=49.47 E-value=2.5e+02 Score=26.96 Aligned_cols=84 Identities=8% Similarity=0.076 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCC---CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDS---DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~s---D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..++++++...|. ....++.|+++....+ -...+..+.+.+.+.||.+.. .+...+++...++
T Consensus 33 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~--~~~~~~~~~~~~~ 110 (315)
T PRK09492 33 EETRERVEAVINQHGFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPII--MESQFSPEKVNEH 110 (315)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEE--EecCCChHHHHHH
Confidence 4556666666665544220 0112346777774322 244566677888889987643 3446677777788
Q ss_pred HHHHhhcCCeEEEEE
Q 013695 318 ASSAHERGIEIIIAG 332 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ 332 (438)
++.+...+++-+|..
T Consensus 111 ~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 111 LGVLKRRNVDGVILF 125 (315)
T ss_pred HHHHHhcCCCEEEEe
Confidence 887888889966654
No 254
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.18 E-value=86 Score=29.07 Aligned_cols=83 Identities=8% Similarity=0.074 Sum_probs=43.4
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+..=-+.-+.+... ...+| ++.+. +...+.++.+.+.+.|.+...-.+- -.+++.+.+++
T Consensus 8 ~lVtGas~GIG~aia~~la~----------~G~~V-~~~~r--~~~~l~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~~ 73 (227)
T PRK08862 8 ILITSAGSVLGRTISCHFAR----------LGATL-ILCDQ--DQSALKDTYEQCSALTDNVYSFQLK-DFSQESIRHLF 73 (227)
T ss_pred EEEECCccHHHHHHHHHHHH----------CCCEE-EEEcC--CHHHHHHHHHHHHhcCCCeEEEEcc-CCCHHHHHHHH
Confidence 55566555444444444333 12344 33333 4556666666666666553222122 34567777776
Q ss_pred HHHhhc---CCeEEEEEcCC
Q 013695 319 SSAHER---GIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~~---g~~v~i~~ag~ 335 (438)
++..+. .++++|..+|.
T Consensus 74 ~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 74 DAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHhCCCCCEEEECCcc
Confidence 655332 47788887763
No 255
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=48.95 E-value=96 Score=28.74 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=24.1
Q ss_pred CchhhhhcC--CCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013695 338 HLPGMVAAR--TPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 338 ~l~~~i~~~--~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
.|..++... ....|||+|++ .+...--+.| +..|||+.|+.
T Consensus 141 ~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L-----~~~~vP~It~~ 184 (204)
T PRK05575 141 KLKELIKEGKANPKFIIAVPVGFVGAAESKEEL-----EKLDIPYITVR 184 (204)
T ss_pred HHHHHHHcCCCCCCEEEEeCCccccHHHHHHHH-----HhCCCCEEEEe
Confidence 455555544 46789999996 2221122322 23589999765
No 256
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.49 E-value=98 Score=28.66 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 290 AKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 290 ~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+.++++|+.+... .....++++..+.++++-..|++.+|+..
T Consensus 21 ~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~ 63 (257)
T PF13407_consen 21 KAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSP 63 (257)
T ss_dssp HHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEES
T ss_pred HHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecC
Confidence 34444555554443 34455555555555555555555555443
No 257
>PLN02204 diacylglycerol kinase
Probab=48.44 E-value=2.1e+02 Score=31.13 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=63.2
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEE----EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChh
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGII----MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPD 312 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv----~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~ 312 (438)
..+...-.+...+..-.+++...+... . ...+++.|+ +|..+.......++..|...|+++++.+....+...
T Consensus 129 ~~~~f~~~d~~~~~~w~~~l~~~l~~~--~-~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~ 205 (601)
T PLN02204 129 AVYTFGHKDLQTCQSWVDRLNASLNKE--V-GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAF 205 (601)
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHhhc--c-CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHH
Confidence 445555566777777777766655421 1 122344444 455556677788999999999998877665444333
Q ss_pred HHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC
Q 013695 313 LMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 313 ~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
++.+-+.+.+..+++.+|++ ||.+-+-.++.|.
T Consensus 206 d~~~~~~~~~l~~~D~VVaV-GGDGt~nEVlNGL 238 (601)
T PLN02204 206 DVMASISNKELKSYDGVIAV-GGDGFFNEILNGY 238 (601)
T ss_pred HHHHHHhhhhccCCCEEEEE-cCccHHHHHHHHH
Confidence 33332222234567766654 6776666666554
No 258
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=48.14 E-value=1.6e+02 Score=27.99 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=36.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE 327 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~ 327 (438)
.+|.|++|+-.+=-...-+|++|...|+++.+-..+ +.+.+.....++.+++.|.+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~g~~ 116 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPK-QSSKPHYENLVTQCEDLGIP 116 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcC-CCChHHHHHHHHHHHHcCCC
Confidence 578888988888888888999999899887765422 11222213334444555554
No 259
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=47.19 E-value=1.6e+02 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHcCCcE-EEEEEecCCChhHHHHHHHHHhhcCCeEEE
Q 013695 281 SDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~-~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i 330 (438)
.|...+.++++.|.+.|.++ .....+.|. +..+++++ .-|.+|+.
T Consensus 162 ~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~---~~r~~~~~--~~g~PVlL 207 (221)
T PF07302_consen 162 GDEEELAAAARELAEQGADLIVLDCMGYTQ---EMRDIVQR--ALGKPVLL 207 (221)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCH---HHHHHHHH--HhCCCEEe
Confidence 46777888888888888774 344444443 33344432 23566654
No 260
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=46.92 E-value=1e+02 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=16.9
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 297 SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 297 G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|+++++.+....-+++...+.++++...+++.+|...
T Consensus 32 g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~ 68 (272)
T cd06300 32 GLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINP 68 (272)
T ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5444444443334444444455444444555444433
No 261
>PRK05867 short chain dehydrogenase; Provisional
Probab=46.82 E-value=1e+02 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+..++....+...|-++..-.+- -.+++...+++++..+ ..++++|-.+|.
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 43 LDALEKLADEIGTSGGKVVPVCCD-VSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcc-CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 344555555555554332222111 2334445555443322 246666666653
No 262
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.92 E-value=90 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=17.7
Q ss_pred HHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
..++++|+.+........+++++..++++++...+++.+|+
T Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii 63 (273)
T cd06310 23 AAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILL 63 (273)
T ss_pred HHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34444555443321111344554555555444445553333
No 263
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.79 E-value=13 Score=38.47 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHH
Q 013695 6 LESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSS 45 (438)
Q Consensus 6 ~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~ 45 (438)
+.+..+..+...-|+++||. .|+.|.|++.+++..+..+
T Consensus 215 l~df~a~~~~~KrtfivkpD-sgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 215 LCDFPASTEIMKRTFIVKPD-SGAQGSGIYLISDIREKGE 253 (565)
T ss_pred HHHHHHHHHHhcccEEECCC-CCCCCcceeeechhhhhhH
Confidence 34555666667779999995 5679999999977665544
No 264
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=45.73 E-value=80 Score=24.23 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=37.0
Q ss_pred EEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 273 IGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 273 v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|.|+..++ .....+..++..|...|+.++.... .++ +.+-++.++..|++..+.+.
T Consensus 4 v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~~---~~k~~~~a~~~g~~~~iiig 62 (94)
T cd00738 4 VAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ERK---IGKKFREADLRGVPFAVVVG 62 (94)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--CcC---HhHHHHHHHhCCCCEEEEEC
Confidence 54555455 5678889999999999998776521 233 44444455778998555554
No 265
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=45.59 E-value=1.8e+02 Score=28.47 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=38.4
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcE--------------------EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPH--------------------EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~--------------------~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
++.|..+....+...+..|..+|.++ -+-+.|..|....+.+.++.++++|++++-....
T Consensus 46 ~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 125 (321)
T PRK11543 46 VVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGK 125 (321)
T ss_pred EEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444445555555555555555542 1334566677777777777777777776555543
Q ss_pred CCCCchh
Q 013695 335 GAAHLPG 341 (438)
Q Consensus 335 ~~~~l~~ 341 (438)
..+.|..
T Consensus 126 ~~s~la~ 132 (321)
T PRK11543 126 PTSPLGL 132 (321)
T ss_pred CCChhHH
Confidence 3333433
No 266
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.55 E-value=84 Score=30.08 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=58.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCC-ChhHHHHHHHHHhhcCCeEEEEEcCCCC-----Cc---hhhhhcCCCC
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHR-TPDLMFSYASSAHERGIEIIIAGAGGAA-----HL---PGMVAARTPL 349 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~-~~~~~~~~~~~~~~~g~~v~i~~ag~~~-----~l---~~~i~~~~~~ 349 (438)
+.||...+.++++..++.|+.+.+.+..+++ +|+.+.++++.+.+.|++.+ ..+...+ .+ ...+..+.
T Consensus 107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT~G~~~P~~v~~lv~~l~~~~-- 183 (263)
T cd07943 107 HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDSAGAMLPDDVRERVRALREAL-- 183 (263)
T ss_pred chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCCcCHHHHHHHHHHHHHhC--
Confidence 5567778888888888888887777755554 47777788888877788754 3342211 11 22222222
Q ss_pred CEEEecCC--CCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013695 350 PVIGVPVR--ASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 350 pVI~~p~~--~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
|+ +|.. ...--|+.---+..++..|+=..-..++
T Consensus 184 ~~--~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~ 219 (263)
T cd07943 184 DP--TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLA 219 (263)
T ss_pred CC--ceEEEEecCCcchHHHHHHHHHHhCCCEEEeecc
Confidence 32 2332 2333355533455566778776633333
No 267
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.22 E-value=75 Score=31.49 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=45.1
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCc-----EEEEEEecCCChh
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVP-----HEVRIVSAHRTPD 312 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~-----~~~~v~s~h~~~~ 312 (438)
.++++|.|..-=++-+...+.. ...| +++ ..|....+++++.+.+-.-+ +.+..+|.+
T Consensus 37 ~~vVTGansGIG~eta~~La~~----------Ga~V-v~~--~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~---- 99 (314)
T KOG1208|consen 37 VALVTGATSGIGFETARELALR----------GAHV-VLA--CRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLK---- 99 (314)
T ss_pred EEEEECCCCchHHHHHHHHHhC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHH----
Confidence 5677777776555555554442 1234 333 24567777777777761111 234433433
Q ss_pred HHHHHHHHHh--hcCCeEEEEEcCC
Q 013695 313 LMFSYASSAH--ERGIEIIIAGAGG 335 (438)
Q Consensus 313 ~~~~~~~~~~--~~g~~v~i~~ag~ 335 (438)
.+.+|...++ ....+|.|-.||-
T Consensus 100 SV~~fa~~~~~~~~~ldvLInNAGV 124 (314)
T KOG1208|consen 100 SVRKFAEEFKKKEGPLDVLINNAGV 124 (314)
T ss_pred HHHHHHHHHHhcCCCccEEEeCccc
Confidence 3666666654 4456688877763
No 268
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=45.15 E-value=94 Score=29.09 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHhhcCCeEEE
Q 013695 310 TPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~v~i 330 (438)
+++.-.+.++.+..++++.+|
T Consensus 42 ~~~~~~~~i~~l~~~~vdgiI 62 (275)
T cd06320 42 DQQGQLSIAENMINKGYKGLL 62 (275)
T ss_pred CHHHHHHHHHHHHHhCCCEEE
Confidence 343333444444444444433
No 269
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=45.14 E-value=1.3e+02 Score=27.93 Aligned_cols=85 Identities=25% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHcCCcEEEEEEe----cCCChhHHHHHHHHHhh-cCCeEEEEEcCCCC----CchhhhhcC--CCCCEEEecCC-C
Q 013695 291 KILTMFSVPHEVRIVS----AHRTPDLMFSYASSAHE-RGIEIIIAGAGGAA----HLPGMVAAR--TPLPVIGVPVR-A 358 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s----~h~~~~~~~~~~~~~~~-~g~~v~i~~ag~~~----~l~~~i~~~--~~~pVI~~p~~-~ 358 (438)
..|..+|.++.+.+.. ..+.+.....+..-.+. .|. ++++ |.++ .|-.++... ....|||+|++ .
T Consensus 83 ~~l~~~g~~v~C~i~~~~~~~~g~TRs~aam~~a~~~~~~~-IvvI--GNAPTAL~~l~eli~~g~~~PalVIg~PVGFV 159 (203)
T PRK05954 83 LVNKTFQNPIITAIDQVSIPLPGKTRTETGLLKCAQQYPEA-IYVI--GNAPTALLALCQQIRAGRVKPSLVIGVPVGFV 159 (203)
T ss_pred hhHhhcCCcEEEECCCccccccCCcHHHHHHHHHHHHCCCC-EEEE--eCCHHHHHHHHHHHHcCCCCCCEEEEECCccc
Confidence 4566678777665432 12223222322222222 233 3322 3332 344555433 56779999996 2
Q ss_pred CCCCChhhHHHhhcCCCCCceEEEE
Q 013695 359 SALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 359 ~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
+...--+.| +..|||++|+.
T Consensus 160 ~A~ESKe~L-----~~~~iP~It~~ 179 (203)
T PRK05954 160 SVVEAKQAL-----AQLDVPQIRVE 179 (203)
T ss_pred CHHHHHHHH-----HhCCCCEEEEe
Confidence 221122322 24589999765
No 270
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=45.02 E-value=3.2e+02 Score=27.00 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=64.9
Q ss_pred CCCeEEEEEecCC-----CH----HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc
Q 013695 269 VLPRIGIIMGSDS-----DL----PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL 339 (438)
Q Consensus 269 ~~~~v~iv~gs~s-----D~----~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l 339 (438)
+.+.++|+.|++| |. ..+..+...+...|..+.++ .-.|||.++.+.+++.-+..-.+.+-...+.|-.
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vt--tSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy 222 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVT--TSRRTPPEAEAALRELLKDNPGVYIWDGTGENPY 222 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEE--cCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcH
Confidence 4578999999865 23 34455566666777555544 5599999999999876543333433333345667
Q ss_pred hhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC
Q 013695 340 PGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 340 ~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~ 386 (438)
.++++. ..-|+-++-|. +++ +.++..|.||.++....
T Consensus 223 ~~~La~--ad~i~VT~DSv-------SMv-sEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 223 LGFLAA--ADAIVVTEDSV-------SMV-SEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHh--CCEEEEcCccH-------HHH-HHHHHcCCCEEEecCCC
Confidence 788764 33344443321 122 34557789999877543
No 271
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=44.77 E-value=83 Score=31.01 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=43.1
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecC-----CChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-C
Q 013695 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAH-----RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-R 346 (438)
Q Consensus 273 v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h-----~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-~ 346 (438)
.++++|..-|..........+...+++++..+.+.. .+.....++.+.+.+...+++++.......+++.+++ .
T Consensus 31 ~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~ 110 (363)
T cd03786 31 VLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFK 110 (363)
T ss_pred EEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH
Confidence 446677666655555555544333445555544321 1112223333334555677777663344456555554 4
Q ss_pred CCCCEEEecC
Q 013695 347 TPLPVIGVPV 356 (438)
Q Consensus 347 ~~~pVI~~p~ 356 (438)
.-.||+.+..
T Consensus 111 ~~iPvv~~~~ 120 (363)
T cd03786 111 LGIPVAHVEA 120 (363)
T ss_pred cCCCEEEEec
Confidence 5678887653
No 272
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=44.02 E-value=1.6e+02 Score=29.00 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=27.8
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchh
Q 013695 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG 341 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~ 341 (438)
+-+.|..|..+.+.+.++.+++.|++++.......+.|..
T Consensus 98 ~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~ 137 (326)
T PRK10892 98 VIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMAR 137 (326)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccc
Confidence 3346777888888888888888888876666544444443
No 273
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.67 E-value=1.9e+02 Score=27.36 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=37.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE--------ecCCChhHHHHHHHHHhhcCCe-EEEEEcC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV--------SAHRTPDLMFSYASSAHERGIE-IIIAGAG 334 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~--------s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag 334 (438)
++|++++ +=..+.-....+.|.+.||++..... =++=+|+.+.+.+++....+.+ ||+.+.+
T Consensus 121 ~RIalvT--PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn 191 (239)
T TIGR02990 121 RRISLLT--PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTA 191 (239)
T ss_pred CEEEEEC--CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 5677776 44456667777888888888643210 1234577777777665455566 5555543
No 274
>PRK05382 chorismate synthase; Validated
Probab=43.56 E-value=76 Score=32.06 Aligned_cols=63 Identities=29% Similarity=0.362 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCcc
Q 013695 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 388 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~~ 388 (438)
+++.+.++++++.|- .|.|++ ..-|-|||++ +..++.+|+.|+.+-|. || |--|.|+.++
T Consensus 182 ~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~f~kLda~la~a~ms--IpAvKgvE~G~Gf 244 (359)
T PRK05382 182 EEMEELIDEAKKEGD-----------SLGGVV----EVVAEGVPAGLGEPVFDKLDADLAHALMS--INAVKGVEIGDGF 244 (359)
T ss_pred HHHHHHHHHHHHcCC-----------CCceEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEECcch
Confidence 345566666655443 233333 2335577774 44578999999887773 34 4478887776
Q ss_pred hHH
Q 013695 389 NAG 391 (438)
Q Consensus 389 ~Aa 391 (438)
.+|
T Consensus 245 ~~a 247 (359)
T PRK05382 245 AAA 247 (359)
T ss_pred hhc
Confidence 655
No 275
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=43.52 E-value=20 Score=37.37 Aligned_cols=44 Identities=23% Similarity=0.108 Sum_probs=36.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|-|||.-..+.++.|.++|+++..| -+ |.+++ ++.|++|.-+..
T Consensus 8 SVsdKtGive~ak~L~~~gvei~ST----GG----Tak~l---~eaGi~V~~Vs~ 51 (515)
T COG0138 8 SVSDKTGIVEFAKALVELGVEILST----GG----TAKLL---AEAGIPVTEVSD 51 (515)
T ss_pred eeccccChHHHHHHHHhCCEEEEec----CC----HHHHH---HhCCCCCCchhh
Confidence 3568999999999999999998888 88 88888 567999876643
No 276
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=43.33 E-value=63 Score=32.48 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.4
Q ss_pred cccCHHHHHHHHHhhCC-cEEEEecCCCCCCc-----------CcEEeCCHHHHHHHHHHhc
Q 013695 2 EVNDLESAWRAGKQFGY-PLMVKSKRLAYDGR-----------GNAVAKSEEELSSAITALG 51 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvVvKP~~~g~~g~-----------Gv~iv~~~eel~~~~~~~~ 51 (438)
...|+||+.+.++.+|- -+|||.-.+. +|| ||.+|.+++|.+..-.++.
T Consensus 46 vA~speEA~~~akklg~kdlVikAQ~lA-gGRgKGtF~SglkgGV~iVf~p~Eak~va~qmi 106 (434)
T KOG2799|consen 46 VAKSPEEAFAIAKKLGSKDLVIKAQVLA-GGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMI 106 (434)
T ss_pred ccCCHHHHHHHHHHhCCcceEEEeeecc-cCcccCCcCcCcCCceEEEeChHHHHHHHHHhh
Confidence 46799999999999975 4999996543 343 6999999999887776653
No 277
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=1.1e+02 Score=23.56 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHH
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 319 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~ 319 (438)
+.+.-+.+..+.+.|.+.|++++......+. +++..++++
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~-~~~~~~~~~ 46 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDE-PEEAREMVK 46 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCc-HHHHHHHHH
Confidence 3556899999999999999999886665444 245555664
No 278
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=43.07 E-value=2.9e+02 Score=29.72 Aligned_cols=34 Identities=24% Similarity=0.079 Sum_probs=30.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v 304 (438)
.+|.|++|...+=-...-+|+.|..+|+++.+-.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY 169 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 5799999999999999999999999999876644
No 279
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=42.94 E-value=2.8e+02 Score=25.70 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcE-EEE-------------------EEecCCChhHHHHHHHHHhhcCCeEE
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVR-------------------IVSAHRTPDLMFSYASSAHERGIEII 329 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~-~~~-------------------v~s~h~~~~~~~~~~~~~~~~g~~v~ 329 (438)
.++| |++|--..--+.++.+-+|-.+|++. .++ .+|--+.++++...++.+++.|++++
T Consensus 39 ~gkv-~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~li 117 (202)
T COG0794 39 KGKV-FVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLI 117 (202)
T ss_pred CCcE-EEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEE
Confidence 4677 88887777888999999999999984 333 24556667777777777788788755
Q ss_pred EEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 330 IAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 330 i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-.--...|+ +-.+-|+.+|..
T Consensus 118 aiT~~~~SsLa-----k~aDvvl~ip~~ 140 (202)
T COG0794 118 AITSNPDSSLA-----KAADVVLVIPVK 140 (202)
T ss_pred EEeCCCCChHH-----HhcCeEEEccCc
Confidence 44332222232 234567777764
No 280
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.42 E-value=2.7e+02 Score=25.36 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=26.6
Q ss_pred EecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013695 305 VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 305 ~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
.|..|....+.+.++.++++|++++.......+.|..+. .....+|.+|.
T Consensus 118 iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~--~~ad~~l~v~~ 167 (197)
T PRK13936 118 ISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLL--LPEDVEIRVPA 167 (197)
T ss_pred EeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhh--ccCCEEEEeCC
Confidence 455666666666666677777775554443333343321 11335566665
No 281
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.32 E-value=61 Score=25.94 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=43.2
Q ss_pred CeEEEEEec-CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh--hcCC
Q 013695 271 PRIGIIMGS-DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--AART 347 (438)
Q Consensus 271 ~~v~iv~gs-~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--~~~~ 347 (438)
.+|.+++|+ -|.--.+.++.+.+++.|++++..-++ ..+..+.. ..+++++...-.+-.+..+- +...
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~----~~~~~~~~-----~~~Dvill~pqi~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS----YGAAGEKL-----DDADVVLLAPQVAYMLPDLKKETDKK 74 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec----HHHHHhhc-----CCCCEEEECchHHHHHHHHHHHhhhc
Confidence 466666653 222346788889999999999988444 33344333 24676665432221222221 1223
Q ss_pred CCCEEEecCC
Q 013695 348 PLPVIGVPVR 357 (438)
Q Consensus 348 ~~pVI~~p~~ 357 (438)
..||..+|+.
T Consensus 75 ~ipv~~I~~~ 84 (95)
T TIGR00853 75 GIPVEVINGA 84 (95)
T ss_pred CCCEEEeChh
Confidence 4577777764
No 282
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.04 E-value=1.3e+02 Score=30.08 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=41.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC-hhHHHHHHHHHhhcCCeEEE
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~-~~~~~~~~~~~~~~g~~v~i 330 (438)
..++.+...+.++..+++|+.+......+|+. |+.+.++++.+++-|++.+-
T Consensus 110 ~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 110 HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEE
Confidence 55677788888889899999888888777876 67778888888888888543
No 283
>PRK05953 precorrin-8X methylmutase; Validated
Probab=41.67 E-value=1.6e+02 Score=27.34 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=42.7
Q ss_pred HHHHHcCCcEEEEEEec---CCChhHHHHHHHHHhh--cCCeEEEEEcCCCC----CchhhhhcC--CCCCEEEecCC-C
Q 013695 291 KILTMFSVPHEVRIVSA---HRTPDLMFSYASSAHE--RGIEIIIAGAGGAA----HLPGMVAAR--TPLPVIGVPVR-A 358 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s~---h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~~----~l~~~i~~~--~~~pVI~~p~~-~ 358 (438)
..|..+|.++.+.+.-. ++.-.+...-++.+.+ .|. +++ =|.++ .|..+|... ....|||+|++ .
T Consensus 81 ~~l~~~g~~v~C~i~~~~v~~~g~TRs~aam~~a~~~~~g~-Ivv--IGNAPTAL~~l~~li~~g~~~PalVIG~PVGFV 157 (208)
T PRK05953 81 TLQNTFANPVYCSTETITRPQKEKTRTAWGIETLARRYPEA-IFV--IGQSQTALTALVELVEAEEIRPALVIATPAGFI 157 (208)
T ss_pred hhHHhcCCeEEEECCCCCccccccCHHHHHHHHHHHHCCCC-EEE--EeCcHHHHHHHHHHHHhcCCCCCEEEEeCCccc
Confidence 45677788877664221 1111222222222222 233 222 24443 455666544 57789999996 2
Q ss_pred CCCCChhhHHHhhcCCCCCceEEEE
Q 013695 359 SALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 359 ~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
+...--+.|. ..+||++|+.
T Consensus 158 ~AaESKe~L~-----~~~vP~It~~ 177 (208)
T PRK05953 158 DADDAKERLQ-----DSLVPHITID 177 (208)
T ss_pred CcHHHHHHHH-----hCCCCEEEEe
Confidence 2222223332 3579999875
No 284
>PRK14686 hypothetical protein; Provisional
Probab=41.64 E-value=86 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 111 ELATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 111 ~~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
..-++.|.+.++..|| + +...||++..+++.+.|+||-.|.+.+
T Consensus 9 ~~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~~~~lvFVEVKtR~~~~ 60 (119)
T PRK14686 9 KEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSD 60 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECcCCEEEEEEEEecCCCC
Confidence 3456677777777665 2 566799988777789999999998643
No 285
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.58 E-value=1.5e+02 Score=23.49 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=33.0
Q ss_pred eEEEEEecCCCHHH--HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 272 RIGIIMGSDSDLPV--MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~sD~~~--~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+|.+++|+----.. ..++.+.|++.|++++.. |.+......++ ..++++++..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~----~~~~~e~~~~~-----~~~D~iv~t~ 58 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELI----QCRVNEIETYM-----DGVHLICTTA 58 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEE----EecHHHHhhhc-----CCCCEEEECC
Confidence 57777776432333 477778999999998888 54444333322 3467666543
No 286
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=41.52 E-value=1e+02 Score=29.17 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred HHHHHcCCcEEEEE-Ee--cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 291 KILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 291 ~~L~~~G~~~~~~v-~s--~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-.++.+|++....+ .+ ..=+|+.+.++.+.+++.++++++.-.+.+..+...|+..+..||+.+.+-
T Consensus 162 Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 162 YFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 35577899966665 12 123588899999999999999999999888899999999898999877653
No 287
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=41.40 E-value=25 Score=34.40 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=58.7
Q ss_pred eEEEEEecCCCHH-----HHHHHHHHHHHcCCcEEEEEEecCC--ChhHHHHHHHH--HhhcCCeEEEEEc----CCCCC
Q 013695 272 RIGIIMGSDSDLP-----VMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASS--AHERGIEIIIAGA----GGAAH 338 (438)
Q Consensus 272 ~v~iv~gs~sD~~-----~~~~~~~~L~~~G~~~~~~v~s~h~--~~~~~~~~~~~--~~~~g~~v~i~~a----g~~~~ 338 (438)
+|+|++|+.|+.. ....+.+.|++.|+++..--..-.. +.....+.+.. .....+++++-.. |...+
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~ 80 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGT 80 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcH
Confidence 4789999877643 5677889999999986443222111 01112222211 0113467555544 23456
Q ss_pred chhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceE-EEEeC
Q 013695 339 LPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVA-TVAIN 385 (438)
Q Consensus 339 l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~-tv~i~ 385 (438)
+++++. ..-.|++|.+........-..+...+.-..|||+. +..+.
T Consensus 81 ~~~~le-~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 127 (315)
T TIGR01205 81 IQGLLE-LMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLT 127 (315)
T ss_pred HHHHHH-HcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEe
Confidence 666654 34578888654211111112223333446788877 55443
No 288
>PRK09526 lacI lac repressor; Reviewed
Probab=41.19 E-value=3.4e+02 Score=26.29 Aligned_cols=107 Identities=8% Similarity=0.002 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.++|..++++++...|. ...+++.|+++....++ ...+..+.+.+.+.|+.+.... +.+..++...++
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~-~~~~~~~~~~~~ 112 (342)
T PRK09526 34 AKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISM-VERSGVEACQAA 112 (342)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHH
Confidence 4666777777666654320 11123568888754322 2345556677888998876542 222334555677
Q ss_pred HHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCCCEEEe
Q 013695 318 ASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++-+|...... ..+..+.......||+-+
T Consensus 113 l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~iPvV~~ 150 (342)
T PRK09526 113 VNELLAQRVSGVIINVPLEDADAEKIVADCADVPCLFL 150 (342)
T ss_pred HHHHHhcCCCEEEEecCCCcchHHHHHhhcCCCCEEEE
Confidence 7777888899666542222 222223222234677755
No 289
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.09 E-value=1e+02 Score=24.62 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=44.8
Q ss_pred EEEEEec-CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh--hcCCCC
Q 013695 273 IGIIMGS-DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--AARTPL 349 (438)
Q Consensus 273 v~iv~gs-~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--~~~~~~ 349 (438)
|.+++|+ -+.--.+.++.+.+++.|+++++.-+| .....+.. ..+++++..---.-.+..+- ......
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~----~~~~~~~~-----~~~Diil~~Pqv~~~~~~i~~~~~~~~~ 72 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVP----ESELEEYI-----DDADVVLLGPQVRYMLDEVKKKAAEYGI 72 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEec----HHHHHHhc-----CCCCEEEEChhHHHHHHHHHHHhccCCC
Confidence 4455442 222246788889999999999888444 33333322 34676665432222233332 234567
Q ss_pred CEEEecCCC-CCCCC
Q 013695 350 PVIGVPVRA-SALDG 363 (438)
Q Consensus 350 pVI~~p~~~-~~~~g 363 (438)
||..+|+.. +.+||
T Consensus 73 pv~~I~~~~Y~~~dg 87 (96)
T cd05564 73 PVAVIDMMDYGMMNG 87 (96)
T ss_pred cEEEcChHhcccCCH
Confidence 888888752 33444
No 290
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.01 E-value=1.8e+02 Score=27.13 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 288 ~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+.+.+.++|+.+. +.....+++.-.++++.+...+++.+|+..
T Consensus 20 ~i~~~~~~~g~~v~--~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 20 AAKAHAKALGYELI--STDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34455556665543 233455566555666666666666555543
No 291
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=40.83 E-value=2.2e+02 Score=27.46 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=57.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE---ecCCChhHHHHHHHH-HhhcCCeEEEEEc----CCCCCchhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASS-AHERGIEIIIAGA----GGAAHLPGM 342 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~---s~h~~~~~~~~~~~~-~~~~g~~v~i~~a----g~~~~l~~~ 342 (438)
+.|.+++-++ +.+.++.+.+..+|..--..+. -.+-.|..|+..+.. .++.|.+.++++. |.+++++.+
T Consensus 56 ~eV~vlt~Gp---~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~ 132 (260)
T COG2086 56 GEVTVLTMGP---PQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPL 132 (260)
T ss_pred ceEEEEEecc---hhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHH
Confidence 4455555554 5666777778889998433332 345567777776654 4666777777766 677899999
Q ss_pred hhcCCCCCEEEecC
Q 013695 343 VAARTPLPVIGVPV 356 (438)
Q Consensus 343 i~~~~~~pVI~~p~ 356 (438)
+|.+.-+|.++--.
T Consensus 133 lAe~Lg~P~~t~v~ 146 (260)
T COG2086 133 LAELLGWPQVTYVS 146 (260)
T ss_pred HHHHhCCceeeeEE
Confidence 99999999997543
No 292
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=40.70 E-value=2.7e+02 Score=26.85 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 293 LTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 293 L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+..++=.-.+-+.|..|.+.++.+.++.++++|++++-.-
T Consensus 172 ~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT 211 (281)
T COG1737 172 LALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAIT 211 (281)
T ss_pred HHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEc
Confidence 3344444345556777777777777777777777755443
No 293
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.61 E-value=1.5e+02 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=17.6
Q ss_pred HHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+.+.++|..+.+.+.....++++..+.++.+...+++.+|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi 63 (271)
T cd06321 23 AAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILL 63 (271)
T ss_pred HHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 44444333333333333444444444444444444543333
No 294
>PRK13057 putative lipid kinase; Reviewed
Probab=40.27 E-value=1.7e+02 Score=28.29 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CCCCEEEecCCC
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVPVRA 358 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVI~~p~~~ 358 (438)
....++.+.|.+.|++++.... +.+....++.++. ..+.+++| ++||.+.+-.++.+. +..|+--+|.++
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~~~~~~lgiiP~GT 84 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALVETGLPLGILPLGT 84 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence 4567888899999999776542 3344555666553 34666554 567888777776553 445666667654
No 295
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=40.20 E-value=3.5e+02 Score=26.13 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=48.3
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEecCCChhHHH
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h~~~~~~~ 315 (438)
.+++.+|.|-.=-.+-+.+.+.+ ...+ |+.+ .+.+.+.++++.|.. .|+.++...+-.-. |+...
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~----------g~~l-iLva--R~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~~ 72 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARR----------GYNL-ILVA--RREDKLEALAKELEDKTGVEVEVIPADLSD-PEALE 72 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHC----------CCEE-EEEe--CcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHHH
Confidence 46777777655444444444431 1234 4443 457888888887775 55665554444333 45556
Q ss_pred HHHHHHhhc--CCeEEEEEcC
Q 013695 316 SYASSAHER--GIEIIIAGAG 334 (438)
Q Consensus 316 ~~~~~~~~~--g~~v~i~~ag 334 (438)
+...+.+.+ .+++.|-.||
T Consensus 73 ~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 73 RLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred HHHHHHHhcCCcccEEEECCC
Confidence 655555555 4667777775
No 296
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=40.04 E-value=3.6e+02 Score=26.24 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.++|..++++++..-|. ...++..|+++..+-++ ...+..+.+.+.+.|+.+. +...+.++++-.++
T Consensus 30 ~~tr~rV~~~a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~ 107 (343)
T PRK10727 30 EASRLAVHSAMESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLL--IGNGYHNEQKERQA 107 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEE--EEeCCCCHHHHHHH
Confidence 4667777777776654321 11123567777753222 2334455567788898753 34456677777778
Q ss_pred HHHHhhcCCeEEEEEc
Q 013695 318 ASSAHERGIEIIIAGA 333 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~a 333 (438)
++.+...+++.+|+..
T Consensus 108 i~~l~~~~vdgiIi~~ 123 (343)
T PRK10727 108 IEQLIRHRCAALVVHA 123 (343)
T ss_pred HHHHHhcCCCEEEEec
Confidence 8887788899666654
No 297
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=40.00 E-value=2.2e+02 Score=25.98 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCeEEEE-EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013695 270 LPRIGII-MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 270 ~~~v~iv-~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
.++++++ +.+..+........+.+..+|+........-.-+.+...+.+ . .++++.+.-|-..++...+...
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l---~--~ad~I~~~GG~~~~~~~~l~~t-- 101 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL---L--EADGIFVGGGNQLRLLSVLRET-- 101 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH---h--hCCEEEEcCCcHHHHHHHHHhC--
Confidence 4667666 444445677788889999999986544322111234444445 2 3566666555555666665441
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceE
Q 013695 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVA 380 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~ 380 (438)
.+.+++++.++ .|.|++
T Consensus 102 -------------~~~~~i~~~~~--~G~v~~ 118 (210)
T cd03129 102 -------------PLLDAILKRVA--RGVVIG 118 (210)
T ss_pred -------------ChHHHHHHHHH--cCCeEE
Confidence 24555566655 565544
No 298
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.73 E-value=2.1e+02 Score=23.50 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=33.3
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
+-+.|-.|...++.+.++.+++.|++++.......+.|... ..-++.+|.+
T Consensus 51 ~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~-----ad~~l~~~~~ 101 (120)
T cd05710 51 VILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKL-----ADYVIVYGFE 101 (120)
T ss_pred EEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHh-----CCEEEEccCC
Confidence 45567788888888888888888888666655444444432 2345555553
No 299
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=39.52 E-value=2.7e+02 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCeEEEEEe-cCCCHHHHHHHHHHHHHcCCc
Q 013695 270 LPRIGIIMG-SDSDLPVMKDAAKILTMFSVP 299 (438)
Q Consensus 270 ~~~v~iv~g-s~sD~~~~~~~~~~L~~~G~~ 299 (438)
.++|+|+-. |.............|..+|+.
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~ 58 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVK 58 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCc
Confidence 467777743 443346677778889999996
No 300
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.43 E-value=3.8e+02 Score=26.27 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=43.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec----CCChhHHHHHHHHHhhcC----CeEEEEEcCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA----HRTPDLMFSYASSAHERG----IEIIIAGAGG 335 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~----h~~~~~~~~~~~~~~~~g----~~v~i~~ag~ 335 (438)
.+|+|||.. +-....+..+.++..+..++..+..+ ...+....+-++.+...+ ++|+|++-||
T Consensus 15 ~~I~vITs~--~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 15 KRIAVITSP--TGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CEEEEEeCC--chHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 589999944 35667777788887666555444332 256777888888776554 8888887754
No 301
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=39.34 E-value=2.7e+02 Score=25.64 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
...+.+.++++|+.+.. .+...++++..++++.+.+++++.+|+.
T Consensus 18 ~~~i~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~ 62 (268)
T cd06273 18 IQAFQETLAAHGYTLLV--ASSGYDLDREYAQARKLLERGVDGLALI 62 (268)
T ss_pred HHHHHHHHHHCCCEEEE--ecCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 34455556666655543 2334555555556655555566644443
No 302
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=39.03 E-value=3.1e+02 Score=25.80 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=63.5
Q ss_pred eeEEEEEecCCHHHHHHHHHHHhhhc---cCc--cccC-C-CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec
Q 013695 235 KMGHITIVGSSMGLVESRLNSLLKED---SSD--CQFK-T-VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA 307 (438)
Q Consensus 235 ~iG~Vi~~G~~~~ea~~ka~~~~~~i---~~~--~~~~-~-~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~ 307 (438)
.++ |-..|.|.++....+..+.+.. +.+ |+.+ . ..+.-.-+ -.|.+.+.++.+.+++.++++.+.+-.-
T Consensus 74 p~~-vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~L---l~~p~~l~eiv~avr~~~~pVsvKir~g 149 (233)
T cd02911 74 LVG-VNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEAL---LKDPERLSEFIKALKETGVPVSVKIRAG 149 (233)
T ss_pred eEE-EEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHH---cCCHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 344 6677888888776666654422 111 1110 0 00100001 2467888999998888899988885321
Q ss_pred CCChhHHHHHHHHHhhcCCeEEEEEcCCCC---CchhhhhcC-CCCCEEEe
Q 013695 308 HRTPDLMFSYASSAHERGIEIIIAGAGGAA---HLPGMVAAR-TPLPVIGV 354 (438)
Q Consensus 308 h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~---~l~~~i~~~-~~~pVI~~ 354 (438)
+ + +.+.++.+.+++.|++.+.+..+... ++ ..|+.. +..|||+.
T Consensus 150 ~-~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~~~ipVIgn 197 (233)
T cd02911 150 V-D-VDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDISTELFIIGN 197 (233)
T ss_pred c-C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhcCCCEEEEE
Confidence 1 1 45677777778889997665443221 21 233333 45677764
No 303
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=38.76 E-value=60 Score=32.57 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASA 360 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~ 360 (438)
.....+..+.+...-+.+-- ....+++.+.+.++++.|- .|.|++ ..-|.|||++ +..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d-----~~~~~~m~~~I~~ak~~gD-----------SlGG~v----e~~~~gvP~GLG~p~ 217 (346)
T PF01264_consen 158 DDPSEEDFEKIEESPVRCPD-----PEAEEEMKELIDEAKKEGD-----------SLGGIV----EVVATGVPAGLGSPV 217 (346)
T ss_dssp HHHHHHHHHHHHHSTTSBSS-----HHHHHHHHHHHHHHHHTTG-----------GB-EEE----EEEEES--TT-SBSS
T ss_pred ccchhhhhhhhhcCCCCCCC-----HHHHHHHHHHHHHHHHhCC-----------CCCeEE----EEEEEecCCCCCCCC
Confidence 34444444555555554310 0112346667766666543 233332 2345677875 445
Q ss_pred CCChhhHHHhhcCCCCCc-eEEEEeCCcchHH
Q 013695 361 LDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 361 ~~g~~~l~s~~~~~~gip-~~tv~i~~~~~Aa 391 (438)
+|.+|+.|+.+-|. || |--|.++.++.+|
T Consensus 218 fdkLda~la~al~s--IpAvKgvEfG~Gf~~a 247 (346)
T PF01264_consen 218 FDKLDARLAQALMS--IPAVKGVEFGDGFEAA 247 (346)
T ss_dssp CCSHHHHHHHHHHT--STTEEEEEETTGGGGG
T ss_pred cCcHHHHHHHHhhC--CCCeeeEEecCcHHHh
Confidence 88999999777662 22 5588888887765
No 304
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=38.46 E-value=52 Score=36.33 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCcEEEEecCCCCCCcCcEEeCCH---HHHHHHHHHhcC------------CCCcEEEeeccCC-ceeEEEEEEEecC--
Q 013695 17 GYPLMVKSKRLAYDGRGNAVAKSE---EELSSAITALGG------------FDRGLYVEKWAPF-VKELAVIVVRGRD-- 78 (438)
Q Consensus 17 gyPvVvKP~~~g~~g~Gv~iv~~~---eel~~~~~~~~~------------~~~~~lvEe~I~g-~~E~sv~~~~~~~-- 78 (438)
.=|+|=||.. | .-..++|-+-- .--.+.|+.+.+ ..+.+|-|||++- +..+-|-.+. .+
T Consensus 178 ~KPFVEKPVs-~-EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVG-p~Ya 254 (1018)
T KOG1057|consen 178 QKPFVEKPVS-A-EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVG-PDYA 254 (1018)
T ss_pred cCCcccCCCC-c-ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeC-cchh
Confidence 4689999964 2 23455443211 123344555431 1267999999983 2344333331 11
Q ss_pred -CeEEEEeeee-eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCC
Q 013695 79 -KSILCYPVVE-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPR 150 (438)
Q Consensus 79 -G~~~~~~~~e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR 150 (438)
-+..--|..+ .+.++.+...+-.|..|+++. +.+|.+++-++.. -++++|+.- .+|.-||+++|.-
T Consensus 255 HAEaRKSPvvDGkV~Rns~GKEvRYpv~Ls~~E----K~iA~KVciAF~Q-~VCGFDLLR-a~G~SYVcDVNGf 322 (1018)
T KOG1057|consen 255 HAEARKSPVVDGKVERNSDGKEVRYPVILNSSE----KQIARKVCIAFKQ-TVCGFDLLR-ANGKSYVCDVNGF 322 (1018)
T ss_pred hhhhccCccccceeeecCCCceeeceeecChhh----HHHHhHHHhhccc-cccchHHhh-cCCceEEEeccce
Confidence 0111122222 123333334444566676643 4577888888764 466678765 5799999999854
No 305
>PRK04247 hypothetical protein; Provisional
Probab=38.23 E-value=3.1e+02 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=17.3
Q ss_pred EEEEEE-EeCCCcEEEEEEcCCCC
Q 013695 130 FAVELF-WTNNGQILLNEVAPRPH 152 (438)
Q Consensus 130 ~~ve~~-~~~~g~~~viEiNpR~~ 152 (438)
..+|++ .+++|.+.|+|+-.|-+
T Consensus 160 G~IDila~D~~G~lViVEvKrr~~ 183 (238)
T PRK04247 160 GIIDILGRDKDGNLVVLELKRRRA 183 (238)
T ss_pred CceeEEEECCCCCEEEEEEEEccC
Confidence 456755 45568899999999965
No 306
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=38.21 E-value=1.4e+02 Score=26.80 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=18.9
Q ss_pred HHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 292 ILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 292 ~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.+.++|..+...+.....+++...+.++.+...+++.++.
T Consensus 25 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 64 (269)
T cd01391 25 AAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIG 64 (269)
T ss_pred HHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3444344444444444555544555555544445554444
No 307
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=38.18 E-value=1.5e+02 Score=28.47 Aligned_cols=99 Identities=7% Similarity=0.041 Sum_probs=50.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC-hhHHHHHHHHHhhcCCeEEEEEc--CCC-----CCchhhhhcCCCCC
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEIIIAGA--GGA-----AHLPGMVAARTPLP 350 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~-~~~~~~~~~~~~~~g~~v~i~~a--g~~-----~~l~~~i~~~~~~p 350 (438)
..++.+.+.++.+..++.|+.+.+....+.|. ++.+.++++.+.+-|++.+..+- |.. ..+...+..... |
T Consensus 104 ~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~ 182 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLD-K 182 (266)
T ss_pred ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC-C
Confidence 34566667777777777777666665555554 45666666666666666433222 211 022222332222 1
Q ss_pred EEEecCC--CCCCCChhhHHHhhcCCCCCceE
Q 013695 351 VIGVPVR--ASALDGLDSLLSIVQMPRGVPVA 380 (438)
Q Consensus 351 VI~~p~~--~~~~~g~~~l~s~~~~~~gip~~ 380 (438)
++|.+ ...--|+.---+..++..|+=..
T Consensus 183 --~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 183 --DIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred --CceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 12332 22333555445666677887665
No 308
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=38.15 E-value=1.1e+02 Score=30.21 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=59.5
Q ss_pred eeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEecCCChhH
Q 013695 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 235 ~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h~~~~~ 313 (438)
+..-|.+-++-...+++ .+.+.. .=+|++++ .+.+.+..+++.+.+ .++++..-++-.-+.-..
T Consensus 50 ~WAVVTGaTDGIGKayA--~eLAkr----------G~nvvLIs---Rt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ 114 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYA--RELAKR----------GFNVVLIS---RTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEV 114 (312)
T ss_pred CEEEEECCCCcchHHHH--HHHHHc----------CCEEEEEe---CCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchh
Confidence 45555566666666654 333331 12465555 467888888866654 666655554444443332
Q ss_pred HHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC---CCEEEecC
Q 013695 314 MFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP---LPVIGVPV 356 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~---~pVI~~p~ 356 (438)
-.++.+.+..-.+-+.|=.+|++-..|........ .=+|+|=.
T Consensus 115 ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~ 160 (312)
T KOG1014|consen 115 YEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNI 160 (312)
T ss_pred HHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEec
Confidence 34444444543444677777988755777655433 44555543
No 309
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=38.04 E-value=2.8e+02 Score=24.42 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=32.7
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-+.|..|....+.+.++.++++|++++-......+.|..+ ..-+|-+|..
T Consensus 104 v~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~-----aD~~l~~~~~ 155 (177)
T cd05006 104 VLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLEL-----ADIEIHVPSD 155 (177)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhh-----CCEEEEeCCC
Confidence 345567788888888888888888888665554322233332 3346666653
No 310
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.74 E-value=1.4e+02 Score=29.93 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=39.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC-hhHHHHHHHHHhhcCCeEEEE
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~-~~~~~~~~~~~~~~g~~v~i~ 331 (438)
..++.+...+.++..+++|+.+.....-+|+. |+.+.++++.+++-|++++-.
T Consensus 109 ~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 109 HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45567778888888888888887777666765 577777888888778885433
No 311
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=37.36 E-value=3.8e+02 Score=25.75 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC--H-HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD--L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD--~-~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..++++++...|. ....+..|++++...++ + .....+.+.+.+.|+.+... ..+..++...++
T Consensus 32 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 109 (328)
T PRK11303 32 DKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIA--CSDDQPDNEMRC 109 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHH
Confidence 4566666666666554320 01123567777743222 2 22334556677889886543 346677777778
Q ss_pred HHHHhhcCCeEEEEEcCCCC--CchhhhhcCCCCCEEEe
Q 013695 318 ASSAHERGIEIIIAGAGGAA--HLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~~--~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++.+|....... .....+. ....|||-+
T Consensus 110 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~-~~~iPvV~v 147 (328)
T PRK11303 110 AEHLLQRQVDALIVSTSLPPEHPFYQRLQ-NDGLPIIAL 147 (328)
T ss_pred HHHHHHcCCCEEEEcCCCCCChHHHHHHH-hcCCCEEEE
Confidence 87777888996666432211 1112222 234688765
No 312
>PRK06455 riboflavin synthase; Provisional
Probab=36.92 E-value=3e+02 Score=24.34 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=54.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcC--CcE-EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFS--VPH-EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G--~~~-~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
+++|+...-++......+.+.|+++| .++ ..+|-++.=.|-...+++ +..+++.+|+.. -
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~---~~~~yDaVIaLG-------~------- 65 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLI---EEEGCDIVMALG-------M------- 65 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH---hcCCCCEEEEec-------c-------
Confidence 57777766666666777789999977 443 234434444455544444 455688777642 0
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC
Q 013695 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN 386 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~ 386 (438)
|+.++...---+....=|..+|+..|+|++.|.+..
T Consensus 66 --VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v~vhe 101 (155)
T PRK06455 66 --PGPTEKDKYCAHEASIGLIMAQLMTNKHIIEVFVHE 101 (155)
T ss_pred --eeccCcchhHHHHHHHHHHHHHhhhCCCEEEEEecc
Confidence 122222100000111116689999999999776654
No 313
>PRK14674 hypothetical protein; Provisional
Probab=36.88 E-value=1e+02 Score=26.44 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013695 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
-++.|.+.++.-|| + +...||++..+++.+.|+|+-.|.+.+
T Consensus 11 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVK~R~~~~ 60 (133)
T PRK14674 11 AEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGN 60 (133)
T ss_pred HHHHHHHHHHHCCCEEeEEeeecCCCCEeEEEEeCCEEEEEEEEecCCCC
Confidence 45666777776655 3 566799888777789999999998643
No 314
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=36.69 E-value=1.5e+02 Score=29.40 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEEecC------CCh-hHHHHHHHHHhhcCCeEEEEEcCCC--CC
Q 013695 270 LPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVSAH------RTP-DLMFSYASSAHERGIEIIIAGAGGA--AH 338 (438)
Q Consensus 270 ~~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s~h------~~~-~~~~~~~~~~~~~g~~v~i~~ag~~--~~ 338 (438)
...|.|++-|. .+....+.+.+.|+.+|+++...-.... +++ +|..++..-+.+..++++.++-||- +.
T Consensus 10 gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~r 89 (313)
T COG1619 10 GDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNR 89 (313)
T ss_pred CCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhh
Confidence 34677776543 3467888899999999998654322222 233 5666666667888899888888764 45
Q ss_pred chhhhhcC----CCCCEEEe
Q 013695 339 LPGMVAAR----TPLPVIGV 354 (438)
Q Consensus 339 l~~~i~~~----~~~pVI~~ 354 (438)
|-..|-.. ..++.||-
T Consensus 90 lLp~ld~~~i~~~pKifiGy 109 (313)
T COG1619 90 LLPYLDYDLIRNHPKIFIGY 109 (313)
T ss_pred hhhhcchHHHhcCCceEEEe
Confidence 55444432 55666664
No 315
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.48 E-value=1.6e+02 Score=29.00 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=52.3
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CCCCEE-E
Q 013695 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVI-G 353 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVI-~ 353 (438)
+|.........++.+.|.+.|+.+..++.... ....++++++...+++.+|++ |+.+-+-.++.+. +..|.+ =
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via~-GGDGTv~evingl~~~~~~~Lgi 88 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIAA-GGDGTVNEVANGLAGTDDPPLGI 88 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEEe-cCcchHHHHHHHHhcCCCCceEE
Confidence 44445678888999999999999988877644 345667777677788877765 5665555555443 444424 4
Q ss_pred ecCCC
Q 013695 354 VPVRA 358 (438)
Q Consensus 354 ~p~~~ 358 (438)
+|.++
T Consensus 89 lP~GT 93 (301)
T COG1597 89 LPGGT 93 (301)
T ss_pred ecCCc
Confidence 56544
No 316
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=36.10 E-value=93 Score=25.23 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=36.0
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCC
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGI 326 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~ 326 (438)
+.++++-.+........+...|+++|++...-+++-. .++-.+.++++.+.|.
T Consensus 6 ~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~ 58 (123)
T PF01522_consen 6 KSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGH 58 (123)
T ss_dssp SEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT-
T ss_pred CEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHH
Confidence 4447777777788899999999999999777766543 4444566777777773
No 317
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=36.10 E-value=2.8e+02 Score=24.20 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=64.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHH--cCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc---CCCCCchhhhhcC
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTM--FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAAR 346 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~--~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~~ 346 (438)
+++++. -|+-|+.+.+-+..-+. -++++.+| -- |-+.+++ .-|.+|..... ||...+...|+..
T Consensus 4 ~IALIA-HD~kK~~l~~f~~~~~~~L~~h~L~AT----gT----TG~~i~~--~tgL~V~~~~SGplGGDqQIga~Ia~g 72 (143)
T TIGR00160 4 HIALIA-HDKKKQDLVNFVQQHKPLLSQHDLYAT----GT----TGNLISR--ATGLNINAMLSGPMGGDQQIGALIAEG 72 (143)
T ss_pred eEEEEe-cccchHHHHHHHHHHHHHHcCCCEEEC----cc----HHHHHHH--HHCCCeEEeccCCccHHHHHHHHHHhC
Confidence 454554 56667777766655443 45566666 22 5555653 34788776666 6777899999999
Q ss_pred CCCCEEEecCC---CCCCCChhhHHHhhcCCCCCceEE
Q 013695 347 TPLPVIGVPVR---ASALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 347 ~~~pVI~~p~~---~~~~~g~~~l~s~~~~~~gip~~t 381 (438)
...-||=..-+ ...--...+|+| ++.-.+||++|
T Consensus 73 ~id~vIFf~DPl~~~phepDi~aLlR-lc~v~nIP~At 109 (143)
T TIGR00160 73 KIDAVIFFWDPLNAQPHEPDVKALLR-LCTVWNIPLAT 109 (143)
T ss_pred CCCEEEEecCCCCCCCCCcCHHHHHH-HHHhhCccccc
Confidence 99999976532 223345676664 56667899997
No 318
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.08 E-value=1.7e+02 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCC---ChhHHHHHHHHHhhcCCe
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHR---TPDLMFSYASSAHERGIE 327 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~---~~~~~~~~~~~~~~~g~~ 327 (438)
+.+.+.++.+.+++.|+++...+..+.| +++.+.++++.+.+.|++
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455555555555555555554433343 455555555555555554
No 319
>PLN02754 chorismate synthase
Probab=36.02 E-value=1e+02 Score=31.64 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCcch
Q 013695 313 LMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATN 389 (438)
Q Consensus 313 ~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~~~ 389 (438)
++.+.+.+++++|- .|.|++ ..-+.|||++ +..++.+|+.|+.+-|. || |--|.|+.++.
T Consensus 218 ~m~~~I~~ak~~GD-----------SlGGiv----ev~~~gvP~GLG~pvfdkLda~LA~Al~S--IpAVKGVEfG~GF~ 280 (413)
T PLN02754 218 KMIAAIDAVRVRGD-----------SVGGVV----TCIVRNVPRGLGSPVFDKLEAELAKAMMS--LPATKGFEIGSGFA 280 (413)
T ss_pred HHHHHHHHHHHcCC-----------CcccEE----EEEEECCCCCCCccccccchHHHHHHhcC--cCceeEEEEccchh
Confidence 45566666665443 233332 3346678875 44578999989887773 34 44788887766
Q ss_pred HH
Q 013695 390 AG 391 (438)
Q Consensus 390 Aa 391 (438)
+|
T Consensus 281 ~a 282 (413)
T PLN02754 281 GT 282 (413)
T ss_pred hh
Confidence 55
No 320
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=35.84 E-value=4.2e+02 Score=25.69 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..+++.++...|. ...++..++++....++ ......+.+.+.+.|+.+.. .....+++...++
T Consensus 35 ~~tr~~V~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~ 112 (342)
T PRK10014 35 TATGERVNQAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFL--LQGGKDGEQLAQR 112 (342)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHH
Confidence 3455566565555544220 11123467777643222 23344456777889976543 3446677777888
Q ss_pred HHHHhhcCCeEEEEEcCCCCCchhhhh--cCCCCCEEEe
Q 013695 318 ASSAHERGIEIIIAGAGGAAHLPGMVA--ARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~~~~pVI~~ 354 (438)
++.+...+++.+|...... .....+. .....|||-+
T Consensus 113 ~~~l~~~~vdgiIi~~~~~-~~~~~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 113 FSTLLNQGVDGVVIAGAAG-SSDDLREMAEEKGIPVVFA 150 (342)
T ss_pred HHHHHhCCCCEEEEeCCCC-CcHHHHHHHhhcCCCEEEE
Confidence 8888888899777764322 2222222 1235688866
No 321
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=35.67 E-value=4.2e+02 Score=25.69 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=49.8
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhcC
Q 013695 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAAR 346 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~ 346 (438)
..|+++....++ ......+.+.+.++|+.+... ..+.++++..++++.+..++++.+|+.... .......+...
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~ 137 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILC--NAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEY 137 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc
Confidence 467777643222 233455556777889775543 557788888888888888889977765532 22222333322
Q ss_pred CCCCEEEe
Q 013695 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVI~~ 354 (438)
...|||-+
T Consensus 138 ~~iPvV~~ 145 (341)
T PRK10703 138 RHIPMVVM 145 (341)
T ss_pred CCCCEEEE
Confidence 35688755
No 322
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=35.50 E-value=2.2e+02 Score=26.31 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+...+....+...|..+....+. -.+++.+.+++..+.+ ..++++|-.+|.
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 43 AERAELAVAKLRQEGIKAHAAPFN-VTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 344444445554444332221111 2334445554443322 135566666653
No 323
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=35.38 E-value=3.1e+02 Score=24.15 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCHH----HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHh-hcCCeEEEEEcCCC----CCch
Q 013695 270 LPRIGIIMGSDSDLP----VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH-ERGIEIIIAGAGGA----AHLP 340 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~----~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~-~~g~~v~i~~ag~~----~~l~ 340 (438)
..++++++.|++-.. ...-++..|+++|+++..... ..-+++.+.+.++++- ..+++++++..|.+ ...+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 356777766652111 122445668899998543211 2455676777776652 34688888765433 3445
Q ss_pred hhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCC-CCc
Q 013695 341 GMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPR-GVP 378 (438)
Q Consensus 341 ~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~-gip 378 (438)
.+++..-. ..+.|..-+++.+.|-+ |-|
T Consensus 83 eal~~l~~----------~~l~G~~~~~~~i~~~p~G~~ 111 (163)
T TIGR02667 83 EALEPLFD----------KTVEGFGELFRQLSYEEIGTS 111 (163)
T ss_pred HHHHHHHC----------CcCCcHHHHHHHHhhcccCHH
Confidence 55443222 22335544567777743 655
No 324
>PRK11175 universal stress protein UspE; Provisional
Probab=35.14 E-value=2e+02 Score=27.67 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhh--------hhcCCCCCEEEecC
Q 013695 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM--------VAARTPLPVIGVPV 356 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~--------i~~~~~~pVI~~p~ 356 (438)
+.++...+...|++++..+. .++.|.+ .+++.+++++++.+|..+-+...+.+. +..++..||+-+|.
T Consensus 71 l~~~~~~~~~~~~~~~~~v~-~~g~~~~--~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 71 IREQAKPYLDAGIPIEIKVV-WHNRPFE--AIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHHHHHHHhhcCCceEEEEe-cCCCcHH--HHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecc
Confidence 34444455556666655443 2343322 233333566777777666333333322 33456777777775
No 325
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=35.13 E-value=4.2e+02 Score=25.57 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+.|..++++++..-|. ....++.|+++....++ ......+.+.+.+.|+.+... .....++...++
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~ 111 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLA--HYGYKPEMEQER 111 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEe--cCCCCHHHHHHH
Confidence 4667777777776654320 01123467777643222 334455667788889876543 345567766777
Q ss_pred HHHHhhcCCeEEEEEcCCCCCchhhhh--cCCCCCEEEe
Q 013695 318 ASSAHERGIEIIIAGAGGAAHLPGMVA--ARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~~~~pVI~~ 354 (438)
++.+..++++.+|... .. .....+. .....|||.+
T Consensus 112 ~~~~~~~~vdgiI~~~-~~-~~~~~~~~l~~~~iPvV~~ 148 (331)
T PRK14987 112 LESMLSWNIDGLILTE-RT-HTPRTLKMIEVAGIPVVEL 148 (331)
T ss_pred HHHHHhcCCCEEEEcC-CC-CCHHHHHHHHhCCCCEEEE
Confidence 7777788899666643 11 1122222 1235688865
No 326
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=35.11 E-value=1.3e+02 Score=28.58 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhH-----------HHHHHHHHhhcCCeEEE
Q 013695 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL-----------MFSYASSAHERGIEIII 330 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~-----------~~~~~~~~~~~g~~v~i 330 (438)
.+|.+.+.++++.|.+.|+++.+.|+-.+.+|.. +.++|+.++++|-.+..
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 4899999999999999999999988887776554 45567777788876554
No 327
>PRK10565 putative carbohydrate kinase; Provisional
Probab=34.94 E-value=4.8e+02 Score=27.76 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=37.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCChhHHHHHHHHHhhcC
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-HRTPDLMFSYASSAHERG 325 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-h~~~~~~~~~~~~~~~~g 325 (438)
..+|.|++|+-.+=-...-+++.|...|+++.+-..+. .+........++.+++-|
T Consensus 60 ~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 116 (508)
T PRK10565 60 ARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQESDKPLPEEAALAREAWLNAG 116 (508)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEECCcccCCHHHHHHHHHHHHcC
Confidence 35788999988888889999999999999887765542 222333443444444433
No 328
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.88 E-value=2e+02 Score=26.62 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=41.3
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|-+-.--..-++..++. ..+| ++.. .+.+...+....+...|.++....+. -.+++.+.++
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~i~~~~~~~~~~~~D-~~~~~~~~~~ 77 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQA----------GAEV-ILNG--RDPAKLAAAAESLKGQGLSAHALAFD-VTDHDAVRAA 77 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHc----------CCEE-EEEe--CCHHHHHHHHHHHHhcCceEEEEEcc-CCCHHHHHHH
Confidence 3566666554444444444331 1244 3332 33444555556666656544332222 3345555665
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013695 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++... ..++++|-.+|..
T Consensus 78 ~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 554332 2466777777643
No 329
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=34.78 E-value=2.2e+02 Score=26.67 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=41.3
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.-...-+.+.+.. ..+| ++.. .+.+...+....+...|.++....+- -.+++.+.++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~----------G~~v-v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~ 77 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKA----------GATI-VFND--INQELVDKGLAAYRELGIEAHGYVCD-VTDEDGVQAM 77 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHC----------CCeE-EEEe--CCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHH
Confidence 3556665554444444444331 2244 3332 33445555666666666543322222 2345556666
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013695 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+..+ ..++++|-.+|.
T Consensus 78 ~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHhCCCCCEEEECCCC
Confidence 654322 236788877764
No 330
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=34.77 E-value=1.8e+02 Score=21.19 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
.+.-+.+..+.+.|+++|++++..-+ ...++...++.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i--~~~~~~~~~~~ 43 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDV--DGDPALREEMI 43 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEEC--CCCHHHHHHHH
Confidence 35679999999999999999865533 44455555544
No 331
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=34.51 E-value=3.1e+02 Score=26.43 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE----Eec---------CCC
Q 013695 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI----VSA---------HRT 310 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v----~s~---------h~~ 310 (438)
.|.++|.+.+.+.+.+- ....+-+-|+. ...+..+.|.+.|+++..++ -+. -|+
T Consensus 91 ~s~e~av~nA~rl~ke~---------GadaVKlEGg~----~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~ 157 (261)
T PF02548_consen 91 ASPEQAVRNAGRLMKEA---------GADAVKLEGGA----EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKT 157 (261)
T ss_dssp SSHHHHHHHHHHHHHTT---------T-SEEEEEBSG----GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTS
T ss_pred CCHHHHHHHHHHHHHhc---------CCCEEEeccch----hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecC
Confidence 57889999998887732 12344677765 45677888999999988776 111 145
Q ss_pred hhHHHHHH---HHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013695 311 PDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 311 ~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
.+...+++ +.+++.|+-.++.- .-...|...|......|+||+=.
T Consensus 158 ~~~a~~l~~~A~ale~AGaf~ivlE-~vp~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 158 AEEAEKLLEDAKALEEAGAFAIVLE-CVPAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEE-SBBHHHHHHHHHHSSS-EEEESS
T ss_pred HHHHHHHHHHHHHHHHcCccEEeee-cCHHHHHHHHHHhCCCCEEecCC
Confidence 55555555 44577787644432 35668999999999999999854
No 332
>PRK12463 chorismate synthase; Reviewed
Probab=34.46 E-value=1.3e+02 Score=30.70 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCC-CC-ChhhHHHhhcCCCCCc-eEEEEeCC
Q 013695 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASA-LD-GLDSLLSIVQMPRGVP-VATVAINN 386 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~-~~-g~~~l~s~~~~~~gip-~~tv~i~~ 386 (438)
+++.+.+.++++.|- .|.|++ ..-|.|||++ +.. +| .+|+.|+.+-|. || |--|.|+.
T Consensus 200 ~~m~~~I~~ak~~gD-----------SlGGiv----ev~~~gvP~GLGspv~fd~kLda~LA~A~ms--IpAVKgVE~G~ 262 (390)
T PRK12463 200 QEMMDAIDNAKSSGD-----------SIGGIV----EVIAEGMPIGVGSYVHYDRKLDAKLAGAIMS--INAFKGAEIGV 262 (390)
T ss_pred HHHHHHHHHHHHhCC-----------CCceEE----EEEEECCCCCCCCCccccccchHHHHHHhcC--cCceeEEEEcc
Confidence 345666666665443 333333 2346677875 333 66 899999887773 33 44788887
Q ss_pred cchHH
Q 013695 387 ATNAG 391 (438)
Q Consensus 387 ~~~Aa 391 (438)
++.+|
T Consensus 263 Gf~~a 267 (390)
T PRK12463 263 GFEAA 267 (390)
T ss_pred chhhh
Confidence 76655
No 333
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=34.45 E-value=2.4e+02 Score=26.86 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 288 ~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+.+.++++|+.+...-.+...++++..++++.+.+++++.+|+..
T Consensus 20 gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 20 GMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred HHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3445556677665543221123455555666666677777555543
No 334
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=33.94 E-value=2.4e+02 Score=26.10 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=5.1
Q ss_pred CeEEEEEcC
Q 013695 326 IEIIIAGAG 334 (438)
Q Consensus 326 ~~v~i~~ag 334 (438)
++++|-++|
T Consensus 85 ~d~vi~~ag 93 (262)
T PRK13394 85 VDILVSNAG 93 (262)
T ss_pred CCEEEECCc
Confidence 556665554
No 335
>PRK14680 hypothetical protein; Provisional
Probab=33.92 E-value=1.4e+02 Score=25.66 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + ....||++..+++.+.|+||-.|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~ 60 (134)
T PRK14680 11 HGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAH 60 (134)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEeCCEEEEEEEEecCCC
Confidence 445667777776655 2 45689988877778999999999763
No 336
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=33.87 E-value=3.6e+02 Score=25.92 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHH-HcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013695 281 SDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~-~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
+....-..+++.|. +.|++.-.+++.-.++...+.+++..+...|++=+.+..|-.
T Consensus 41 ~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 41 STRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred CcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 34556667777777 679998888777789999999999999999999777666533
No 337
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.69 E-value=2e+02 Score=21.46 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=27.2
Q ss_pred cCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 296 FSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 296 ~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.+=+--+-+.|..|.+.++.+.++.++++|++++...
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3333445567788888889999999999999865543
No 338
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=33.60 E-value=60 Score=33.81 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 013695 282 DLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~ 303 (438)
......++.+.|+++|+++-..
T Consensus 157 ~~~~~~~iv~~L~~~~I~~L~v 178 (443)
T PRK06830 157 GPQDPEEIVDTLERMNINILFV 178 (443)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 3445555666666666664433
No 339
>PRK10426 alpha-glucosidase; Provisional
Probab=33.59 E-value=3.1e+02 Score=30.13 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=60.8
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec---------C
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA---------H 308 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~---------h 308 (438)
..+..|+|..++.++.....+..+.+ |.-..-++..|-.+..+.+.++++.+++.|+++++-++-- +
T Consensus 179 ~y~~~G~~~~~vi~~yt~ltGr~p~~----P~Wal~G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g 254 (635)
T PRK10426 179 LRFECADTYISLLEKLTALFGRQPEL----PDWAYDGVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFG 254 (635)
T ss_pred EEEEeCCCHHHHHHHHHHhhCCCCCC----ChhhccCccccccCCHHHHHHHHHHHHHcCCCeeEEEEeccccccccccc
Confidence 34678999999999999888876533 1111102333444446789999999999999998765431 0
Q ss_pred ------------CChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 309 ------------RTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 309 ------------~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|=| ...++++++.+.|++++..+-
T Consensus 255 ~~~~~~~~~d~~~FP-dp~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 255 KRLMWNWKWDSERYP-QLDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred ccccccceEChhhCC-CHHHHHHHHHHCCCEEEEEEc
Confidence 111 135677788899999666654
No 340
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=33.50 E-value=1.6e+02 Score=27.01 Aligned_cols=60 Identities=13% Similarity=-0.036 Sum_probs=39.2
Q ss_pred eEEEEEecCC------CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013695 272 RIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 272 ~v~iv~gs~s------D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
.|+|+..+.+ -.+.+.+++..|...|+.++..... +.+ ...=++.++..|+++.|.+-..
T Consensus 12 qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~-~~s---~g~K~~~ae~~GvP~~I~IG~~ 77 (202)
T cd00862 12 QVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRD-NYT---PGWKFNDWELKGVPLRIEIGPR 77 (202)
T ss_pred eEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCC-CCC---HhHHHHHHHhCCCCEEEEECcc
Confidence 5656655444 3567888889999999998887222 213 3334445688899977776533
No 341
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.43 E-value=2.8e+02 Score=26.85 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 282 DLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 282 D~~~~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
|...+.++.+.+++. ++++.+.+. . +.+++.++++.+++.|++.+.+
T Consensus 138 ~~~~~~eiv~~vr~~~~~Pv~vKl~-~--~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 138 DPEAVAEIVKAVKKATDVPVIVKLT-P--NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeC-C--CchhHHHHHHHHHHcCCCEEEE
Confidence 455666666666655 677766642 1 2234555555566667765444
No 342
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=33.39 E-value=3.4e+02 Score=23.92 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 310 TPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|+.+.++.+..++ .+.+|.+.
T Consensus 55 ~~~~~~~~~~~i~~--AD~iIi~t 76 (174)
T TIGR03566 55 LPPDAERILQAIES--ADLLVVGS 76 (174)
T ss_pred CCHHHHHHHHHHHH--CCEEEEEC
Confidence 46677778777765 67777766
No 343
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=33.32 E-value=4.2e+02 Score=26.08 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=37.4
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-++|-.++..++.+.++.+.++|++++.+..++ .|...-..+ -.++|-+|..
T Consensus 69 lvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g--~L~~~a~~~-~~~~i~vP~~ 122 (308)
T TIGR02128 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGG--RLEEMAKER-GLDVIKIPKG 122 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCc--HHHHHHHhc-CCeEEEcCCC
Confidence 45567778888888888888888888855544332 466654333 6788888875
No 344
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.12 E-value=56 Score=32.89 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=21.4
Q ss_pred HHHHhhcCCeEEEEEcC-CCCCchhhhhcCCCCCEEEecCC
Q 013695 318 ASSAHERGIEIIIAGAG-GAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag-~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
++++++.|++.+|++-| ++..-+..++..-..||||+|-.
T Consensus 87 ~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkT 127 (347)
T COG0205 87 AENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKT 127 (347)
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCC
Confidence 33444455554444432 34444444554444889999853
No 345
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=33.11 E-value=62 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=25.2
Q ss_pred CeEEEEEecCCCH-----HHHHHHHHHHHHcCCcEEEE
Q 013695 271 PRIGIIMGSDSDL-----PVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 271 ~~v~iv~gs~sD~-----~~~~~~~~~L~~~G~~~~~~ 303 (438)
.+|++++|+.|.. .-...+++.|.+.||++..-
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~ 41 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPI 41 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEE
Confidence 5799999998873 44567888888899886533
No 346
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.70 E-value=3.3e+02 Score=24.20 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
..+| +|.|.. .-....+++.|.+.|+.+.+. +|+.+++.+.++ .++++|.+.|..
T Consensus 44 gk~v-lViG~G--~~~G~~~a~~L~~~g~~V~v~----~r~~~~l~~~l~-----~aDiVIsat~~~ 98 (168)
T cd01080 44 GKKV-VVVGRS--NIVGKPLAALLLNRNATVTVC----HSKTKNLKEHTK-----QADIVIVAVGKP 98 (168)
T ss_pred CCEE-EEECCc--HHHHHHHHHHHhhCCCEEEEE----ECCchhHHHHHh-----hCCEEEEcCCCC
Confidence 3456 666653 123455899999999865544 898887777773 368888877654
No 347
>PRK07109 short chain dehydrogenase; Provisional
Probab=32.60 E-value=2.7e+02 Score=27.53 Aligned_cols=51 Identities=12% Similarity=0.000 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAG 334 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag 334 (438)
.+.+.++...+...|.++....+- -.+++.+.+.++...+ ..++++|-.+|
T Consensus 42 ~~~l~~~~~~l~~~g~~~~~v~~D-v~d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 42 EEGLEALAAEIRAAGGEALAVVAD-VADAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEec-CCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 444555555555555543322111 1234445554443322 14566666665
No 348
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.44 E-value=70 Score=31.10 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=42.1
Q ss_pred EEEEE--ecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH-HHHhhcCCeEEEEEcCCCCCchhhhh-cCCC
Q 013695 273 IGIIM--GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA-SSAHERGIEIIIAGAGGAAHLPGMVA-ARTP 348 (438)
Q Consensus 273 v~iv~--gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~-~~~~~~g~~v~i~~ag~~~~l~~~i~-~~~~ 348 (438)
++|+. +.......+.++++.|++.|+.+..........+.. .... ......+++.+|++ |+.+.+-.++. ....
T Consensus 3 v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~d~vi~i-GGDGTlL~a~~~~~~~ 80 (277)
T PRK03708 3 FGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEF-SEEDVLPLEEMDVDFIIAI-GGDGTILRIEHKTKKD 80 (277)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcc-cccccccccccCCCEEEEE-eCcHHHHHHHHhcCCC
Confidence 55553 223345567777788888898876641111010000 0000 11122346655544 66766655554 1235
Q ss_pred CCEEEecCC
Q 013695 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVI~~p~~ 357 (438)
.||+++|.+
T Consensus 81 ~pi~gIn~G 89 (277)
T PRK03708 81 IPILGINMG 89 (277)
T ss_pred CeEEEEeCC
Confidence 799999985
No 349
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.38 E-value=1.2e+02 Score=23.73 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013695 287 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 287 ~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
..+...|++.||++.-- -+.. ...++++++ +.|...++-++=...+..||||-
T Consensus 11 s~v~~~L~~~GyeVv~l-~~~~-------------~~~~~daiV-vtG~~~n~mg~~d~~~~~pVInA 63 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDL-ENEQ-------------DLQNVDAIV-VTGQDTNMMGIQDTSTKVPVINA 63 (80)
T ss_pred hHHHHHHHHCCCEEEec-CCcc-------------ccCCcCEEE-EECCCcccccccccccCceEEec
Confidence 35677889999885321 0101 123677666 45777777777556778899885
No 350
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=32.02 E-value=4.6e+02 Score=25.63 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHH-HHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013695 282 DLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~L-~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
....+.+++..+ .+.|++.-.++..-.++...+.+.+..+...|++=+.+..|-
T Consensus 66 ~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 66 ERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 566666666666 678999877777778899999999999999999966666643
No 351
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=32.00 E-value=1.8e+02 Score=28.03 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=42.1
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCc---EEEEEEecCCChhHHH
Q 013695 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVP---HEVRIVSAHRTPDLMF 315 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~---~~~~v~s~h~~~~~~~ 315 (438)
++++|.+..--++.+.+.+.. ..+| ++++. +.+...+.+..+...|.. +... ..-++..+...
T Consensus 11 alVTG~s~GIG~aia~~la~~----------Ga~v-~i~~r--~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~~~ 76 (270)
T KOG0725|consen 11 ALVTGGSSGIGKAIALLLAKA----------GAKV-VITGR--SEERLEETAQELGGLGYTGGKVLAI-VCDVSKEVDVE 76 (270)
T ss_pred EEEECCCChHHHHHHHHHHHC----------CCEE-EEEeC--CHHHHHHHHHHHHhcCCCCCeeEEE-ECcCCCHHHHH
Confidence 345555555444444444431 2345 44433 455666666666666664 2222 22244444444
Q ss_pred HHHHHH-hh-cC-CeEEEEEcCCCC
Q 013695 316 SYASSA-HE-RG-IEIIIAGAGGAA 337 (438)
Q Consensus 316 ~~~~~~-~~-~g-~~v~i~~ag~~~ 337 (438)
+..... ++ .| +++.+-.||...
T Consensus 77 ~l~~~~~~~~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 77 KLVEFAVEKFFGKIDILVNNAGALG 101 (270)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcCC
Confidence 444333 22 23 778887776543
No 352
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=31.96 E-value=2.6e+02 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=25.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
..|.|.+ .+.-+.+..+.+.|+++|++++..-+
T Consensus 8 ~~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdi 40 (99)
T TIGR02189 8 KAVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEI 40 (99)
T ss_pred CCEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEc
Confidence 4454444 46789999999999999999865543
No 353
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=31.93 E-value=1.5e+02 Score=22.28 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=25.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
.+|.+.+ .+.-+.+..+.+.|+++|++++..-+
T Consensus 8 ~~V~ly~--~~~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 8 ESVVVFT--KPGCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCEEEEE--CCCCHhHHHHHHHHHHcCCCcEEEEC
Confidence 4564444 45789999999999999999876543
No 354
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=31.82 E-value=1.8e+02 Score=21.61 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
.+.-+.+..+...|+++|++++..-. ...++...++.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di--~~~~~~~~~~~ 42 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRV--DGDPALRDEMM 42 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEe--cCCHHHHHHHH
Confidence 45679999999999999999866533 34454444443
No 355
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=31.79 E-value=2.8e+02 Score=26.70 Aligned_cols=101 Identities=21% Similarity=0.166 Sum_probs=67.1
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEE----Eec---------C
Q 013695 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRI----VSA---------H 308 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v----~s~---------h 308 (438)
...|.+++++.|.+.+.+- ....+-+-|+ +.+.+..+.|.+.|+++..++ -|. -
T Consensus 88 y~~s~~~a~~nA~r~~ke~---------gA~aVKlEGG----~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqG 154 (268)
T COG0413 88 YEVSPEQALKNAARLMKEA---------GADAVKLEGG----EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQG 154 (268)
T ss_pred cCCCHHHHHHHHHHHHHHh---------CCCEEEEcCC----HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeec
Confidence 4568899999999888742 1233356666 778888899999999976554 111 2
Q ss_pred CChhHHHHHH---HHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013695 309 RTPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 309 ~~~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
|+.+...+.+ +.+++-|+-.++ .-+-...|+.-|......|+||.=-
T Consensus 155 r~~~~a~~l~~dA~ale~AGaf~iv-lE~Vp~~lA~~IT~~lsiPtIGIGA 204 (268)
T COG0413 155 RTEESAEKLLEDAKALEEAGAFALV-LECVPAELAKEITEKLSIPTIGIGA 204 (268)
T ss_pred CCHHHHHHHHHHHHHHHhcCceEEE-EeccHHHHHHHHHhcCCCCEEeecC
Confidence 3334444444 335666664222 2234568889999999999999844
No 356
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.78 E-value=3.9e+02 Score=25.74 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=57.0
Q ss_pred CCeEEEEEecCC--CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC--CCCchhh--h
Q 013695 270 LPRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGM--V 343 (438)
Q Consensus 270 ~~~v~iv~gs~s--D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~--i 343 (438)
..+++++..+.. .....+.+.+...++|+++..... .+.+++.+.++.+.+ ..+++...... ..+...+ .
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v---~~~~~~~~~~~~l~~-~~da~~~~~~~~~~~~~~~i~~~ 206 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV---PSSEDLEQALEALAE-KVDALYLLPDNLVDSNFEAILQL 206 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE---SSGGGHHHHHHHHCT-T-SEEEE-S-HHHHHTHHHHHHH
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec---CcHhHHHHHHHHhhc-cCCEEEEECCcchHhHHHHHHHH
Confidence 357877774322 135666777778889998754433 456667777776654 35555554421 1111122 2
Q ss_pred hcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC---CcchHHHHHHHHHcCCCh
Q 013695 344 AARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN---NATNAGLLAVRMLGFGDA 403 (438)
Q Consensus 344 ~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~---~~~~Aa~~a~~il~~~~~ 403 (438)
+.....||++.=.. .+..|. ++.+.++ -|..||.+|.+||.-.++
T Consensus 207 ~~~~~iPv~~~~~~--------------~v~~Ga-l~~~~~~~~~~G~~Aa~~a~~IL~G~~~ 254 (294)
T PF04392_consen 207 ANEAKIPVFGSSDF--------------YVKAGA-LGGYSVDYYEQGRQAAEMAVRILKGEKP 254 (294)
T ss_dssp CCCTT--EEESSHH--------------HHCTT--SEEEE--HHHHHHHHHHHHHHHCTT--G
T ss_pred HHhcCCCEEECCHH--------------HhcCCc-EEEEccCHHHHHHHHHHHHHHHHCCCCc
Confidence 34466777774211 112342 2233333 377899999999876544
No 357
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.53 E-value=4e+02 Score=24.68 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=49.6
Q ss_pred ecCCHHHHHHHHHHHhhh-ccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCC-----------
Q 013695 242 VGSSMGLVESRLNSLLKE-DSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR----------- 309 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~-i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~----------- 309 (438)
+|.+.+..++.+..+.+. ++. .-+..++-|-..+.+.++.+++.+..++++ ...+...|.
T Consensus 109 tG~~~~~il~nl~~l~~~g~~v-------~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 109 VKMNLPRVLENLRLLVSEGVNV-------IPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred HCCCHHHHHHHHHHHHhCCCcE-------EEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCC
Confidence 355666666666655542 110 124446666555678899999999998876 455555565
Q ss_pred ----------ChhHHHHHHHHHhhcCCeEEE
Q 013695 310 ----------TPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 310 ----------~~~~~~~~~~~~~~~g~~v~i 330 (438)
+++.+.++.+-+++.|++|.|
T Consensus 181 ~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 181 TWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred cCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 233344444456777888865
No 358
>PRK14688 hypothetical protein; Provisional
Probab=31.49 E-value=1.6e+02 Score=24.85 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + +...||++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVK~R~~~ 60 (121)
T PRK14688 11 FGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRL 60 (121)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeeCCCCcEeEEEeeCCEEEEEEEEecCCC
Confidence 345666676666655 3 56679988877778999999999763
No 359
>PLN02780 ketoreductase/ oxidoreductase
Probab=31.33 E-value=2.3e+02 Score=27.86 Aligned_cols=86 Identities=9% Similarity=0.132 Sum_probs=40.9
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCC-hhHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRT-PDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~-~~~~ 314 (438)
.++.+|.+-.=-..-+.+.+.. ..+| ++.+ .+.+.++++++.+... +..+....+-...+ .+..
T Consensus 55 ~~lITGAs~GIG~alA~~La~~----------G~~V-il~~--R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~ 121 (320)
T PLN02780 55 WALVTGPTDGIGKGFAFQLARK----------GLNL-VLVA--RNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGV 121 (320)
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCCE-EEEE--CCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHH
Confidence 3566776655444444444431 1245 3443 3566677777777653 23322222222222 2333
Q ss_pred HHHHHHHhhcCCeEEEEEcCCC
Q 013695 315 FSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 315 ~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
.++.+......++++|-.||..
T Consensus 122 ~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 122 KRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred HHHHHHhcCCCccEEEEecCcC
Confidence 3344333332345788888754
No 360
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=31.33 E-value=2.7e+02 Score=22.76 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----CchhhhhcCCCCCEEEec
Q 013695 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~~~~~~pVI~~p 355 (438)
++|......+...|+.+|..+.+. + ..++............++..|... .+-.+++.....||+-+-
T Consensus 6 ddd~~R~~~L~~ILeFlGe~~~~~--~-------~~~~~~~~~~~~~~~~~v~~g~~~~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 6 DDDAERRQRLSTILEFLGEQCEAV--S-------SSDWSQADWSSPWEACAVILGSCSKLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CCcHHHHHhhhhhhhhcCCCeEEe--c-------HHHHHHhhhhcCCcEEEEEecCchhHHHHHHHHHhhCCCCCEEEEC
Confidence 678999999999999999997665 1 122222223334444444444333 555566666788888775
Q ss_pred CC
Q 013695 356 VR 357 (438)
Q Consensus 356 ~~ 357 (438)
..
T Consensus 77 ~~ 78 (109)
T PF06490_consen 77 EH 78 (109)
T ss_pred CC
Confidence 43
No 361
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=31.32 E-value=4.8e+02 Score=27.92 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=42.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|+..++.....+.+++..|...|+.++.... -+ .+.+-++.+...|++..+++.
T Consensus 471 ~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~--~~---sl~~q~k~A~~~g~~~~iiiG 528 (563)
T TIGR00418 471 VQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR--NE---RLGKKIREAQKQKIPYMLVVG 528 (563)
T ss_pred ceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC--CC---CHHHHHHHHHhcCCCEEEEEc
Confidence 45767777777789999999999999999887632 22 255556666888999555543
No 362
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.30 E-value=1e+02 Score=30.06 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHHHhhcCCeEEEEEcCCCCCchhhh
Q 013695 314 MFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
+.+.++++.++|+.+++.+.-..+..-|++
T Consensus 105 ~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~ 134 (281)
T PRK12360 105 IQNIVEEYYNKGYSIIIVGDKNHPEVIGIN 134 (281)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCceeeEec
Confidence 444555667778888888765555555553
No 363
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.29 E-value=1.8e+02 Score=25.37 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=41.4
Q ss_pred CeEEE-EEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGI-IMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~i-v~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++|.+ -+|.|.--.-..-+++.|...||++..+ +.++||++..+-. -++.+.|+.++.
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~--g~~~tp~e~v~aA---~~~dv~vIgvSs 71 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINL--GLFQTPEEAVRAA---VEEDVDVIGVSS 71 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEec--CCcCCHHHHHHHH---HhcCCCEEEEEe
Confidence 44433 3667777778888999999999987655 6788887655544 445677777765
No 364
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=30.71 E-value=2.8e+02 Score=24.79 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEec--CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHH
Q 013695 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~ 321 (438)
.++.+|+..|.+.....+. ...++++|+..+ +.|.....++++.+++.|+.+++- +..-.++.+.++.
T Consensus 86 t~l~~aL~~A~~~l~~~~~-----~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~I--giG~~~~~L~~ia--- 155 (183)
T cd01453 86 PSLQNGLEMALESLKHMPS-----HGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVI--GLSAEMHICKEIC--- 155 (183)
T ss_pred hhHHHHHHHHHHHHhcCCc-----cCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEE--EechHHHHHHHHH---
Confidence 5677888887776653221 112445555443 233334567888999999876543 3322222222222
Q ss_pred hhcCCeEEEEEcCCCCCchhhhhcCC
Q 013695 322 HERGIEIIIAGAGGAAHLPGMVAART 347 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i~~~~ 347 (438)
+.-|=+.+.+.. +.+|+.++...+
T Consensus 156 ~~tgG~~~~~~~--~~~l~~~~~~~~ 179 (183)
T cd01453 156 KATNGTYKVILD--ETHLKELLLEHV 179 (183)
T ss_pred HHhCCeeEeeCC--HHHHHHHHHhcC
Confidence 334445555432 357877776644
No 365
>PRK07478 short chain dehydrogenase; Provisional
Probab=30.67 E-value=2.4e+02 Score=26.09 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=44.8
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+..=-..-+...... ..+| ++.+ .+.+...++...+...|.++....+. -.+++.+.+.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~----------G~~v-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 73 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFARE----------GAKV-VVGA--RRQAELDQLVAEIRAEGGEAVALAGD-VRDEAYAKAL 73 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 3566666544333333333321 1245 3333 23455666777777776554332222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013695 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ ..++++|-.||..
T Consensus 74 ~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 655433 2578888888753
No 366
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.61 E-value=2.6e+02 Score=27.03 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=56.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh-cCCeEEEEEcCCC--CCchhhhh---
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGGA--AHLPGMVA--- 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~-~g~~v~i~~ag~~--~~l~~~i~--- 344 (438)
++-++|+|.+| -...+.++.|.+.|+++-.. -|+-+++.+..+++++ .|++|.+..+..+ ..+..+..
T Consensus 6 ~~~~lITGASs--GIG~~~A~~lA~~g~~liLv----aR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 6 GKTALITGASS--GIGAELAKQLARRGYNLILV----ARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CcEEEEECCCc--hHHHHHHHHHHHCCCEEEEE----eCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence 44559998764 57789999999999999888 7888889988888765 4578888777543 34444433
Q ss_pred cC--CCCCEEEec
Q 013695 345 AR--TPLPVIGVP 355 (438)
Q Consensus 345 ~~--~~~pVI~~p 355 (438)
.. .+.-.||.-
T Consensus 80 ~~~~~IdvLVNNA 92 (265)
T COG0300 80 ERGGPIDVLVNNA 92 (265)
T ss_pred hcCCcccEEEECC
Confidence 22 455566654
No 367
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=30.61 E-value=1.7e+02 Score=28.72 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=44.5
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEec---CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhH
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDL 313 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~ 313 (438)
+.+--...+.+..+++=.....+.. ...+++|+.|+ ......++.+.+.|++.|-+++.-+.+ +=+|++
T Consensus 183 ~~~e~~~~~~~~~l~~R~~~i~ka~-------~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~-~i~~~k 254 (307)
T PF01866_consen 183 LSVEDISYDIERLLRRRYALIEKAK-------DAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVG-EINPAK 254 (307)
T ss_dssp --EEE----THHHHHHHHHHHHHHT-------T--EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEES-S--GGG
T ss_pred ceeecccccHHHHHHHHHHHHHHHh-------cCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEEC-CCCHHH
Confidence 3333234444444444333444332 24688899884 667888889999999999987666555 777888
Q ss_pred HHHHHHHHhhcCCeEEEEEc
Q 013695 314 MFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~a 333 (438)
+..|- +++++|..|
T Consensus 255 L~nf~------eid~fV~~a 268 (307)
T PF01866_consen 255 LANFP------EIDAFVQIA 268 (307)
T ss_dssp GTTS---------SEEEE-S
T ss_pred HhcCc------ccCEEEEec
Confidence 77764 478888765
No 368
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=30.59 E-value=1.8e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|...++.-|| + ....||++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGG 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345666666666555 3 46679988877778999999999763
No 369
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=30.41 E-value=4.2e+02 Score=24.15 Aligned_cols=48 Identities=10% Similarity=-0.062 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.....+.+.+.++|+.+... ..+.++++..+.++++...+++.+|...
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~~dgii~~~ 63 (259)
T cd01542 16 RTVKGILAALYENGYQMLLM--NTNFSIEKEIEALELLARQKVDGIILLA 63 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34444556677788776433 4466788777888877778888666654
No 370
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=30.40 E-value=83 Score=31.84 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=32.1
Q ss_pred c-EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc-------C--CCCcEEEeeccC
Q 013695 19 P-LMVKSKRLAYDGRGNAVAKSEEELSSAITALG-------G--FDRGLYVEKWAP 64 (438)
Q Consensus 19 P-vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~-------~--~~~~~lvEe~I~ 64 (438)
| ++||.+.+. -|.|+.-++|.+|+...-++-. + .-..+||||=|.
T Consensus 258 PfViVKADaGT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 258 PYVIVKADAGT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred CeEEEEcCCCC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 5 789997655 5789999999999987654432 1 115688888665
No 371
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.40 E-value=6e+02 Score=26.43 Aligned_cols=120 Identities=8% Similarity=-0.012 Sum_probs=64.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
.+++|.+++ + .....++.|.++|+++... .+.+.+++... .+++.- +-.+++..-+-...+-..+.......
T Consensus 327 krv~i~~g~--~--~~~~l~~~l~elGmevv~~-~t~~~~~~d~~-~l~~~~--~~~~~v~~~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 327 KKAAIYTGG--V--KSWSLVSALQDLGMEVVAT-GTQKGTEEDYA-RIRELM--GEGTVMLDDANPRELLKLLLEYKADL 398 (456)
T ss_pred CEEEEEcCC--c--hHHHHHHHHHHCCCEEEEE-eeecCCHHHHH-HHHHHc--CCCeEEEeCCCHHHHHHHHhhcCCCE
Confidence 466555544 3 3456777899999997654 33355555533 333222 12344433333346777777777888
Q ss_pred EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC------CcchHHHHHHHHHcCCChHHHHHH
Q 013695 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN------NATNAGLLAVRMLGFGDADLRARM 409 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~------~~~~Aa~~a~~il~~~~~~~~~~~ 409 (438)
+|+-.. -+.++...|||+..+.-+ +-.++..++-.+...-+..+|+-+
T Consensus 399 ~ig~~~-----------~~~~a~k~giP~i~~~~~~~~p~~Gy~G~~~l~~~i~~a~~~p~~~~~ 452 (456)
T TIGR01283 399 LIAGGK-----------ERYTALKLGIPFCDINHEREHPYAGYDGMVEFAREVDLTVHSPIWQLV 452 (456)
T ss_pred EEEccc-----------hHHHHHhcCCCEEEcccccCCCCcchhhHHHHHHHHHHHhcCChHHhh
Confidence 887421 122233457777644311 123555566666655555566544
No 372
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=30.30 E-value=1.9e+02 Score=28.51 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=43.0
Q ss_pred eEEEEEecC----CCHHHHHHHHHHHHHcCCcEEEEEEe------cCCChh-HHHHHHHHHhhcCCeEEEEEcCCC
Q 013695 272 RIGIIMGSD----SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~iv~gs~----sD~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~-~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
+|+|++-|. .+.+.+....+.|+.+|+++...-.. ..++++ |..++-+-+.+..++.++++.||.
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 77 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGD 77 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCccc
Confidence 455665442 22688899999999999997544321 123333 344455556788899999999875
No 373
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.17 E-value=2e+02 Score=27.83 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=48.2
Q ss_pred HHHHcCCcEEEEEE-e--cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013695 292 ILTMFSVPHEVRIV-S--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 292 ~L~~~G~~~~~~v~-s--~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
.++.+|++....+. + ..-+|+.+.++++..++.++++++.-...+..+...|+..+-.+|+.+
T Consensus 192 l~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 192 FEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred HHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 44678998654332 1 334688888899989999999999988888888889988887777665
No 374
>PHA03050 glutaredoxin; Provisional
Probab=30.16 E-value=3.1e+02 Score=22.42 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=24.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCC---cEEEEEEe
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVS 306 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s 306 (438)
++|.|.+ .+.-+.+..+.+.|+++|+ +|+..-+.
T Consensus 13 ~~V~vys--~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~ 49 (108)
T PHA03050 13 NKVTIFV--KFTCPFCRNALDILNKFSFKRGAYEIVDIK 49 (108)
T ss_pred CCEEEEE--CCCChHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 4564555 5669999999999999999 55444333
No 375
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=29.97 E-value=2e+02 Score=27.92 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=44.1
Q ss_pred CCCeEEEEEecCCCH-HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC
Q 013695 269 VLPRIGIIMGSDSDL-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~-~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
....|.|.+.+.+.+ ....+++..|=..||..|...- +.-+++++.++ +...|+..+|.++-
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~-~~~S~Eel~~~---~~~~gi~wiViikq 66 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYD-ASPSQEELQSY---CREDGISWIVIIKQ 66 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccc-cCCCHHHHHHH---HHHCCCCEEEEEec
Confidence 456787888777777 8889999999999999887421 12255555554 47889996666663
No 376
>PRK14682 hypothetical protein; Provisional
Probab=29.96 E-value=1.9e+02 Score=24.21 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCc-------e--eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A--GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~--G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + +...||++..+++.+.|+|+-.|.+.
T Consensus 9 ~gE~~A~~~L~~~Gy~Il~rN~r~~~~GEIDiIa~~~~~lvFVEVKtR~~~ 59 (117)
T PRK14682 9 KAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKT 59 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEECCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345566666666554 3 46679998877778999999999863
No 377
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=29.90 E-value=3.3e+02 Score=27.20 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=53.8
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEec---CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~ 314 (438)
.+.-...+.+..+++=...+.+.. ...+++|+.|+ ...+..+..+.+.|++.|.+++.-+.+ .=+|+++
T Consensus 207 ~~~~~~~~~~~~l~rR~~~I~ka~-------~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~-~in~~kL 278 (332)
T TIGR00322 207 EFTRIGEDAKQFVKVRALAISKAR-------KGKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLS-NVSPAKL 278 (332)
T ss_pred ceeEccccHHHHHHHHHHHHHHHh-------cCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHH
Confidence 344444455555555444444432 23578888764 567888899999999999998776665 6677777
Q ss_pred HHHHHHHhhcCCeEEEEEc
Q 013695 315 FSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 315 ~~~~~~~~~~g~~v~i~~a 333 (438)
+.|- .+++++..|
T Consensus 279 ~nf~------eiD~fV~~a 291 (332)
T TIGR00322 279 LMFD------QIDVFVQVA 291 (332)
T ss_pred hCCC------CcCEEEEec
Confidence 6553 377777554
No 378
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.88 E-value=1.9e+02 Score=28.58 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=48.8
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+...... ..+| ++. ..+.+.+.++.+.+...|.++..-.+- -.+++.+.++
T Consensus 9 ~vlITGAs~GIG~aia~~la~~----------G~~V-vl~--~R~~~~l~~~~~~~~~~g~~~~~~~~D-v~d~~~v~~~ 74 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARR----------GARL-VLA--ARDEEALQAVAEECRALGAEVLVVPTD-VTDADQVKAL 74 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHH
Confidence 4677777755555555544431 2345 333 245677777888888888664322222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013695 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++.++ .+++++|-.||.
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 655443 357888888874
No 379
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=29.84 E-value=3.1e+02 Score=23.08 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCc-EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~-~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++ ++.|.. .....++..|...|++ +... -|++++..++.+.+. +..+....-. .+...+. ..
T Consensus 12 ~~~v-lviGaG---g~ar~v~~~L~~~g~~~i~i~----nRt~~ra~~l~~~~~--~~~~~~~~~~---~~~~~~~--~~ 76 (135)
T PF01488_consen 12 GKRV-LVIGAG---GAARAVAAALAALGAKEITIV----NRTPERAEALAEEFG--GVNIEAIPLE---DLEEALQ--EA 76 (135)
T ss_dssp TSEE-EEESSS---HHHHHHHHHHHHTTSSEEEEE----ESSHHHHHHHHHHHT--GCSEEEEEGG---GHCHHHH--TE
T ss_pred CCEE-EEECCH---HHHHHHHHHHHHcCCCEEEEE----ECCHHHHHHHHHHcC--ccccceeeHH---HHHHHHh--hC
Confidence 3556 666664 6788888999999998 4444 599999888887763 2333333221 3333332 35
Q ss_pred CCEEEecCC
Q 013695 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVI~~p~~ 357 (438)
.-||++++.
T Consensus 77 DivI~aT~~ 85 (135)
T PF01488_consen 77 DIVINATPS 85 (135)
T ss_dssp SEEEE-SST
T ss_pred CeEEEecCC
Confidence 677877764
No 380
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=29.79 E-value=3.1e+02 Score=22.72 Aligned_cols=53 Identities=13% Similarity=0.343 Sum_probs=36.7
Q ss_pred CeEE-EEEecCCC-HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh
Q 013695 271 PRIG-IIMGSDSD-LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 271 ~~v~-iv~gs~sD-~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~ 323 (438)
++.+ |..|.+.+ ..+..-..+.+.++|+.++....+..-+.+++.+.++++.+
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4444 44443322 55777778999999999999988888899999998887744
No 381
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=29.66 E-value=2.2e+02 Score=30.98 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEE---ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCC--------chhhhhcCC
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAH--------LPGMVAART 347 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~---s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~--------l~~~i~~~~ 347 (438)
+-+|...+..+.+..++.|......++ |..-+++...++++++++.|++.+. .+.+.+. |...+....
T Consensus 119 ~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 119 AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLC-IKDMAGLLKPYAAYELVSRIKKRV 197 (593)
T ss_pred eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEE-ECCCCCCcCHHHHHHHHHHHHHhc
Confidence 567788888889888989987655544 3434678888888888888887443 3433322 222233222
Q ss_pred CCCEEEecCC--CCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013695 348 PLPVIGVPVR--ASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 348 ~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
++|.. .+...|+.-.-+..++..|+=..-..|+
T Consensus 198 -----~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~ 232 (593)
T PRK14040 198 -----DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAIS 232 (593)
T ss_pred -----CCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccc
Confidence 33443 2344466644566677888777644444
No 382
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=29.66 E-value=2.5e+02 Score=24.38 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC----CCchhhhhcCCCCCE
Q 013695 276 IMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA----AHLPGMVAARTPLPV 351 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~----~~l~~~i~~~~~~pV 351 (438)
+.|+.+-.+....+.+.-.++|++++.+=+...+ .+.+++.++.+.+ ..+|...|.- =+|-|.|++- ..||
T Consensus 21 iYG~~Tl~di~~~~~~~a~~~g~~v~~~QSN~Eg---~Lid~Ihea~~~~-~~IvINpga~THTSvAlrDAi~av-~iP~ 95 (146)
T COG0757 21 IYGSTTLEDIEADLEEEAAKLGVEVEFRQSNHEG---ELIDWIHEARGKA-GDIVINPGAYTHTSVALRDAIAAV-SIPV 95 (146)
T ss_pred ccCcccHHHHHHHHHHHHHHcCceEEEEecCchH---HHHHHHHHhhccC-CeEEEcCccchhhHHHHHHHHHhc-CCCE
Confidence 3666666666666667777899999888665555 6788898887765 3255555543 3577888775 5899
Q ss_pred EEecCC
Q 013695 352 IGVPVR 357 (438)
Q Consensus 352 I~~p~~ 357 (438)
|=|=.+
T Consensus 96 vEVHlS 101 (146)
T COG0757 96 VEVHLS 101 (146)
T ss_pred EEEEec
Confidence 998876
No 383
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=29.64 E-value=3.9e+02 Score=23.52 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEE----EEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHE----VRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~----~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.-+++||.+.-.+ -.-.+.+.+.|+++|...+ .+|-++-=.|--..+.+ +...++.+|+.
T Consensus 12 ~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La---~~~~yDAvv~l 78 (152)
T COG0054 12 GLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLA---RTGKYDAVVAL 78 (152)
T ss_pred CceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHH---hcCCcceEEEE
Confidence 3478888865433 1234455678888998875 55556666674444444 44457877764
No 384
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=29.61 E-value=4.6e+02 Score=24.26 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
......+.+.++++|+.+... .....+++-.+.++++...+++.+|+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgii~~~ 63 (273)
T cd01541 15 PSIIRGIESVLSEKGYSLLLA--STNNDPERERKCLENMLSQGIDGLIIEP 63 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 455566667778888776543 3356677677777777778888777654
No 385
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=29.61 E-value=4.1e+02 Score=25.28 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 297 SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 297 G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+=.-.+-+.|.-|....+.+.++.+++.|++|+...
T Consensus 174 ~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT 209 (284)
T PRK11302 174 SDGDVVVLISHTGRTKSLVELAQLARENGATVIAIT 209 (284)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEC
Confidence 333345567778888889999999999999876665
No 386
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=29.49 E-value=4.1e+02 Score=25.19 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
...++++..+.+| ......+...++++|+.+... ....++++..++++.+..++++.+|...
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~--~~~~d~~~~~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINP 90 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEe--cCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3467666644333 333444456667788776542 3356677777777777667777666554
No 387
>PRK12497 hypothetical protein; Reviewed
Probab=29.39 E-value=1.6e+02 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-+++|.+.++..|| + ....||++..+++.++|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T PRK12497 11 AGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSD 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEeCCEEEEEEEEeccCC
Confidence 345667777776655 3 45679988877778999999999763
No 388
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.39 E-value=3.3e+02 Score=25.28 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 288 DAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 288 ~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.+.+.+.+. |+.+.. .....+++.-.++++++-.++++.+|+.
T Consensus 20 ~i~~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgiii~ 63 (270)
T cd06308 20 EIQREASNYPDVELII--ADAADDNSKQVADIENFIRQGVDLLIIS 63 (270)
T ss_pred HHHHHHHhcCCcEEEE--EcCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 333444443 554432 2234455555555555555556655444
No 389
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.30 E-value=5e+02 Score=26.65 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=56.5
Q ss_pred EEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCh--------
Q 013695 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTP-------- 311 (438)
Q Consensus 240 i~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~-------- 311 (438)
+..|+|..+++.+.....+.-..+|. ..-| +-..--+..+...+.++++.+++.|+++++-+....-..
T Consensus 2 ~~~G~~~~~v~~~y~~ltG~~~~pP~--walG-~~~~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d 78 (441)
T PF01055_consen 2 FFSGPTPKEVLRQYTELTGRPPLPPR--WALG-FWQSRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWD 78 (441)
T ss_dssp EEEESSHHHHHHHHHHHHSSS----G--GGGS-EEEEESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-
T ss_pred EEeCcCHHHHHHHHHHHHCCCCCCch--hhhc-eEeecCcCCCHHHHHHHHHHHHHcCCCccceeccccccccccccccc
Confidence 46799999999999988886543310 0113 223333455689999999999999999998876532210
Q ss_pred ----hHHHHHHHHHhhcCCeEEEEEc
Q 013695 312 ----DLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 312 ----~~~~~~~~~~~~~g~~v~i~~a 333 (438)
....++++.+++.|+++..-+.
T Consensus 79 ~~~FPd~~~~~~~l~~~G~~~~~~~~ 104 (441)
T PF01055_consen 79 PERFPDPKQMIDELHDQGIKVVLWVH 104 (441)
T ss_dssp TTTTTTHHHHHHHHHHTT-EEEEEEE
T ss_pred cccccchHHHHHhHhhCCcEEEEEee
Confidence 1345666666888999666543
No 390
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.25 E-value=1e+02 Score=30.30 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=52.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCch-hhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP-GMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~-~~i~~~~~~ 349 (438)
.+| ++.|.. .-+-.+++..|...|+...+||...|..+..+.++.++ .+++|++.|...-+. +++....
T Consensus 158 K~v-vViGrS--~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~-----ADIvIsAvGkp~~i~~~~vk~ga-- 227 (293)
T PRK14185 158 KKC-VVLGRS--NIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLE-----ADIIIAALGQPEFVKADMVKEGA-- 227 (293)
T ss_pred CEE-EEECCC--ccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCCC--
Confidence 345 556543 46788899999988876667777778877777877743 689999998775443 3444433
Q ss_pred CEEEecC
Q 013695 350 PVIGVPV 356 (438)
Q Consensus 350 pVI~~p~ 356 (438)
-||.|=.
T Consensus 228 vVIDvGi 234 (293)
T PRK14185 228 VVIDVGT 234 (293)
T ss_pred EEEEecC
Confidence 4777654
No 391
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.21 E-value=87 Score=30.85 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEE
Q 013695 283 LPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~ 303 (438)
.+..+++++.|+++|++.-.-
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~ 97 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVV 97 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 355677777777777775444
No 392
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=28.99 E-value=54 Score=22.37 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=18.2
Q ss_pred EEEecCCHHHHHHHHHHHhh
Q 013695 239 ITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~ 258 (438)
++..|+|.+||+..++.++.
T Consensus 24 ~~t~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALE 43 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHH
Confidence 67999999999999999876
No 393
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.90 E-value=2e+02 Score=28.31 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=47.0
Q ss_pred CeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--C
Q 013695 271 PRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--R 346 (438)
Q Consensus 271 ~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~ 346 (438)
.+++++.-.. .....+.++.+.|.+.|+.+.......+..+ +..+. ......+++++++ ||.+.+-.++.. .
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~-GGDGT~l~~~~~~~~ 79 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVL-GGDGTVLAAARHLAP 79 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEE-CCcHHHHHHHHHhcc
Confidence 4566664333 2335677888888899998766532222111 11111 1112245555544 788777777665 3
Q ss_pred CCCCEEEecC
Q 013695 347 TPLPVIGVPV 356 (438)
Q Consensus 347 ~~~pVI~~p~ 356 (438)
...||+++..
T Consensus 80 ~~~pv~gin~ 89 (305)
T PRK02645 80 HDIPILSVNV 89 (305)
T ss_pred CCCCEEEEec
Confidence 5778888887
No 394
>PLN02530 histidine-tRNA ligase
Probab=28.84 E-value=1.9e+02 Score=30.59 Aligned_cols=58 Identities=7% Similarity=-0.082 Sum_probs=41.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|+..++.....+.+++..|.+.|+.++....+ + ++.+-++.+.+.|++.++.+.
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~---~l~k~ik~A~k~g~~~iviiG 459 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--K---KLKWVFKHAERIGAKRLVLVG 459 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--C---CHHHHHHHHHHCCCCEEEEEc
Confidence 356666656667788999999999999999877322 2 245555666788998555543
No 395
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=28.81 E-value=2.3e+02 Score=29.87 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=62.0
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEEEE---ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCC--------chhhhh
Q 013695 276 IMGSDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAH--------LPGMVA 344 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~G~~~~~~v~---s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~--------l~~~i~ 344 (438)
+..+-||...+....+..++.|..+...++ +.-=+++...++.+++.+.|++. |..+.+.+. |...+.
T Consensus 114 if~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~-I~i~Dt~G~l~P~~v~~Lv~~lk 192 (467)
T PRK14041 114 IFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDS-ICIKDMAGLLTPKRAYELVKALK 192 (467)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCccCCcCHHHHHHHHHHHH
Confidence 333567888888888888889988775553 22224577788888888888874 444433322 222333
Q ss_pred cCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013695 345 ARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 345 ~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
.... +|.. .+...|+.-.-+..++..|+=+.-..++
T Consensus 193 ~~~~-----vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 193 KKFG-----VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred HhcC-----CceEEEecCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 3322 3443 2344466544566677888777744444
No 396
>PRK07063 short chain dehydrogenase; Provisional
Probab=28.69 E-value=2.9e+02 Score=25.65 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHH--cCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 282 DLPVMKDAAKILTM--FSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~L~~--~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+...+.++.+.. .+.++....+- -.+++.+.++++...+ ..++++|-.||.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 40 DAALAERAAAAIARDVAGARVLAVPAD-VTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEEcc-CCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 44556666666655 34333222221 1234445555543322 247777777764
No 397
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=28.39 E-value=1.5e+02 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEe
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIVS 306 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s 306 (438)
+.+.-+.+..+.+.|.++|++++..-..
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 4567899999999999999998665443
No 398
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.36 E-value=4.6e+02 Score=23.94 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
......+.+.+.++|+.+... ....+++.-.++++.+...+++.+|...
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 15 SLVLKGIEDVCRAHGYQVLVC--NSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred HHHHHHHHHHHHHcCCEEEEE--cCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 445556667777888776432 3344566666777777777788655544
No 399
>PRK06940 short chain dehydrogenase; Provisional
Probab=28.20 E-value=2.3e+02 Score=26.88 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh-cCCeEEEEEcCCC
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~-~g~~v~i~~ag~~ 336 (438)
+.+...++.+.+...|.++..-.+. -..++.+.++++..+. .+++++|-.||..
T Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 33 NEENLEAAAKTLREAGFDVSTQEVD-VSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEee-cCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 4455666666676666554322222 2356666666655432 3578888888753
No 400
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=27.96 E-value=4.5e+02 Score=23.67 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--CCCCCEEEecC
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVIGVPV 356 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVI~~p~ 356 (438)
.....+.+.++++|+.+... ..+.+++...+.++++...+++.+|+.......+. .+.. ....|||.+-.
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~~ 87 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLA--NSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEecc
Confidence 34444455666777665433 34556666677777666667777766553333332 2222 34567776643
No 401
>PRK13761 hypothetical protein; Provisional
Probab=27.94 E-value=2.9e+02 Score=26.07 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--------CCCCCEEEecC
Q 013695 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--------RTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--------~~~~pVI~~p~ 356 (438)
...++.+.-+..|-++++.. .|||.++..++.+.+++.|+..+.... -...+|++-.. --..=|+=||.
T Consensus 82 ~p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~~-~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 158 (248)
T PRK13761 82 VPEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGTD-EDARIPGLDHERAKVSEDGIYSADVVLVPL 158 (248)
T ss_pred ChHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCCC-CcCcCCCCCCccceECcccceeccEEEecC
Confidence 34566677777888888774 599999999999999999998544332 14455554322 23345778887
Q ss_pred C
Q 013695 357 R 357 (438)
Q Consensus 357 ~ 357 (438)
.
T Consensus 159 E 159 (248)
T PRK13761 159 E 159 (248)
T ss_pred C
Confidence 4
No 402
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=27.85 E-value=68 Score=32.08 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.8
Q ss_pred EEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 129 IFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 129 ~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
++.+||..+++|+++|+|.|.|..
T Consensus 70 ~~g~Dl~r~~dG~w~VleDn~~~P 93 (330)
T PF04174_consen 70 FYGADLVRDPDGRWRVLEDNTRAP 93 (330)
T ss_dssp EEEEEEEE-SSS-EEEEEEE-SS-
T ss_pred EEEEeeeECCCCCEEEEEecCCCC
Confidence 778899999999999999999987
No 403
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=27.85 E-value=5.8e+02 Score=24.91 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=7.1
Q ss_pred CChHHHHHHHHHH
Q 013695 401 GDADLRARMQQYM 413 (438)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (438)
.|+..|+++...-
T Consensus 344 ~~~~~~~~~~~~a 356 (372)
T cd04949 344 NDPKLLQKFSEAA 356 (372)
T ss_pred cCHHHHHHHHHHH
Confidence 4666666554443
No 404
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.84 E-value=3.1e+02 Score=26.67 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 013695 387 ATNAGLLAVRMLGFGDADLRARMQQYMEDM 416 (438)
Q Consensus 387 ~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~ 416 (438)
..++|+.|+.|++--.|-=++++.+|..+.
T Consensus 192 ~~g~AiRaAliFggv~pGn~~ei~dY~~nR 221 (287)
T cd01917 192 AANYALRAGLMFGGIEPGKREEIRDYQRRR 221 (287)
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHhh
Confidence 679999999999998888899999998765
No 405
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.83 E-value=4.8e+02 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+.++++|+.+... ....++++-.+.++++...+++.+|+.
T Consensus 23 ~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~~~vdgiii~ 62 (288)
T cd01538 23 AALKELGAEVIVQ--NANGDPAKQISQIENMIAKGVDVLVIA 62 (288)
T ss_pred HHHHHcCCEEEEE--CCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3444455443322 223344444455555444555544443
No 406
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.79 E-value=1.1e+02 Score=30.08 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=44.4
Q ss_pred CeEEEEEe--cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHH-HHhhcCCeEEEEEcCCCCCchhhhhc--
Q 013695 271 PRIGIIMG--SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS-SAHERGIEIIIAGAGGAAHLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~g--s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~-~~~~~g~~v~i~~ag~~~~l~~~i~~-- 345 (438)
.+|+|+.- .....+.++++.+.|.+.|+++........-.+..-..+.. .....+++++|+ .|+.+.+-.+...
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~-~GGDGt~l~~~~~~~ 83 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV-VGGDGSLLGAARALA 83 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE-EeCcHHHHHHHHHhc
Confidence 45767743 23334556677777888998876642111000000000000 111234555544 4677766666543
Q ss_pred CCCCCEEEecCC
Q 013695 346 RTPLPVIGVPVR 357 (438)
Q Consensus 346 ~~~~pVI~~p~~ 357 (438)
....||+++..+
T Consensus 84 ~~~~Pvlgin~G 95 (295)
T PRK01231 84 RHNVPVLGINRG 95 (295)
T ss_pred CCCCCEEEEeCC
Confidence 357789988875
No 407
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.78 E-value=1.2e+02 Score=28.70 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-ceeEEEEEEE
Q 013695 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv------~~~eel~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (438)
.+++..+++|.+-.+|.+ ||+|+.++ .+-++...+.+.+. ..++.+..|-.... ..-+-++..+
T Consensus 123 ~vr~~L~~lgL~sf~KTS----G~kGlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDylq 198 (228)
T cd04865 123 LVREVLDELGLRGYPKTS----GARGLHIYVPIAPRYTFEEVRRFAELLAREVERRLPDLATTERWKKERGGRVYLDYLQ 198 (228)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 455666789999999984 58998875 45566555444332 33444555555542 1345566666
Q ss_pred ecCCeEEEEe
Q 013695 76 GRDKSILCYP 85 (438)
Q Consensus 76 ~~~G~~~~~~ 85 (438)
+..|+....|
T Consensus 199 N~~g~T~vap 208 (228)
T cd04865 199 NARGKTLAAP 208 (228)
T ss_pred CCCCCeEEec
Confidence 6666654443
No 408
>PRK14684 hypothetical protein; Provisional
Probab=27.72 E-value=2.3e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.|.+.++.-|| + +...||++..+++.+.|+||-.|.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (120)
T PRK14684 11 NAEKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFS 60 (120)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCCCCeEEEEEEeCCEEEEEEEeEcCCC
Confidence 345666777776655 2 45679988877778999999999763
No 409
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.30 E-value=1.8e+02 Score=24.81 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=34.7
Q ss_pred cCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC
Q 013695 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG 52 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~ 52 (438)
.++.++...+.++.+|+.+|-+.. |..+--.++++.+..+.+..
T Consensus 9 vsPs~l~~~~~~l~~~v~iKETCf-----G~~i~G~~e~V~~~v~~iR~ 52 (132)
T TIGR03272 9 VSPKELVQKLYELELPVTIKETCF-----GAIITGPEEEVMKVAERIRE 52 (132)
T ss_pred cCHHHHHHHHHhcCCCceeeeeee-----eeeeeCCHHHHHHHHHHHHh
Confidence 578999999999999999999753 34555677778887777653
No 410
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.28 E-value=2.2e+02 Score=27.37 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=44.0
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcE-EEEEEecCCChhHHHHHHHH
Q 013695 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSYASS 320 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~-~~~v~s~h~~~~~~~~~~~~ 320 (438)
.+.+.+++.+++.++....... --.-.+.+-..+.++.+.+.+.++.+.+.|..- ..--..-.-+|..+.++++.
T Consensus 103 ~~~~~~e~~~~~~~~i~~a~~~----G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~ 178 (262)
T cd07948 103 HGKSITEIIESAVEVIEFVKSK----GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRT 178 (262)
T ss_pred hCCCHHHHHHHHHHHHHHHHHC----CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHH
Confidence 3567777777777666654310 000123233345567777788888888887762 11112236677777777765
Q ss_pred Hh
Q 013695 321 AH 322 (438)
Q Consensus 321 ~~ 322 (438)
++
T Consensus 179 ~~ 180 (262)
T cd07948 179 LR 180 (262)
T ss_pred HH
Confidence 54
No 411
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.16 E-value=3e+02 Score=23.14 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=15.1
Q ss_pred EEEEecCCHHHHHHHHHHHhh
Q 013695 238 HITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
++++.|.+...|..-+....+
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e 37 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKE 37 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 577888888877776665544
No 412
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.12 E-value=4.9e+02 Score=23.84 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEE
Q 013695 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 243 G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
|.++..++..++.+...-+ .+.+..+++.+.||. .+...+...++.|+.+|+.++.-..
T Consensus 84 ~a~~~~~lqiaql~lkhR~----nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~f 144 (243)
T COG5148 84 GADIMRCLQIAQLILKHRD----NKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFF 144 (243)
T ss_pred cchHHHHHHHHHHHHhccc----CCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEeh
Confidence 3455688888888877543 222334555666662 3458888899999999999887643
No 413
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=27.06 E-value=4.4e+02 Score=25.59 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHH-HcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013695 280 DSDLPVMKDAAKILT-MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~-~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
.++...-..+++.+. +.|++.-...+.-.++...+.+++..+...|++=+.+..|-.
T Consensus 41 ~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~ 98 (281)
T TIGR00677 41 GTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDP 98 (281)
T ss_pred CcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 456777777787887 679998777777788889999999999999999666666533
No 414
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.03 E-value=2.8e+02 Score=26.06 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhhc-CCeEEEEEcCC
Q 013695 282 DLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ag~ 335 (438)
+...+.++.+.+... +.++....+- -.+++.+.+++++.++. +++++|..+|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 41 NEENLKKAREKIKSESNVDVSYIVAD-LTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CHHHHHHHHHHHHhhcCCceEEEEec-CCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 445555555555432 3332221111 23455556665544332 36777777764
No 415
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=26.98 E-value=4.5e+02 Score=26.92 Aligned_cols=58 Identities=14% Similarity=-0.002 Sum_probs=40.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|+..++.....+.+++..|...|+.++.... .+ .+.+-++.+...|++..+++.
T Consensus 275 ~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~--sr---SLgKQiK~AdK~GaPfvIIIG 332 (387)
T PRK14938 275 IQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDL--DD---SLGNKIRRAGTEWIPFVIIIG 332 (387)
T ss_pred ceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECC--CC---CHHHHHHHHHHcCCCEEEEEC
Confidence 35666666666678899999999999999877631 23 344555556788999655554
No 416
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=26.96 E-value=96 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=46.9
Q ss_pred EEEEec--CCCHHHHHHHHHHHHHcCCcEEEEEEec------CCChhHHHHHH-HHHhhcCCeEEEEEcCCCC--Cchh-
Q 013695 274 GIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSA------HRTPDLMFSYA-SSAHERGIEIIIAGAGGAA--HLPG- 341 (438)
Q Consensus 274 ~iv~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~------h~~~~~~~~~~-~~~~~~g~~v~i~~ag~~~--~l~~- 341 (438)
+|++-| ..+.+.++...+.|+.+||++...-... .+++++-++-+ +-+++..++.+++.-||.. .|.+
T Consensus 2 ~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~rlL~~ 81 (284)
T PF02016_consen 2 GIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGANRLLPY 81 (284)
T ss_dssp EEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGGGGGG
T ss_pred EEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHHHHHhc
Confidence 455544 4577899999999999999976552111 13555545444 4457777888998888753 3333
Q ss_pred ----hhhcCCCCCEEEe
Q 013695 342 ----MVAARTPLPVIGV 354 (438)
Q Consensus 342 ----~i~~~~~~pVI~~ 354 (438)
.|+.+ .+++||-
T Consensus 82 ld~~~i~~~-pK~~iGy 97 (284)
T PF02016_consen 82 LDYDAIRKN-PKIFIGY 97 (284)
T ss_dssp CHHHHHHHS-G-EEEE-
T ss_pred ccccccccC-CCEEEEe
Confidence 44444 6677764
No 417
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=26.94 E-value=3.3e+02 Score=26.57 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCeEEEEEecCCC--HHHHHHHHHHHHHcCCcEEEEEEecCCCh-hHHHHH-HHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013695 270 LPRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRIVSAHRTP-DLMFSY-ASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD--~~~~~~~~~~L~~~G~~~~~~v~s~h~~~-~~~~~~-~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
..+|+|+.-..++ .+.+..+++.|++.|+.+......++... .....+ .+.. .++++++|++ |+.+.+-..+..
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~-GGDGt~l~~~~~ 82 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVL-GGDGTMLGIGRQ 82 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEE-CCcHHHHHHHHH
Confidence 3467777533322 33466777778888988665421111000 000000 0111 2245665554 677777777664
Q ss_pred --CCCCCEEEecCC
Q 013695 346 --RTPLPVIGVPVR 357 (438)
Q Consensus 346 --~~~~pVI~~p~~ 357 (438)
....||+|+-.+
T Consensus 83 ~~~~~~pilGIn~G 96 (291)
T PRK02155 83 LAPYGVPLIGINHG 96 (291)
T ss_pred hcCCCCCEEEEcCC
Confidence 357799998875
No 418
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=26.92 E-value=2.8e+02 Score=27.29 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=57.3
Q ss_pred eEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEEe------cCCChhHHHHHHHHH---hhcCCeEEEEEcCCC--CC
Q 013695 272 RIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPDLMFSYASSA---HERGIEIIIAGAGGA--AH 338 (438)
Q Consensus 272 ~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~~~~~~~~~~---~~~g~~v~i~~ag~~--~~ 338 (438)
+|+|++-|. .+.+.+..+.+.|+++||++...-.. .-++++.-++-+.++ .+. ++++++.-||. ..
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~~r 81 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGASR 81 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCHhH
Confidence 577887663 26788888899999999986433211 123455445545443 555 89999888875 34
Q ss_pred chhh-----hhc---CCCCCEEEecCCCCCCCChhhHHHhhcCCCC
Q 013695 339 LPGM-----VAA---RTPLPVIGVPVRASALDGLDSLLSIVQMPRG 376 (438)
Q Consensus 339 l~~~-----i~~---~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~g 376 (438)
|.+. |+. ...+++||- +...+|+.-+.--.|
T Consensus 82 lLp~Ld~~~i~~~~k~~PK~~iGy-------SDiTaL~~al~~~~g 120 (305)
T PRK11253 82 LLAGIDWQGLAARQQDDPLLIVGH-------SDFTAIQLALLAQAN 120 (305)
T ss_pred hhhhCCHHHHhhhhccCCCEEEEE-------cHHHHHHHHHHHhcC
Confidence 4443 332 124466664 244556655554555
No 419
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.90 E-value=3.8e+02 Score=24.36 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=42.1
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.-...-+.+... ....| ++++. +.....+....+...|-.+....+. -..++.+.++
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~----------~G~~V-i~~~r--~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 74 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAK----------EGVNV-GLLAR--TEENLKAVAEEVEAYGVKVVIATAD-VSDYEEVTAA 74 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHH----------CCCEE-EEEeC--CHHHHHHHHHHHHHhCCeEEEEECC-CCCHHHHHHH
Confidence 466677665444444444332 12245 34433 2344455555666555444333222 2345666666
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013695 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++...+ .+++++|..+|.
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 75 IEQLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHHHcCCccEEEEcCcc
Confidence 654432 267888877764
No 420
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.78 E-value=3.3e+02 Score=24.18 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=42.2
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
|+-+-.|..+.+.-+.++.. ..++++++.-. +....+..+.+. +|+++.... -.+++++...+
T Consensus 56 VV~I~~s~~Dil~al~~a~~----------~~~~Iavv~~~-~~~~~~~~~~~l---l~~~i~~~~---~~~~~e~~~~i 118 (176)
T PF06506_consen 56 VVEIPISGFDILRALAKAKK----------YGPKIAVVGYP-NIIPGLESIEEL---LGVDIKIYP---YDSEEEIEAAI 118 (176)
T ss_dssp EEEE---HHHHHHHHHHCCC----------CTSEEEEEEES-S-SCCHHHHHHH---HT-EEEEEE---ESSHHHHHHHH
T ss_pred EEEECCCHhHHHHHHHHHHh----------cCCcEEEEecc-cccHHHHHHHHH---hCCceEEEE---ECCHHHHHHHH
Confidence 55555555555544443331 24678777643 333334444443 477655443 24688999999
Q ss_pred HHHhhcCCeEEEEE
Q 013695 319 SSAHERGIEIIIAG 332 (438)
Q Consensus 319 ~~~~~~g~~v~i~~ 332 (438)
+++...|++|+|..
T Consensus 119 ~~~~~~G~~viVGg 132 (176)
T PF06506_consen 119 KQAKAEGVDVIVGG 132 (176)
T ss_dssp HHHHHTT--EEEES
T ss_pred HHHHHcCCcEEECC
Confidence 99999999999854
No 421
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.70 E-value=2.6e+02 Score=20.47 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=27.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
+|.+.+ .+.-+.+..+.+.|+++|++++..-.. ..++...++.
T Consensus 2 ~v~ly~--~~~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~ 44 (73)
T cd03027 2 RVTIYS--RLGCEDCTAVRLFLREKGLPYVEINID--IFPERKAELE 44 (73)
T ss_pred EEEEEe--cCCChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 443444 345688999999999999998766433 3344333443
No 422
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=26.70 E-value=1.1e+02 Score=32.22 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh-------cCCCCCEEEec
Q 013695 303 RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-------ARTPLPVIGVP 355 (438)
Q Consensus 303 ~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-------~~~~~pVI~~p 355 (438)
++++-.|.+....+.++.+++.|++.++++ |+...+-+... .....+||++|
T Consensus 154 TiLGTSR~~~~~~~iv~~L~~~~I~~L~vI-GGdgT~~~A~~L~ee~~~~g~~I~VIGIP 212 (459)
T PTZ00286 154 TILGSSRGGFDPKVMVDTLIRHGINILFTL-GGDGTHRGALAIYKELRRRKLNISVVGIP 212 (459)
T ss_pred ceeccCCChhhHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHHHHHHHhCCCceEEEec
No 423
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.64 E-value=1.9e+02 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcE--EEEEEecCCChhHHHHHHHHH
Q 013695 280 DSDLPVMKDAAKILTMFSVPH--EVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~--~~~v~s~h~~~~~~~~~~~~~ 321 (438)
..|.+.+.++++.+.+.|... -+.-.+ .-+|..+.++++.+
T Consensus 141 r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G-~~~P~~v~~lv~~l 183 (378)
T PRK11858 141 RTDLDFLIEFAKAAEEAGADRVRFCDTVG-ILDPFTMYELVKEL 183 (378)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHHHH
Confidence 445555555555555555442 111111 34455555555443
No 424
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.41 E-value=5.2e+02 Score=23.86 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=44.2
Q ss_pred EEecCCHH-HHHHHHHHHhhhccCccccCCCCCeEEEEEecC---CCHHHHHHHHHHHHHcC-CcEEEEEEecCCChhHH
Q 013695 240 TIVGSSMG-LVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD---SDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLM 314 (438)
Q Consensus 240 i~~G~~~~-ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~---sD~~~~~~~~~~L~~~G-~~~~~~v~s~h~~~~~~ 314 (438)
...+.|-. -+...++.+.+..+ ...+++++.+.. ..........+.+.+.| +++...+. ...+.+..
T Consensus 101 ~~v~~d~~~~g~~~~~~l~~~~~-------g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-~~~~~~~~ 172 (272)
T cd06300 101 YNVNEDQAEFGKQGAEWLVKELG-------GKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEVY-GDWDQAVA 172 (272)
T ss_pred eEecCCHHHHHHHHHHHHHHHcC-------CCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeecC-CCCCHHHH
Confidence 33454444 44444444554432 235787887642 22455566677777887 77643322 23344444
Q ss_pred HHHHHHHhhc--CCeEEEEEcCC
Q 013695 315 FSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 315 ~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
.+.+..+-+. .++++++....
T Consensus 173 ~~~~~~~l~~~~~~~~i~~~~d~ 195 (272)
T cd06300 173 QKAVADFLASNPDVDGIWTQGGD 195 (272)
T ss_pred HHHHHHHHHhCCCcCEEEecCCC
Confidence 4444443222 34555555443
No 425
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=26.39 E-value=1.8e+02 Score=29.35 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCcc
Q 013695 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNAT 388 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~~ 388 (438)
+++.+.+.+++++|- .|.|++ ..-|.|||.+ ...++.+|+.|+.+-|. || |--|.++.++
T Consensus 183 ~~m~~~I~~a~~~gD-----------SlGG~v----e~~~~gvP~GLG~p~f~kLda~La~a~ms--IpAvKgvE~G~Gf 245 (351)
T TIGR00033 183 KEMVAEIDKAKKDGD-----------SIGGVV----ECVARNVPVGLGEPLFDKLDARLAHAMMS--IPAVKGVEIGDGF 245 (351)
T ss_pred HHHHHHHHHHHhcCC-----------CCCcEE----EEEEECCCCCCCCCccccchHHHHHHhcC--cCceeEEEECcch
Confidence 346667766666543 233332 2335567764 45688999989887773 34 4478887776
Q ss_pred hHH
Q 013695 389 NAG 391 (438)
Q Consensus 389 ~Aa 391 (438)
.+|
T Consensus 246 ~~a 248 (351)
T TIGR00033 246 ELA 248 (351)
T ss_pred hhc
Confidence 655
No 426
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=26.36 E-value=6.4e+02 Score=24.92 Aligned_cols=55 Identities=36% Similarity=0.388 Sum_probs=38.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013695 300 HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 300 ~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
--+-++|-.|+..++.+.++.++++|++++.+..++ .|... +..-..|+|.+|.+
T Consensus 80 dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~--~L~~~-a~~~~~~~i~ip~~ 134 (337)
T PRK08674 80 TLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGG--KLKEM-AKEHGLPVIIVPGG 134 (337)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCc--hHHHH-HHhcCCeEEEeCCC
Confidence 345567788889999998888888899866555432 36664 33337789988864
No 427
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.14 E-value=1.5e+02 Score=28.89 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=9.1
Q ss_pred cCCeEEEEEcCCC
Q 013695 324 RGIEIIIAGAGGA 336 (438)
Q Consensus 324 ~g~~v~i~~ag~~ 336 (438)
.+++|.|-.||++
T Consensus 90 g~vDvLVNNAG~~ 102 (282)
T KOG1205|consen 90 GRVDVLVNNAGIS 102 (282)
T ss_pred CCCCEEEecCccc
Confidence 3577777777765
No 428
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=26.11 E-value=45 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.7
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 013695 392 LLAVRMLGFGDADLRARMQQY 412 (438)
Q Consensus 392 ~~a~~il~~~~~~~~~~~~~~ 412 (438)
..|++.|+++-..|+.||+.|
T Consensus 22 ~~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 22 SKAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 357899999999999998764
No 429
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=26.05 E-value=2.4e+02 Score=24.37 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCc
Q 013695 299 PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVP 378 (438)
Q Consensus 299 ~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip 378 (438)
++..|+++.-....++.+-++++.+. ++|+||.+.+-+.|-.. +..+-.||=.+--......=.+ +++-+.-|.
T Consensus 20 ~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~l-ae~~gi~~~rv~a~a~~e~K~~-ii~eLkk~~--- 93 (152)
T COG4087 20 KVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQL-AEFVGIPVERVFAGADPEMKAK-IIRELKKRY--- 93 (152)
T ss_pred eEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHH-HHHcCCceeeeecccCHHHHHH-HHHHhcCCC---
Q ss_pred eEEEEeCCcch
Q 013695 379 VATVAINNATN 389 (438)
Q Consensus 379 ~~tv~i~~~~~ 389 (438)
--++.++|+.|
T Consensus 94 ~k~vmVGnGaN 104 (152)
T COG4087 94 EKVVMVGNGAN 104 (152)
T ss_pred cEEEEecCCcc
No 430
>PRK05876 short chain dehydrogenase; Provisional
Probab=25.95 E-value=3.3e+02 Score=25.80 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013695 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
.+.+.+.++.+.+...|.++....+- -..++.+.+++++..+. .++++|-.||.
T Consensus 38 r~~~~l~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 38 VDKPGLRQAVNHLRAEGFDVHGVMCD-VRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44566666777777666553322111 23455566666544221 36778877764
No 431
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.88 E-value=1.6e+02 Score=25.08 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=41.3
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcE--EEEEEecCCChhHHHHHHHHHhhc-CCeEEEEE
Q 013695 276 IMGSDSDLPVMKDAAKILTMFSVPH--EVRIVSAHRTPDLMFSYASSAHER-GIEIIIAG 332 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~G~~~--~~~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ 332 (438)
+||...+.+.+..+.+.+..-.+.+ ...+.-..|+...+..+++.+.+. |+.++.+-
T Consensus 47 ~SG~~~~Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 47 FSGTTFDRPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CcCCcCCCHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEec
Confidence 3666778999999998887765552 233344778888888888888776 89877654
No 432
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.71 E-value=4.8e+02 Score=24.05 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=28.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
++..++.|.....+..+.|...++. .-++..+. +..+.+.++.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~i~~l~~~~vd--giii~~~~-~~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 34 QFEDAKNDVATQLSQVENFIAQGVD--AIIVVPVD-TAATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCC--EEEEecCc-hhhhHHHHHHHHHCCCeEEEe
Confidence 3334455666666767666666643 33333222 222334444456667776654
No 433
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.55 E-value=79 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=22.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR 309 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~ 309 (438)
++.|+++| ...+++.|.+.|+++.+.+.+..+
T Consensus 4 LvlGGT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 4 LLMGGTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred EEEechHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 66666654 777788888888887777666554
No 434
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=25.54 E-value=1.9e+02 Score=28.05 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEe------cCCChhHHHHHH-HHHhhcCCeEEEEEcCCC
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVS------AHRTPDLMFSYA-SSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~~~~~~~-~~~~~~g~~v~i~~ag~~ 336 (438)
..+..+.+.|+.+|+++...-.- ...++++-++-+ +-+.+..++.+++..||.
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 88899999999999997544211 123444444444 445777899999999876
No 435
>PLN02884 6-phosphofructokinase
Probab=25.47 E-value=1e+02 Score=31.83 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=0.0
Q ss_pred EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh-------cCCCCCEEEec
Q 013695 303 RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA-------ARTPLPVIGVP 355 (438)
Q Consensus 303 ~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~-------~~~~~pVI~~p 355 (438)
++++--|......+.++.+++.+++.++++ |+...+.+.-. .....|||++|
T Consensus 121 t~LGtsR~~~~~~~i~~~L~~~~Id~LivI-GGdgS~~~a~~L~~~~~~~g~~i~vIGIP 179 (411)
T PLN02884 121 SLLGVSRGGAKTSDIVDSIEARGINMLFVL-GGNGTHAGANAIHNECRKRKMKVSVVGVP 179 (411)
T ss_pred ceeccCCCCccHHHHHHHHHHcCCCEEEEE-CCchHHHHHHHHHHHHHHcCCCceEEecc
No 436
>PRK03094 hypothetical protein; Provisional
Probab=25.43 E-value=1.8e+02 Score=22.67 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCcEE-EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013695 288 DAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 288 ~~~~~L~~~G~~~~-~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
.+.+.|++.||.+. .. +-+ ...++++++ +.|...++-|+=...|..|||+-
T Consensus 12 ~i~~~L~~~GYeVv~l~--~~~-------------~~~~~Da~V-itG~d~n~mgi~d~~t~~pVI~A 63 (80)
T PRK03094 12 DVQQALKQKGYEVVQLR--SEQ-------------DAQGCDCCV-VTGQDSNVMGIADTSTKGSVITA 63 (80)
T ss_pred HHHHHHHHCCCEEEecC--ccc-------------ccCCcCEEE-EeCCCcceecccccccCCcEEEc
Confidence 46678888888853 22 101 013566554 35677777776555667788774
No 437
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.42 E-value=4.8e+02 Score=26.95 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=46.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCCCCchhhhhcCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
++|+|.. |-..+..+++.|.++|..+..- .+.+..+..-.+....+++ .+.++.|...+-.-.+-..+.....
T Consensus 304 krv~i~g----~~~~~~~la~~L~elGm~v~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~p 378 (435)
T cd01974 304 KKFALYG----DPDFLIGLTSFLLELGMEPVHV-LTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPV 378 (435)
T ss_pred CEEEEEc----ChHHHHHHHHHHHHCCCEEEEE-EeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCC
Confidence 4664443 3456888999999999998443 3335544432332222232 2334444444434456777777778
Q ss_pred CCEEEec
Q 013695 349 LPVIGVP 355 (438)
Q Consensus 349 ~pVI~~p 355 (438)
..+||..
T Consensus 379 DliiG~s 385 (435)
T cd01974 379 DLLIGNT 385 (435)
T ss_pred CEEEECc
Confidence 8888864
No 438
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.30 E-value=5.3e+02 Score=23.63 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC
Q 013695 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 288 ~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
.+.+.+++.|+.+... .....+++..++++.+..++++.+|+...
T Consensus 20 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 20 RLEALARERGYQLLIA--CSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHCCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3445566777765443 33556777777787777788887776654
No 439
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.23 E-value=4.1e+02 Score=24.35 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=44.1
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+.+|.+-.--..-+.+.... ..+| ++++. +.....+....+...+.++....+. -.+++.+.+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~----------g~~v-~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~ 71 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKE----------GAKV-VIADL--NDEAAAAAAEALQKAGGKAIGVAMD-VTDEEAINAG 71 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCeE-EEEeC--CHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 4677776655555444444431 1245 33322 3444555556666666554443333 3356666666
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013695 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
+++.+. .+++++|-.+|.
T Consensus 72 ~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 72 IDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 654433 257788877764
No 440
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.19 E-value=5.5e+02 Score=23.75 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
|........+.|...++. +-++... +++.+.+.++.+.+.|++|+..
T Consensus 45 ~~~~~~~~~~~l~~~~vD--giii~~~-~~~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 45 DTEQQNAQQDLLINRKID--ALVILPF-ESAPLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCC-CchhhHHHHHHHHHCCCeEEEE
Confidence 444444445555555543 2222211 2222333444444556665554
No 441
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=25.18 E-value=3.4e+02 Score=25.18 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHHcC
Q 013695 281 SDLPVMKDAAKILTMFS 297 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G 297 (438)
+|.....++.+.|...+
T Consensus 39 ~~~~~~~~~i~~l~~~~ 55 (273)
T cd06309 39 QKQENQISAIRSFIAQG 55 (273)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444443
No 442
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=25.17 E-value=3.2e+02 Score=25.41 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=23.2
Q ss_pred Cchhhhhc--CCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013695 338 HLPGMVAA--RTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 338 ~l~~~i~~--~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
.|-.++.. -....||++|++ .+...--++|. ..+||..|+.
T Consensus 143 ~l~elie~~~~~palvIg~PVGFv~AaesKe~L~-----~~~iP~itv~ 186 (210)
T COG2082 143 ELLELIEEGGIKPALVIGVPVGFVGAAESKEALR-----ESPIPYITVR 186 (210)
T ss_pred HHHHHHHccCCCCcEEEEcCCcccchHHHHHHHH-----hCCCCeEEEe
Confidence 34556655 456779999996 22221222221 3348888775
No 443
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.91 E-value=4.2e+02 Score=22.34 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+.+|.+-.=.+.-+...+.. .+.++++.+...+.+...+....|...|.+++.--+. -.+++.+.++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~----------g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 70 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR----------GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD-LSDPESIRAL 70 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE-TTSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc----------CceEEEEeeeccccccccccccccccccccccccccc-cccccccccc
Confidence 4677777765555555555542 2344355544346788888888888888665544333 4567777777
Q ss_pred HHHHh--hcCCeEEEEEcCCC
Q 013695 318 ASSAH--ERGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~--~~g~~v~i~~ag~~ 336 (438)
+++.. ...++++|.++|..
T Consensus 71 ~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 71 IEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHHHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccccccc
Confidence 77665 33466888888754
No 444
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=24.86 E-value=1.4e+02 Score=28.58 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-ceeEEEEEEE
Q 013695 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv------~~~eel~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (438)
.+++..+++|.+-.+|.+ ||+|+.++ .+-++...+.+.+. ..++.+..|..... ..-+-++..+
T Consensus 138 ~~r~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~Pd~~t~~~~k~~R~gkvfiDylq 213 (245)
T TIGR02778 138 LIRELLDELGLESFVKTS----GGKGLHVYVPLRPTLSWDEVKDFAKALAQALAQQMPDRFTAEMSKKNRVGKIFVDYLR 213 (245)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 345566788999999984 58998875 45566655444332 33444555555442 1245666666
Q ss_pred ecCCeEEEEe
Q 013695 76 GRDKSILCYP 85 (438)
Q Consensus 76 ~~~G~~~~~~ 85 (438)
+..|+....|
T Consensus 214 N~~g~T~vap 223 (245)
T TIGR02778 214 NARGKTTVAP 223 (245)
T ss_pred CCCCCeEEec
Confidence 6666654443
No 445
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=24.84 E-value=2.4e+02 Score=27.18 Aligned_cols=65 Identities=6% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHcCCcEEEEEE---ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013695 292 ILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 292 ~L~~~G~~~~~~v~---s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
.++.+|++....+. ...-+|..+.++++.+++.+++++++-...+......|+..+..+|+.+++
T Consensus 184 ~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 184 LARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 44678988654321 234568889999999999999999998888888888899888888887754
No 446
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.83 E-value=5.5e+02 Score=23.57 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhcCCCCCEEEec
Q 013695 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 285 ~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVI~~p 355 (438)
....+.+.+.++|+.+... ....++++..+.++.+..++++.+|..... .......+......|||-+-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~ 86 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILC--NTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMD 86 (269)
T ss_pred HHHHHHHHHHHcCCEEEEE--eCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEe
Confidence 3445556677888776543 346677777788888888888866654422 22111233233456777553
No 447
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=24.78 E-value=2.5e+02 Score=26.54 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=35.5
Q ss_pred CCeEEEE-Eec--CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013695 270 LPRIGII-MGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv-~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
.++|++| +.| .+...........+..+|+.+. ..|. ++...+.+ . .++++.+.-|..-.|...+.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~----~l~~-~~d~~~~l---~--~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT----GIHR-VADPVAAI---E--NAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE----Eecc-chhhHHHH---h--cCCEEEECCccHHHHHHHHH
Confidence 3567666 333 2235557778888999998743 2244 23333333 2 36666665554445544443
No 448
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=24.71 E-value=6.6e+02 Score=25.15 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=63.3
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEE----EEEEecC---------
Q 013695 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHE----VRIVSAH--------- 308 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~----~~v~s~h--------- 308 (438)
.+.|.+++.+.+.+.+.+-- ...+=+-|+. ....++.+.|.+.|+++. ++--|.|
T Consensus 108 Y~~s~e~av~nA~rl~~eaG---------a~aVKlEGg~---~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqG 175 (332)
T PLN02424 108 YESSTDQAVESAVRMLKEGG---------MDAVKLEGGS---PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQG 175 (332)
T ss_pred CCCCHHHHHHHHHHHHHHhC---------CcEEEECCCc---HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccC
Confidence 55789999999888765311 0111333332 334577888889999987 3222222
Q ss_pred CChhHHHHHH---HHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEec
Q 013695 309 RTPDLMFSYA---SSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 309 ~~~~~~~~~~---~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p 355 (438)
|+.+...+.+ +.+++-|+..++.- +....|...|......|+||+=
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE-~Vp~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLE-CVPAPVAAAITSALQIPTIGIG 224 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEc-CCcHHHHHHHHHhCCCCEEeec
Confidence 3344334444 44677788755432 4556699999999999999973
No 449
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=24.68 E-value=1.4e+02 Score=28.16 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-ceeEEEEEEE
Q 013695 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv------~~~eel~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (438)
.+++..+++|.+-.+|.+ ||+|+.++ .+-++...+.+.+. ..++.+..|-.... ..-+-++..+
T Consensus 122 ~~r~~L~~lgL~~~~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~lA~~l~~~~P~~~t~~~~k~~R~gkvfiDylq 197 (227)
T cd04862 122 LVRELLDELGLESFVKTS----GGKGLHVVVPLAPRAGWDEVKAFAKALAQHLARTNPDRFVATMGKAKRVGKIFIDYLR 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhHHhhHHhCCCcEEEECcc
Confidence 355566788999999984 58998875 45566655444332 23444444444432 1245666666
Q ss_pred ecCCeEEEEe
Q 013695 76 GRDKSILCYP 85 (438)
Q Consensus 76 ~~~G~~~~~~ 85 (438)
+..|+....|
T Consensus 198 N~~g~T~vap 207 (227)
T cd04862 198 NGRGATAVAP 207 (227)
T ss_pred CCCCCeEEec
Confidence 6666654443
No 450
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.27 E-value=3.4e+02 Score=21.02 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=26.4
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEEe
Q 013695 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVS 306 (438)
Q Consensus 271 ~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s 306 (438)
..|+++|-|. ..-+.+..+.+.|.++|++|+..-..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~ 46 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL 46 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC
Confidence 4565776553 35678888899999999998766544
No 451
>PRK08589 short chain dehydrogenase; Validated
Probab=24.26 E-value=3.4e+02 Score=25.58 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=42.4
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013695 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+..=-+.-+...++. ..+| ++.+. + +...+....+.+.|.++..-.+- -..++.+.++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~----------G~~v-i~~~r--~-~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~ 72 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQE----------GAYV-LAVDI--A-EAVSETVDKIKSNGGKAKAYHVD-ISDEQQVKDF 72 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEEeC--c-HHHHHHHHHHHhcCCeEEEEEee-cCCHHHHHHH
Confidence 4666776655444444444331 2345 33333 3 45566666666666443222111 2345556666
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013695 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++...+ ..++++|-.||.
T Consensus 73 ~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 73 ASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHcCCcCEEEECCCC
Confidence 655432 247788888874
No 452
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.16 E-value=2.9e+02 Score=25.71 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHcCCc
Q 013695 282 DLPVMKDAAKILTMFSVP 299 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~ 299 (438)
|.....+..+.|...++.
T Consensus 42 ~~~~~~~~i~~l~~~~vd 59 (271)
T cd06312 42 DVADMARLIEAAIAAKPD 59 (271)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 444444444555544443
No 453
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.98 E-value=3.2e+02 Score=23.57 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
..+| .+.|. .....++++..|...|..+..- |+....+.++++ ..+++|++.|..+
T Consensus 28 gk~v-~VvGr--s~~vG~pla~lL~~~gatV~~~----~~~t~~l~~~v~-----~ADIVvsAtg~~~ 83 (140)
T cd05212 28 GKKV-LVVGR--SGIVGAPLQCLLQRDGATVYSC----DWKTIQLQSKVH-----DADVVVVGSPKPE 83 (140)
T ss_pred CCEE-EEECC--CchHHHHHHHHHHHCCCEEEEe----CCCCcCHHHHHh-----hCCEEEEecCCCC
Confidence 3456 44433 2578889999999888654444 866666666663 4689999988763
No 454
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=23.98 E-value=3.2e+02 Score=25.26 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+...++...+++.|..+....+. -.+++.+.+.+++... ..++++|-.+|.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 45 AATLEAAVAALRAAGGAAEALAFD-IADEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 344556666666666554433222 2334555555554433 235677777764
No 455
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=23.86 E-value=1.4e+02 Score=25.60 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCCCEE-EecCCCCCCCChhh
Q 013695 289 AAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLPVI-GVPVRASALDGLDS 366 (438)
Q Consensus 289 ~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~pVI-~~p~~~~~~~g~~~ 366 (438)
+++.|++.|++....+-+ +. ...+++.+.+.+++++.+.-... ...++-.+-.+-.|.+ .+-.+.+..+.+.+
T Consensus 3 i~~~L~~~Gv~~vfg~pg-~~----~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~ 77 (155)
T cd07035 3 LVEALKAEGVDHVFGVPG-GA----ILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTG 77 (155)
T ss_pred HHHHHHHcCCCEEEECCC-Cc----hHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHH
Confidence 567888888887777655 33 34444444455677666654221 2222322223333433 33323444445554
Q ss_pred HHHhhcCCCCCceEEEE
Q 013695 367 LLSIVQMPRGVPVATVA 383 (438)
Q Consensus 367 l~s~~~~~~gip~~tv~ 383 (438)
|... .+. ++|+..+.
T Consensus 78 l~~A-~~~-~~Pll~i~ 92 (155)
T cd07035 78 LANA-YLD-SIPLLVIT 92 (155)
T ss_pred HHHH-Hhh-CCCEEEEe
Confidence 3332 233 78887654
No 456
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=23.81 E-value=3.6e+02 Score=24.08 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=42.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHc-CCcEEEEEEec---CCChhHHHHHHHHHhhcCCeEEEEEc----CCCCCchhhh
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMF-SVPHEVRIVSA---HRTPDLMFSYASSAHERGIEIIIAGA----GGAAHLPGMV 343 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~-G~~~~~~v~s~---h~~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~l~~~i 343 (438)
++++|++-..--..+..++..|..- ...+++++-++ +++|+...++.+... ..+++++.= .-...+...+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia--~ADii~~smlF~ed~v~~l~~~L 79 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIA--RADIIFGSMLFIEDHVRPLLPAL 79 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHH--hCCEEEeehhhhHHHHHHHHHHH
Confidence 3556666555555555566666554 44455555443 377866666555444 356666543 1112334444
Q ss_pred hcC--CCCCEEEecC
Q 013695 344 AAR--TPLPVIGVPV 356 (438)
Q Consensus 344 ~~~--~~~pVI~~p~ 356 (438)
... ...-+|.++.
T Consensus 80 ~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 80 EARRDHCPAMIIFES 94 (164)
T ss_pred HHHHccCCEEEEEcC
Confidence 443 4444555554
No 457
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=23.73 E-value=3.5e+02 Score=26.84 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCch
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP 340 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~ 340 (438)
+.+..+++++.|+++|++.-..+-+ -+ +......+.+.|++|+-+.+-.+|.++
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGG-dg----s~~~a~~L~e~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIGG-DG----SYMGAMRLTEHGFPCVGLPGTIDNDIP 130 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC-ch----HHHHHHHHHHcCCCEEEecccccCCCC
Confidence 3466777888888888886555432 44 222222223334554444444444444
No 458
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=23.66 E-value=4.6e+02 Score=26.55 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=41.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|++.++.+...+.+++..|...|+.++.... .++ +.+-++.+...|++-++.+.
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~--~~~---l~k~~~~a~~~g~~~~i~ig 380 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLG--GRK---LKKQLKYADKLGARFAVILG 380 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCC--CCC---HHHHHHHHHHcCCCEEEEEC
Confidence 46767666667788999999999999999876532 233 34445555778999655554
No 459
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.61 E-value=1.5e+02 Score=27.86 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-ceeEEEEEEE
Q 013695 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv------~~~eel~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (438)
.+++..+++|.+-.+|.+ ||+|+.++ .+-++...+.+.+. ..++.+..|-.... ..-+-++..+
T Consensus 122 ~vr~~L~~lgL~~f~KTS----G~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDy~q 197 (227)
T cd04861 122 LLRELLDELGLESFPKTS----GGKGLHVYVPLAPRYTWDEVRAFAKALARELARRLPDLFTAEMAKAKRGGKIFVDYLQ 197 (227)
T ss_pred HHHHHHHHcCCccceEcc----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECcc
Confidence 455666789999999984 58998875 45566655444332 33444555544442 1345566666
Q ss_pred ecCCeEEEEe
Q 013695 76 GRDKSILCYP 85 (438)
Q Consensus 76 ~~~G~~~~~~ 85 (438)
+..|+....|
T Consensus 198 N~~g~T~vap 207 (227)
T cd04861 198 NARGKTTVAP 207 (227)
T ss_pred CCCCCeEEec
Confidence 6666654443
No 460
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=23.49 E-value=4.5e+02 Score=22.57 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=26.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
+.+|...|.....-+--..+.-..++-+-.+-.-|+|+++.+.++++..+ .+|++.-+|++..-.....++
T Consensus 32 vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sH 102 (138)
T PF13607_consen 32 VSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASH 102 (138)
T ss_dssp EE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC-S-EEEEE--------------
T ss_pred EEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhcc
Confidence 66777666542222222222233334344444567788888888777655 667777777654444444444
No 461
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.41 E-value=1.5e+02 Score=29.02 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=50.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc-hhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL-PGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l-~~~i~~~~~~ 349 (438)
.+| ++.|.. .-+-.+++..|...|....+||...|..+..+.+++++ .+++|++.|...-+ +++|... .
T Consensus 154 k~v-vViGrS--~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~-----ADIvV~AvG~p~~i~~~~ik~G--a 223 (287)
T PRK14181 154 RHV-AIVGRS--NIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKT-----ADIIIAAIGVPLFIKEEMIAEK--A 223 (287)
T ss_pred CEE-EEECCC--ccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCC--C
Confidence 345 556543 46778889999888654456777778766777777743 58999988877433 3344433 3
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
-||.|=.+
T Consensus 224 vVIDvGin 231 (287)
T PRK14181 224 VIVDVGTS 231 (287)
T ss_pred EEEEeccc
Confidence 47777543
No 462
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=23.34 E-value=8.3e+02 Score=25.15 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=55.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHH-HhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS-AHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~-~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++++|+. +-..+..+++.|.++|... ..+.+..+++. ..+.+++ ....+.++.+...+-.-.+...+......
T Consensus 301 krv~v~g----~~~~~~~l~~~L~elG~~~-~~v~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~~~d 374 (429)
T cd03466 301 RKAAIYG----EPDFVVAITRFVLENGMVP-VLIATGSESKK-LKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKID 374 (429)
T ss_pred CEEEEEc----CHHHHHHHHHHHHHCCCEE-EEEEeCCCChH-HHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCC
Confidence 4564433 3467888899999999997 44554444333 2332221 23335566666655455677777777777
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEE
Q 013695 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATV 382 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv 382 (438)
.+||-+.. +.++...|||+..+
T Consensus 375 liiG~s~~-----------~~~a~~~~ip~~~~ 396 (429)
T cd03466 375 VLIGNSYG-----------RRIAEKLGIPLIRI 396 (429)
T ss_pred EEEECchh-----------HHHHHHcCCCEEEe
Confidence 78875431 22333457776644
No 463
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.34 E-value=5.8e+02 Score=23.38 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
......+.+.++++|+.+.. ......++...++++.+...+++.+|+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVL--SESGRRTSPERQWVERLSARRTDGVILVT 63 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEE--ecCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 44445556667777766543 34456666666777777777788666554
No 464
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=23.34 E-value=3.9e+02 Score=27.38 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=66.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013695 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
++.|+- .+...++..|...|- .+.++ |-|+++...++..... ..++...+=+....+|..+|++. ..||||
T Consensus 5 lviGaG---~Vg~~va~~la~~~d-~~V~i--AdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~~--d~VIn~ 75 (389)
T COG1748 5 LVIGAG---GVGSVVAHKLAQNGD-GEVTI--ADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKDF--DLVINA 75 (389)
T ss_pred EEECCc---hhHHHHHHHHHhCCC-ceEEE--EeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhcC--CEEEEe
Confidence 555553 577778888888884 34444 3799999988864321 14666666555666888999887 899999
Q ss_pred cCCCCCCCChhhHHHhhcCCCCCceEEEEeCCc
Q 013695 355 PVRASALDGLDSLLSIVQMPRGVPVATVAINNA 387 (438)
Q Consensus 355 p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~ 387 (438)
-+..- ++. ....++..|+++.++..+..
T Consensus 76 ~p~~~---~~~--i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 76 APPFV---DLT--ILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred CCchh---hHH--HHHHHHHhCCCEEEcccCCc
Confidence 76421 223 45567799999997765543
No 465
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.30 E-value=2.9e+02 Score=25.94 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=17.0
Q ss_pred CCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 308 HRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 308 h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
-.+++.+.++++...+ ..++++|-.+|.
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 67 VTNPKSISNLFDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred CCCHHHHHHHHHHHHHHcCCccEEEEcccc
Confidence 3456667777765433 237777777764
No 466
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.28 E-value=1.4e+02 Score=31.49 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=38.8
Q ss_pred cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhhhc--CCCCCEEEecCC
Q 013695 307 AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 307 ~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~~--~~~~pVI~~p~~ 357 (438)
.+++.+.+.+.+..+.+.|+ +++|++.|+. .++++++|+ .--.|.|.+|+.
T Consensus 216 ~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 216 EVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 57777777777777777787 6888888765 688888877 356788999985
No 467
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=23.26 E-value=4.1e+02 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+...++.+.+...|..+....+. -..++.+.++++...+ ..++++|-.||.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 44 QEKAEAVVAEIKAAGGEALAVKAD-VLDKESLEQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445556666666555443222111 2234445555544322 256777777763
No 468
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=23.16 E-value=1.7e+02 Score=27.72 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEe------CCHHHHHHHHHHhc-----CCCCcEEEeeccCC-ceeEEEEEEE
Q 013695 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVA------KSEEELSSAITALG-----GFDRGLYVEKWAPF-VKELAVIVVR 75 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv------~~~eel~~~~~~~~-----~~~~~~lvEe~I~g-~~E~sv~~~~ 75 (438)
.+++..+++|.+-.+|.+ ||+|+.++ .+-++...+.+.+. ..++.+..+-.... ..-+-++..+
T Consensus 126 ~~r~~L~~lgL~s~~KTS----G~kGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~P~~~t~~~~k~~R~grvfiDylq 201 (231)
T cd04863 126 WLRDRLAALGLASFPKTS----GSKGLHLYVPLDGPVSSDQTKEFAKALARELEREHPDLVVSRMTKSLRAGKVFVDWSQ 201 (231)
T ss_pred HHHHHHHHcCCccceECC----CCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhhhHhhHhhCCCcEEEECcc
Confidence 455666789999999984 58998875 55566665544432 23333443333321 1246677777
Q ss_pred ecCCeEEEEe
Q 013695 76 GRDKSILCYP 85 (438)
Q Consensus 76 ~~~G~~~~~~ 85 (438)
+..|+....|
T Consensus 202 N~~g~T~vap 211 (231)
T cd04863 202 NDAAKTTIAP 211 (231)
T ss_pred CCCCCeEEec
Confidence 6666655444
No 469
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=23.05 E-value=2.2e+02 Score=28.67 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=16.5
Q ss_pred hhcCCeEEEEEcCCCCCchhhhhc-CCCCCEEEec
Q 013695 322 HERGIEIIIAGAGGAAHLPGMVAA-RTPLPVIGVP 355 (438)
Q Consensus 322 ~~~g~~v~i~~ag~~~~l~~~i~~-~~~~pVI~~p 355 (438)
++..-+++++...+...|++.+++ ..-.||+.+=
T Consensus 90 ~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 90 ERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred HHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEE
Confidence 333444444443344455544444 4556666554
No 470
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=23.01 E-value=1.9e+02 Score=23.62 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred CeEEEEEecCCCHHHHH-HHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013695 271 PRIGIIMGSDSDLPVMK-DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~-~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.+|.+++++--.-..+. +.....++.|+++++.-.| -+.... ....++++...---+-.+..+-......
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~----~~~~~~-----~~~~~DviLl~Pqi~~~~~~i~~~~~~~ 74 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP----ETLAGE-----KGQNADVVLLGPQIAYMLPEIQRLLPNK 74 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEee----cchhhc-----cccCCCEEEECHHHHHHHHHHHhhcCCC
Confidence 35667766544444444 7777778999998887322 111111 2235677776432222333331122336
Q ss_pred CEEEecCC
Q 013695 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
||+.++..
T Consensus 75 pV~~I~~~ 82 (106)
T PRK10499 75 PVEVIDSL 82 (106)
T ss_pred CEEEEChH
Confidence 88888864
No 471
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=22.91 E-value=5.9e+02 Score=23.27 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013695 287 KDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 287 ~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..+.+.+.++|+.+... ..+.+++...++++.+...+++.+|+.
T Consensus 19 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~ 62 (268)
T cd06298 19 RGIDDIATMYKYNIILS--NSDNDKEKELKVLNNLLAKQVDGIIFM 62 (268)
T ss_pred HHHHHHHHHcCCeEEEE--eCCCCHHHHHHHHHHHHHhcCCEEEEe
Confidence 34445566677765443 346667766777776666677755554
No 472
>PRK14675 hypothetical protein; Provisional
Probab=22.90 E-value=3e+02 Score=23.25 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 113 ATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 113 i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
-++.|.+.++.-|| + +...||++..+++.+.|+||-.|.+.
T Consensus 14 gE~~A~~~L~~~G~~il~rn~r~~~GEIDlIa~d~~~lvFVEVK~R~~~ 62 (125)
T PRK14675 14 GESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNY 62 (125)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCeEEEEEEeCCEEEEEEEEeccCC
Confidence 45566666666655 2 56679988776778999999999763
No 473
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=22.86 E-value=5.9e+02 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV 302 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~ 302 (438)
..+|.|++|+-.+=-...-+++.|..+|+.+++
T Consensus 45 ~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 45 AGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFL 77 (205)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHhCCCEEEE
Confidence 357889999888888888999999886665444
No 474
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.68 E-value=3.6e+02 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhhcCCeEEEE
Q 013695 312 DLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~ 331 (438)
+.+...++++.+.|++|+..
T Consensus 92 ~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 92 DGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHHHCCCeEEEe
Confidence 33344444444445554443
No 475
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=22.64 E-value=1.2e+02 Score=31.11 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CC
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~ 348 (438)
.+.+++|. ||+.-+.++++-|.++|+.+.+. -+ |++.+ ++.|++|-=+.. -.|.|.|+.|+ |-
T Consensus 4 ~k~AllSV--sDKtgLl~La~gL~~~g~~lvaS----GG----TAk~l---rdaG~~V~dVs~--iT~fPEMLgGRVKTL 68 (588)
T KOG2555|consen 4 TKLALLSV--SDKTGLLDLAKGLVELGVTLVAS----GG----TAKML---RDAGLPVRDVSE--ITHFPEMLGGRVKTL 68 (588)
T ss_pred ceEEEEEe--ecccChHHHHhHHHhcCcEEEec----Cc----hHHHH---HhCCCccchHHh--hcCChHHhCCccccc
Confidence 35667774 57999999999999999998877 88 88888 666888765543 23677777764 45
Q ss_pred CCEE
Q 013695 349 LPVI 352 (438)
Q Consensus 349 ~pVI 352 (438)
.|-|
T Consensus 69 HPaV 72 (588)
T KOG2555|consen 69 HPAV 72 (588)
T ss_pred cccc
Confidence 5544
No 476
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.56 E-value=4.8e+02 Score=22.07 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE 301 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~ 301 (438)
+|.|++| .|.....++.+.|+.+|++..
T Consensus 1 kVFIvhg--~~~~~~~~v~~~L~~~~~ep~ 28 (125)
T PF10137_consen 1 KVFIVHG--RDLAAAEAVERFLEKLGLEPI 28 (125)
T ss_pred CEEEEeC--CCHHHHHHHHHHHHhCCCceE
Confidence 3556665 678888899999998998753
No 477
>PRK00865 glutamate racemase; Provisional
Probab=22.53 E-value=2.1e+02 Score=27.38 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=51.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHH----HHHHhhcCCeEEEEEcCCC-CCchhh
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSY----ASSAHERGIEIIIAGAGGA-AHLPGM 342 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~----~~~~~~~g~~v~i~~ag~~-~~l~~~ 342 (438)
..|+|+=.+-.=+.+++++.+.|-...|-|.+.-.. --|++++..++ ++.+++.|++.++++.-.+ ....+.
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~ 85 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPD 85 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHH
Confidence 346666434455788888888887777666655221 13455554444 3556778899555544222 223466
Q ss_pred hhcCCCCCEEEe
Q 013695 343 VAARTPLPVIGV 354 (438)
Q Consensus 343 i~~~~~~pVI~~ 354 (438)
+......||||+
T Consensus 86 lr~~~~iPvigi 97 (261)
T PRK00865 86 LRERYDIPVVGI 97 (261)
T ss_pred HHHhCCCCEEee
Confidence 777788999994
No 478
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.53 E-value=4.3e+02 Score=22.17 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC----CCchhhhhcCCCCCEE
Q 013695 288 DAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA----AHLPGMVAARTPLPVI 352 (438)
Q Consensus 288 ~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~----~~l~~~i~~~~~~pVI 352 (438)
-++..|+++|+++... .-..-.++.+.+.++++-++ ++++|+..|.+ -+.+.+++......+-
T Consensus 23 ~l~~~l~~~G~~v~~~-~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~t~~ai~~~g~~~~~ 89 (133)
T cd00758 23 ALEALLEDLGCEVIYA-GVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDVTPEALAELGEREAH 89 (133)
T ss_pred HHHHHHHHCCCEEEEe-eecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcchHHHHHHhcCEEec
Confidence 3455578889875432 22355677777777666443 77777765432 4666666654433333
No 479
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.50 E-value=4e+02 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=5.3
Q ss_pred HHHHhhcCCeEEE
Q 013695 318 ASSAHERGIEIII 330 (438)
Q Consensus 318 ~~~~~~~g~~v~i 330 (438)
++.+.+.|++|+.
T Consensus 74 i~~~~~~~iPvV~ 86 (294)
T cd06316 74 YKKVAEAGIKLVF 86 (294)
T ss_pred HHHHHHcCCcEEE
Confidence 3333344444443
No 480
>PRK07062 short chain dehydrogenase; Provisional
Probab=22.45 E-value=4.2e+02 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 309 RTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 309 ~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+++.+.+++++..+ ..++++|-.||.
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 69 LDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 345555555544322 246677777764
No 481
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.37 E-value=2.9e+02 Score=22.61 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC
Q 013695 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG 52 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~ 52 (438)
.++.|+...+.++++|+.+|-+.. |..+--.++++.+.++.+..
T Consensus 10 v~Ps~l~~~~~~~~~~v~iKETCF-----G~~i~Ge~e~V~~~i~~iR~ 53 (104)
T PF09875_consen 10 VSPSDLAMKLYELSLPVTIKETCF-----GAMIEGEEEEVDKVIEEIRK 53 (104)
T ss_pred cCHHHHHHHHHhcCCCceeeecce-----eeEEECCHHHHHHHHHHHHh
Confidence 478899999999999999999753 34555566777777777653
No 482
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=22.30 E-value=2.5e+02 Score=25.19 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc-CCCCCchhhhhc--------CCCCCEEEec
Q 013695 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVAA--------RTPLPVIGVP 355 (438)
Q Consensus 285 ~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~~--------~~~~pVI~~p 355 (438)
...++.+.-+..|-++++.. .|||.++..++.+.+++.|...+.... ..+..+|++-.. --..=|+=||
T Consensus 19 ~p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVP 96 (178)
T PF02006_consen 19 VPEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVP 96 (178)
T ss_pred ChHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEec
Confidence 34566666677888888774 599999999999999999998554432 122345555332 2234577788
Q ss_pred CC
Q 013695 356 VR 357 (438)
Q Consensus 356 ~~ 357 (438)
..
T Consensus 97 LE 98 (178)
T PF02006_consen 97 LE 98 (178)
T ss_pred cC
Confidence 73
No 483
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=22.27 E-value=5.7e+02 Score=27.16 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=54.7
Q ss_pred CCeEEEEEec---CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC
Q 013695 270 LPRIGIIMGS---DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 270 ~~~v~iv~gs---~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
.+.++|+.|. ..-+..+..+.+.+++.|-+++.-+++ .=+|++++.|. .++++|.++=-...+-+. ..
T Consensus 281 A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vg-kinpaKLaNF~------eID~fV~vaCPr~sidd~--~~ 351 (496)
T TIGR00272 281 AGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVG-KPNPAKLANFE------DIDIFVLLGCSQSGIIDS--NE 351 (496)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhCCC------CCCEEEEccCCCcccccH--hh
Confidence 3678888774 567889999999999999998887776 77888887764 378888777333344432 34
Q ss_pred CCCCEEE
Q 013695 347 TPLPVIG 353 (438)
Q Consensus 347 ~~~pVI~ 353 (438)
-.+|||.
T Consensus 352 F~KPVlT 358 (496)
T TIGR00272 352 FYRPIVT 358 (496)
T ss_pred CCCceec
Confidence 5678885
No 484
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.23 E-value=6.1e+02 Score=23.24 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.....+...+.++|+.+. +...+.+++...++++.+...+++.+|+..
T Consensus 16 ~~~~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (263)
T cd06280 16 AVSRAVEDAAYRAGLRVI--LCNTDEDPEKEAMYLELMEEERVTGVIFAP 63 (263)
T ss_pred HHHHHHHHHHHHCCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 344555577778887764 334566777777777777777888666543
No 485
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=22.22 E-value=2.3e+02 Score=22.52 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCC
Q 013695 114 TDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 114 ~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
++.|...++..|| + +...||++..+++.+.|+||-.|.+
T Consensus 3 E~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~~~~lvfVEVK~R~~ 49 (93)
T PF02021_consen 3 EELAARYLERKGYRILERNWRCRRGEIDIIARDGDTLVFVEVKTRSS 49 (93)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEETTEEEEEEEEETTEEEEEEEEE---
T ss_pred HHHHHHHHHHCCCEEeeeeecCCCCcEeEEEEEcccEEEEEEEEeec
Confidence 4566666676665 2 5677998887777899999999975
No 486
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=22.18 E-value=3.1e+02 Score=29.10 Aligned_cols=104 Identities=19% Similarity=0.123 Sum_probs=52.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE---EecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc--------hhhhhcCC
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRI---VSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL--------PGMVAART 347 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v---~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l--------~~~i~~~~ 347 (438)
+-+|...++.+.+..++.|......+ .|..-+++...++.+++.+.|++. |..+.+.+.+ ...+....
T Consensus 119 ~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~-I~IkDtaGll~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 119 ALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADS-ICIKDMAALLKPQPAYDIVKGIKEAC 197 (499)
T ss_pred cCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCE-EEeCCCccCCCHHHHHHHHHHHHHhC
Confidence 45677777777777777776553332 133336777777777777777663 3344333222 12222222
Q ss_pred C-CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013695 348 P-LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 348 ~-~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
. ..-|++= .....|+.-.-+..++..|+=..-+.|+
T Consensus 198 ~~~ipI~~H--~Hnt~GlA~An~laAieAGad~vDtai~ 234 (499)
T PRK12330 198 GEDTRINLH--CHSTTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred CCCCeEEEE--eCCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 1 1112221 2233355533455566777766644444
No 487
>PRK08643 acetoin reductase; Validated
Probab=22.10 E-value=4.2e+02 Score=24.39 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013695 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+...++...+...|-++....+- -..++.+.+.+++..+ .+++++|-.||.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 35 NEETAQAAADKLSKDGGKAIAVKAD-VSDRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3455556666666655443222111 3445556666655432 357788887764
No 488
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.05 E-value=3.5e+02 Score=26.12 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=46.0
Q ss_pred eEEEEEecCCC-----HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe-EEEEEcC---CCCCchhh
Q 013695 272 RIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE-IIIAGAG---GAAHLPGM 342 (438)
Q Consensus 272 ~v~iv~gs~sD-----~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~-v~i~~ag---~~~~l~~~ 342 (438)
+|+|++|+.|- +.-...+++.|+++|++++.--. .+. ....+.+. ..++ |+..+-| ...+++++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~--~~~---~~~~~~~~--~~~D~v~~~~~g~~ge~~~~~~~ 74 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDV--DED---FLKKVDQL--KSFDVVFNVLHGTFGEDGTLQAI 74 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEcc--Cch---HHHHhhhc--cCCCEEEEeCCCCCCCccHHHHH
Confidence 58899998664 45677888899999998655421 221 22222211 2356 4444433 35677777
Q ss_pred hhcCCCCCEEEecC
Q 013695 343 VAARTPLPVIGVPV 356 (438)
Q Consensus 343 i~~~~~~pVI~~p~ 356 (438)
+.. .-.|++|.+.
T Consensus 75 le~-~gip~~G~~~ 87 (299)
T PRK14571 75 LDF-LGIRYTGSDA 87 (299)
T ss_pred HHH-cCCCccCCCH
Confidence 654 4678888754
No 489
>PLN02837 threonine-tRNA ligase
Probab=22.00 E-value=2.6e+02 Score=30.48 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=41.7
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..++...+.+.++++.|...|+.++. . .. ++ +.+-++.++..|++..+++.
T Consensus 518 qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~-~~-~s---lgkkir~A~~~gip~~IiIG 573 (614)
T PLN02837 518 QARVLPVTDNELEYCKEVVAKLKAKGIRAEV-C-HG-ER---LPKLIRNAETQKIPLMAVVG 573 (614)
T ss_pred cEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-e-CC-CC---HHHHHHHHHHcCCCEEEEEc
Confidence 5667777777889999999999999999887 3 22 33 55556666888999666554
No 490
>PRK03298 hypothetical protein; Provisional
Probab=21.96 E-value=6.7e+02 Score=23.57 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEe----cCe
Q 013695 20 LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHK----ENI 95 (438)
Q Consensus 20 vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~----~g~ 95 (438)
+|+||. | ..++++...- ++-+...++.+-++..++. ....+..++..-++.......+.++. -++
T Consensus 27 iiiK~D--G-----svlVH~d~~~---~kPlNW~pp~~~~~~~~~~-g~~~v~svr~kp~E~L~I~~~~V~~~~~~~l~~ 95 (224)
T PRK03298 27 LLVKAD--G-----SVSVHADDRA---YKPLNWMSPPCTLTEEPPG-GVEEVWRVENKAGEQLRITIEEILHDSSHDLGV 95 (224)
T ss_pred EEEccC--C-----eEEEecCCCC---CCCcccCCCCeEEEEEecC-CcEEEEEEecCCCCEEEEEEEEEEEEEEEeccC
Confidence 789993 2 2455554221 1112233455777777764 34555555544445433322221111 111
Q ss_pred eeEEEcCCCCCHHHHHHHHHHHHHHHHHc-----Cce-eEEEEEEEE-eCCCcEEEEEEcCCCC
Q 013695 96 CHIVKAPAAVPWKISELATDVAHKAVSSL-----EGA-GIFAVELFW-TNNGQILLNEVAPRPH 152 (438)
Q Consensus 96 ~~~~~~P~~l~~~~~~~i~~~a~~i~~~l-----g~~-G~~~ve~~~-~~~g~~~viEiNpR~~ 152 (438)
... +.-.....++++.|.+--..+-+.+ .+. ....||++- +++|.+.++|+-.| +
T Consensus 96 ~~~-L~~~G~Ea~Lq~~lae~p~~i~~G~~lv~rE~~t~~G~IDil~rD~~G~~V~vEvKRr-~ 157 (224)
T PRK03298 96 DPG-LVKDGVEAHLQELLAEHIETLGEGYTLVRREYPTAIGPVDLLCRDADGGTVAVEIKRR-G 157 (224)
T ss_pred CCC-cEEeeeHHHHHHHHHhCHHHhcCCCEEEEEEecCCCCceeEEEEcCCCCEEEEEEEec-C
Confidence 000 0011123345554544443333333 121 233567654 45799999999999 5
No 491
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.85 E-value=7.7e+02 Score=24.69 Aligned_cols=83 Identities=7% Similarity=-0.005 Sum_probs=48.0
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE-EEecCCChhHHH
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR-IVSAHRTPDLMF 315 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~-v~s~h~~~~~~~ 315 (438)
...+...++...|... +...+.+ .+++|+.-++.+...+....+.+.+.|+++... +.... .+...
T Consensus 102 ~f~i~~~p~~~~a~~~---~i~~~~w--------k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~--~~d~~ 168 (371)
T cd06388 102 QFVLQLRPSLRGALLS---LLDHYEW--------NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFN--DASYR 168 (371)
T ss_pred ceEEEeChhhhhHHHH---HHHhcCc--------eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCC--cHHHH
Confidence 3456666665444433 2233322 467788766666777888888888888776543 22221 23555
Q ss_pred HHHHHHhhcCCeEEEEE
Q 013695 316 SYASSAHERGIEIIIAG 332 (438)
Q Consensus 316 ~~~~~~~~~g~~v~i~~ 332 (438)
..|+++++.+.+++|+.
T Consensus 169 ~~L~~ik~~~~~~iil~ 185 (371)
T cd06388 169 RLLEDLDRRQEKKFVID 185 (371)
T ss_pred HHHHHhcccccEEEEEE
Confidence 56666666666655543
No 492
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=21.82 E-value=1e+03 Score=25.65 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--hhHH
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLM 314 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~--~~~~ 314 (438)
-+|.....|.. +.++..++.... .+.+.|+. .-+.-+.-+|+.|.++||+++.- |++ -+.-
T Consensus 494 Q~v~m~~ed~k--~kkL~eil~~~~--------~ppiIIFv---N~kk~~d~lAk~LeK~g~~~~tl----Hg~k~qeQR 556 (673)
T KOG0333|consen 494 QKVEMVSEDEK--RKKLIEILESNF--------DPPIIIFV---NTKKGADALAKILEKAGYKVTTL----HGGKSQEQR 556 (673)
T ss_pred eEEEEecchHH--HHHHHHHHHhCC--------CCCEEEEE---echhhHHHHHHHHhhccceEEEe----eCCccHHHH
Confidence 34555555554 777777776532 12342333 34788999999999999886554 664 3333
Q ss_pred HHHHHHHhhcCCeEEEE--EcCCCCCchhhhhcCCCCCEEEecC
Q 013695 315 FSYASSAHERGIEIIIA--GAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 315 ~~~~~~~~~~g~~v~i~--~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
+..|..+++.-.+|+|| +||+-=.+|+| -.|||--.
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnV------SlVinydm 594 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNV------SLVINYDM 594 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCcc------ceeeecch
Confidence 44566666655667777 45555456655 35888655
No 493
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.75 E-value=4.8e+02 Score=21.82 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcC-Cc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFS-VP 299 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G-~~ 299 (438)
.++ ++.|+......+.+.+-.|.+.+ ++
T Consensus 14 ~~i-~~~G~G~s~~~a~e~~~kl~e~~~i~ 42 (153)
T cd05009 14 KSF-YVLGRGPNYGTALEGALKLKETSYIH 42 (153)
T ss_pred CcE-EEEcCCCCHHHHHHHHHHHHHHHhhc
Confidence 445 78888889999999998888886 45
No 494
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.70 E-value=2.7e+02 Score=27.02 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=42.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHh
Q 013695 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 322 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~ 322 (438)
.|+| +=. |.|...+..|.+..+++|++..-..++=...|+.+.+++++++
T Consensus 104 PGrV-LHi--DGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~ 153 (283)
T TIGR02855 104 PGRV-LHI--DGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR 153 (283)
T ss_pred CCcE-Eee--cCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC
Confidence 3666 333 7899999999999999999998888887889999999997664
No 495
>PRK14685 hypothetical protein; Provisional
Probab=21.63 E-value=3e+02 Score=24.93 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCc-------e-eEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013695 112 LATDVAHKAVSSLEG-------A-GIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 112 ~i~~~a~~i~~~lg~-------~-G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.-++.+...++.-|| + ....||++..+++.+.|+||-.|-++
T Consensus 47 ~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~dg~~LVFVEVKtR~~~ 96 (177)
T PRK14685 47 AYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHA 96 (177)
T ss_pred HHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEecCCEEEEEEEeECCCC
Confidence 445666666666555 3 56779988877778999999999763
No 496
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.62 E-value=5.3e+02 Score=29.03 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCC------------
Q 013695 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR------------ 309 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~------------ 309 (438)
.|.+|.+.+... ......+.+.....+..+++|++ |-.|-+-|-.+.+.....+...-.+|.+.|.
T Consensus 362 r~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~IaIlt-sGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~ 439 (762)
T cd00764 362 RGKSFDKNWNLY-KLLAIELPQPLPEKTNLNIAIVN-VGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVE 439 (762)
T ss_pred cchhHHHHHHHH-HhccccCCccCCcccccEEEEEe-cCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCccc
Q ss_pred -----------------------ChhHHHHHHHHHhhcCCeEEEEEcC-CCCCchhhhhc------CCCCCEEEecCC-C
Q 013695 310 -----------------------TPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA------RTPLPVIGVPVR-A 358 (438)
Q Consensus 310 -----------------------~~~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~------~~~~pVI~~p~~-~ 358 (438)
.++...+..+.+++.+++.++++-| ++-.-..-++. ....|||++|-. .
T Consensus 440 l~~~~v~~~~~~GGt~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTID 519 (762)
T cd00764 440 LGWIDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVS 519 (762)
T ss_pred CCHHHHHHHHhCCcccccccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEeccccc
Q ss_pred CCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHH
Q 013695 359 SALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 398 (438)
Q Consensus 359 ~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il 398 (438)
..+.|-| .|++-|.+.|.++.++.-+
T Consensus 520 NDv~gTd--------------~siGfdTAln~~~~~id~i 545 (762)
T cd00764 520 NNVPGTD--------------FSLGSDTALNALMKYCDRI 545 (762)
T ss_pred CCCCCCc--------------CCCCHHHHHHHHHHHHHHH
No 497
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=21.56 E-value=2.7e+02 Score=27.71 Aligned_cols=140 Identities=13% Similarity=0.257 Sum_probs=76.3
Q ss_pred EEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecC--CCHHHHHHHHHHHHHcCCcE-EEEEEecCCChhH
Q 013695 237 GHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDL 313 (438)
Q Consensus 237 G~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~-~~~v~s~h~~~~~ 313 (438)
|.|+++.+.. .+.++++..-..++. -.+++++..+. .+...+++..+.++..|+++ ++.+.+.-=
T Consensus 134 ~NvTGvsD~~-~v~q~i~lik~~~Pn-------ak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~nd---- 201 (322)
T COG2984 134 GNVTGVSDLL-PVAQQIELIKALLPN-------AKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVND---- 201 (322)
T ss_pred CceeecCCcc-hHHHHHHHHHHhCCC-------CeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccc----
Confidence 4455565544 444444444444432 25777777553 34788899999999999995 455433332
Q ss_pred HHHHHHHHhhcCCeEEEEEcCC--CCCchhhh--hcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC---
Q 013695 314 MFSYASSAHERGIEIIIAGAGG--AAHLPGMV--AARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--- 386 (438)
Q Consensus 314 ~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~i--~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~--- 386 (438)
.....+.+.+ ..+++.+...- ......++ +...-.|||+--++ .+..|- |+++.+|.
T Consensus 202 i~~a~~~l~g-~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~--------------~V~~Ga-~aA~gvdy~~~ 265 (322)
T COG2984 202 IPRAVQALLG-KVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTS--------------SVKEGA-LAALGVDYKDL 265 (322)
T ss_pred cHHHHHHhcC-CCcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCHH--------------HHhcCc-ceeeccCHHHH
Confidence 2222222232 35566655421 01122222 23455677653221 112332 56777773
Q ss_pred cchHHHHHHHHHcCCChH
Q 013695 387 ATNAGLLAVRMLGFGDAD 404 (438)
Q Consensus 387 ~~~Aa~~a~~il~~~~~~ 404 (438)
+..+|..+.+||.-.+|.
T Consensus 266 G~qtg~~v~~ILkG~~p~ 283 (322)
T COG2984 266 GKQTGEMVVKILKGKKPK 283 (322)
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 789999999999865553
No 498
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=21.53 E-value=2.3e+02 Score=30.97 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=43.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013695 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
-.|.|+..++.....+.++++.|...|+.++.. .|. ..+.+-++.+...|++.++++.
T Consensus 500 ~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lD----dr~-~slgkKir~A~~~GiP~iIVIG 557 (613)
T PRK03991 500 TQVRVIPVSERHLDYAEEVADKLEAAGIRVDVD----DRD-ESLGKKIRDAGKEWIPYVVVIG 557 (613)
T ss_pred ceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEE----CCC-CCHHHHHHHHHHcCCCEEEEEC
Confidence 367777777777889999999999999998887 331 2355566667888999666654
No 499
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.48 E-value=3e+02 Score=22.46 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=31.1
Q ss_pred eEEEEEec-CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013695 272 RIGIIMGS-DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 272 ~v~iv~gs-~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+|.+++|+ -|.--.+.++.+.+++.|++++.. |....++.+++ ...++++++.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~----a~~~~e~~~~~---~~~~~DvIll 56 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVD----AITATEGEKAI---AAAEYDLYLV 56 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEE----EecHHHHHHhh---ccCCCCEEEE
Confidence 45555553 333467777788889999998887 33333333333 3334666554
No 500
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.34 E-value=4.1e+02 Score=27.78 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEE---ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC--------CchhhhhcCC
Q 013695 279 SDSDLPVMKDAAKILTMFSVPHEVRIV---SAHRTPDLMFSYASSAHERGIEIIIAGAGGAA--------HLPGMVAART 347 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~---s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~--------~l~~~i~~~~ 347 (438)
+-||...+.++.+..++.|..+.+.++ +..-+++...++.+++.+.|++. |..+.+.+ .|...+....
T Consensus 118 ~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~-I~i~Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 118 ALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS-ICIKDMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred ecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCHHHHHHHHHHHHHhc
Confidence 445666777788888888876554432 22234577777777777777764 33443332 1222232222
Q ss_pred CCCEEEecCC--CCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013695 348 PLPVIGVPVR--ASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 348 ~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
++|.. .....|+.---+..++..|+=..-+.++
T Consensus 197 -----~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 197 -----TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred -----CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 23332 2333455533455566777666644443
Done!