Query 013696
Match_columns 438
No_of_seqs 460 out of 2741
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4648 Uncharacterized conser 100.0 7.2E-31 1.6E-35 246.2 19.3 407 1-414 10-516 (536)
2 PF13877 RPAP3_C: Potential Mo 99.9 9.8E-27 2.1E-31 187.3 9.1 93 312-404 1-94 (94)
3 KOG4626 O-linked N-acetylgluco 99.8 1.6E-18 3.4E-23 173.8 18.4 185 11-206 257-453 (966)
4 KOG4626 O-linked N-acetylgluco 99.8 2.9E-19 6.4E-24 179.0 12.2 185 10-205 188-384 (966)
5 KOG0553 TPR repeat-containing 99.8 1.1E-18 2.4E-23 163.0 13.6 119 81-199 78-197 (304)
6 PRK15359 type III secretion sy 99.7 5.5E-16 1.2E-20 134.9 16.0 129 67-200 12-141 (144)
7 TIGR00990 3a0801s09 mitochondr 99.7 5.8E-16 1.3E-20 166.0 16.1 178 20-205 308-497 (615)
8 KOG1126 DNA-binding cell divis 99.7 1.2E-16 2.6E-21 162.4 9.9 194 9-213 313-561 (638)
9 TIGR00990 3a0801s09 mitochondr 99.7 1.4E-15 3.1E-20 163.0 16.1 182 13-205 338-538 (615)
10 KOG0548 Molecular co-chaperone 99.6 2.9E-15 6.3E-20 149.2 13.5 147 52-198 301-473 (539)
11 KOG1126 DNA-binding cell divis 99.6 1.4E-15 3.1E-20 154.7 9.8 155 46-202 418-584 (638)
12 KOG0550 Molecular chaperone (D 99.6 8.1E-15 1.8E-19 141.7 13.5 142 59-201 214-370 (486)
13 KOG4648 Uncharacterized conser 99.6 2.8E-14 6.1E-19 135.0 15.2 97 53-151 101-199 (536)
14 TIGR02552 LcrH_SycD type III s 99.6 6.8E-14 1.5E-18 119.8 15.9 126 69-196 4-130 (135)
15 PRK10370 formate-dependent nit 99.6 9.2E-14 2E-18 127.4 15.7 125 61-187 52-180 (198)
16 KOG0543 FKBP-type peptidyl-pro 99.5 1.5E-13 3.3E-18 133.7 15.1 118 84-201 208-341 (397)
17 KOG4234 TPR repeat-containing 99.5 1.3E-13 2.7E-18 121.8 13.0 107 83-189 94-206 (271)
18 PRK11189 lipoprotein NlpI; Pro 99.5 2.7E-13 5.8E-18 132.3 16.7 125 61-185 39-166 (296)
19 TIGR02521 type_IV_pilW type IV 99.5 4.4E-13 9.5E-18 123.5 17.0 167 12-189 37-207 (234)
20 KOG1155 Anaphase-promoting com 99.5 2.3E-13 5E-18 133.3 14.9 138 55-194 336-475 (559)
21 PLN03088 SGT1, suppressor of 99.5 3.4E-13 7.5E-18 134.7 16.1 113 87-199 5-118 (356)
22 PRK09782 bacteriophage N4 rece 99.5 2.5E-13 5.4E-18 150.5 15.6 125 61-188 589-714 (987)
23 PRK11189 lipoprotein NlpI; Pro 99.5 5.6E-13 1.2E-17 130.1 16.1 125 52-179 67-193 (296)
24 PRK12370 invasion protein regu 99.5 2.1E-13 4.6E-18 144.2 14.0 130 60-191 316-447 (553)
25 PRK12370 invasion protein regu 99.5 3.5E-13 7.6E-18 142.6 15.5 141 61-203 274-434 (553)
26 TIGR02521 type_IV_pilW type IV 99.5 6.8E-13 1.5E-17 122.2 14.8 133 54-188 36-172 (234)
27 PRK09782 bacteriophage N4 rece 99.5 8E-13 1.7E-17 146.5 17.4 152 56-209 549-711 (987)
28 PRK15174 Vi polysaccharide exp 99.5 5.3E-13 1.1E-17 143.8 14.9 147 60-208 224-385 (656)
29 PRK15174 Vi polysaccharide exp 99.5 9.5E-13 2.1E-17 141.8 16.4 176 17-205 223-404 (656)
30 COG3063 PilF Tfp pilus assembl 99.5 4E-13 8.7E-18 121.5 11.2 130 55-187 41-175 (250)
31 PRK15363 pathogenicity island 99.5 2.2E-12 4.7E-17 111.6 15.1 112 87-198 38-150 (157)
32 PRK15359 type III secretion sy 99.5 5.6E-13 1.2E-17 115.9 11.4 104 60-165 36-140 (144)
33 KOG1155 Anaphase-promoting com 99.5 1E-12 2.2E-17 128.9 14.3 159 12-181 336-496 (559)
34 PRK11447 cellulose synthase su 99.4 3.1E-12 6.6E-17 146.4 16.2 102 54-155 308-423 (1157)
35 COG3063 PilF Tfp pilus assembl 99.4 3.1E-12 6.8E-17 115.7 12.1 157 20-187 49-209 (250)
36 PLN02789 farnesyltranstransfer 99.4 1.1E-11 2.4E-16 121.6 16.8 135 60-196 49-187 (320)
37 TIGR02917 PEP_TPR_lipo putativ 99.4 4.5E-12 9.8E-17 139.7 15.1 143 60-206 715-868 (899)
38 KOG0547 Translocase of outer m 99.4 9E-12 2E-16 123.0 14.5 151 55-207 332-494 (606)
39 PRK11788 tetratricopeptide rep 99.4 8.6E-12 1.9E-16 125.9 14.8 125 60-184 153-282 (389)
40 KOG0548 Molecular co-chaperone 99.4 3.4E-12 7.4E-17 127.5 11.2 109 87-195 5-114 (539)
41 PRK11447 cellulose synthase su 99.3 1E-11 2.2E-16 142.2 15.4 132 56-189 276-423 (1157)
42 KOG0553 TPR repeat-containing 99.3 5.7E-12 1.2E-16 118.3 10.8 119 60-180 93-215 (304)
43 KOG0547 Translocase of outer m 99.3 8.1E-12 1.8E-16 123.3 12.3 153 55-209 366-537 (606)
44 TIGR02917 PEP_TPR_lipo putativ 99.3 2.1E-11 4.5E-16 134.5 16.2 151 55-207 131-293 (899)
45 KOG1173 Anaphase-promoting com 99.3 1.7E-11 3.7E-16 123.0 13.2 165 21-196 361-534 (611)
46 PLN02789 farnesyltranstransfer 99.3 1.7E-11 3.6E-16 120.3 13.0 177 9-196 40-228 (320)
47 KOG1173 Anaphase-promoting com 99.3 2.1E-11 4.6E-16 122.4 13.0 163 45-209 308-523 (611)
48 KOG0551 Hsp90 co-chaperone CNS 99.3 2.8E-11 6.1E-16 114.5 12.9 106 82-187 79-189 (390)
49 PRK11788 tetratricopeptide rep 99.3 5.2E-11 1.1E-15 120.2 15.7 170 12-188 147-319 (389)
50 TIGR03302 OM_YfiO outer membra 99.3 3.4E-11 7.3E-16 113.2 13.3 133 53-185 37-200 (235)
51 PRK15179 Vi polysaccharide bio 99.3 1E-10 2.2E-15 125.4 17.5 131 53-185 90-222 (694)
52 KOG1125 TPR repeat-containing 99.3 3.5E-11 7.5E-16 121.3 12.4 156 48-205 318-528 (579)
53 TIGR03302 OM_YfiO outer membra 99.3 6.2E-11 1.3E-15 111.4 13.3 163 14-182 41-234 (235)
54 PRK02603 photosystem I assembl 99.3 1.6E-10 3.5E-15 103.5 15.3 104 71-174 22-129 (172)
55 CHL00033 ycf3 photosystem I as 99.3 1.7E-10 3.6E-15 103.0 15.0 127 59-185 10-154 (168)
56 PF13429 TPR_15: Tetratricopep 99.2 3.9E-11 8.4E-16 116.0 10.2 139 60-198 122-261 (280)
57 PF13414 TPR_11: TPR repeat; P 99.2 4.2E-11 9E-16 90.2 7.9 66 117-182 3-69 (69)
58 PRK15179 Vi polysaccharide bio 99.2 2.2E-10 4.7E-15 122.8 15.9 132 75-208 79-221 (694)
59 KOG0624 dsRNA-activated protei 99.2 4.8E-11 1E-15 113.3 9.6 149 53-201 227-391 (504)
60 PLN03088 SGT1, suppressor of 99.2 7.8E-11 1.7E-15 117.8 11.5 105 59-165 13-118 (356)
61 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.7E-10 8.1E-15 93.7 13.8 102 87-188 5-113 (119)
62 KOG0550 Molecular chaperone (D 99.2 1E-10 2.2E-15 113.6 11.5 145 60-206 181-352 (486)
63 KOG1125 TPR repeat-containing 99.2 6.1E-11 1.3E-15 119.6 10.3 118 64-183 410-530 (579)
64 cd00189 TPR Tetratricopeptide 99.2 2.8E-10 6.2E-15 88.3 12.0 97 87-183 3-100 (100)
65 KOG4642 Chaperone-dependent E3 99.2 9E-11 2E-15 106.6 9.6 99 83-181 9-108 (284)
66 KOG1129 TPR repeat-containing 99.2 3.8E-11 8.3E-16 113.4 7.3 145 46-192 287-436 (478)
67 PRK10370 formate-dependent nit 99.2 3.6E-10 7.8E-15 103.6 13.1 110 97-206 52-175 (198)
68 KOG1129 TPR repeat-containing 99.2 2.9E-10 6.3E-15 107.5 12.5 164 13-187 297-465 (478)
69 PF13414 TPR_11: TPR repeat; P 99.1 1.9E-10 4.2E-15 86.5 8.0 65 84-148 3-69 (69)
70 PRK10049 pgaA outer membrane p 99.1 1E-09 2.2E-14 120.6 17.0 132 60-194 27-159 (765)
71 PRK10049 pgaA outer membrane p 99.1 7.6E-10 1.7E-14 121.6 15.4 185 18-210 249-462 (765)
72 PRK15363 pathogenicity island 99.1 6.8E-10 1.5E-14 96.1 10.4 89 59-149 46-135 (157)
73 PF13429 TPR_15: Tetratricopep 99.1 5.5E-10 1.2E-14 108.0 10.4 155 53-210 82-249 (280)
74 COG4783 Putative Zn-dependent 99.1 3.2E-09 6.9E-14 105.7 15.4 138 59-198 317-455 (484)
75 KOG0376 Serine-threonine phosp 99.1 2.2E-10 4.7E-15 113.9 7.2 115 86-200 6-121 (476)
76 KOG0624 dsRNA-activated protei 99.1 2E-09 4.4E-14 102.5 13.0 117 82-198 36-156 (504)
77 COG4235 Cytochrome c biogenesi 99.1 3.9E-09 8.5E-14 99.9 15.0 130 62-193 136-269 (287)
78 COG5010 TadD Flp pilus assembl 99.1 5.8E-09 1.3E-13 96.5 15.7 135 60-196 78-213 (257)
79 KOG1128 Uncharacterized conser 99.0 1.1E-09 2.5E-14 113.0 11.6 189 12-205 417-617 (777)
80 KOG2002 TPR-containing nuclear 99.0 5.7E-09 1.2E-13 110.7 16.9 137 55-191 205-382 (1018)
81 TIGR02552 LcrH_SycD type III s 99.0 2E-09 4.4E-14 91.9 11.1 103 105-207 4-117 (135)
82 PF12895 Apc3: Anaphase-promot 99.0 6E-10 1.3E-14 87.4 7.0 80 97-177 2-84 (84)
83 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.6E-14 81.2 8.3 64 122-185 2-65 (65)
84 KOG0545 Aryl-hydrocarbon recep 99.0 2.6E-09 5.7E-14 97.5 12.0 103 85-187 179-300 (329)
85 KOG3060 Uncharacterized conser 99.0 1.4E-08 3E-13 93.4 15.6 123 61-185 99-225 (289)
86 PRK14574 hmsH outer membrane p 99.0 6.2E-09 1.3E-13 113.7 15.6 149 59-209 45-203 (822)
87 PRK15331 chaperone protein Sic 99.0 5.1E-09 1.1E-13 91.2 12.0 100 87-187 40-140 (165)
88 KOG2076 RNA polymerase III tra 99.0 1.4E-08 3.1E-13 107.1 17.1 122 59-182 150-272 (895)
89 KOG4162 Predicted calmodulin-b 99.0 3.1E-09 6.8E-14 110.4 11.9 124 60-185 662-788 (799)
90 PRK10803 tol-pal system protei 98.9 2E-08 4.3E-13 95.9 15.0 103 85-187 143-253 (263)
91 PF09976 TPR_21: Tetratricopep 98.9 1.6E-08 3.5E-13 87.9 13.2 118 60-178 23-145 (145)
92 KOG1840 Kinesin light chain [C 98.9 3E-09 6.6E-14 109.3 9.7 149 55-205 205-397 (508)
93 PF13432 TPR_16: Tetratricopep 98.9 5.3E-09 1.2E-13 77.6 8.4 64 88-151 1-65 (65)
94 KOG3060 Uncharacterized conser 98.9 5.3E-08 1.1E-12 89.6 16.2 145 60-206 64-222 (289)
95 COG1729 Uncharacterized protei 98.9 6.6E-08 1.4E-12 90.6 16.9 102 87-188 144-252 (262)
96 KOG1840 Kinesin light chain [C 98.9 1.6E-08 3.5E-13 104.1 14.0 182 6-188 241-450 (508)
97 PF12895 Apc3: Anaphase-promot 98.9 2.2E-09 4.8E-14 84.2 6.0 82 61-143 2-84 (84)
98 COG5010 TadD Flp pilus assembl 98.9 1.6E-08 3.4E-13 93.6 12.2 115 60-176 112-227 (257)
99 KOG1174 Anaphase-promoting com 98.9 3.6E-08 7.9E-13 96.1 14.9 156 53-210 305-506 (564)
100 KOG1156 N-terminal acetyltrans 98.9 6.5E-08 1.4E-12 99.0 17.4 121 59-181 52-173 (700)
101 cd05804 StaR_like StaR_like; a 98.9 1.2E-08 2.6E-13 101.7 12.1 123 59-184 54-181 (355)
102 KOG2002 TPR-containing nuclear 98.9 6.7E-09 1.4E-13 110.3 10.6 137 62-200 626-765 (1018)
103 PRK10153 DNA-binding transcrip 98.9 1.7E-08 3.6E-13 105.4 13.2 125 60-187 354-489 (517)
104 KOG2003 TPR repeat-containing 98.9 3.8E-08 8.2E-13 96.8 14.5 149 57-207 499-658 (840)
105 PRK14574 hmsH outer membrane p 98.9 5.4E-08 1.2E-12 106.4 16.2 167 20-198 48-216 (822)
106 PF12688 TPR_5: Tetratrico pep 98.8 9.1E-08 2E-12 80.1 13.8 108 87-200 4-118 (120)
107 COG2956 Predicted N-acetylgluc 98.8 3.1E-08 6.8E-13 93.9 11.9 144 53-198 111-262 (389)
108 PRK11906 transcriptional regul 98.8 6.3E-08 1.4E-12 97.0 14.4 123 62-186 272-407 (458)
109 KOG2076 RNA polymerase III tra 98.8 1E-07 2.2E-12 100.9 15.7 124 83-206 138-272 (895)
110 KOG0543 FKBP-type peptidyl-pro 98.8 3.2E-08 7E-13 96.8 11.3 114 55-168 214-342 (397)
111 KOG1174 Anaphase-promoting com 98.8 4.8E-08 1E-12 95.3 11.9 138 48-187 231-370 (564)
112 KOG2003 TPR repeat-containing 98.8 2.7E-08 5.8E-13 97.8 9.7 128 63-192 471-599 (840)
113 KOG1128 Uncharacterized conser 98.8 3.7E-08 8.1E-13 102.0 11.2 155 11-182 462-618 (777)
114 PRK02603 photosystem I assembl 98.8 3.9E-08 8.4E-13 88.1 9.9 114 52-185 38-154 (172)
115 TIGR02795 tol_pal_ybgF tol-pal 98.8 4.8E-08 1E-12 80.9 9.7 95 60-154 14-113 (119)
116 PF13525 YfiO: Outer membrane 98.8 2.1E-07 4.6E-12 85.7 14.9 140 59-198 16-188 (203)
117 PF13512 TPR_18: Tetratricopep 98.7 3.6E-07 7.8E-12 78.0 13.6 103 85-187 11-135 (142)
118 PRK14720 transcript cleavage f 98.7 7.1E-08 1.5E-12 104.8 11.2 134 44-182 26-180 (906)
119 PRK10866 outer membrane biogen 98.7 6.8E-07 1.5E-11 84.6 16.4 140 59-198 43-222 (243)
120 PF13371 TPR_9: Tetratricopept 98.7 6.5E-08 1.4E-12 73.4 7.6 64 124-187 2-65 (73)
121 cd00189 TPR Tetratricopeptide 98.7 1.1E-07 2.4E-12 73.4 9.1 88 60-149 12-100 (100)
122 PF13371 TPR_9: Tetratricopept 98.7 9.8E-08 2.1E-12 72.4 7.9 69 91-159 2-71 (73)
123 KOG4555 TPR repeat-containing 98.7 3.9E-07 8.5E-12 75.7 11.8 98 87-184 46-148 (175)
124 KOG1127 TPR repeat-containing 98.7 1.1E-07 2.5E-12 101.1 10.7 151 51-203 494-658 (1238)
125 PRK10153 DNA-binding transcrip 98.7 4.8E-07 1E-11 94.5 15.2 133 77-210 332-488 (517)
126 COG4783 Putative Zn-dependent 98.7 6.8E-07 1.5E-11 89.3 15.4 120 79-200 303-423 (484)
127 CHL00033 ycf3 photosystem I as 98.6 4.5E-07 9.7E-12 80.8 12.5 101 92-192 7-113 (168)
128 cd05804 StaR_like StaR_like; a 98.6 6.9E-07 1.5E-11 89.0 15.3 120 62-183 94-218 (355)
129 KOG4234 TPR repeat-containing 98.6 2.4E-07 5.3E-12 82.4 10.4 95 59-153 106-204 (271)
130 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.3E-07 2.8E-12 94.6 9.6 69 77-147 70-142 (453)
131 PRK10803 tol-pal system protei 98.6 1.8E-07 3.9E-12 89.3 10.1 94 60-153 155-253 (263)
132 PF14559 TPR_19: Tetratricopep 98.6 1.2E-07 2.6E-12 70.8 7.1 60 129-188 3-62 (68)
133 KOG1156 N-terminal acetyltrans 98.6 1.1E-07 2.3E-12 97.5 8.9 134 53-188 12-146 (700)
134 PRK10747 putative protoheme IX 98.6 8.8E-07 1.9E-11 90.2 15.6 142 60-203 165-389 (398)
135 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 2.9E-12 70.5 6.8 66 94-159 1-67 (68)
136 PRK10866 outer membrane biogen 98.6 1.8E-06 3.9E-11 81.7 15.9 104 84-187 32-160 (243)
137 PRK14720 transcript cleavage f 98.6 5.5E-07 1.2E-11 98.0 13.9 125 77-205 26-179 (906)
138 PF13525 YfiO: Outer membrane 98.6 1.6E-06 3.5E-11 79.8 14.8 103 85-187 6-126 (203)
139 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.9E-07 8.5E-12 91.2 11.1 68 113-180 70-141 (453)
140 PRK15331 chaperone protein Sic 98.5 4.8E-07 1E-11 78.9 9.4 90 59-151 48-138 (165)
141 PF06552 TOM20_plant: Plant sp 98.5 7.1E-07 1.5E-11 78.6 10.5 93 100-192 7-121 (186)
142 COG2956 Predicted N-acetylgluc 98.5 2.3E-06 5E-11 81.4 14.6 118 63-183 195-314 (389)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.1E-06 2.5E-11 88.1 13.2 113 60-177 181-294 (395)
144 PF13424 TPR_12: Tetratricopep 98.5 1.9E-07 4.1E-12 71.9 5.8 64 117-180 5-75 (78)
145 PRK11906 transcriptional regul 98.5 2E-06 4.2E-11 86.4 14.4 127 83-209 252-406 (458)
146 KOG4162 Predicted calmodulin-b 98.5 1.3E-06 2.7E-11 91.4 13.0 121 87-207 653-786 (799)
147 KOG0495 HAT repeat protein [RN 98.5 1.9E-06 4.1E-11 88.6 13.5 147 60-208 596-752 (913)
148 TIGR00540 hemY_coli hemY prote 98.5 1.9E-06 4.1E-11 88.0 13.8 140 63-204 240-399 (409)
149 COG4785 NlpI Lipoprotein NlpI, 98.5 4.8E-07 1E-11 81.6 7.8 105 82-186 63-168 (297)
150 KOG1127 TPR repeat-containing 98.5 1.1E-06 2.5E-11 93.7 11.7 167 10-185 496-664 (1238)
151 KOG1130 Predicted G-alpha GTPa 98.5 2.6E-07 5.5E-12 90.2 6.3 48 51-98 97-149 (639)
152 COG1729 Uncharacterized protei 98.5 2.2E-06 4.7E-11 80.5 12.2 97 60-156 153-254 (262)
153 TIGR00540 hemY_coli hemY prote 98.4 5.2E-06 1.1E-10 84.8 15.8 127 59-187 95-223 (409)
154 PF14938 SNAP: Soluble NSF att 98.4 3.4E-07 7.4E-12 88.7 6.7 172 11-185 40-230 (282)
155 PF04733 Coatomer_E: Coatomer 98.4 6.7E-06 1.4E-10 79.8 14.6 125 60-186 143-271 (290)
156 KOG0495 HAT repeat protein [RN 98.4 8.4E-06 1.8E-10 83.9 15.0 126 60-187 663-789 (913)
157 KOG2376 Signal recognition par 98.4 4.7E-06 1E-10 84.9 13.1 118 60-186 24-145 (652)
158 KOG1308 Hsp70-interacting prot 98.4 1.8E-07 3.9E-12 89.5 2.8 97 87-183 117-214 (377)
159 PF13424 TPR_12: Tetratricopep 98.4 9.9E-07 2.2E-11 67.8 6.1 63 84-146 5-75 (78)
160 KOG1130 Predicted G-alpha GTPa 98.3 3E-06 6.5E-11 82.9 10.6 131 51-181 197-345 (639)
161 PRK10747 putative protoheme IX 98.3 1.6E-05 3.4E-10 81.0 15.7 129 60-190 96-226 (398)
162 PF09976 TPR_21: Tetratricopep 98.3 1.8E-05 3.9E-10 68.6 13.1 90 87-176 14-110 (145)
163 PF13512 TPR_18: Tetratricopep 98.3 7.2E-06 1.6E-10 70.1 9.7 95 59-153 21-135 (142)
164 COG4235 Cytochrome c biogenesi 98.3 1.3E-05 2.9E-10 76.2 12.4 106 100-205 138-257 (287)
165 KOG3785 Uncharacterized conser 98.3 2E-05 4.4E-10 75.9 13.6 126 60-186 34-186 (557)
166 COG4785 NlpI Lipoprotein NlpI, 98.2 5.2E-06 1.1E-10 75.0 8.8 100 51-152 67-168 (297)
167 PF12569 NARP1: NMDA receptor- 98.2 2E-05 4.4E-10 82.1 14.4 70 118-187 195-264 (517)
168 PF14938 SNAP: Soluble NSF att 98.2 3.1E-06 6.7E-11 82.0 7.4 129 54-183 40-187 (282)
169 KOG4555 TPR repeat-containing 98.2 1.1E-05 2.5E-10 67.1 9.3 90 60-151 55-149 (175)
170 PF06552 TOM20_plant: Plant sp 98.2 9.9E-06 2.1E-10 71.5 9.1 87 64-152 7-115 (186)
171 PF04733 Coatomer_E: Coatomer 98.1 2E-05 4.3E-10 76.6 10.9 130 60-196 114-246 (290)
172 KOG4340 Uncharacterized conser 98.1 4.4E-05 9.5E-10 72.2 11.8 144 60-205 22-208 (459)
173 PF12688 TPR_5: Tetratrico pep 98.1 3.7E-05 8E-10 64.4 10.1 86 60-145 13-103 (120)
174 KOG2376 Signal recognition par 98.0 0.00011 2.3E-09 75.2 14.6 146 20-180 26-204 (652)
175 COG4700 Uncharacterized protei 98.0 0.00028 6E-09 62.6 14.1 116 67-185 75-194 (251)
176 PLN03218 maturation of RBCL 1; 98.0 0.00015 3.3E-09 81.8 15.9 118 60-179 626-747 (1060)
177 PF13431 TPR_17: Tetratricopep 97.9 8E-06 1.7E-10 52.3 2.8 33 139-171 1-33 (34)
178 PF00515 TPR_1: Tetratricopept 97.9 1.8E-05 4E-10 50.4 4.6 32 152-183 2-33 (34)
179 PF12569 NARP1: NMDA receptor- 97.9 0.00025 5.5E-09 74.0 15.5 98 84-181 194-292 (517)
180 PF00515 TPR_1: Tetratricopept 97.9 1.7E-05 3.6E-10 50.5 4.2 34 117-150 1-34 (34)
181 KOG0376 Serine-threonine phosp 97.9 1E-05 2.2E-10 81.0 4.8 103 59-163 15-118 (476)
182 KOG4642 Chaperone-dependent E3 97.9 3.5E-05 7.7E-10 70.6 7.6 86 59-146 21-107 (284)
183 COG4105 ComL DNA uptake lipopr 97.9 0.00065 1.4E-08 63.5 16.1 141 59-199 45-215 (254)
184 KOG2796 Uncharacterized conser 97.9 0.00038 8.2E-09 64.9 14.2 125 60-186 189-321 (366)
185 PLN03218 maturation of RBCL 1; 97.9 0.00026 5.7E-09 80.0 15.7 120 60-181 484-609 (1060)
186 PF13428 TPR_14: Tetratricopep 97.9 2.7E-05 5.9E-10 52.9 5.0 40 119-158 3-42 (44)
187 PLN03081 pentatricopeptide (PP 97.9 0.00019 4.1E-09 78.5 14.0 176 11-201 365-554 (697)
188 KOG1310 WD40 repeat protein [G 97.9 7.6E-05 1.6E-09 75.3 9.5 101 87-187 377-481 (758)
189 PF07719 TPR_2: Tetratricopept 97.8 4.8E-05 1E-09 48.2 5.1 33 152-184 2-34 (34)
190 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00092 2E-08 59.3 15.4 120 62-183 109-234 (291)
191 PLN03081 pentatricopeptide (PP 97.8 0.00015 3.4E-09 79.2 11.7 180 13-206 332-525 (697)
192 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00069 1.5E-08 60.2 14.0 124 60-183 142-268 (291)
193 PF13428 TPR_14: Tetratricopep 97.8 5.6E-05 1.2E-09 51.3 5.2 43 151-193 1-43 (44)
194 COG4700 Uncharacterized protei 97.7 0.00054 1.2E-08 60.8 12.1 122 54-178 94-220 (251)
195 COG4105 ComL DNA uptake lipopr 97.7 0.0015 3.3E-08 61.0 14.9 102 84-185 34-150 (254)
196 PF07719 TPR_2: Tetratricopept 97.7 8.7E-05 1.9E-09 47.0 4.5 33 118-150 2-34 (34)
197 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00028 6E-09 67.8 9.2 98 53-150 85-186 (390)
198 PLN03077 Protein ECB2; Provisi 97.6 0.00061 1.3E-08 76.3 13.4 90 87-176 557-650 (857)
199 PLN03077 Protein ECB2; Provisi 97.6 0.0006 1.3E-08 76.4 13.3 162 11-190 529-696 (857)
200 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0012 2.5E-08 66.7 13.8 105 92-198 177-281 (395)
201 KOG1941 Acetylcholine receptor 97.6 0.00018 3.8E-09 69.8 7.3 129 55-183 128-278 (518)
202 PF13431 TPR_17: Tetratricopep 97.6 5.5E-05 1.2E-09 48.3 2.7 32 106-137 1-33 (34)
203 KOG0545 Aryl-hydrocarbon recep 97.5 0.00062 1.3E-08 62.9 9.9 103 53-155 182-302 (329)
204 PRK04841 transcriptional regul 97.5 0.00076 1.6E-08 75.9 13.1 123 60-182 464-604 (903)
205 KOG3081 Vesicle coat complex C 97.5 0.0032 6.9E-08 59.0 14.5 88 98-185 187-276 (299)
206 KOG4507 Uncharacterized conser 97.5 0.00017 3.6E-09 73.7 6.5 107 88-194 611-719 (886)
207 KOG1915 Cell cycle control pro 97.5 0.0026 5.7E-08 63.9 14.6 146 60-205 378-537 (677)
208 PF10300 DUF3808: Protein of u 97.5 0.0012 2.7E-08 68.5 12.4 104 62-167 247-356 (468)
209 KOG1586 Protein required for f 97.4 0.0027 5.9E-08 58.3 12.1 171 12-187 40-231 (288)
210 KOG1308 Hsp70-interacting prot 97.3 7E-05 1.5E-09 72.1 1.2 89 59-149 125-214 (377)
211 PF03704 BTAD: Bacterial trans 97.3 0.0073 1.6E-07 52.1 13.0 91 89-179 11-124 (146)
212 KOG3081 Vesicle coat complex C 97.3 0.004 8.6E-08 58.4 11.6 128 60-195 120-251 (299)
213 PF12968 DUF3856: Domain of Un 97.2 0.0061 1.3E-07 50.2 11.1 92 89-180 14-129 (144)
214 PF13181 TPR_8: Tetratricopept 97.2 0.00059 1.3E-08 43.1 4.2 32 152-183 2-33 (34)
215 KOG0546 HSP90 co-chaperone CPR 97.2 0.0005 1.1E-08 66.6 4.8 110 87-196 225-354 (372)
216 KOG1915 Cell cycle control pro 97.1 0.018 3.9E-07 58.1 15.6 145 62-208 87-277 (677)
217 COG3071 HemY Uncharacterized e 97.1 0.0058 1.2E-07 60.2 11.9 115 60-180 275-390 (400)
218 KOG2471 TPR repeat-containing 97.1 0.00047 1E-08 69.2 4.3 104 59-162 251-380 (696)
219 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0036 7.8E-08 44.2 7.5 39 152-190 2-40 (53)
220 PF13181 TPR_8: Tetratricopept 97.1 0.00074 1.6E-08 42.7 3.7 32 118-149 2-33 (34)
221 PRK04841 transcriptional regul 97.1 0.0065 1.4E-07 68.4 13.7 122 60-181 421-561 (903)
222 KOG3785 Uncharacterized conser 97.1 0.0017 3.8E-08 62.9 7.6 85 93-177 31-117 (557)
223 PRK10941 hypothetical protein; 97.1 0.006 1.3E-07 58.4 11.2 71 117-187 181-251 (269)
224 KOG1941 Acetylcholine receptor 97.0 0.005 1.1E-07 60.0 10.3 157 13-182 20-193 (518)
225 KOG1586 Protein required for f 97.0 0.012 2.6E-07 54.2 12.0 96 92-187 81-190 (288)
226 KOG2053 Mitochondrial inherita 97.0 0.0075 1.6E-07 64.8 11.7 124 60-186 21-145 (932)
227 KOG2610 Uncharacterized conser 96.9 0.0099 2.1E-07 57.5 11.2 147 56-204 111-276 (491)
228 KOG4340 Uncharacterized conser 96.9 0.0098 2.1E-07 56.6 10.6 85 93-177 19-104 (459)
229 COG2976 Uncharacterized protei 96.9 0.024 5.2E-07 50.9 12.4 118 67-185 71-193 (207)
230 KOG1070 rRNA processing protei 96.9 0.024 5.1E-07 63.8 14.9 186 14-205 1466-1664(1710)
231 PF05843 Suf: Suppressor of fo 96.8 0.022 4.8E-07 55.1 12.9 99 87-185 4-104 (280)
232 KOG2471 TPR repeat-containing 96.8 0.0053 1.2E-07 61.9 8.6 126 72-199 230-383 (696)
233 PF15015 NYD-SP12_N: Spermatog 96.8 0.011 2.4E-07 58.6 10.3 91 88-178 180-289 (569)
234 PF05843 Suf: Suppressor of fo 96.7 0.043 9.3E-07 53.1 14.2 121 64-186 17-142 (280)
235 KOG2796 Uncharacterized conser 96.7 0.025 5.4E-07 53.1 11.6 113 87-199 180-300 (366)
236 PF13174 TPR_6: Tetratricopept 96.6 0.0037 8E-08 38.9 4.2 31 153-183 2-32 (33)
237 PF04184 ST7: ST7 protein; In 96.6 0.066 1.4E-06 54.6 14.6 101 87-187 262-382 (539)
238 COG3118 Thioredoxin domain-con 96.5 0.068 1.5E-06 51.1 13.3 136 60-198 146-285 (304)
239 PF13176 TPR_7: Tetratricopept 96.5 0.0057 1.2E-07 39.4 4.2 29 153-181 1-29 (36)
240 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.014 3E-07 41.2 6.5 43 118-160 2-44 (53)
241 COG3071 HemY Uncharacterized e 96.4 0.12 2.6E-06 51.1 15.2 122 59-182 95-218 (400)
242 KOG2053 Mitochondrial inherita 96.4 0.051 1.1E-06 58.7 12.9 93 94-187 19-112 (932)
243 smart00028 TPR Tetratricopepti 96.3 0.0069 1.5E-07 36.3 4.0 27 121-147 5-31 (34)
244 smart00028 TPR Tetratricopepti 96.3 0.006 1.3E-07 36.6 3.7 33 152-184 2-34 (34)
245 PF13281 DUF4071: Domain of un 96.3 0.086 1.9E-06 52.7 13.6 167 15-188 150-342 (374)
246 PF09986 DUF2225: Uncharacteri 96.3 0.066 1.4E-06 49.6 11.8 92 94-185 87-199 (214)
247 KOG4151 Myosin assembly protei 96.3 0.019 4E-07 61.3 9.0 114 85-198 54-174 (748)
248 KOG4814 Uncharacterized conser 96.2 0.044 9.6E-07 57.1 11.1 95 87-181 357-458 (872)
249 PF13174 TPR_6: Tetratricopept 96.2 0.0079 1.7E-07 37.3 3.8 31 119-149 2-32 (33)
250 PF10300 DUF3808: Protein of u 96.2 0.14 3.1E-06 53.3 15.1 122 62-184 202-338 (468)
251 KOG3364 Membrane protein invol 96.2 0.11 2.4E-06 43.9 11.4 75 114-188 29-108 (149)
252 PF03704 BTAD: Bacterial trans 96.2 0.044 9.5E-07 47.2 9.6 59 87-145 65-124 (146)
253 PF13176 TPR_7: Tetratricopept 96.1 0.0096 2.1E-07 38.3 3.7 28 119-146 1-28 (36)
254 PF04781 DUF627: Protein of un 96.0 0.084 1.8E-06 43.1 9.8 90 91-180 3-107 (111)
255 PF04184 ST7: ST7 protein; In 96.0 0.058 1.3E-06 55.0 10.7 114 60-177 180-321 (539)
256 PRK10941 hypothetical protein; 95.9 0.064 1.4E-06 51.4 10.4 76 85-160 182-258 (269)
257 KOG3824 Huntingtin interacting 95.9 0.027 5.9E-07 53.9 7.6 70 89-158 121-191 (472)
258 KOG2047 mRNA splicing factor [ 95.9 0.3 6.4E-06 51.4 15.2 145 60-204 359-540 (835)
259 KOG3824 Huntingtin interacting 95.8 0.032 6.9E-07 53.4 7.6 70 121-190 120-189 (472)
260 PF10602 RPN7: 26S proteasome 95.8 0.12 2.6E-06 46.3 11.0 96 87-182 39-144 (177)
261 KOG4507 Uncharacterized conser 95.7 0.051 1.1E-06 56.2 8.8 104 84-187 212-319 (886)
262 PF09986 DUF2225: Uncharacteri 95.7 0.11 2.3E-06 48.2 10.3 90 60-149 89-197 (214)
263 KOG2047 mRNA splicing factor [ 95.6 0.28 6E-06 51.5 14.0 198 5-205 342-580 (835)
264 PF02259 FAT: FAT domain; Int 95.6 0.19 4.1E-06 49.7 12.7 103 60-164 158-305 (352)
265 COG4976 Predicted methyltransf 95.6 0.02 4.2E-07 52.7 4.9 57 128-184 6-62 (287)
266 KOG2396 HAT (Half-A-TPR) repea 95.5 0.24 5.2E-06 50.5 12.7 98 101-198 88-187 (568)
267 KOG3364 Membrane protein invol 95.5 0.15 3.2E-06 43.1 9.3 80 82-161 30-115 (149)
268 KOG3617 WD40 and TPR repeat-co 95.4 0.027 5.9E-07 60.2 5.9 107 60-178 870-994 (1416)
269 PF04781 DUF627: Protein of un 95.4 0.088 1.9E-06 43.0 7.6 89 59-147 7-108 (111)
270 COG3914 Spy Predicted O-linked 95.3 0.36 7.7E-06 50.3 13.4 128 67-194 50-185 (620)
271 COG2912 Uncharacterized conser 95.2 0.28 6E-06 46.6 11.5 71 117-187 181-251 (269)
272 KOG1070 rRNA processing protei 95.2 0.32 7E-06 55.2 13.6 125 58-184 1539-1667(1710)
273 COG3898 Uncharacterized membra 94.9 0.66 1.4E-05 46.1 13.4 121 60-183 166-295 (531)
274 KOG2300 Uncharacterized conser 94.8 0.46 1E-05 48.4 12.3 119 60-181 335-475 (629)
275 PF14561 TPR_20: Tetratricopep 94.5 0.22 4.8E-06 39.3 7.6 48 137-184 8-55 (90)
276 KOG1550 Extracellular protein 94.3 0.82 1.8E-05 48.7 13.9 113 62-181 263-394 (552)
277 COG4976 Predicted methyltransf 94.2 0.075 1.6E-06 49.0 4.8 59 93-151 4-63 (287)
278 PF12968 DUF3856: Domain of Un 94.2 0.2 4.3E-06 41.5 6.7 85 62-146 23-129 (144)
279 KOG1585 Protein required for f 94.1 2.3 4.9E-05 39.9 14.2 97 87-183 34-142 (308)
280 COG3898 Uncharacterized membra 94.1 0.49 1.1E-05 47.0 10.5 137 61-203 242-391 (531)
281 PF09613 HrpB1_HrpK: Bacterial 94.1 0.75 1.6E-05 40.3 10.6 95 87-182 13-108 (160)
282 KOG2610 Uncharacterized conser 94.1 0.53 1.2E-05 45.9 10.5 99 89-187 108-211 (491)
283 KOG1585 Protein required for f 94.0 0.43 9.4E-06 44.5 9.4 122 60-181 83-220 (308)
284 PF13374 TPR_10: Tetratricopep 94.0 0.099 2.2E-06 34.1 4.1 25 120-144 5-29 (42)
285 PF13374 TPR_10: Tetratricopep 93.9 0.14 2.9E-06 33.4 4.6 31 151-181 2-32 (42)
286 PF08631 SPO22: Meiosis protei 93.8 2.1 4.5E-05 41.3 14.4 124 59-182 4-152 (278)
287 PF14561 TPR_20: Tetratricopep 93.7 0.76 1.6E-05 36.3 9.3 44 106-149 10-54 (90)
288 KOG0530 Protein farnesyltransf 93.6 3.4 7.3E-05 39.2 14.4 124 62-187 57-183 (318)
289 COG5191 Uncharacterized conser 93.5 0.2 4.2E-06 48.3 6.3 93 107-199 96-190 (435)
290 COG2976 Uncharacterized protei 93.3 0.35 7.5E-06 43.6 7.4 90 60-151 101-193 (207)
291 COG4649 Uncharacterized protei 93.2 5.7 0.00012 35.4 14.5 127 60-187 70-202 (221)
292 PRK13184 pknD serine/threonine 93.2 0.67 1.4E-05 51.9 10.9 99 88-187 479-588 (932)
293 PRK15180 Vi polysaccharide bio 93.1 0.4 8.7E-06 48.7 8.2 124 59-184 300-424 (831)
294 COG0790 FOG: TPR repeat, SEL1 93.1 2.6 5.5E-05 40.6 14.0 114 63-182 92-222 (292)
295 KOG1310 WD40 repeat protein [G 92.9 0.26 5.7E-06 50.6 6.7 90 60-151 386-479 (758)
296 PF02259 FAT: FAT domain; Int 92.6 3.1 6.7E-05 40.9 14.1 113 83-195 145-302 (352)
297 COG0790 FOG: TPR repeat, SEL1 92.5 3.2 6.9E-05 40.0 13.7 116 62-182 127-268 (292)
298 PF13281 DUF4071: Domain of un 92.4 2.1 4.6E-05 42.9 12.3 98 87-184 144-259 (374)
299 PF10516 SHNi-TPR: SHNi-TPR; 92.4 0.21 4.6E-06 32.6 3.5 30 152-181 2-31 (38)
300 KOG1550 Extracellular protein 92.2 1.8 4E-05 46.0 12.5 123 51-180 290-426 (552)
301 PF07079 DUF1347: Protein of u 91.9 7.5 0.00016 39.7 15.3 136 60-203 391-544 (549)
302 PF12862 Apc5: Anaphase-promot 91.6 0.68 1.5E-05 36.7 6.5 30 152-181 42-71 (94)
303 PF09613 HrpB1_HrpK: Bacterial 91.6 1.1 2.4E-05 39.3 8.1 73 60-134 22-95 (160)
304 PF10579 Rapsyn_N: Rapsyn N-te 91.5 1.4 3E-05 33.7 7.5 59 87-145 9-71 (80)
305 COG3118 Thioredoxin domain-con 91.5 2.3 4.9E-05 41.0 10.7 99 87-188 137-239 (304)
306 PF10373 EST1_DNA_bind: Est1 D 91.3 0.82 1.8E-05 43.6 8.0 40 105-144 3-43 (278)
307 PF12862 Apc5: Anaphase-promot 91.2 1.4 3E-05 35.0 7.9 59 92-150 6-74 (94)
308 PF07720 TPR_3: Tetratricopept 90.9 0.77 1.7E-05 29.5 5.0 33 152-184 2-36 (36)
309 PF15015 NYD-SP12_N: Spermatog 90.7 0.26 5.7E-06 49.3 3.8 90 55-144 183-289 (569)
310 KOG2396 HAT (Half-A-TPR) repea 90.6 1.9 4.1E-05 44.3 9.7 87 66-154 89-177 (568)
311 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.45 9.8E-06 31.0 3.5 29 118-146 2-30 (38)
312 COG2912 Uncharacterized conser 90.3 1.7 3.7E-05 41.4 8.7 73 87-159 184-257 (269)
313 KOG0530 Protein farnesyltransf 90.2 4.4 9.5E-05 38.4 11.1 104 95-198 54-160 (318)
314 PF08424 NRDE-2: NRDE-2, neces 89.8 8.9 0.00019 37.8 13.9 111 69-181 6-132 (321)
315 KOG2300 Uncharacterized conser 89.6 9.6 0.00021 39.2 13.7 122 60-184 379-518 (629)
316 PF10373 EST1_DNA_bind: Est1 D 89.5 1.1 2.5E-05 42.6 7.2 62 136-197 1-62 (278)
317 KOG0686 COP9 signalosome, subu 89.5 2.1 4.4E-05 42.9 8.8 91 87-177 153-255 (466)
318 TIGR02561 HrpB1_HrpK type III 89.0 4.6 0.0001 35.0 9.6 80 89-168 15-95 (153)
319 PF08631 SPO22: Meiosis protei 88.9 7 0.00015 37.6 12.2 94 94-187 3-123 (278)
320 PF08424 NRDE-2: NRDE-2, neces 88.9 6.4 0.00014 38.8 12.2 119 64-184 47-187 (321)
321 KOG0529 Protein geranylgeranyl 87.2 15 0.00032 37.0 13.2 131 66-196 47-194 (421)
322 PF10255 Paf67: RNA polymerase 87.0 2.8 6.1E-05 42.5 8.3 96 87-183 125-231 (404)
323 TIGR02561 HrpB1_HrpK type III 86.8 3 6.5E-05 36.1 7.2 71 61-133 23-94 (153)
324 PF04910 Tcf25: Transcriptiona 86.8 5.1 0.00011 40.2 10.1 37 74-112 32-68 (360)
325 KOG2041 WD40 repeat protein [G 86.7 3.5 7.5E-05 44.1 8.8 81 85-176 797-877 (1189)
326 KOG0546 HSP90 co-chaperone CPR 85.9 0.61 1.3E-05 45.7 2.8 109 59-167 233-359 (372)
327 PRK15180 Vi polysaccharide bio 85.8 9.1 0.0002 39.3 11.0 112 94-205 299-421 (831)
328 PF07721 TPR_4: Tetratricopept 85.6 1.2 2.6E-05 26.2 3.0 18 155-172 5-22 (26)
329 PF07721 TPR_4: Tetratricopept 85.4 1.1 2.4E-05 26.3 2.8 24 118-141 2-25 (26)
330 PF07079 DUF1347: Protein of u 85.4 4 8.6E-05 41.6 8.2 56 88-143 466-521 (549)
331 COG3629 DnrI DNA-binding trans 85.2 5 0.00011 38.6 8.6 64 117-180 153-216 (280)
332 KOG3616 Selective LIM binding 85.1 5.4 0.00012 42.9 9.3 115 53-177 769-908 (1636)
333 PF07720 TPR_3: Tetratricopept 84.7 2.6 5.6E-05 27.1 4.5 20 87-106 4-23 (36)
334 PF10345 Cohesin_load: Cohesin 84.0 46 0.001 35.9 16.5 122 65-187 38-177 (608)
335 KOG4814 Uncharacterized conser 83.9 13 0.00029 39.5 11.4 71 118-188 355-431 (872)
336 KOG0529 Protein geranylgeranyl 83.9 12 0.00025 37.8 10.7 125 62-188 89-232 (421)
337 PF10602 RPN7: 26S proteasome 83.3 21 0.00045 31.9 11.4 76 117-192 36-116 (177)
338 KOG3617 WD40 and TPR repeat-co 83.2 7.5 0.00016 42.5 9.5 63 117-179 858-940 (1416)
339 KOG0985 Vesicle coat protein c 82.9 3.4 7.3E-05 46.0 7.0 123 51-180 1106-1249(1666)
340 KOG2581 26S proteasome regulat 82.6 20 0.00044 36.1 11.7 125 60-184 138-280 (493)
341 cd02682 MIT_AAA_Arch MIT: doma 82.5 6.8 0.00015 29.8 6.6 26 87-112 9-34 (75)
342 PRK13184 pknD serine/threonine 82.2 14 0.0003 41.8 11.7 125 60-187 487-627 (932)
343 cd02682 MIT_AAA_Arch MIT: doma 82.0 5 0.00011 30.5 5.7 38 168-205 30-67 (75)
344 COG3947 Response regulator con 81.9 5.7 0.00012 38.2 7.3 57 121-177 283-339 (361)
345 PF11817 Foie-gras_1: Foie gra 81.6 7.4 0.00016 36.8 8.3 61 117-177 178-244 (247)
346 TIGR03504 FimV_Cterm FimV C-te 81.3 6.1 0.00013 26.6 5.4 25 155-179 3-27 (44)
347 PF04910 Tcf25: Transcriptiona 81.2 16 0.00035 36.7 10.9 97 87-183 106-225 (360)
348 PF11207 DUF2989: Protein of u 80.9 8.6 0.00019 35.1 7.9 69 101-171 123-198 (203)
349 PF10579 Rapsyn_N: Rapsyn N-te 80.2 15 0.00032 28.2 7.7 61 120-180 9-72 (80)
350 COG2909 MalT ATP-dependent tra 80.2 42 0.0009 37.2 14.0 114 88-201 419-551 (894)
351 PF10255 Paf67: RNA polymerase 80.0 16 0.00034 37.2 10.3 101 79-180 70-193 (404)
352 COG4941 Predicted RNA polymera 79.9 14 0.00031 36.3 9.4 89 99-187 311-401 (415)
353 PF11207 DUF2989: Protein of u 79.5 21 0.00045 32.6 9.8 73 63-137 121-198 (203)
354 COG5191 Uncharacterized conser 78.9 3.7 8.1E-05 39.8 5.1 84 71-156 96-181 (435)
355 COG3914 Spy Predicted O-linked 78.6 23 0.00049 37.4 11.0 106 60-167 79-192 (620)
356 KOG0686 COP9 signalosome, subu 78.6 10 0.00022 38.1 8.2 147 54-200 155-329 (466)
357 PF09670 Cas_Cas02710: CRISPR- 78.3 16 0.00034 37.0 9.8 68 79-146 126-198 (379)
358 KOG1839 Uncharacterized protei 77.9 8.1 0.00017 44.2 8.1 118 61-181 945-1087(1236)
359 KOG1258 mRNA processing protei 77.3 62 0.0014 34.3 13.8 111 60-172 309-421 (577)
360 COG3629 DnrI DNA-binding trans 75.4 13 0.00027 35.9 7.7 60 87-146 156-216 (280)
361 KOG1839 Uncharacterized protei 74.3 17 0.00037 41.7 9.4 100 82-181 930-1045(1236)
362 PF13041 PPR_2: PPR repeat fam 73.3 13 0.00029 25.1 5.6 37 87-123 6-44 (50)
363 PF12854 PPR_1: PPR repeat 72.6 9.3 0.0002 23.9 4.2 27 115-141 5-31 (34)
364 KOG1914 mRNA cleavage and poly 71.9 52 0.0011 34.6 11.4 71 72-145 10-81 (656)
365 PF11817 Foie-gras_1: Foie gra 71.8 24 0.00053 33.2 8.8 28 154-181 181-208 (247)
366 COG5159 RPN6 26S proteasome re 70.1 47 0.001 32.1 9.9 47 132-178 100-152 (421)
367 PF14863 Alkyl_sulf_dimr: Alky 69.5 22 0.00047 30.6 7.1 50 117-166 70-119 (141)
368 PF12926 MOZART2: Mitotic-spin 68.4 11 0.00023 29.4 4.4 43 348-392 34-76 (88)
369 COG2909 MalT ATP-dependent tra 68.1 64 0.0014 35.8 11.7 117 60-176 427-564 (894)
370 KOG4014 Uncharacterized conser 67.9 92 0.002 28.2 10.7 95 63-163 50-156 (248)
371 KOG2581 26S proteasome regulat 67.2 59 0.0013 33.0 10.4 55 62-116 223-279 (493)
372 PF11846 DUF3366: Domain of un 67.2 30 0.00065 31.1 8.1 51 133-184 127-177 (193)
373 PHA02537 M terminase endonucle 67.1 34 0.00073 32.0 8.3 117 60-196 95-222 (230)
374 KOG3783 Uncharacterized conser 66.8 50 0.0011 34.6 10.2 78 68-147 253-333 (546)
375 PF04053 Coatomer_WDAD: Coatom 66.6 54 0.0012 33.9 10.6 24 87-110 350-373 (443)
376 cd02683 MIT_1 MIT: domain cont 66.6 28 0.0006 26.5 6.4 38 168-205 30-67 (77)
377 KOG3807 Predicted membrane pro 66.4 1E+02 0.0023 30.4 11.6 93 88-182 188-306 (556)
378 KOG2041 WD40 repeat protein [G 66.1 34 0.00074 37.0 8.9 105 61-188 747-855 (1189)
379 PF10345 Cohesin_load: Cohesin 65.7 43 0.00094 36.1 10.2 95 84-178 301-431 (608)
380 PF09205 DUF1955: Domain of un 65.5 50 0.0011 28.3 8.1 60 120-179 88-148 (161)
381 smart00386 HAT HAT (Half-A-TPR 65.1 16 0.00036 21.5 4.2 28 165-192 1-28 (33)
382 COG4649 Uncharacterized protei 64.3 98 0.0021 27.8 10.1 101 60-163 106-212 (221)
383 smart00745 MIT Microtubule Int 63.4 21 0.00045 26.8 5.3 37 169-205 33-69 (77)
384 COG4455 ImpE Protein of avirul 63.2 41 0.00088 31.3 7.8 60 92-151 9-69 (273)
385 PF04212 MIT: MIT (microtubule 63.2 14 0.0003 27.2 4.2 26 87-112 8-33 (69)
386 PF11846 DUF3366: Domain of un 63.1 24 0.00051 31.8 6.6 49 100-148 127-175 (193)
387 PF14863 Alkyl_sulf_dimr: Alky 62.4 46 0.001 28.6 7.8 51 150-200 69-119 (141)
388 KOG0985 Vesicle coat protein c 62.4 1.2E+02 0.0026 34.6 12.3 98 78-185 1191-1313(1666)
389 COG3947 Response regulator con 62.0 26 0.00056 33.9 6.6 55 89-143 284-339 (361)
390 cd02683 MIT_1 MIT: domain cont 61.0 71 0.0015 24.3 8.3 26 87-112 9-34 (77)
391 PHA02593 62 clamp loader small 61.0 45 0.00097 30.0 7.5 65 331-395 94-159 (191)
392 TIGR03504 FimV_Cterm FimV C-te 60.5 18 0.00038 24.4 3.8 25 121-145 3-27 (44)
393 cd02681 MIT_calpain7_1 MIT: do 59.9 15 0.00033 27.9 3.9 26 87-112 9-34 (76)
394 KOG1258 mRNA processing protei 59.7 1.2E+02 0.0026 32.3 11.5 101 87-187 300-402 (577)
395 KOG3783 Uncharacterized conser 59.1 1E+02 0.0022 32.4 10.7 71 114-184 444-524 (546)
396 PF12739 TRAPPC-Trs85: ER-Golg 59.1 1.1E+02 0.0023 31.4 11.2 99 81-180 206-329 (414)
397 smart00386 HAT HAT (Half-A-TPR 58.4 21 0.00046 21.0 3.8 29 131-159 1-29 (33)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 58.3 83 0.0018 26.3 8.6 77 100-178 42-126 (126)
399 KOG3616 Selective LIM binding 58.1 32 0.0007 37.4 7.1 117 52-177 664-817 (1636)
400 KOG1463 26S proteasome regulat 57.7 1.6E+02 0.0034 29.3 11.2 124 60-183 180-319 (411)
401 PHA02537 M terminase endonucle 57.3 29 0.00062 32.5 6.0 20 95-114 94-113 (230)
402 PF04212 MIT: MIT (microtubule 56.8 28 0.0006 25.6 4.9 43 160-202 14-63 (69)
403 KOG4279 Serine/threonine prote 55.5 94 0.002 34.1 10.0 127 60-188 255-403 (1226)
404 cd02656 MIT MIT: domain contai 54.1 40 0.00086 25.2 5.4 37 169-205 31-67 (75)
405 PF13041 PPR_2: PPR repeat fam 53.3 66 0.0014 21.5 6.6 32 115-146 1-32 (50)
406 TIGR02710 CRISPR-associated pr 52.6 1.9E+02 0.004 29.3 11.3 56 87-142 133-196 (380)
407 PF12854 PPR_1: PPR repeat 52.2 33 0.00072 21.3 4.0 27 150-176 6-32 (34)
408 cd02678 MIT_VPS4 MIT: domain c 50.6 59 0.0013 24.4 5.9 37 169-205 31-67 (75)
409 COG4455 ImpE Protein of avirul 50.4 2.2E+02 0.0047 26.7 12.1 65 60-126 13-81 (273)
410 KOG0890 Protein kinase of the 50.2 3.4E+02 0.0073 34.0 14.3 121 64-185 1645-1789(2382)
411 PF04348 LppC: LppC putative l 49.5 5.5 0.00012 42.2 0.0 96 87-182 27-129 (536)
412 PRK11619 lytic murein transgly 48.5 2E+02 0.0044 31.3 11.7 91 89-179 284-374 (644)
413 KOG3807 Predicted membrane pro 48.1 1.7E+02 0.0037 29.0 9.8 54 118-171 276-331 (556)
414 KOG4151 Myosin assembly protei 48.0 47 0.001 36.3 6.5 102 60-161 65-171 (748)
415 COG3014 Uncharacterized protei 47.8 3E+02 0.0065 27.5 11.5 66 119-184 127-227 (449)
416 smart00745 MIT Microtubule Int 47.5 31 0.00068 25.8 4.0 26 87-112 11-36 (77)
417 cd02684 MIT_2 MIT: domain cont 47.4 30 0.00065 26.2 3.8 26 87-112 9-34 (75)
418 PF03564 DUF1759: Protein of u 47.2 1.1E+02 0.0024 25.8 7.9 76 316-391 6-87 (145)
419 PF03745 DUF309: Domain of unk 46.8 1.1E+02 0.0024 22.2 7.3 51 89-139 4-61 (62)
420 KOG0292 Vesicle coat complex C 46.4 1.3E+02 0.0028 33.7 9.4 67 142-213 1074-1141(1202)
421 KOG2561 Adaptor protein NUB1, 46.1 1.1E+02 0.0024 31.3 8.4 96 85-180 164-296 (568)
422 COG5536 BET4 Protein prenyltra 45.5 84 0.0018 30.3 7.1 132 64-195 90-237 (328)
423 cd02678 MIT_VPS4 MIT: domain c 45.3 36 0.00078 25.6 3.9 26 87-112 9-34 (75)
424 cd02681 MIT_calpain7_1 MIT: do 45.1 85 0.0018 23.8 5.9 15 191-205 54-68 (76)
425 cd02684 MIT_2 MIT: domain cont 44.7 1E+02 0.0023 23.2 6.4 36 170-205 32-67 (75)
426 PF01535 PPR: PPR repeat; Int 44.5 36 0.00079 19.7 3.2 16 126-141 9-24 (31)
427 cd02680 MIT_calpain7_2 MIT: do 43.7 45 0.00097 25.3 4.1 18 163-180 18-35 (75)
428 PF02064 MAS20: MAS20 protein 42.9 63 0.0014 27.0 5.3 31 87-117 66-96 (121)
429 PF10952 DUF2753: Protein of u 42.5 93 0.002 26.2 6.1 27 87-113 4-30 (140)
430 KOG0890 Protein kinase of the 42.4 91 0.002 38.5 8.2 49 127-175 1459-1507(2382)
431 KOG2422 Uncharacterized conser 42.3 4.6E+02 0.01 28.1 12.6 23 161-183 352-374 (665)
432 PF01239 PPTA: Protein prenylt 41.8 65 0.0014 19.3 4.1 27 137-163 3-29 (31)
433 cd02656 MIT MIT: domain contai 41.5 45 0.00097 24.9 4.0 26 87-112 9-34 (75)
434 cd02677 MIT_SNX15 MIT: domain 41.5 1.2E+02 0.0026 22.9 6.2 33 172-204 34-66 (75)
435 KOG0276 Vesicle coat complex C 41.5 2.1E+02 0.0046 30.7 9.8 28 118-145 667-694 (794)
436 KOG1464 COP9 signalosome, subu 41.0 1.4E+02 0.0031 28.7 7.9 54 60-113 39-94 (440)
437 PF04053 Coatomer_WDAD: Coatom 40.0 1.1E+02 0.0023 31.7 7.7 27 117-143 347-373 (443)
438 PF02064 MAS20: MAS20 protein 39.7 84 0.0018 26.2 5.6 38 155-192 67-104 (121)
439 cd02680 MIT_calpain7_2 MIT: do 39.6 46 0.00099 25.3 3.6 25 89-113 11-35 (75)
440 PF09670 Cas_Cas02710: CRISPR- 39.3 2.7E+02 0.0059 28.1 10.4 55 59-113 142-198 (379)
441 smart00671 SEL1 Sel1-like repe 39.3 65 0.0014 19.5 3.9 11 133-143 21-31 (36)
442 cd02677 MIT_SNX15 MIT: domain 38.1 54 0.0012 24.8 3.9 27 87-113 9-35 (75)
443 COG5187 RPN7 26S proteasome re 37.7 3.9E+02 0.0085 26.1 10.2 63 84-146 115-184 (412)
444 TIGR00756 PPR pentatricopeptid 37.2 72 0.0016 18.7 3.9 19 125-143 8-26 (35)
445 PF06957 COPI_C: Coatomer (COP 36.9 4.4E+02 0.0095 27.1 11.2 109 87-199 207-344 (422)
446 PF10952 DUF2753: Protein of u 36.1 1.6E+02 0.0035 24.8 6.5 67 120-186 4-89 (140)
447 cd02679 MIT_spastin MIT: domai 35.9 51 0.0011 25.3 3.4 24 89-112 13-36 (79)
448 PF08238 Sel1: Sel1 repeat; I 35.8 81 0.0018 19.5 4.0 8 135-142 26-33 (39)
449 KOG3192 Mitochondrial J-type c 35.6 2.6E+02 0.0056 24.5 7.9 49 317-367 57-105 (168)
450 PRK15490 Vi polysaccharide bio 35.0 5.1E+02 0.011 27.8 11.7 82 97-183 21-103 (578)
451 smart00299 CLH Clathrin heavy 34.5 2.7E+02 0.0058 23.1 10.3 107 60-194 19-134 (140)
452 KOG1914 mRNA cleavage and poly 33.9 6.1E+02 0.013 27.0 14.3 89 92-180 374-464 (656)
453 COG5107 RNA14 Pre-mRNA 3'-end 33.8 5.7E+02 0.012 26.7 13.3 75 70-146 30-105 (660)
454 cd08803 Death_ank3 Death domai 32.8 30 0.00066 26.8 1.8 68 320-396 13-82 (84)
455 KOG4014 Uncharacterized conser 32.7 3.8E+02 0.0083 24.4 10.5 64 60-128 85-155 (248)
456 PF07219 HemY_N: HemY protein 32.4 2.2E+02 0.0047 22.9 6.9 49 118-166 60-108 (108)
457 COG3014 Uncharacterized protei 32.4 3.1E+02 0.0067 27.4 8.8 28 153-180 127-154 (449)
458 cd02679 MIT_spastin MIT: domai 32.3 82 0.0018 24.1 4.1 15 167-181 5-19 (79)
459 PF10858 DUF2659: Protein of u 31.8 3.7E+02 0.0081 23.9 11.6 123 61-183 70-203 (220)
460 KOG1463 26S proteasome regulat 31.7 2.9E+02 0.0063 27.6 8.5 147 60-206 140-318 (411)
461 PF04190 DUF410: Protein of un 31.7 3.5E+02 0.0076 25.6 9.3 98 60-174 2-113 (260)
462 PF13812 PPR_3: Pentatricopept 31.6 1.1E+02 0.0024 18.0 4.0 20 123-142 7-26 (34)
463 KOG0292 Vesicle coat complex C 31.5 3.8E+02 0.0082 30.3 10.1 30 87-116 994-1023(1202)
464 PF09797 NatB_MDM20: N-acetylt 31.0 3.5E+02 0.0076 26.9 9.7 75 101-175 152-241 (365)
465 COG3084 Uncharacterized protei 30.2 37 0.0008 25.5 1.7 41 359-399 5-46 (88)
466 COG1747 Uncharacterized N-term 30.0 5.6E+02 0.012 27.2 10.5 79 98-178 80-158 (711)
467 PF15469 Sec5: Exocyst complex 29.5 3.4E+02 0.0074 24.0 8.4 22 166-187 154-175 (182)
468 KOG1464 COP9 signalosome, subu 29.2 1.4E+02 0.003 28.8 5.8 49 97-145 40-93 (440)
469 PRK05686 fliG flagellar motor 29.0 2.1E+02 0.0045 28.4 7.5 92 324-416 113-229 (339)
470 PF03448 MgtE_N: MgtE intracel 28.6 50 0.0011 25.9 2.5 80 321-410 18-97 (102)
471 PF03392 OS-D: Insect pheromon 28.4 61 0.0013 25.8 2.9 34 397-436 54-87 (95)
472 PF12753 Nro1: Nuclear pore co 28.2 73 0.0016 32.2 4.0 33 133-167 334-366 (404)
473 KOG4563 Cell cycle-regulated h 28.0 96 0.0021 31.0 4.7 53 85-137 42-103 (400)
474 KOG1811 Predicted Zn2+-binding 27.6 4.7E+02 0.01 28.2 9.7 55 127-184 566-620 (1141)
475 KOG1920 IkappaB kinase complex 26.8 2.9E+02 0.0064 32.0 8.6 17 92-108 960-976 (1265)
476 KOG0276 Vesicle coat complex C 26.6 3.3E+02 0.0073 29.3 8.4 47 128-179 648-694 (794)
477 COG1747 Uncharacterized N-term 26.3 8.1E+02 0.018 26.0 13.0 107 87-195 102-249 (711)
478 KOG2997 F-box protein FBX9 [Ge 25.7 1.1E+02 0.0024 30.0 4.6 44 78-121 13-57 (366)
479 PF05053 Menin: Menin; InterP 25.6 6.1E+02 0.013 27.1 10.1 79 88-178 261-345 (618)
480 PF06580 His_kinase: Histidine 25.6 89 0.0019 23.9 3.3 45 349-393 3-47 (82)
481 KOG2422 Uncharacterized conser 25.3 8.7E+02 0.019 26.1 14.8 117 60-176 250-403 (665)
482 PF06288 DUF1040: Protein of u 25.2 32 0.0007 26.4 0.7 45 358-402 4-49 (86)
483 PF07219 HemY_N: HemY protein 25.2 3.2E+02 0.0069 21.9 6.7 49 84-132 59-108 (108)
484 KOG2114 Vacuolar assembly/sort 24.7 3.2E+02 0.0068 30.6 8.1 50 62-113 348-397 (933)
485 PF09205 DUF1955: Domain of un 24.6 4.6E+02 0.0099 22.6 7.9 86 54-146 59-149 (161)
486 KOG2758 Translation initiation 24.5 2.7E+02 0.0058 27.6 6.9 74 70-146 117-196 (432)
487 TIGR00985 3a0801s04tom mitocho 24.3 1.6E+02 0.0035 25.5 4.9 31 87-117 93-124 (148)
488 PF08311 Mad3_BUB1_I: Mad3/BUB 23.4 4.3E+02 0.0094 21.9 9.9 43 102-144 81-126 (126)
489 PF13226 DUF4034: Domain of un 22.9 4.8E+02 0.01 25.2 8.3 33 167-199 115-147 (277)
490 PRK01356 hscB co-chaperone Hsc 22.7 1.7E+02 0.0037 25.8 5.0 47 320-367 52-99 (166)
491 PF09797 NatB_MDM20: N-acetylt 22.5 7.7E+02 0.017 24.4 10.4 43 100-142 199-242 (365)
492 PF08625 Utp13: Utp13 specific 22.3 98 0.0021 26.6 3.2 44 317-367 65-112 (141)
493 TIGR00985 3a0801s04tom mitocho 22.2 1.9E+02 0.0041 25.1 4.9 38 155-192 94-132 (148)
494 PF02184 HAT: HAT (Half-A-TPR) 22.1 1.5E+02 0.0032 18.6 3.1 18 100-117 3-20 (32)
495 KOG0687 26S proteasome regulat 21.8 8E+02 0.017 24.4 10.6 28 117-144 104-131 (393)
496 PF13934 ELYS: Nuclear pore co 21.6 6.5E+02 0.014 23.3 9.8 100 66-176 64-165 (226)
497 COG5466 Predicted small metal- 21.6 1.6E+02 0.0035 21.1 3.6 35 399-433 21-55 (59)
498 COG5187 RPN7 26S proteasome re 21.3 7.9E+02 0.017 24.1 11.6 83 100-182 91-186 (412)
499 KOG0889 Histone acetyltransfer 21.0 1.8E+02 0.0039 37.6 6.1 67 117-183 2812-2886(3550)
500 KOG3677 RNA polymerase I-assoc 20.8 1.8E+02 0.0039 29.7 5.1 87 94-184 245-340 (525)
No 1
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.97 E-value=7.2e-31 Score=246.21 Aligned_cols=407 Identities=26% Similarity=0.397 Sum_probs=256.6
Q ss_pred CchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhc--CC
Q 013696 1 MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLM--NE 78 (438)
Q Consensus 1 ~~~~~r~~~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~--~~ 78 (438)
+|+|+|+|++++|+|++||++||..|+.++.+|++++....+...+-.. .++.. ..|++.+.-.-++.-+. .-
T Consensus 10 lq~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~-~FR~~----ksGK~~~ssKK~Rs~I~~~dL 84 (536)
T KOG4648|consen 10 LQRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRS-HFRTD----KSGKESPSSKKARSPIEKQDL 84 (536)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhh-hcccC----CCCCcCcchhhhhcchhhccC
Confidence 4899999999999999999999999999999999997554444333211 22211 22333333333332222 00
Q ss_pred CCCh-------hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696 79 ESTP-------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (438)
Q Consensus 79 p~~~-------~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~ 150 (438)
+-+. .+.-++..|+.||++|+|++||.||.+++.++|. +..+.|+|++|+++++|..|+.+|..|+.+|..+
T Consensus 85 ~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 85 PVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred CccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 1111 1112589999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhchhhhh----h---hh--ccC-----
Q 013696 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL----E---KY--GKS----- 216 (438)
Q Consensus 151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~~~~~~----~---~~--~~~----- 216 (438)
.+||.|+|.++..+|+..+|..+++.+|+|.|.+.+....+..+....++.|..+...-. + .. .+.
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~F 244 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKF 244 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhh
Confidence 999999999999999999999999999999999999988888877777766655433110 0 00 000
Q ss_pred -Cccc-cCc---cccccccc---cccCCc-cccCcc---ch--hhhcccc-------------ccccc----c---ccC-
Q 013696 217 -GMKV-NGH---EVRAVRNT---IQKTGV-AEIQDL---TI--SKKTENK-------------NLRDE----S---KTE- 261 (438)
Q Consensus 217 -~~~~-~~~---~v~~v~~~---~~~~~~-~~~~~~---~~--~~~~~~~-------------~~~~~----~---~~~- 261 (438)
.... ..+ .++|+... .+.+.. +.+... .. .+.+..+ ++.+. + ++.
T Consensus 245 sk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~ 324 (536)
T KOG4648|consen 245 SKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTK 324 (536)
T ss_pred hhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcch
Confidence 0000 000 01111100 000000 000000 00 0000000 00000 0 000
Q ss_pred ------CC-CCCCC-------CCccccc---------Cccc--c------cccccc------cccchhhHHHhhhhhhHH
Q 013696 262 ------GQ-RDGSG-------ANATHIS---------GLDK--R------NHRTKK------AVLDASVQELATRATSRA 304 (438)
Q Consensus 262 ------~~-~~~~~-------~~~~~~~---------~~~~--~------~~~~~~------~~~~~~~~~~~~~~~~~~ 304 (438)
.+ ...++ .++++.+ ...+ . .+++.+ ..+.....+++......+
T Consensus 325 ~T~~~~~P~~~~~~~~~sr~~~~ii~~~~~~~~~~~~~~~~~~V~~i~~~~~PP~~~i~~~~~~N~iQT~~i~~sss~~A 404 (536)
T KOG4648|consen 325 QTAVKVAPAVETPKETETRKDTKIVPESDNEAKPSAPKKTAVEVPKVQTQVSPPKTTIERSPEVNTVQTEKIEQASSNNA 404 (536)
T ss_pred hheeeeccccccchhhhhhhccccccccccccccCCccccccccCCCCCCCCCCcceeEecCCcceeeeeeccccccccC
Confidence 00 00000 0000000 0000 0 000000 000000011111111111
Q ss_pred HHHhc---cCCCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc-HHHHHH
Q 013696 305 VAEAA---KNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE-VDLAIK 380 (438)
Q Consensus 305 ~~~~~---~~~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~-~~~~~~ 380 (438)
|...+ -.+.+|+...+|-..|..+.+ |. +|+||+.++-.++.+|.......+.|.+.++..+.+++++ +.-...
T Consensus 405 ~~~~PI~~~~~~A~T~T~~~~~s~~~~~~-P~-r~~~LK~~EV~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~K~~~~A~ 482 (536)
T KOG4648|consen 405 MSPSPIERFLPPAPTSTAQFHVTWKELSG-PQ-KYQYLKSIEVPNLCKILGAGFDSDTFADLLRTIHDFFVPNKEPNTAA 482 (536)
T ss_pred CCCCchhhhCCCCCCccchhcccHhhhcc-ch-hhhheeeeeccchhhhcccccchHHHHHHHhhhccccccCCCCccce
Confidence 11111 235689999999999999977 33 9999999999999999999999999999999999999854 333455
Q ss_pred HHHHhccCCchhHHHhhcChhhHHHHHHHHHHhh
Q 013696 381 YLEYLTMVPRFDLVIMCLSLADKADLRKVWDETF 414 (438)
Q Consensus 381 ~L~~l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~ 414 (438)
.|.-.++..-|.+..||++-.++..|.-++..+.
T Consensus 483 ~~L~~~~~~~F~i~s~~~~~~~~~~~~~~~~~~~ 516 (536)
T KOG4648|consen 483 VLLEISKNDEFTILAMLMSAEEKKMVSSILNAIK 516 (536)
T ss_pred eeeccCCCchhhHHHHHHhhhccccHHHHHHhhc
Confidence 6667889999999999999999999988777654
No 2
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=99.94 E-value=9.8e-27 Score=187.29 Aligned_cols=93 Identities=38% Similarity=0.670 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcc-ccHHHHHHHHHHhccCCc
Q 013696 312 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT-GEVDLAIKYLEYLTMVPR 390 (438)
Q Consensus 312 ~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~-~~~~~~~~~L~~l~~~~R 390 (438)
|++|+|++||+++||+++++++.+|+||+.|+|+.||+||+++|++++|++||.+|++++. .|+..|+++|++|++++|
T Consensus 1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~R 80 (94)
T PF13877_consen 1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKR 80 (94)
T ss_pred CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999999999999999999999999998887 688999999999999999
Q ss_pred hhHHHhhcChhhHH
Q 013696 391 FDLVIMCLSLADKA 404 (438)
Q Consensus 391 F~~~~~~ls~~ek~ 404 (438)
|+|++|||+++||+
T Consensus 81 F~l~~~fl~~~eK~ 94 (94)
T PF13877_consen 81 FDLAVMFLSSSEKK 94 (94)
T ss_pred HHHHHHhcCHhhCC
Confidence 99999999999985
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-18 Score=173.81 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=125.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE 89 (438)
Q Consensus 11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~ 89 (438)
.|++.++++..+.+++..+.+++...+ +....+..++..| .+|..+-||..|+++|...|+.+++ +.+
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrp---------n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~N 325 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRP---------NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNN 325 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCC---------cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhH
Confidence 467777888888888888777775443 3344566677776 7888888888888888888888777 557
Q ss_pred HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696 90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (438)
Q Consensus 90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~ 168 (438)
+|+++-..|+..+|+.||.+|+.+.|+ +.+.+|+|.+|..+|.+++|...|.+++...|..+.++.++|.+|..+|+++
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 777777777777777777777777776 6666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696 169 ESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 169 eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~ 206 (438)
+|+.+|+.++++.|...++ .+....|...|.++|..++
T Consensus 406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 6666666666666665554 3444555555555555544
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-19 Score=179.02 Aligned_cols=185 Identities=24% Similarity=0.284 Sum_probs=160.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696 10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK 88 (438)
Q Consensus 10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~ 88 (438)
-++++.+++.+..+++-..+.+++..++ .-..++..+|..| .+|+...||.+|.+++.++|+..++ |.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp---------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA--Yi 256 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQP---------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA--YI 256 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCC---------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH--Hh
Confidence 3567788888888888888888888775 3456778899888 8899999999999999999999999 67
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
++|++|-..+.|+.|+.||.+|+.+.|+ +.++.|+|.+|..+|..+-|+..|++||.+.|+.+.||.++|.++...|+.
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696 168 KESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~ 205 (438)
.+|..+|.++|.+.|..+++ ++.+++|..+|.++++..
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 99999999999999988877 344556666666666544
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=163.02 Aligned_cols=119 Identities=42% Similarity=0.614 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 81 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 81 ~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
...+..++..|+-+++.++|.+|+..|++||+++|. +..|+|+|.+|.++|.|+.|+++|+.||.+||.+.++|.|+|.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 345677999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
+|..+|+|.+|++.|+++|.|+|+|...+..|.-|...++
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988888887776554
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=5.5e-16 Score=134.88 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=120.5
Q ss_pred hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
-..+|++++.++|++ +..+|..++..|+|++|+.+|.+++.++|. ..+|.++|.++..+|++++|+..|.+++.
T Consensus 12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 357899999999864 447899999999999999999999999999 99999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888887776654
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.68 E-value=5.8e-16 Score=165.97 Aligned_cols=178 Identities=11% Similarity=0.156 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696 20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK 98 (438)
Q Consensus 20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g 98 (438)
+.|+++++...+.+.... ..+.....+..+|..| ..|++++|+..|++++.++|....+ +..+|.++...|
T Consensus 308 ~~y~~A~~~~~~al~~~~------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g 379 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELG 379 (615)
T ss_pred hhHHHHHHHHHHHHhcCC------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCC
Confidence 567788877777775431 1122233445566666 8899999999999999999998887 679999999999
Q ss_pred cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
+|++|+.+|.++++++|+ +.+|+++|.+|+.+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|+++
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696 178 LRLEPQNQEIK----------KQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 178 l~l~P~~~~~~----------~~l~~a~~~~~ka~~~~ 205 (438)
+.+.|.++.++ +++.+|+..|.+++.+.
T Consensus 460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 99999998773 44566666666666544
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.2e-16 Score=162.44 Aligned_cols=194 Identities=24% Similarity=0.246 Sum_probs=159.9
Q ss_pred HHHHHHHHHhHH---------HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCC
Q 013696 9 ALDFQGFLNDLQ---------DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE 78 (438)
Q Consensus 9 ~~~l~~~~~~l~---------~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~ 78 (438)
+..+.+.++.++ .|++++....+-..+. .+....+..+|.+| .+++|++|..+|+.+-..+
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~---------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHH---------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555544 5666666555522222 22334557788887 9999999999997775554
Q ss_pred C----------------------------------CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696 79 E----------------------------------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR 123 (438)
Q Consensus 79 p----------------------------------~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l 123 (438)
| +.++. |..+||||--+++++.||++|.+|++++|. +.+|..+
T Consensus 384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes--Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLl 461 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES--WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLL 461 (638)
T ss_pred cccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH--HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhc
Confidence 4 33455 889999999999999999999999999998 9999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHH
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE 193 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~ 193 (438)
|.=+.....|+.|..+|+.||.++|++..|||.+|.+|.++++++.|.-.|++|+.++|.+..+ .+..++
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999765 677889
Q ss_pred HHHHHHHHHhhchhhhhhhh
Q 013696 194 VKSLYEKEVFQKASKTLEKY 213 (438)
Q Consensus 194 a~~~~~ka~~~~~~~~~~~~ 213 (438)
|+.+|++|+.+++.++..+.
T Consensus 542 AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred HHHHHHHHHhcCCCCchhHH
Confidence 99999999998877665433
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=1.4e-15 Score=163.01 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=153.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696 13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG 91 (438)
Q Consensus 13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g 91 (438)
+.+...+++|++++....+.+...+ .....+..+|..| ..|++++|+..|++++..+|+++.+ ++.+|
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P---------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~lg 406 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDP---------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI--YYHRA 406 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHH
Confidence 3444456678888888777776543 1112334455555 8899999999999999999999888 77999
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA 170 (438)
.+++..|+|++|+.+|.+++.++|+ ..++.++|.++..+|++++|+..|++++..+|+++.+++.+|.++..+|++++|
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHHHHHHhhc
Q 013696 171 IEDSEFALRLEPQNQEI-----------------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 171 ~~~~~~al~l~P~~~~~-----------------~~~l~~a~~~~~ka~~~~ 205 (438)
+..|++++.++|.+... .+++.+|...|++++.++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999975321 256667777777776654
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-15 Score=149.20 Aligned_cols=147 Identities=28% Similarity=0.428 Sum_probs=131.0
Q ss_pred CCCCCCcC-cCCCccchHHHHHhhhcCCCC--C----------------------hhHHHHHHHHHHHHHhccHHHHHHH
Q 013696 52 KKPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGNECFKQKKFKEAIDC 106 (438)
Q Consensus 52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~--~----------------------~~a~~~~~~g~~~~~~g~y~~Ai~~ 106 (438)
+.++|.+| ..++++.|+.+|.+++...-. . ..+...+..|+.+|+.|+|..|+.+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 35688888 789999999999998874422 1 0122267889999999999999999
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 107 y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
|+++|..+|+ +.+|.|||.||.+++.+..|+.+|..+++++|++.++|+|.|.++..+.+|+.|.+.|++++.++|.+.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013696 186 EIKKQLAEVKSLY 198 (438)
Q Consensus 186 ~~~~~l~~a~~~~ 198 (438)
++...+.++....
T Consensus 461 e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877777644
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.4e-15 Score=154.68 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=139.8
Q ss_pred ccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696 46 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR 123 (438)
Q Consensus 46 ~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l 123 (438)
+..+..+-.+|.+| .+++++.|+.+|.++++++|++..+ |-.+|.-+.....|+.|..+|+.||.++|. ..+|+.+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa--yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA--YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh--hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 44455778899999 7789999999999999999998888 459999999999999999999999999999 9999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHH
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE 193 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~ 193 (438)
|++|+++++++.|+-+|++|+.++|.+.....-+|..+.++|+.++|+..|++|+.++|.++-. .+.+.+
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999755 345555
Q ss_pred HHHHHHHHH
Q 013696 194 VKSLYEKEV 202 (438)
Q Consensus 194 a~~~~~ka~ 202 (438)
|+..+++..
T Consensus 576 al~~LEeLk 584 (638)
T KOG1126|consen 576 ALQELEELK 584 (638)
T ss_pred HHHHHHHHH
Confidence 555555433
No 12
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.1e-15 Score=141.72 Aligned_cols=142 Identities=34% Similarity=0.583 Sum_probs=128.3
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhH----------HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANR 123 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a----------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~l 123 (438)
|..++.+.|+.+|.++|.++|+...+ ..++..|+..++.|+|..|.++|+.+|.++|+ +.+|.|+
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 58889999999999999999987542 33789999999999999999999999999998 7789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka 201 (438)
|.+...+|+..+|+.+|..|+.+|+.+.++|.++|.|+..+++|++|+++|++|+++..+ .+....+.+|...+.++
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987 66666666666655543
No 13
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.59 E-value=2.8e-14 Score=135.01 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=89.9
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l 130 (438)
+..|..| .+|+|++||.+|.+++..+|.++.. +.+++.+|++.++|..|...++.|+.++.. ..+|..+|.+-..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4556666 9999999999999999999999888 559999999999999999999999999988 99999999999999
Q ss_pred cCHHHHHHHHHHHhhcCCccH
Q 013696 131 RRFQEAEDDCTEALNLDDRYI 151 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~ 151 (438)
|+..+|.++|+.+|.+.|.+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 999999999999999999764
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=6.8e-14 Score=119.82 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=115.8
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696 69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (438)
Q Consensus 69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~ 147 (438)
+.|.+++..+|++..+ ...+|..++..|+|++|+..|++++..+|. +.++.++|.++..+|++++|+..+.+++.++
T Consensus 4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999999998777 669999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
|+++..++.+|.++...|++++|+..|+++++++|++.....-...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876544444443
No 15
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=9.2e-14 Score=127.38 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=117.1
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHH-HHhcC--HHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQEA 136 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~-~~l~~--~~eA 136 (438)
.++.++++..+.+++..+|++..+ |..+|.+|...|++++|+.+|.++++++|+ +.++.++|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566789999999999999999998 779999999999999999999999999999 99999999985 67787 5999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
...+++++.++|+++.+++.+|.++..+|+|++|+.+|+++++++|.+..-
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999999999999999999999999999887544
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-13 Score=133.73 Aligned_cols=118 Identities=35% Similarity=0.496 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~ 147 (438)
+...+..|+.||+.|+|..|+..|.+|+..-.. ..++.|++.||+++++|..|+..|.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 444789999999999999999999999886331 3679999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (438)
Q Consensus 148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka 201 (438)
|+|++|+||+|.++..+|+|+.|+.+|++|++++|.|..+..++..+...+.+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877776655543
No 17
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=121.80 Aligned_cols=107 Identities=36% Similarity=0.616 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (438)
Q Consensus 83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~ 156 (438)
.+..++..|+-+|+.|+|++|...|..||.+.|. ..+|.|+|.|+++++.++.|+.+|.+||+++|.+.+|+.|
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 3555889999999999999999999999999987 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696 157 RATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (438)
Q Consensus 157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 189 (438)
+|.+|.++.+|++|+++|.+++.++|...++..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999876643
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.53 E-value=2.7e-13 Score=132.29 Aligned_cols=125 Identities=21% Similarity=0.169 Sum_probs=115.0
Q ss_pred CCCccchHHHHHhhhcCCCCCh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
.+..+.++..+.++|...+.++ .+..++.+|.+|...|++++|+..|.++++++|+ +.+|+++|.+|..+|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567889999999997544332 2445889999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
..|+++++++|++..+|+++|.++...|++++|+.+|+++++++|+++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999999997
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=4.4e-13 Score=123.52 Aligned_cols=167 Identities=18% Similarity=0.119 Sum_probs=137.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696 12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL 90 (438)
Q Consensus 12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~ 90 (438)
+...+-..+++++++....+.+...+ .....+..+|..| ..|++++|+..|.+++...|.+..+ +..+
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~ 105 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDP---------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV--LNNY 105 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHH
Confidence 34444556677787777777765543 1112334455556 7899999999999999999888777 6699
Q ss_pred HHHHHHhccHHHHHHHHHHHhccC--CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
|.+++..|++++|+..|.+++... +. ...+.++|.++...|++++|+..|.+++..+|+++.++..+|.++...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999999864 33 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q 013696 168 KESIEDSEFALRLEPQNQEIKK 189 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~~~ 189 (438)
++|+..+++++.+.|.++..+.
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999888766643
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.3e-13 Score=133.35 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=126.0
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
+|+-| -.++.++|+.+|+++|+++|+...+ |-.+|.-|..+++...|+.+|++|++++|. -.+|+.+|++|-.++.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 44445 4578999999999999999999988 559999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 194 (438)
..=|+-+|++|+.+.|+++..|..+|.||.++++.++|+.+|.+|+...-.+..+...++++
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877764444433
No 21
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=3.4e-13 Score=134.70 Aligned_cols=113 Identities=32% Similarity=0.457 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
+...|..++..|+|++|+.+|.++|+++|+ +.+|+++|.+|+.+|+|++|+.++++++.++|+++.+|+++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 568899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
+|++|+.+|++++.++|++..+...+..+...+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877776664
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=2.5e-13 Score=150.46 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=110.3
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
.|++++|+..|++++..+|+ ..+ +..+|.++.+.|++++|+.+|.+++.++|+ +.++.++|.++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 48899999999999988885 555 678899999999999999999999999998 88899999999999999999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
|.+++.++|+++.+++++|.++..+|++++|+.+|++++.++|++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 9999999999999999999999999999999999999999999887773
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=5.6e-13 Score=130.06 Aligned_cols=125 Identities=19% Similarity=0.106 Sum_probs=105.5
Q ss_pred CCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Q 013696 52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129 (438)
Q Consensus 52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~ 129 (438)
+...|..| ..|++++|+..|.+++.++|+++.+ ++.+|..+...|+|++|+..|.++++++|+ ..+|.++|.++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44556666 8899999999999999999999888 779999999999999999999999999999 9999999999999
Q ss_pred hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
.|++++|+.+|++++.++|+++.....+ ..+...+++++|+..|.+++.
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence 9999999999999999999987322111 123345677777777765543
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=2.1e-13 Score=144.23 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=118.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..+++.+|+..+++++.++|+++.+ +..+|.++...|++++|+.+|+++++++|+ +.+++++|.++...|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456899999999999999999988 669999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIKKQL 191 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~l 191 (438)
.+++++.++|.++.+++.++.++...|++++|+..+++++..+ |+++.++..+
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l 447 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ 447 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 9999999999999888888888888999999999999999886 7777654333
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=3.5e-13 Score=142.60 Aligned_cols=141 Identities=9% Similarity=-0.010 Sum_probs=122.9
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~---------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l 130 (438)
.+.+++|+.+|++++.++|++..+ +..+|.++... +++++|+..++++++++|+ +.++..+|.++...
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 356789999999999999999887 55888887644 4489999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEK 200 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~k 200 (438)
|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|+++++++|.++... +.+++|...+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986542 334555555555
Q ss_pred HHh
Q 013696 201 EVF 203 (438)
Q Consensus 201 a~~ 203 (438)
++.
T Consensus 432 ~l~ 434 (553)
T PRK12370 432 LRS 434 (553)
T ss_pred HHH
Confidence 443
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=6.8e-13 Score=122.23 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=121.3
Q ss_pred CCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 131 (438)
Q Consensus 54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~ 131 (438)
.+|..| ..|++++|+..+.+++..+|.+..+ +..+|.+++..|++++|+..|.+++...|. ..++.++|.++...|
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA--YLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 344455 7899999999999999999988877 669999999999999999999999999998 889999999999999
Q ss_pred CHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 132 RFQEAEDDCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 132 ~~~eA~~~~~~al~l~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
++++|+..|.+++... +.....++.+|.++...|++++|...|.+++..+|.+..++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence 9999999999999864 45678899999999999999999999999999999987764
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=8e-13 Score=146.50 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=137.7
Q ss_pred CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHH
Q 013696 56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~ 134 (438)
|..+ ..|++++|+.+|.+++..+|..... +..++..+...|++++|+.+|.++++++|++.++.++|.++.++|+++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHH
Confidence 3444 7899999999999999999887665 446677777789999999999999999999888999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhh
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ 204 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~ 204 (438)
+|+..|.+++.++|+++.+++++|.++...|++++|+..|+++++++|+++.+ .+++.+|...|++++.+
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999987 46677888999999998
Q ss_pred chhhh
Q 013696 205 KASKT 209 (438)
Q Consensus 205 ~~~~~ 209 (438)
.+...
T Consensus 707 ~P~~a 711 (987)
T PRK09782 707 IDNQA 711 (987)
T ss_pred CCCCc
Confidence 87653
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=5.3e-13 Score=143.78 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=128.8
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHH----HHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~----Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~ 134 (438)
..|++++|+..|.+++..+|++..+ +..+|..++..|++++ |+..|++++.++|+ +.++.++|.++...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 6789999999999999999988777 6689999999999986 89999999999998 889999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhh
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ 204 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~ 204 (438)
+|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++... .++.++|...|.+++..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987543 34667888888888777
Q ss_pred chhh
Q 013696 205 KASK 208 (438)
Q Consensus 205 ~~~~ 208 (438)
.+..
T Consensus 382 ~P~~ 385 (656)
T PRK15174 382 RASH 385 (656)
T ss_pred Chhh
Confidence 6543
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.46 E-value=9.5e-13 Score=141.79 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=146.7
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccc----hHHHHHhhhcCCCCChhHHHHHHHH
Q 013696 17 NDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYD----PVSHISSSLMNEESTPDATSEKELG 91 (438)
Q Consensus 17 ~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~e----Ai~~~~~al~~~p~~~~a~~~~~~g 91 (438)
..++++++++....+.+...+ ........+|..| ..|++++ |+..|++++..+|++..+ +..+|
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p---------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--~~~lg 291 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGL---------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--VTLYA 291 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH--HHHHH
Confidence 344556666655555554332 1222334456666 7889886 899999999999998887 66999
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA 170 (438)
..+...|++++|+.+|++++.++|+ +.++.++|.+|...|++++|+..|.+++..+|+++.++..+|.++..+|++++|
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999 889999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 171 IEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 171 ~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
+..|+++++++|++. ...+.+|...|.+++...
T Consensus 372 ~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 372 ESVFEHYIQARASHL--PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHhChhhc--hhhHHHHHHHHHHHHHhc
Confidence 999999999999875 445567888888777654
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=4e-13 Score=121.47 Aligned_cols=130 Identities=18% Similarity=0.121 Sum_probs=121.0
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
+|..| ..|++..|...++++|+++|++..+ |..++..|.+.|+.+.|-+.|++|+.++|+ ..++.|.|.-++.+|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 44456 8999999999999999999999999 559999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 133 FQEAEDDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
|++|...|++|+. +|. -+..|-++|.|-.+.|+++.|..+|+++|+++|+++..
T Consensus 119 ~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 119 PEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred hHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 9999999999996 454 46789999999999999999999999999999999876
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=2.2e-12 Score=111.61 Aligned_cols=112 Identities=10% Similarity=-0.026 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.+.+|..++..|++++|...|+-+..++|. ...|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|.|+..+|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 789999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
+.+.|...|+.++.+.-.+++-..-..+|...+
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 999999999999999865554444444454444
No 32
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=5.6e-13 Score=115.94 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=99.4
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|++++|+..|.+++..+|.+..+ +..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.|+..+|++++|+.
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999999999888 779999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.|.+++.++|+++.++.++|.+...++
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999998876543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-12 Score=128.94 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=143.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696 12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL 90 (438)
Q Consensus 12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~ 90 (438)
+++|+.-..+=|+++.....+++-.+ +-..++.-+|-.| .+.+...|++.|++|+.++|.+..+ |+.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp---------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA--WYGL 404 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP---------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA--WYGL 404 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc---------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH--Hhhh
Confidence 45677777777888888888886553 2334667788888 8999999999999999999998888 8899
Q ss_pred HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e 169 (438)
|..|--++-..-|+-+|++|+.+.|+ ...|..+|.||.++++.++|+++|.+|+.....+..++.++|.+|.+++++++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 013696 170 SIEDSEFALRLE 181 (438)
Q Consensus 170 A~~~~~~al~l~ 181 (438)
|..+|++.+...
T Consensus 485 Aa~~yek~v~~~ 496 (559)
T KOG1155|consen 485 AAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999999844
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.41 E-value=3.1e-12 Score=146.40 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=54.4
Q ss_pred CCCCcC-cCCCccchHHHHHhhhcCCCCChhH------------HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH
Q 013696 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDA------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA 119 (438)
Q Consensus 54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a------------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~ 119 (438)
.+|..| ..|++++|+.+|++++..+|++... +....+|..+...|++++|+.+|+++++++|. +.+
T Consensus 308 ~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a 387 (1157)
T PRK11447 308 ALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYA 387 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344444 5555555555555555555544321 01123355555555555555555555555555 555
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~ 155 (438)
+.++|.+|...|++++|+..|++++.++|++..++.
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555555555555555555554443
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=3.1e-12 Score=115.73 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696 20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK 98 (438)
Q Consensus 20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g 98 (438)
++...+-+..+++|++.+... ..+..++..| ..|..+-|-+.|++++.++|++.++ +++.|..++.+|
T Consensus 49 gd~~~A~~nlekAL~~DPs~~---------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg 117 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYY---------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQG 117 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCC
Confidence 455666667788887775111 1233344456 8899999999999999999999999 889999999999
Q ss_pred cHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696 99 KFKEAIDCYSRSIAL--SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~--~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~ 175 (438)
+|++|...|.+|+.. .+. +..|.|+|.|.++.|+++.|..+|++++.++|+++.+..-++..++..|+|-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999983 233 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHH
Q 013696 176 FALRLEPQNQEI 187 (438)
Q Consensus 176 ~al~l~P~~~~~ 187 (438)
+...-.+...+.
T Consensus 198 ~~~~~~~~~A~s 209 (250)
T COG3063 198 RYQQRGGAQAES 209 (250)
T ss_pred HHHhcccccHHH
Confidence 988777655554
No 36
>PLN02789 farnesyltranstransferase
Probab=99.39 E-value=1.1e-11 Score=121.60 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=124.4
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH--HH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF--QE 135 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~--~e 135 (438)
..+.+++|+..+.++|.++|.+..+ |..+|.++...| ++++|+.++.+++..+|. ..+|.+++.++.++++. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4578899999999999999999998 779999999998 689999999999999999 89999999999999874 78
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
++.++.+++.++|.|..+|..+|.++..+|+|++|++++.++|+++|.|..++....-+..
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999776665543
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.38 E-value=4.5e-12 Score=139.74 Aligned_cols=143 Identities=18% Similarity=0.157 Sum_probs=81.1
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|++++|+..|.+++...|+. .. +..+|.++...|++++|+..+.+++..+|+ ..+++++|.+|..+|++++|+.
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS-QN--AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc-hH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 5555666666666665555544 22 345555556666666666666666555555 5555555666666666666666
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~ 206 (438)
.|++++..+|+++.++.++|.++...|+ .+|+..+++++.+.|+++.. .+++.+|...|++++...+
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666555555566666665555 55666666666555555544 2334445555555555443
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9e-12 Score=123.01 Aligned_cols=151 Identities=16% Similarity=0.188 Sum_probs=140.3
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
.|.-+ -.|++-.|.+.++.+|.++|.+... |..+|..|....+-++-...|.+|..++|. +.+|+.||.+++-+++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 34433 7799999999999999999988887 669999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEV 202 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~ 202 (438)
|++|+.+|++++.++|.++-+|..++.+.+++++++++...|+.+.+--|..++. ++++..|.+.|.+++
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887 678888999999998
Q ss_pred hhchh
Q 013696 203 FQKAS 207 (438)
Q Consensus 203 ~~~~~ 207 (438)
.+.+.
T Consensus 490 ~LE~~ 494 (606)
T KOG0547|consen 490 ELEPR 494 (606)
T ss_pred hhccc
Confidence 88743
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.37 E-value=8.6e-12 Score=125.89 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=66.7
Q ss_pred cCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e 135 (438)
..|++++|+..+.+++...|.... +..+..+|..+...|++++|+.+|.++++.+|+ ..++..+|.+|...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 445555555555555554443321 112334555555555555555555555555555 4555555555555555555
Q ss_pred HHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 136 AEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 136 A~~~~~~al~l~p~~-~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
|+..+.+++..+|.+ ..++..++.+|...|++++|+..+++++.+.|+.
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 555555555555544 2344555555555555555555555555555544
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-12 Score=127.51 Aligned_cols=109 Identities=36% Similarity=0.543 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
++..|+..+..|+|+.|+.+|..+|.++|. ...|.|+..||..+|+|++|+++..++++++|+.+++|.++|.++..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 568899999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 195 (438)
+|++|+..|.+.|+.+|+|..+...+.++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999988888887
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=1e-11 Score=142.17 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=119.7
Q ss_pred CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HH--------------H
Q 013696 56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV--------------A 119 (438)
Q Consensus 56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~--------------~ 119 (438)
|..+ ..|++++|+..|++++..+|++..+ +..+|.+|+..|++++|+.+|+++++++|+ .. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 4444 7899999999999999999999888 679999999999999999999999999987 21 1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 189 (438)
...+|.+++..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2355889999999999999999999999999999999999999999999999999999999999987643
No 42
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=5.7e-12 Score=118.30 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=107.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..++|.+|+..|.+||.++|.++.. |.+++.+|.+.|.|+.|++....||.+||. ..+|..+|.+|+.+|+|++|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVy--ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVY--YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 7789999999999999999999887 569999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLK---ESIEDSEFALRL 180 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~---eA~~~~~~al~l 180 (438)
.|.+||.++|++...+.+|..+...++... .+...++-+..+
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 999999999999999999999998888766 444444444443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.1e-12 Score=123.32 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=139.2
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
++..| ..++-.+-...|..+..++|.+++. |+.+|..++-.++|++|+..|+++++++|. +.+|..++.+.+++++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence 33445 6778888999999999999999999 779999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHH-----------HHHHHHHH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVK 195 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~------~~~~-----------~~~l~~a~ 195 (438)
++++...|+.++...|+.+..|...|.++..+++|+.|++.|.+|+.|.|. +... .+++..|.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999998 3221 57888999
Q ss_pred HHHHHHHhhchhhh
Q 013696 196 SLYEKEVFQKASKT 209 (438)
Q Consensus 196 ~~~~ka~~~~~~~~ 209 (438)
.++.+++++++.-.
T Consensus 524 ~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 524 NLLRKAIELDPKCE 537 (606)
T ss_pred HHHHHHHccCchHH
Confidence 99999999885433
No 44
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=2.1e-11 Score=134.52 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=125.7
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
.|..| ..|++++|+..|++++..+|+...+ +..+|.+++..|+|++|+..+.+++..+|. ..++..+|.++...|+
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Confidence 34444 6788999999999999988887777 668899999999999999999999998887 8888888999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEV 202 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~ 202 (438)
+++|+..|++++.++|+++.+++.+|.++...|++++|...+.++++..|.++.+ .+++.+|...+.+++
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888888877554 355667777777766
Q ss_pred hhchh
Q 013696 203 FQKAS 207 (438)
Q Consensus 203 ~~~~~ 207 (438)
...+.
T Consensus 289 ~~~~~ 293 (899)
T TIGR02917 289 KSAPE 293 (899)
T ss_pred HhCCC
Confidence 65543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.7e-11 Score=123.01 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc
Q 013696 21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK 99 (438)
Q Consensus 21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~ 99 (438)
.-+++|..+..+-+-.+ +-..+.--+|..| ..+++.-|...|.+++.+.|.++-. ++.+|.+.|..+.
T Consensus 361 EhdQAmaaY~tAarl~~---------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv--~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMP---------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV--LHELGVVAYTYEE 429 (611)
T ss_pred hHHHHHHHHHHHHHhcc---------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh--hhhhhheeehHhh
Confidence 44555665555554443 1111222344445 6789999999999999999999988 7799999999999
Q ss_pred HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696 100 FKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
|.+|+.+|..++..-+. ...+.|+|.+|.+++.|++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|+
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 99999999999954322 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 172 EDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
++|.++|.+.|+|.-+..-+..|++
T Consensus 510 d~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 510 DHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999766555554443
No 46
>PLN02789 farnesyltranstransferase
Probab=99.32 E-value=1.7e-11 Score=120.27 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=144.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCC-CccchHHHHHhhhcCCCCChhHHH
Q 013696 9 ALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATS 86 (438)
Q Consensus 9 ~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g-~~~eAi~~~~~al~~~p~~~~a~~ 86 (438)
-.-++..+...+..++++...++.+...+... ..+...+.++ .+| ++.+|+..+++++..+|++..+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y---------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa-- 108 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNY---------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI-- 108 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--
Confidence 34455666667788888888888887664111 1221222223 455 5799999999999999999998
Q ss_pred HHHHHHHHHHhccH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKF--KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (438)
Q Consensus 87 ~~~~g~~~~~~g~y--~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~ 163 (438)
|..+|.++.+.|.+ ++++.++.++++++|. ..+|.++|.++..+|+|++|+.+|.++|+++|.|..+|+.+|.++..
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 77999999888874 7889999999999999 99999999999999999999999999999999999999999999988
Q ss_pred c---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 164 L---GKL----KESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 164 l---g~~----~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
+ |.+ ++++.+..+++.++|+|..++..+.-+..
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 7 434 47888889999999999999877666553
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-11 Score=122.37 Aligned_cols=163 Identities=16% Similarity=0.135 Sum_probs=140.7
Q ss_pred cccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH
Q 013696 45 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN 122 (438)
Q Consensus 45 ~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~ 122 (438)
.|.....+...|.-| ..|++.+|..+|.++..++|....+ |...|..|...|..++|+.+|..|-++.|. ...+..
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa--Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA--WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH--HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 344555566666666 7899999999999999999999888 669999999999999999999999999988 566667
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhcCCccHH-----------------------------------------HHHHHHHHH
Q 013696 123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIK-----------------------------------------AYSRRATAR 161 (438)
Q Consensus 123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~-----------------------------------------a~~~lg~a~ 161 (438)
+|+-|..+++++.|..+|.+|+.+.|.++- .+.++|.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 788888889999999999999888886531 256899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696 162 KELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT 209 (438)
Q Consensus 162 ~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~ 209 (438)
.++++|++|+.+|+++|.+.|.+... .++++.|...|.+++.+++.+.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99999999999999999999999876 7889999999999999987663
No 48
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.8e-11 Score=114.54 Aligned_cols=106 Identities=36% Similarity=0.576 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC---CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (438)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~ 156 (438)
..|..++..||-||+.++|..|+.+|+++|... |+ +.+|+|||.|.+.+|+|..|+.+|.+|+.++|.+.++|+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 457779999999999999999999999999974 55 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 157 RATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
-|.|+..+.++.+|..+++..+.++-....+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999999998887655444
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=5.2e-11 Score=120.18 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=136.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696 12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL 90 (438)
Q Consensus 12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~ 90 (438)
+...+...++|++++......++..+.... ......+..+|..| ..|++++|+..|.+++..+|+...+ +..+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l 220 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA--SILL 220 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH--HHHH
Confidence 344555667788877776665544321100 00011112344444 7899999999999999999987777 6699
Q ss_pred HHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~ 168 (438)
|..+...|++++|+..|.+++..+|. ..++..++.+|...|++++|+..+.+++..+|+...+ ..+|.++...|+++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 99999999999999999999999987 6778899999999999999999999999999987554 89999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHH
Q 013696 169 ESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 169 eA~~~~~~al~l~P~~~~~~ 188 (438)
+|+..|+++++.+|++....
T Consensus 300 ~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 300 AAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHhCcCHHHHH
Confidence 99999999999999987654
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=3.4e-11 Score=113.19 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=115.3
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHH
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMA 126 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~ 126 (438)
...|..| ..|++++|+..|++++..+|.++.. ..++.+|.+++..|++++|+..|.++++.+|+ ..+++.+|.+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 3444444 8899999999999999999987642 24789999999999999999999999999997 3479999999
Q ss_pred HHHh--------cCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 127 YLKL--------RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 127 ~~~l--------~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+... |++++|+..|.+++..+|++..++ +.+|..|...|++.+|+..|++++...
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 9987 889999999999999999986442 467888999999999999999999998
Q ss_pred CCCH
Q 013696 182 PQNQ 185 (438)
Q Consensus 182 P~~~ 185 (438)
|+.+
T Consensus 197 p~~~ 200 (235)
T TIGR03302 197 PDTP 200 (235)
T ss_pred CCCc
Confidence 8764
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=1e-10 Score=125.38 Aligned_cols=131 Identities=8% Similarity=-0.030 Sum_probs=121.3
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l 130 (438)
..++..- ..|.+++|...++.++++.|++..+ ..+++.++.+.+++++|+..+++++..+|+ +.+++.+|.++..+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 3344443 7899999999999999999999999 559999999999999999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
|+|++|+..|++++..+|+++.++..+|.++...|+.++|...|++++.+..+-.
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999999999999999999999999999999885543
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.5e-11 Score=121.30 Aligned_cols=156 Identities=14% Similarity=0.100 Sum_probs=134.8
Q ss_pred ccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------
Q 013696 48 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---------- 116 (438)
Q Consensus 48 ~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---------- 116 (438)
...++..+|... ..++-..||..+.+|++++|++.++ +..+|..|...|.-.+|+.++.+-|...|.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea--LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEA--LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN 395 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence 344667777776 7778888999999999999999999 669999999999888888888777644321
Q ss_pred ----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696 117 ----------------------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 162 (438)
Q Consensus 117 ----------------------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~ 162 (438)
+.++..||..|...|+|+.|+.+|+.||+.+|++...|.++|.++.
T Consensus 396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 4667779999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696 163 ELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 163 ~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~ 205 (438)
.-.+..+|+..|++||+|.|+...+ ++.|.+|..+|-.++.+.
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999988665 788888888888888766
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=6.2e-11 Score=111.42 Aligned_cols=163 Identities=15% Similarity=0.061 Sum_probs=128.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhH-HHHHHHH
Q 013696 14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELG 91 (438)
Q Consensus 14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g 91 (438)
..+-..++|++++....+.+...+... .....+..+|.+| ..|++++|+..|++++...|+++.+ ..++.+|
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSP------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 334456788888888888776554111 1111234456666 8899999999999999999987762 2377999
Q ss_pred HHHHHh--------ccHHHHHHHHHHHhccCCC-HH---H--------------HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 92 NECFKQ--------KKFKEAIDCYSRSIALSPT-AV---A--------------YANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 92 ~~~~~~--------g~y~~Ai~~y~~al~~~p~-~~---~--------------~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
.+++.. |++++|+..|.+++..+|+ .. + ...+|.+|+..|++.+|+..|++++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999987 8999999999999999998 22 1 24678999999999999999999999
Q ss_pred cCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 146 LDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 146 l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
..|+ .+.+++++|.++..+|++++|..+++....-.|
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9765 468999999999999999999998877665444
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.26 E-value=1.6e-10 Score=103.50 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=89.2
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
+...+..+++...+..++.+|..+...|+|++|+.+|.+++.+.|+ ..++.++|.+|..+|++++|+..+.+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555566767899999999999999999999999998765 578999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013696 147 DDRYIKAYSRRATARKELGKLKESIEDS 174 (438)
Q Consensus 147 ~p~~~~a~~~lg~a~~~lg~~~eA~~~~ 174 (438)
.|+++.++..+|.++..+|+...|...+
T Consensus 102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 102 NPKQPSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred CcccHHHHHHHHHHHHHcCChHhHhhCH
Confidence 9999999999999999999854444333
No 55
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.26 E-value=1.7e-10 Score=102.99 Aligned_cols=127 Identities=16% Similarity=0.070 Sum_probs=106.1
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
|-...|..+...+...++..+....+..+..+|.++...|+|++|+.+|.+++.+.|+ +.+|.++|.+|...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 3444577777778777777777777888999999999999999999999999998765 568999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~~-------~lg~~~-------eA~~~~~~al~l~P~~~ 185 (438)
+|+..|.+++.++|.+..++.++|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999999999999 666766 55555556666666554
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=3.9e-11 Score=116.04 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=105.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..++++++...+.++....+.......|..+|.++.+.|++++|+.+|+++++++|+ ..+...++.++...|+++++..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 668888888888886654422223334778899999999999999999999999998 8888888888888899988888
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
.+.......|+++..|..+|.++..+|++++|+.+|+++++.+|+++.....+..++...
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 888888777888888888999999999999999999999999999988876666665533
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=4.2e-11 Score=90.16 Aligned_cols=66 Identities=35% Similarity=0.473 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP 182 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg-~~~eA~~~~~~al~l~P 182 (438)
+.+|.++|.+++..|+|++|+.+|++++.++|+++.+|+++|.++..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777777777777777777777777777777777777777777777 57777777777777776
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.21 E-value=2.2e-10 Score=122.84 Aligned_cols=132 Identities=8% Similarity=0.011 Sum_probs=120.9
Q ss_pred hcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHH
Q 013696 75 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 153 (438)
Q Consensus 75 l~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a 153 (438)
....|+...+ +..+|.+....|.|++|...+..++++.|+ ..++.+++.++.+++++++|+..+++++..+|+++.+
T Consensus 79 ~~~~~~~~~~--~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 79 VRRYPHTELF--QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHhccccHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 3456666677 779999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhh
Q 013696 154 YSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK 208 (438)
Q Consensus 154 ~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~ 208 (438)
++.+|.++..+|+|++|+..|++++..+|+++.+ .++.++|...|++++......
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999999998876 477888999999998776543
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=4.8e-11 Score=113.35 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=127.2
Q ss_pred CCCCCc-CcCCCccchHHHHHhhhcCCCCChhHHHH----------HHHHHHHHHhccHHHHHHHHHHHhccCCC-H---
Q 013696 53 KPSPSG-NSYSRNYDPVSHISSSLMNEESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-A--- 117 (438)
Q Consensus 53 ~~~~~~-y~~g~~~eAi~~~~~al~~~p~~~~a~~~----------~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~--- 117 (438)
..++.. |..|+...++...+.+|+++|+......+ ..-+......++|.++++.+++.++-+|. +
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 344444 58899999999999999999998665432 22344566789999999999999999998 3
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 118 -VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 118 -~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
..+..+..||..-+++.+|++.|.+++.++|+++.++..+|.+|..-..|+.|+.+|++|+.++++|..+...++.|.+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 3345567899999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHH
Q 013696 197 LYEKE 201 (438)
Q Consensus 197 ~~~ka 201 (438)
+..++
T Consensus 387 lkkqs 391 (504)
T KOG0624|consen 387 LKKQS 391 (504)
T ss_pred HHHHh
Confidence 76543
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=7.8e-11 Score=117.79 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=99.0
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|..|+|++|+.+|.+++.++|++..+ +..+|.+|...|+|++|+.++.+++.++|. +.+|+++|.+|+.+|+|++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999999999999999888 679999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.+|++++.++|++..+...++.+...+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988888876663
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=3.7e-10 Score=93.70 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~ 159 (438)
++.+|..++..|+|++|+..|.+++..+|+ +.+++.+|.++...|++++|+..|..++..+|++ +.+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 679999999999999999999999999886 5789999999999999999999999999998885 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 160 ARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
++..+|++++|+..+++++...|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999987653
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1e-10 Score=113.65 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=129.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------HHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMA 126 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------~~~~~~la~~ 126 (438)
-+|++++|+..-...+++++.+.++ ++..|.+++-.++.+.|+.+|++++.++|+ -..+...|.-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 6799999999999999999999888 779999999999999999999999999998 1456778999
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHH
Q 013696 127 YLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA 192 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~ 192 (438)
.++.|+|..|.+.|+.+|.++|++ ++.|.++|.++..+|+..+|+.+++.++.|+|....+ ++.++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 5679999999999999999999999999999987665 66777
Q ss_pred HHHHHHHHHHhhch
Q 013696 193 EVKSLYEKEVFQKA 206 (438)
Q Consensus 193 ~a~~~~~ka~~~~~ 206 (438)
+|.+.|++++.+..
T Consensus 339 ~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777777766553
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6.1e-11 Score=119.56 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=107.1
Q ss_pred ccchHHHHHhhhcCCC--CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 64 NYDPVSHISSSLMNEE--STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 64 ~~eAi~~~~~al~~~p--~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
+..-.+.|-.+-...| .+++. +..+|..|+-.|+|+.|+.||+.||..+|+ ..+|..+|..+..-.+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~Dpdv--Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDV--QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhH--HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 4444566667766777 44555 569999999999999999999999999999 999999999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 141 ~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.+|+++.|.++.++|++|.++..+|.|++|+.+|-.||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999876
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.20 E-value=2.8e-10 Score=88.33 Aligned_cols=97 Identities=40% Similarity=0.591 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
++.+|..++..|++++|+..+.++++..|. ..++..+|.++...+++++|+.+|.+++.+.|.+..+++.+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 678999999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 013696 166 KLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~ 183 (438)
++++|...+.+++.++|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
No 65
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9e-11 Score=106.55 Aligned_cols=99 Identities=39% Similarity=0.599 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (438)
Q Consensus 83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~ 161 (438)
.+..++..|+.||.-++|..||.+|.++|.++|. +..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3555789999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC
Q 013696 162 KELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 162 ~~lg~~~eA~~~~~~al~l~ 181 (438)
.....|++|+..+.++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997664
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.8e-11 Score=113.40 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=126.8
Q ss_pred ccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696 46 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR 123 (438)
Q Consensus 46 ~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l 123 (438)
|.+...+.+++..| .++++++|.++|..+++.+|.+.++.+ -+|..||-.++.+-|+.+|++.+++.-. +..+.|+
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 33444445556667 789999999999999999999999866 8899999999999999999999999877 9999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~p---~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
|.|.+..++++-++-.|.+|+...- .-.+.||++|.+....|++.-|..+|+-+|.-+|++.++..++.
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 9999999999999999999998754 33678999999999999999999999999999999998865543
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=3.6e-10 Score=103.62 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=101.0
Q ss_pred hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH-HHcCC--HHHHHH
Q 013696 97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESIE 172 (438)
Q Consensus 97 ~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~-~~lg~--~~eA~~ 172 (438)
.++.++++..+.+++..+|+ ..+|..+|.+|..+|++++|+..|.+++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 67789999999999999999 999999999999999999999999999999999999999999985 67788 599999
Q ss_pred HHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696 173 DSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 173 ~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~ 206 (438)
.++++++++|++..+ .+++.+|...|++++.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999887 4677888888888887763
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=107.52 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696 13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG 91 (438)
Q Consensus 13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g 91 (438)
.-+..++++.+.+++.+...++..+-+++ ++.-++..| .-++.+-|+.+|++.|.+.-.+++. +.++|
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvE---------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~Nig 365 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVE---------AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIG 365 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccce---------eeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHH
Confidence 44566777888888888887776653332 445566666 7788999999999999999888888 77999
Q ss_pred HHHHHhccHHHHHHHHHHHhccC--CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALS--PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~--p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
.|++-.++|+-++.+|.+++... |. +.+|+|+|.+....|++..|..+|+-|+..|+++..++.++|..-...|+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 99999999999999999999975 44 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHH
Q 013696 168 KESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~ 187 (438)
.+|...++.|-.+.|+-.+.
T Consensus 446 ~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHHHHHHHhhhhCcccccc
Confidence 99999999999999986554
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=1.9e-10 Score=86.50 Aligned_cols=65 Identities=40% Similarity=0.647 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcCC
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD 148 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-~~~eA~~~~~~al~l~p 148 (438)
+..|..+|.+++..|+|++|+.+|.++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344889999999999999999999999999999 999999999999999 79999999999999998
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=1e-09 Score=120.63 Aligned_cols=132 Identities=10% Similarity=0.112 Sum_probs=113.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
-.|++++|+..+.++...+|....+ +..+|.++...|++++|+.+|+++++++|. +.++..+|.++...|++++|+.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5688889999998888777766666 568899999999999999999999999988 8888899999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 194 (438)
.+++++..+|+++. ++.+|.++...|++++|+..|++++.++|++..+...+..+
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999988 88999999999999999999999999999988875554443
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=7.6e-10 Score=121.59 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHH
Q 013696 18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNEC 94 (438)
Q Consensus 18 ~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~ 94 (438)
..+++.+++..+...++..+ .. +... ....+..| ..|++++|+..|++++..+|.... ......++..+
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~-~~-----P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQ-II-----PPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HhhhHHHHHHHHHHhhccCC-CC-----CHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 44677888877777554421 10 1000 01124455 788888899888888887776521 12244677778
Q ss_pred HHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696 95 FKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158 (438)
Q Consensus 95 ~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg 158 (438)
...|++++|+..+.++....|. ..++..+|.++...|++++|+..+++++...|+++.+++.+|
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888899888888888887662 346778888888888888998888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhhh
Q 013696 159 TARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL 210 (438)
Q Consensus 159 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~~ 210 (438)
.++...|++++|+..+++++.++|++..+ .+++.+|...+++.+...+..+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 88888888889999999888888888554 56777888888888777765544
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.09 E-value=6.8e-10 Score=96.14 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=84.7
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|..|++++|...|+-+..++|.+... |+++|.++-..|+|.+||.+|.+++.++|+ +.++++.|.||+.+|+.+.|.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y--~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDY--WFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 38899999999999999999998888 889999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCc
Q 013696 138 DDCTEALNLDDR 149 (438)
Q Consensus 138 ~~~~~al~l~p~ 149 (438)
..|+.||.+...
T Consensus 124 ~aF~~Ai~~~~~ 135 (157)
T PRK15363 124 KALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHhcc
Confidence 999999988643
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.08 E-value=5.5e-10 Score=107.96 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--CC-HHHHHHHHHHHHH
Q 013696 53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLK 129 (438)
Q Consensus 53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~ 129 (438)
.+++..+..+++++|+..+.+++...+ ++.. +......+...|+++++...+.++.... +. +..|..+|.++.+
T Consensus 82 ~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~--l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 82 ERLIQLLQDGDPEEALKLAEKAYERDG-DPRY--LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc-ccch--hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 334433567888888888888776553 3333 4466777888899999999988877654 33 7888889999999
Q ss_pred hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHH
Q 013696 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYE 199 (438)
Q Consensus 130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ 199 (438)
.|++++|+.+|++++.++|++..+...++.++...|+++++...+.......|.++.. .++..+|+..|+
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999999999999999999999999999998888888877777666544 577788888888
Q ss_pred HHHhhchhhhh
Q 013696 200 KEVFQKASKTL 210 (438)
Q Consensus 200 ka~~~~~~~~~ 210 (438)
+++..++.++.
T Consensus 239 ~~~~~~p~d~~ 249 (280)
T PF13429_consen 239 KALKLNPDDPL 249 (280)
T ss_dssp HHHHHSTT-HH
T ss_pred ccccccccccc
Confidence 88777665443
No 74
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=3.2e-09 Score=105.69 Aligned_cols=138 Identities=20% Similarity=0.141 Sum_probs=125.4
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|..|++++|...++..+...|+++.... ..|.+++..+++.+|++.+.+++.++|+ ...+.++|.+|++.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~--~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLE--LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3779999999999999999999998844 8899999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
..+...+.-+|+++..|..+|.+|..+|+-.+|...+-..+.+......+...+..|.+.+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988887666666655555543
No 75
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=113.88 Aligned_cols=115 Identities=38% Similarity=0.599 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (438)
Q Consensus 86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l 164 (438)
.++..|+.+++.+.|+.|+..|.++|+++|+ +..+.+++.++++.++|..|+.++.+||+++|.+.++|+++|.++..+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3668899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 165 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 165 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
+++.+|+.+|+....+.|+++.+...+.++..+..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888776554
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=2e-09 Score=102.49 Aligned_cols=117 Identities=25% Similarity=0.392 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (438)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a 160 (438)
.++..+..+|..++..|++.+|+..|..|++.+|+ ..+++.+|.+|+.+|+-..|+.+++++|++.|+...|...+|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 44555889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHH
Q 013696 161 RKELGKLKESIEDSEFALRLEPQNQ---EIKKQLAEVKSLY 198 (438)
Q Consensus 161 ~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~a~~~~ 198 (438)
+.++|.+++|..+|+.+|..+|++. +++..+..+.+.+
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence 9999999999999999999999664 4444554444443
No 77
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.9e-09 Score=99.85 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=115.2
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc---CHHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAE 137 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~---~~~eA~ 137 (438)
...+.-+..++..|..+|++.+. |..+|.+|+..|++..|...|.+++++.|+ +..+..+|.++.... .-.++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 34566777888889999999998 779999999999999999999999999998 999999998877765 467899
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 193 (438)
..+++++.+||.++.+.+.+|..++..|+|.+|+..++..|.+.|.+..-...++.
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999988655444433
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.06 E-value=5.8e-09 Score=96.46 Aligned_cols=135 Identities=18% Similarity=0.156 Sum_probs=122.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|+-+.+.....++....|.+... +..+|...+..|+|..|+..++++..+.|+ +.+|..+|.+|.+.|++++|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence 6677788888888888778877777 557999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
.|.+++++.|..+.++.++|..|.-.|+++.|...+..+...-+.+..+..++.-+..
T Consensus 156 ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988888888776665544
No 79
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=113.00 Aligned_cols=189 Identities=19% Similarity=0.160 Sum_probs=146.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696 12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL 90 (438)
Q Consensus 12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~ 90 (438)
.-.++..++.|..-|-.+...=+.......+. ...........| ..||+-.--.+|++++.+. +...+.+.+.+
T Consensus 417 Al~I~Erlemw~~vi~CY~~lg~~~kaeei~~----q~lek~~d~~lyc~LGDv~~d~s~yEkawEls-n~~sarA~r~~ 491 (777)
T KOG1128|consen 417 ALVIFERLEMWDPVILCYLLLGQHGKAEEINR----QELEKDPDPRLYCLLGDVLHDPSLYEKAWELS-NYISARAQRSL 491 (777)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcccchHHHHHH----HHhcCCCcchhHHHhhhhccChHHHHHHHHHh-hhhhHHHHHhh
Confidence 34677888999887664322111110000000 000012233446 6788888888999999877 44555556788
Q ss_pred HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e 169 (438)
|...+..++|++|..+++.+++++|- ...|+++|.|.++++++..|..+|.+++.++|++..+|.+++.+|..+|+-.+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 88889999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696 170 SIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 170 A~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~ 205 (438)
|...+.+|++-+-.+... .++.++|+..|.+.+..+
T Consensus 572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999666554 467788888888766654
No 80
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.05 E-value=5.7e-09 Score=110.75 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=115.4
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCChhHHH-----------------------------------HHHHHHHHHHhc
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATS-----------------------------------EKELGNECFKQK 98 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~-----------------------------------~~~~g~~~~~~g 98 (438)
+|-+| .+|+.+.|+..+.++++++|.+..+.. +..+++-||-.|
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 33344 778888888888888888876533211 567888888899
Q ss_pred cHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHH
Q 013696 99 KFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIED 173 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-~~a~~~lg~a~~~lg~~~eA~~~ 173 (438)
+|..+...+..++...-. +..+|++|.+|..+|+|++|..+|.++++.++++ .-+++++|..|...|+++.|+.+
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999999888886633 6779999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH
Q 013696 174 SEFALRLEPQNQEIKKQL 191 (438)
Q Consensus 174 ~~~al~l~P~~~~~~~~l 191 (438)
|++++..+|++.+...-+
T Consensus 365 fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred HHHHHHhCcchHHHHHHH
Confidence 999999999998874333
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.04 E-value=2e-09 Score=91.91 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 105 ~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
..|.+++.++|. ..+.+.+|.+++..|++++|+..+++++.++|.++.+|+++|.++..+|++++|+.+|++++.++|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468899999998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696 184 NQEI----------KKQLAEVKSLYEKEVFQKAS 207 (438)
Q Consensus 184 ~~~~----------~~~l~~a~~~~~ka~~~~~~ 207 (438)
++.. .+++.+|...|++++...+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 9776 45566677777777666543
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=6e-10 Score=87.44 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=65.7
Q ss_pred hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 013696 97 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED 173 (438)
Q Consensus 97 ~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~ 173 (438)
+|+|+.|+..|+++++.+|. ...++++|.||+.+|+|++|+..+++ +..++.++...+.+|.++..+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888888888888888883 56677788899889999988888888 778888888888888889999999998888
Q ss_pred HHHH
Q 013696 174 SEFA 177 (438)
Q Consensus 174 ~~~a 177 (438)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8765
No 83
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.2e-09 Score=81.17 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677888888888888888888888888888888888888888888888888888888888764
No 84
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.6e-09 Score=97.45 Aligned_cols=103 Identities=28% Similarity=0.378 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcc--------CCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--------~p~-----------~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
..+...||-+|+.|+|.+|..+|..|+.. .|. ..++.|.+.|++..|+|-++++.|...+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33789999999999999999999999864 233 35789999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.+|+|++|||++|.++...=+..+|..+|.++|+++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999986554
No 85
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.4e-08 Score=93.40 Aligned_cols=123 Identities=21% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
.|.+++|+++|+..|..+|.+... ++..-.+.-.+|+--+||+.....++.++. ..+|..++.+|+..|+|+.|.-+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 355555555555555555544444 223333444445555555555555555554 55555555555555555555555
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH
Q 013696 140 CTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 140 ~~~al~l~p~~~~a~~~lg~a~~~lg---~~~eA~~~~~~al~l~P~~~ 185 (438)
++..+-+.|.++-.+.++|.+++-+| ++.-|..+|.++++++|.+.
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 55555555555555555555555443 34455555555555555443
No 86
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.00 E-value=6.2e-09 Score=113.73 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=114.4
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|+.|++..|+..|.+++..+|.++.+.. .+..++...|++++|+.++++++.-.|. ...+..+|.+|..+|+|++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3778888999999999988888754422 7777777888888888888888832232 555555677888888888888
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------H---HHHHHHHHHHHHHHhhchhh
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI------K---KQLAEVKSLYEKEVFQKASK 208 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~------~---~~l~~a~~~~~ka~~~~~~~ 208 (438)
..|++++..+|+++.+++.++.++...|++++|+..+++++..+|.+... . +...+|+..|++++...+.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 88888888888888888888888888888888888888888888886553 1 33335777777777777654
Q ss_pred h
Q 013696 209 T 209 (438)
Q Consensus 209 ~ 209 (438)
.
T Consensus 203 ~ 203 (822)
T PRK14574 203 E 203 (822)
T ss_pred H
Confidence 4
No 87
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=5.1e-09 Score=91.17 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.+..|..++..|+|++|...|+-..-.+|. ...|..+|.|+..+++|++|+..|..|..++++++...+..|.||..+|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 778999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~ 187 (438)
+...|+..|..++. .|.+..+
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999998 5665544
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.99 E-value=1.4e-08 Score=107.12 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=118.4
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|-.|++++|...+.+++..+|.+..+ |+.+|.+|-..|+.++|+.++..|-.++|. ...|..+|.....+|++.+|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 45599999999999999999999999 779999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
-+|.+||+.+|.+.+.+++++..|.++|++..|...|.+++.+.|
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-09 Score=110.36 Aligned_cols=124 Identities=22% Similarity=0.160 Sum_probs=113.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..+.-++|..++.++-.++|..... |+..|..+...|++.+|..+|..|+.++|+ ..+...+|.+++..|+-.-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 5677888888999998888877666 779999999999999999999999999999 8889999999999998888888
Q ss_pred --HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 139 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 139 --~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
....++++||.++++|+.+|.++..+|+.++|.++|..|+.|++.+|
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999999999998876
No 90
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.95 E-value=2e-08 Score=95.87 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=94.0
Q ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHH
Q 013696 85 TSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR 156 (438)
Q Consensus 85 ~~~~~~g~~~-~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~ 156 (438)
..++..|..+ ++.|+|++|+..|...+..+|+ +.+++.+|.+|+..|+|++|+..|.+++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3367788876 6679999999999999999998 5899999999999999999999999999988874 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 157 RATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
+|.++..+|++++|+..|+++++..|+...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999998765
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=1.6e-08 Score=87.95 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=100.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
..++...+...++..+..+|+.+. ......+|..++..|+|++|+..|..++...|+ ..+..++|.+++..|+|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345667777788888888888833 345778999999999999999999999998765 677899999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
+|+..+.. +.-.+-.+.++..+|.++...|++++|+..|+++|
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999966 34444557788999999999999999999999875
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=3e-09 Score=109.35 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=121.7
Q ss_pred CCCcC-cCCCccchHHHHHhhhcC--------CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--------CC-
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT- 116 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~--------~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~- 116 (438)
++..| ..|+|+.|+..+..++.+ .|. .+..++.+|..|..+++|.+|+..|.+|+.+. |.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33345 789999999999999987 222 22335679999999999999999999999873 33
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE-----PQ 183 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~-----P~ 183 (438)
+.++.|+|..|.+.|+|.+|..+|++|+.+- |.-...+..++.++..++++++|+.++++++++. +.
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 7889999999999999999999999999774 3345678899999999999999999999999875 33
Q ss_pred CHHH-------------HHHHHHHHHHHHHHHhhc
Q 013696 184 NQEI-------------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 184 ~~~~-------------~~~l~~a~~~~~ka~~~~ 205 (438)
++.. .+.+.+|.++|.+++...
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3222 567788888888887765
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=5.3e-09 Score=77.64 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~ 151 (438)
+.+|..++..|+|++|+.+|+++++.+|. +.+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36799999999999999999999999999 99999999999999999999999999999999875
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.3e-08 Score=89.60 Aligned_cols=145 Identities=17% Similarity=0.090 Sum_probs=128.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
+.|+.+-|..++.+.-...|+.... .+..|..+-..|+|++|+++|...++-+|. ..++-..-.+...+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 5688899999999988888988888 558899999999999999999999999998 7777777777788999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------------HHHHHHHHHHHHHHHhhc
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-------------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-------------~~~l~~a~~~~~ka~~~~ 205 (438)
....-+...+.+..+|.-++.+|...|+|.+|.-+++.++-+.|.++-. ..++.-++.+|.+++.++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999876 344556667777777766
Q ss_pred h
Q 013696 206 A 206 (438)
Q Consensus 206 ~ 206 (438)
+
T Consensus 222 ~ 222 (289)
T KOG3060|consen 222 P 222 (289)
T ss_pred h
Confidence 4
No 95
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=6.6e-08 Score=90.59 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~ 159 (438)
+|+.|..+++.|+|..|...|..-++..|+ +.++|.||.+++.+|+|+.|...|..+++-.|++ +.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 779999999999999999999999999998 8999999999999999999999999999998876 577999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 160 ARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
+...+|+.++|...|+++++-.|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987663
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=1.6e-08 Score=104.08 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=143.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCC----
Q 013696 6 RDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEES---- 80 (438)
Q Consensus 6 r~~~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~---- 80 (438)
+.-...+..++..+..+.+++.-+.+++..-. ......++.....+..++..| ..|+|.+|..++++++.+...
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e-~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIRE-EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 34445678888888888888887777775442 222234455555667788888 899999999999999885422
Q ss_pred -Ch-hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC--------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--
Q 013696 81 -TP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-- 147 (438)
Q Consensus 81 -~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p--------~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-- 147 (438)
.+ .+..+.++|..+..+++|++|+.+|.+++++.- . +..+.|+|.+|+++|+|.+|+..|.+||.+.
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11 133377999999999999999999999998742 2 7789999999999999999999999999774
Q ss_pred ------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHH
Q 013696 148 ------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE----PQNQEIK 188 (438)
Q Consensus 148 ------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~----P~~~~~~ 188 (438)
+.....+..+|..|.+++++.+|...|.++..+. |+.+...
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 3346788999999999999999999999998775 5555553
No 97
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=2.2e-09 Score=84.17 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
+|+|++|+..|++++..+|.+.....++.+|.+|++.|+|++|+..+++ +..++. ....+.+|.|++.+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5889999999999999998653444577899999999999999999999 778887 67777889999999999999999
Q ss_pred HHHH
Q 013696 140 CTEA 143 (438)
Q Consensus 140 ~~~a 143 (438)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.6e-08 Score=93.65 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=109.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|+|.+|+..++++..+.|++..+ |..+|.+|.+.|++++|-..|.+++++.|+ +.++.|+|+.|+-.|+++.|..
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 7899999999999999999999999 669999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
.+..+....+.+..+..+++.+....|++.+|......
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999999999876543
No 99
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.6e-08 Score=96.07 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=135.2
Q ss_pred CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696 53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 131 (438)
Q Consensus 53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~ 131 (438)
......|.-.++..|+.+-+++|..+|++..+ +...|+.+...|+.++|+-.|+.|+.+.|. -..|-.+-.||+..|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 33444467889999999999999999999999 568899999999999999999999999998 888999999999888
Q ss_pred CHHHH------------------------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696 132 RFQEA------------------------------------EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175 (438)
Q Consensus 132 ~~~eA------------------------------------~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~ 175 (438)
++.+| ...+++++.++|.+..|...+|..+..-|++..++..++
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 86555 456677778889999999999999999999999999999
Q ss_pred HHHhhCCCCHH---------HHHHHHHHHHHHHHHHhhchhhhh
Q 013696 176 FALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKTL 210 (438)
Q Consensus 176 ~al~l~P~~~~---------~~~~l~~a~~~~~ka~~~~~~~~~ 210 (438)
++|...|++.- +.+.+.+++..|..|+.+++.+..
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 99999998742 367889999999999999876554
No 100
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.90 E-value=6.5e-08 Score=99.02 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=114.3
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
+++|+-++|..+...++..++..... |..+|..+...++|++||+||+.|+.+.|+ ..+|.-++....++++|+...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 48999999999999999999888887 779999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
..-.+.+++.|.....|...|.++.-+|+|..|...++......
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888776655
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1.2e-08 Score=101.71 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=102.9
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHh----ccCCC-HHHHHHHHHHHHHhcCH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRF 133 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al----~~~p~-~~~~~~la~~~~~l~~~ 133 (438)
+..|++++|+..+++++..+|++..+ +.. +..++..|.+..+.....+++ ..+|. ..++..+|.++...|++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 37799999999999999999998866 334 666666655554444444444 34455 67788899999999999
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
++|+..+++++.++|+++.++..+|.++...|++++|+..+++++.+.|.+
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 999999999999999999999999999999999999999999999998754
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.90 E-value=6.7e-09 Score=110.26 Aligned_cols=137 Identities=22% Similarity=0.193 Sum_probs=122.1
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
+.+++|++.|.++|..+|.+..| -+.+|.++...|++.+|+..|.+..+.-.+ +.+|.|+|.||+.+|+|..|++.|
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999888 669999999999999999999998886665 889999999999999999999999
Q ss_pred HHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 141 TEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 141 ~~al~l~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
+.+++.. .+++..+..||.+++..|.+.+|..++.+|+.+.|.++.+..++..+...+..
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 9999754 46789999999999999999999999999999999999886666655554443
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=1.7e-08 Score=105.38 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=106.4
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh--------ccHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYL 128 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~--------g~y~~Ai~~y~~al~~--~p~-~~~~~~la~~~~ 128 (438)
..+.+..|+.+|+++++++|++..+++ .++.++... ++...|.....+++.+ +|. +.+|.-+|..+.
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~ 431 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL 431 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence 345588999999999999999988865 666666443 3455667777777775 555 888999999999
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
..|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus 432 ~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999 58899999999999999999999999999999998754
No 104
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=3.8e-08 Score=96.75 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=128.6
Q ss_pred CcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696 57 SGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (438)
Q Consensus 57 ~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e 135 (438)
.+|..|++++|.+.|.++|..+....++ ++++|..+-.+|+.++|+.||-+...+--+ +.+++.++.+|..+.+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 3478999999999999999988766667 889999999999999999999998887666 8999999999999999999
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~ 205 (438)
|++++.++..+-|+++..+..+|..|-+-|+-.+|.+++-...+..|.|.+.. .-.++++.+++++....
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999888888888887652 23356666666665555
Q ss_pred hh
Q 013696 206 AS 207 (438)
Q Consensus 206 ~~ 207 (438)
++
T Consensus 657 p~ 658 (840)
T KOG2003|consen 657 PN 658 (840)
T ss_pred cc
Confidence 43
No 105
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.85 E-value=5.4e-08 Score=106.43 Aligned_cols=167 Identities=13% Similarity=0.071 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696 20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK 98 (438)
Q Consensus 20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g 98 (438)
+++..++....+.++..+.... ....+...+ ..|++++|+.++++++ +|.+.....+..+|..|..+|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~---------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSG---------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchh---------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC
Confidence 3445667777777766541110 000112223 6699999999999999 555555555667788999999
Q ss_pred cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
+|++|++.|+++++.+|+ +.++..++.+|...+++++|+..+.+++..+|.+... ..++.++...+++.+|+..|+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999999999 8888899999999999999999999999999986554 55666676788888899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHH
Q 013696 178 LRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 178 l~l~P~~~~~~~~l~~a~~~~ 198 (438)
+.++|++.++...+-.++..+
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHc
Confidence 999999999877666655543
No 106
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=9.1e-08 Score=80.09 Aligned_cols=108 Identities=25% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~ 159 (438)
+++.|.++-..|+.++|+.+|++++..... ..++.++|.+|..+|++++|+..++.++.-.|+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 679999999999999999999999997644 778999999999999999999999999999888 7788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
++..+|++++|+..+-.++.-. ...|.+++..|..
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~~------~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAET------LPRYRRAIRFYAD 118 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 9999999999999998887522 2266677766643
No 107
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.1e-08 Score=93.91 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=120.3
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHH
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAM 125 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~ 125 (438)
..+|.-| ..|-++.|...|........--..| +..+-++|-...+|++||++-++...+.+. +..|+.+|.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A--lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA--LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 4556667 7788899999888877654444445 668899999999999999999999999876 677999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 013696 126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLY 198 (438)
Q Consensus 126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~a~~~~ 198 (438)
.+....+++.|...+.+|++-+|.++.+-..+|.++...|+|+.|++.++.+++.||.. +++...+.+|...+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999976 34444444444433
No 108
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=6.3e-08 Score=97.01 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=111.1
Q ss_pred CCccchHHHHHhhh---cCCCCChhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696 62 SRNYDPVSHISSSL---MNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128 (438)
Q Consensus 62 g~~~eAi~~~~~al---~~~p~~~~a~~~~~~g~~~~~~---------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~ 128 (438)
.....|+.+|.+++ .++|....++. .++.+++.. ....+|...-.+|++++|. +.+++.+|.++.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~--~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYC--LLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35678999999999 89999888844 778777664 3467899999999999998 999999999999
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
..++++.|+..|++|+.++|+.+.+|+.+|+++...|+.++|.+.++++++++|.-..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999999999999999999999999999999999999999999999997543
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.81 E-value=1e-07 Score=100.86 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (438)
Q Consensus 83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~ 161 (438)
.+..+...||.++..|++++|...+.++|.++|. +.+|+.+|.||..+|+.+.|....-.|-.++|.+..-|.++|...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3555788999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696 162 KELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 162 ~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~ 206 (438)
..+|++.+|.-+|.+|++.+|.+.+. .|.+..|..-|.+...+.+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999776 4667777777777776665
No 110
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.2e-08 Score=96.85 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=95.0
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCC-------------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEEST-------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA 119 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~-------------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~ 119 (438)
-|+.| ..|+|..|+..|++++..-+.. .....+.+++.+|.++++|..|+.+.+++|.++|+ ..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 34444 8999999999999988743211 11223789999999999999999999999999998 999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~ 168 (438)
+|.+|.+++.+++|+.|+.+|.+|++++|.|-.+..-+..+..+..++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877777776665554443
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-08 Score=95.27 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=84.6
Q ss_pred ccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 013696 48 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM 125 (438)
Q Consensus 48 ~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~ 125 (438)
+...+..+|.+| ..|++++|+..|+++.-++|.+..+.. ..|..+...|+|++--..-...+.++.. +.-|+--|.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD--~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD--LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH--HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 344456677776 899999999999999999998877654 4455555555555544444444444433 444444444
Q ss_pred HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
..+..++|..|+.+..++|+.+|++..++...|.++..+|+.++|+-.|+.|..+.|..-+.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 45555555555555555555555555555555555555555555555555555555544433
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=97.83 Aligned_cols=128 Identities=19% Similarity=0.120 Sum_probs=85.9
Q ss_pred CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
++.+|-.+...++.++..++.+ +.+.|+..|..|+|++|.+.|..++.-+.. ..+++|+|..+..+|+.++|+.+|-
T Consensus 471 ~~~~aqqyad~aln~dryn~~a--~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAA--LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred chhHHHHHHHHHhcccccCHHH--hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 3444445555555555444445 446677777777777777777777766655 6777777777777777777777777
Q ss_pred HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 142 ~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
+.-.+--+++..++.++.+|..+.+..+|+++|-++..+-|+++.++..+.
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 666655566777777777777777777777777777777777776654443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=3.7e-08 Score=101.99 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=132.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCc-CcCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSG-NSYSRNYDPVSHISSSLMNEESTPDATSEKE 89 (438)
Q Consensus 11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~ 89 (438)
-++|+..+-.-||++..-.+....+.. +..|.. |..++|.++..+++..+.++|-.... |+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~---------------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~--wf~ 524 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQ---------------RSLALLILSNKDFSEADKHLERSLEINPLQLGT--WFG 524 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHH---------------HhhccccccchhHHHHHHHHHHHhhcCccchhH--HHh
Confidence 456777777778777664333322211 112222 46789999999999999999988887 889
Q ss_pred HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696 90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (438)
Q Consensus 90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~ 168 (438)
+|.+..+.+++..|..+|.+++.++|+ ..+|.|++.+|.++++-.+|-..+.+|++.+-.+.+.|-|.-.+....|.++
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 013696 169 ESIEDSEFALRLEP 182 (438)
Q Consensus 169 eA~~~~~~al~l~P 182 (438)
+|+..|.+.+.+.-
T Consensus 605 da~~A~~rll~~~~ 618 (777)
T KOG1128|consen 605 DAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987753
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=3.9e-08 Score=88.06 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=96.9
Q ss_pred CCCCCCcC-cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696 52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128 (438)
Q Consensus 52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~ 128 (438)
+...|..| ..|++++|+.+|.+++...|+... +..+..+|.++...|+|++|+.+|.+++...|. ..++.++|.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455555 789999999999999988765442 445889999999999999999999999999998 889999999999
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
.+|+...+...+..++. .+.+|++++++++.++|++.
T Consensus 118 ~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 99998888877776653 37889999999999999873
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.77 E-value=4.8e-08 Score=80.86 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=85.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
..|++++|+..|.+++...|++.. ...++.+|.+++..|+|+.|+.+|.+++..+|+ +.+++++|.++..+|+++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 779999999999999998887632 233779999999999999999999999999887 678999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHH
Q 013696 135 EAEDDCTEALNLDDRYIKAY 154 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~ 154 (438)
+|+..+.+++...|++..+.
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHCcCChhHH
Confidence 99999999999999987653
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.77 E-value=2.1e-07 Score=85.66 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=109.7
Q ss_pred CcCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc--
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-- 131 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~-- 131 (438)
+..|+|.+|+..|+.++...|..+. ..+.+.+|.++++.|+|..|+..|++.+...|+ +.+++.+|.+++.+.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 3789999999999999998887654 234779999999999999999999999999998 788999999987764
Q ss_pred ---------CHHHHHHHHHHHhhcCCccHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 132 ---------RFQEAEDDCTEALNLDDRYIKA-----------------YSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 132 ---------~~~eA~~~~~~al~l~p~~~~a-----------------~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
...+|+..|+..+...|+...+ -+..|.-|...|+|..|+.-++.+++-.|+.+
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 3458999999999999976321 23467888999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 013696 186 EIKKQLAEVKSLY 198 (438)
Q Consensus 186 ~~~~~l~~a~~~~ 198 (438)
....-+....+.|
T Consensus 176 ~~~~al~~l~~~y 188 (203)
T PF13525_consen 176 AAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7754444444433
No 117
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=3.6e-07 Score=77.96 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH---HHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSRR 157 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~---~a~~~l 157 (438)
..++..|...++.|+|.+|++.|+......|. ..+...+|.+|++.++|++|+..+++-|+++|.++ .+++.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 34889999999999999999999999999986 78899999999999999999999999999999875 579999
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 013696 158 ATARKELGK---------------LKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 158 g~a~~~lg~---------------~~eA~~~~~~al~l~P~~~~~ 187 (438)
|.++..+.. ...|...|+++++..|++.-+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999987 889999999999999988654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=7.1e-08 Score=104.81 Aligned_cols=134 Identities=14% Similarity=-0.005 Sum_probs=114.9
Q ss_pred ccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H----
Q 013696 44 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---- 117 (438)
Q Consensus 44 ~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---- 117 (438)
..+....++.++...| ..+++++|+...+.++...|+...+ ++.+|..++..+++.+|... .++.+.+. .
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3444444556666677 8999999999999999999999888 67899999999988877665 55555443 3
Q ss_pred ---------------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 118 ---------------VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 118 ---------------~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
.+++.+|.||-++|++++|...++++++++|+|+.++.++|..|... +.++|+.++.+|+...-
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 99999999999998743
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.70 E-value=6.8e-07 Score=84.57 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=114.1
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 132 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~- 132 (438)
+..|+|++|+..|++++...|..+.+ .+.+.+|.++++.++|++|+..|++.++.+|+ +.+++.+|.|+..++.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 37799999999999999999988664 23579999999999999999999999999987 7889999999765541
Q ss_pred -----------------HHHHHHHHHHHhhcCCccHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 133 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 133 -----------------~~eA~~~~~~al~l~p~~~~---a--------------~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
-..|+..|++.+...|+... + -+..|.-|.+.|+|..|+.-++.++
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 35788999999999997632 2 2345667889999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHH
Q 013696 179 RLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 179 ~l~P~~~~~~~~l~~a~~~~ 198 (438)
.-.|+.+....-+......|
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay 222 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAY 222 (243)
T ss_pred HHCCCCchHHHHHHHHHHHH
Confidence 99999877654444444443
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=6.5e-08 Score=73.38 Aligned_cols=64 Identities=31% Similarity=0.454 Sum_probs=48.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
..+|+..++|++|+.++++++.++|+++.+|+.+|.++..+|++.+|+.+|++++++.|+++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777777777777777777777777777777777777777777777777777777776655
No 121
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=1.1e-07 Score=73.43 Aligned_cols=88 Identities=28% Similarity=0.457 Sum_probs=81.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|++++|+..+.+++...|.+..+ +..+|.++...|++++|+.+|.+++...|. ..++..+|.++...|+++.|..
T Consensus 12 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 12 KLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence 6789999999999999999888766 779999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHhhcCCc
Q 013696 139 DCTEALNLDDR 149 (438)
Q Consensus 139 ~~~~al~l~p~ 149 (438)
.+.+++..+|.
T Consensus 90 ~~~~~~~~~~~ 100 (100)
T cd00189 90 AYEKALELDPN 100 (100)
T ss_pred HHHHHHccCCC
Confidence 99999988873
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.67 E-value=9.8e-08 Score=72.38 Aligned_cols=69 Identities=28% Similarity=0.431 Sum_probs=63.8
Q ss_pred HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
...|+..++|+.|+.++++++.++|+ +.+|..+|.||..+|+|.+|+.++++++..+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 57889999999999999999999999 9999999999999999999999999999999999887765543
No 123
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.67 E-value=3.9e-07 Score=75.69 Aligned_cols=98 Identities=26% Similarity=0.271 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATAR 161 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~ 161 (438)
+-..|..+...|+.+.|++.|.++|.+.|. +.+|.|++.+|.-+|+.++|+.++.+|+.+..+- ..+|..+|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 456788899999999999999999999999 9999999999999999999999999999997543 45799999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC
Q 013696 162 KELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 162 ~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
..+|+-+.|..+|+.+-++....
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999998887644
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.1e-07 Score=101.14 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=124.7
Q ss_pred cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHH
Q 013696 51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMA 126 (438)
Q Consensus 51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~ 126 (438)
.+.-+|..| ...+...|..+|.++..+++.+..+ ....+..|....+++.|.....++-+..|- ...|..+|..
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 345566666 3447888899999999999887777 448888888889999888887777676665 4567779999
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHH
Q 013696 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKS 196 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~ 196 (438)
|+..+++..|+.+|+.|++.+|.+..+|..+|.+|...|+|..|+..|.++..++|.+.-. .+.+.++..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987643 566777777
Q ss_pred HHHHHHh
Q 013696 197 LYEKEVF 203 (438)
Q Consensus 197 ~~~ka~~ 203 (438)
.+...+.
T Consensus 652 ~l~~ii~ 658 (1238)
T KOG1127|consen 652 ALGLIIY 658 (1238)
T ss_pred HHHHHHH
Confidence 6665443
No 125
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.66 E-value=4.8e-07 Score=94.50 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=109.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhcc---HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHh
Q 013696 77 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL 144 (438)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~---y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--------~~~eA~~~~~~al 144 (438)
.-|.+..++.++..|..++..+. +..|+.+|+++++++|+ +.+|..++.+|.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677788889999999887654 88999999999999999 899998888886653 2445666667766
Q ss_pred hc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhhh
Q 013696 145 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL 210 (438)
Q Consensus 145 ~l--~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~~ 210 (438)
.+ +|.++.+|..+|..+...|++++|...|++|+.++|+ ..+ .|+.++|...|.+|+.+++..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7888899999999999999999999999999999995 444 45778899999999998877654
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=6.8e-07 Score=89.31 Aligned_cols=120 Identities=19% Similarity=0.106 Sum_probs=111.4
Q ss_pred CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696 79 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157 (438)
Q Consensus 79 p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~l 157 (438)
|....+ +|..+..++..|+++.|...++..+...|+ +..+..++.+++..++..+|++.+++++.++|+.+-.+.++
T Consensus 303 ~~~~aa--~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAA--QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHH--HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 444555 779999999999999999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
|.+|.+.|++++|+..++..+.-+|+++..|..+.+|......
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999888888776553
No 127
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=4.5e-07 Score=80.77 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=84.0
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcC
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELG 165 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg 165 (438)
+.+|-.+.|..+...+...++.++. +.+|+++|.++..+|+|++|+..|.+++.+.|+ .+.+|+++|.++..+|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 3445556677777777666666654 788999999999999999999999999998765 3458999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
++++|+.+|++++.++|.+...+..+.
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 999999999999999999877644333
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=6.9e-07 Score=89.02 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=98.6
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
+....+...+......+|....+ +..+|.++...|++++|+..++++++++|+ +.++..+|.+|...|++++|+..+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 94 GMRDHVARVLPLWAPENPDYWYL--LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred cCchhHHHHHhccCcCCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444433444444444 558899999999999999999999999999 889999999999999999999999
Q ss_pred HHHhhcCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 141 TEALNLDDRYI----KAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 141 ~~al~l~p~~~----~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.+++...|..+ ..|..+|.++...|++++|+..|++++...|.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 99999987432 35678999999999999999999999877773
No 129
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.4e-07 Score=82.42 Aligned_cols=95 Identities=26% Similarity=0.295 Sum_probs=86.6
Q ss_pred CcCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~ 134 (438)
|..|+|.+|..-|..+|.+-|.... +..|.+.|.++++++.++.||....++|+++|. ..++..+|.+|.++..|+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 5899999999999999999887643 445779999999999999999999999999999 888999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHH
Q 013696 135 EAEDDCTEALNLDDRYIKA 153 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a 153 (438)
+|+.+|.+.+.++|..-.+
T Consensus 186 ealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHHhCcchHHH
Confidence 9999999999999986533
No 130
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.63 E-value=1.3e-07 Score=94.63 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=63.2
Q ss_pred CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696 77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (438)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~l~~~~eA~~~~~~al~l~ 147 (438)
.+|+++.+ ++++|.+|+..|+|++|+.+|+++|+++|+ + .+|+|+|.||..+|++++|+.++.+|+.+.
T Consensus 70 ~dP~~a~a--~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAED--AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46777777 779999999999999999999999999999 5 469999999999999999999999999984
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.62 E-value=1.8e-07 Score=89.34 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=85.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
..|+|++|+..|...+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+ +.+++.+|.+|..+|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 458999999999999999998853 233789999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHH
Q 013696 135 EAEDDCTEALNLDDRYIKA 153 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a 153 (438)
+|...|++++...|+...+
T Consensus 235 ~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHCcCCHHH
Confidence 9999999999999988654
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.62 E-value=1.2e-07 Score=70.79 Aligned_cols=60 Identities=25% Similarity=0.199 Sum_probs=31.6
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 445555555555555555555555555555555555555555555555555555544443
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=1.1e-07 Score=97.46 Aligned_cols=134 Identities=11% Similarity=0.068 Sum_probs=123.1
Q ss_pred CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696 53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 131 (438)
Q Consensus 53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~ 131 (438)
.++-.+|..++|...+...+..|...|.+++..+ ..|..+...|+-++|..+...++..++. ..+|.-+|.++..-+
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 4444557778888889999999999999999855 8899999999999999999999999998 899999999999999
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
+|++|+++|+.|+.++|+|...|.-++....++|+|+.....-.+.|++.|+....|
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w 146 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW 146 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999887653
No 134
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.62 E-value=8.8e-07 Score=90.16 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=94.8
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC------------------------
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP------------------------ 115 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p------------------------ 115 (438)
..|+++.|+..+++.+..+|+++.+ +..++.+|...|+|++|+..+.+..+..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~a--l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEV--LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999888888888 55888888888888888866555543221
Q ss_pred ------------------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh-------------------------------
Q 013696 116 ------------------T-AVAYANRAMAYLKLRRFQEAEDDCTEALN------------------------------- 145 (438)
Q Consensus 116 ------------------~-~~~~~~la~~~~~l~~~~eA~~~~~~al~------------------------------- 145 (438)
+ +.++...|..+...|+.++|.....+++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHh
Confidence 1 33444556666667776666666666654
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHh
Q 013696 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVF 203 (438)
Q Consensus 146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~ka~~ 203 (438)
..|+++..++.+|.++...|+|.+|..+|++++.+.|++... .++.++|..+|++++.
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555566666777777777777777777777777766542 3444555555555544
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.60 E-value=1.4e-07 Score=70.52 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
++..|+|++|+..|++++..+|+ ..+++.+|.||+..|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 46789999999999999999998 9999999999999999999999999999999999888777664
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.60 E-value=1.8e-06 Score=81.73 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHH
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR 156 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~ 156 (438)
+..++..|..++..|+|++|+..|++++...|. ..+.+++|.+|+++++|++|+..+++.+++.|++ ..+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 334779999999999999999999999999998 4567999999999999999999999999999987 467999
Q ss_pred HHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCHHH
Q 013696 157 RATARKELGK------------------LKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 157 lg~a~~~lg~------------------~~eA~~~~~~al~l~P~~~~~ 187 (438)
+|.++..+++ ..+|+..|+..++..|+..-+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 9998766651 357889999999999988544
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=5.5e-07 Score=98.05 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=106.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH----
Q 013696 77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---- 151 (438)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~---- 151 (438)
.+|.+..+ +..+...|...+++++|+.....++...|+ ..+|+.+|..|+..+++..|... .++.+.+.+.
T Consensus 26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 46777777 669999999999999999999999999999 88999999999999988777655 5555555444
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---------HHHHHHHHHHHHHhhc
Q 013696 152 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK---------QLAEVKSLYEKEVFQK 205 (438)
Q Consensus 152 ---------------~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~---------~l~~a~~~~~ka~~~~ 205 (438)
.|++.+|.||.++|++++|...|+++|+++|+|+.+.+ ++.+|..++.+++...
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998722 6778888888887654
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=1.6e-06 Score=79.78 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRR 157 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~l 157 (438)
..++..|..++..|+|.+|+..|++.+...|. ..+.+.+|.++++.|+|..|+..+++.+...|++ ..+++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34789999999999999999999999999987 7889999999999999999999999999999986 4689999
Q ss_pred HHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH
Q 013696 158 ATARKELG-----------KLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 158 g~a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~ 187 (438)
|.++..+. ...+|+..|+..+...|+.+-+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 99977653 3458999999999999998644
No 139
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=3.9e-07 Score=91.24 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=65.0
Q ss_pred cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 113 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 113 ~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a---~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
.+|+ +.+|+|+|.+|+.+|+|++|+..|++||.++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4787 9999999999999999999999999999999999865 999999999999999999999999998
No 140
>PRK15331 chaperone protein SicA; Provisional
Probab=98.54 E-value=4.8e-07 Score=78.91 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=82.9
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|..|++++|...|+-....+|.++.- +..+|.++-..++|++|+.+|..+..++++ +..++..|.||+.+|+...|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 48999999999999999999988776 789999999999999999999999999988 888999999999999999999
Q ss_pred HHHHHHhhcCCccH
Q 013696 138 DDCTEALNLDDRYI 151 (438)
Q Consensus 138 ~~~~~al~l~p~~~ 151 (438)
.+|..++. .|.+.
T Consensus 126 ~~f~~a~~-~~~~~ 138 (165)
T PRK15331 126 QCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHh-CcchH
Confidence 99999998 45543
No 141
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.54 E-value=7.1e-07 Score=78.59 Aligned_cols=93 Identities=24% Similarity=0.228 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--
Q 013696 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-- 166 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~----------~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-- 166 (438)
|+.|.+.|......+|. +..+++-|.+++.+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45666666666667776 6667776666666543 5667888888888899998999999988887765
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 167 ---------LKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 167 ---------~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
|++|..+|++|..++|+|......++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78999999999999999876544433
No 142
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2.3e-06 Score=81.45 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=57.9
Q ss_pred CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
+++.|+..+.+++..+|+...+.. .+|.++...|+|+.|++.+..+++.+|. +.+.-.+..||..+|+.++.+..+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455555555555555544422 5555555555555555555555555555 444455555555555555555555
Q ss_pred HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 141 ~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.++.+..+. +.+-..++..-....-.+.|..++.+-++-.|+
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 555544432 223333333333444444555555555555444
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.53 E-value=1.1e-06 Score=88.14 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=99.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..++++.|+..+++....+|. + ...++.++...++..+|+....+++...|. ..++...|..++..++++.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 447899999999998887764 4 336788888899999999999999999998 8888889999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
.+++++.+.|++..+|+.+|.+|..+|+|++|+..++.+
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999998776643
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=1.9e-07 Score=71.86 Aligned_cols=64 Identities=30% Similarity=0.381 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
+.++.++|.+|..+|+|++|+.+|++++.+. |..+.+++++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666441 122456677777777777777777777777654
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=2e-06 Score=86.43 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=108.0
Q ss_pred hHH--HHHHHHHHHHHhc---cHHHHHHHHHHHh---ccCCC-HHHHHHHHHHHHHh---------cCHHHHHHHHHHHh
Q 013696 83 DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQEAEDDCTEAL 144 (438)
Q Consensus 83 ~a~--~~~~~g~~~~~~g---~y~~Ai~~y~~al---~~~p~-~~~~~~la~~~~~l---------~~~~eA~~~~~~al 144 (438)
.++ .++..|...+..+ ..+.|+.+|.+|+ .++|. +.+|..+|.|++.. ..-.+|....++|+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 555 5667777776554 4578999999999 99999 99999999999875 13567899999999
Q ss_pred hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT 209 (438)
Q Consensus 145 ~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~ 209 (438)
.++|.++.++..+|.++...|+++.|...|++|+.++|+...+ .++.++|...+++++.++|...
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 9999999999999999999999999999999999999999887 3566788888888888886543
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-06 Score=91.38 Aligned_cols=121 Identities=22% Similarity=0.197 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
|...|..+.+.++-++|..|..++-.++|. +..|+.+|.++...|++++|.+.|..|+.+||+++.+...+|.++...|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 557788888899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHH--HHHHHHhhCCCCHHHHHHHHH----------HHHHHHHHHhhchh
Q 013696 166 KLKESIE--DSEFALRLEPQNQEIKKQLAE----------VKSLYEKEVFQKAS 207 (438)
Q Consensus 166 ~~~eA~~--~~~~al~l~P~~~~~~~~l~~----------a~~~~~ka~~~~~~ 207 (438)
+..-|.. .+..+++++|.|+++|..+++ |..+|.-++.+..+
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9888877 999999999999999765554 44555555555533
No 147
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.49 E-value=1.9e-06 Score=88.56 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=127.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
..|+...|...+.+++..+|++.+. |...-...+...+|+.|-..+.++....|...+|+.-+.....+++.++|+..
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 6799999999999999999998777 55666777889999999999999999999988888888889999999999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----------HHHHHHHHHHHHHhhchhh
Q 013696 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVFQKASK 208 (438)
Q Consensus 140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~ka~~~~~~~ 208 (438)
|+.+++..|++.+.|..+|.++..+++.+.|...|...++..|+....|- ++-+|...+.++...++.+
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999987743 3344555555555554433
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.48 E-value=1.9e-06 Score=88.04 Aligned_cols=140 Identities=9% Similarity=-0.020 Sum_probs=109.3
Q ss_pred CccchHHHHHhhhcCCC----CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH--HHHHHHHHHHhcCHHH
Q 013696 63 RNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQE 135 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p----~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~--~~~la~~~~~l~~~~e 135 (438)
..+++.+.+..+....| +++.. +..+|..+...|++++|+..+.++++..|+ ... ...+....+..++...
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l--~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIAL--KIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 33445566777777666 35555 668999999999999999999999999998 321 2334445555688999
Q ss_pred HHHHHHHHhhcCCccH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHH---------HHHHHHHHHHHHHHH
Q 013696 136 AEDDCTEALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEI---------KKQLAEVKSLYEKEV 202 (438)
Q Consensus 136 A~~~~~~al~l~p~~~--~a~~~lg~a~~~lg~~~eA~~~~~--~al~l~P~~~~~---------~~~l~~a~~~~~ka~ 202 (438)
++..++++++..|+++ ..+..+|.++...|+|++|.++|+ .++++.|++... .++..+|..+|++++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999 888899999999999999999999 688899987654 344556666666665
Q ss_pred hh
Q 013696 203 FQ 204 (438)
Q Consensus 203 ~~ 204 (438)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 43
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=4.8e-07 Score=81.57 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (438)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a 160 (438)
..+..++.+|+.|-..|=+.-|.-.|.+++.+.|. +.++..+|..+...|+|+.|.+.|...+++||.+-.++.++|.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34666899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 161 RKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 161 ~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
++--|+|.-|.+++.+-.+-+|++|-
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999984
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=1.1e-06 Score=93.71 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=137.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696 10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK 88 (438)
Q Consensus 10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~ 88 (438)
..|+.++++..+--++.+.+.++..-.. ++..+...++..| ...+++.|......+-+..|.......|.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---------tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELDA---------TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc---------hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 5678888888877777777777664442 2222334445557 77889999888666666666555555577
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
.+|..|.+.++...|+..|+.+++.+|. ..+|..+|.+|...|+|.-|++.|++|..++|.+..+.|..+.....+|+|
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 8999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCH
Q 013696 168 KESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~ 185 (438)
.+|+..+...+.-.....
T Consensus 647 keald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLER 664 (1238)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998887654433
No 151
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.46 E-value=2.6e-07 Score=90.23 Aligned_cols=48 Identities=8% Similarity=-0.041 Sum_probs=25.5
Q ss_pred cCCCCCCcC-cCCCccchHHHHHhhhcC----CCCChhHHHHHHHHHHHHHhc
Q 013696 51 AKKPSPSGN-SYSRNYDPVSHISSSLMN----EESTPDATSEKELGNECFKQK 98 (438)
Q Consensus 51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~----~p~~~~a~~~~~~g~~~~~~g 98 (438)
.-..+|..+ -.|.|++|+-+..+-|.+ .....++.+++++|++|...|
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 334566666 567777777766555542 222233444555555554443
No 152
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=2.2e-06 Score=80.47 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=88.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
..|+|.+|...|...++..|+... ..+++++|.+++.+|+|.+|...|..+++-.|+ +.+++-+|.|...+|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 679999999999999999988743 445889999999999999999999999999887 799999999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHH
Q 013696 135 EAEDDCTEALNLDDRYIKAYSR 156 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~ 156 (438)
+|-..++++++..|+...+...
T Consensus 233 ~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999998776543
No 153
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.44 E-value=5.2e-06 Score=84.80 Aligned_cols=127 Identities=9% Similarity=-0.020 Sum_probs=112.8
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhcCHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~--~~~~~la~~~~~l~~~~eA 136 (438)
+..|++..|...+.++....|..... +...|..+...|+++.|..+|.++.+..|+. .+...++.+++..|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 47799999999999999988765555 5578999999999999999999999998883 4555579999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
...++..++..|+++.++..++.++...|++++|...+.+.++....++..
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999999999999999999999886655443
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=3.4e-07 Score=88.70 Aligned_cols=172 Identities=14% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCC--C--ChhHHH
Q 013696 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEE--S--TPDATS 86 (438)
Q Consensus 11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p--~--~~~a~~ 86 (438)
...+.++..++|+++...+.+...-... .+........+...+.+|..+++++|+.+|.+++.+.- + ...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~---~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEK---LGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3456666777787777765554322210 00011112223344555655688899999999987431 1 223556
Q ss_pred HHHHHHHHHHh-ccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cH-
Q 013696 87 EKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YI- 151 (438)
Q Consensus 87 ~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~- 151 (438)
+..+|..|... |++++|+++|.+|+.+... ..++.+.|.++..+|+|++|+..|+++....-+ .+
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 78899999998 9999999999999987421 567788899999999999999999998864321 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
..++..+.|+...|++..|...+++....+|...
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 3467788899999999999999999999998654
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.40 E-value=6.7e-06 Score=79.84 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=60.1
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc--cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA 136 (438)
.+++++.|...+...-+.+++..-. ....+++.+..| +|.+|.-.|+......+. +..+..+|.|++.+|+|++|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILT--QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4455555555555544444332222 122333333333 355555555555444433 55555555555555555555
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~-~eA~~~~~~al~l~P~~~~ 186 (438)
+..+..++..+|.++.++.+++.+...+|+. +.+.+++.+....+|.++.
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 5555555555555555555555555555555 3344455555555555543
No 156
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.38 E-value=8.4e-06 Score=83.90 Aligned_cols=126 Identities=11% Similarity=-0.017 Sum_probs=111.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
.+++.++|+.+++++|+..|..... |..+|.++-.+++.+.|...|..+++..|+ ..+|..++..-.+.|+.-.|..
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl--~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKL--WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHH--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 6788899999999999999888888 668899999999999999999999999998 8888888888888889999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.++++...+|.++..|.-.-.+-...|+.+.|.....+||+-.|++...
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 9999999999998888888888888899999999999999988887654
No 157
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.7e-06 Score=84.87 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=100.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE 135 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~e 135 (438)
..|+|++|.....+.+...|+...+ ++..-.++++.++|++|+.. ++.++. ....+..|+|.++++..++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 6789999999999999999999998 55778889999999999844 444542 3344789999999999999
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
|+.+++ .+++.+......+|.+++++|+|++|+..|+..++-+-++.+
T Consensus 98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 999999 667788889999999999999999999999999777655443
No 158
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.37 E-value=1.8e-07 Score=89.54 Aligned_cols=97 Identities=31% Similarity=0.521 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.+..+.-.+..|.++.||+.|..+|.++|. +.+|..+|.+++++++...|+.+|..|+.++|+..+.|-.+|.++..+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 566777788999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 013696 166 KLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~ 183 (438)
++.+|..+|..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999999754
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.35 E-value=9.9e-07 Score=67.80 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccC---CC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
+..+.++|.+|+..|+|++|+.+|++++.+. ++ +.++.++|.||..+|++++|+.++++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3447899999999999999999999999862 22 678999999999999999999999999875
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.35 E-value=3e-06 Score=82.91 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=107.5
Q ss_pred cCCCCCCcC-cCCCccchHHHHHhhhcCCCCC----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC----CC---HH
Q 013696 51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---AV 118 (438)
Q Consensus 51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~----p~---~~ 118 (438)
.+..+|..| .+|+|+.||...+.-|.+.... .+-.++-++|+++.-.|+++.|+++|.+.+.+. .. +.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566777776 8999999999988877764332 222336699999999999999999999877653 22 67
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
..+.+|..|.-+.+|+.||.++.+-+.+.. ....+++.+|.++..+|..+.|+-+.+..+++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 789999999999999999999998876643 346789999999999999999999988888765
No 161
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.31 E-value=1.6e-05 Score=80.98 Aligned_cols=129 Identities=10% Similarity=0.024 Sum_probs=106.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCH-HH-HHHHHHHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA-VA-YANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~-~~-~~~la~~~~~l~~~~eA~ 137 (438)
-.|+|+.|.....+.-...+ .+.. .+...+......|+++.|..+|.++.+.+|+. .+ ....+..++..|+++.|+
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~-~p~l-~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE-QPVV-NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc-chHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 56899999987777655432 2333 23444666699999999999999999999983 23 334589999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 190 (438)
..+++++..+|+++.++..++.+|...|++++|+..+.+..+..+.++....+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~ 226 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM 226 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999888876654443
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=1.8e-05 Score=68.64 Aligned_cols=90 Identities=18% Similarity=0.056 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~ 159 (438)
.+......+..+++..+...+...+.-+|+ ..+.+.+|.+++..|+|++|+..|..++...|+. ..+.+++|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 445555556789999999999999999887 5678889999999999999999999999987655 468999999
Q ss_pred HHHHcCCHHHHHHHHHH
Q 013696 160 ARKELGKLKESIEDSEF 176 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~ 176 (438)
++...|+|++|+..++.
T Consensus 94 ~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 99999999999999976
No 163
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.25 E-value=7.2e-06 Score=70.05 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=83.3
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 132 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~- 132 (438)
+..|+|.+|+..++.+....|....+ .+...+|.+|++.|+|++|+..|.+-|+++|. ..+++.+|++++.+..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 46789999999999999988766432 33679999999999999999999999999997 7889999999999887
Q ss_pred --------------HHHHHHHHHHHhhcCCccHHH
Q 013696 133 --------------FQEAEDDCTEALNLDDRYIKA 153 (438)
Q Consensus 133 --------------~~eA~~~~~~al~l~p~~~~a 153 (438)
...|..+|.+.+...|++..+
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999987543
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.3e-05 Score=76.16 Aligned_cols=106 Identities=19% Similarity=0.116 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 013696 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK---LKESIEDSE 175 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~---~~eA~~~~~ 175 (438)
.+.-+.-.+.-++.+|+ +.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++...+ -.++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 56677778888999999 99999999999999999999999999999999999999999999887654 469999999
Q ss_pred HHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696 176 FALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 176 ~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~ 205 (438)
++++++|.|..+ .+++.+|...++.-+...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 999999999987 455566666666555443
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=2e-05 Score=75.93 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=92.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~~~~~~~la~~~~~l~~~~eA~~ 138 (438)
...+|..|+..++-.+..+.... ......+|.|+|..|+|++|+..|+-+...+ +.+..+.|+|-|++.+|.|.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 67889999999988876653322 2224578999999999999999999988854 338899999999999999999877
Q ss_pred HHHHHh--------------hcCC------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 139 DCTEAL--------------NLDD------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 139 ~~~~al--------------~l~p------------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
...+|- +++. +...-...+|.+++..-.|++|++.|.++|.-+|....
T Consensus 113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 655542 2221 11223445667777777888888888888888776543
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=5.2e-06 Score=75.00 Aligned_cols=100 Identities=20% Similarity=0.127 Sum_probs=93.1
Q ss_pred cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696 51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128 (438)
Q Consensus 51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~ 128 (438)
.+...|..| +.|-..-|.-.|.+++.+.|..+.+ ++.+|..+...|+|+.|.+.|+..++++|. ..++.|+|..++
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 345667778 8899999999999999999999999 779999999999999999999999999999 889999999999
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIK 152 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~ 152 (438)
.-|+|.-|.+++.+-.+-||++|-
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999999984
No 167
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.23 E-value=2e-05 Score=82.08 Aligned_cols=70 Identities=23% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.+++.+|..|...|++++|+.+.++||...|..+..|+..|.++...|++.+|..+++.|-.+++.+.-+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 4668899999999999999999999999999999999999999999999999999999999999988655
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=3.1e-06 Score=82.02 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=95.8
Q ss_pred CCCCcC-cCCCccchHHHHHhhhcCC----CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----CC--HHHHH
Q 013696 54 PSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT--AVAYA 121 (438)
Q Consensus 54 ~~~~~y-~~g~~~eAi~~~~~al~~~----p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~--~~~~~ 121 (438)
..|..| ..+++++|...|.++.... .....+..+...|.+| +..++.+|+.+|.+++.+. +. +.++.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456 6688999999999886533 1222344455555555 4559999999999999974 22 78899
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 122 NRAMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 122 ~la~~~~~l-~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
++|.+|... |++++|+.+|.+|+.+... -...+...|.++..+|+|++|+..|+++....-.
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 999999999 9999999999999987321 2456788999999999999999999999876543
No 169
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=1.1e-05 Score=67.11 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~ 134 (438)
..|+.+.|++.|.++|.+.|..+.+ |++.+..+.-+|+.++|+..+++++++... ..+|..+|..|..+|+-+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 6689999999999999999999988 789999999999999999999999998743 577999999999999999
Q ss_pred HHHHHHHHHhhcCCccH
Q 013696 135 EAEDDCTEALNLDDRYI 151 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~ 151 (438)
.|..+|..|-++.....
T Consensus 133 ~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 133 AARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHhHHHHHHhCCHHH
Confidence 99999999998876553
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.18 E-value=9.9e-06 Score=71.47 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=69.6
Q ss_pred ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc----------cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----------~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
|+.|.+.++.....+|.+.++ +.+.|.++..+. -+++|+.-|++||.++|+ ..+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 567888999999999999888 668888876653 467899999999999999 9999999999988764
Q ss_pred -----------HHHHHHHHHHHhhcCCccHH
Q 013696 133 -----------FQEAEDDCTEALNLDDRYIK 152 (438)
Q Consensus 133 -----------~~eA~~~~~~al~l~p~~~~ 152 (438)
|++|..+|++|...+|++..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 88899999999999998853
No 171
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.12 E-value=2e-05 Score=76.58 Aligned_cols=130 Identities=14% Similarity=0.041 Sum_probs=98.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--CHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA 136 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--~~~eA 136 (438)
..|++++|+..+.+. .+.++.+ ..-.+|.+.++++.|.+.+..+-+.+.+ ..+...-|.+.+..| .+.+|
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~a--l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLA--LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHH--HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HcCCHHHHHHHHHcc-----CcccHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 568888888777654 3445533 6678899999999999999999888877 333344444555555 69999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
...|+......+..+..+..+|.++..+|+|++|...+..++..+|.+++...++.-+-.
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999888888899999999999999999999999999999999999987665544333
No 172
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=4.4e-05 Score=72.15 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=111.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
...+|.+||+++..-....|.+..+ +-.+|.||+...+|..|..||.+.-.+.|. ....+.-|..+++.+.|..|+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567999999999999999888888 459999999999999999999999999999 6666666788888888877766
Q ss_pred HHHHHh----------------hcC--------------C--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 139 DCTEAL----------------NLD--------------D--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 139 ~~~~al----------------~l~--------------p--~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
...... ... | +.+....+.|.+.++-|+|++|++-|+.+++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 443332 111 2 34566788999999999999999999999999877665
Q ss_pred H----------HHHHHHHHHHHHHHHhhc
Q 013696 187 I----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 187 ~----------~~~l~~a~~~~~ka~~~~ 205 (438)
. .+++..|+....+.++..
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 4 455556665555544443
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=3.7e-05 Score=64.37 Aligned_cols=86 Identities=22% Similarity=0.191 Sum_probs=74.2
Q ss_pred cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~ 134 (438)
..|+.++|+.+|++++........ ...+..+|..+...|++++|+..+++++...|+ ..+...+++++..+|+++
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 689999999999999997544332 345779999999999999999999999998886 556777899999999999
Q ss_pred HHHHHHHHHhh
Q 013696 135 EAEDDCTEALN 145 (438)
Q Consensus 135 eA~~~~~~al~ 145 (438)
+|+..+-.++.
T Consensus 93 eAl~~~l~~la 103 (120)
T PF12688_consen 93 EALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988874
No 174
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00011 Score=75.25 Aligned_cols=146 Identities=18% Similarity=0.116 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696 20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK 98 (438)
Q Consensus 20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g 98 (438)
+.++++++..++.+... +.++.+++.-..+. .+++|++|+...+.-....-. ....+..+.|.|+.+
T Consensus 26 ~e~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEYRLN 93 (652)
T ss_pred hHHHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHHHcc
Confidence 46677777666666443 23344454444444 778888888655544332211 111368899999999
Q ss_pred cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC------------------------------
Q 013696 99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------------------------------ 147 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~------------------------------ 147 (438)
+.++|+.+++ .+++. ..+...+|.+++++++|++|+..|+..++.+
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9999999998 34454 5577778999999999999999998886443
Q ss_pred C-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 148 D-RYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 148 p-~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
| +....+|+.|.++...|+|.+|++.+++++++
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1 13456899999999999999999999999655
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.00028 Score=62.59 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=94.1
Q ss_pred hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA-LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
+.....+.+.+.|. ....+.+|+.+...|+|.+|..+|.+++. +.-+ +..+..++.+.+..+++..|...++...
T Consensus 75 ~~Rea~~~~~~ApT---vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 75 HLREATEELAIAPT---VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHhhchh---HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 33334444444443 33366899999999999999999999987 3444 7888899999999999999999999999
Q ss_pred hcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 145 NLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 145 ~l~p~--~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
+.+|. .+.....+|.++..+|++.+|...|+.++...|+-.
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 98874 467788889999999999999999999999999753
No 176
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.97 E-value=0.00015 Score=81.83 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=74.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PTAVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~~~~~~~la~~~~~l~~~~eA~ 137 (438)
..|++++|+..|....... -.+....|..+...|.+.|++++|...+..+.+.. |+...|..+..+|.+.|++++|+
T Consensus 626 k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 5566677777766665532 11223335566666777777777777777766643 44666677777777777777777
Q ss_pred HHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 138 DDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 138 ~~~~~al~l--~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
..|+..... .| +...|..+..+|...|++++|++.|++...
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766543 33 355667777777777777777777776654
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.93 E-value=8e-06 Score=52.28 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888885
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.93 E-value=1.8e-05 Score=50.36 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 179
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.00025 Score=73.98 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 162 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~ 162 (438)
.+.++.++..|-..|+|++|+.+.++||...|. +..|...|.+|-+.|++.+|..+.+.|..+|..+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 456789999999999999999999999999999 9999999999999999999999999999999999888888899999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 013696 163 ELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 163 ~lg~~~eA~~~~~~al~l~ 181 (438)
+.|++++|...+..-.+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999987766555
No 180
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.92 E-value=1.7e-05 Score=50.53 Aligned_cols=34 Identities=38% Similarity=0.473 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~ 150 (438)
+.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888887764
No 181
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.92 E-value=1e-05 Score=81.02 Aligned_cols=103 Identities=19% Similarity=0.118 Sum_probs=94.6
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
+..++|+.|+..|.++|.++|+.....+ +++.++.+.++|..|+....++|+++|. ..+|+.+|.++..++.|.+|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~a--nRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFA--NRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeec--hhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 3668899999999999999999887744 8899999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKE 163 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~ 163 (438)
.+|+....+.|+.+.+...+..|-..
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 99999999999999987777766554
No 182
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.5e-05 Score=70.62 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=79.7
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|-...|..|+.+|.++|.++|..+.- +.+.+.++++..+++.+.....++++++|+ ..+++.+|.+.+....|.+|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 35667999999999999999987766 669999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhc
Q 013696 138 DDCTEALNL 146 (438)
Q Consensus 138 ~~~~~al~l 146 (438)
..+.+|..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999999655
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.90 E-value=0.00065 Score=63.48 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=113.1
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc--
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-- 131 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~-- 131 (438)
+..|++.+|+..|+......|..+.+ .+...++.++++.++|++|+...++-+.+.|. ..+++.+|.+++..=
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 36799999999999999988877553 23679999999999999999999999999987 677899999987643
Q ss_pred ------CHHHHHHHHHHHhhcCCccHH---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 132 ------RFQEAEDDCTEALNLDDRYIK---------------AY--SRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 132 ------~~~eA~~~~~~al~l~p~~~~---------------a~--~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
--.+|+..+...+...|+..- +. ...|.-|.+.|.|-.|+.-++.+++-.|+.....
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 245788999999999987521 11 2356778899999999999999999998887766
Q ss_pred HHHHHHHHHHH
Q 013696 189 KQLAEVKSLYE 199 (438)
Q Consensus 189 ~~l~~a~~~~~ 199 (438)
..+....+.|.
T Consensus 205 eaL~~l~eaY~ 215 (254)
T COG4105 205 EALARLEEAYY 215 (254)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00038 Score=64.89 Aligned_cols=125 Identities=23% Similarity=0.234 Sum_probs=107.6
Q ss_pred cCCCccchHHHHHhhhcCC-CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc----cCCC---HHHHHHHHHHHHHhc
Q 013696 60 SYSRNYDPVSHISSSLMNE-ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLR 131 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~-p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~l~ 131 (438)
..+.|.-....+.+.++.+ |..+.. ...+|...++.|+.+.|-.+|++.-+ ++.. .....|.+.+|+..+
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L--~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQL--LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 5577888899999999977 444445 55899999999999999999985443 3322 566888899999999
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
+|.+|...|++++..||.++.+..+.|.|+.-+|+...|+...+.++...|...-
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 9999999999999999999999999999999999999999999999999997643
No 185
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.88 E-value=0.00026 Score=80.02 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=65.3
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~ 137 (438)
..|++++|...|.+...... .+....|..+...|.+.|++++|+..|...... .|+...|..+..+|.+.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666666554321 122233555556666666666666666655443 344555666666666666666666
Q ss_pred HHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 138 DDCTEALN----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 138 ~~~~~al~----l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+.+..... +.|+ ...|..+-.+|.+.|++++|.+.|+...+.+
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 66665543 2232 3445555555556666666666666555544
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=2.7e-05 Score=52.91 Aligned_cols=40 Identities=35% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg 158 (438)
++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555555555555555555555555555555554
No 187
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.86 E-value=0.00019 Score=78.50 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=109.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE 89 (438)
Q Consensus 11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~ 89 (438)
.|-+.+...+.++++.+-.++-.+ . +...+..+..+| ..|+.++|++.|++..... -.++...+..
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~-~-----------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ 431 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPR-K-----------NLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLA 431 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC-C-----------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHH
Confidence 344555555666666655443221 0 122344455556 6778888888887766533 2233444666
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696 90 LGNECFKQKKFKEAIDCYSRSIAL---SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (438)
Q Consensus 90 ~g~~~~~~g~y~~Ai~~y~~al~~---~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~ 166 (438)
+-..+.+.|.+++|..+|....+. .|+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC
Confidence 677777778888888777777642 355666777777777777777777776653 2333 34557777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHH
Q 013696 167 LKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKE 201 (438)
Q Consensus 167 ~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka 201 (438)
++.|...+++++.+.|++... .+++++|.+.++..
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 777777777777777765322 34555666655543
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=7.6e-05 Score=75.32 Aligned_cols=101 Identities=30% Similarity=0.252 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATARK 162 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~---~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~ 162 (438)
++..|+-.+-.+....|+..|.+++...|. ...|.|++.++++.+ +--.|+.+|..|++++|...++|++++.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 667888888888899999999999999999 899999999998864 7778999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 163 ELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 163 ~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.++++.+|+++...+.-..|.+...
T Consensus 457 el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 457 ELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHhhHHHhhhhHHHHhhcCchhhhh
Confidence 9999999999998887778866543
No 189
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=4.8e-05 Score=48.21 Aligned_cols=33 Identities=39% Similarity=0.483 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
.+|+.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776654
No 190
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.81 E-value=0.00092 Score=59.33 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=55.3
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHH-HHHHhccHHHHHHHHHHHhccCC---C-HHHHHHHHHHHHHhcCHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~-~~~~~g~y~~Ai~~y~~al~~~p---~-~~~~~~la~~~~~l~~~~eA 136 (438)
+++..++..+..++...+....... ..+. ++...|+++.|+.+|.+++..+| . ...+..++..+...+++..|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 3344444444444444433322211 2222 44455555555555555544443 1 33334444444444455555
Q ss_pred HHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 137 EDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 137 ~~~~~~al~l~p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
+..+.+++...+. ....+..++.++...+++..|+..+..++...|.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 5555555555544 3444555555555555555555555555555444
No 191
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.78 E-value=0.00015 Score=79.17 Aligned_cols=180 Identities=13% Similarity=-0.015 Sum_probs=128.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696 13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG 91 (438)
Q Consensus 13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g 91 (438)
-..+..++.++++.+-....++.... .+......+...| +.|++++|...|++... | + ...|..+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~--------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d--~~t~n~lI 398 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFP--------LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-N--LISWNALI 398 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCC--------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-C--eeeHHHHH
Confidence 34445566777766655554443311 1122333445556 88999999999998754 2 2 33488999
Q ss_pred HHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCH
Q 013696 92 NECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIKAYSRRATARKELGKL 167 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--~~~~a~~~lg~a~~~lg~~ 167 (438)
..|.+.|++++|++.|.+.... .|+...|..+-.++.+.|.+++|...|+...+..+ .+...|..+..+|.+.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 9999999999999999998874 47788899999999999999999999999975322 2456788899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHhhch
Q 013696 168 KESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~ka~~~~~ 206 (438)
++|.+.+++. ...|+.... .++++.+...+++.+...+
T Consensus 479 ~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 479 DEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 9999998764 344543211 3445566666666655554
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.78 E-value=0.00069 Score=60.16 Aligned_cols=124 Identities=27% Similarity=0.342 Sum_probs=111.2
Q ss_pred cCCCccchHHHHHhhhcCCCC-ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA 136 (438)
..|+++.|+..|.+++...|. ......+...+..+...+++..|+..+.+++...+. ...+.+++.++...+++..|
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 889999999999999886663 334444667777788999999999999999999987 68899999999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
+..+..++...|.....+..++..+...|.+.+|...+.+++...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999998888899999988888899999999999999997
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=5.6e-05 Score=51.32 Aligned_cols=43 Identities=30% Similarity=0.321 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013696 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193 (438)
Q Consensus 151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 193 (438)
+.+|+.+|.+|..+|++++|+..|+++++.+|++++++..+.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999877654
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.75 E-value=0.00054 Score=60.82 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=103.1
Q ss_pred CCCCcC-cCCCccchHHHHHhhhc-CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHH
Q 013696 54 PSPSGN-SYSRNYDPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYL 128 (438)
Q Consensus 54 ~~~~~y-~~g~~~eAi~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~ 128 (438)
+++.+. ..|++.+|..+|.+++. +.-+++.. +..+++..+..+++..|...++...+.+|. +.....+|.+|-
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~--lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAM--LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH--HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 344444 88999999999999987 33344444 779999999999999999999999999987 777788899999
Q ss_pred HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
.+|++..|+..|+.++...|+ +.+..+.|..+..+|+..+|..-+..+.
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999999998875 6777888999999999988877665554
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.69 E-value=0.0015 Score=61.02 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH---HHHHH
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR 156 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~---~a~~~ 156 (438)
+..|+..|...++.|+|.+|+..|+......|. ..+...++.++++.++|++|+...++-+.+.|+++ .++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 455899999999999999999999999999887 78899999999999999999999999999999775 46888
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH
Q 013696 157 RATARKELG--------KLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 157 lg~a~~~lg--------~~~eA~~~~~~al~l~P~~~ 185 (438)
+|.++...= -..+|+..|...+.-.|+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 898876542 24689999999999999875
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=8.7e-05 Score=46.97 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~ 150 (438)
.+|+.+|.+|+.+|+|++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777654
No 197
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00028 Score=67.79 Aligned_cols=98 Identities=26% Similarity=0.323 Sum_probs=84.6
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCC--hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~ 128 (438)
+.-|+.| ...+|..|+..|.+.|+..-.+ ..+..|.+++.+.+..|+|..||....+++.++|. ..+|+.-|.|++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 4455555 7889999999999999865333 33555889999999999999999999999999999 999999999999
Q ss_pred HhcCHHHHHHHHHHHhhcCCcc
Q 013696 129 KLRRFQEAEDDCTEALNLDDRY 150 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l~p~~ 150 (438)
.+.++.+|..+|+..++++...
T Consensus 165 eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999998876544
No 198
>PLN03077 Protein ECB2; Provisional
Probab=97.62 E-value=0.00061 Score=76.32 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIKAYSRRATARK 162 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--~~~~a~~~lg~a~~ 162 (438)
|..+...|.+.|+.++|+..|++..+. .|+...|..+-.++.+.|.+++|...|+......+ -+...|..+..++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 444444555555555555555544432 23333344443444444555555555544442111 12334444444455
Q ss_pred HcCCHHHHHHHHHH
Q 013696 163 ELGKLKESIEDSEF 176 (438)
Q Consensus 163 ~lg~~~eA~~~~~~ 176 (438)
+.|++++|.+.+++
T Consensus 637 r~G~~~eA~~~~~~ 650 (857)
T PLN03077 637 RAGKLTEAYNFINK 650 (857)
T ss_pred hCCCHHHHHHHHHH
Confidence 55555555444443
No 199
>PLN03077 Protein ECB2; Provisional
Probab=97.61 E-value=0.0006 Score=76.39 Aligned_cols=162 Identities=8% Similarity=0.046 Sum_probs=123.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcC--CCCChhHHHH
Q 013696 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMN--EESTPDATSE 87 (438)
Q Consensus 11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~--~p~~~~a~~~ 87 (438)
.|-+.+...++++++.+..+.. .+ +...+..+-.+| ..|+.++|+..|++.... .|+.. .+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~ 592 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV---TF 592 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc---cH
Confidence 4556666677777777655442 11 222444555667 889999999999987763 34433 35
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~---~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l 164 (438)
..+-..|.+.|.+++|..+|..... +.|+...|..+..+|.+.|++++|.+.+++. .+.|+ +..|..+-.++...
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~ 670 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHc
Confidence 5666789999999999999999884 3577888999999999999999999999875 35565 56777777788889
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696 165 GKLKESIEDSEFALRLEPQNQEIKKQ 190 (438)
Q Consensus 165 g~~~eA~~~~~~al~l~P~~~~~~~~ 190 (438)
|+.+.|....+++++++|++....-.
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHH
Confidence 99999999999999999998766433
No 200
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.60 E-value=0.0012 Score=66.65 Aligned_cols=105 Identities=22% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
..+...++|+.|+..+++..+.+|.. ...++.+++..++..+|+....+++...|.+...+...|..+...|+++.|+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 34455689999999999999999873 3447889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 172 EDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
...+++..+.|++...|..+.++....
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 999999999999999998888777543
No 201
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.59 E-value=0.00018 Score=69.81 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCCcC-cCCCccchHHHHHhhhcCCCCCh----hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------HH
Q 013696 55 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AV 118 (438)
Q Consensus 55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------~~ 118 (438)
+|.++ .++.|+++++.|+.+++...++. +...+..+|..|-...+|++|+-+..+|.++... ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 56666 78899999999999998653332 3344678999999999999999999999887422 46
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
+++.++.++..+|+...|.++|+.+.++. +.+.....-+|.+|...|+.+.|..-|+.|+..-..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 78889999999999999999999998764 345566788999999999999999999999877543
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.59 E-value=5.5e-05 Score=48.34 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=23.8
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 106 ~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
+|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36777777777 777777777777777777765
No 203
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00062 Score=62.88 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=85.7
Q ss_pred CCCCCc-CcCCCccchHHHHHhhhc--------CCCCChhH--------HHHHHHHHHHHHhccHHHHHHHHHHHhccCC
Q 013696 53 KPSPSG-NSYSRNYDPVSHISSSLM--------NEESTPDA--------TSEKELGNECFKQKKFKEAIDCYSRSIALSP 115 (438)
Q Consensus 53 ~~~~~~-y~~g~~~eAi~~~~~al~--------~~p~~~~a--------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p 115 (438)
..-|+. |..|+|.+|...|..|+. ..|..++- -.+.+...|+...|+|-+++++....+...|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 344444 699999999999998865 23444331 1156889999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696 116 T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155 (438)
Q Consensus 116 ~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~ 155 (438)
. ..+|+.+|.++...-+..+|..++..++.++|.-..+..
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9 999999999999999999999999999999998765543
No 204
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.55 E-value=0.00076 Score=75.88 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=99.8
Q ss_pred cCCCccchHHHHHhhhcCCCCCh---hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK 129 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~ 129 (438)
..|++++|...+++++...+... .+..+..+|..+...|++++|...+.+++..... ..++.++|.+++.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999999988544322 2334678899999999999999999999976432 4567889999999
Q ss_pred hcCHHHHHHHHHHHhhcCCc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 130 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 130 l~~~~eA~~~~~~al~l~p~--------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
.|++++|...+.+++.+... ....+..+|.++...|++++|...+.+++.+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 99999999999999876321 233466789999999999999999999988743
No 205
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0032 Score=58.98 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 98 KKFKEAIDCYSRSIAL-SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 98 g~y~~Ai~~y~~al~~-~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
+++.+|.-.|+..-+. .|.+......+.|++.+++|++|...++.|+..+++++..+.++-.+-..+|+-.++...+-.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3466666666665553 334666666666666666666666666666666666666666666666666666555554444
Q ss_pred HHhh-CCCCH
Q 013696 177 ALRL-EPQNQ 185 (438)
Q Consensus 177 al~l-~P~~~ 185 (438)
-++. .|..+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 3333 34443
No 206
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.53 E-value=0.00017 Score=73.70 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
+.-|....-.|+...|+.|+.+|+...|. -....++|.++++-+-...|-..+.+++.+....+-.++.+|.++..+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 34444455689999999999999999998 6678999999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a 194 (438)
+.+.|++.|+.|+.++|+++.....+..+
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999987776544
No 207
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.0026 Score=63.85 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=125.4
Q ss_pred cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~ 137 (438)
...+.+.+...|+.+|.+-|+..- +-.|...|....++.+...|-..+..||...|...++-..-..-+++++++.+.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 457889999999999998886533 444778888889999999999999999999999777766667778899999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-----------HHHHHHHHHHHHHHHhhc
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-QNQEI-----------KKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P-~~~~~-----------~~~l~~a~~~~~ka~~~~ 205 (438)
..|++-|..+|.+..+|...|..-..+|+.+.|...|+-|+.... +.+++ .++++.+..+|++.+...
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999886643 22333 678899999999887765
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.47 E-value=0.0012 Score=68.48 Aligned_cols=104 Identities=14% Similarity=0.032 Sum_probs=81.8
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA 136 (438)
.....|...+.......|+.... +...|..+...|+.++|++.|++++..... ...++.+|.|+..+.+|++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34566778888888888876665 668899999999999999999998864433 56688899999999999999
Q ss_pred HHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCH
Q 013696 137 EDDCTEALNLDDR-YIKAYSRRATARKELGKL 167 (438)
Q Consensus 137 ~~~~~~al~l~p~-~~~a~~~lg~a~~~lg~~ 167 (438)
..++.+..+.+.- ..-..|..|.|+..+|+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999886543 233456678888888887
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0027 Score=58.33 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=119.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHH--HhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCCCChh----HH
Q 013696 12 FQGFLNDLQDWDLSLNEKDKK--MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPD----AT 85 (438)
Q Consensus 12 l~~~~~~l~~we~~i~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~----a~ 85 (438)
-.+.++--++|..+=....+. +.... +........+...+.+|+.++..+|+.++++++.+.-+... +.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~-----~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKA-----GSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 356777778888764433222 22111 01111222345566778888999999999999997654432 33
Q ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHhccCCC--H-----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH------
Q 013696 86 SEKELGNECFKQ-KKFKEAIDCYSRSIALSPT--A-----VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI------ 151 (438)
Q Consensus 86 ~~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~--~-----~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~------ 151 (438)
.+..+|..|-.. .++++||.+|+.+-+.... . .++...|..-..+++|.+|+..|++.....-++.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 466888888777 8999999999999887654 2 2334445555668899999999999887655442
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 152 K-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 152 ~-a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
+ .++.-|.|+...++.-.+...+++...++|.....
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 2 35566788888899999999999999999987554
No 210
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=7e-05 Score=72.11 Aligned_cols=89 Identities=21% Similarity=0.141 Sum_probs=82.1
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
|..|.++.|++.|..++.++|..... +..+|.++.+.++...|+..|..++.++|+ +.-|-.+|.+...+|+|++|-
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 57788999999999999999988877 559999999999999999999999999999 777888999999999999999
Q ss_pred HHHHHHhhcCCc
Q 013696 138 DDCTEALNLDDR 149 (438)
Q Consensus 138 ~~~~~al~l~p~ 149 (438)
.++..+.+++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 999999988754
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.26 E-value=0.0073 Score=52.09 Aligned_cols=91 Identities=24% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
..|......|+...++..+.+++.+... ..+...++..+...|++++|+..+.+++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3455556677778888888888877422 13445567788889999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987743
No 212
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.004 Score=58.38 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=99.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh----cCHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE 135 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l----~~~~e 135 (438)
..|++++|......... .++.+ .--+++.++.+.+-|.....+..+++.+ ..+..+|.+|.++ +.+..
T Consensus 120 ~~~~~deAl~~~~~~~~-----lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGEN-----LEAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred cCCChHHHHHHHhccch-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence 77889999988877433 33544 4467888899999999999998888765 2233344444332 36888
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 195 (438)
|.-.|+..-...|..+......+.|+..+|+|++|...++.+|.-++++++.+.++--+.
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 999999998877788999999999999999999999999999999999998876654433
No 213
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.23 E-value=0.0061 Score=50.15 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=70.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccC---CC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-------CC
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL-------DD 148 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~---p~----------~~~~~~la~~~~~l~~~~eA~~~~~~al~l-------~p 148 (438)
..|.-.+..|-|++|...|++++... |. +.++..++.++..+|+|++++....++|.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 34555667889999999999999874 32 456788999999999999999888888744 34
Q ss_pred cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 149 RY----IKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 149 ~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
+. +.+.+++|.++..+|+.++|+..|+.+-..
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 456788999999999999999999987643
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.21 E-value=0.00059 Score=43.14 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 215
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0005 Score=66.64 Aligned_cols=110 Identities=28% Similarity=0.363 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCC---C-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p---~-----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
.++.|+..++.++|..|..-|.+++..-. . ...+.|++.|-++.+.+..|+..+..++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 56788899999999999999988876421 0 346778999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 147 ~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
++...++++++|.++..+.++++|++++..+....|++..+...+..+..
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988666655544
No 216
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.018 Score=58.06 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=81.7
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
+++..|...+++||..+-.+... |...+.+-++.+....|-..+.+|+.+-|. -..|+..-..-..+|+...|.+.|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34445555555555555444443 334555555555555555555555555555 444544444445555555555555
Q ss_pred HHHhhcCCc--------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-
Q 013696 141 TEALNLDDR--------------------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI- 187 (438)
Q Consensus 141 ~~al~l~p~--------------------------------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~- 187 (438)
++-+...|+ .+.+|.+.+.--...|+...|...|++|+..-.++..+
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 555555443 24556666666667777777777777777766665544
Q ss_pred ------------HHHHHHHHHHHHHHHhhchhh
Q 013696 188 ------------KKQLAEVKSLYEKEVFQKASK 208 (438)
Q Consensus 188 ------------~~~l~~a~~~~~ka~~~~~~~ 208 (438)
..+++.|.-.|.=|+..-+++
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445556666666666554443
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.13 E-value=0.0058 Score=60.21 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=80.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..|++++|.+....+++..-+ +.. ..=.-..+-+++..=++..++.+...|+ +.++..+|..|++.+.|.+|..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D-~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWD-PRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccC-hhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 667777888777777765422 222 1112334566777777777777777777 7777888888888888888888
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
+++.|+...|+ ...|..+|.++.++|+..+|.+.++.++.+
T Consensus 350 ~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888777664 455677788888888888888777777744
No 218
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.00047 Score=69.25 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=68.2
Q ss_pred CcCCCccchHHHHHhhh-cCC------CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-c--------CCC------
Q 013696 59 NSYSRNYDPVSHISSSL-MNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA-L--------SPT------ 116 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al-~~~------p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-~--------~p~------ 116 (438)
|-.|+|..|...+...- ... |.......|+++|.+++..|.|.-++.+|.+|++ . .|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 45677777777664431 112 2222344467888888888888888888888885 1 111
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696 117 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 162 (438)
Q Consensus 117 ----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~ 162 (438)
..+.||.|..|++.|+.-.|.++|.++.+....+|..|.|+|.|..
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3566677777777777777777777777776677777777776654
No 219
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.10 E-value=0.0036 Score=44.23 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 190 (438)
..+|.+|.++.++|+|.+|..+.+.+|+++|+|.++..-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 357888899999999999999999999999999877543
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.09 E-value=0.00074 Score=42.66 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~ 149 (438)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777764
No 221
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.08 E-value=0.0065 Score=68.36 Aligned_cols=122 Identities=14% Similarity=0.014 Sum_probs=97.4
Q ss_pred cCCCccchHHHHHhhhcCCCC-------ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 126 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~-------~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~ 126 (438)
..|++++|...+..+....+. .........+|..++..|++++|..++.+++...+. ..++..+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 678999999999887653221 112333456788999999999999999999986544 3467889999
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 127 YLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+...|++++|...+.+++..... ...++..+|.++...|++++|...+++++.+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999876332 13467788999999999999999999999873
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0017 Score=62.90 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=73.4
Q ss_pred HHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696 93 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170 (438)
Q Consensus 93 ~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA 170 (438)
.+....+|..|+..++-.+..+.. ...-..+|.|++++|+|++|+..|+.+..-+.-+.+.+.++|.+++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 345678899999999888877655 466777899999999999999999999998878889999999999999999999
Q ss_pred HHHHHHH
Q 013696 171 IEDSEFA 177 (438)
Q Consensus 171 ~~~~~~a 177 (438)
...-.++
T Consensus 111 ~~~~~ka 117 (557)
T KOG3785|consen 111 KSIAEKA 117 (557)
T ss_pred HHHHhhC
Confidence 8876554
No 223
>PRK10941 hypothetical protein; Provisional
Probab=97.06 E-value=0.006 Score=58.43 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.....|+=.+|...++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|..+++..++..|+++.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 46678888999999999999999999999999999999999999999999999999999999999999876
No 224
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.04 E-value=0.005 Score=59.99 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=114.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHH----HhhhcCCCCChhHHHH
Q 013696 13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHI----SSSLMNEESTPDATSE 87 (438)
Q Consensus 13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~----~~al~~~p~~~~a~~~ 87 (438)
.+.-+.|..|.+.+...++.+..-. .+.-+..+. ++|.|++++.+- ..+...+.......++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~-------------~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFR-------------VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------------HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888887777766654331 111122223 567777666544 3333344333444557
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHH
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYS 155 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~ 155 (438)
.+++..+.+..++.+++.+-...+.+- |. ......+|.+++.++.|+.+++.|+.|+++...+ ...+.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 889999999999999999988888763 32 4566779999999999999999999999886443 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 156 RRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 156 ~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
.+|..+..+.++++|..+..+|+.+--
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 999999999999999999999998853
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.012 Score=54.21 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=68.8
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHh-cCHHHHHHHHHHHhhcCCc------cHHHHHHH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRR 157 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l-~~~~eA~~~~~~al~l~p~------~~~a~~~l 157 (438)
..+|+.++..+|+.|+.++|++..+ +..+..+|.+|..- .+++.|+.+|++|-..... --+++..-
T Consensus 81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 3344555888888888888888654 34456777777664 7888888888888765432 23556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 158 ATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
|..-..+|+|.+|+..|+++.+-.-+|+-.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 666778889999999998888777666544
No 226
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.95 E-value=0.0075 Score=64.82 Aligned_cols=124 Identities=14% Similarity=0.005 Sum_probs=101.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~ 138 (438)
+-+++.+|+....+.++..|+...+.+ ..|..+++.|++++|..+++..-...++ ...+-.+-.||..++++++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 668899999999999999999988866 6789999999999999887766666666 6777888899999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
.|+++++.+|. -...+.+=.+|.+-+.|.+--+.--+..+.-|.++-
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999 777777777888888886554444444456666653
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0099 Score=57.46 Aligned_cols=147 Identities=13% Similarity=0.032 Sum_probs=114.4
Q ss_pred CCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-CCC----HHHHHHHHHHHHHh
Q 013696 56 PSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT----AVAYANRAMAYLKL 130 (438)
Q Consensus 56 ~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-~p~----~~~~~~la~~~~~l 130 (438)
+..+..|++-+|....++.|...|.+..+ ++.--.+++.+|+...-...+.+.+-. +++ ..+.-..+.++...
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla--~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLA--VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhh--hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 33457788999999999999999987777 667778889999999999999998877 666 23344567888899
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHH--H-----HHHHHHHHH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-------QNQE--I-----KKQLAEVKS 196 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P-------~~~~--~-----~~~l~~a~~ 196 (438)
|-|++|++..++++++++.+.-+.+..+.++...|++.++++...+.-..=. .|-. + ..+++.|+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999988765322111 1100 0 356677777
Q ss_pred HHHHHHhh
Q 013696 197 LYEKEVFQ 204 (438)
Q Consensus 197 ~~~ka~~~ 204 (438)
.|.+.+..
T Consensus 269 IyD~ei~k 276 (491)
T KOG2610|consen 269 IYDREIWK 276 (491)
T ss_pred HHHHHHHH
Confidence 77765543
No 228
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0098 Score=56.63 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=77.3
Q ss_pred HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696 93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
.+.+..+|.+||++..--.+.+|. ...+..+|.||+...+|..|..+|++.-.+.|...+..+..|..+++.+.+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 348899999999999999999997 7778999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 013696 172 EDSEFA 177 (438)
Q Consensus 172 ~~~~~a 177 (438)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 766543
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.024 Score=50.95 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=89.8
Q ss_pred hHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 67 PVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 67 Ai~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
.+...++....++.... ......++..++..+++++|+..++.++....+ +.+-.++|.+.+.+|.+++|+..++
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 34444555555544333 334568889999999999999999999976554 6777889999999999999998777
Q ss_pred HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 142 ~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
..-.-+- .+.....+|.++...|+-++|+..|.+++..+++..
T Consensus 151 t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 151 TIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 6543111 123367899999999999999999999999985543
No 230
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.86 E-value=0.024 Score=63.76 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=134.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHH
Q 013696 14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNE 93 (438)
Q Consensus 14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~ 93 (438)
.|.-.+...|++-+-.+++|+..+........+ .=.++-.+-. ..|.-+.-...|++|-+... .... +..+.-+
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLN-iWiA~lNlEn--~yG~eesl~kVFeRAcqycd-~~~V--~~~L~~i 1539 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLN-IWIAYLNLEN--AYGTEESLKKVFERACQYCD-AYTV--HLKLLGI 1539 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHH-HHHHHHhHHH--hhCcHHHHHHHHHHHHHhcc-hHHH--HHHHHHH
Confidence 444455666666666777777665222211000 0001111111 22444555677777777552 2233 5678888
Q ss_pred HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHH
Q 013696 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKES 170 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~~~lg~a~~~lg~~~eA 170 (438)
|.+.+++++|.++|+..++...+ ...|...|..++..++-+.|...+.+|++.-|. +.......|..-++.|+.+.+
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 99999999999999999998876 888999999999999999999999999999887 788888999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHhhc
Q 013696 171 IEDSEFALRLEPQNQEIKKQL----------AEVKSLYEKEVFQK 205 (438)
Q Consensus 171 ~~~~~~al~l~P~~~~~~~~l----------~~a~~~~~ka~~~~ 205 (438)
...|+-.|.-+|.-.+.|.-| ..++.+|++++.++
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999999999999887775444 45666788877765
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.022 Score=55.09 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~-l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l 164 (438)
|..+.+...+.+..+.|-..|.+|++..+. ..+|...|..-++ .++.+.|...|+.+++..|.+...|.....-+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 456667777777788888888888754444 6777777777555 45666688888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCH
Q 013696 165 GKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 165 g~~~eA~~~~~~al~l~P~~~ 185 (438)
|+.+.|...|++++..-|...
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHH
T ss_pred CcHHHHHHHHHHHHHhcCchh
Confidence 888888888888888777665
No 232
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.0053 Score=61.89 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=99.7
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHh-cc------CCC---HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI-AL------SPT---AVAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 72 ~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al-~~------~p~---~~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
..++.+..+.+.+ +...++.+|-.|+|..|.+.+...- .. .|. ...|.|+|-+++.++.|.-+..+|.
T Consensus 230 K~vmn~a~~s~~~--l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~ 307 (696)
T KOG2471|consen 230 KHVMNIAQDSSMA--LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL 307 (696)
T ss_pred hhhhhhcCCCcHH--HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH
Confidence 3444455555555 6688999999999999999875532 11 233 3457999999999999999999999
Q ss_pred HHhh---------cCC---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 142 EALN---------LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 142 ~al~---------l~p---------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
+|++ +.| ......|+.|..|...|+.-.|.++|.++....-.+|..|-.+.++--+-.
T Consensus 308 kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 308 KALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred HHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9995 111 235679999999999999999999999999999999999999988765443
No 233
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.75 E-value=0.011 Score=58.64 Aligned_cols=91 Identities=20% Similarity=0.358 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p 148 (438)
..-|..+|++++|..|+.-|..+|++... ..+-..+..||+++++.+.|+....+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 34566788899999998888888876321 13456789999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 149 RYIKAYSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 149 ~~~~a~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
.++..+.+.|.+...+.+|.+|..-+--+.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987655443
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.71 E-value=0.043 Score=53.08 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=96.4
Q ss_pred ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH-hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~-~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
.+.|...|.+++...+..... |...|..-+. .++.+.|...|+++++..|. ...|......+..+++.+.|...|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 567889999998655444555 5577887666 57777799999999999998 7778777888899999999999999
Q ss_pred HHhhcCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696 142 EALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (438)
Q Consensus 142 ~al~l~p~~~---~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~ 186 (438)
+++..-+... ..|-....--...|+.+.......++..+.|.+..
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9998866554 57888888888899999999999999999988543
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.025 Score=53.09 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHh----hcCC--ccHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEAL----NLDD--RYIKAYSRRA 158 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al----~l~p--~~~~a~~~lg 158 (438)
.+.+..++...|.|.-.+..|.+.++.+|. +.....+|.+.++.|+.+.|..+|+++- .++. .+.....+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 456777888899999999999999999966 8889999999999999999999999543 3332 3345677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 159 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
.+|...++|.+|...|.+++..+|.++.+.+.-+-+.-++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88899999999999999999999999887544444443333
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.64 E-value=0.0037 Score=38.91 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 153 AYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
+++++|.++..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777776665
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.58 E-value=0.066 Score=54.62 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCccHHHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATARK 162 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l-~p~~~~a~~~lg~a~~ 162 (438)
-..+|.|..+.|+.++||+.|+..++.+|. ..++.|+..|++.++.|.++...+.+--.+ -|..+...|..|....
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 457888888888888888888888887765 567888888888888888887777664322 1444555555544332
Q ss_pred H-cCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 013696 163 E-LGK---------------LKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 163 ~-lg~---------------~~eA~~~~~~al~l~P~~~~~ 187 (438)
+ .|+ -..|++.+.+|++.||..+..
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 2 111 123455566666666655443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.068 Score=51.10 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=84.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHH--HHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la--~~~~~l~~~~eA~ 137 (438)
..|++.+|...|..++...|.+..+ ...++.+|...|+.+.|...+...=.-.....+....+ ..+.......+ .
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~--~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~ 222 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEA--KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-I 222 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchH--HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-H
Confidence 5566777777777777777777666 33777777777777776665543211111111111111 11111111111 2
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLY 198 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a~~~~ 198 (438)
..+.+.+.-+|+++.+-+.+|..+...|++++|.+.+-..++.+-+. ..+...+-+...++
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 34566667789999999999999999999999999999999887543 44455554444443
No 239
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.45 E-value=0.0057 Score=39.38 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 153 AYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+|.++|.+|..+|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57888999999999999999999966543
No 240
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.44 E-value=0.014 Score=41.21 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a 160 (438)
..++.+|..+.++|+|.+|..+++.+++++|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3577889999999999999999999999999998876555443
No 241
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.44 E-value=0.12 Score=51.12 Aligned_cols=122 Identities=11% Similarity=-0.000 Sum_probs=96.3
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA 136 (438)
+..|+|..|.....+.-+..+....+ +..-+.+.-..|+++.|-.+..++-+.-++ -..+..++...+..|++..|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 35688888888888866655443333 445666777889999999999998888444 66677788888889999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
......++...|.++........+|...|+|.+....+.+.-+-.-
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 9999999999999999988888899999999888888777665543
No 242
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.35 E-value=0.051 Score=58.70 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=84.5
Q ss_pred HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~ 172 (438)
....+++..|+....+.++..|+ ..+...-|..+.++|++++|..+++..-...+++-..+--+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35578899999999999999999 77888889999999999999988888878888888899999999999999999999
Q ss_pred HHHHHHhhCCCCHHH
Q 013696 173 DSEFALRLEPQNQEI 187 (438)
Q Consensus 173 ~~~~al~l~P~~~~~ 187 (438)
.|++++..+|+ .+.
T Consensus 99 ~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 99 LYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHHhhCCc-HHH
Confidence 99999999999 444
No 243
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.33 E-value=0.0069 Score=36.27 Aligned_cols=27 Identities=44% Similarity=0.538 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALNLD 147 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~l~ 147 (438)
+++|.++..+++++.|+.++++++.++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 333444444444444444444443333
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.32 E-value=0.006 Score=36.56 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
.+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=0.086 Score=52.67 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=102.4
Q ss_pred HHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-c---CCCccchHHHHHhhhc-CCCCChhHHHHHH
Q 013696 15 FLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S---YSRNYDPVSHISSSLM-NEESTPDATSEKE 89 (438)
Q Consensus 15 ~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~---~g~~~eAi~~~~~al~-~~p~~~~a~~~~~ 89 (438)
.++++++|.. |...-+.+...+ ...... ........+-++ + .|+.++|+..+..++. ..+.+++. +-.
T Consensus 150 SyRdiqdyda-mI~Lve~l~~~p-~~~~~~---~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~--~gL 222 (374)
T PF13281_consen 150 SYRDIQDYDA-MIKLVETLEALP-TCDVAN---QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT--LGL 222 (374)
T ss_pred HhhhhhhHHH-HHHHHHHhhccC-ccchhc---chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH--HHH
Confidence 5677888866 555566665553 110000 000001112222 3 6899999999999554 44555555 446
Q ss_pred HHHHHHH---------hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHh-------hcC----C
Q 013696 90 LGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR-FQEAEDDCTEAL-------NLD----D 148 (438)
Q Consensus 90 ~g~~~~~---------~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~-~~eA~~~~~~al-------~l~----p 148 (438)
.|.+|-. ....++|+.+|.++.+++|+...--|++.++...|. ++...+.-.-++ +.. -
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6666532 235789999999999999885555667777766664 322222111111 111 1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 149 ~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
.+.-.+..++.+..-.|++++|++++++++++.|...+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 2333455677888899999999999999999998776543
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.26 E-value=0.066 Score=49.60 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHHhccHHHHHHHHHHHhcc------CCC--HHHHHHHHHHHHHhcCHH-------HHHHHHHHHhhcCC------ccHH
Q 013696 94 CFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRRFQ-------EAEDDCTEALNLDD------RYIK 152 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~l~~~~-------eA~~~~~~al~l~p------~~~~ 152 (438)
+-....+++|++.|.-|+-. .+. +.++..+|.+|..+|+.+ .|+..|.+++.... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33345677777777766653 122 677888888888888844 45666666665442 2357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
..|.+|.++..+|++++|+.+|.+++...-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 889999999999999999999999997764443
No 247
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.019 Score=61.28 Aligned_cols=114 Identities=29% Similarity=0.450 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRR 157 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l--~~~~eA~~~~~~al~l~p~~~~a~~~l 157 (438)
...+..|+..+..++|..|.--|..++.+-|. +....+.+.||..+ ++|..++..|.-|+...|...++++.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 33668899999999999999999999999885 66678888888765 599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
+.+|..+++++-|+.++.-.....|.+..+...+.+....|
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999988877666666665
No 248
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.044 Score=57.12 Aligned_cols=95 Identities=19% Similarity=0.105 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
+.+.|...|+..+|..+++.|...+...|. +....+++.||+++.+.+.|.+.+..|-+.+|.++-..+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 567788889999999999999999987765 6778899999999999999999999999999999988888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 013696 160 ARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+...-|+-.+|+.+..+.....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhh
Confidence 8888999999999988777554
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.19 E-value=0.0079 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~ 149 (438)
+++++|.||..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555554443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.18 E-value=0.14 Score=53.25 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=93.3
Q ss_pred CCccchHHHHHhhhcCCCCChhHHH-----HHHHHHHH-H----HhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATS-----EKELGNEC-F----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~-----~~~~g~~~-~----~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l 130 (438)
||-+.++..+.++.... +.....+ .+..+... + .....+.|...........|+ +..++..|.++...
T Consensus 202 gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 78888899998887732 3322211 11111111 1 345678899999999999999 77789999999999
Q ss_pred cCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 131 RRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
|+.++|+..+++++...... .-+++-+|+++..+++|++|..+|.+.++.+.-.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence 99999999999999544332 3468899999999999999999999999876653
No 251
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.18 E-value=0.11 Score=43.92 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHhh-cCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 114 SPTAVAYANRAMAYLKLR---RFQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 114 ~p~~~~~~~la~~~~~l~---~~~eA~~~~~~al~-l~p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
++.....+++|.++.+.. +..+.+..++..+. -.|. .-...|.+|..++++|+|+.|+.+.+..|+.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455777888888888766 46678888888886 3343 356788999999999999999999999999999998874
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.044 Score=47.16 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
+..++..+...|++++|+..+.+++..+|. ..+|..+-.+|...|++.+|+..|.++..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567788889999999999999999999999 88999999999999999999999988753
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.07 E-value=0.0096 Score=38.32 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
+|.++|.+|..+|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775533
No 254
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.02 E-value=0.084 Score=43.13 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=52.1
Q ss_pred HHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhhcCCccHHHHH
Q 013696 91 GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYS 155 (438)
Q Consensus 91 g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~-----------~~eA~~~~~~al~l~p~~~~a~~ 155 (438)
+..++..|++-+|++..+..+...++ +..+..-|.++..+.. .-.++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 45566666666666666666666554 2334444555544331 23456666677777766666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 156 RRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 156 ~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
.+|.-+.....|++++.-.+++|.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666555555566666666666554
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.00 E-value=0.058 Score=55.02 Aligned_cols=114 Identities=18% Similarity=0.044 Sum_probs=77.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-------CC---------------C-
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SP---------------T- 116 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-------~p---------------~- 116 (438)
+..+...-++.-.+||+++|+...++. .++... .....+|..+|+++++. +. +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYI--LLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYI--LLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHh--hccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 556677777778888888888777733 444321 11123344444444332 11 0
Q ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 117 ---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 117 ---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
..+-..+|+|..++|+.++|++.+...++..|. +...++++-.++..++.|.++...+.+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 234566889999999999999999999887764 4668889999999999998888877765
No 256
>PRK10941 hypothetical protein; Provisional
Probab=95.95 E-value=0.064 Score=51.42 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a 160 (438)
..+.++-.+|.+.++|+.|+.+.++.+.++|+ +.-+.-+|.+|.++|.+..|..+++.-+...|+++.+-.-...+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 33667788999999999999999999999999 88899999999999999999999999999999998876554443
No 257
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.94 E-value=0.027 Score=53.88 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=43.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg 158 (438)
..+....+.|+.++|...|..|+.+.|. +.++...|.....-++.-+|-++|.+|+.++|.+.+|+.+++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4444455566666666666666666666 666666666666666666666666666666666666666554
No 258
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.87 E-value=0.3 Score=51.35 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=103.8
Q ss_pred cCCCccchHHHHHhhhc-CCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CC----HHHHHHHHHHHHHh
Q 013696 60 SYSRNYDPVSHISSSLM-NEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL 130 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~-~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~----~~~~~~la~~~~~l 130 (438)
..|+..+-+..|..++. .+|.... ...|...|..|...|+.+.|-..|+++.... +. +.+|.+-|..-+..
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34566777778877775 5554432 2236688888889999999999999988875 33 77888888888888
Q ss_pred cCHHHHHHHHHHHhhcCC------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----
Q 013696 131 RRFQEAEDDCTEALNLDD------------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----- 187 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p------------------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----- 187 (438)
.+++.|....++|...-. ...+.|...+......|-++.....|++++.|.-..|..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 899999888888875421 124567777777788888888888888888877666554
Q ss_pred -----HHHHHHHHHHHHHHHhh
Q 013696 188 -----KKQLAEVKSLYEKEVFQ 204 (438)
Q Consensus 188 -----~~~l~~a~~~~~ka~~~ 204 (438)
.....++.+.|++++.+
T Consensus 519 mfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCcc
Confidence 33445666666666554
No 259
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.84 E-value=0.032 Score=53.41 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 190 (438)
.+.|.-..+.|+.+.|...|+.|+.++|+++.++..+|.......+.-+|-.+|-+||.+.|.|.+++-+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4445556688999999999999999999999999999999999999999999999999999999998443
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.12 Score=46.34 Aligned_cols=96 Identities=17% Similarity=0.096 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cH----HHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YI----KAYSR 156 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~----~a~~~ 156 (438)
+..+|..|.+.|+++.|+++|.++...... ...++++-.+.+..++|..+..+..++-.+-.. +. +.-..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 779999999999999999999998887644 677888899999999999999999998765322 22 22344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 157 RATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 157 lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
-|..+...|+|.+|-..|-.++.-..
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccCcCCC
Confidence 57778889999999999877664443
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.67 E-value=0.051 Score=56.16 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHH-hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 84 ATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 84 a~~~~~~g~~~~~-~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
.+.+..++..|++ .|+..+|+.||..++-..|. -.++..+|.++.+.|...+|--.+..|+.-.|.....++.+|.
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence 3335666777765 69999999999999998876 6778999999999999999999999999888877777999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 160 ARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
++..+|.|......|..+.+..|.....
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 9999999999999999999999987665
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.66 E-value=0.11 Score=48.19 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=69.1
Q ss_pred cCCCccchHHHHHhhhc-----CCCCChhHHHHHHHHHHHHHhcc-------HHHHHHHHHHHhccC--CC-----HHHH
Q 013696 60 SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALS--PT-----AVAY 120 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~-----~~p~~~~a~~~~~~g~~~~~~g~-------y~~Ai~~y~~al~~~--p~-----~~~~ 120 (438)
....+++|++.|.-|+- ..+....|..+..+|+.|...|+ +..|+..|.+++... |. ..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34467889998887765 22333556678888999988887 567777788887754 22 5778
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~ 149 (438)
+.+|..+.++|++++|..+|.+++.....
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999976543
No 263
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.64 E-value=0.28 Score=51.54 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=130.7
Q ss_pred hhhhHHHHHHHHHhHHHHH----HHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCC
Q 013696 5 NRDQALDFQGFLNDLQDWD----LSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEE 79 (438)
Q Consensus 5 ~r~~~~~l~~~~~~l~~we----~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p 79 (438)
+|||......|.+...-++ +.+.-+.+++++..|....+ ++ ...+...|..| ..|+.+.|...|++++...=
T Consensus 342 LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G-s~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG-SP--GTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC-Ch--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 3445444444444433322 23445566666665443322 11 11223344446 88999999999999998652
Q ss_pred CCh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHhcCHHHHHH
Q 013696 80 STP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 80 ~~~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~l~~~~eA~~ 138 (438)
... -+..|.+.|..-....+++.|+.+.++|...=.. ..+|...+......|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 222 1444778888888889999999999988764111 2445555666666777888888
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHH-------------HHHHHHHHHHHHHHh
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP--QNQEIK-------------KQLAEVKSLYEKEVF 203 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P--~~~~~~-------------~~l~~a~~~~~ka~~ 203 (438)
.|++.|.+.--.|....+.|..+....-+++|.+.|++.+.|-| .-.++| ..++.|..+|++++.
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 88899888877888888888888888888999999999888874 333332 235677777777776
Q ss_pred hc
Q 013696 204 QK 205 (438)
Q Consensus 204 ~~ 205 (438)
.-
T Consensus 579 ~C 580 (835)
T KOG2047|consen 579 GC 580 (835)
T ss_pred cC
Confidence 43
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.59 E-value=0.19 Score=49.67 Aligned_cols=103 Identities=20% Similarity=0.100 Sum_probs=71.8
Q ss_pred cCCCccchHHHHHhhhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc---CC-----------------
Q 013696 60 SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SP----------------- 115 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~---~p----------------- 115 (438)
..|.++-|...+.++...++. .+.. ....+..++..|+..+|+......+.. .+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v--~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRV--FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcch--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 668888888888887765421 2333 457788888888888888887777761 00
Q ss_pred --------C-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696 116 --------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (438)
Q Consensus 116 --------~-------~~~~~~la~~~~~l------~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l 164 (438)
. +.++..+|...... +.+++++..|..++.++|...++|+.+|..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0 45566666666666 6777888888888888888888888888765543
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.57 E-value=0.02 Score=52.70 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 128 ~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
...++.+.|.+.|.+++.+-|.....|+++|....+.|+++.|...|+++|+++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555666666666666666666666666666666666666666666666666654
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.24 Score=50.55 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 013696 101 KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFAL 178 (438)
Q Consensus 101 ~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-~~eA~~~~~~al 178 (438)
..=+..|++|+...+. ...|.+...-..+.+.+.+--..|.+++...|+++..|..-|.-.+..+. .+.|.+.|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3445678999988885 88887776666666679999999999999999999999998888777776 899999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHH
Q 013696 179 RLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 179 ~l~P~~~~~~~~l~~a~~~~ 198 (438)
+.+|+++..+..+-...-.|
T Consensus 168 R~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred hcCCCChHHHHHHHHHHHHH
Confidence 99999999977666555433
No 267
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.45 E-value=0.15 Score=43.14 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhc-cCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696 82 PDATSEKELGNECFKQK---KFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155 (438)
Q Consensus 82 ~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~-~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~ 155 (438)
......+++++++.+.. +..+.|.+++..+. -.|. -...+.+|..+.++++|+.++.+++..++.+|+|..+.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34445778999998765 46788999999997 4565 677888999999999999999999999999999988765
Q ss_pred HHHHHH
Q 013696 156 RRATAR 161 (438)
Q Consensus 156 ~lg~a~ 161 (438)
..-.+.
T Consensus 110 Lk~~ie 115 (149)
T KOG3364|consen 110 LKETIE 115 (149)
T ss_pred HHHHHH
Confidence 544433
No 268
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.39 E-value=0.027 Score=60.17 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=69.6
Q ss_pred cCCCccchHHHHHhhh----------cCCCCChh--------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHH
Q 013696 60 SYSRNYDPVSHISSSL----------MNEESTPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al----------~~~p~~~~--------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~ 121 (438)
.-++.+.|+++|+++- ..+|...+ -..|...|..+-..|+.+.|+.+|..|-. |+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~f 942 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YF 942 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hh
Confidence 3467788888887752 22222111 11156677777788888888888876533 45
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
.+-.+.+.+|+.++|-...+ ...+-.|.|.+|..|...|++.+|+..|.+|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55555556677666654333 34567778888888888888888888777653
No 269
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.37 E-value=0.088 Score=43.01 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=74.1
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhcc-----------HHHHHHHHHHHhccCCC-HHHHHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM 125 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~-----------y~~Ai~~y~~al~~~p~-~~~~~~la~ 125 (438)
|..|++-+|++..+..+...++...+ ..+...|..++.... .-.|+++|.++..+.|. +..++.+|.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 47899999999999999988776643 446788888877543 45789999999999999 888999998
Q ss_pred HHHHhcCHHHHHHHHHHHhhcC
Q 013696 126 AYLKLRRFQEAEDDCTEALNLD 147 (438)
Q Consensus 126 ~~~~l~~~~eA~~~~~~al~l~ 147 (438)
-+-...-|+++..-+.+++.+.
T Consensus 87 ~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 87 QLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhhhHHHHHHHHHHHHHHhccc
Confidence 8777788999999999998764
No 270
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.36 Score=50.27 Aligned_cols=128 Identities=16% Similarity=0.010 Sum_probs=99.0
Q ss_pred hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH-HHHHHHHh
Q 013696 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA-EDDCTEAL 144 (438)
Q Consensus 67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA-~~~~~~al 144 (438)
++..+...+.+++.++.......+...+...+....++-....++..+|. +.++.++|.+....|....+ ..++..+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55666666677777777533223677777888888899999999999998 88899998888777765554 55556699
Q ss_pred hcCCccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696 145 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (438)
Q Consensus 145 ~l~p~~~~a~~~l------g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 194 (438)
...|++.....-+ |.....+|+..++..++.++..+.|.++.+.+.+--+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 9999987765544 8888999999999999999999999998875554433
No 271
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.28 Score=46.62 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.....|+=..|...++++.|..+..+.+.++|.++.-+.-+|.+|.++|.+.-|++++...++..|+++.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 55667777889999999999999999999999999999999999999999999999999999999998876
No 272
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.22 E-value=0.32 Score=55.17 Aligned_cols=125 Identities=12% Similarity=0.001 Sum_probs=112.5
Q ss_pred cC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCH
Q 013696 58 GN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRF 133 (438)
Q Consensus 58 ~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~ 133 (438)
.| ..+++++|.++|+.-++...+.... |..+|..++++.+-+.|-..+.+|++.-|. .......|..-++.|+-
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~v--W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKV--WIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhH--HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 35 5678999999999999877655556 779999999999999999999999999987 67778889999999999
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
+.+...|+-.+.-.|.-...|.-+...-.++|+..-+...|++++.+.=.-
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999999999999999999999887543
No 273
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.90 E-value=0.66 Score=46.12 Aligned_cols=121 Identities=20% Similarity=0.130 Sum_probs=93.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc---CCC------HHHHHHHHHHHHHh
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL 130 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~---~p~------~~~~~~la~~~~~l 130 (438)
..|+.+-|+.+-+++-...|..+.+ +...-......|+|+.|++..+...+. .++ +.++...++..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld- 242 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD- 242 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-
Confidence 6688888888888888888877776 335555667788999998887665543 233 3444545544443
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
.+...|..+...++++.|+.+.+-..-+.+++..|+..++-..++.+.+.+|.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 35778889999999999999999999999999999999999999999999985
No 274
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.46 Score=48.37 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=91.1
Q ss_pred cCCCccchHHHHHhhhcC---CCC-----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMN---EES-----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY 127 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~---~p~-----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~ 127 (438)
..|++.+|+.......+. .|. ...+..+..+|..+..-+-|+.|...|..|.++-.. +.+-.|+|..|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 558899998887766653 233 123455778999999999999999999999998755 66678899999
Q ss_pred HHhcCHHHHHHHHHHHhhcCCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 128 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 128 ~~l~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+..++-+. .|+-.-.+.|.+ ..++|..|.-.+..+++.||...+.+.|+..
T Consensus 415 L~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 99876443 333333455543 3568889999999999999999999999987
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.49 E-value=0.22 Score=39.32 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
+..+++++.-+|+++.+.+.+|.++...|++++|++.+-.+++.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456677777888888888888888888888888888888888877665
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.33 E-value=0.82 Score=48.66 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=91.1
Q ss_pred CCccchHHHHHhhhc-------CCCCChhHHHHHHHHHHHHHh----c-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696 62 SRNYDPVSHISSSLM-------NEESTPDATSEKELGNECFKQ----K-KFKEAIDCYSRSIALSPTAVAYANRAMAYLK 129 (438)
Q Consensus 62 g~~~eAi~~~~~al~-------~~p~~~~a~~~~~~g~~~~~~----g-~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~ 129 (438)
+|.+.|+.+|..+.. .. .+.+ .+.+|.+|.+. . ++..|+.+|.++-.... +.+.+.+|.||..
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~--~~~a--~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG--LPPA--QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYET 337 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc--CCcc--ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHc
Confidence 578999999998876 22 3345 66899999884 3 78999999999987643 6677788888887
Q ss_pred hc---CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 013696 130 LR---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE 181 (438)
Q Consensus 130 l~---~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l----g~~~eA~~~~~~al~l~ 181 (438)
-. ++..|.++|..|... .++.+++++|.+|..- -+...|..++.++-..+
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 66 678999999999875 5789999999988753 36789999999999888
No 277
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.21 E-value=0.075 Score=48.99 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=53.1
Q ss_pred HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH
Q 013696 93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151 (438)
Q Consensus 93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~ 151 (438)
...+.++++.|.+.|.+++.+.|. ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456678999999999999999999 88899999999999999999999999999999764
No 278
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.17 E-value=0.2 Score=41.47 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCccchHHHHHhhhcCCCCC----------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-------cCCC-----HHH
Q 013696 62 SRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----AVA 119 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~----------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-------~~p~-----~~~ 119 (438)
|-|.+|...+++++...... .++..+-.++-++...|+|++++..-.++|. ++.+ ..+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 55788888888888754332 2345566888999999999988776666664 4444 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
.+++|.++..+|+.++|+..|+.+-++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 789999999999999999999988653
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=2.3 Score=39.93 Aligned_cols=97 Identities=22% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-----CccHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKAY 154 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-----p~~~~a~ 154 (438)
|..-+++|...++|++|-.++.++++...+ +.+|-..|+....+..+.++...|++|..+. |+-...-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 344456677778899988888888854322 5667777888888888999999999988663 3333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 155 SRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
...|--..+..+.++|++.|++++.+--.
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 34444455666788888888888876543
No 280
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.10 E-value=0.49 Score=47.00 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDC 140 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~ 140 (438)
..+...|...-.+++++.|+...+-. .-+..+++.|+..++-..++.+++..|.+.++ ..|....--+.++.-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav--~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAV--VAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHH--HHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHH
Confidence 34577788889999999999888744 77899999999999999999999999985543 2333333333444444
Q ss_pred HH---HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHh
Q 013696 141 TE---ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVF 203 (438)
Q Consensus 141 ~~---al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~ 203 (438)
++ .-.+.|++....+.++.+-...|+|..|...-+.+.++.|..... .++-.++..++.+++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44 446779999999999999999999999999999999999976543 2444555566666553
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.07 E-value=0.75 Score=40.29 Aligned_cols=95 Identities=12% Similarity=-0.071 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
+......-...++.+++...+...--+.|. +.+-..-|..+...|+|.+|+..++.+..-.|..+.+--.++.|++.+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 567777788888999999999888888999 8888888999999999999999999999999999988889999999999
Q ss_pred CHHHHHHHHHHHHhhCC
Q 013696 166 KLKESIEDSEFALRLEP 182 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P 182 (438)
+..- ..+-..++.-.+
T Consensus 93 D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 93 DPSW-RRYADEVLESGA 108 (160)
T ss_pred ChHH-HHHHHHHHhcCC
Confidence 8642 223344555544
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.53 Score=45.89 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=80.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCcc---HHHHHHHHHHHHH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRY---IKAYSRRATARKE 163 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l-~p~~---~~a~~~lg~a~~~ 163 (438)
..+...+..|++.+|...+.+.+.-.|. -.++..--.+++.+|+...-...+++.+-. +++- +...-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 3455677889999999999999999998 555555557788889999888999999876 5554 4444456778899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 164 LGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 164 lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.|-|++|...-.+++++||.+..+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa 211 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWA 211 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHH
Confidence 999999999999999999998776
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.43 Score=44.55 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred cCCCccchHHHHHhhhcCCC--CCh-hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEE--STP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK 129 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p--~~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~ 129 (438)
....+.++..+|+++..+.- ..+ .+-.-...+--....-+.++|+..|++++.+... ...+...+.++.+
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 44556677777777655321 111 1211234555566677778888888888776422 3455666777777
Q ss_pred hcCHHHHHHHHHHHhhc----C--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 130 LRRFQEAEDDCTEALNL----D--DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 130 l~~~~eA~~~~~~al~l----~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
++.|.+|-..+.+-..+ + ++..+++...-.+|....+|..|..+|+..-++.
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 88888776655554332 2 3334555555566666678888888887766654
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.00 E-value=0.099 Score=34.05 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
+.++|.+|..+|+|++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444444
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.90 E-value=0.14 Score=33.39 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 151 IKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
..++.++|.+|..+|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998764
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.78 E-value=2.1 Score=41.30 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=89.4
Q ss_pred CcCCCccchHHHHHhhhcCC----CCChh--HHHHHHHHHHHHHhc-cHHHHHHHHHHHhcc----CC------C-----
Q 013696 59 NSYSRNYDPVSHISSSLMNE----ESTPD--ATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T----- 116 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~----p~~~~--a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~----~p------~----- 116 (438)
..+|+++.|.-+|.++-... |+... +..+++.|...+..+ +|+.|+..+++++++ .+ +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999886544 32222 455889999999999 999999999999987 21 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHH---HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 117 AVAYANRAMAYLKLRRFQEAED---DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~---~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
..++..++.+|+..+.++...+ ..+.+-.-.|+.+..++..=.++...++.+++.+.+.+++.--+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4567888999999887664433 33334344566666664444444448999999999999887654
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.72 E-value=0.76 Score=36.28 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696 106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (438)
Q Consensus 106 ~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~ 149 (438)
.+.+.++.+|+ ..+.+.+|.++...|++++|++.+-.+++.+++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34444444444 444444555555555555555555555444443
No 288
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=3.4 Score=39.19 Aligned_cols=124 Identities=9% Similarity=0.039 Sum_probs=89.1
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh-ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH-HHHH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EAED 138 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~-eA~~ 138 (438)
..-..|+.+-..+|.++|.+...+. .+-.++... .+..+-+++..+.++-+|. -.+|..+-.+...+|++. .-+.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~--yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQ--YRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3445566666677777777666633 333333332 3456667778888888887 777777777777777777 6778
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.+..++..+..+.-+|..+-++....+.|+.-+.+....|..+-.|..+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 8888888888888888888888888888888888888888887666555
No 289
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.46 E-value=0.2 Score=48.28 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=76.1
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 107 y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~-lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
|.++-...|+ +..|...+....+.+.|.+--..|.+++...|.++..|.. -+.-+...+++..+...|.++|+++|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 4444444555 7777777777778888999999999999999999999877 5566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013696 185 QEIKKQLAEVKSLYE 199 (438)
Q Consensus 185 ~~~~~~l~~a~~~~~ 199 (438)
+..|.++-...-.|-
T Consensus 176 p~iw~eyfr~El~yi 190 (435)
T COG5191 176 PRIWIEYFRMELMYI 190 (435)
T ss_pred chHHHHHHHHHHHHH
Confidence 999887776665554
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=0.35 Score=43.63 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=70.2
Q ss_pred cCCCccchHHHHHhhhcCCC-CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA 136 (438)
..|++++|+..+..++..-. .+..+..-..+|.+.+..|.+++|+..+...- ++. +...-.+|.+++..|+-++|
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHH
Confidence 77999999999999986432 22334445688999999999999998865432 233 45567789999999999999
Q ss_pred HHHHHHHhhcCCccH
Q 013696 137 EDDCTEALNLDDRYI 151 (438)
Q Consensus 137 ~~~~~~al~l~p~~~ 151 (438)
...|.+++..+++.+
T Consensus 179 r~ay~kAl~~~~s~~ 193 (207)
T COG2976 179 RAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHccCChH
Confidence 999999999985543
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=5.7 Score=35.41 Aligned_cols=127 Identities=7% Similarity=-0.016 Sum_probs=92.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~ 134 (438)
..+..++|+..|...-...-......+....|.+....|+-..|+..|..+-.-.|- -.+...-|..+...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 347788888888887665544455555778899999999999999999998776654 234455567778888998
Q ss_pred HHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 135 EAEDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 135 eA~~~~~~al-~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.-..-.+..- .-+|--..+.-.+|.+-.+.|++..|...|..... +...+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 8665444332 22333456677789999999999999999998876 4333433
No 292
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.16 E-value=0.67 Score=51.94 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHhhcCCccHHHHHH
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSR 156 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~-------~~~eA~~~~~~al~l~p~~~~a~~~ 156 (438)
.....++...+.|+.|+..|++.-.-.|. ..+.+..|...+..- .+.+|+.-|++.. -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 34566788889999999999999999997 688899998877643 3666666666543 34566777999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 157 RATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
.|.+|..+|+|++-+..|.-|++-.|..|++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999999999876
No 293
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.12 E-value=0.4 Score=48.74 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=96.5
Q ss_pred CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
+..|+...|-.....+|...|..+.... ..+.++...|.|+.|.....-+-.+-.. ..+..-+-....+++++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4668888888888888888888888744 6688889999999998887665544333 444445556778899999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
......+.-.-.++....--|..-..+|-+++|.-++.+++.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 98888887776777766666666778899999999999999999853
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.12 E-value=2.6 Score=40.62 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=57.0
Q ss_pred CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCC-C-HHHHHHHHHHHHHhc-----
Q 013696 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSP-T-AVAYANRAMAYLKLR----- 131 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p-~-~~~~~~la~~~~~l~----- 131 (438)
+..+|+.+|..+... ..+.+ .+.+|..|.. ..++.+|..+|.++....- . ..+.+++|.+|..-.
T Consensus 92 ~~~~A~~~~~~~a~~--g~~~a--~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAAD--GLAEA--LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhc--ccHHH--HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 355555555533322 23333 3355555555 3356666666666655532 2 233555555554421
Q ss_pred --CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 013696 132 --RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 132 --~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~P 182 (438)
+...|...|.++-... ++.+.+++|.+|.. -.++.+|..+|.++-....
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2224555555555544 55556666655543 1255566666666655544
No 295
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.94 E-value=0.26 Score=50.59 Aligned_cols=90 Identities=17% Similarity=-0.002 Sum_probs=76.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh---ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~---g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e 135 (438)
..+....|+..|.+++...|..... +-+.+.++++. |+.-.|+.....|++++|. ..+++.++.++..++++.+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~--l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYL--LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHH--HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 4456788999999999988877666 55778887774 5677888889999999999 8999999999999999999
Q ss_pred HHHHHHHHhhcCCccH
Q 013696 136 AEDDCTEALNLDDRYI 151 (438)
Q Consensus 136 A~~~~~~al~l~p~~~ 151 (438)
|+.+...+....|.+.
T Consensus 464 al~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDV 479 (758)
T ss_pred hhhhHHHHhhcCchhh
Confidence 9999998888888654
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.58 E-value=3.1 Score=40.93 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--C-C------
Q 013696 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D------ 148 (438)
Q Consensus 83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~l--~-p------ 148 (438)
.+..+...+..+.+.|.++.|...+.++...++. +.+....+..+...|+..+|+..+...+.. . +
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 3445789999999999999999999999987632 566777788899999999999988888761 0 0
Q ss_pred -------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696 149 -------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (438)
Q Consensus 149 -------------------------~~~~a~~~lg~a~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 195 (438)
...++++.+|.....+ +.+++++..|..++.++|....++..++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 1145677888877777 8889999999999999998887766655443
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.48 E-value=3.2 Score=39.96 Aligned_cols=116 Identities=17% Similarity=0.019 Sum_probs=83.3
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-------cHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----h
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-------KFKEAIDCYSRSIALSPTAVAYANRAMAYLK----L 130 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-------~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l 130 (438)
.++.+|..+|.++-...-... +...+.+|..|..-. +...|+..|.++.... .+.+.+++|.+|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCC
Confidence 388999999999988753221 233557777776641 3347888998887755 47788889988865 3
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhhCC
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---------------KLKESIEDSEFALRLEP 182 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg---------------~~~eA~~~~~~al~l~P 182 (438)
.++.+|..+|.+|-.... ..++++++ ++...| +...|..++..+-...+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 489999999999999887 88899999 666555 44555555555544443
No 298
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.43 E-value=2.1 Score=42.93 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcc----CCC-HHHHHHHHHHHHH---hcCHHHHHHHHHH-HhhcCCccHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTE-ALNLDDRYIKAYSRR 157 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~----~p~-~~~~~~la~~~~~---l~~~~eA~~~~~~-al~l~p~~~~a~~~l 157 (438)
..++-..|....+|+.=+...+..-.+ .+. ..+.+..|.++.+ .|+.++|+..+.. .....+.++..+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 456667788888998888887766555 222 5667777888888 8999999999988 445567788899999
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHhhCCCC
Q 013696 158 ATARKEL---------GKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 158 g~a~~~l---------g~~~eA~~~~~~al~l~P~~ 184 (438)
|.+|..+ ...++|+.+|.+++.++|+.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9888643 23578888888888888654
No 299
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.41 E-value=0.21 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
.+|..+|.+-...++|++|+.+|.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888663
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.22 E-value=1.8 Score=46.02 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=90.2
Q ss_pred cCCCCCCcCcCC------CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhccCCCHHHHH
Q 013696 51 AKKPSPSGNSYS------RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAYA 121 (438)
Q Consensus 51 ~~~~~~~~y~~g------~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~~~p~~~~~~ 121 (438)
+..++|.+|..| ++..|..+|.++-... ++.+ .+.+|.++..-. ++..|..+|..|.... ...+++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~ 364 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIY 364 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHH
Confidence 445666666322 6778999999988766 4556 558899988765 6889999999987632 277888
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 013696 122 NRAMAYLKL----RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALRL 180 (438)
Q Consensus 122 ~la~~~~~l----~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l-g~~~eA~~~~~~al~l 180 (438)
++|.||..- .+...|..++.++...+ ++.+.+.++..+... +++..+...+...-.+
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 899998753 48999999999999987 677777777766544 7777666555544333
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.93 E-value=7.5 Score=39.66 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=92.3
Q ss_pred cCCC-ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHH--HHHHhcc---------CCC----HHHHHHH
Q 013696 60 SYSR-NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR 123 (438)
Q Consensus 60 ~~g~-~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~--y~~al~~---------~p~----~~~~~~l 123 (438)
..|. -++|++.++.++...+.+..... -...+-...|.+|+.. +.+.+.+ .|- ...-..+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n----~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECEN----IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 4554 77889999999888877765422 2333444556666543 2333332 222 2332223
Q ss_pred --HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696 124 --AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (438)
Q Consensus 124 --a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka 201 (438)
|.-++..|+|.++..+..=..+++| .+.+|..+|.++...++|++|..++.. +-|++........+|..+..+-
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999 899999999999999999999998864 4443333344666777766654
Q ss_pred Hh
Q 013696 202 VF 203 (438)
Q Consensus 202 ~~ 203 (438)
+.
T Consensus 543 ~~ 544 (549)
T PF07079_consen 543 LP 544 (549)
T ss_pred hh
Confidence 43
No 302
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.59 E-value=0.68 Score=36.72 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 152 KAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
.+..++|.++...|++++|+..+++++++.
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555555555566666666666655554
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.55 E-value=1.1 Score=39.26 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=61.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~ 134 (438)
..++.+++...+.-.--+.|+.+.... ..|+.++..|+|.+|+..++......|. +.+-..++.|+..+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 345677777887777778999999854 8899999999999999999998888887 777788899998888743
No 304
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.50 E-value=1.4 Score=33.71 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
....|.-++...+..+|+..++++++..++ -.++..+..+|...|+|.+.+.+.-+=+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888899999888887766 34455556777788888887776554443
No 305
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=2.3 Score=40.96 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH---HHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR---RATARK 162 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~---lg~a~~ 162 (438)
-...|......|++.+|...|..++...|. ..+...++.||+..|+++.|...+...=.-.. .+.+.. .-..+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~ 214 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHH
Confidence 346778889999999999999999999998 89999999999999999998776665322111 122222 112233
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 163 ELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 163 ~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
......+ ...+.+.+.-+|++.++.
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd~~aa 239 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDDVEAA 239 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCCHHHH
Confidence 3333222 246778889999998873
No 306
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.32 E-value=0.82 Score=43.58 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 105 ~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
.+|.+|+.+.|. ...|..+|.++...|+.-.|+-+|-+++
T Consensus 3 ~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 334444444443 3334444444333344444444344433
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.23 E-value=1.4 Score=34.97 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=48.8
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~ 150 (438)
....+.|+|..|++.+.+.+..... ..+..++|.++...|++++|+..++.|+.+....
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3457889999999998888876422 3667889999999999999999999999886554
No 308
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.94 E-value=0.77 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 013696 152 KAYSRRATARKELGKLKESIED--SEFALRLEPQN 184 (438)
Q Consensus 152 ~a~~~lg~a~~~lg~~~eA~~~--~~~al~l~P~~ 184 (438)
+.++.+|..+...|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 43666666543
No 309
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.75 E-value=0.26 Score=49.25 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCCcCcCCCccchHHHHHhhhcCCC--------CChh--------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H
Q 013696 55 SPSGNSYSRNYDPVSHISSSLMNEE--------STPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A 117 (438)
Q Consensus 55 ~~~~y~~g~~~eAi~~~~~al~~~p--------~~~~--------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~ 117 (438)
...+|++++|..|+..|..+|++-. ..+. ....-.+..||.+.++.+.|+.+-.++|.++|. .
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 3344788888888888888877421 1111 122446788999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
.-+...|.|+..+.+|.+|-.-+.-|.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999977666554
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.58 E-value=1.9 Score=44.31 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=72.4
Q ss_pred chHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC-HHHHHHHHHHH
Q 013696 66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEA 143 (438)
Q Consensus 66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~-~~eA~~~~~~a 143 (438)
.-...|+.++...+.+... |......+.+.+.|.+--..|.+++...|+ +.+|..-|.-.+..+. .+.|...+.++
T Consensus 89 rIv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3456889999888777776 557766667777799999999999999999 8898888877777665 99999999999
Q ss_pred hhcCCccHHHH
Q 013696 144 LNLDDRYIKAY 154 (438)
Q Consensus 144 l~l~p~~~~a~ 154 (438)
|+.+|++++.|
T Consensus 167 LR~npdsp~Lw 177 (568)
T KOG2396|consen 167 LRFNPDSPKLW 177 (568)
T ss_pred hhcCCCChHHH
Confidence 99999998764
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.31 E-value=0.45 Score=31.04 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
.+|..+|.+.+..++|.+|+.+|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777788888877777765
No 312
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=1.7 Score=41.36 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|-+.-|+.+++..+..-|+.+.+-.-++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 456667788899999999999999999999 8889999999999999999999999999999999877655543
No 313
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=4.4 Score=38.44 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred HHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-HHH
Q 013696 95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI 171 (438)
Q Consensus 95 ~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~-eA~ 171 (438)
.+...-..|+..-..+|.++|. -.+|..+-.|+..++ +..+-+++++..+.-+|.|...|+-+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3445556778888889999998 666766666666665 6777889999999999999999999999999999988 788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696 172 EDSEFALRLEPQNQEIKKQLAEVKSLY 198 (438)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (438)
+....++..+..|-.++....=+.+.|
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F 160 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFF 160 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHH
Confidence 999999999998887765544444433
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.79 E-value=8.9 Score=37.79 Aligned_cols=111 Identities=11% Similarity=-0.014 Sum_probs=79.3
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHHHh------------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696 69 SHISSSLMNEESTPDATSEKELGNECFKQ------------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (438)
Q Consensus 69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~------------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e 135 (438)
..|++.+..+|.+..+ |..+....-.. .-.+..+..|++||+.+|+ ..++..+-.++.+..+-+.
T Consensus 6 ~el~~~v~~~P~di~~--Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEA--WLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHH--HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4577888889998887 33444332221 2256778899999999998 6666666666677778888
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARK---ELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~---~lg~~~eA~~~~~~al~l~ 181 (438)
...-.++++..+|+++..|..+-.... ..-.+......|.++|+.-
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 899999999999999887765443333 2345778888888887654
No 315
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=9.6 Score=39.24 Aligned_cols=122 Identities=15% Similarity=0.057 Sum_probs=90.9
Q ss_pred cCCCccchHHHHHhhhcCCC-CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------HHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AVAYANRAMAY 127 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------~~~~~~la~~~ 127 (438)
..+.|+.|...|..+++.-. .+..+..-.++|..|.+.|+-+.--+..+. +.|. +.+++..|.-.
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 67889999999999987542 233444456889999998876553333322 3332 56788889999
Q ss_pred HHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 128 LKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 128 ~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
++.+++.||.....+.+++... ..-.+..+|.+..-+|+..++....+-++.+....
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 9999999999999999987621 12345567888889999999999999999887443
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.50 E-value=1.1 Score=42.60 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013696 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197 (438)
Q Consensus 136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~ 197 (438)
|+.+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++...-..+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998776667777666655543
No 317
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.48 E-value=2.1 Score=42.93 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC----C----ccHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----D----RYIKAY 154 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~----p----~~~~a~ 154 (438)
+.++|.-|...|+.+.|+++|.++-..... ...+.|+-.+-..+|+|..-..+-.+|.+.- . -.++..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 679999999999999999999997666554 6678888888889999998888888777651 0 123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 013696 155 SRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 155 ~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
..-|.+...+++|..|..+|-.+
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 66778888888999998887554
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.02 E-value=4.6 Score=34.95 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=60.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
.....-...++.+++.......--+.|+ +.+-..-|..+...|+|.+|+..++....-.+..+.+--.++.|++.+|+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 4444444577777777777776667788 777777788888888888888888888887777777777788888888875
Q ss_pred H
Q 013696 168 K 168 (438)
Q Consensus 168 ~ 168 (438)
.
T Consensus 95 ~ 95 (153)
T TIGR02561 95 E 95 (153)
T ss_pred H
Confidence 3
No 319
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.89 E-value=7 Score=37.62 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=69.8
Q ss_pred HHHhccHHHHHHHHHHHhccC----CC-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhc----CC---c-------
Q 013696 94 CFKQKKFKEAIDCYSRSIALS----PT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DD---R------- 149 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~----p~-----~~~~~~la~~~~~l~-~~~eA~~~~~~al~l----~p---~------- 149 (438)
..++|+++.|..+|.++-... |+ +..+++.|...+..+ +++.|..++++|+.+ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 367899999999999887643 54 678999999999999 999999999999987 22 1
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHH
Q 013696 150 YIKAYSRRATARKELGKLK---ESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 150 ~~~a~~~lg~a~~~lg~~~---eA~~~~~~al~l~P~~~~~ 187 (438)
....+..++.+|...+.++ +|...++.+-.-.|+.+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 1345777888998888765 3444444444445665544
No 320
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.89 E-value=6.4 Score=38.78 Aligned_cols=119 Identities=8% Similarity=0.011 Sum_probs=84.4
Q ss_pred ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH---HHHHHhcCHHHHHHH
Q 013696 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA---MAYLKLRRFQEAEDD 139 (438)
Q Consensus 64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la---~~~~~l~~~~eA~~~ 139 (438)
.+.-+..|++||..+|++.... ..+-..+.+..+-+.....+++++..+|+ ..+|...- ...+..-.+......
T Consensus 47 ~E~klsilerAL~~np~~~~L~--l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLL--LGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4556889999999999877763 34445556667788888999999999998 55543322 222223356677777
Q ss_pred HHHHhhcC------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 140 CTEALNLD------------------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 140 ~~~al~l~------------------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
|.+++..- ......+.+++.-....|..+.|+..++-.++++=-.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 77776431 1124567788888899999999999999999998433
No 321
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=15 Score=37.05 Aligned_cols=131 Identities=17% Similarity=0.112 Sum_probs=94.5
Q ss_pred chHHHHHhhhcCCCCChhHHHHHHHHH----------HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--C
Q 013696 66 DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--R 132 (438)
Q Consensus 66 eAi~~~~~al~~~p~~~~a~~~~~~g~----------~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--~ 132 (438)
++++.-.+.+..+|....++.+..... -..+..-.++-+.+...++..+|+ ..+|+.+..++.+.+ +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 455666666677776655533222111 112233467778889999999999 889999999998877 4
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~----~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
+..=+..|.++++.||.+.-+|..+-.+...... ..+=+++..+++.-++.|-.+|....-++.
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 7888999999999999999888766655554433 467788888999889999888766555544
No 322
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.03 E-value=2.8 Score=42.49 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccC--------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALS--------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~ 156 (438)
+..+...+.-.|+|..|++.... |.++ |. ...++..|-||+.+++|.+|+..|...+..-...-..+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34555667789999999998654 2222 22 4678899999999999999999999887432221111122
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 013696 157 RATARKE-LGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 157 lg~a~~~-lg~~~eA~~~~~~al~l~P~ 183 (438)
+..-+-. .+..++....+--++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 2222222 24456666677777777785
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.82 E-value=3 Score=36.07 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=57.8
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~ 133 (438)
.++.+++...+...--+.|+.+.... .-|..++..|+|.+|+..++....-.+. +..-..++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 45666777777666668899988854 8899999999999999999999887777 77777788898888764
No 324
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.78 E-value=5.1 Score=40.18 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=25.5
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 74 SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 74 al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
.|..+|-+.+. +..++.++..+|+++.|.+..++||-
T Consensus 32 ll~~~PyHidt--Llqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 32 LLQKNPYHIDT--LLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666 56778888888887777777777654
No 325
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.66 E-value=3.5 Score=44.08 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l 164 (438)
.++.++|..+.....|++|.++|..+-.. -+...||+++..|++-+.... .=|++.+.+-.+|.++...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhh
Confidence 33677888888888888888888765332 345667777777776444332 2377778888889999999
Q ss_pred CCHHHHHHHHHH
Q 013696 165 GKLKESIEDSEF 176 (438)
Q Consensus 165 g~~~eA~~~~~~ 176 (438)
|.-++|++.|-+
T Consensus 866 GMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 866 GMCDQAVEAYLR 877 (1189)
T ss_pred chHHHHHHHHHh
Confidence 999999888754
No 326
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=0.61 Score=45.74 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=82.5
Q ss_pred CcCCCccchHHHHHhhhcCCC---CC------------h--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHH
Q 013696 59 NSYSRNYDPVSHISSSLMNEE---ST------------P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY 120 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p---~~------------~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~ 120 (438)
|..++|..|..-|.+++..-. .. . ......+.+.+-++.+.|..|+..-..+++.++. ..++
T Consensus 233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~ 312 (372)
T KOG0546|consen 233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAH 312 (372)
T ss_pred hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHH
Confidence 366777777777766654211 00 0 0111446778888899999999988888887777 8999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
+.++..|..+.++++|++++..+....|++......+..+......+
T Consensus 313 ~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 313 YRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred HHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999988777666666555544
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.82 E-value=9.1 Score=39.34 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=87.0
Q ss_pred HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~ 172 (438)
.+..|+.-.|-.-...+++..|. +.....++.++..+|.|+.|..+..-+-.+-....++..-+-....++|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45578888888888899998888 77777889999999999999998877766555555565556666789999999998
Q ss_pred HHHHHHhhCCCCHH----------HHHHHHHHHHHHHHHHhhc
Q 013696 173 DSEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 173 ~~~~al~l~P~~~~----------~~~~l~~a~~~~~ka~~~~ 205 (438)
.-.-.|.-+-.+++ .++..+++.-.+.+...++
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88777755544444 3777788888887776665
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.61 E-value=1.2 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 013696 155 SRRATARKELGKLKESIE 172 (438)
Q Consensus 155 ~~lg~a~~~lg~~~eA~~ 172 (438)
+.+|.++...|++++|..
T Consensus 5 ~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 5 LALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 334444444444444433
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.41 E-value=1.1 Score=26.30 Aligned_cols=24 Identities=29% Similarity=-0.006 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
.+.+++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 568899999999999999998775
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.36 E-value=4 Score=41.59 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=49.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~a 143 (438)
..-|..+|.+|+|.++..+-.-..++.|.+.+|..+|.|++...+|++|-.++...
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455678899999999998889999999999999999999999999999887654
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.25 E-value=5 Score=38.63 Aligned_cols=64 Identities=19% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
..++..++..+...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999999999999999999987664
No 332
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.06 E-value=5.4 Score=42.93 Aligned_cols=115 Identities=16% Similarity=0.038 Sum_probs=73.9
Q ss_pred CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 013696 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131 (438)
Q Consensus 53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~ 131 (438)
..++.-| ..|+|+-|.++|.++-. .+.--..|-+.|+|.+|.+.-.++..-......|...+.-+-..|
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 3444556 78999999999877522 223345667789999988877766442222566777777777777
Q ss_pred CHHHHHHHH------HHHhhcC-----------------Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 132 RFQEAEDDC------TEALNLD-----------------DR-YIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 132 ~~~eA~~~~------~~al~l~-----------------p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
+|.+|++.| .+||++. |+ ......++|.-|...|+.+.|...|-++
T Consensus 839 kf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 777765543 2222221 11 1345677888888888888888777655
No 333
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.74 E-value=2.6 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhccHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDC 106 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~ 106 (438)
++.+|..++.+|+|++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44555555555555555555
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.99 E-value=46 Score=35.89 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=86.4
Q ss_pred cchHHHHHhhhcCCC--CChhHHHHHHHHHHHH-HhccHHHHHHHHHHHhccCC--C-----HHHHHHHHHHHHHhcCHH
Q 013696 65 YDPVSHISSSLMNEE--STPDATSEKELGNECF-KQKKFKEAIDCYSRSIALSP--T-----AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 65 ~eAi~~~~~al~~~p--~~~~a~~~~~~g~~~~-~~g~y~~Ai~~y~~al~~~p--~-----~~~~~~la~~~~~l~~~~ 134 (438)
..|+.+++-+++..+ ...++.....+|.+++ ...+++.|..+..+++.+.. + -.+.+-++.+|.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777774222 2345677889999988 67899999999999988863 3 344566788888888777
Q ss_pred HHHHHHHHHhhcCCc----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHH
Q 013696 135 EAEDDCTEALNLDDR----YIKAYSRRA--TARKELGKLKESIEDSEFALRLE--PQNQEI 187 (438)
Q Consensus 135 eA~~~~~~al~l~p~----~~~a~~~lg--~a~~~lg~~~eA~~~~~~al~l~--P~~~~~ 187 (438)
|...++++|..-.+ .....+++- ..+...+++..|++.++....+. .+++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 99999999987544 233334433 22223379999999999998877 455544
No 335
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.93 E-value=13 Score=39.50 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
.++.|-|.-+++..+|..++++|...+..-|.+ .+....++.||.++.+.+.|+++++.|-+.+|.++-.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 456677888999999999999999999876643 67788999999999999999999999999999887543
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=12 Score=37.81 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=92.8
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc--HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh-cC---HH
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK--FKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RR---FQ 134 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~--y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l-~~---~~ 134 (438)
.-+++-+.+...++..+|+...+ |+.+..++.+.+. +..=+....++++.+|. -.+|..+=.++... .. ..
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~a--W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGA--WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHH--HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 35677788899999999998888 7788898887764 57788999999999998 44443333333222 22 66
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHhhCCCCHHHH
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATARKEL------GK------LKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~l------g~------~~eA~~~~~~al~l~P~~~~~~ 188 (438)
+=+++++++|.-++.|.-||+.+..++..+ |+ ...-++....|+-.+|++..++
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W 232 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW 232 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence 778899999999999999999999888732 31 2345556666777777776664
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.31 E-value=21 Score=31.93 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEIKKQL 191 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l 191 (438)
..++..+|.-|.+.|+++.|++.|.++...... -...++++-.+....|++..+..++.++-.+- +++.+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 678999999999999999999999998876532 24667888888889999999999999987664 3444444444
Q ss_pred H
Q 013696 192 A 192 (438)
Q Consensus 192 ~ 192 (438)
.
T Consensus 116 k 116 (177)
T PF10602_consen 116 K 116 (177)
T ss_pred H
Confidence 3
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.24 E-value=7.5 Score=42.49 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh----------hcCC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEAL----------NLDD----------RYIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al----------~l~p----------~~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
-..|++.|.-+...++.+.|+++|+++- .-+| .+...|...|.-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 5678888888888888888888888762 2233 2345566678888888998888888877
Q ss_pred HHh
Q 013696 177 ALR 179 (438)
Q Consensus 177 al~ 179 (438)
|-.
T Consensus 938 A~D 940 (1416)
T KOG3617|consen 938 AKD 940 (1416)
T ss_pred hhh
Confidence 643
No 339
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=3.4 Score=46.00 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=70.2
Q ss_pred cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696 51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK 129 (438)
Q Consensus 51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~ 129 (438)
.+.+++.+- ..|...+|++.|-++ +++.. |.+.-....+.|+|++-+.++.-+-+....+.+-..+-.+|.+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~--y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSN--YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 345555554 567778888888665 33444 4466677777888888887776665543222222222223333
Q ss_pred hcCHHHHHHHH----------------HH----HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 130 LRRFQEAEDDC----------------TE----ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 130 l~~~~eA~~~~----------------~~----al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
.++..+-+... +. |-++--.++..|.++|..+..+|.|+.|...-++|-..
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 33332221110 00 00111134556788999999999999999988887544
No 340
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.63 E-value=20 Score=36.12 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=83.7
Q ss_pred cCCCccchHHHHHhhhcC-CCCC------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-----CCC--HHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMN-EEST------PDATSEKELGNECFKQKKFKEAIDCYSRSIAL-----SPT--AVAYANRAM 125 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~-~p~~------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-----~p~--~~~~~~la~ 125 (438)
.+.++.+|...-+..+.. .-.+ ..+..|+.+...|-..|+...--..+...+.. +.. +.+.+.+-.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 446667766666555431 1011 12333666666777777755444444333332 222 666777788
Q ss_pred HHHHhcCHHHHHHHHHHHhhcCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 126 AYLKLRRFQEAEDDCTEALNLDD----RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 126 ~~~~l~~~~eA~~~~~~al~l~p----~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
+|+..+.|+.|.....++.--+. ..+..+|.+|.+..-+++|..|.++|-.|++..|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 99999999999988887763221 235567889999999999999999999999999984
No 341
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.53 E-value=6.8 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|..+-+.|+|.+|+.+|+.+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556666667777777776655443
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.21 E-value=14 Score=41.80 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=91.2
Q ss_pred cCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHh-------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~-------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l 130 (438)
.-..|+.|+..|++.-...|...+. .+.+..|..+..+ ..+.+|+.-|++... .|. +--|...|.+|..+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence 4467999999999988888776542 2256777776553 257888888877543 344 66699999999999
Q ss_pred cCHHHHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKA-------YSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a-------~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 187 (438)
|+|++-++++.-|++..|++|.. .+|+-.+.+.. -..|....--++.+.|.....
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS 627 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence 99999999999999999988754 34444444332 245667777788888876543
No 343
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.03 E-value=5 Score=30.48 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 168 KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
++|++.+.+++.+.|+++....-...+.++.+++-.+.
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk 67 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLE 67 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788888876666666667666665544
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.92 E-value=5.7 Score=38.25 Aligned_cols=57 Identities=25% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
.-.+..|+..|.+.+|+..+++++.++|-+-..+..+-.++..+|+--.|+..|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344677788888888888888888888888888888888888888876666666543
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.55 E-value=7.4 Score=36.77 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
..+...+|.-|+..|+|+.|+..++.+...... .......+..|+..+|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445566777777777777777777777543221 1345566677777777776666554443
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.34 E-value=6.1 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 155 SRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 155 ~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788889999999999999998884
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.20 E-value=16 Score=36.65 Aligned_cols=97 Identities=15% Similarity=-0.039 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC-----ccHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD-----RYIKAYSRRA 158 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p-----~~~~a~~~lg 158 (438)
++.....+.+.|-|..|+++.+-.+.++|. -.+.+.+-...++.++|+=-+..++....... .-|...+.++
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 556667778899999999999999999997 34456666677778888877877777655211 1345678899
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 013696 159 TARKELGKL---------------KESIEDSEFALRLEPQ 183 (438)
Q Consensus 159 ~a~~~lg~~---------------~eA~~~~~~al~l~P~ 183 (438)
.++..+++- +.|...+.+|+...|.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 999999998 7888888888888774
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.90 E-value=8.6 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013696 101 KEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 101 ~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~----~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
+.|...|-++-. .|. +...+.+|..|. ..+.+.|+..+-+++.+.+. ++..+..++.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666644332 233 777777777665 56778888888888877543 4778888888888888888875
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.25 E-value=15 Score=28.22 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhh
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg---~a~~~lg~~~eA~~~~~~al~l 180 (438)
....|.-++..++.++|+...+++++..++....+..+| .+|...|+|.+++.+.-+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888999999999999998887766555544 6678889998888776554433
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.22 E-value=42 Score=37.24 Aligned_cols=114 Identities=21% Similarity=0.040 Sum_probs=86.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCC--C--------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-----HH
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSP--T--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----IK 152 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p--~--------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-----~~ 152 (438)
...++......+|.+|-.+..++..--+ . +....-+|.+....|+++.|+..++.++..=|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 4567888888999999888777655321 1 4556667899999999999999999999877654 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHH
Q 013696 153 AYSRRATARKELGKLKESIEDSEFALRL----EPQNQEIKKQLAEVKSLYEKE 201 (438)
Q Consensus 153 a~~~lg~a~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~a~~~~~ka 201 (438)
++...|.+..-.|++.+|..+...+.++ +...-.++..+.++.-+..++
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999999999999998887 443444455555555544444
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.99 E-value=16 Score=37.20 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-------CC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 79 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-------PT-------AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 79 p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-------p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
|+......-.+.=..+....+..+-++.+..+...+ .. --+...+..++.-+|+|..|++..+..
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i- 148 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI- 148 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc-
Confidence 444444332233334455556666666665532111 11 122344557788899999999876543
Q ss_pred hcC---------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 145 NLD---------DRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 145 ~l~---------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
.++ +-++..+|..|.+|..+++|.+|+..|..+|-.
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 234667999999999999999999999998743
No 352
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.94 E-value=14 Score=36.31 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 99 KFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 99 ~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l--~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
+|..=...|.-...+.|++.+-.|++.+.-+..-...++...+....- =..+...+..+|..+.++|+..+|...|++
T Consensus 311 DW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 311 DWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred ChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
Confidence 566666677777777888777788888877777777777766665543 234566778899999999999999999999
Q ss_pred HHhhCCCCHHH
Q 013696 177 ALRLEPQNQEI 187 (438)
Q Consensus 177 al~l~P~~~~~ 187 (438)
++.+.++..+.
T Consensus 391 Ai~La~~~aer 401 (415)
T COG4941 391 AIALARNAAER 401 (415)
T ss_pred HHHhcCChHHH
Confidence 99999987665
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.47 E-value=21 Score=32.63 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=44.7
Q ss_pred CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHHH
Q 013696 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA~ 137 (438)
.-++|...|-++-. .|....+...+.+|..|. ..+-++|+..|.+++++.+. +.++..++.+|.++|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34455555554432 233334444455555444 56677778888888777532 677777888888888777764
No 354
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.95 E-value=3.7 Score=39.81 Aligned_cols=84 Identities=11% Similarity=0.176 Sum_probs=67.2
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH-HHHHHHHhcCHHHHHHHHHHHhhcCC
Q 013696 71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN-RAMAYLKLRRFQEAEDDCTEALNLDD 148 (438)
Q Consensus 71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~-la~~~~~l~~~~eA~~~~~~al~l~p 148 (438)
|.++-...++++.. |...++.-.+.|.|.+--..|.+++...|. ..+|.. -+.-|...++++.+...+.++++++|
T Consensus 96 ~~R~tnkff~D~k~--w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKI--WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34444456677777 447777778888999999999999999998 766654 45667778899999999999999999
Q ss_pred ccHHHHHH
Q 013696 149 RYIKAYSR 156 (438)
Q Consensus 149 ~~~~a~~~ 156 (438)
+++..|+.
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 99987653
No 355
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.62 E-value=23 Score=37.41 Aligned_cols=106 Identities=20% Similarity=0.038 Sum_probs=83.5
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHH-HhccCCC-HHHHH------HHHHHHHHhc
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR-SIALSPT-AVAYA------NRAMAYLKLR 131 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~-al~~~p~-~~~~~------~la~~~~~l~ 131 (438)
..++...+......++..+|.+..+ ..++|......|....++..+.. +....|. ..... .+|.....++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPA--VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchH--HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 6677888899999999999999888 44888888888887777776665 7777777 33333 3588888889
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
+..++.....++..+.|.++.....+..+..+.-.+
T Consensus 157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 157 RTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 999999999999999999987776666666666555
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.58 E-value=10 Score=38.12 Aligned_cols=147 Identities=16% Similarity=0.061 Sum_probs=92.3
Q ss_pred CCCCcC-cCCCccchHHHHHhhhcCCCCCh-hHHHHHHHHHHHHHhccHHHHHHHHHHHhcc----C---CC--HHHHHH
Q 013696 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIAL----S---PT--AVAYAN 122 (438)
Q Consensus 54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~----~---p~--~~~~~~ 122 (438)
.+|.-| ..|+++.|+..|.++-..--... .+..+.++-.+..-.|+|..-..+-.+|.+. . +. +.+.+.
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 345556 78999999999998543221111 1333556666777789998888887777765 1 11 566777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhc--------CCccHHHHHHHHHH-HHHcCCHH---HHHHHHHHHHhhCCCCHHH---
Q 013696 123 RAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATA-RKELGKLK---ESIEDSEFALRLEPQNQEI--- 187 (438)
Q Consensus 123 la~~~~~l~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~a-~~~lg~~~---eA~~~~~~al~l~P~~~~~--- 187 (438)
-|.+.+.+++|..|..+|-.+..- .|.+..+|..+... -+...++. ..-..|+..+++.|.-.+.
T Consensus 235 agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~ 314 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFK 314 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHH
Confidence 788888999999999988777532 35556565554321 11111222 2334577788888877655
Q ss_pred --HHHHHHHHHHHHH
Q 013696 188 --KKQLAEVKSLYEK 200 (438)
Q Consensus 188 --~~~l~~a~~~~~k 200 (438)
...++.++..+.+
T Consensus 315 fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 315 FYSSKYASCLELLRE 329 (466)
T ss_pred HhhhhHHHHHHHHHH
Confidence 3455555555543
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.30 E-value=16 Score=37.00 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-CCC--HHHHHHHHH--HHHHhcCHHHHHHHHHHHhhc
Q 013696 79 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT--AVAYANRAM--AYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 79 p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-~p~--~~~~~~la~--~~~~l~~~~eA~~~~~~al~l 146 (438)
|....+......+..+++.++|..|...+..++.. .+. ...+..++. -+...-+|.+|.+.++..+..
T Consensus 126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 43334444667788889999999999999998885 443 234555544 444567899999999888764
No 358
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.93 E-value=8.1 Score=44.23 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred CCCccchHHHHHhhhc--------CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-------CC-C-HHHHHHH
Q 013696 61 YSRNYDPVSHISSSLM--------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SP-T-AVAYANR 123 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~--------~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-------~p-~-~~~~~~l 123 (438)
.|.+.+|.+ .-+++. +.|..... +..++..+...|++++|+..-.++.-+ ++ + ...|.++
T Consensus 945 e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~--~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 945 EDGFSEAYE-LPESLNLLNNVMGVLHPEVASK--YRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred ccchhhhhh-hhhhhhHHHHhhhhcchhHHHH--HHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 455666666 333333 33443444 779999999999999999986665544 32 2 7789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 124 AMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 124 a~~~~~l~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
+...+..++...|...+.+++.+. |.-.....+++.++..+++++.|+.+++.|+.++
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888653 4445567889999999999999999999999865
No 359
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.27 E-value=62 Score=34.26 Aligned_cols=111 Identities=8% Similarity=-0.050 Sum_probs=86.2
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CC-HHHHHHHHHHHHHhcCHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~-~~~~~~la~~~~~l~~~~eA~ 137 (438)
..|++....-.|++++---....+. |...+.-....|+..-|-..+.++.++. |. +.+...-+..--..|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~ef--Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEF--WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHH--HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 6788888888888887644444455 5566666666788888888888888876 44 666666666667788999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (438)
Q Consensus 138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~ 172 (438)
..+++...--|+...+-.+.....+.+|+.+.+..
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 99999988779888888888888888898888874
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.37 E-value=13 Score=35.90 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
+..++..+...|+++.++..+.+.+.++|. ..+|..+-..|+..|+...|+..|.+.-..
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 567788888999999999999999999998 888999999999999999999988877543
No 361
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.26 E-value=17 Score=41.70 Aligned_cols=100 Identities=24% Similarity=0.260 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHH------HHHHHhc-cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC------
Q 013696 82 PDATSEKELGNECFKQKKFKEAID------CYSRSIA-LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------ 147 (438)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~y~~Ai~------~y~~al~-~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~------ 147 (438)
..+......|.....+|.+.+|.+ .+.+... +.|. +..|..++..+..++++++|+....+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 344446677888888888887777 4443322 3455 7889999999999999999999988886443
Q ss_pred --CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 148 --DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 148 --p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
|+....|.+++......++...|...+.+++.+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 4557789999999999999999999999988764
No 362
>PF13041 PPR_2: PPR repeat family
Probab=73.32 E-value=13 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccC--CCHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALS--PTAVAYANR 123 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~~~~~~~l 123 (438)
|..+-..|.+.|++++|.+.|++..+.. |+...|..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5566667777777777777777776643 554444433
No 363
>PF12854 PPR_1: PPR repeat
Probab=72.61 E-value=9.3 Score=23.90 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696 115 PTAVAYANRAMAYLKLRRFQEAEDDCT 141 (438)
Q Consensus 115 p~~~~~~~la~~~~~l~~~~eA~~~~~ 141 (438)
|+...|..+-.+|.+.|+.++|.+.++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444555555555555666666555554
No 364
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=71.95 E-value=52 Score=34.56 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=59.6
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 72 ~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
++-++.+|.+..+ |+.+-.-+-.+ .+++....|++.+...|. +.+|..-...-+..++|+..+..|.++|.
T Consensus 10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5667888988888 55665555444 999999999999999999 88888888888899999999999999984
No 365
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.85 E-value=24 Score=33.23 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696 154 YSRRATARKELGKLKESIEDSEFALRLE 181 (438)
Q Consensus 154 ~~~lg~a~~~lg~~~eA~~~~~~al~l~ 181 (438)
...+|.-|...|+|++|+..|+.+....
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~y 208 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSY 208 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4456666666666666666666665443
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.13 E-value=47 Score=32.12 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHH------HHHHHHHHcCCHHHHHHHHHHHH
Q 013696 132 RFQEAEDDCTEALNLDDRYIKAYS------RRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 132 ~~~eA~~~~~~al~l~p~~~~a~~------~lg~a~~~lg~~~eA~~~~~~al 178 (438)
.++.-+..++.+++.....-..+. .+..+++..|+|.+|+....-.+
T Consensus 100 sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 100 SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445555555555544333322222 35567778888888887766554
No 367
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.47 E-value=22 Score=30.62 Aligned_cols=50 Identities=26% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~ 166 (438)
......++...+..|+|.-|...++.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666666666666666665555555555544
No 368
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=68.37 E-value=11 Score=29.39 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=34.0
Q ss_pred hHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHHhccCCchh
Q 013696 348 PQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFD 392 (438)
Q Consensus 348 ~~lf~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~ 392 (438)
..+=+..++|++|.-|+..|+-.+. |+.|+++|..+|...|-+
T Consensus 34 a~~AGv~~dp~VFriildLL~~nVs--P~AI~qmLK~m~s~~~~~ 76 (88)
T PF12926_consen 34 AQLAGVPMDPEVFRIILDLLRLNVS--PDAIFQMLKSMCSGSRLA 76 (88)
T ss_pred HHHhCCCcChHHHHHHHHHHHcCCC--HHHHHHHHHHHHcccccC
Confidence 3444567889999888888876665 678999999999888764
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.13 E-value=64 Score=35.84 Aligned_cols=117 Identities=13% Similarity=-0.028 Sum_probs=84.0
Q ss_pred cCCCccchHHHHHhhhcCCCC--C-----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEES--T-----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 126 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~--~-----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~ 126 (438)
..+++.+|..+..++...-+. . ..+...-..|.+....|+.+.|++..+.++..-|. ..++...|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 667888888887776542221 1 12222336688889999999999999999998765 6778999999
Q ss_pred HHHhcCHHHHHHHHHHHhhcC----Ccc--HHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 013696 127 YLKLRRFQEAEDDCTEALNLD----DRY--IKAYSRRATARKELG--KLKESIEDSEF 176 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~----p~~--~~a~~~lg~a~~~lg--~~~eA~~~~~~ 176 (438)
..-.|++.+|..+...+.++. .-+ .-+.+..+.++..+| .+.+....|..
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999988888773 222 234455688888889 34444444443
No 370
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.95 E-value=92 Score=28.21 Aligned_cols=95 Identities=15% Similarity=0.003 Sum_probs=54.6
Q ss_pred CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH-----hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc------
Q 013696 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFK-----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR------ 131 (438)
Q Consensus 63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~-----~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~------ 131 (438)
+|++|...|..--..+ ..+.. .+-+|+.++. .++...|+++|..+...+- +.+..++|+++..-.
T Consensus 50 nF~~A~kv~K~nCden-~y~kS--CyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~-~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN-SYPKS--CYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI-PQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHhccccc-CCcHH--HHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-HHHHhhhhhhhccCcCCccCC
Confidence 4455555554443322 22233 5566665543 4567888888888776432 555555665554321
Q ss_pred -CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696 132 -RFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (438)
Q Consensus 132 -~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~ 163 (438)
+...|+.+++++-.++ +..+.+.+...|..
T Consensus 126 pd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred CCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 3678888888887764 45555565555543
No 371
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.25 E-value=59 Score=32.96 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCccchHHHHHhhhc--CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC
Q 013696 62 SRNYDPVSHISSSLM--NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (438)
Q Consensus 62 g~~~eAi~~~~~al~--~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~ 116 (438)
+.|+.|-....++.- ...++.+++.++.+|.+..-+++|..|.+++..|+...|+
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 445555444444331 1223344555566666666666666666666666666664
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.23 E-value=30 Score=31.07 Aligned_cols=51 Identities=24% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
....++..++.+...| ++..+.+++.++..+|+.++|.....++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3445566677777777 68888999999999999999999999999999943
No 373
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.13 E-value=34 Score=32.03 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=59.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
+.|+|+.|++...-+|..+-..|+- +..-.-+++-..=++-|...+...-..+ .++.... ..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~--f~R~~~t~vaeev~~~A~~~~~ag~~~e----~~~~~~~------------~~ 156 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQ--FRRTLANFVAEEVANAALKAASAGESVE----PYFLRVF------------LD 156 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCcc--ccCCchHHHHHHHHHHHHHHHHcCCCCC----hHHHHHH------------HH
Confidence 8899999999999999977555543 2221222222222233333332221111 2221111 00
Q ss_pred HHHHhhcCCccHH--HHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696 140 CTEALNLDDRYIK--AYSRRATARK---------ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (438)
Q Consensus 140 ~~~al~l~p~~~~--a~~~lg~a~~---------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (438)
...-.. -|+.+. .|-..|.++. ..++...|+.++++|+.++|... +...++.+..
T Consensus 157 l~~~~d-mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~ 222 (230)
T PHA02537 157 LTTEWD-MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLER 222 (230)
T ss_pred HHhcCC-CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHH
Confidence 111111 133333 3445566552 44678899999999999998653 3344444433
No 374
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.79 E-value=50 Score=34.57 Aligned_cols=78 Identities=13% Similarity=-0.041 Sum_probs=51.6
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 68 VSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 68 i~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
.+.+.......|+++.- ....+..+...|+-+.|+..++.++...-. ...++.+|.++..+.+|..|-.++....
T Consensus 253 ~~~Ll~~~~~~p~ga~w--ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALW--LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHhHHHHHhCCCCccH--HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33334444455655544 446666777777777778888777772111 5667788888888888888888887777
Q ss_pred hcC
Q 013696 145 NLD 147 (438)
Q Consensus 145 ~l~ 147 (438)
.+.
T Consensus 331 des 333 (546)
T KOG3783|consen 331 DES 333 (546)
T ss_pred hhh
Confidence 654
No 375
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.60 E-value=54 Score=33.91 Aligned_cols=24 Identities=33% Similarity=0.691 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRS 110 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~a 110 (438)
|+.+|.....+|+++-|..||.++
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Confidence 556666666666666666665553
No 376
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.56 E-value=28 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 168 KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 168 ~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
.+|++.|..+++..|+......-...+..++.++-.+.
T Consensus 30 ~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk 67 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIK 67 (77)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777755444444455556666665554
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.41 E-value=1e+02 Score=30.43 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=66.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-------------------
Q 013696 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------------------- 147 (438)
Q Consensus 88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~------------------- 147 (438)
+.+-...++..+..+-|+.-..+++++|. +.+|..+|.-- .--..+|++.+.+|++-.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 35566677788888888889999999998 77777665321 122445666666665331
Q ss_pred ----CccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696 148 ----DRYIK--AYSRRATARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 148 ----p~~~~--a~~~lg~a~~~lg~~~eA~~~~~~al~l~P 182 (438)
..++. .-.++|.|-.++|+..+|+..++...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 12222 345789999999999999999999888777
No 378
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=66.08 E-value=34 Score=36.98 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=68.3
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHH-HHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELG-NECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g-~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA 136 (438)
.|.|++|...|-.+-. .+++ ..+.+.|+|-.-...|+..-.-+.+ ..++.++|..+..+..|++|
T Consensus 747 ~g~feeaek~yld~dr-----------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADR-----------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hcchhHhhhhhhccch-----------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777744311 1222 2456678888777777664443333 78899999999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
.++|...-.. -+...+++.+..|.+ ++...+--|++.+.+
T Consensus 816 ~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 816 AKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELL 855 (1189)
T ss_pred HHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchH
Confidence 9999887543 255666666666654 333344446665553
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.71 E-value=43 Score=36.11 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-------CC--------------------HHHHHHHHHHHHHhcCHHHH
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALS-------PT--------------------AVAYANRAMAYLKLRRFQEA 136 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-------p~--------------------~~~~~~la~~~~~l~~~~eA 136 (438)
+..|..-|..+...+..+.|.+++.++++.- +. ..+.+..+.+.+-++++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3445566777777777777777777776531 11 13455678888889999999
Q ss_pred HHHHHHHhhcC---C------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696 137 EDDCTEALNLD---D------RYIKAYSRRATARKELGKLKESIEDSEFAL 178 (438)
Q Consensus 137 ~~~~~~al~l~---p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al 178 (438)
......+.... | ..+..++..|..+...|+.+.|+..|.+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 98888777553 2 247789999999999999999999998433
No 380
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.49 E-value=50 Score=28.28 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 120 YANRAMAYL-KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 120 ~~~la~~~~-~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
|..+|.-++ ..|+-+.-.+.+.....-+..++..+..+|.+|.++|+..+|-+.+.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 455554443 344444444444444445556788888899999999999888888887754
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.06 E-value=16 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 165 GKLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 165 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
|+++.|...|++++...|.+..++..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566677777777777776666655543
No 382
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.35 E-value=98 Score=27.82 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=72.6
Q ss_pred cCCCccchHHHHHhhhcCCCCChhH---HHHHHHHHHHHHhccHHHHHHHHHHHhccC--CC-HHHHHHHHHHHHHhcCH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDA---TSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRF 133 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a---~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~l~~~ 133 (438)
..|+-..|+..|..+-...+ .|.. .+-..-+..++..|.|++-....+. |.-+ |- ..+.-.+|.+-++.|+|
T Consensus 106 ~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHHHhHHHHhccch
Confidence 66899999999998876543 2221 1233557788889999986655443 3333 33 66777899999999999
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696 134 QEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (438)
Q Consensus 134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~ 163 (438)
..|..+|..... |...+....+++.+...
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 999999999887 66667777777766543
No 383
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.36 E-value=21 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 169 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
.|++.|..++...|+.........++..++.++-.+.
T Consensus 33 ~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk 69 (77)
T smart00745 33 KAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIK 69 (77)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666654444444566666666665544
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.20 E-value=41 Score=31.31 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~ 151 (438)
..+.+.+...+||.....-++..|. ......+-..|.-.|+|+.|..-++-+-.+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455566666666666666666665 44444444455556666666666666666666553
No 385
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.17 E-value=14 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|..+-+.|+|++|+.+|..++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666777778888888888777665
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.08 E-value=24 Score=31.78 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 013696 100 FKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p 148 (438)
....++...+.+...|++..+.+++.++..+|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556667788888889999999999999999999999999999999999
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.42 E-value=46 Score=28.58 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (438)
Q Consensus 150 ~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k 200 (438)
.......++......|+|+-|......++..+|+|.++......+.+.+..
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999998888888776653
No 388
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.38 E-value=1.2e+02 Score=34.64 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC---------
Q 013696 78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------- 148 (438)
Q Consensus 78 ~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--------- 148 (438)
.|+... ....|.-+|..|.|+.|--+|.. ..-|..+|..+..+|+|..|....++|-...-
T Consensus 1191 gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1191 GPNVAN---IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred CCCchh---HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 455544 44789999999999999888864 34577888889999999999888887743310
Q ss_pred --c--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696 149 --R--------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 149 --~--------------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~ 185 (438)
. ++.-+-.+-.-|...|-|++-+..++.+|-+...+-
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 0 111122344456778888888888888887765443
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.04 E-value=26 Score=33.93 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~a 143 (438)
-.+..|...|.+.+|+.+.++++.++|- ...+..+-.++..+|+--.|+..|.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445677899999999999999999998 788888888999999977777776654
No 390
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.04 E-value=71 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|..+-+.|+|++|+.+|..+|+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566667777888888877766554
No 391
>PHA02593 62 clamp loader small subunit; Provisional
Probab=61.01 E-value=45 Score=29.96 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=47.1
Q ss_pred CHHHHHHHHh-hcCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHHhccCCchhHHH
Q 013696 331 DHALQARLLK-AISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVI 395 (438)
Q Consensus 331 ~~~~~~~yL~-~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~~~ 395 (438)
++...|.||. .|++...+.-....-+......+|..|...|.=+.+-+.++|+-|++-++++..+
T Consensus 94 ~dqmhydYll~sVrkgKRy~~WAKl~ed~e~~~~i~ll~~~Y~vn~~kA~eyl~iltk~~~l~~~l 159 (191)
T PHA02593 94 SDQAHFNYLLASVRKGKRYGKWAKLTEDSEEKLIIKLLAKAYSVNTDDAREYLDILKKKGKLPDVL 159 (191)
T ss_pred CHHHHHHHHHHhccCcccCchhhccCcchHHHHHHHHHHHHhCCCHHHHHHHHHHhccccchHHHH
Confidence 4667787765 5666666555555555555677888888888766677899999999999777543
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.53 E-value=18 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 121 ANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 121 ~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
+++|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788888899999999888888885
No 393
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.94 E-value=15 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|..+-+.|+|++|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566666777788888887777665
No 394
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.65 E-value=1.2e+02 Score=32.27 Aligned_cols=101 Identities=9% Similarity=-0.060 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKEL 164 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-p~~~~a~~~lg~a~~~l 164 (438)
|......-...|++....-.|.+|+--... ...|.+.+......|+..-|-..+.++.++. |.-+.....-+..-...
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 555556667789999999999999876665 7888888888888899999988888887765 56666777777777788
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHH
Q 013696 165 GKLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 165 g~~~eA~~~~~~al~l~P~~~~~ 187 (438)
|++..|...++++..-.|+..++
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhh
Confidence 99999999999999888887665
No 395
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.15 E-value=1e+02 Score=32.44 Aligned_cols=71 Identities=15% Similarity=0.018 Sum_probs=50.4
Q ss_pred CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC---C----ccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Q 013696 114 SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---D----RYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQ 183 (438)
Q Consensus 114 ~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~---p----~~~~a~~~lg~a~~~lg~-~~eA~~~~~~al~l~P~ 183 (438)
+++ ..-+..+|.++..+|+...|..+|..++.-. . -.|.|+|-+|..|..+|. ..+|..++.+|-....+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 555 3446667888888888888888887777321 1 136778888888888877 88888888888777644
Q ss_pred C
Q 013696 184 N 184 (438)
Q Consensus 184 ~ 184 (438)
+
T Consensus 524 Y 524 (546)
T KOG3783|consen 524 Y 524 (546)
T ss_pred c
Confidence 4
No 396
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.12 E-value=1.1e+02 Score=31.42 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcC--------------HHHHHHH
Q 013696 81 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRR--------------FQEAEDD 139 (438)
Q Consensus 81 ~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~--------------~~eA~~~ 139 (438)
.++.. ...+|..+|-.|+|+.|...|.-+.+-..+ +.++-..|.|++..+. ++.|...
T Consensus 206 S~E~q-~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 206 SPEAQ-MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred ChHHH-HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 34433 678999999999999999999998875432 4445556677776663 2334444
Q ss_pred HHHHh----hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 140 CTEAL----NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 140 ~~~al----~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
|.++- .....-..+....+.++...|.|.+|...+-+....
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 44421 111122345666677788888888877777666544
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.44 E-value=21 Score=20.97 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~ 159 (438)
|+++.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777777766553
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.30 E-value=83 Score=26.28 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHh--hcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696 100 FKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEAL--NLDDRYIKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~------~~~~~~la~~~~~l~~~~eA~~~~~~al--~l~p~~~~a~~~lg~a~~~lg~~~eA~ 171 (438)
-..-...+.+++....+ -.=|..+-..|...-+ .+...|.... .+.-..+.-|...|..+...|++++|.
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~ 119 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKAD 119 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344555566554322 1223333334444433 6666666665 466778889999999999999999999
Q ss_pred HHHHHHH
Q 013696 172 EDSEFAL 178 (438)
Q Consensus 172 ~~~~~al 178 (438)
+.|+.++
T Consensus 120 ~I~~~Gi 126 (126)
T PF08311_consen 120 EIYQLGI 126 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998875
No 399
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.11 E-value=32 Score=37.36 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=64.6
Q ss_pred CCCCCCcC-cCCCccchHHHHHhhhc------C----CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-------
Q 013696 52 KKPSPSGN-SYSRNYDPVSHISSSLM------N----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------- 113 (438)
Q Consensus 52 ~~~~~~~y-~~g~~~eAi~~~~~al~------~----~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~------- 113 (438)
+.+.|..| +..++++|+++|.+.-. + .|... ....-..|.-+...|+|+.|+.+|-.+--+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev-v~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV-VKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH-hhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 35566667 77888888888866422 1 11110 111235677778888888888777443211
Q ss_pred -----------------CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013696 114 -----------------SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174 (438)
Q Consensus 114 -----------------~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~ 174 (438)
+.. ...|-..+.-|...|+|+-|++.|.++-... .+ -..|.+.|+|..|...-
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~----da----i~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK----DA----IDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH----HH----HHHHhccccHHHHHHHH
Confidence 001 2234445666666777777777776653211 11 12345666666665554
Q ss_pred HHH
Q 013696 175 EFA 177 (438)
Q Consensus 175 ~~a 177 (438)
.++
T Consensus 815 ~e~ 817 (1636)
T KOG3616|consen 815 EEC 817 (1636)
T ss_pred HHh
Confidence 444
No 400
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.74 E-value=1.6e+02 Score=29.34 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=84.3
Q ss_pred cCCCccchHHHHHhhhcC-----CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMN-----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~-----~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~ 127 (438)
.+.+..+|...+..|-.. .|....+..-..-|..+....+|..|-.+|-+|++-+.. ...+-.+-.|-
T Consensus 180 ~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK 259 (411)
T KOG1463|consen 180 ALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK 259 (411)
T ss_pred HHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH
Confidence 666777777776655432 122233333345577777788999999999999986432 23344445666
Q ss_pred HHhcCHHH--HHHHHHHHhhcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Q 013696 128 LKLRRFQE--AEDDCTEALNLDDRYIKAYSRRATARKE--LGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 128 ~~l~~~~e--A~~~~~~al~l~p~~~~a~~~lg~a~~~--lg~~~eA~~~~~~al~l~P~ 183 (438)
..++..++ ++-.-..+++.+..+..|.-..|.++.+ +.+|+.|+..|..-|.-+|-
T Consensus 260 IMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 260 IMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 66776665 4555667778888888888888888764 67888888888888877663
No 401
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.34 E-value=29 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHhccHHHHHHHHHHHhccC
Q 013696 95 FKQKKFKEAIDCYSRSIALS 114 (438)
Q Consensus 95 ~~~g~y~~Ai~~y~~al~~~ 114 (438)
+..|+|+.|+....-+|+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeccCHHHHHHHHHHHHHcC
Confidence 56789999999999999876
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.79 E-value=28 Score=25.56 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=18.4
Q ss_pred HHHHcCCHHHHHHHHH-------HHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013696 160 ARKELGKLKESIEDSE-------FALRLEPQNQEIKKQLAEVKSLYEKEV 202 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~-------~al~l~P~~~~~~~~l~~a~~~~~ka~ 202 (438)
-.-..|+|++|+..|. .+++..++...-..-..++..++.++-
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE 63 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAE 63 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3334445444444444 444445433332223344444444443
No 403
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.53 E-value=94 Score=34.07 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=80.6
Q ss_pred cCCCccchHHHHHhhhcCCCC-ChhHHHHHHHHHHH---------HHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNEC---------FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK 129 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~-~~~a~~~~~~g~~~---------~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~ 129 (438)
.-|+-+.|+...-.+++.+.. .++. +..-|.+| -..+..+.|+++|+++++..|....-.|++..+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm--~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDM--YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCce--eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHH
Confidence 458888899888888875532 2333 22334333 33466788999999999999985555667766666
Q ss_pred hc-CHHHHHHHHHHHhhcCCc--------cHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696 130 LR-RFQEAEDDCTEALNLDDR--------YIKAYSRRAT---ARKELGKLKESIEDSEFALRLEPQNQEIK 188 (438)
Q Consensus 130 l~-~~~eA~~~~~~al~l~p~--------~~~a~~~lg~---a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 188 (438)
.| .|+...+.-.-+..++.- ...-|...|. +-.-..+|.+|++.-+..++|.|...-..
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLk 403 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLK 403 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHH
Confidence 66 455555544444444321 1122222222 22346799999999999999999875443
No 404
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.13 E-value=40 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 169 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
.|++.|..++...|+......-...+..++.++-.+.
T Consensus 31 ~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk 67 (75)
T cd02656 31 EALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLK 67 (75)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555553333333455555665554444
No 405
>PF13041 PPR_2: PPR repeat family
Probab=53.32 E-value=66 Score=21.54 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 115 p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
|+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 33455666666777777777777777777654
No 406
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.61 E-value=1.9e+02 Score=29.32 Aligned_cols=56 Identities=14% Similarity=0.031 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHHH--HHhcCHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAY--LKLRRFQEAEDDCTE 142 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~~--~~l~~~~eA~~~~~~ 142 (438)
....+..+++.++|..|...|..++...+. ...|..++.+| ...-+|++|.+.++.
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345666889999999999999999987642 34455555555 456689999999985
No 407
>PF12854 PPR_1: PPR repeat
Probab=52.18 E-value=33 Score=21.31 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 150 YIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 150 ~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
+...|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 567788899999999999999999875
No 408
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.64 E-value=59 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 169 eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
.|++.|..+++..|+......-..++.+++.++-.+.
T Consensus 31 ~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK 67 (75)
T cd02678 31 HALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLK 67 (75)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566644333333445555666554444
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.41 E-value=2.2e+02 Score=26.67 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMA 126 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~ 126 (438)
+.+...+|+...+.-++..|.+...+. .+-..|.-.|+|++|...++-+-.+.|+ +..|.++-.|
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~Rh--flfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRH--FLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchh--HHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 557788999999999999998888754 6667888899999999999999999987 5556655555
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.24 E-value=3.4e+02 Score=34.02 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred ccchHHHHHhhhc---CCCCC--hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHH
Q 013696 64 NYDPVSHISSSLM---NEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED 138 (438)
Q Consensus 64 ~~eAi~~~~~al~---~~p~~--~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~ 138 (438)
..+-|-.+++++- .+|+. ..+..|.+.|....+.|+++.|-.+.-.|.+.. -+.++..+|..+...|+...|+.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHH
Confidence 4455555555543 22221 234558889999999999999988888777765 37888899999999999999999
Q ss_pred HHHHHhhcC-Cc----------c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCH
Q 013696 139 DCTEALNLD-DR----------Y------IKAYSRRATARKELGKL--KESIEDSEFALRLEPQNQ 185 (438)
Q Consensus 139 ~~~~al~l~-p~----------~------~~a~~~lg~a~~~lg~~--~eA~~~~~~al~l~P~~~ 185 (438)
.++..+.++ |+ . .++.+..+.-....|++ ..-+.+|..+.++.|...
T Consensus 1724 ~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1724 VLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 999999654 22 1 12344444545555664 356677888999998443
No 411
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=49.46 E-value=5.5 Score=42.23 Aligned_cols=96 Identities=17% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh--ccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHH--HhhcCCc-cHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSI--ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTE--ALNLDDR-YIKAYSRRAT 159 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al--~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~--al~l~p~-~~~a~~~lg~ 159 (438)
+..-+..++..|++..|...+...- .+.+. .......|.+.+..|++..|+..+.. ...+.+. ....+..+|.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 4556677888888888888877655 23444 45556667788888888888887764 1112121 2334555677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 013696 160 ARKELGKLKESIEDSEFALRLEP 182 (438)
Q Consensus 160 a~~~lg~~~eA~~~~~~al~l~P 182 (438)
++...|++-+|...+-..-.+-+
T Consensus 107 a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhhcC
Confidence 88888887777776555544444
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.51 E-value=2e+02 Score=31.29 Aligned_cols=91 Identities=11% Similarity=-0.091 Sum_probs=55.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~ 168 (438)
.+|......+.-.+|...+..+.....+....-.+...-+..++++.+..++...-.-.......+|-+|.++..+|+.+
T Consensus 284 ~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~ 363 (644)
T PRK11619 284 IVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKA 363 (644)
T ss_pred HHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHH
Confidence 34433333332456666666654433232333333334447788887777666643323345677888898888899999
Q ss_pred HHHHHHHHHHh
Q 013696 169 ESIEDSEFALR 179 (438)
Q Consensus 169 eA~~~~~~al~ 179 (438)
+|...|+++..
T Consensus 364 ~A~~~~~~~a~ 374 (644)
T PRK11619 364 EAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHhc
Confidence 99999988743
No 413
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.11 E-value=1.7e+02 Score=28.98 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHHHH
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKESI 171 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~--~~a~~~lg~a~~~lg~~~eA~ 171 (438)
.+-..+|+|-.++|+..+|++.++...+-.|-. ...+-++-.++..+.-|.+..
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344668999999999999999999988777732 234555666666655444333
No 414
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.99 E-value=47 Score=36.28 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=78.3
Q ss_pred cCCCccchHHHHHhhhcCCCCCh--hHHHHHHHHHHHHH--hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFK--QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~--~a~~~~~~g~~~~~--~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~ 134 (438)
..+++.+|...|..++.+-|... .+....+.+.+++. .|+|..++.-..-++...|. ..++..++.||..++.++
T Consensus 65 ~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d 144 (748)
T KOG4151|consen 65 QKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLD 144 (748)
T ss_pred hhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHH
Confidence 55678888778888888777432 22224455555544 67999999999999999999 888888999999999999
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696 135 EAEDDCTEALNLDDRYIKAYSRRATAR 161 (438)
Q Consensus 135 eA~~~~~~al~l~p~~~~a~~~lg~a~ 161 (438)
-|+++..-....+|.++.+--.....+
T Consensus 145 ~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 145 LAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 999998888899999966655444333
No 415
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.78 E-value=3e+02 Score=27.48 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhc------------------------CCccH-----------HHHHHHHHHHHH
Q 013696 119 AYANRAMAYLKLRRFQEAEDDCTEALNL------------------------DDRYI-----------KAYSRRATARKE 163 (438)
Q Consensus 119 ~~~~la~~~~~l~~~~eA~~~~~~al~l------------------------~p~~~-----------~a~~~lg~a~~~ 163 (438)
+.+.+|.-|+..++++.|.--+.++... +|+.- ..|.++...|..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea 206 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEA 206 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777777776666665522 23221 125556666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 013696 164 LGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 164 lg~~~eA~~~~~~al~l~P~~ 184 (438)
-.++-.+...|..+|-..|++
T Consensus 207 ~~~l~npYv~Yl~~lf~a~n~ 227 (449)
T COG3014 207 YQGLLNPYVSYLSGLFYALNG 227 (449)
T ss_pred hcccchHHHHHHHHHhcccCc
Confidence 677777888888888777766
No 416
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=47.53 E-value=31 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|..+-..|+|++|+.+|..+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666667777777777766554
No 417
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.42 E-value=30 Score=26.17 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|...-..|+|++|+.+|..+|+
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555566777777777666554
No 418
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=47.24 E-value=1.1e+02 Score=25.81 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhcc-C----CHHHHHHHHhh-cCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHHhccCC
Q 013696 316 KSAYEFEVSWRGFA-G----DHALQARLLKA-ISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVP 389 (438)
Q Consensus 316 ~~~~ef~~~w~~~~-~----~~~~~~~yL~~-i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~ 389 (438)
..-..|...|+.+- . ++..+..||+. +.++..-.|=+-.++++-.-..+..|...|+.....+-.++..|-..+
T Consensus 6 ~~~~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~ 85 (145)
T PF03564_consen 6 SEWPEFIDQFDSLVHENPDLSDIEKLNYLRSCLKGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLP 85 (145)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhccc
Confidence 34457888887742 1 46677887776 566655555555788899999999999999976567788888888888
Q ss_pred ch
Q 013696 390 RF 391 (438)
Q Consensus 390 RF 391 (438)
.|
T Consensus 86 ~~ 87 (145)
T PF03564_consen 86 PI 87 (145)
T ss_pred cc
Confidence 74
No 419
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.81 E-value=1.1e+02 Score=22.16 Aligned_cols=51 Identities=22% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHH
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDD 139 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~ 139 (438)
..|..++..|+|=+|-+.++......+. ..+...-|..+.+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5678888999999999999988876553 22333344555666777766553
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=1.3e+02 Score=33.74 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHhhcCCccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q 013696 142 EALNLDDRYIKAYSRRA-TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213 (438)
Q Consensus 142 ~al~l~p~~~~a~~~lg-~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~~~~~~~~~ 213 (438)
.-..+.|-+.-.-.+.| .++++++++..|-....+.|++.|..+.+. ..+....+-+.++....+-.
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~-----q~rki~~a~eknp~Da~~l~ 1141 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE-----QARKIKQAAEKNPTDAYELN 1141 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH-----HHHHHHHHhhcCcccccccC
Confidence 33455665544333433 567889999999999999999999876652 12222334555666555433
No 421
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.13 E-value=1.1e+02 Score=31.33 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccC----CC--------HHHHHHHHHHHHHhcCH----------HHHHHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALS----PT--------AVAYANRAMAYLKLRRF----------QEAEDDCTE 142 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~----p~--------~~~~~~la~~~~~l~~~----------~eA~~~~~~ 142 (438)
..++..|.++++.+.|.+|+.++-.|=+.+ +. +..-..+-.||+.+++. ..|.+.|.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 346788889999999999998875554432 22 33333456788888753 223333333
Q ss_pred Hh--------hc-CCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 143 AL--------NL-DDRYI------KAYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 143 al--------~l-~p~~~------~a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
+. .+ .+..+ ..+..-|.+.+..|+-++|.++++.+...
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 32 11 12222 23445688999999999999999988643
No 422
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.50 E-value=84 Score=30.29 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=89.4
Q ss_pred ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHH------HHhcCHHHH
Q 013696 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY------LKLRRFQEA 136 (438)
Q Consensus 64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~------~~l~~~~eA 136 (438)
.+.-+.....++..+|.+...+.+...-...+-..+|..-+....+.+..|+. --.|..+-.|. ..-..+...
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45556778888999999888855544444445446677778888899999987 43333333333 333455666
Q ss_pred HHHHHHHhhcCCccHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRR---ATARKELGK------LKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~l---g~a~~~lg~------~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 195 (438)
.++-..+|.-|+.|..||..+ -......|+ +.+-+++.-.++-.+|++..+++-+.-..
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 888888999999999998887 333344554 45556677777788898888766554433
No 423
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.32 E-value=36 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|...-..|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666667777777777766554
No 424
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.14 E-value=85 Score=23.85 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhc
Q 013696 191 LAEVKSLYEKEVFQK 205 (438)
Q Consensus 191 l~~a~~~~~ka~~~~ 205 (438)
..++.+++.++-.++
T Consensus 54 r~K~~eYl~RAE~Lk 68 (76)
T cd02681 54 QEKSNEYLDRAQALH 68 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666655544
No 425
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.70 E-value=1e+02 Score=23.18 Aligned_cols=36 Identities=17% Similarity=0.037 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205 (438)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~ 205 (438)
|++.|..+++..++...-..-..++..++.++-.++
T Consensus 32 ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK 67 (75)
T cd02684 32 ALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELK 67 (75)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445445433222233345555555554444
No 426
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.52 E-value=36 Score=19.72 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=6.2
Q ss_pred HHHHhcCHHHHHHHHH
Q 013696 126 AYLKLRRFQEAEDDCT 141 (438)
Q Consensus 126 ~~~~l~~~~eA~~~~~ 141 (438)
+|.+.|++++|...+.
T Consensus 9 ~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 9 GYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHccchHHHHHHHHH
Confidence 3333333333333333
No 427
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.68 E-value=45 Score=25.32 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=11.8
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 013696 163 ELGKLKESIEDSEFALRL 180 (438)
Q Consensus 163 ~lg~~~eA~~~~~~al~l 180 (438)
..|+|++|+..|..++++
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 566677777777666654
No 428
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.91 E-value=63 Score=26.98 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCCH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPTA 117 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~ 117 (438)
...+|..+...|++++|+.+|-+||...|++
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4578999999999999999999999999983
No 429
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.46 E-value=93 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
+..+|...++.+++-.|+-+|++|+.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 346778888888888888888888765
No 430
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.39 E-value=91 Score=38.49 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=27.8
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~ 175 (438)
+...|+|..|..+|+++++.+|+..+.+.+.-......|.+...+-..+
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhc
Confidence 3445566666666666666666655555555555555555555554333
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.32 E-value=4.6e+02 Score=28.08 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=11.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 013696 161 RKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 161 ~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
+...|.+.-|.+++.-.+.++|.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCc
Confidence 33444555555555555555554
No 432
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=41.83 E-value=65 Score=19.34 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696 137 EDDCTEALNLDDRYIKAYSRRATARKE 163 (438)
Q Consensus 137 ~~~~~~al~l~p~~~~a~~~lg~a~~~ 163 (438)
+.....++..+|.+..+|..+-.+...
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 456667777777777777666655544
No 433
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.50 E-value=45 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+...|...-..|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455556666778888777766554
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.47 E-value=1.2e+02 Score=22.91 Aligned_cols=33 Identities=0% Similarity=-0.109 Sum_probs=13.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhh
Q 013696 172 EDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204 (438)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~ 204 (438)
+.|..+++..++...-..-..++.+.+.+|-.+
T Consensus 34 ~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i 66 (75)
T cd02677 34 DLLLKGVQGDSSPERREAVKRKIAEYLKRAEEI 66 (75)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443322223334444555555443
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.46 E-value=2.1e+02 Score=30.70 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
.-|..+|.+.+..+++..|.+++.+|..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3345555555555555555555555543
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.99 E-value=1.4e+02 Score=28.70 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=43.9
Q ss_pred cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
...+.++|+..|.+++.+.+...+ ..+++..-.++|+.++|++-++.|.+.+-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345789999999999999876543 334778888999999999999999988764
No 437
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.02 E-value=1.1e+02 Score=31.72 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~a 143 (438)
...|-.+|...+..|+++-|+.+|.++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 445555555555555555555555554
No 438
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.69 E-value=84 Score=26.24 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
..+|..+...|++++|..+|-+|+...|.-.+.+.-|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45788888899999999999999999997665544443
No 439
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.65 E-value=46 Score=25.27 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
..|..--..|+|++|+.+|..+++.
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3444444566777777777776664
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.32 E-value=2.7e+02 Score=28.06 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=32.5
Q ss_pred CcCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 59 NSYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 59 y~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
|..++|..|...+......-|.... .......|..++..-+|.+|.++++..+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3667777777777777663222222 222233455556667777777777776654
No 441
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.30 E-value=65 Score=19.46 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013696 133 FQEAEDDCTEA 143 (438)
Q Consensus 133 ~~eA~~~~~~a 143 (438)
..+|..+++++
T Consensus 21 ~~~A~~~~~~A 31 (36)
T smart00671 21 LEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.10 E-value=54 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
+...|...-..|+|++|+.+|..+|+.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334455555567777777777766653
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.66 E-value=3.9e+02 Score=26.11 Aligned_cols=63 Identities=5% Similarity=0.125 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----H---HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----A---VAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~---~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
+.++.++|..|.+.++-+.+.+...+.++-.-. . ..-..+|..|..+.-.++.++...-.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 333555555555555555555554444432211 1 11233444444444444444444444443
No 444
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.15 E-value=72 Score=18.72 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=8.0
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 013696 125 MAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 125 ~~~~~l~~~~eA~~~~~~a 143 (438)
.+|.+.|++++|...|...
T Consensus 8 ~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444433
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.89 E-value=4.4e+02 Score=27.12 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC---------HHH--------HHHHHHHHHH-hcC-----HHHHHHHHHHH
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVA--------YANRAMAYLK-LRR-----FQEAEDDCTEA 143 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---------~~~--------~~~la~~~~~-l~~-----~~eA~~~~~~a 143 (438)
....|..++..|++.+|+..|+..|..-|- ..+ -|-+|+.... .+. .++....++-|
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 345788999999999999999998875322 122 1223322211 111 11221222222
Q ss_pred -----hhcCCccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 144 -----LNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 144 -----l~l~p~~~~a~~~lg~a-~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
.++.|.+...-.+.|.. .++.++|..|-...++.|++.|....+ .+|++.+.
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a----~qArKil~ 344 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA----EQARKILQ 344 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH----HHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH----HHHHHHHH
Confidence 23334443333444433 357899999999999999999976543 34555444
No 446
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=36.08 E-value=1.6e+02 Score=24.76 Aligned_cols=67 Identities=16% Similarity=0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---------------cHHHHHHHHHHHHHcCCHHHHHHHHH----HHHhh
Q 013696 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDR---------------YIKAYSRRATARKELGKLKESIEDSE----FALRL 180 (438)
Q Consensus 120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~---------------~~~a~~~lg~a~~~lg~~~eA~~~~~----~al~l 180 (438)
+.++|...++.+++-.++-+|++|+.+..+ .+-...++|.-+..+|+.+-.+.+++ +++.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999865321 13457899999999999998888875 56677
Q ss_pred CCCCHH
Q 013696 181 EPQNQE 186 (438)
Q Consensus 181 ~P~~~~ 186 (438)
-|..+.
T Consensus 84 iPQCp~ 89 (140)
T PF10952_consen 84 IPQCPN 89 (140)
T ss_pred ccCCCC
Confidence 776654
No 447
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=35.86 E-value=51 Score=25.28 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=11.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhc
Q 013696 89 ELGNECFKQKKFKEAIDCYSRSIA 112 (438)
Q Consensus 89 ~~g~~~~~~g~y~~Ai~~y~~al~ 112 (438)
+.|..+-..|+.++|+.+|++++.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHH
Confidence 333333334455555555555544
No 448
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=35.78 E-value=81 Score=19.48 Aligned_cols=8 Identities=13% Similarity=-0.180 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013696 135 EAEDDCTE 142 (438)
Q Consensus 135 eA~~~~~~ 142 (438)
+|+.+|++
T Consensus 26 ~A~~~~~~ 33 (39)
T PF08238_consen 26 KAFKWYEK 33 (39)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 33333333
No 449
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=2.6e+02 Score=24.48 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=34.2
Q ss_pred CHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHH
Q 013696 317 SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVV 367 (438)
Q Consensus 317 ~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l 367 (438)
-|.+.-..+++| ++|-.|++||..+-+..-+.=--+. +|.+|.+|+..=
T Consensus 57 qSa~lnkAY~TL-k~pL~RA~Yilkl~g~e~~sne~st-Dpe~Lmevle~~ 105 (168)
T KOG3192|consen 57 QSAELNKAYDTL-KDPLARARYLLKLKGQEQTSNELST-DPEFLMEVLEYH 105 (168)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHhCCCCchhhhcc-CHHHHHHHHHHH
Confidence 355777888888 4577899999887664444333233 889998888754
No 450
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.01 E-value=5.1e+02 Score=27.84 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=49.0
Q ss_pred hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696 97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175 (438)
Q Consensus 97 ~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~ 175 (438)
+...+.|....+.-+--... +...+..|..+-..+..+.|-.+|++.+..+|+ .+++..|.-+.+.|-...|...+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444444443333222222 455566677777777777777778777777776 566666666677776666666555
Q ss_pred HHHhhCCC
Q 013696 176 FALRLEPQ 183 (438)
Q Consensus 176 ~al~l~P~ 183 (438)
++.|+
T Consensus 99 ---~~~~~ 103 (578)
T PRK15490 99 ---KVSNG 103 (578)
T ss_pred ---HhCcc
Confidence 44444
No 451
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=34.48 E-value=2.7e+02 Score=23.08 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHH---------HhccCCCHHHHHHHHHHHHHh
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR---------SIALSPTAVAYANRAMAYLKL 130 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~---------al~~~p~~~~~~~la~~~~~l 130 (438)
..+.....+.+++.++..++.++.. +..+...|.+. +-...+..+.. ++.+......|-....+|.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~--~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPAL--QTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhH--HHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Q ss_pred cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (438)
Q Consensus 131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a 194 (438)
|++.+|+..+-. .+++++.|++++.+ +.+++.|..+...
T Consensus 96 ~~~~~Al~~~l~--------------------~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 96 GNFKDAIVTLIE--------------------HLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred cCHHHHHHHHHH--------------------cccCHHHHHHHHHh-----CCCHHHHHHHHHH
No 452
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=33.87 E-value=6.1e+02 Score=27.04 Aligned_cols=89 Identities=13% Similarity=-0.028 Sum_probs=53.0
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH-HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696 92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA-MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la-~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e 169 (438)
+.-.+..-...|...|.+|-+..-. ..+|..-| +=|...++..-|...|+-.++..++.+..-+....-+..+++-..
T Consensus 374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N 453 (656)
T KOG1914|consen 374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNN 453 (656)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchh
Confidence 3333334445555555555443222 12222222 345566777777777777777777777666666666677777777
Q ss_pred HHHHHHHHHhh
Q 013696 170 SIEDSEFALRL 180 (438)
Q Consensus 170 A~~~~~~al~l 180 (438)
|...|++++.-
T Consensus 454 ~R~LFEr~l~s 464 (656)
T KOG1914|consen 454 ARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHhc
Confidence 77777777765
No 453
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=33.82 E-value=5.7e+02 Score=26.67 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=57.9
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696 70 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 70 ~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l 146 (438)
.++.-++.+|++... |+.+-..|-.+|.+++-.+.|.+...-.|- +.+|...-..-+..++|...+..|.+++.-
T Consensus 30 rLRerIkdNPtnI~S--~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILS--YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHH--HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 667778888888777 779999999999999999999999888887 555544333334457788888888888753
No 454
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=32.76 E-value=30 Score=26.82 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccCCchhHHHh
Q 013696 320 EFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIM 396 (438)
Q Consensus 320 ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~--~~~~~~~L~~l~~~~RF~~~~~ 396 (438)
..+++|+.+...-. ++...+-.| +..-+.++.......|..+...+ -.-+-..+..|.+++|.|++-+
T Consensus 13 ~LG~dW~~LA~eLg--------~s~~dI~~i-~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 13 HLGLSWTELARELN--------FSVDEINQI-RVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred HhhccHHHHHHHcC--------CCHHHHHHH-HHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 46788888753211 222333333 55556677778888887766533 2345678899999999997654
No 455
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=32.71 E-value=3.8e+02 Score=24.37 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=44.4
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh-----c--cHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----K--KFKEAIDCYSRSIALSPTAVAYANRAMAYL 128 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~-----g--~y~~Ai~~y~~al~~~p~~~~~~~la~~~~ 128 (438)
..++...|+..|..+-.. +.+.+ ...+|..++.- + +...|..+++++..+.- ..+.+++...|+
T Consensus 85 ~~~~l~~a~r~~~~aC~~--n~~~a--C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~-~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDA--NIPQA--CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED-GEACFLLSTMYM 155 (248)
T ss_pred CccCHHHHHHHHHHHhcc--CCHHH--HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC-chHHHHHHHHHh
Confidence 446788899999888764 45666 55778877652 2 37899999999987754 444455555554
No 456
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.43 E-value=2.2e+02 Score=22.95 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (438)
Q Consensus 118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~ 166 (438)
......|..-+..|+|..|.+...++-+..+...-.|..-+.+-..+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3344556777777888888888888766655555555555555555543
No 457
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.38 E-value=3.1e+02 Score=27.37 Aligned_cols=28 Identities=11% Similarity=-0.149 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696 153 AYSRRATARKELGKLKESIEDSEFALRL 180 (438)
Q Consensus 153 a~~~lg~a~~~lg~~~eA~~~~~~al~l 180 (438)
..+.+|.-|....+++.|.--|+++..-
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3456777788888888888888877643
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.33 E-value=82 Score=24.15 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhC
Q 013696 167 LKESIEDSEFALRLE 181 (438)
Q Consensus 167 ~~eA~~~~~~al~l~ 181 (438)
|+.|.+...++|+.+
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 344444444444443
No 459
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=31.84 E-value=3.7e+02 Score=23.93 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=78.7
Q ss_pred CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHH
Q 013696 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~ 137 (438)
.++-+-|+..++..+.....-..-.+..++-..-...|.|.+|-....+.++.... ..+|..++.|.+...+-..-+
T Consensus 70 ~~N~eLa~~tLEnLvt~snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i 149 (220)
T PF10858_consen 70 KNNSELAFNTLENLVTNSNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNI 149 (220)
T ss_pred cCcHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccCh
Confidence 35566677777776665433333333445556667889999999999999987654 778999999988776433223
Q ss_pred HHHHHHh---hc-C----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696 138 DDCTEAL---NL-D----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (438)
Q Consensus 138 ~~~~~al---~l-~----p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~ 183 (438)
++-++.+ .. + |-.+.|-...|..-.+.|.-.+|+..++.++.-+-.
T Consensus 150 ~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~Snn~ 203 (220)
T PF10858_consen 150 QDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLASNNV 203 (220)
T ss_pred hhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcch
Confidence 3222222 11 1 222333334444455778889999999988876543
No 460
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=2.9e+02 Score=27.57 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=86.9
Q ss_pred cCCCccchHHHHHhhhc----CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc------CCC--HHHHHHHHHHH
Q 013696 60 SYSRNYDPVSHISSSLM----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAY 127 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~----~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~------~p~--~~~~~~la~~~ 127 (438)
+.++|.+|+......+. ++....-...+......|+...+...|-..+..|--. -|. +..-..-|..+
T Consensus 140 d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlh 219 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILH 219 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcccee
Confidence 78889999988776654 3322222222456777888888888877776655332 133 33334446677
Q ss_pred HHhcCHHHHHHHHHHHhhcCC---ccHHHHHH---HHHHHHHcCCHHHHHHH--HHHHHhhCCCCHHH------------
Q 013696 128 LKLRRFQEAEDDCTEALNLDD---RYIKAYSR---RATARKELGKLKESIED--SEFALRLEPQNQEI------------ 187 (438)
Q Consensus 128 ~~l~~~~eA~~~~~~al~l~p---~~~~a~~~---lg~a~~~lg~~~eA~~~--~~~al~l~P~~~~~------------ 187 (438)
..-.+|..|..+|-.|++-.. ++++|... +-.|-..++..++--.. -..+++....+-++
T Consensus 220 a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS 299 (411)
T KOG1463|consen 220 AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS 299 (411)
T ss_pred ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc
Confidence 777899999999999986432 23455333 23334455665544333 33455555444444
Q ss_pred HHHHHHHHHHHHHHHhhch
Q 013696 188 KKQLAEVKSLYEKEVFQKA 206 (438)
Q Consensus 188 ~~~l~~a~~~~~ka~~~~~ 206 (438)
+..+..|+..|...+..++
T Consensus 300 LkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 300 LKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHhHHHHhcCh
Confidence 4556666666666555443
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.70 E-value=3.5e+02 Score=25.64 Aligned_cols=98 Identities=8% Similarity=-0.131 Sum_probs=0.0
Q ss_pred cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhcC-
Q 013696 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRR- 132 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~~~~l~~- 132 (438)
.+++|++|++. ++.=+..+.+.|++.-|.+.-.-.++.... .....+++.++.....
T Consensus 2 ~~kky~eAidL----------------L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDL----------------LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHH----------------HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHH----------------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred -------HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013696 133 -------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174 (438)
Q Consensus 133 -------~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~ 174 (438)
...|+.+. +.-...-.++..+..+|..+.+-|++.+|..+|
T Consensus 66 ~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 66 EPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.58 E-value=1.1e+02 Score=18.01 Aligned_cols=20 Identities=20% Similarity=-0.119 Sum_probs=8.4
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 013696 123 RAMAYLKLRRFQEAEDDCTE 142 (438)
Q Consensus 123 la~~~~~l~~~~eA~~~~~~ 142 (438)
+-.++.+.|+++.|...+..
T Consensus 7 ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444433
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=3.8e+02 Score=30.25 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~ 116 (438)
-.+.|..+...|++.+|+++|+.+|-.-|-
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l 1023 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPL 1023 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeE
Confidence 346778888889999999999888765543
No 464
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.99 E-value=3.5e+02 Score=26.90 Aligned_cols=75 Identities=20% Similarity=0.101 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhccCC------C-HHHHHHH-HHHHHH-------hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 101 KEAIDCYSRSIALSP------T-AVAYANR-AMAYLK-------LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 101 ~~Ai~~y~~al~~~p------~-~~~~~~l-a~~~~~-------l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
.+.+..|...+...+ . ..-+..+ +.+++. .+..-+|+-.++.++..+|.|......+..+|..+|
T Consensus 152 ~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG 231 (365)
T PF09797_consen 152 QELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG 231 (365)
T ss_pred HHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Confidence 344556666666542 1 2333333 334433 335667888889999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 013696 166 KLKESIEDSE 175 (438)
Q Consensus 166 ~~~eA~~~~~ 175 (438)
-...|...|.
T Consensus 232 ~~~~A~~~~~ 241 (365)
T PF09797_consen 232 AGSLALEHYE 241 (365)
T ss_pred CHHHHHHHHH
Confidence 9999988775
No 465
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.22 E-value=37 Score=25.45 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhccccHHH-HHHHHHHhccCCchhHHHhhcC
Q 013696 359 ILIDIVKVVATFFTGEVDL-AIKYLEYLTMVPRFDLVIMCLS 399 (438)
Q Consensus 359 ~l~~il~~l~~~~~~~~~~-~~~~L~~l~~~~RF~~~~~~ls 399 (438)
-+.++|..|+..+.+||++ .+++|+.|++-.-|+=.+.=|+
T Consensus 5 rlnevlellqp~w~k~~dlnl~q~lqkla~eagf~~~l~dlt 46 (88)
T COG3084 5 RLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLT 46 (88)
T ss_pred HHHHHHHHhhHHhccCCCccHHHHHHHHHHHhcccccHHHcc
Confidence 3678888898889999888 8999999999998875544333
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=29.96 E-value=5.6e+02 Score=27.19 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696 98 KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (438)
Q Consensus 98 g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a 177 (438)
.++.--...+++.+.+..+-.+|+.++.||... ..+.-....++.++.+-+++..-..++..|.. ++-..+..+|.++
T Consensus 80 ~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 334444445566666666666777777777666 34445555666666666665555555555554 6666666666665
Q ss_pred H
Q 013696 178 L 178 (438)
Q Consensus 178 l 178 (438)
+
T Consensus 158 ~ 158 (711)
T COG1747 158 L 158 (711)
T ss_pred H
Confidence 5
No 467
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.48 E-value=3.4e+02 Score=23.96 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHH
Q 013696 166 KLKESIEDSEFALRLEPQNQEI 187 (438)
Q Consensus 166 ~~~eA~~~~~~al~l~P~~~~~ 187 (438)
..++....+...+.|+|....+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHH
Confidence 4455555666666666644333
No 468
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.24 E-value=1.4e+02 Score=28.76 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=40.8
Q ss_pred hccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696 97 QKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (438)
Q Consensus 97 ~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~ 145 (438)
..+.++|+..|.+.+++.+. -.++-.+--+++++++|++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45789999999999999986 45566677889999999999888888774
No 469
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=29.04 E-value=2.1e+02 Score=28.39 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=60.0
Q ss_pred HHHhccC-CHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhccc------------cHHHH-------HHHHH
Q 013696 324 SWRGFAG-DHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTG------------EVDLA-------IKYLE 383 (438)
Q Consensus 324 ~w~~~~~-~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~------------~~~~~-------~~~L~ 383 (438)
.|..+.. ++.....||+..+|..+.-+++. +++++-..|+..|...... +|..+ -..|.
T Consensus 113 ~fe~L~~ld~~~l~~lL~~EhpqtiA~iLs~-l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~ 191 (339)
T PRK05686 113 GFDFLRKMDPQQLANFIRNEHPQTIALILSY-LKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLS 191 (339)
T ss_pred hHHHHhcCCHHHHHHHHHhcCHHHHHHHHhC-CCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 7777664 78888899999999888888854 5666666666655322211 12211 22222
Q ss_pred H-----hccCCchhHHHhhcChhhHHHHHHHHHHhhcC
Q 013696 384 Y-----LTMVPRFDLVIMCLSLADKADLRKVWDETFCN 416 (438)
Q Consensus 384 ~-----l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~~~ 416 (438)
. -..++.-..++..|+..++..-..+++.|...
T Consensus 192 ~~~~~~~~~~~g~~~~a~Iln~~~~~~~~~il~~L~~~ 229 (339)
T PRK05686 192 SMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEEE 229 (339)
T ss_pred hcccccccccCcHHHHHHHHhcCCchHHHHHHHHHHhh
Confidence 2 13455667788888888888888888888753
No 470
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=28.59 E-value=50 Score=25.94 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHHhccCCchhHHHhhcCh
Q 013696 321 FEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSL 400 (438)
Q Consensus 321 f~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~~~~~ls~ 400 (438)
-.+.|+.+ +++.....|..++++.-..|+.. |++..+..|+..+. ++-+..+|..|....|= -++..|++
T Consensus 18 ~~~~~~~l--~~~~~a~vl~~l~~~~~~~il~~-l~~~~~a~il~~m~------~dd~~~ll~~L~~~~~~-~il~~l~~ 87 (102)
T PF03448_consen 18 RAQLFRLL--PPEKAAEVLEELDPDTQAEILEA-LSPEEAAEILAEMD------SDDAADLLEELPEEQRE-KILAALDE 87 (102)
T ss_dssp HHHHHHHS---HHHHHHHHCTS-CCCCCHCCCC-S-HHHHHHHHCCS-------HHHHHHHHCCSHHHHHH-HHHHCS-H
T ss_pred HHHHHHhC--CHHHHHHHHHcCCHHHHHHHHHh-CCHHHHHHHHHccC------hHHHHHHHHHCCHHHHH-HHHHcCCH
Confidence 33444444 34445555555555555555433 44444444433221 24455556555555443 34566677
Q ss_pred hhHHHHHHHH
Q 013696 401 ADKADLRKVW 410 (438)
Q Consensus 401 ~ek~~~~~l~ 410 (438)
.++..|++++
T Consensus 88 ~~~~~i~~ll 97 (102)
T PF03448_consen 88 EEREEIKQLL 97 (102)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 471
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=28.36 E-value=61 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.102 Sum_probs=28.4
Q ss_pred hcChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhhcc
Q 013696 397 CLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCL 436 (438)
Q Consensus 397 ~ls~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~y~~ 436 (438)
=+|..+|+.++.++.+|.... -++.+.|.++|--
T Consensus 54 KCt~kQK~~~~kv~~~l~~~~------P~~w~~l~~KyDp 87 (95)
T PF03392_consen 54 KCTPKQKENARKVIKFLKKNY------PDEWEELVKKYDP 87 (95)
T ss_dssp TS-HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHCC
Confidence 389999999999999999765 5779999999953
No 472
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.20 E-value=73 Score=32.19 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (438)
Q Consensus 133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~ 167 (438)
...|+.++++|.. .+.|..|..+|.++..+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4556777777765 56788999999999988874
No 473
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.03 E-value=96 Score=30.98 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHHhcCHHHHH
Q 013696 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAE 137 (438)
Q Consensus 85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---------~~~~~~la~~~~~l~~~~eA~ 137 (438)
..+...|+-.+.+++|+.|...|..|..+... ..+++..|.+++.+++++.++
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33668899999999999999999998876422 345555566665555555443
No 474
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=27.63 E-value=4.7e+02 Score=28.19 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (438)
Q Consensus 127 ~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~ 184 (438)
++...+|.-|+..|.++- -+...+|...|.+..+.++|..|..-|.+++++...+
T Consensus 566 Lie~ErYqlaV~mckKc~---iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKCG---IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred HHHHHHHHHHHHHHhhcC---CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 344556777777766652 3456788889999999999999999999999887443
No 475
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=26.81 E-value=2.9e+02 Score=32.03 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.4
Q ss_pred HHHHHhccHHHHHHHHH
Q 013696 92 NECFKQKKFKEAIDCYS 108 (438)
Q Consensus 92 ~~~~~~g~y~~Ai~~y~ 108 (438)
..|...|+.++|+++|.
T Consensus 960 l~Ye~~GklekAl~a~~ 976 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKAYK 976 (1265)
T ss_pred HHHHHhccHHHHHHHHH
Confidence 33444444444444443
No 476
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.63 E-value=3.3e+02 Score=29.30 Aligned_cols=47 Identities=26% Similarity=0.097 Sum_probs=25.7
Q ss_pred HHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (438)
Q Consensus 128 ~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~ 179 (438)
+++|+++.|.+...+ .++..-|-.+|.+....|++..|.++|.++..
T Consensus 648 l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 455565555443332 23445556666666666666666666666543
No 477
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.27 E-value=8.1e+02 Score=26.05 Aligned_cols=107 Identities=17% Similarity=0.054 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-------------------
Q 013696 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL------------------- 146 (438)
Q Consensus 87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l------------------- 146 (438)
++.++.+|... .-++-...+++..+.+=+ ...-..++..|.+ .+-..+..+|.+|+..
T Consensus 102 l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~ 179 (711)
T COG1747 102 LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE 179 (711)
T ss_pred HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 67888888877 445566777777777655 5555556666655 6666677777776632
Q ss_pred -CCccHHHHHH------------HH--------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696 147 -DDRYIKAYSR------------RA--------TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (438)
Q Consensus 147 -~p~~~~a~~~------------lg--------~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~ 195 (438)
-+++..-+++ +| .-|....+|++|+..+.-.|+++..+..+..++-+-+
T Consensus 180 ~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 180 LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 1333322221 11 2244567899999999999999998888865554433
No 478
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=25.69 E-value=1.1e+02 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.0
Q ss_pred CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHH
Q 013696 78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA 121 (438)
Q Consensus 78 ~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~ 121 (438)
+|....|..++..|...-+.|..-+||..|+.|+++-|+ ...|.
T Consensus 13 d~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 13 DPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred chHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 344455666788888888999999999999999999999 44443
No 479
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=25.64 E-value=6.1e+02 Score=27.11 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHhc---cHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696 88 KELGNECFKQK---KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (438)
Q Consensus 88 ~~~g~~~~~~g---~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~ 161 (438)
..+-+.++..| +|.-|+..+-.+-++.|. +.+. .-|.+|+...+.-. +..++..|..+|-.|
T Consensus 261 q~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~----------~l~~~AI~sa~~~Y--~n~HvYPYty~gg~~ 328 (618)
T PF05053_consen 261 QDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPL----------ELFNEAISSARTYY--NNHHVYPYTYLGGYY 328 (618)
T ss_dssp HHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HH----------HHHHHHHHHHHHHC--TT--SHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHH----------HHHHHHHHHHHHHh--cCCccccceehhhHH
Confidence 34445555554 578888888887777765 1110 00334444333332 345677788888889
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013696 162 KELGKLKESIEDSEFAL 178 (438)
Q Consensus 162 ~~lg~~~eA~~~~~~al 178 (438)
++.++|.+|+..+-.+-
T Consensus 329 yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 329 YRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887764
No 480
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=25.58 E-value=89 Score=23.86 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=38.6
Q ss_pred HHhhhcCCHHHHHHHHHHHHhhccccHHHHHHHHHHhccCCchhH
Q 013696 349 QIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDL 393 (438)
Q Consensus 349 ~lf~~~l~~~~l~~il~~l~~~~~~~~~~~~~~L~~l~~~~RF~~ 393 (438)
+.++..+.|..|--.|.++......+++.+.+.+..|++.=|+.+
T Consensus 3 ~~L~~QInPHFl~NtLn~I~~l~~~~~~~~~~~i~~ls~~lRy~l 47 (82)
T PF06580_consen 3 KALQAQINPHFLFNTLNSISWLARIDPEKASEMILSLSDLLRYSL 47 (82)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999988777668999999999999888876
No 481
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.27 E-value=8.7e+02 Score=26.10 Aligned_cols=117 Identities=13% Similarity=0.011 Sum_probs=70.6
Q ss_pred cCCCccchHHHHHhhhcC-CCCCh---------hHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-----CCC--------
Q 013696 60 SYSRNYDPVSHISSSLMN-EESTP---------DATSEKELGNECFKQKKFKEAIDCYSRSIAL-----SPT-------- 116 (438)
Q Consensus 60 ~~g~~~eAi~~~~~al~~-~p~~~---------~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-----~p~-------- 116 (438)
...-|++|...|.-+... +|++. ....+...+.++..+|+.+-|.....++|=. .|.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677887777666553 23221 1233778999999999988887777766632 111
Q ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 013696 117 ------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-YIKAYSRRATARK-ELGKLKESIEDSEF 176 (438)
Q Consensus 117 ------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~-~~~a~~~lg~a~~-~lg~~~eA~~~~~~ 176 (438)
..+++..-..+.+.|=+..|.++|.-.+.++|. ++-+...+-..|. ...+|+--++.++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 112222223445577899999999999999998 7655444333332 33444444444443
No 482
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=25.23 E-value=32 Score=26.37 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccccHHH-HHHHHHHhccCCchhHHHhhcChhh
Q 013696 358 SILIDIVKVVATFFTGEVDL-AIKYLEYLTMVPRFDLVIMCLSLAD 402 (438)
Q Consensus 358 ~~l~~il~~l~~~~~~~~~~-~~~~L~~l~~~~RF~~~~~~ls~~e 402 (438)
.-+.++|..|+..+.++|++ ..++|..|+.-..|+=-+.-|+...
T Consensus 4 hR~nELLELL~p~Wqk~pDLnL~Q~LqkLa~eag~~~~l~~LtDdv 49 (86)
T PF06288_consen 4 HRLNELLELLQPAWQKEPDLNLMQFLQKLAQEAGFDGPLEDLTDDV 49 (86)
T ss_dssp HHHHHHHHHTHHHHHSSTTS-HHHHHHHHHHHTT-SS-TTS--HHH
T ss_pred chHHHHHHHhhHHHhcCCcccHHHHHHHHHHhcCCCCchhhccHHH
Confidence 34678899999999999987 8999999999999987777776653
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.16 E-value=3.2e+02 Score=21.94 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (438)
Q Consensus 84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~ 132 (438)
+......|...+-.|+|..|.+...++-+..+. ...|..-|.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 333567888899999999999999999877666 5555555666555553
No 484
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.69 E-value=3.2e+02 Score=30.57 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc
Q 013696 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL 113 (438)
Q Consensus 62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~ 113 (438)
..|.-|+...... ..++ ...+..+...|.-+++.|+|++|...|-++|..
T Consensus 348 ~ly~~Ai~LAk~~-~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQ-HLDE-DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhc-CCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4456666554432 1222 223444778999999999999999999999874
No 485
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.61 E-value=4.6e+02 Score=22.61 Aligned_cols=86 Identities=16% Similarity=-0.012 Sum_probs=52.4
Q ss_pred CCCCcC---cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHH-HHhccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Q 013696 54 PSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC-FKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAYL 128 (438)
Q Consensus 54 ~~~~~y---~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~-~~~g~y~~Ai~~y~~al~~-~p~~~~~~~la~~~~ 128 (438)
.+|..| .-|+...-+.+|-..-... - |.++|..+ ..+|+-++--+.+.....- .+.+..+..+|.+|.
T Consensus 59 sIGkiFDis~C~NlKrVi~C~~~~n~~s-----e--~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~ 131 (161)
T PF09205_consen 59 SIGKIFDISKCGNLKRVIECYAKRNKLS-----E--YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYK 131 (161)
T ss_dssp HHGGGS-GGG-S-THHHHHHHHHTT--------H--HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHH
T ss_pred HHhhhcCchhhcchHHHHHHHHHhcchH-----H--HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 345555 4477777777776542211 1 44666544 5566666655666665542 234899999999999
Q ss_pred HhcCHHHHHHHHHHHhhc
Q 013696 129 KLRRFQEAEDDCTEALNL 146 (438)
Q Consensus 129 ~l~~~~eA~~~~~~al~l 146 (438)
++|+..+|-+...+|-+.
T Consensus 132 klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 132 KLGNTREANELLKEACEK 149 (161)
T ss_dssp HTT-HHHHHHHHHHHHHT
T ss_pred HhcchhhHHHHHHHHHHh
Confidence 999999999988888754
No 486
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=2.7e+02 Score=27.55 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHH--HHHhccCCC---HHH-HHHHHHHHHHhcCHHHHHHHHHHH
Q 013696 70 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCY--SRSIALSPT---AVA-YANRAMAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 70 ~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y--~~al~~~p~---~~~-~~~la~~~~~l~~~~eA~~~~~~a 143 (438)
++.+-....|...+. ++..+...+.-|+|..|-.++ -+++--+|+ ..+ |..+| .-.-+.+|+.|.+++.+.
T Consensus 117 ~L~e~ynf~~e~i~~--lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 117 HLQEHYNFTPERIET--LYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHhcCCCHHHHHH--HHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHH
Confidence 333333444444444 667888888888888887764 344443443 233 43333 334456788888888877
Q ss_pred hhc
Q 013696 144 LNL 146 (438)
Q Consensus 144 l~l 146 (438)
...
T Consensus 194 re~ 196 (432)
T KOG2758|consen 194 REY 196 (432)
T ss_pred HHH
Confidence 654
No 487
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=24.25 E-value=1.6e+02 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHhccCCCH
Q 013696 87 EKELGNECFKQK-KFKEAIDCYSRSIALSPTA 117 (438)
Q Consensus 87 ~~~~g~~~~~~g-~y~~Ai~~y~~al~~~p~~ 117 (438)
...+|..+...| ++.+|+.+|-+||.+.|++
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 457899999999 9999999999999999983
No 488
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.36 E-value=4.3e+02 Score=21.90 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccC--CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 102 EAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 102 ~Ai~~y~~al~~~--p~-~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
.+.+.|....... -. +..|...|..+...|++.+|...|..+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7788887776654 33 8889999999999999999999998875
No 489
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=22.88 E-value=4.8e+02 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696 167 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (438)
Q Consensus 167 ~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (438)
.+.|..++.+|+.++|....+...+-.+...+.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 467888888888888888777666666665554
No 490
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=22.70 E-value=1.7e+02 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCHHHHHHHHhhcCCCchhHH-hhhcCCHHHHHHHHHHH
Q 013696 320 EFEVSWRGFAGDHALQARLLKAISPNALPQI-FKNALSASILIDIVKVV 367 (438)
Q Consensus 320 ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~l-f~~~l~~~~l~~il~~l 367 (438)
..-..|..| +||-.|+.||..+.+-.+..= ....++|++|.+++..=
T Consensus 52 ~in~AY~~L-~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~r 99 (166)
T PRK01356 52 ELNNAYSTL-KDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEM 99 (166)
T ss_pred HHHHHHHHh-CCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHH
Confidence 344456656 669999999998877665432 34557899999988763
No 491
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=22.46 E-value=7.7e+02 Score=24.44 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013696 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~ 142 (438)
.-+|+...+.++..+|. ..+...+..+|..+|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44566666777777776 66666666677777777777666643
No 492
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=22.29 E-value=98 Score=26.57 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhccCCHH----HHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHH
Q 013696 317 SAYEFEVSWRGFAGDHA----LQARLLKAISPNALPQIFKNALSASILIDIVKVV 367 (438)
Q Consensus 317 ~~~ef~~~w~~~~~~~~----~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l 367 (438)
.-++|.++|++-..+.. ..+..|+.++|+.|-++.+ +.++|..|
T Consensus 65 ~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~-------~~~~le~l 112 (141)
T PF08625_consen 65 KLLRFIRDWNTNSRTSHVAQRVLNAILKSHPPEELLKIPG-------LKEILEAL 112 (141)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCCHHHHHcccc-------HHHHHHHH
Confidence 56899999999876532 2357788899888777652 55666655
No 493
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=22.19 E-value=1.9e+02 Score=25.10 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696 155 SRRATARKELG-KLKESIEDSEFALRLEPQNQEIKKQLA 192 (438)
Q Consensus 155 ~~lg~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~ 192 (438)
..+|..+...| ++.+|..+|-+||.+.|.-.+..+-|.
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq 132 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35899999999 999999999999999997666554444
No 494
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.07 E-value=1.5e+02 Score=18.59 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhccCCCH
Q 013696 100 FKEAIDCYSRSIALSPTA 117 (438)
Q Consensus 100 y~~Ai~~y~~al~~~p~~ 117 (438)
++.|-..|++.+...|+.
T Consensus 3 ~dRAR~IyeR~v~~hp~~ 20 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEV 20 (32)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 444555555555555543
No 495
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=8e+02 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al 144 (438)
..++.+.|.-|.+.|+-+.|++.|.+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555555544443
No 496
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.65 E-value=6.5e+02 Score=23.28 Aligned_cols=100 Identities=13% Similarity=-0.020 Sum_probs=46.2
Q ss_pred chHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696 66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEA 143 (438)
Q Consensus 66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~a 143 (438)
.+...|.....+.++.. ....|.-+...++|++|+.++. .|. +.....+..++...|+...|+.++..
T Consensus 64 ~~~~~Fa~~f~ip~~~~----~~~~g~W~LD~~~~~~A~~~L~-----~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~- 133 (226)
T PF13934_consen 64 ELAESFARAFGIPPKYI----KFIQGFWLLDHGDFEEALELLS-----HPSLIPWFPDKILQALLRRGDPKLALRYLRA- 133 (226)
T ss_pred cHHHHHHHHhCCCHHHH----HHHHHHHHhChHhHHHHHHHhC-----CCCCCcccHHHHHHHHHHCCChhHHHHHHHh-
Confidence 34445555544443221 2244555555566666666652 222 12222334444445666666655443
Q ss_pred hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176 (438)
Q Consensus 144 l~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~ 176 (438)
..-......+....-.+ ...|...+|..+.+.
T Consensus 134 ~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 134 VGPPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred cCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 33333344443333333 445666666555443
No 497
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=21.61 E-value=1.6e+02 Score=21.10 Aligned_cols=35 Identities=6% Similarity=0.196 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 013696 399 SLADKADLRKVWDETFCNESTPIEYAEILDNLRSK 433 (438)
Q Consensus 399 s~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~ 433 (438)
.+.+-+.++.++++...+.......++.++.+++.
T Consensus 21 a~~~~Ev~~~iv~H~k~~Hg~t~I~ed~in~Ik~r 55 (59)
T COG5466 21 ADSEAEVMRRIVEHAKEAHGETEIREDMINKIKSR 55 (59)
T ss_pred cCcHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence 67888999999999998876666667888888864
No 498
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=7.9e+02 Score=24.11 Aligned_cols=83 Identities=14% Similarity=0.018 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcc----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCC
Q 013696 100 FKEAIDCYSRSIAL----SPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGK 166 (438)
Q Consensus 100 y~~Ai~~y~~al~~----~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~ 166 (438)
-++-|+-+.+.|+- +.. ..++.|+|..|...++-+.+.+++.+.+.-+- +-.-.-.++|..|..+.-
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v 170 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV 170 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence 34455555555542 322 78999999999999999999999988875432 223345678888877766
Q ss_pred HHHHHHHHHHHHhhCC
Q 013696 167 LKESIEDSEFALRLEP 182 (438)
Q Consensus 167 ~~eA~~~~~~al~l~P 182 (438)
..+.++.....++-..
T Consensus 171 V~e~lE~~~~~iEkGg 186 (412)
T COG5187 171 VEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7777777766665543
No 499
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=1.8e+02 Score=37.59 Aligned_cols=67 Identities=22% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----CC---HHHHHHHHHHHHhhCCC
Q 013696 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-----GK---LKESIEDSEFALRLEPQ 183 (438)
Q Consensus 117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l-----g~---~~eA~~~~~~al~l~P~ 183 (438)
+..+...|..+.++|++++|-+.|..|++++...+++|...|.-.... ++ -..|+.+|-+|....-+
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~ 2886 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS 2886 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc
Confidence 677888999999999999999999999999999999999999765432 21 24677777777766543
No 500
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.84 E-value=1.8e+02 Score=29.73 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHHhccHHHHHHHHHHHhccCCC------H--HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696 94 CFKQKKFKEAIDCYSRSIALSPT------A--VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (438)
Q Consensus 94 ~~~~g~y~~Ai~~y~~al~~~p~------~--~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg 165 (438)
..-.|+|.. -.+-+.++|. + .+-+..|-+|+.+++|.+|+..|..++..--.--..+-+.+.++...+
T Consensus 245 H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~in 320 (525)
T KOG3677|consen 245 HILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMIN 320 (525)
T ss_pred HHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhh
Confidence 344677443 3344556554 1 112667888888888888888887777542221222334444444444
Q ss_pred C-HHHHHHHHHHHHhhCCCC
Q 013696 166 K-LKESIEDSEFALRLEPQN 184 (438)
Q Consensus 166 ~-~~eA~~~~~~al~l~P~~ 184 (438)
+ .+.--..+.-++.+.|..
T Consensus 321 Kq~eqm~~llai~l~~yPq~ 340 (525)
T KOG3677|consen 321 KQNEQMHHLLAICLSMYPQM 340 (525)
T ss_pred hhHHHHHHHHHHHHHhCchh
Confidence 3 344444555677777743
Done!