Query 013698
Match_columns 438
No_of_seqs 243 out of 1076
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 8.9E-18 3.1E-22 136.5 6.4 62 362-423 6-67 (83)
2 1x2n_A Homeobox protein pknox1 99.7 4.1E-17 1.4E-21 128.6 7.1 65 363-427 7-71 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.2E-17 1.1E-21 128.5 6.2 61 367-427 2-62 (67)
4 2lk2_A Homeobox protein TGIF1; 99.7 3.9E-17 1.3E-21 136.2 5.5 57 367-423 9-65 (89)
5 1du6_A PBX1, homeobox protein 99.7 8.8E-17 3E-21 123.6 7.0 62 363-424 3-64 (64)
6 1le8_B Mating-type protein alp 99.6 2.4E-16 8.1E-21 127.8 7.8 64 364-427 3-66 (83)
7 1puf_B PRE-B-cell leukemia tra 99.6 2.4E-16 8.3E-21 124.2 6.9 64 364-427 2-65 (73)
8 1k61_A Mating-type protein alp 99.6 2.8E-16 9.7E-21 119.3 7.0 59 366-424 1-59 (60)
9 1b72_B Protein (PBX1); homeodo 99.6 3.5E-16 1.2E-20 126.9 6.5 63 364-426 2-64 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 5.5E-16 1.9E-20 126.3 7.0 60 363-422 27-86 (87)
11 1akh_A Protein (mating-type pr 99.5 2.2E-14 7.6E-19 109.0 6.0 58 362-422 4-61 (61)
12 2cra_A Homeobox protein HOX-B1 99.5 3.8E-14 1.3E-18 111.0 7.3 64 363-429 7-70 (70)
13 2dmu_A Homeobox protein goosec 99.5 3.2E-14 1.1E-18 111.2 6.8 64 363-429 7-70 (70)
14 2ecc_A Homeobox and leucine zi 99.5 2.7E-14 9.2E-19 115.9 6.4 58 365-425 5-62 (76)
15 2djn_A Homeobox protein DLX-5; 99.5 3.1E-14 1.1E-18 111.4 6.3 64 363-429 7-70 (70)
16 2da3_A Alpha-fetoprotein enhan 99.5 5E-14 1.7E-18 112.2 7.3 63 363-428 17-79 (80)
17 2e1o_A Homeobox protein PRH; D 99.5 3.6E-14 1.2E-18 111.1 6.2 64 363-429 7-70 (70)
18 2da2_A Alpha-fetoprotein enhan 99.5 7.1E-14 2.4E-18 109.0 7.1 63 363-428 7-69 (70)
19 2dmt_A Homeobox protein BARH-l 99.5 7.9E-14 2.7E-18 111.9 7.4 64 363-429 17-80 (80)
20 2hdd_A Protein (engrailed home 99.5 7.7E-14 2.6E-18 106.3 6.4 60 362-424 2-61 (61)
21 1bw5_A ISL-1HD, insulin gene e 99.5 1.1E-13 3.7E-18 107.1 6.9 60 363-425 3-62 (66)
22 2da4_A Hypothetical protein DK 99.4 3.3E-14 1.1E-18 113.9 3.9 65 363-427 8-73 (80)
23 2da1_A Alpha-fetoprotein enhan 99.4 1.1E-13 3.9E-18 107.9 6.1 62 363-427 7-68 (70)
24 1ig7_A Homeotic protein MSX-1; 99.4 2.1E-13 7.2E-18 102.6 6.2 57 364-423 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.4 2.2E-13 7.5E-18 104.6 6.2 59 363-424 3-61 (63)
26 1fjl_A Paired protein; DNA-bin 99.4 8E-14 2.7E-18 111.9 3.6 62 362-426 17-78 (81)
27 1jgg_A Segmentation protein EV 99.4 2.7E-13 9.1E-18 103.0 6.2 57 364-423 2-58 (60)
28 2vi6_A Homeobox protein nanog; 99.4 3.5E-13 1.2E-17 103.0 6.5 58 363-423 3-60 (62)
29 3rkq_A Homeobox protein NKX-2. 99.4 3.2E-13 1.1E-17 100.9 6.0 57 363-422 2-58 (58)
30 1wh5_A ZF-HD homeobox family p 99.4 3.1E-13 1.1E-17 109.4 6.2 62 363-424 17-79 (80)
31 2l7z_A Homeobox protein HOX-A1 99.4 4.8E-13 1.6E-17 105.7 7.1 62 363-427 7-68 (73)
32 2k40_A Homeobox expressed in E 99.4 3.9E-13 1.3E-17 104.2 6.3 60 364-426 2-61 (67)
33 1ahd_P Antennapedia protein mu 99.4 2.6E-13 8.9E-18 105.9 5.2 62 363-427 2-63 (68)
34 2dmq_A LIM/homeobox protein LH 99.4 3.3E-13 1.1E-17 107.8 6.0 58 363-423 7-64 (80)
35 1ftt_A TTF-1 HD, thyroid trans 99.4 5.4E-13 1.8E-17 104.0 6.3 61 363-426 2-62 (68)
36 2dms_A Homeobox protein OTX2; 99.4 6.5E-13 2.2E-17 106.4 6.3 61 363-426 7-67 (80)
37 2dn0_A Zinc fingers and homeob 99.4 8.2E-13 2.8E-17 105.0 6.8 60 365-427 10-69 (76)
38 1nk2_P Homeobox protein VND; h 99.4 7.2E-13 2.5E-17 105.6 6.0 58 363-423 9-66 (77)
39 1zq3_P PRD-4, homeotic bicoid 99.3 7.3E-13 2.5E-17 103.2 5.4 59 363-424 2-60 (68)
40 3a02_A Homeobox protein arista 99.3 1E-12 3.6E-17 99.8 6.1 56 367-425 3-58 (60)
41 2cue_A Paired box protein PAX6 99.3 7.1E-13 2.4E-17 106.3 5.3 59 363-424 7-65 (80)
42 1yz8_P Pituitary homeobox 2; D 99.3 3.2E-13 1.1E-17 105.1 3.0 61 363-426 3-63 (68)
43 2kt0_A Nanog, homeobox protein 99.3 1.2E-12 4.2E-17 105.3 6.4 60 363-425 22-81 (84)
44 2m0c_A Homeobox protein arista 99.3 1.8E-12 6E-17 101.9 6.9 61 363-426 9-69 (75)
45 1b8i_A Ultrabithorax, protein 99.3 1.5E-12 5.1E-17 104.9 6.6 60 363-425 20-79 (81)
46 2da5_A Zinc fingers and homeob 99.3 1.8E-12 6.1E-17 103.1 6.7 60 365-427 9-68 (75)
47 1puf_A HOX-1.7, homeobox prote 99.3 1.6E-12 5.3E-17 103.6 6.3 59 363-424 13-71 (77)
48 2ly9_A Zinc fingers and homeob 99.3 2.8E-12 9.6E-17 101.0 7.5 64 364-430 7-70 (74)
49 2d5v_A Hepatocyte nuclear fact 99.3 1.4E-12 4.6E-17 117.1 6.3 66 360-428 94-159 (164)
50 2hi3_A Homeodomain-only protei 99.3 2E-12 6.9E-17 102.0 5.8 59 364-425 3-62 (73)
51 3a03_A T-cell leukemia homeobo 99.3 2.1E-12 7.1E-17 97.1 5.6 53 369-424 3-55 (56)
52 1uhs_A HOP, homeodomain only p 99.3 2.4E-12 8.3E-17 101.2 6.0 59 365-425 3-61 (72)
53 3a01_A Homeodomain-containing 99.3 1.8E-12 6.2E-17 107.2 5.5 60 363-425 17-76 (93)
54 2cuf_A FLJ21616 protein; homeo 99.3 1.8E-12 6E-17 107.3 5.3 59 363-424 7-80 (95)
55 3d1n_I POU domain, class 6, tr 99.3 2.9E-12 1E-16 114.0 6.5 58 363-423 93-150 (151)
56 2r5y_A Homeotic protein sex co 99.3 3E-12 1E-16 104.3 6.1 61 362-425 27-87 (88)
57 2cqx_A LAG1 longevity assuranc 99.3 6.1E-12 2.1E-16 99.9 6.6 61 365-428 10-71 (72)
58 3nar_A ZHX1, zinc fingers and 99.3 6.3E-12 2.2E-16 104.2 6.8 59 364-425 26-84 (96)
59 2ecb_A Zinc fingers and homeob 99.3 7.6E-12 2.6E-16 103.9 7.0 53 368-423 16-68 (89)
60 1b72_A Protein (homeobox prote 99.3 4.5E-12 1.5E-16 105.2 5.5 60 362-424 33-92 (97)
61 3nau_A Zinc fingers and homeob 99.2 4.7E-12 1.6E-16 100.5 5.0 52 369-423 10-61 (66)
62 2e19_A Transcription factor 8; 99.2 1.1E-11 3.7E-16 96.6 6.8 58 366-426 6-63 (64)
63 1wh7_A ZF-HD homeobox family p 99.2 4E-12 1.4E-16 103.2 4.3 61 363-424 17-79 (80)
64 2dmp_A Zinc fingers and homeob 99.2 1.2E-11 4.2E-16 101.6 7.2 58 366-426 16-73 (89)
65 1e3o_C Octamer-binding transcr 99.2 1.4E-11 4.7E-16 110.9 6.9 60 362-424 100-159 (160)
66 2xsd_C POU domain, class 3, tr 99.2 1.3E-11 4.4E-16 112.0 6.6 65 361-428 97-161 (164)
67 1au7_A Protein PIT-1, GHF-1; c 99.2 2E-11 6.8E-16 108.6 6.9 60 362-424 86-145 (146)
68 1wi3_A DNA-binding protein SAT 99.2 2.8E-11 9.5E-16 97.1 6.9 66 362-429 6-71 (71)
69 1x2m_A LAG1 longevity assuranc 99.2 3E-11 1E-15 95.0 6.4 56 372-429 9-64 (64)
70 1lfb_A Liver transcription fac 99.1 3.5E-11 1.2E-15 101.5 5.9 64 360-426 6-90 (99)
71 2l9r_A Homeobox protein NKX-3. 99.1 5.8E-11 2E-15 94.2 6.7 56 369-427 10-65 (69)
72 3l1p_A POU domain, class 5, tr 99.1 3.1E-11 1.1E-15 108.2 4.2 60 362-424 95-154 (155)
73 2da6_A Hepatocyte nuclear fact 99.1 6.1E-11 2.1E-15 101.1 5.5 58 363-423 6-84 (102)
74 1mh3_A Maltose binding-A1 home 99.0 2.8E-10 9.6E-15 111.0 5.2 54 366-422 368-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.9 7.7E-10 2.6E-14 105.5 5.8 56 363-421 142-218 (221)
76 1ic8_A Hepatocyte nuclear fact 98.9 5.6E-10 1.9E-14 104.3 3.4 58 363-423 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.8 4.8E-09 1.6E-13 84.3 6.4 47 372-421 14-60 (71)
78 2nzz_A Penetratin conjugated G 95.3 0.0027 9.2E-08 45.1 -0.2 17 408-424 1-17 (37)
79 2ys9_A Homeobox and leucine zi 95.1 0.02 7E-07 45.9 4.1 44 370-416 13-56 (70)
80 1hlv_A CENP-B, major centromer 57.3 20 0.00069 29.3 5.9 50 365-420 3-52 (131)
81 2glo_A Brinker CG9653-PA; prot 50.1 19 0.00064 26.1 4.1 49 366-418 2-50 (59)
82 2o8x_A Probable RNA polymerase 46.5 14 0.00048 26.7 2.9 50 368-425 14-63 (70)
83 3hug_A RNA polymerase sigma fa 45.1 12 0.00041 29.3 2.5 47 369-423 37-83 (92)
84 2jqq_A Conserved oligomeric go 41.9 31 0.0011 32.5 5.1 39 244-284 82-120 (204)
85 2elh_A CG11849-PA, LD40883P; s 41.2 52 0.0018 25.6 5.7 46 365-418 18-63 (87)
86 1iuf_A Centromere ABP1 protein 40.9 40 0.0014 28.8 5.4 50 364-419 6-62 (144)
87 1tc3_C Protein (TC3 transposas 38.9 35 0.0012 22.1 3.8 42 368-417 4-45 (51)
88 3swk_A Vimentin; cytoskeleton, 38.3 1E+02 0.0035 24.9 7.1 48 236-283 20-76 (86)
89 2p7v_B Sigma-70, RNA polymeras 34.1 31 0.0011 25.3 3.2 54 369-426 5-58 (68)
90 3mzy_A RNA polymerase sigma-H 33.8 21 0.00071 29.2 2.4 45 370-423 110-154 (164)
91 1tty_A Sigma-A, RNA polymerase 32.8 32 0.0011 26.7 3.1 53 369-425 18-70 (87)
92 1ku3_A Sigma factor SIGA; heli 32.6 31 0.0011 25.6 3.0 53 368-424 9-62 (73)
93 2rnj_A Response regulator prot 32.4 74 0.0025 24.6 5.3 49 369-426 29-77 (91)
94 1rp3_A RNA polymerase sigma fa 28.5 29 0.001 30.3 2.5 48 368-423 186-233 (239)
95 3c57_A Two component transcrip 28.3 54 0.0018 25.9 3.8 49 369-426 27-75 (95)
96 1or7_A Sigma-24, RNA polymeras 28.0 29 0.001 29.5 2.4 47 370-424 141-187 (194)
97 1fse_A GERE; helix-turn-helix 26.6 67 0.0023 23.2 3.8 50 367-425 9-58 (74)
98 2q1z_A RPOE, ECF SIGE; ECF sig 26.1 20 0.0007 30.3 1.0 47 369-423 135-181 (184)
99 1sse_B AP-1 like transcription 25.7 54 0.0018 27.1 3.4 29 156-187 20-48 (86)
100 1je8_A Nitrate/nitrite respons 25.5 42 0.0014 25.8 2.7 48 369-425 21-68 (82)
101 3bd1_A CRO protein; transcript 25.4 38 0.0013 25.3 2.3 23 396-418 14-36 (79)
102 3kz3_A Repressor protein CI; f 24.9 91 0.0031 23.1 4.4 39 375-416 39-77 (80)
103 4a8j_C Elongator complex prote 24.9 27 0.00091 34.4 1.7 18 42-59 43-60 (280)
104 1xc0_A Pardaxin P-4, PA4; BEND 24.4 38 0.0013 23.0 1.8 22 176-197 5-26 (33)
105 1s7o_A Hypothetical UPF0122 pr 23.9 48 0.0016 27.5 2.9 47 369-423 22-68 (113)
106 3lsg_A Two-component response 23.8 1.1E+02 0.0037 23.8 4.9 40 374-416 3-42 (103)
107 2r1j_L Repressor protein C2; p 23.4 37 0.0013 23.8 1.9 23 396-418 21-43 (68)
108 2xi8_A Putative transcription 23.3 37 0.0013 23.6 1.8 23 396-418 17-39 (66)
109 3ol1_A Vimentin; structural ge 23.2 2.4E+02 0.0081 23.8 7.1 47 237-283 41-96 (119)
110 1zug_A Phage 434 CRO protein; 23.1 37 0.0013 24.1 1.8 23 396-418 19-41 (71)
111 1b72_A Protein (homeobox prote 22.1 18 0.00063 29.1 -0.1 25 403-427 3-27 (97)
112 1adr_A P22 C2 repressor; trans 20.7 45 0.0015 24.0 1.9 23 396-418 21-43 (76)
113 2k27_A Paired box protein PAX- 20.6 2.8E+02 0.0096 23.1 7.2 61 367-430 81-148 (159)
114 3bs3_A Putative DNA-binding pr 20.6 46 0.0016 24.0 1.9 23 396-418 26-48 (76)
115 1x3u_A Transcriptional regulat 20.3 77 0.0026 23.3 3.1 47 370-425 17-63 (79)
116 1jko_C HIN recombinase, DNA-in 20.2 1.5E+02 0.0052 19.3 4.4 41 368-416 4-44 (52)
117 2jpc_A SSRB; DNA binding prote 20.2 80 0.0027 22.1 3.1 29 397-425 17-45 (61)
118 2wiu_B HTH-type transcriptiona 20.1 62 0.0021 24.0 2.6 23 396-418 28-50 (88)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=136.47 Aligned_cols=62 Identities=42% Similarity=0.768 Sum_probs=58.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
.++|+|+.|+++++.+|+.||.+|..+|||+.++|..||..|||+..||.+||+|+|+|.|+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcH
Confidence 35677889999999999999999999999999999999999999999999999999999975
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=4.1e-17 Score=128.58 Aligned_cols=65 Identities=46% Similarity=0.847 Sum_probs=60.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.+|+|+.|++.++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|++...
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 46677899999999999999999999999999999999999999999999999999999887654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.2e-17 Score=128.45 Aligned_cols=61 Identities=41% Similarity=0.796 Sum_probs=53.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.|+||++++.+|+.||.+|..+|||+..+|..||..+||+..||.+||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999987543
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-17 Score=136.19 Aligned_cols=57 Identities=39% Similarity=0.687 Sum_probs=54.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
..-||++++.+|+.||.+|..+|||++++|..||..|||+.+||+|||+|+|+|.|+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 356999999999999999999999999999999999999999999999999999986
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=8.8e-17 Score=123.57 Aligned_cols=62 Identities=31% Similarity=0.583 Sum_probs=58.3
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.++++..|+.++..+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35677899999999999999999999999999999999999999999999999999998873
No 6
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=2.4e-16 Score=127.75 Aligned_cols=64 Identities=22% Similarity=0.438 Sum_probs=58.0
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.+++..|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 4455669999999999999999999999999999999999999999999999999999886544
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=2.4e-16 Score=124.16 Aligned_cols=64 Identities=31% Similarity=0.599 Sum_probs=60.2
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
+|+|..|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5778899999999999999999999999999999999999999999999999999999886654
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=2.8e-16 Score=119.33 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=56.1
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 366 krgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
|++.|++++..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 45789999999999999999999999999999999999999999999999999998874
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=3.5e-16 Score=126.85 Aligned_cols=63 Identities=32% Similarity=0.608 Sum_probs=58.6
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
+|+|..|++.++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 577889999999999999999999999999999999999999999999999999999987543
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=5.5e-16 Score=126.27 Aligned_cols=60 Identities=25% Similarity=0.534 Sum_probs=56.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~k 422 (438)
++|+|..|+++++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456678899999999999999999999999999999999999999999999999999976
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.50 E-value=2.2e-14 Score=108.99 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=47.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~k 422 (438)
.++|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34566789999999999999998 68999999999999999999999999999999864
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=3.8e-14 Score=110.96 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=59.1
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++.+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~G 70 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCCC
Confidence 4667789999999999999998 889999999999999999999999999999999999887653
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=111.22 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=59.1
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..++.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~G 70 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSSG 70 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCCC
Confidence 4667789999999999999998 889999999999999999999999999999999998887653
No 14
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.7e-14 Score=115.85 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=54.2
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 46788999999999999998 78999999999999999999999999999999988754
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=111.40 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=58.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ssg 70 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSSG 70 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCCC
Confidence 4567789999999999999976 889999999999999999999999999999999999887753
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=5e-14 Score=112.18 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=58.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~ 428 (438)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 4567789999999999999998 78999999999999999999999999999999999988764
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=3.6e-14 Score=111.09 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=59.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~sG 70 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSSG 70 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCCC
Confidence 4567789999999999999988 889999999999999999999999999999999998887653
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=109.04 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=58.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~ 428 (438)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4667789999999999999998 88999999999999999999999999999999999877664
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.9e-14 Score=111.88 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=58.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++.+
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ssg 80 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSSG 80 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCCC
Confidence 3566778999999999999998 889999999999999999999999999999999999887753
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.46 E-value=7.7e-14 Score=106.33 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=52.6
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35677889999999999999998 8899999999999999999999999999999998764
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.45 E-value=1.1e-13 Score=107.07 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=56.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
++|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4677789999999999999998 89999999999999999999999999999999988764
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=113.92 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=57.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H-~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
++|+|..|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 45667789999999999999885 445999999999999999999999999999999999875443
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=107.90 Aligned_cols=62 Identities=29% Similarity=0.510 Sum_probs=57.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4567789999999999999998 8899999999999999999999999999999999887654
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=2.1e-13 Score=102.63 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=53.4
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999998 889999999999999999999999999999999765
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.41 E-value=2.2e-13 Score=104.58 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=54.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4677889999999999999998 8899999999999999999999999999999998764
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.41 E-value=8e-14 Score=111.93 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=56.4
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 45667789999999999999988 889999999999999999999999999999999887543
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.40 E-value=2.7e-13 Score=103.03 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=53.2
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 467789999999999999998 889999999999999999999999999999999876
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.40 E-value=3.5e-13 Score=102.97 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=51.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4567789999999999999988 889999999999999999999999999999999876
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=100.94 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=52.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~k 422 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999976 89999999999999999999999999999999864
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.39 E-value=3.1e-13 Score=109.41 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=56.7
Q ss_pred hccCCCCCCcchHHHHHHHHHh-cCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQS-HSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~-H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
+||+|..|+.+++..|+.+|.. ++++|||+..++..||..+||++.||.+||+|+|.|.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 4667788999999999999986 6779999999999999999999999999999999998764
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.39 E-value=4.8e-13 Score=105.75 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=56.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4567789999999999999998 8899999999999999999999999999999999886543
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.39 E-value=3.9e-13 Score=104.18 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=55.4
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567789999999999999976 899999999999999999999999999999999887654
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.39 E-value=2.6e-13 Score=105.94 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=57.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5677889999999999999998 8899999999999999999999999999999999876543
No 34
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=107.78 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=54.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 4677889999999999999998 789999999999999999999999999999999876
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.37 E-value=5.4e-13 Score=103.98 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=56.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5677789999999999999998 889999999999999999999999999999999887654
No 36
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=6.5e-13 Score=106.37 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=55.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567789999999999999998 889999999999999999999999999999999876543
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.2e-13 Score=105.01 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=55.2
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
+.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 45678999999999999988 8899999999999999999999999999999999886554
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.35 E-value=7.2e-13 Score=105.57 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=53.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 3556778999999999999998 889999999999999999999999999999999875
No 39
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.34 E-value=7.3e-13 Score=103.23 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=54.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4677789999999999999987 8899999999999999999999999999999998764
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.34 E-value=1e-12 Score=99.76 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=49.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999988 88999999999999999999999999999999988753
No 41
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=7.1e-13 Score=106.33 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=54.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 4677789999999999999986 8899999999999999999999999999999998763
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.34 E-value=3.2e-13 Score=105.09 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=56.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677789999999999999987 899999999999999999999999999999999877544
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=105.31 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=55.3
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999988 88999999999999999999999999999999987753
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=101.87 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=55.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3556678999999999999997 889999999999999999999999999999999887654
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.33 E-value=1.5e-12 Score=104.94 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=53.3
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4667789999999999999998 88999999999999999999999999999999988754
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=103.10 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=54.7
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
+|+.+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 45567999999999999998 8899999999999999999999999999999999876543
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.32 E-value=1.6e-12 Score=103.64 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=54.5
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999998 8899999999999999999999999999999998764
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=100.97 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=57.9
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCCc
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTST 430 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~~ 430 (438)
++.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+-
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~ 70 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCL 70 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCCT
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCCC
Confidence 456789999999999999998 8899999999999999999999999999999999887665443
No 49
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.32 E-value=1.4e-12 Score=117.15 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=53.9
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013698 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (438)
Q Consensus 360 e~~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~ 428 (438)
....+|+|..|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 3445777889999999999999998 68999999999999999999999999999999998865543
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=2e-12 Score=102.01 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred ccCCCCCCcchHHHHHHHHH-hcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQ-SHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~-~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
.++|..|+.++..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999998 5 78999999999999999999999999999999887644
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=97.13 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=49.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5889999999999988 8899999999999999999999999999999998763
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=2.4e-12 Score=101.16 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.0
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
|+|..|+.++..+|+.+|.. .+|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56688999999999999972 178999999999999999999999999999999987644
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.30 E-value=1.8e-12 Score=107.21 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=55.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
++|+|..|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4567789999999999999998 88999999999999999999999999999999987643
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=1.8e-12 Score=107.26 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=54.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TG---------------Ls~kQVnNWFiNrRkR~kK~ 424 (438)
++|+|..|+..++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999998 88999999999999999 99999999999999998763
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=114.01 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=53.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556678999999999999998 889999999999999999999999999999999875
No 56
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.29 E-value=3e-12 Score=104.32 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=53.6
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
..+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35677789999999999999986 88999999999999999999999999999999988753
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=6.1e-12 Score=99.95 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=55.1
Q ss_pred cCCCCCCcchHHHHHHHH-HhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013698 365 RRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~ 428 (438)
++++.++.++..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.|.|+..++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 455678889999999999 76 78999999999999999999999999999999998877664
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=104.25 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=54.6
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 466789999999999999997 88999999999999999999999999999999988764
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=7.6e-12 Score=103.91 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=49.8
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
+.|+.+++.+|+.+|.. +|||+..+|..||..+||+..||.+||+|+|.|.++
T Consensus 16 k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 47999999999999988 889999999999999999999999999999988755
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=4.5e-12 Score=105.15 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
..+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45667789999999999999987 8899999999999999999999999999999998764
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.25 E-value=4.7e-12 Score=100.45 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=48.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
+-+++++..|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 3467899999999998 889999999999999999999999999999999775
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=96.58 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=51.8
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 366 krgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.+..+.++++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 3456778999999999976 889999999999999999999999999999999877543
No 63
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.24 E-value=4e-12 Score=103.18 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=54.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSH--SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H--~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
+||+|..|+.+++..|+ -|..+ ..+|||+..++..||..+||++.||.+||+|+|.+.+++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 46777889999999999 57774 348999999999999999999999999999999998764
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=101.61 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=52.3
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 366 krgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
|..+++.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3345999999999999998 889999999999999999999999999999999876544
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.21 E-value=1.4e-11 Score=110.89 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=53.6
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35667789999999999999998 8899999999999999999999999999999998875
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.21 E-value=1.3e-11 Score=111.98 Aligned_cols=65 Identities=17% Similarity=0.377 Sum_probs=52.1
Q ss_pred HhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013698 361 ILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (438)
Q Consensus 361 ~~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~ 428 (438)
..++|+|..|+..++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred ccCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 345667789999999999999998 88999999999999999999999999999999998877653
No 67
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.19 E-value=2e-11 Score=108.59 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=53.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34566789999999999999998 8899999999999999999999999999999998764
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=2.8e-11 Score=97.05 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=59.9
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
.+||.|+.|+.++..+|+..|.. .+|||+.++++.||.+|||++.+|..||+|+|--.++..++++
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~~ 71 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSSG 71 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCCC
Confidence 45778889999999999999987 3669999999999999999999999999999999999888753
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=3e-11 Score=95.04 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013698 372 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (438)
Q Consensus 372 kea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s~~ 429 (438)
......|+..|.. .++||+..++..||.++||++.||..||+|+|.+.|+..||.+
T Consensus 9 ~~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 9 AQPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp SCHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred chHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 3468999999943 2679999999999999999999999999999999998888754
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.15 E-value=3.5e-11 Score=101.45 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=52.2
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhHH
Q 013698 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQR 418 (438)
Q Consensus 360 e~~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~------------------TG---Ls~kQVnNWFiNrR 418 (438)
..+++|+|..|+..+..+|+.+|.. +|||+..+|+.||.. +| |+..||.+||+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3445667789999999999999987 889999999999999 77 99999999999999
Q ss_pred hhcccCCC
Q 013698 419 KRNWHSNP 426 (438)
Q Consensus 419 kR~kK~~~ 426 (438)
++.+....
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 99876543
No 71
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=5.8e-11 Score=94.17 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=50.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.++..+...|+.+|.. +|||+..+|..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 3577889999999988 8899999999999999999999999999999998876543
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.11 E-value=3.1e-11 Score=108.23 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=54.4
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 362 ~kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
.++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 34666778999999999999975 8999999999999999999999999999999998875
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=101.10 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=53.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhHHhhc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 421 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~T---------------------GLs~kQVnNWFiNrRkR~ 421 (438)
++|+|..|++.++.+|+.+|.. +|||+..+|+.||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566778999999999999987 8899999999999999 799999999999999998
Q ss_pred cc
Q 013698 422 WH 423 (438)
Q Consensus 422 kK 423 (438)
++
T Consensus 83 kr 84 (102)
T 2da6_A 83 AF 84 (102)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.98 E-value=2.8e-10 Score=111.02 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=49.9
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013698 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (438)
Q Consensus 366 krgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~k 422 (438)
.+..|.+.++..|+..|.. +|||++.+|..||..|||+++||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467899999999999987 78999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.92 E-value=7.7e-10 Score=105.45 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=51.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHhhc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 421 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TG---------------------Ls~kQVnNWFiNrRkR~ 421 (438)
++|.|.+|++.++.+|+.||.. +|||+..+|+.||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4566678999999999999998 88999999999999998 89999999999999975
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.89 E-value=5.6e-10 Score=104.30 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=52.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHhhc
Q 013698 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 421 (438)
Q Consensus 363 kkRkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TG---------------------Ls~kQVnNWFiNrRkR~ 421 (438)
++|+|..|++.++.+|+.+|.. +|||+..+|+.||..|+ |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4567789999999999999998 78999999999999999 99999999999999997
Q ss_pred cc
Q 013698 422 WH 423 (438)
Q Consensus 422 kK 423 (438)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=4.8e-09 Score=84.31 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhc
Q 013698 372 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 421 (438)
Q Consensus 372 kea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~ 421 (438)
++++.+|+..|.. +|||+.+++..||..+||+++.|..||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 6789999999998 8899999999999999999999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.31 E-value=0.0027 Score=45.08 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.9
Q ss_pred hhhhhhhhhHHhhcccC
Q 013698 408 KQINNWFINQRKRNWHS 424 (438)
Q Consensus 408 kQVnNWFiNrRkR~kK~ 424 (438)
.||..||+|+|.|.|+.
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 48999999999998764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.05 E-value=0.02 Score=45.86 Aligned_cols=44 Identities=27% Similarity=0.522 Sum_probs=40.2
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013698 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (438)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiN 416 (438)
.++..+++|+++|..|. ...+++-..|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 45667899999999987 899999999999999999999999964
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=57.34 E-value=20 Score=29.28 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=38.4
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhh
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR 420 (438)
++|..|+.+.+..+..++.. .+.++. ..+|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35678999998777777755 345552 368899999999999999887664
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=50.10 E-value=19 Score=26.12 Aligned_cols=49 Identities=6% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 013698 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 366 krgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrR 418 (438)
++++++.+.+..+...+.. . ++.......+|..+|++...|.+|....+
T Consensus 2 ~r~~ys~efK~~~~~~~~~-g---~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN-D---NDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C---TTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCCcCCHHHHHHHHHHHHc-C---CCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3467888876655554433 1 12112256899999999999999965433
No 82
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.50 E-value=14 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=38.2
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
..||...+.+|...|.... + -..+|...|++...|.++....|++.++..
T Consensus 14 ~~L~~~~r~il~l~~~~g~----s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGL----S----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCC----C----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcCC----C----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3588888888877654422 2 347899999999999999999999887643
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.06 E-value=12 Score=29.27 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
.||...+.+|...|.+.+ .-..+|..+|++..-|..+....|++.++
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388888888877554422 24579999999999999999999998875
No 84
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=41.91 E-value=31 Score=32.47 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHhhC
Q 013698 244 THYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 284 (438)
Q Consensus 244 eaYC~mL~kYkEEL~kP~~~~~~EA~~Fc~~IEsQL~sL~~ 284 (438)
..|-.-|-....-|..+.+ ..|.+.+|+++-..|..+|+
T Consensus 82 l~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 4577888888888888764 67999999999999999997
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=41.19 E-value=52 Score=25.56 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=31.6
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 013698 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 365 RkrgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrR 418 (438)
+++++++.+.+......+.. . + -...+|+.+|++...|..|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g---~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-G---E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-T---C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-C---C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34567888875554444433 2 1 245889999999999999986544
No 86
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.91 E-value=40 Score=28.81 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=38.1
Q ss_pred ccCCCCCCcchHHHHHHHH-HhcCCCCCCCHHHHHHHHH----Hh--CCChhhhhhhhhhHHh
Q 013698 364 KRRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQ----ET--GLQLKQINNWFINQRK 419 (438)
Q Consensus 364 kRkrgkLpkea~~iLk~Wf-~~H~~~PYPSe~eK~~LA~----~T--GLs~kQVnNWFiNrRk 419 (438)
+++|..|+-+.+..|..|+ .. +|-.+. ..||. .+ |++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5677899999999999888 44 444443 34666 78 8899999999987554
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.88 E-value=35 Score=22.13 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=28.5
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNr 417 (438)
..++.+.+..+...+... + ....+|+.+|++..-|..|+...
T Consensus 4 ~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 457777664444444431 2 25578999999999999998543
No 88
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.28 E-value=1e+02 Score=24.87 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHHhh
Q 013698 236 DKELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (438)
Q Consensus 236 DPELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~Fc~~IEsQL~sL~ 283 (438)
.-|+|..-.+--+...||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777888888887653 23445688888889999998886
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.14 E-value=31 Score=25.26 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.||+..+.+|...|.-.....+ .-.++|+.+|++...|..+....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888766511000112 22578999999999999999999999887543
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.84 E-value=21 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
||...+.+|. .|... | .-.++|+.+|++...|.++....|++.++
T Consensus 110 L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888888888 33331 2 23579999999999999999999998875
No 91
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.81 E-value=32 Score=26.71 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
.||...+.+|...|.-.....+ .-..+|..+|++..-|..+....+++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4888888888776641000111 2347899999999999999999999988754
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.58 E-value=31 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=38.4
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc-cC
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HS 424 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~k-K~ 424 (438)
..||...+.+|...|.-.....+ .-.++|..+|++...|..|....+++.+ ..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 35888888888776641000111 1247999999999999999999999988 43
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.38 E-value=74 Score=24.63 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.||...+.+|..+ .+- |.. .++|..+|++..-|.++....|++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4888888888764 332 222 378999999999999999999999876543
No 94
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.50 E-value=29 Score=30.26 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
..||...+.+|...|... |+ -.++|+.+|++...|..+....|++.++
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----LP----AKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----CC----HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 348999999998766542 22 3479999999999999999999998875
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.30 E-value=54 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=38.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~~ 426 (438)
.|+...+.+|...+.. | .-.++|..+|++..-|.++....|++.+..+.
T Consensus 27 ~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG-----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp CCCHHHHHHHHHHHTT-----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 5888888888775322 2 12579999999999999999999999887654
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.05 E-value=29 Score=29.46 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013698 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (438)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~ 424 (438)
||...+.+|...|...+ + -.++|+.+|++...|.++....|++.++.
T Consensus 141 L~~~~r~vl~l~~~~g~----s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL----S----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTCC----C----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC----C----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 78888888876554422 2 24799999999999999999999998764
No 97
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=26.56 E-value=67 Score=23.20 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=38.1
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
...|+...+.+|..++.. + .-.++|+.+|++..-|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~~~g-----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD-----K----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHcC-----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 356888888888764221 2 2357999999999999999999888876543
No 98
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.12 E-value=20 Score=30.27 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
.||...+.+|.-.|...+ +| .++|+.+|++...|.++....|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388888899887665533 33 268999999999999999999999875
No 99
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=25.73 E-value=54 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=18.6
Q ss_pred CCCcccccCCCccchhhhHHHHHHHhhCCChH
Q 013698 156 SEGVVVESGADGVVNWQNARYKAEILSHPLYE 187 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~~e~e~lKAkI~sHPlYp 187 (438)
.+.||. +..+.++.. ..+=.+|.+||+|.
T Consensus 20 ~~~vvp-s~~g~lL~c--~~iWd~I~shP~~~ 48 (86)
T 1sse_B 20 DNDVVP-SKEGSLLRC--SEIWDRITTHPKYS 48 (86)
T ss_dssp CCCSSC-CSSCCEECH--HHHHHHHHTCSCCS
T ss_pred cCeeee-CCCcceecH--HHHHHHHhcCcchh
Confidence 344555 333345443 45678999999998
No 100
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.48 E-value=42 Score=25.81 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
.|+...+.+|..++.. + .-.++|+.+|++..-|.++....+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLIAQG-----L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4777788888764221 2 3457999999999999999999999887654
No 101
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.42 E-value=38 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 102
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.94 E-value=91 Score=23.09 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013698 375 TSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (438)
Q Consensus 375 ~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiN 416 (438)
...+..|..-.. .|+...-..||..+|++...+.-|+.-
T Consensus 39 ~~~is~~e~g~~---~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 39 QSAVAALFNGIN---ALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHHHTTSS---CCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHHHcCCC---CCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 455666654432 488899999999999999999888754
No 103
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=24.92 E-value=27 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.6
Q ss_pred cccCCCCchhhHHHHHhh
Q 013698 42 SIETTAPNWLNSALLRSQ 59 (438)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (438)
...++.|+||.++++-..
T Consensus 43 ~~~gTsp~WLin~lves~ 60 (280)
T 4a8j_C 43 HQSCTQPLWMINALVETH 60 (280)
T ss_dssp ECTTSCCHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHH
Confidence 346778999999999864
No 104
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=24.45 E-value=38 Score=22.97 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=17.4
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 013698 176 YKAEILSHPLYEQLLSAHVACL 197 (438)
Q Consensus 176 lKAkI~sHPlYp~LL~AyidCl 197 (438)
+-.||++-|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999999865443
No 105
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.93 E-value=48 Score=27.52 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013698 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (438)
Q Consensus 369 kLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK 423 (438)
.||+..+.++...|.... .-..+|..+|++..-|..|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388888888877655422 23579999999999999999999988765
No 106
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.79 E-value=1.1e+02 Score=23.79 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013698 374 TTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (438)
Q Consensus 374 a~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiN 416 (438)
....+..|..+|+..|-++.+ .||+.+|++...+...|.-
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHH
Confidence 345667788888766555544 5788888888888777754
No 107
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.42 E-value=37 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999987643
No 108
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=23.33 E-value=37 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 109
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.25 E-value=2.4e+02 Score=23.81 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHHhh
Q 013698 237 KELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (438)
Q Consensus 237 PELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~Fc~~IEsQL~sL~ 283 (438)
-|+|..-.+.-+...||.+|+..- +++..+++++.--.+|.++.+|.
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 344544444445555666665442 22344566666667888888887
No 110
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.13 E-value=37 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|+.|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 111
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=22.05 E-value=18 Score=29.13 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=8.3
Q ss_pred hCCChhhhhhhhhhHHhhcccCCCC
Q 013698 403 TGLQLKQINNWFINQRKRNWHSNPS 427 (438)
Q Consensus 403 TGLs~kQVnNWFiNrRkR~kK~~~s 427 (438)
.+....+|--||.+.|...+....+
T Consensus 3 ~~~~~~~~~~W~~~~r~~~~~~~~~ 27 (97)
T 1b72_A 3 PNTPTARTFDWMKVKRNPPKTAKVS 27 (97)
T ss_dssp -----CCCCGGGGC-----------
T ss_pred CCCCCcccccccccccCCCCCCCCC
Confidence 4667788889999999876654433
No 112
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.74 E-value=45 Score=23.98 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987643
No 113
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.64 E-value=2.8e+02 Score=23.14 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=37.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHH-HHHHHh------CCChhhhhhhhhhHHhhcccCCCCCCc
Q 013698 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKA-RLVQET------GLQLKQINNWFINQRKRNWHSNPSTST 430 (438)
Q Consensus 367 rgkLpkea~~iLk~Wf~~H~~~PYPSe~eK~-~LA~~T------GLs~kQVnNWFiNrRkR~kK~~~s~~~ 430 (438)
+.+++.+....+..++.+ .|--+..+.. .|.... .++...|..|+...+..-.+..-..++
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~ 148 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGA 148 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCC
Confidence 346777777888888876 3444444332 233221 489999999998777665544433333
No 114
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.61 E-value=46 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987653
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.34 E-value=77 Score=23.30 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 370 Lpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
||...+.+|..++.. +. -.++|..+|++...|..++...+++.+..+
T Consensus 17 L~~~e~~vl~l~~~g-----~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVVAG-----LP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHTTT-----CC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHcC-----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 566677777654221 22 247999999999999999999999987654
No 116
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.24 E-value=1.5e+02 Score=19.31 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013698 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (438)
Q Consensus 368 gkLpkea~~iLk~Wf~~H~~~PYPSe~eK~~LA~~TGLs~kQVnNWFiN 416 (438)
..++.+....+...+... + ....+|+.+|++..-|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~~~g----~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKG----H----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHTT----C----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCCCHHHHHHHHHH
Confidence 456666555555544431 1 2457899999999999999854
No 117
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.24 E-value=80 Score=22.13 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013698 397 ARLVQETGLQLKQINNWFINQRKRNWHSN 425 (438)
Q Consensus 397 ~~LA~~TGLs~kQVnNWFiNrRkR~kK~~ 425 (438)
.++|...|++..-|.++..+.+++....+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999887644
No 118
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.08 E-value=62 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013698 396 KARLVQETGLQLKQINNWFINQR 418 (438)
Q Consensus 396 K~~LA~~TGLs~kQVnNWFiNrR 418 (438)
...||+.+|++...|+.|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34799999999999999998743
Done!