Query 013700
Match_columns 438
No_of_seqs 378 out of 3615
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 2.4E-77 5.2E-82 622.4 37.3 416 1-425 90-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 4E-60 8.7E-65 491.1 34.2 337 3-424 92-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 2.9E-57 6.2E-62 471.6 34.0 341 3-424 100-441 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 2.7E-40 5.9E-45 315.6 15.1 179 17-274 83-265 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 3E-33 6.5E-38 274.2 16.7 187 3-272 93-280 (280)
6 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 1.6E-32 3.4E-37 266.0 13.8 170 17-272 99-271 (271)
7 CHL00202 argB acetylglutamate 100.0 1.8E-31 3.9E-36 262.3 17.1 175 17-273 104-283 (284)
8 PRK00942 acetylglutamate kinas 100.0 1.7E-29 3.6E-34 248.6 17.2 175 20-275 107-283 (283)
9 cd04238 AAK_NAGK-like AAK_NAGK 100.0 3.2E-29 7E-34 243.1 16.3 170 23-272 86-256 (256)
10 PLN02512 acetylglutamate kinas 100.0 1.6E-29 3.5E-34 251.1 14.1 176 17-273 128-308 (309)
11 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 4.9E-29 1.1E-33 244.8 17.2 177 17-272 95-279 (279)
12 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 1.4E-28 3.1E-33 237.3 13.9 169 16-272 75-248 (248)
13 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 2E-28 4.3E-33 237.5 14.7 172 17-272 77-257 (257)
14 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 1.1E-27 2.4E-32 231.8 17.3 171 17-272 80-252 (252)
15 PRK14058 acetylglutamate/acety 99.9 1.2E-27 2.7E-32 233.4 14.6 175 16-274 80-267 (268)
16 PRK12352 putative carbamate ki 99.9 8.6E-28 1.9E-32 237.5 11.3 189 2-274 84-315 (316)
17 KOG2436 Acetylglutamate kinase 99.9 2.7E-28 5.9E-33 246.0 0.9 334 18-363 175-518 (520)
18 PRK04531 acetylglutamate kinas 99.9 2.1E-25 4.7E-30 227.5 19.1 229 73-390 122-356 (398)
19 TIGR00761 argB acetylglutamate 99.9 3.8E-25 8.3E-30 211.4 16.6 123 19-148 80-205 (231)
20 COG1246 ArgA N-acetylglutamate 99.9 1.3E-23 2.9E-28 184.0 10.6 147 278-424 1-148 (153)
21 cd04241 AAK_FomA-like AAK_FomA 99.9 9.4E-22 2E-26 190.4 10.6 164 19-272 83-252 (252)
22 cd02115 AAK Amino Acid Kinases 99.8 5E-20 1.1E-24 177.3 12.6 155 23-272 84-248 (248)
23 PRK12353 putative amino acid k 99.8 1.8E-18 3.9E-23 172.0 12.3 186 4-273 85-313 (314)
24 cd04260 AAK_AKi-DapG-BS AAK_AK 99.8 6.4E-18 1.4E-22 162.9 13.6 115 21-148 84-210 (244)
25 PRK12686 carbamate kinase; Rev 99.8 1.9E-18 4.1E-23 170.2 8.9 158 35-273 131-311 (312)
26 cd04261 AAK_AKii-LysC-BS AAK_A 99.7 9.2E-18 2E-22 161.3 13.1 113 23-148 82-205 (239)
27 cd04246 AAK_AK-DapG-like AAK_A 99.7 1.4E-17 3E-22 160.0 13.3 113 23-148 82-205 (239)
28 PRK09411 carbamate kinase; Rev 99.7 1.5E-17 3.3E-22 161.9 12.5 134 57-273 146-296 (297)
29 PRK12454 carbamate kinase-like 99.7 1.5E-17 3.2E-22 163.6 11.8 129 66-273 171-312 (313)
30 PRK07757 acetyltransferase; Pr 99.7 6.8E-16 1.5E-20 137.1 17.4 135 278-414 2-136 (152)
31 cd04242 AAK_G5K_ProB AAK_G5K_P 99.7 5.2E-17 1.1E-21 157.2 10.7 130 70-273 113-251 (251)
32 cd04256 AAK_P5CS_ProBA AAK_P5C 99.7 1.5E-16 3.3E-21 156.2 11.9 132 68-273 138-284 (284)
33 PF00696 AA_kinase: Amino acid 99.7 1.5E-16 3.2E-21 152.6 11.3 101 33-146 100-211 (242)
34 PRK05429 gamma-glutamyl kinase 99.7 9.8E-17 2.1E-21 163.4 10.1 135 68-276 119-263 (372)
35 TIGR00746 arcC carbamate kinas 99.7 1.5E-16 3.3E-21 157.3 11.1 128 67-273 169-309 (310)
36 PRK12354 carbamate kinase; Rev 99.7 4.4E-16 9.6E-21 152.9 12.8 135 58-275 146-301 (307)
37 PRK12314 gamma-glutamyl kinase 99.7 1.6E-16 3.4E-21 155.0 9.3 133 67-274 120-264 (266)
38 PRK10146 aminoalkylphosphonic 99.7 1.1E-15 2.3E-20 134.1 12.7 124 277-400 3-138 (144)
39 cd04235 AAK_CK AAK_CK: Carbama 99.6 7.7E-16 1.7E-20 151.7 11.1 127 67-273 168-308 (308)
40 cd04234 AAK_AK AAK_AK: Amino A 99.6 8.6E-16 1.9E-20 146.5 10.9 113 23-148 68-192 (227)
41 PTZ00489 glutamate 5-kinase; P 99.6 1.1E-15 2.5E-20 148.3 11.1 130 70-274 118-259 (264)
42 PRK13402 gamma-glutamyl kinase 99.6 1.1E-15 2.5E-20 154.8 10.6 131 71-275 119-258 (368)
43 PRK08210 aspartate kinase I; R 99.6 2E-15 4.4E-20 155.8 12.5 114 23-149 89-213 (403)
44 PRK07922 N-acetylglutamate syn 99.6 1.3E-14 2.9E-19 132.1 15.5 127 276-404 4-131 (169)
45 COG0263 ProB Glutamate 5-kinas 99.6 2.6E-15 5.7E-20 147.4 10.1 136 67-276 116-261 (369)
46 PTZ00330 acetyltransferase; Pr 99.6 3.5E-14 7.6E-19 124.9 15.7 121 277-400 6-141 (147)
47 PRK06635 aspartate kinase; Rev 99.6 1.2E-14 2.6E-19 150.1 13.6 113 23-148 84-207 (404)
48 PRK12308 bifunctional arginino 99.6 3.9E-14 8.5E-19 153.5 17.2 136 278-415 464-599 (614)
49 TIGR00656 asp_kin_monofn aspar 99.6 2.3E-14 5E-19 147.9 13.6 113 23-148 84-208 (401)
50 TIGR01027 proB glutamate 5-kin 99.6 1.1E-14 2.4E-19 147.9 10.3 131 71-274 115-253 (363)
51 PF13527 Acetyltransf_9: Acety 99.5 5.1E-14 1.1E-18 121.0 11.7 119 279-398 1-127 (127)
52 PRK03624 putative acetyltransf 99.5 1.3E-13 2.9E-18 119.1 14.4 121 277-402 2-132 (140)
53 TIGR00657 asp_kinases aspartat 99.5 3.7E-14 8.1E-19 148.1 12.6 114 23-148 123-247 (441)
54 PLN02418 delta-1-pyrroline-5-c 99.5 3.4E-14 7.4E-19 155.8 12.6 142 67-282 136-290 (718)
55 PRK08841 aspartate kinase; Val 99.5 5.7E-14 1.2E-18 144.0 13.3 113 23-148 84-207 (392)
56 COG1608 Predicted archaeal kin 99.5 2.6E-14 5.7E-19 133.5 9.8 139 62-273 109-251 (252)
57 cd04244 AAK_AK-LysC-like AAK_A 99.5 2.7E-14 5.8E-19 141.4 10.0 117 23-148 136-263 (298)
58 TIGR03827 GNAT_ablB putative b 99.5 2.3E-13 4.9E-18 132.9 15.8 124 277-401 115-246 (266)
59 TIGR01092 P5CS delta l-pyrroli 99.5 5.1E-14 1.1E-18 154.6 11.8 137 69-278 130-279 (715)
60 PRK07431 aspartate kinase; Pro 99.5 2.2E-13 4.8E-18 147.1 14.3 113 23-148 84-209 (587)
61 KOG3216 Diamine acetyltransfer 99.5 9E-13 2E-17 114.7 15.1 124 277-400 3-146 (163)
62 PRK09491 rimI ribosomal-protei 99.5 9.9E-13 2.2E-17 116.0 15.6 118 278-401 2-126 (146)
63 PRK10140 putative acetyltransf 99.5 1.6E-12 3.5E-17 115.9 15.8 123 278-401 4-142 (162)
64 PLN02706 glucosamine 6-phospha 99.5 7.4E-13 1.6E-17 117.3 13.4 122 276-400 5-144 (150)
65 PF13673 Acetyltransf_10: Acet 99.5 1.3E-12 2.9E-17 110.1 14.0 103 287-395 1-117 (117)
66 TIGR02382 wecD_rffC TDP-D-fuco 99.5 8.2E-13 1.8E-17 122.5 13.8 124 277-401 43-186 (191)
67 PF00583 Acetyltransf_1: Acety 99.5 8.1E-13 1.8E-17 104.6 11.8 75 322-396 1-83 (83)
68 COG0549 ArcC Carbamate kinase 99.5 2.9E-13 6.3E-18 129.1 10.5 129 66-273 170-311 (312)
69 PHA00673 acetyltransferase dom 99.5 1.3E-12 2.9E-17 116.2 13.8 119 282-400 11-146 (154)
70 cd04240 AAK_UC AAK_UC: Unchara 99.5 2.3E-13 5E-18 127.6 9.2 74 69-142 80-158 (203)
71 cd04255 AAK_UMPK-MosAB AAK_UMP 99.4 3.1E-13 6.6E-18 131.4 10.2 80 65-144 120-213 (262)
72 PRK09831 putative acyltransfer 99.4 1.1E-12 2.3E-17 116.3 12.7 115 278-402 1-128 (147)
73 TIGR02406 ectoine_EctA L-2,4-d 99.4 1.1E-12 2.5E-17 117.8 12.9 120 280-399 1-127 (157)
74 PRK06291 aspartate kinase; Pro 99.4 4.3E-13 9.2E-18 140.9 11.3 114 23-147 140-266 (465)
75 PF13523 Acetyltransf_8: Acety 99.4 1.4E-12 3E-17 115.8 13.0 127 280-406 1-147 (152)
76 PF13420 Acetyltransf_4: Acety 99.4 5.7E-12 1.2E-16 111.8 16.5 121 280-401 1-140 (155)
77 KOG1154 Gamma-glutamyl kinase 99.4 2.3E-13 4.9E-18 126.2 6.6 133 70-275 135-276 (285)
78 COG1247 Sortase and related ac 99.4 6.1E-12 1.3E-16 113.6 15.4 145 278-426 2-165 (169)
79 PRK10975 TDP-fucosamine acetyl 99.4 3.8E-12 8.3E-17 118.2 14.5 124 277-401 46-189 (194)
80 KOG3139 N-acetyltransferase [G 99.4 4.4E-12 9.5E-17 111.7 12.8 100 318-424 57-163 (165)
81 TIGR01575 rimI ribosomal-prote 99.4 5.4E-12 1.2E-16 107.9 11.7 109 287-401 1-117 (131)
82 PF13508 Acetyltransf_7: Acety 99.4 1E-11 2.2E-16 98.2 12.4 75 318-397 4-79 (79)
83 PRK10314 putative acyltransfer 99.4 4.4E-12 9.6E-17 113.7 11.4 122 280-401 9-135 (153)
84 cd04239 AAK_UMPK-like AAK_UMPK 99.4 2.3E-12 5E-17 123.1 9.7 118 67-273 105-229 (229)
85 PRK10514 putative acetyltransf 99.3 1.5E-11 3.2E-16 108.0 13.3 114 278-402 2-128 (145)
86 TIGR02076 pyrH_arch uridylate 99.3 4.6E-12 9.9E-17 120.4 9.8 122 70-273 93-221 (221)
87 TIGR03103 trio_acet_GNAT GNAT- 99.3 1.8E-11 3.8E-16 130.9 14.2 122 276-401 81-218 (547)
88 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.3 7.7E-12 1.7E-16 118.9 10.3 125 67-273 90-221 (221)
89 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.3 8.6E-12 1.9E-16 119.3 9.5 118 67-273 107-231 (231)
90 TIGR01686 FkbH FkbH-like domai 99.3 5.8E-11 1.3E-15 119.0 15.9 122 275-398 184-319 (320)
91 PRK00358 pyrH uridylate kinase 99.3 1E-11 2.3E-16 118.7 9.9 116 69-273 109-231 (231)
92 COG0456 RimI Acetyltransferase 99.3 4.5E-11 9.8E-16 108.2 13.0 125 275-401 9-155 (177)
93 COG3153 Predicted acetyltransf 99.3 1.3E-10 2.8E-15 105.2 14.6 127 276-405 2-136 (171)
94 PRK10151 ribosomal-protein-L7/ 99.2 2.7E-10 5.9E-15 104.0 16.3 125 276-401 9-156 (179)
95 PRK15130 spermidine N1-acetylt 99.2 2E-10 4.2E-15 105.6 15.1 125 276-401 5-146 (186)
96 TIGR03585 PseH pseudaminic aci 99.2 1.1E-10 2.5E-15 103.5 12.6 121 279-401 2-139 (156)
97 PRK01346 hypothetical protein; 99.2 1.1E-10 2.4E-15 120.7 14.1 124 275-400 4-136 (411)
98 PRK10562 putative acetyltransf 99.2 2.1E-10 4.6E-15 101.1 13.4 112 280-401 2-126 (145)
99 PRK08373 aspartate kinase; Val 99.2 1.5E-10 3.2E-15 116.4 13.5 109 23-145 120-242 (341)
100 TIGR03448 mycothiol_MshD mycot 99.2 5.5E-10 1.2E-14 109.9 16.8 125 276-400 148-288 (292)
101 TIGR03448 mycothiol_MshD mycot 99.2 5.5E-10 1.2E-14 110.0 15.7 114 281-400 4-128 (292)
102 PRK14558 pyrH uridylate kinase 99.2 8.4E-11 1.8E-15 112.5 9.6 119 67-274 105-230 (231)
103 PHA01807 hypothetical protein 99.2 5.6E-10 1.2E-14 100.0 14.1 112 282-393 8-136 (153)
104 KOG3396 Glucosamine-phosphate 99.2 2.6E-10 5.6E-15 97.5 11.1 119 278-399 7-143 (150)
105 COG0527 LysC Aspartokinases [A 99.2 2.5E-10 5.4E-15 118.6 12.4 114 23-149 129-254 (447)
106 PF13302 Acetyltransf_3: Acety 99.1 1.1E-09 2.3E-14 95.3 14.5 118 278-396 2-142 (142)
107 PRK13688 hypothetical protein; 99.1 3.1E-10 6.8E-15 102.0 9.8 107 278-401 18-134 (156)
108 cd02169 Citrate_lyase_ligase C 99.1 3.4E-10 7.3E-15 111.9 10.8 75 319-399 8-83 (297)
109 PRK10809 ribosomal-protein-S5- 99.1 2.3E-09 4.9E-14 99.3 15.7 123 278-401 18-167 (194)
110 cd04259 AAK_AK-DapDC AAK_AK-Da 99.1 1.2E-09 2.7E-14 107.9 13.2 119 23-148 129-260 (295)
111 TIGR02075 pyrH_bact uridylate 99.1 6.3E-10 1.4E-14 106.6 10.1 117 68-273 109-233 (233)
112 cd04245 AAK_AKiii-YclM-BS AAK_ 99.0 2.6E-09 5.6E-14 105.2 13.5 114 23-149 130-254 (288)
113 TIGR02078 AspKin_pair Pyrococc 99.0 2.4E-09 5.3E-14 107.0 12.5 79 67-145 144-232 (327)
114 TIGR00124 cit_ly_ligase [citra 99.0 8.4E-09 1.8E-13 103.6 15.9 81 315-401 29-110 (332)
115 cd04243 AAK_AK-HSDH-like AAK_A 99.0 2.7E-09 5.9E-14 105.5 11.8 113 23-149 134-259 (293)
116 KOG3235 Subunit of the major N 99.0 2.8E-10 6E-15 99.7 3.7 140 278-424 2-152 (193)
117 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.0 4.8E-09 1E-13 103.8 12.0 112 23-148 135-259 (294)
118 PRK14557 pyrH uridylate kinase 98.9 5.3E-09 1.2E-13 100.9 9.6 122 66-277 111-241 (247)
119 PRK05925 aspartate kinase; Pro 98.8 1.3E-08 2.7E-13 106.1 10.4 112 23-148 120-244 (440)
120 PRK09034 aspartate kinase; Rev 98.8 4.2E-08 9.2E-13 102.9 13.1 114 23-149 130-254 (454)
121 PRK09084 aspartate kinase III; 98.8 4.1E-08 9E-13 102.8 11.8 111 23-148 127-253 (448)
122 COG2153 ElaA Predicted acyltra 98.8 5.2E-08 1.1E-12 84.6 10.0 90 314-403 47-139 (155)
123 PRK14556 pyrH uridylate kinase 98.8 3E-08 6.4E-13 95.3 9.1 118 68-274 124-248 (249)
124 cd04258 AAK_AKiii-LysC-EC AAK_ 98.7 7.5E-08 1.6E-12 95.1 11.6 112 23-149 131-258 (292)
125 PF08445 FR47: FR47-like prote 98.7 1.3E-07 2.8E-12 76.5 10.7 59 343-401 22-83 (86)
126 PRK08961 bifunctional aspartat 98.7 9.2E-08 2E-12 107.8 12.6 81 68-148 177-269 (861)
127 PLN02551 aspartokinase 98.7 1.2E-07 2.6E-12 100.7 11.9 114 23-149 183-313 (521)
128 PRK09436 thrA bifunctional asp 98.7 1.2E-07 2.6E-12 106.0 12.4 112 23-148 137-261 (819)
129 KOG2488 Acetyltransferase (GNA 98.7 1.4E-07 2.9E-12 85.5 9.6 116 286-401 54-183 (202)
130 KOG3397 Acetyltransferases [Ge 98.6 1.5E-07 3.3E-12 83.8 9.5 79 322-400 62-141 (225)
131 cd04247 AAK_AK-Hom3 AAK_AK-Hom 98.6 3.4E-07 7.3E-12 91.0 12.4 71 79-149 189-270 (306)
132 KOG3138 Predicted N-acetyltran 98.6 5.7E-08 1.2E-12 89.1 6.1 124 277-401 16-153 (187)
133 COG3393 Predicted acetyltransf 98.6 2.6E-07 5.7E-12 88.1 10.5 78 322-400 182-262 (268)
134 KOG3234 Acetyltransferase, (GN 98.6 1.6E-07 3.5E-12 82.5 7.6 122 279-400 3-131 (173)
135 cd04301 NAT_SF N-Acyltransfera 98.6 4.9E-07 1.1E-11 65.8 8.6 62 320-381 2-64 (65)
136 COG3981 Predicted acetyltransf 98.5 7.9E-07 1.7E-11 79.6 10.6 123 278-401 4-160 (174)
137 PRK09466 metL bifunctional asp 98.5 7.4E-07 1.6E-11 99.3 11.7 112 23-149 140-265 (810)
138 COG1670 RimL Acetyltransferase 98.5 2.7E-06 5.9E-11 76.6 12.6 123 279-402 11-160 (187)
139 TIGR01211 ELP3 histone acetylt 98.4 1.1E-06 2.3E-11 93.3 11.1 84 318-401 412-517 (522)
140 PF14542 Acetyltransf_CG: GCN5 98.4 4.1E-06 9E-11 66.4 10.3 70 321-393 3-72 (78)
141 COG3818 Predicted acetyltransf 98.2 1.5E-06 3.3E-11 74.1 5.0 128 276-405 6-153 (167)
142 PRK09181 aspartate kinase; Val 98.2 1E-05 2.2E-10 85.2 12.1 80 70-149 182-276 (475)
143 PF13718 GNAT_acetyltr_2: GNAT 98.2 2.5E-05 5.4E-10 72.5 12.8 86 317-402 27-178 (196)
144 cd04248 AAK_AK-Ectoine AAK_AK- 98.2 2.3E-05 5E-10 77.4 12.4 79 71-149 177-270 (304)
145 COG3053 CitC Citrate lyase syn 98.1 3.3E-05 7.2E-10 74.5 12.3 111 277-400 3-115 (352)
146 PF12746 GNAT_acetyltran: GNAT 98.0 0.0001 2.2E-09 71.7 12.9 118 278-401 129-248 (265)
147 COG0528 PyrH Uridylate kinase 97.9 0.0001 2.2E-09 69.6 10.4 73 68-145 113-193 (238)
148 PF12568 DUF3749: Acetyltransf 97.9 0.00016 3.4E-09 62.1 10.4 103 283-398 10-123 (128)
149 KOG4144 Arylalkylamine N-acety 97.8 7E-06 1.5E-10 72.0 1.7 121 276-400 10-161 (190)
150 COG2388 Predicted acetyltransf 97.8 0.00013 2.8E-09 60.3 7.9 63 317-380 15-77 (99)
151 COG1444 Predicted P-loop ATPas 97.7 0.00043 9.3E-09 75.8 13.2 60 341-401 530-592 (758)
152 PF04958 AstA: Arginine N-succ 97.7 0.00031 6.6E-09 70.4 11.0 147 277-427 1-211 (342)
153 PF04768 DUF619: Protein of un 97.7 9.5E-05 2.1E-09 67.3 6.7 132 258-397 2-143 (170)
154 COG2054 Uncharacterized archae 97.7 5.8E-05 1.3E-09 68.2 4.9 69 75-143 88-163 (212)
155 COG4552 Eis Predicted acetyltr 97.6 0.00015 3.3E-09 71.8 7.1 83 317-400 39-127 (389)
156 PRK10456 arginine succinyltran 97.5 0.00059 1.3E-08 68.2 9.3 147 277-427 1-209 (344)
157 PF00765 Autoind_synth: Autoin 97.4 0.0019 4.1E-08 59.6 11.8 115 285-399 7-154 (182)
158 TIGR03694 exosort_acyl putativ 97.3 0.0046 9.9E-08 59.6 12.7 121 277-398 7-196 (241)
159 COG0454 WecD Histone acetyltra 97.3 0.00049 1.1E-08 54.5 5.1 44 348-395 87-130 (156)
160 PF08444 Gly_acyl_tr_C: Aralky 97.2 0.0013 2.8E-08 53.2 6.8 70 324-399 6-79 (89)
161 TIGR03245 arg_AOST_alph argini 97.1 0.0019 4.1E-08 64.5 8.7 144 280-427 2-208 (336)
162 TIGR03243 arg_catab_AOST argin 97.1 0.0021 4.6E-08 64.1 8.8 144 280-427 2-207 (335)
163 TIGR03244 arg_catab_AstA argin 97.1 0.0017 3.8E-08 64.8 7.9 144 280-427 2-207 (336)
164 KOG4135 Predicted phosphogluco 97.0 0.009 2E-07 52.4 10.6 124 278-401 14-171 (185)
165 PRK13834 putative autoinducer 96.9 0.012 2.7E-07 55.3 12.1 114 285-398 15-163 (207)
166 PF13480 Acetyltransf_6: Acety 96.9 0.021 4.6E-07 48.9 12.4 98 284-383 27-135 (142)
167 PF06852 DUF1248: Protein of u 96.9 0.019 4.2E-07 52.7 12.5 81 320-400 49-137 (181)
168 COG3916 LasI N-acyl-L-homoseri 96.3 0.064 1.4E-06 50.0 11.5 117 283-399 12-162 (209)
169 COG3882 FkbH Predicted enzyme 96.2 0.011 2.4E-07 61.2 6.9 124 276-401 412-551 (574)
170 COG5628 Predicted acetyltransf 95.8 0.04 8.7E-07 46.7 7.3 78 317-396 37-119 (143)
171 COG1243 ELP3 Histone acetyltra 95.2 0.025 5.4E-07 58.4 4.7 51 351-401 459-510 (515)
172 PF02799 NMT_C: Myristoyl-CoA: 94.4 0.53 1.1E-05 43.6 10.9 115 280-399 31-164 (190)
173 COG3138 AstA Arginine/ornithin 94.3 0.098 2.1E-06 50.8 6.1 89 277-365 1-142 (336)
174 PRK01305 arginyl-tRNA-protein 93.8 1.5 3.2E-05 42.3 13.1 92 290-383 107-208 (240)
175 PF01853 MOZ_SAS: MOZ/SAS fami 93.6 0.61 1.3E-05 43.0 9.7 104 267-375 4-113 (188)
176 COG3375 Uncharacterized conser 93.6 0.71 1.5E-05 43.6 10.2 106 279-384 4-116 (266)
177 KOG0456 Aspartate kinase [Amin 93.5 0.084 1.8E-06 53.4 4.2 71 79-149 258-340 (559)
178 PF13880 Acetyltransf_13: ESCO 93.5 0.11 2.3E-06 40.2 3.8 30 342-371 5-34 (70)
179 cd04264 DUF619-NAGS DUF619 dom 93.3 0.3 6.5E-06 40.5 6.6 67 319-390 10-80 (99)
180 PF01233 NMT: Myristoyl-CoA:pr 93.2 2.4 5.3E-05 38.1 12.5 54 325-378 87-146 (162)
181 PF04377 ATE_C: Arginine-tRNA- 93.0 1.5 3.3E-05 38.0 10.8 77 305-383 21-103 (128)
182 KOG2535 RNA polymerase II elon 92.7 0.15 3.2E-06 50.8 4.5 50 352-401 497-548 (554)
183 PRK14852 hypothetical protein; 92.5 0.83 1.8E-05 52.1 10.6 123 279-401 30-182 (989)
184 TIGR03019 pepcterm_femAB FemAB 92.5 1.6 3.5E-05 43.7 11.9 81 319-401 197-282 (330)
185 KOG2779 N-myristoyl transferas 91.8 1.7 3.6E-05 43.7 10.6 116 279-399 262-396 (421)
186 cd04265 DUF619-NAGS-U DUF619 d 91.7 0.51 1.1E-05 39.1 5.9 67 319-390 11-80 (99)
187 PTZ00064 histone acetyltransfe 91.7 0.66 1.4E-05 48.6 8.0 102 266-375 307-417 (552)
188 KOG2036 Predicted P-loop ATPas 91.5 0.54 1.2E-05 51.1 7.3 84 342-430 614-750 (1011)
189 PLN03238 probable histone acet 91.2 0.46 1E-05 46.5 6.0 49 326-375 140-188 (290)
190 PLN03239 histone acetyltransfe 88.8 0.9 1.9E-05 45.8 5.9 102 266-375 136-246 (351)
191 PF05301 Mec-17: Touch recepto 88.3 1.9 4.2E-05 36.7 6.8 46 344-392 48-97 (120)
192 PLN00104 MYST -like histone ac 87.5 0.64 1.4E-05 48.4 4.2 49 326-375 291-339 (450)
193 COG2401 ABC-type ATPase fused 86.0 0.61 1.3E-05 48.2 3.0 58 341-398 240-306 (593)
194 PF12261 T_hemolysin: Thermost 83.0 6.7 0.00014 36.1 8.2 107 284-399 6-141 (179)
195 PF09390 DUF1999: Protein of u 82.8 33 0.00072 30.3 13.1 121 278-399 1-140 (161)
196 PF09924 DUF2156: Uncharacteri 82.1 14 0.0003 36.4 10.9 65 318-383 181-246 (299)
197 TIGR03827 GNAT_ablB putative b 81.8 5.8 0.00013 38.5 7.8 62 358-427 21-83 (266)
198 PHA01733 hypothetical protein 81.3 4.5 9.7E-05 36.1 6.1 119 279-400 4-132 (153)
199 PF13444 Acetyltransf_5: Acety 80.2 4.2 9.1E-05 33.4 5.4 46 319-364 32-100 (101)
200 COG5630 ARG2 Acetylglutamate s 79.7 5.5 0.00012 40.5 6.8 94 286-390 345-448 (495)
201 KOG2747 Histone acetyltransfer 79.3 2.4 5.1E-05 43.5 4.2 102 266-375 185-293 (396)
202 KOG4601 Uncharacterized conser 76.6 5.6 0.00012 37.8 5.5 53 341-396 107-164 (264)
203 PF02474 NodA: Nodulation prot 76.4 6 0.00013 36.0 5.4 53 341-394 84-137 (196)
204 PF11124 Pho86: Inorganic phos 75.6 19 0.0004 35.8 9.0 91 315-405 167-277 (304)
205 KOG2779 N-myristoyl transferas 70.6 11 0.00024 38.0 6.3 52 325-376 144-201 (421)
206 KOG2696 Histone acetyltransfer 67.8 7.3 0.00016 39.5 4.4 56 327-382 199-258 (403)
207 KOG3698 Hyaluronoglucosaminida 67.8 11 0.00025 40.3 5.9 127 276-402 678-880 (891)
208 COG5027 SAS2 Histone acetyltra 67.7 3 6.4E-05 41.9 1.6 98 267-372 186-292 (395)
209 cd04266 DUF619-NAGS-FABP DUF61 66.4 23 0.00049 29.9 6.4 67 319-390 11-87 (108)
210 COG2935 Putative arginyl-tRNA: 64.2 94 0.002 30.1 10.8 106 276-383 96-215 (253)
211 PHA00432 internal virion prote 57.7 37 0.00081 29.8 6.4 111 279-400 2-121 (137)
212 PF07395 Mig-14: Mig-14; Inte 52.8 75 0.0016 31.1 8.3 102 279-380 128-242 (264)
213 PF04339 DUF482: Protein of un 50.7 1.6E+02 0.0035 30.3 10.8 113 283-400 210-329 (370)
214 PRK00756 acyltransferase NodA; 47.8 45 0.00098 30.3 5.4 57 341-398 84-144 (196)
215 COG5092 NMT1 N-myristoyl trans 47.2 67 0.0014 32.1 7.0 99 279-377 83-200 (451)
216 KOG3014 Protein involved in es 47.2 1E+02 0.0023 29.8 8.1 32 341-372 182-213 (257)
217 cd03173 DUF619-like DUF619 dom 45.5 94 0.002 25.6 6.7 65 320-390 12-79 (98)
218 PF11039 DUF2824: Protein of u 45.1 2.1E+02 0.0046 25.0 8.9 81 317-401 38-123 (151)
219 PRK15312 antimicrobial resista 43.2 1.4E+02 0.003 29.7 8.5 99 279-377 156-269 (298)
220 COG5092 NMT1 N-myristoyl trans 41.4 97 0.0021 31.0 7.1 121 278-398 259-412 (451)
221 COG2898 Uncharacterized conser 34.0 1.6E+02 0.0034 31.9 7.9 64 319-383 395-458 (538)
222 PF04339 DUF482: Protein of un 33.6 1.4E+02 0.003 30.8 7.2 82 317-398 44-158 (370)
223 PHA02769 hypothetical protein; 33.4 32 0.0007 29.1 2.1 42 360-401 94-140 (154)
224 PRK02983 lysS lysyl-tRNA synth 31.1 3.2E+02 0.0069 32.5 10.4 58 324-383 428-485 (1094)
225 cd08353 Glo_EDI_BRP_like_7 Thi 30.4 1.4E+02 0.003 25.1 5.8 29 376-404 4-35 (142)
226 PF11305 DUF3107: Protein of u 28.5 96 0.0021 24.3 3.9 27 99-125 20-47 (74)
227 TIGR02990 ectoine_eutA ectoine 28.0 1.3E+02 0.0029 28.8 5.7 38 363-400 107-151 (239)
228 cd07235 MRD Mitomycin C resist 26.9 72 0.0016 26.0 3.3 15 384-398 12-26 (122)
229 cd04263 DUF619-NAGK-FABP DUF61 25.0 3.1E+02 0.0067 22.6 6.5 51 319-370 11-61 (98)
230 PF00411 Ribosomal_S11: Riboso 23.8 2.2E+02 0.0047 23.8 5.6 44 360-403 45-95 (110)
231 PF02388 FemAB: FemAB family; 23.5 8.3E+02 0.018 25.2 12.5 55 325-381 301-355 (406)
232 cd09012 Glo_EDI_BRP_like_24 Th 21.6 1E+02 0.0023 25.2 3.3 16 384-399 12-27 (124)
233 PF02388 FemAB: FemAB family; 20.5 1.8E+02 0.0038 30.3 5.3 100 300-401 15-141 (406)
234 PRK10976 putative hydrolase; P 20.2 2.9E+02 0.0064 26.2 6.6 74 62-146 17-93 (266)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=2.4e-77 Score=622.38 Aligned_cols=416 Identities=81% Similarity=1.254 Sum_probs=378.3
Q ss_pred CccccchhhhhHhhhCCCCCcccccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCC
Q 013700 1 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 80 (438)
Q Consensus 1 ~~~~g~~~~~~~a~ls~~~~l~~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g 80 (438)
|+++|.+|..|++.||+++++-.|+++|++.+++.+||++.|||+++|+|++++|++||||||+|++||++.|+.+|++|
T Consensus 90 ~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g 169 (515)
T PLN02825 90 MEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSN 169 (515)
T ss_pred HHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCC
Confidence 46899999999999999998669999999988888999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCccccCCCcccccCCHHHHHHHHHhhhhhhhHHHhHhh
Q 013700 81 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVK 160 (438)
Q Consensus 81 ~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~ 160 (438)
.||||+|+|++++|+++|||+|++|+++|.+|+|+|||||||+++++.++++|++|+.+|++++++++..|+.++|++.+
T Consensus 170 ~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~~~~~~~~~~ 249 (515)
T PLN02825 170 CIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQSEIAANYVK 249 (515)
T ss_pred CeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhcchhhhhhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999999887778889999999
Q ss_pred hhhcccccc---cCCC-------CCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccch
Q 013700 161 AVAEEDITC---FGHS-------DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 230 (438)
Q Consensus 161 ~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (438)
|+++++.+. +..+ ++.+.|- +.+....|.++.+++++.|. +..++|++|++|++++..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 320 (515)
T PLN02825 250 AVGGEDYSYSLGLDSVNTTPFNNNGRGFWG--------SGSATDSFQNGVGFDNGNGL-SGEQGFAIGGEERLSRLNGYL 320 (515)
T ss_pred hccccccccccccccccccccccccccccc--------cccccccccccccccCcccc-cccccccccchhhchhhhhHH
Confidence 998886442 1100 0001110 01222335566666665552 567899999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHH
Q 013700 231 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE 310 (438)
Q Consensus 231 ~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e 310 (438)
.||.+|++||+.||+|+||+|++.+++||.||||++|.||+|++++|..||+++.+|++.|.+|++++...+....++++
T Consensus 321 ~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e 400 (515)
T PLN02825 321 SELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGILVRRTDE 400 (515)
T ss_pred HHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCCcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHH
Q 013700 311 ELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 390 (438)
Q Consensus 311 ~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY 390 (438)
.++.++.++++++.|++++||+.++++.+...++|.+++|+|+|||+|+|++||++++++|+++|++.+++.++++.+||
T Consensus 401 ~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~~fY 480 (515)
T PLN02825 401 ELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTADWF 480 (515)
T ss_pred HHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHHHHH
Confidence 99999999999999999999999998877788999999999999999999999999999999999999999999999999
Q ss_pred HHCCCeEeceeccchHhhhhhcCCCCceEEEEccC
Q 013700 391 KSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 425 (438)
Q Consensus 391 ~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll 425 (438)
+++||++++...||..++..||++|+|++|||++.
T Consensus 481 ~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 481 VRRGFSECSIESLPEARRKRINLSRGSKYYMKKLL 515 (515)
T ss_pred HHCCCEEeChhhCCHHHHhhcCccCCcEEEEEecC
Confidence 99999999999999999999999999999999873
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=4e-60 Score=491.06 Aligned_cols=337 Identities=43% Similarity=0.730 Sum_probs=306.1
Q ss_pred cccchhhhhHhhhCCCCCcccccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCce
Q 013700 3 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 82 (438)
Q Consensus 3 ~~g~~~~~~~a~ls~~~~l~~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~I 82 (438)
++|.++..+++.|+.+.. ..++.++|++|.||++++|+|+++.+++|+|+||+|++||++.|+.+|++|+|
T Consensus 92 ~~g~vn~~l~~~l~~~~~---------~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~i 162 (429)
T TIGR01890 92 AAGTLRLAIEARLSMSLS---------NTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSI 162 (429)
T ss_pred HhChHHHHHHHHHHhcCC---------cccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCe
Confidence 367777777777765533 33444678999999999999998778899999999999999999999999999
Q ss_pred EEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhh
Q 013700 83 VILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKA 161 (438)
Q Consensus 83 PVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~ 161 (438)
||++|++++.+|+.+|||+|++|++||.+|+|+||+|+|||+|+. +++++|++|+.+|++++++...
T Consensus 163 pvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~~------------ 230 (429)
T TIGR01890 163 VLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERLG------------ 230 (429)
T ss_pred EEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhcc------------
Confidence 999999999999999999999999999999999999999999875 5799999999999999986521
Q ss_pred hhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHH
Q 013700 162 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (438)
| || |.+||++|..|++
T Consensus 231 -------------------------------------------~-~~--------------------~~~kl~~a~~a~~ 246 (429)
T TIGR01890 231 -------------------------------------------S-ET--------------------TRRLLSAAVKACR 246 (429)
T ss_pred -------------------------------------------C-CC--------------------cHHHHHHHHHHHH
Confidence 1 21 5899999999999
Q ss_pred cCCCeEEeeccccCceeeeehhhcCCCcccccCCceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEE
Q 013700 242 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYV 321 (438)
Q Consensus 242 ~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V 321 (438)
.||+++||+|++.|++++.+||+++|.||+|..++|+.||+++.+|++.+.+++++.....+..++..+.+..+...+++
T Consensus 247 ~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V 326 (429)
T TIGR01890 247 GGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSI 326 (429)
T ss_pred cCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEE
Confidence 99999999999999999999999999999999999999999999999999999998877777677788888888888889
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEecee
Q 013700 322 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIE 401 (438)
Q Consensus 322 ~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~ 401 (438)
++.+++++||+.+.++.+...++|..++|+|+|||+|+|++||++++++|+++|++.+++.++.+.+||+|+||+.++..
T Consensus 327 ~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 327 IEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWFRERGFQTASVD 406 (429)
T ss_pred EEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHHHHCCCEECChh
Confidence 99999999999998776667889999999999999999999999999999999999998887778999999999999999
Q ss_pred ccchHhhhhhcCCCCceEEEEcc
Q 013700 402 MIPEERRKRINLSRNSKYYMKKL 424 (438)
Q Consensus 402 ~lp~~~~~~y~~~r~s~~~~k~l 424 (438)
++|..+++.|+++|++++|||++
T Consensus 407 ~l~~~~~~~~~~~r~~~~~~~~~ 429 (429)
T TIGR01890 407 ELPEARRKLYNYQRNSKILMKRL 429 (429)
T ss_pred hCCHHHHHHhcccccCceeeecC
Confidence 99999999999999999999975
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=2.9e-57 Score=471.55 Aligned_cols=341 Identities=47% Similarity=0.753 Sum_probs=306.1
Q ss_pred cccchhhhhHhhhCCCCCcccccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCce
Q 013700 3 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 82 (438)
Q Consensus 3 ~~g~~~~~~~a~ls~~~~l~~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~I 82 (438)
+.|.+...+++.|+.+++ ..++.+.++++.||+++.|+|.++.++.|||++|+|+.||++.|+.||++|+|
T Consensus 100 ~~g~v~~~l~~~l~~g~~---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~i 170 (441)
T PRK05279 100 AAGELRLDIEARLSMGLP---------NTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAI 170 (441)
T ss_pred HHHHHHHHHHHHHhccCC---------CCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCe
Confidence 346777888888876655 33444667999999999999998778899999999999999999999999999
Q ss_pred EEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhh
Q 013700 83 VILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKA 161 (438)
Q Consensus 83 PVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~ 161 (438)
||++|++.+++|+.+|||+|++|++||.+|+|++|+|+|||+|+. +++++|++++.+++++++..-.
T Consensus 171 pV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~~~------------ 238 (441)
T PRK05279 171 VLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEALE------------ 238 (441)
T ss_pred EEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhhhh------------
Confidence 999999999999999999999999999999999999999999874 5799999999999999875210
Q ss_pred hhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHH
Q 013700 162 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (438)
.|.| +| | |.+||++|..|++
T Consensus 239 --------------~~~~------------------------~g-g---------------------M~~Kv~~a~~~~~ 258 (441)
T PRK05279 239 --------------DGDY------------------------NS-G---------------------TARFLRAAVKACR 258 (441)
T ss_pred --------------cCCC------------------------Cc-c---------------------HHHHHHHHHHHHH
Confidence 0001 22 4 9999999999999
Q ss_pred cCCCeEEeeccccCceeeeehhhcCCCcccccCCceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEE
Q 013700 242 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYV 321 (438)
Q Consensus 242 ~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V 321 (438)
+||+++||+|++.|++|+.++|+.+|.||+|.++.|+.||+++.+|++.+.+++.+.....+..+++.+.+..+...+++
T Consensus 259 ~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~v 338 (441)
T PRK05279 259 GGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRRSREQLEREIDKFTV 338 (441)
T ss_pred cCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhcccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999988777676667788888877788899
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEecee
Q 013700 322 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIE 401 (438)
Q Consensus 322 ~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~ 401 (438)
++++++++||+.+.++.....++|..++|+|+|||+|+|++||++++++|++.|++.+++.++++.+||+|+||+..+..
T Consensus 339 a~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~~fY~k~GF~~~g~~ 418 (441)
T PRK05279 339 IERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTAHWFLERGFVPVDVD 418 (441)
T ss_pred EEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHCcCEECChh
Confidence 99999999999988665556789999999999999999999999999999999999998888888999999999999999
Q ss_pred ccchHhhhhhcCCCCceEEEEcc
Q 013700 402 MIPEERRKRINLSRNSKYYMKKL 424 (438)
Q Consensus 402 ~lp~~~~~~y~~~r~s~~~~k~l 424 (438)
.+|..++..|+++|+|++|+|++
T Consensus 419 ~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 419 DLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred hCcHHHHHhhCcccCceeeeecC
Confidence 99999999999999999999975
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=315.56 Aligned_cols=179 Identities=38% Similarity=0.607 Sum_probs=165.2
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~ 95 (438)
.+..|+ .|+++|.+ |+||||.|||+++|+|+++.+++||||||+|++||++.|+.+|++|+||||+|++++++|+
T Consensus 83 vNk~iva~l~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~ 158 (265)
T COG0548 83 VNKEIVARLSKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGE 158 (265)
T ss_pred HHHHHHHHHHHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCc
Confidence 667777 88888875 9999999999999999998888999999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHcCCCEEEEEecCccccC-CCc--ccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCC
Q 013700 96 VLNCNTYEVATACALAIEADKLICIIDGPILDE-SGH--LIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGH 172 (438)
Q Consensus 96 ~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~-~~~--~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
.+|+|+|++|+++|.+|+|+||+||||++|+.. .+. +|+.++.+|++++++++.
T Consensus 159 ~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~----------------------- 215 (265)
T COG0548 159 TLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI----------------------- 215 (265)
T ss_pred EEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC-----------------------
Confidence 999999999999999999999999999998743 343 999999999999998864
Q ss_pred CCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecc
Q 013700 173 SDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDG 252 (438)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g 252 (438)
+++ | |.+||++|+.||+.||+|+||+||
T Consensus 216 ------i~~-------------------------G---------------------Mi~Kv~~a~~A~~~Gv~~v~ii~g 243 (265)
T COG0548 216 ------ITG-------------------------G---------------------MIPKVEAALEALESGVRRVHIISG 243 (265)
T ss_pred ------ccC-------------------------c---------------------cHHHHHHHHHHHHhCCCeEEEecC
Confidence 222 4 899999999999999999999999
Q ss_pred ccCceeeeehhhcCCCcccccC
Q 013700 253 TIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 253 ~~~~~ll~el~~~~g~GT~i~~ 274 (438)
+.+++++.|||++.|.||+|.+
T Consensus 244 ~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 244 RVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred CCcchHHHHHhcCCCcceEecC
Confidence 9999999999999999999863
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3e-33 Score=274.20 Aligned_cols=187 Identities=50% Similarity=0.761 Sum_probs=166.5
Q ss_pred cccchhhhhHhhhCCCCCcccccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCce
Q 013700 3 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 82 (438)
Q Consensus 3 ~~g~~~~~~~a~ls~~~~l~~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~I 82 (438)
+.|.+...+++.|+.++. ..++.+.++++.|++++.++|.++.++.||||+|+|+.+|++.|+.||++|+|
T Consensus 93 ~~g~v~~~l~~~l~~~~~---------a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~i 163 (280)
T cd04237 93 AAGAVRLEIEALLSMGLP---------NSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSI 163 (280)
T ss_pred HHHHHHHHHHHHHHhhcc---------ccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCE
Confidence 346777777777766554 33344568999999999999988778899999999999999999999999999
Q ss_pred EEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhh
Q 013700 83 VILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKA 161 (438)
Q Consensus 83 PVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~ 161 (438)
||++|++.+++|+.+|+|+|++|++||.+|+|++|+|+||++|+. .++++|++++.+|+++++..+.
T Consensus 164 pv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~~------------ 231 (280)
T cd04237 164 VLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETGA------------ 231 (280)
T ss_pred EEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcCC------------
Confidence 999999999999999999999999999999999999999999886 4799999999999999987653
Q ss_pred hhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHH
Q 013700 162 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 241 (438)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (438)
+ -+| | |.+||++|..|++
T Consensus 232 -----------------~-----------------------~~g-g---------------------M~~Kv~~a~~a~~ 249 (280)
T cd04237 232 -----------------L-----------------------LTN-D---------------------TARLLQAAIEACR 249 (280)
T ss_pred -----------------C-----------------------CCC-C---------------------HHHHHHHHHHHHH
Confidence 0 022 4 9999999999999
Q ss_pred cCCCeEEeeccccCceeeeehhhcCCCcccc
Q 013700 242 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 242 ~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i 272 (438)
+||+++||+|++.|++++.|+|+++|.||+|
T Consensus 250 ~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 250 GGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred cCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 9999999999999999999999999999986
No 6
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.98 E-value=1.6e-32 Score=265.98 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=152.5
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~ 95 (438)
.+..|+ .|+++|.+ |+|+++. +++++|++ ..|+|++|+|++||++.|+.+|++|+|||++|++++++|+
T Consensus 99 ~n~~Lv~~L~~~G~~----A~gl~g~-~~~i~a~~-----~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~ 168 (271)
T cd04236 99 DCKTLVEALQANSAA----AHPLFSG-ESVLQAEE-----PEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGR 168 (271)
T ss_pred HHHHHHHHHHhCCCC----eeeecCc-cceEEEEE-----cccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCC
Confidence 445566 78888875 9999998 79999998 2689999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHcCCCEEEEEecCccc-cCCCcccccCCH-HHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCC
Q 013700 96 VLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHS 173 (438)
Q Consensus 96 ~~ninaD~~A~~lA~aL~A~~li~ltdv~g~-~~~~~~i~~l~~-~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
.+|+|+|++|++||.+|+|+||||+||++|+ +.++++|++|+. +|++.|+++|+
T Consensus 169 ~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~~~li~~g~------------------------ 224 (271)
T cd04236 169 SVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADLPSLSDAEW------------------------ 224 (271)
T ss_pred EEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHHHHHHhCCE------------------------
Confidence 9999999999999999999999999999987 467999999995 89999999876
Q ss_pred CCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccc
Q 013700 174 DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGT 253 (438)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~ 253 (438)
|+|||.+| .+|+++|+.++..|++ |||++
T Consensus 225 -----i~gGm~~k-------------------------------------------i~ki~~~l~~l~~g~s-v~I~~-- 253 (271)
T cd04236 225 -----LSETEQNR-------------------------------------------IQDIATLLNALPSMSS-AVITS-- 253 (271)
T ss_pred -----EcCCeeec-------------------------------------------hHHHHHHHHhcccCCe-EEEeC--
Confidence 55533221 7899999999999999 99998
Q ss_pred cCceeeeehhhcCCCcccc
Q 013700 254 IGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 254 ~~~~ll~el~~~~g~GT~i 272 (438)
+++++.|+||+.|.||++
T Consensus 254 -~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 254 -AETLLTELFSHKGSGTLF 271 (271)
T ss_pred -hHHHHHHHhccCCCCCcC
Confidence 788999999999999985
No 7
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.97 E-value=1.8e-31 Score=262.29 Aligned_cols=175 Identities=26% Similarity=0.462 Sum_probs=155.3
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~ 95 (438)
.+..|+ .|+++|.+ |+++++.|+++++|+++ +++|+|++|+|+++|++.|+.+|++|.|||++|++.+.+|+
T Consensus 104 ln~~lv~~L~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~ 176 (284)
T CHL00202 104 VNKDLVGSINANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQ 176 (284)
T ss_pred HHHHHHHHHHhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCc
Confidence 344445 55566655 99999999999999984 56799999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHcCCCEEEEEecCccccC----CCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccC
Q 013700 96 VLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFG 171 (438)
Q Consensus 96 ~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~----~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (438)
.+|+|+|++|++||.+|+|++|+|+||++|+.. ++++|++++.+|+++++..+.
T Consensus 177 ~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g~---------------------- 234 (284)
T CHL00202 177 TYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGI---------------------- 234 (284)
T ss_pred EEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcCC----------------------
Confidence 999999999999999999999999999998742 478999999999999875431
Q ss_pred CCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeec
Q 013700 172 HSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLD 251 (438)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~ 251 (438)
+ +| | |.+||++|..|+++|++++||+|
T Consensus 235 -------~------------------------tG-G---------------------M~~Kl~aa~~a~~~Gv~~v~I~~ 261 (284)
T CHL00202 235 -------I------------------------SG-G---------------------MIPKVNCCIRALAQGVEAAHIID 261 (284)
T ss_pred -------C------------------------CC-C---------------------HHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 33 4 99999999999999999999999
Q ss_pred cccCceeeeehhhcCCCccccc
Q 013700 252 GTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 252 g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|+.+++++.++|++++.||+|.
T Consensus 262 g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 262 GKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred CCCCChHHHHHhcCCCCceEEe
Confidence 9999998999999999999985
No 8
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.96 E-value=1.7e-29 Score=248.55 Aligned_cols=175 Identities=37% Similarity=0.591 Sum_probs=157.3
Q ss_pred Ccc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCCeee
Q 013700 20 PIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLN 98 (438)
Q Consensus 20 ~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~n 98 (438)
.|+ .|+++|.+ |+++++.|+++++++++ .+++|||++|+|+++|.+.|+.+|++|.|||++|++++++|+++|
T Consensus 107 ~i~~~L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~ 180 (283)
T PRK00942 107 ELVSLINKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYN 180 (283)
T ss_pred HHHHHHHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEE
Confidence 344 56666765 99999999999999997 677999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHcCCCEEEEEecCccccC-CCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCc
Q 013700 99 CNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIG 177 (438)
Q Consensus 99 inaD~~A~~lA~aL~A~~li~ltdv~g~~~-~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (438)
+|+|++|+.||.+|+|++|+|+||++|+.. ++++|++++.+|+++++..+.
T Consensus 181 l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~---------------------------- 232 (283)
T PRK00942 181 INADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIEDGV---------------------------- 232 (283)
T ss_pred ECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHHcCC----------------------------
Confidence 999999999999999999999999998854 599999999999999875431
Q ss_pred cccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCce
Q 013700 178 SVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGV 257 (438)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ 257 (438)
+ +| | |.+||++|..+++.|+.++||++++.+++
T Consensus 233 -~------------------------tg-g---------------------m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ 265 (283)
T PRK00942 233 -I------------------------TG-G---------------------MIPKVEAALDAARGGVRSVHIIDGRVPHA 265 (283)
T ss_pred -C------------------------CC-c---------------------hHHHHHHHHHHHHhCCCEEEEeCCCCCch
Confidence 0 23 4 99999999999999999999999999998
Q ss_pred eeeehhhcCCCcccccCC
Q 013700 258 LLLELFKRDGMGTMVASD 275 (438)
Q Consensus 258 ll~el~~~~g~GT~i~~d 275 (438)
+|.++|++++.||.|.++
T Consensus 266 ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 266 LLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHHHHhcCCCcceEEecC
Confidence 889999999999999764
No 9
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=3.2e-29 Score=243.13 Aligned_cols=170 Identities=35% Similarity=0.562 Sum_probs=154.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChH
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 102 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD 102 (438)
.|+++|.+ |+++++.|++++++++++ .+++||+|+|+|+++|++.|+.+|++|.|||++|++++++|+.+|+|+|
T Consensus 86 ~L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D 160 (256)
T cd04238 86 LLNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNAD 160 (256)
T ss_pred HHHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHH
Confidence 55666665 999999999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCccccC-CCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccc
Q 013700 103 EVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYS 181 (438)
Q Consensus 103 ~~A~~lA~aL~A~~li~ltdv~g~~~-~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (438)
++|+.+|.+|+|++|+|+|||+|+.. ++++|++++.+|+++++..+.
T Consensus 161 ~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~-------------------------------- 208 (256)
T cd04238 161 TAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDGV-------------------------------- 208 (256)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcCC--------------------------------
Confidence 99999999999999999999998864 599999999999988864321
Q ss_pred cCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeee
Q 013700 182 SQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLE 261 (438)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~e 261 (438)
.+| | |.+||++|..++++|+.++||++++.+++|+.+
T Consensus 209 ---------------------~~g-g---------------------m~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~ 245 (256)
T cd04238 209 ---------------------ISG-G---------------------MIPKVEAALEALEGGVRKVHIIDGRVPHSLLLE 245 (256)
T ss_pred ---------------------CCC-C---------------------hHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHH
Confidence 023 3 999999999999999999999999999999999
Q ss_pred hhhcCCCcccc
Q 013700 262 LFKRDGMGTMV 272 (438)
Q Consensus 262 l~~~~g~GT~i 272 (438)
++++++.||.|
T Consensus 246 l~~~~~~GT~i 256 (256)
T cd04238 246 LFTDEGIGTMI 256 (256)
T ss_pred HhcCCCCCCCC
Confidence 98878899986
No 10
>PLN02512 acetylglutamate kinase
Probab=99.96 E-value=1.6e-29 Score=251.07 Aligned_cols=176 Identities=28% Similarity=0.486 Sum_probs=157.3
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~ 95 (438)
.+..|+ .|+++|.+ |++++|.|++++++++++ +++|++++|+|+++|++.|+.+|+.|.|||++|++++++|+
T Consensus 128 ln~~lv~~L~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~ 201 (309)
T PLN02512 128 VNKSLVSLINKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQ 201 (309)
T ss_pred HHHHHHHHHHHcCCC----eEEeehhhCCEEEEEEcC--cCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCC
Confidence 445566 77777876 999999999999999963 45799999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHcCCCEEEEEecCcccc----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccC
Q 013700 96 VLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFG 171 (438)
Q Consensus 96 ~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (438)
.+|+|+|++|+.||.+|+|++|+|+|||+|+. +++++|++++.+|+++++..+.
T Consensus 202 ~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~~---------------------- 259 (309)
T PLN02512 202 AYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGK---------------------- 259 (309)
T ss_pred EeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCCC----------------------
Confidence 99999999999999999999999999999874 3589999999999999875432
Q ss_pred CCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeec
Q 013700 172 HSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLD 251 (438)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~ 251 (438)
+ +| | |.+||++|..+++.|++++||++
T Consensus 260 -------v------------------------tG-G---------------------M~~Kl~aa~~a~~~Gv~~v~I~~ 286 (309)
T PLN02512 260 -------I------------------------AG-G---------------------MIPKVECCVRSLAQGVKTAHIID 286 (309)
T ss_pred -------C------------------------CC-c---------------------HHHHHHHHHHHHHcCCCEEEEec
Confidence 1 33 4 99999999999999999999999
Q ss_pred cccCceeeeehhhcCCCccccc
Q 013700 252 GTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 252 g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|+.+++++.++|++++.||.|.
T Consensus 287 g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 287 GRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred CCCCChHHHHHhcCCCCeeEEe
Confidence 9999988889999999999985
No 11
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.96 E-value=4.9e-29 Score=244.75 Aligned_cols=177 Identities=33% Similarity=0.534 Sum_probs=158.3
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEeccc---ccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSS 92 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~---~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~ 92 (438)
.+..|+ .|+++|.+ |+++++.|+++++++++++ ++++||+++|+|+++|++.|+.+|+.|.|||++|++.++
T Consensus 95 ln~~l~~~L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~ 170 (279)
T cd04250 95 VNKEIVSLINRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGE 170 (279)
T ss_pred hHHHHHHHHHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCC
Confidence 334455 67777775 9999999999999999885 578999999999999999999999999999999999999
Q ss_pred CCCeeecChHHHHHHHHHHcCCCEEEEEecCccccC----CCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhccccc
Q 013700 93 SGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDIT 168 (438)
Q Consensus 93 ~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~----~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 168 (438)
.|+.+|+|+|.+|+.+|.+|+|++|+|+|||+|+.. ++++|++++.+|++++...+.
T Consensus 171 ~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~~------------------- 231 (279)
T cd04250 171 DGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGI------------------- 231 (279)
T ss_pred CCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcCC-------------------
Confidence 999999999999999999999999999999998842 389999999999988865421
Q ss_pred ccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEE
Q 013700 169 CFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVH 248 (438)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 248 (438)
.+| | |.+||++|..|+++|++++|
T Consensus 232 ----------------------------------~tG-g---------------------m~~Kl~~a~~a~~~g~~~v~ 255 (279)
T cd04250 232 ----------------------------------ISG-G---------------------MIPKVEACIEALEGGVKAAH 255 (279)
T ss_pred ----------------------------------CCC-c---------------------hHHHHHHHHHHHHhCCCEEE
Confidence 033 4 99999999999999999999
Q ss_pred eeccccCceeeeehhhcCCCcccc
Q 013700 249 LLDGTIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 249 i~~g~~~~~ll~el~~~~g~GT~i 272 (438)
|+|++.|++++.++|++++.||.|
T Consensus 256 I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 256 IIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred EeCCCCCchHHHHHhcCCCCccCC
Confidence 999999999999999999999986
No 12
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.96 E-value=1.4e-28 Score=237.32 Aligned_cols=169 Identities=24% Similarity=0.335 Sum_probs=144.6
Q ss_pred CCCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCC
Q 013700 16 SPGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSG 94 (438)
Q Consensus 16 s~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g 94 (438)
..+..|+ .|+++|.+ |+++++ ++++++| .++.||||+|+|+++|++.|+.+|+.|+|||++|++++++|
T Consensus 75 ~vn~~iv~~l~~~g~~----a~~l~~---~~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g 144 (248)
T cd04252 75 EENLKLVEALERNGAR----ARPITS---GVFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSG 144 (248)
T ss_pred HHHHHHHHHHHhCCCC----cccccC---ceEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCC
Confidence 3556666 77777775 999884 4778888 46789999999999999999999999999999999999999
Q ss_pred CeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCH-HHHHHHHHhhhhhhhHHHhHhhhhhcccccccCC
Q 013700 95 EVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGH 172 (438)
Q Consensus 95 ~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~-~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
+.+|+|+|++|+++|.+|+|+||+|+||++|+. .++++|++++. +++++++..+.
T Consensus 145 ~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~~----------------------- 201 (248)
T cd04252 145 QLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQPW----------------------- 201 (248)
T ss_pred CEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcCC-----------------------
Confidence 999999999999999999999999999999885 46999999997 47778875432
Q ss_pred CCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHc--CCCeEEee
Q 013700 173 SDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQRVHLL 250 (438)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gv~~~~i~ 250 (438)
+ +| | |.+||++|..+.+. ++..+||+
T Consensus 202 ------v------------------------tg-G---------------------M~~Kl~~~~~~~~~~~~~~~v~i~ 229 (248)
T cd04252 202 ------V------------------------KY-G---------------------TKLKIKEIKELLDTLPRSSSVSIT 229 (248)
T ss_pred ------c------------------------CC-c---------------------hHHHHHHHHHHHHhCCCceEEEEE
Confidence 1 33 4 89999988888776 56678888
Q ss_pred ccccCceeeeehhhcCCCcccc
Q 013700 251 DGTIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 251 ~g~~~~~ll~el~~~~g~GT~i 272 (438)
+ +++++.|||+++|.||+|
T Consensus 230 ~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 230 S---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred C---CchHHHHHhcCCCCCccC
Confidence 7 688999999999999986
No 13
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=2e-28 Score=237.52 Aligned_cols=172 Identities=32% Similarity=0.422 Sum_probs=148.9
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecc--------cccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKG--------VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 87 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~--------~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~ 87 (438)
.+..|+ .|+++|.+ |+++++.|++++++++.. .....|+||+|+|+++|++.|+.+|++|+|||++|
T Consensus 77 ln~~iv~~L~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~ 152 (257)
T cd04251 77 INKKIVARLHSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSP 152 (257)
T ss_pred HHHHHHHHHHhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeC
Confidence 445566 67777775 999999999999999862 22336899999999999999999999999999999
Q ss_pred cccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCccccCCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccc
Q 013700 88 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 167 (438)
Q Consensus 88 i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (438)
++++.+|+.+|+|+|.+|+++|.+|+|++|+|+||++|+..++++|++++.+|+++++.. .
T Consensus 153 ~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~-~------------------ 213 (257)
T cd04251 153 VAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK-A------------------ 213 (257)
T ss_pred cEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh-C------------------
Confidence 999999999999999999999999999999999999999878999999999999888622 1
Q ss_pred cccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeE
Q 013700 168 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 247 (438)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 247 (438)
+| | |.+||++|..|+++|++++
T Consensus 214 ------------------------------------~g-g---------------------m~~Kl~aa~~a~~~gv~~v 235 (257)
T cd04251 214 ------------------------------------GG-G---------------------MKRKLLAAAEAVEGGVREV 235 (257)
T ss_pred ------------------------------------CC-c---------------------hHHHHHHHHHHHHcCCCEE
Confidence 33 4 9999999999999999999
Q ss_pred EeeccccCceeeeehhhcCCCcccc
Q 013700 248 HLLDGTIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 248 ~i~~g~~~~~ll~el~~~~g~GT~i 272 (438)
||++|+.|+.+. .++. |.||.|
T Consensus 236 ~i~~g~~~~~l~-~~l~--g~gT~i 257 (257)
T cd04251 236 VIGDARADSPIS-SALN--GGGTVI 257 (257)
T ss_pred EEecCCCccHHH-HHHc--CCCcCC
Confidence 999999998654 4332 468875
No 14
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=1.1e-27 Score=231.84 Aligned_cols=171 Identities=25% Similarity=0.346 Sum_probs=151.5
Q ss_pred CCCCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCC
Q 013700 17 PGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95 (438)
Q Consensus 17 ~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~ 95 (438)
.+..++ .+.++|.+ |+++++.|+++++++|++ .|+|++|+|+++|.+.|+.+|+.|+|||++|++++++|+
T Consensus 80 ~n~~lv~~l~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~ 151 (252)
T cd04249 80 ANKQLMAQAIKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQ 151 (252)
T ss_pred ccHHHHHHHHhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCC
Confidence 444556 66667765 999999999999999975 689999999999999999999999999999999999999
Q ss_pred eeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCC
Q 013700 96 VLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 174 (438)
Q Consensus 96 ~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (438)
++|+|+|.+|+++|.+|+|+ ++|+|||+|+. .++++|++++.+|+++++..+.
T Consensus 152 ~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~------------------------- 205 (252)
T cd04249 152 LMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV------------------------- 205 (252)
T ss_pred EeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-------------------------
Confidence 99999999999999999999 78999999885 5789999999999999875432
Q ss_pred CCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 013700 175 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 254 (438)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~ 254 (438)
+ +| | |.+|+.+|..+++.|+.++||++++.
T Consensus 206 ----~------------------------~g-G---------------------m~~kl~~a~~~~~~~~~~v~I~~g~~ 235 (252)
T cd04249 206 ----I------------------------TD-G---------------------MIVKVNAALDAAQSLRRGIDIASWQY 235 (252)
T ss_pred ----C------------------------cC-C---------------------cHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 1 33 4 99999999999999999999999998
Q ss_pred CceeeeehhhcCCCcccc
Q 013700 255 GGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 255 ~~~ll~el~~~~g~GT~i 272 (438)
++. +.++|++++.||+|
T Consensus 236 ~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 236 PEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred ccH-HHHHHcCCCCCcCC
Confidence 885 67899999999986
No 15
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.95 E-value=1.2e-27 Score=233.43 Aligned_cols=175 Identities=29% Similarity=0.412 Sum_probs=151.4
Q ss_pred CCCCCcc-cccccCCCCCcceeeeeeecccEEEEEecc----cccC----CCcceeeeEeeeCHHHHHHHhcCCceEEEc
Q 013700 16 SPGPPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKG----VVDG----VDYGATGEVKKVDVTRMRERLDGGCLVILS 86 (438)
Q Consensus 16 s~~~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~----~~~~----~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~ 86 (438)
..+..|+ .|+++|.+ |+++++.|.+++++++.. +.+| .|+||+|+|+++|++.|+.+|++|+|||++
T Consensus 80 ~ln~~lv~~L~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~ 155 (268)
T PRK14058 80 LINKQLVERLQSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVA 155 (268)
T ss_pred HHHHHHHHHHHhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEe
Confidence 3555666 77888876 999999999999998753 3344 699999999999999999999999999999
Q ss_pred CcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhh
Q 013700 87 NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAV 162 (438)
Q Consensus 87 ~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~ 162 (438)
|++++.+|+.+|+|+|.+|+.+|.+|+|++|+|+|||+|+. +++++|++++.+|++++....
T Consensus 156 ~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~-------------- 221 (268)
T PRK14058 156 PPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKAA-------------- 221 (268)
T ss_pred CceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhcc--------------
Confidence 99988889999999999999999999999999999999884 248899999999888875321
Q ss_pred hcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHc
Q 013700 163 AEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR 242 (438)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (438)
+| | |.+||++|..|+++
T Consensus 222 -----------------------------------------tG-g---------------------M~~Kl~aa~~a~~~ 238 (268)
T PRK14058 222 -----------------------------------------GG-G---------------------MKKKVLMAAEAVEG 238 (268)
T ss_pred -----------------------------------------CC-c---------------------cHHHHHHHHHHHHc
Confidence 33 4 99999999999999
Q ss_pred CCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 243 GVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 243 gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
|++++||+|++.++.++.++ +|.||.|..
T Consensus 239 Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 239 GVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred CCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 99999999999999887766 456999864
No 16
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.95 E-value=8.6e-28 Score=237.51 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=152.8
Q ss_pred ccccchhhhhHhhhCCCCCcccccccCCCC---CcceeeeeeecccEE-EEEecccc-----------cCCCcceeee--
Q 013700 2 EAAGGIRMMIEAKLSPGPPICNIRRHGDSS---RWHEVGVSVASGNFL-AAKRKGVV-----------DGVDYGATGE-- 64 (438)
Q Consensus 2 ~~~g~~~~~~~a~ls~~~~l~~l~~~g~~~---~~~avgl~g~~g~~i-~a~~~~~~-----------~~~d~g~vG~-- 64 (438)
++.|.++.+|++.|+..+. ++|... -+..+++++.|++|+ .++|.|++ +++|++|+|+
T Consensus 84 ~~~g~i~~~i~~~L~~~l~-----~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g 158 (316)
T PRK12352 84 DTQGGIGYLIQQALNNRLA-----RHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAG 158 (316)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCC
Confidence 3568899999999987654 444210 011489999999999 66777765 5679999777
Q ss_pred ------------EeeeCHHHHHHHhcCCceEEEc-----CcccCCCCCe----eecChHHHHHHHHHHcCCCEEEEEecC
Q 013700 65 ------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLICIIDG 123 (438)
Q Consensus 65 ------------v~~v~~~~i~~ll~~g~IPVi~-----~i~~~~~g~~----~ninaD~~A~~lA~aL~A~~li~ltdv 123 (438)
|+.||++.|+.||++|+|||++ |++.+..|+. +|||+|.+|+++|.+|+||+|+||||+
T Consensus 159 ~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV 238 (316)
T PRK12352 159 RGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGV 238 (316)
T ss_pred CCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCc
Confidence 9999999999999999997777 8887766664 559999999999999999999999999
Q ss_pred cccc-----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccC
Q 013700 124 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 198 (438)
Q Consensus 124 ~g~~-----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
+|+. +++++|++++.+|+++++++|. +.
T Consensus 239 ~GV~~d~~~~~~~li~~lt~~e~~~li~~g~-----------------------------i~------------------ 271 (316)
T PRK12352 239 EKVCIHFGKPQQQALDRVDIATMTRYMQEGH-----------------------------FP------------------ 271 (316)
T ss_pred hhhccCCCCCCcccccccCHHHHHHHHhcCC-----------------------------cC------------------
Confidence 9874 3578999999999999987653 10
Q ss_pred CCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 199 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 199 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
.| | |.+||++|+.||+.|++|+||++ ++. +.++++++ .||+|.+
T Consensus 272 -----~G-g---------------------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 272 -----PG-S---------------------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred -----CC-C---------------------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 12 3 99999999999999999999997 444 45777776 7899864
No 17
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=2.7e-28 Score=245.97 Aligned_cols=334 Identities=42% Similarity=0.540 Sum_probs=266.5
Q ss_pred CCCcc-cccccCCCCCcceeeeeee--cccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCC
Q 013700 18 GPPIC-NIRRHGDSSRWHEVGVSVA--SGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSG 94 (438)
Q Consensus 18 ~~~l~-~l~~~g~~~~~~avgl~g~--~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g 94 (438)
++.++ .|+++|.. +++.++. .+++++|++.+++|+.+||++|+|.+||.+.|+.+++.|.+|+++.++.+.+|
T Consensus 175 n~~lv~nL~~~g~~----ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSG 250 (520)
T KOG2436|consen 175 NLNLVINLSQLGTR----ARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASG 250 (520)
T ss_pred hhHHHHHHHHhhce----eccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCcc
Confidence 34466 89999975 6666655 37799999999999999999999999999999999999999999999999999
Q ss_pred CeeecChHHHHHHHHHHcCCCEEEEEec-CccccCCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCC
Q 013700 95 EVLNCNTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHS 173 (438)
Q Consensus 95 ~~~ninaD~~A~~lA~aL~A~~li~ltd-v~g~~~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
+++|||+|++|.++|.+|+|+|+++++| .++++++|+.++.++.++...++...+.|.++++..++++.+...+-++-.
T Consensus 251 qvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~ 330 (520)
T KOG2436|consen 251 QVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDGIDSSLPRP 330 (520)
T ss_pred ceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHhhhhhhhhhcccccccchhhhhheeeccCcC
Confidence 9999999999999999999999999999 557889999999999998888888878888899999999988777755522
Q ss_pred CC-Cccccc----cCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEE
Q 013700 174 DS-IGSVYS----SQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVH 248 (438)
Q Consensus 174 ~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 248 (438)
-+ ++.+.. .-..-+..+ +..|+.+|.+++.++++|+..++++.+.-+++.|+.+.+.++-+|-.-|..+++++|
T Consensus 331 ~s~~i~~~t~~n~~~~~~te~G-~~t~~~~gv~~~k~~sl~~~~~~~al~~~~~~~rln~~lse~i~a~~~~~~~i~~~~ 409 (520)
T KOG2436|consen 331 SSYNIAITTQQNLIKELFTEKG-AGTLISGGVGINKGNSLISQSFKRALDLEEYIDRLNGSLSELIAAGDYCGGAIKTYE 409 (520)
T ss_pred CCCCcceeecccccceeeccCC-CCccccCceeeecCcccccchhhhhcchHHHHHHhhchHHHHHHHHHHhccceEEEE
Confidence 21 221111 111111112 777899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCceeeeehhhcCCCcccccCCceeEEEECCccCHHHHHHHHHHHHHcCcC-CcCCHHHHHhhcCcEEEEEECCE
Q 013700 249 LLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALDSFYVVEREGQ 327 (438)
Q Consensus 249 i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~at~~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~~~~~~V~~~dg~ 327 (438)
..|+....-++++.|...+.+|.. .+-+-.++.+..+|+|+|....++......+ ..++.+.+. ....+++.+.+++
T Consensus 410 ~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~~~~~w~f~rs~g~L~-~~~~~lfwyg~~~ 487 (520)
T KOG2436|consen 410 LSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLNEVNKWYFRRSEGSLR-ALDFKLFWYGEGQ 487 (520)
T ss_pred ccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeecccccccceEEEeccHHHHh-ccCcEEEEecCcH
Confidence 999988887889999888888887 3444445566667777666555554433333 334444443 4455666677888
Q ss_pred EEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHH
Q 013700 328 IIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKL 363 (438)
Q Consensus 328 iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~L 363 (438)
+..|+.+.++. ++..+.|.++.|+++-+.++
T Consensus 488 i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~ 518 (520)
T KOG2436|consen 488 IIKCAALFQFF-----EVAAMSVASDIRPSWQNDKL 518 (520)
T ss_pred HHHHHHhhhhh-----HHHHhhhccccCccccCCCC
Confidence 99998887654 56677888888887766554
No 18
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.93 E-value=2.1e-25 Score=227.53 Aligned_cols=229 Identities=21% Similarity=0.269 Sum_probs=178.9
Q ss_pred HHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCH-HHHHHHHHhhhh
Q 013700 73 MRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVK 150 (438)
Q Consensus 73 i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~-~e~~~l~~~g~~ 150 (438)
|+.+|+.|.|||++|++.+++|+.+|||+|++|++||.+|+|+||||+||++|+. .+|++|++|+. ++++.+++.+.
T Consensus 122 I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~~~l~~~~~- 200 (398)
T PRK04531 122 VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEYDHLMQQPW- 200 (398)
T ss_pred HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHHHHHHhcCC-
Confidence 8899999999999999999999999999999999999999999999999999885 57999999997 57787765432
Q ss_pred hhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccch
Q 013700 151 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 230 (438)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (438)
+ +| | |.
T Consensus 201 ----------------------------v------------------------tg-G---------------------M~ 206 (398)
T PRK04531 201 ----------------------------I------------------------NG-G---------------------MK 206 (398)
T ss_pred ----------------------------C------------------------Cc-c---------------------HH
Confidence 1 23 4 99
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCcee-EEEECCccCHHHHHHHHHHHHHcCcCCcCCH
Q 013700 231 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE-GTRTAKVTDLSGIKQIIQPLVESGALVRRTD 309 (438)
Q Consensus 231 ~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~-~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~ 309 (438)
+||++|..|++ +++++|+++++.+++|+.||||++|.||+|.+...+ ....+..=|.+.+.+++...+.... .
T Consensus 207 ~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~~sf~r~~-----~ 280 (398)
T PRK04531 207 LKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIESSFGRTL-----K 280 (398)
T ss_pred HHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHhhhcccch-----H
Confidence 99999999995 577899999999999999999999999999986543 3334455588888888754443321 1
Q ss_pred HHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHH
Q 013700 310 EELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRT 386 (438)
Q Consensus 310 e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a 386 (438)
+++... ...+-++.++..=|++.+.+ ....+++..|+|.+..|+.|++..+++.+.+.. +.+++.+ ++.
T Consensus 281 ~~y~~~-~~~~~~y~~~~y~~~Aiv~~--~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~Wrsr~~n~~ 352 (398)
T PRK04531 281 PDYFDT-TQLLRAYVSENYRAAAILTE--TGGGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLFWRSRHNNTI 352 (398)
T ss_pred HHHhcc-CCceEEEEeCCCcEEEEEec--CCCceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceEEEcCCCCCc
Confidence 233332 34444555666666666652 356899999999999999999999999888665 3455554 344
Q ss_pred HHHH
Q 013700 387 ADWF 390 (438)
Q Consensus 387 ~~fY 390 (438)
.+||
T Consensus 353 ~~Wy 356 (398)
T PRK04531 353 NKFY 356 (398)
T ss_pred ccee
Confidence 4555
No 19
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.93 E-value=3.8e-25 Score=211.41 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=109.6
Q ss_pred CCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCCee
Q 013700 19 PPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVL 97 (438)
Q Consensus 19 ~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ 97 (438)
..++ .|+++|.+ |+++++.|+++++++++ ++.|++++|+++++|++.|+.+|++|+|||++|++++.+|+++
T Consensus 80 ~~i~~~L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~ 152 (231)
T TIGR00761 80 KELVALLNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQAL 152 (231)
T ss_pred HHHHHHHHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEE
Confidence 3444 66667765 99999999999999985 4578999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHHHcCCCEEEEEecCcccc-CC-CcccccCCHHHHHHHHHhh
Q 013700 98 NCNTYEVATACALAIEADKLICIIDGPILD-ES-GHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 98 ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~-~~~i~~l~~~e~~~l~~~g 148 (438)
|+|+|.+|+.||.+|+|++|+|+||++|+. .+ +++|++++.+|+++++..+
T Consensus 153 ~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~~~ 205 (231)
T TIGR00761 153 NVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIEQG 205 (231)
T ss_pred EeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHHcC
Confidence 999999999999999999999999999874 33 4599999999999987543
No 20
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=183.96 Aligned_cols=147 Identities=39% Similarity=0.738 Sum_probs=139.5
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 357 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgq 357 (438)
++||.++.+|++.|.+|+.++...+.+.+++++.++..+..|++++++|+++||++++++.+.+.+++.+++|+|+||++
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCC
Confidence 36999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHhhhhhcCC-CCceEEEEcc
Q 013700 358 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS-RNSKYYMKKL 424 (438)
Q Consensus 358 GiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~-r~s~~~~k~l 424 (438)
|+|..|+++++..|++.|++.+|+.|+.+..||+++||+.+..+.+|..++..|+++ +.++..+..+
T Consensus 81 G~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~~~~~~ 148 (153)
T COG1246 81 GRGERLLERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYNFCERRSKCLAFDL 148 (153)
T ss_pred CcHHHHHHHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 7776655443
No 21
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.86 E-value=9.4e-22 Score=190.39 Aligned_cols=164 Identities=17% Similarity=0.239 Sum_probs=133.3
Q ss_pred CCcc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCe
Q 013700 19 PPIC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEV 96 (438)
Q Consensus 19 ~~l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~ 96 (438)
..++ .|+++|.+ ++++++.+.. .++ +|++..++.+.|+.+|+.|.|||+++. +.+++|+.
T Consensus 83 ~~~~~~l~~~g~~----a~~l~~~~~~--~~~------------~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~ 144 (252)
T cd04241 83 SIVVDALLEAGVP----AVSVPPSSFF--VTE------------NGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGI 144 (252)
T ss_pred HHHHHHHHHCCCC----eEEEChHHeE--Eec------------CCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCe
Confidence 3445 66777765 9999998842 221 689999999999999999999999874 67888899
Q ss_pred eecChHHHHHHHHHHcCCCEEEEEecCccccC----CCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCC
Q 013700 97 LNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGH 172 (438)
Q Consensus 97 ~ninaD~~A~~lA~aL~A~~li~ltdv~g~~~----~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
+|+|+|++|+.+|.+|+|++|+|+|||+|+.. ++++|++++.+++++++....+
T Consensus 145 ~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~~---------------------- 202 (252)
T cd04241 145 TILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALGS---------------------- 202 (252)
T ss_pred EEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcCc----------------------
Confidence 99999999999999999999999999998843 5999999999888888653100
Q ss_pred CCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecc
Q 013700 173 SDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDG 252 (438)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g 252 (438)
++...+| | |.+||++|..|+++|++ +||+++
T Consensus 203 --------------------------~~~~~tG-G---------------------m~~Kl~aa~~a~~~Gv~-v~I~~g 233 (252)
T cd04241 203 --------------------------AGTDVTG-G---------------------MAGKIEELLELARRGIE-VYIFNG 233 (252)
T ss_pred --------------------------CCccccC-C---------------------HHHHHHHHHHHHhcCCe-EEEEeC
Confidence 0000133 3 99999999999999997 999999
Q ss_pred ccCceeeeehhhcCCCcccc
Q 013700 253 TIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 253 ~~~~~ll~el~~~~g~GT~i 272 (438)
+.++. +.+++.++..||.|
T Consensus 234 ~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 234 DKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred CCHHH-HHHHHcCCCCceEC
Confidence 98876 56777788889975
No 22
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.82 E-value=5e-20 Score=177.33 Aligned_cols=155 Identities=28% Similarity=0.417 Sum_probs=135.5
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcccCC---CCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSS---SGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~---~g~~~ni 99 (438)
.|+++|.+ ++.+++.+..+... +++++|.+..++.+.|+.+|+.|.|||+++++... .++..|+
T Consensus 84 ~l~~~gi~----a~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~ 150 (248)
T cd02115 84 ALEQHGIK----AVPLDLTQAGFASP---------NQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRG 150 (248)
T ss_pred HHHhCCCC----eEEEchHHcCeEeC---------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCC
Confidence 67777775 99999888776653 56889999999999999999999999999987665 7888999
Q ss_pred ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCC
Q 013700 100 NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGH 172 (438)
Q Consensus 100 naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
++|.+|+.+|.+|+|++|+|+|||+|+. +++++|++|+.+|++++...|
T Consensus 151 ~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g------------------------ 206 (248)
T cd02115 151 GSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAG------------------------ 206 (248)
T ss_pred CHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcC------------------------
Confidence 9999999999999999999999999873 238999999999998886432
Q ss_pred CCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecc
Q 013700 173 SDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDG 252 (438)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g 252 (438)
+ |..|++++..++++|+ +++|+++
T Consensus 207 ----------------------------------~---------------------~~~k~~a~~~~~~~~~-~v~I~~~ 230 (248)
T cd02115 207 ----------------------------------A---------------------MVLKPKAADPAARAGI-PVRIANT 230 (248)
T ss_pred ----------------------------------C---------------------CccCHHHHHHHHHcCC-cEEEEeC
Confidence 2 7889999999999995 6999999
Q ss_pred ccCceeeeehhhcCCCcccc
Q 013700 253 TIGGVLLLELFKRDGMGTMV 272 (438)
Q Consensus 253 ~~~~~ll~el~~~~g~GT~i 272 (438)
..++.+ ++|++++.||.|
T Consensus 231 ~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 231 ENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred CCcccc--cccCCCCCCCCC
Confidence 999876 999999999986
No 23
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.77 E-value=1.8e-18 Score=172.04 Aligned_cols=186 Identities=20% Similarity=0.242 Sum_probs=129.0
Q ss_pred ccchhhhhHhhhCCCCCcccccccCCCCCc-ceeeeeeeccc---E-EEEEecccc------------cCCCcce-eee-
Q 013700 4 AGGIRMMIEAKLSPGPPICNIRRHGDSSRW-HEVGVSVASGN---F-LAAKRKGVV------------DGVDYGA-TGE- 64 (438)
Q Consensus 4 ~g~~~~~~~a~ls~~~~l~~l~~~g~~~~~-~avgl~g~~g~---~-i~a~~~~~~------------~~~d~g~-vG~- 64 (438)
.|.+++.+++.++..+. .+|....+ ..+.---.+++ + ..++|.|++ +|.||.+ .|+
T Consensus 85 qg~l~~~l~~~~~~~l~-----~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (314)
T PRK12353 85 QGYIGYHLQNALRNELL-----KRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRG 159 (314)
T ss_pred hHHHHHHHHHHHHHHHH-----hcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCce
Confidence 56777888877776544 33322111 11111111444 4 556666655 5667766 454
Q ss_pred Eee----------eCHHHHHHHhcCCceEEEcCccc----CCCCCee----ecChHHHHHHHHHHcCCCEEEEEecCccc
Q 013700 65 VKK----------VDVTRMRERLDGGCLVILSNLGY----SSSGEVL----NCNTYEVATACALAIEADKLICIIDGPIL 126 (438)
Q Consensus 65 v~~----------v~~~~i~~ll~~g~IPVi~~i~~----~~~g~~~----ninaD~~A~~lA~aL~A~~li~ltdv~g~ 126 (438)
.++ ||.+.|+.||+.|+|||++|.+. ..++.++ |+|+|++|+.+|.+|+||+|+|+|||+|+
T Consensus 160 ~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGV 239 (314)
T PRK12353 160 YRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKV 239 (314)
T ss_pred eEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 444 79999999999999999996532 2233333 59999999999999999999999999987
Q ss_pred c-----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCc
Q 013700 127 D-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVG 201 (438)
Q Consensus 127 ~-----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
. +++++|++++.+++++++..+.
T Consensus 240 y~~~~~~~a~~i~~i~~~e~~~~~~~~~---------------------------------------------------- 267 (314)
T PRK12353 240 YINFGKPNQKKLDEVTVSEAEKYIEEGQ---------------------------------------------------- 267 (314)
T ss_pred cCCCCCCCCeECcCcCHHHHHHHHhcCC----------------------------------------------------
Confidence 4 3579999999988888865432
Q ss_pred cCCCCCCccccccccccccchhhhcccchHHHHHHHHHH-HcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 202 FDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 202 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
+.+| | |.+||++|..++ +.+...++|++ ++.+ ..++.++ .||.|.
T Consensus 268 ~~tG-G---------------------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~i-~~~l~g~-~GT~i~ 313 (314)
T PRK12353 268 FAPG-S---------------------MLPKVEAAISFVESRPGRKAIITS---LEKA-KEALEGK-AGTVIV 313 (314)
T ss_pred cCCC-C---------------------cHHHHHHHHHHHHHcCCCEEEECC---chHH-HHHhCCC-CCeEec
Confidence 1133 3 999999999999 65555699998 3433 3555555 799885
No 24
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.76 E-value=6.4e-18 Score=162.87 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=103.1
Q ss_pred cc-cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeee
Q 013700 21 IC-NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLN 98 (438)
Q Consensus 21 l~-~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~n 98 (438)
++ .|+++|.+ |++|++.|.+++++...+ .|++..+|++.|+.+|+.|.|||++++ +.+.+|+++|
T Consensus 84 ~~~~l~~~Gi~----a~~l~~~~~~lit~~~~~---------~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~ 150 (244)
T cd04260 84 LTSTLRAQGLK----AVALTGAQAGILTDDNYS---------NAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTT 150 (244)
T ss_pred HHHHHHhCCCC----eEEechHHcCEEecCCCC---------ceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEE
Confidence 44 78888886 999999999999977542 688999999999999999999999997 8899999999
Q ss_pred c---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 99 C---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 99 i---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
+ ++|++|+.||.+|+|++|+|+|||+|++ +++++|++|+.+|+++++..|
T Consensus 151 l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g 210 (244)
T cd04260 151 LGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQG 210 (244)
T ss_pred eCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcC
Confidence 9 5999999999999999999999999884 358999999999999997654
No 25
>PRK12686 carbamate kinase; Reviewed
Probab=99.75 E-value=1.9e-18 Score=170.23 Aligned_cols=158 Identities=19% Similarity=0.171 Sum_probs=118.9
Q ss_pred eeeeeeecccEEEEEecccccCCC--cceeeeEee------eCHHHHHHHhcCCceEEEc-----CcccCCCCCee----
Q 013700 35 EVGVSVASGNFLAAKRKGVVDGVD--YGATGEVKK------VDVTRMRERLDGGCLVILS-----NLGYSSSGEVL---- 97 (438)
Q Consensus 35 avgl~g~~g~~i~a~~~~~~~~~d--~g~vG~v~~------v~~~~i~~ll~~g~IPVi~-----~i~~~~~g~~~---- 97 (438)
+..+++.++.. .+++++-.-..| .||.+.|.+ ||.+.|+.||++|+|||.+ |+..+ ++.++
T Consensus 131 g~~~~~~~a~~-~~~~~g~~~~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~-~~~~~gv~a 208 (312)
T PRK12686 131 GPFYTEEEAKQ-QAEQPGSTFKEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRD-DNTLKGVEA 208 (312)
T ss_pred cCccCHHHHHH-HHHHcCCcccccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEec-CCcEEeeec
Confidence 55678888877 333333111233 399999999 9999999999999999876 55443 45454
Q ss_pred ecChHHHHHHHHHHcCCCEEEEEecCcccc-----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCC
Q 013700 98 NCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGH 172 (438)
Q Consensus 98 ninaD~~A~~lA~aL~A~~li~ltdv~g~~-----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
++|+|.+|+.||.+|+||+|+|||||+|+. +++++|++++.+|++.++.++.
T Consensus 209 vid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~----------------------- 265 (312)
T PRK12686 209 VIDKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQ----------------------- 265 (312)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEeCchhhccCCCCCCCeECCccCHHHHHHHhhCCC-----------------------
Confidence 569999999999999999999999999874 4579999999999999976542
Q ss_pred CCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCC-CeEEeec
Q 013700 173 SDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV-QRVHLLD 251 (438)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv-~~~~i~~ 251 (438)
+.+| | |.+||++|..+++.|+ .+++|++
T Consensus 266 -----------------------------~~tG-G---------------------M~pKveAA~~av~~g~g~~viI~~ 294 (312)
T PRK12686 266 -----------------------------FAPG-S---------------------MLPKVEAAIDFVESGEGKKAIITS 294 (312)
T ss_pred -----------------------------ccCC-C---------------------cHHHHHHHHHHHHhCCCCEEEEeC
Confidence 1133 3 9999999999999865 4566676
Q ss_pred cccCceeeeehhhcCCCccccc
Q 013700 252 GTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 252 g~~~~~ll~el~~~~g~GT~i~ 273 (438)
++.+ .+++.+. .||.|.
T Consensus 295 ---~~~i-~~aL~G~-~GT~I~ 311 (312)
T PRK12686 295 ---LEQA-KEALAGN-AGTHIT 311 (312)
T ss_pred ---chHH-HHHhCCC-CCeEEe
Confidence 3322 3445454 799884
No 26
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.75 E-value=9.2e-18 Score=161.32 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=101.0
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|+++|.+ |+++++.|..++++.+++ +|++..++.+.|+.+++.|.|||++++ +.+++|+++|+
T Consensus 82 ~l~~~g~~----a~~l~~~~~~l~~~~~~~---------~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~r 148 (239)
T cd04261 82 ALNRLGIK----AISLTGWQAGILTDGHHG---------KARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGR 148 (239)
T ss_pred HHHhCCCC----eEEechhhCCEEecCCCC---------cceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCC
Confidence 67888875 999999999999876532 789999999999999999999999998 88999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~g 148 (438)
|+|.+|+.+|.+|+|++|+++|||+|++ | ++++|++++.+|++++...|
T Consensus 149 g~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G 205 (239)
T cd04261 149 GGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLG 205 (239)
T ss_pred CChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhcc
Confidence 9999999999999999999999999883 2 58899999999999986543
No 27
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.74 E-value=1.4e-17 Score=160.04 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=100.8
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|+++|.+ |+++++.+..++++.+.+ .|++..++.+.|+.++++|.|||++++ +.+.+|+++|+
T Consensus 82 ~l~~~g~~----a~~l~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~ 148 (239)
T cd04246 82 ALNRLGIK----AISLTGWQAGILTDDHHG---------NARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGR 148 (239)
T ss_pred HHHhCCCC----eEEeccccCCEEecCCCC---------ceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCC
Confidence 78888876 999999999999876532 588999999999999999999999997 88889999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
|+|.+|+.+|.+|+|++|+|+|||+|++ +++++|++++++|+++++..|
T Consensus 149 g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G 205 (239)
T cd04246 149 GGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLG 205 (239)
T ss_pred CChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCC
Confidence 8999999999999999999999999884 358999999999999986543
No 28
>PRK09411 carbamate kinase; Reviewed
Probab=99.74 E-value=1.5e-17 Score=161.86 Aligned_cols=134 Identities=20% Similarity=0.165 Sum_probs=111.1
Q ss_pred CCcceeeeE-------eeeCHHHHHHHhcCCceEEEc-----CcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCc
Q 013700 57 VDYGATGEV-------KKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGP 124 (438)
Q Consensus 57 ~d~g~vG~v-------~~v~~~~i~~ll~~g~IPVi~-----~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~ 124 (438)
.|-.+.++| ..||.+.|+.||++|+|||++ |++.+.+|..+|||+|.+|+.||.+|+||+|+|||||+
T Consensus 146 ~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVd 225 (297)
T PRK09411 146 RDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDAD 225 (297)
T ss_pred ecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCch
Confidence 455679999 999999999999999999887 77777678899999999999999999999999999999
Q ss_pred ccc-----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCC
Q 013700 125 ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNG 199 (438)
Q Consensus 125 g~~-----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (438)
|+. +++++|++++.+|++.++..
T Consensus 226 GV~~n~~~p~~~~I~~it~~e~~~~~~~---------------------------------------------------- 253 (297)
T PRK09411 226 AVYENWGTPQQRAIRHATPDELAPFAKA---------------------------------------------------- 253 (297)
T ss_pred hhccCCCCCCCcCCCCcCHHHHHHhccC----------------------------------------------------
Confidence 873 45789999999998776431
Q ss_pred CccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 200 VGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 200 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
+| | |.+||++|..+++.|.++++|.+ .+.+ .+++.+. .||.|.
T Consensus 254 ----~G-g---------------------M~pKVeAA~~~v~~~g~~a~I~~---l~~~-~~~l~G~-~GT~I~ 296 (297)
T PRK09411 254 ----DG-A---------------------MGPKVTAVSGYVRSRGKPAWIGA---LSRI-EETLAGE-AGTCIS 296 (297)
T ss_pred ----CC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---hhHH-HHHHCCC-CCeEEe
Confidence 23 3 99999999999999888898875 2322 3555555 699875
No 29
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.73 E-value=1.5e-17 Score=163.59 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=106.0
Q ss_pred eeeCHHHHHHHhcCCceEEEcCcc----cCCCCCeeec----ChHHHHHHHHHHcCCCEEEEEecCcccc-----CCCcc
Q 013700 66 KKVDVTRMRERLDGGCLVILSNLG----YSSSGEVLNC----NTYEVATACALAIEADKLICIIDGPILD-----ESGHL 132 (438)
Q Consensus 66 ~~v~~~~i~~ll~~g~IPVi~~i~----~~~~g~~~ni----naD~~A~~lA~aL~A~~li~ltdv~g~~-----~~~~~ 132 (438)
.-||.+.|+.||++|.|||+++-+ ++.+|+++|+ |+|.+|+.||.+|+||+|+|||||+|+. +++++
T Consensus 171 ~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p~~~~ 250 (313)
T PRK12454 171 GIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKP 250 (313)
T ss_pred cccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCCCCeE
Confidence 357899999999999999999544 6778888885 6799999999999999999999999874 46899
Q ss_pred cccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccc
Q 013700 133 IRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSE 212 (438)
Q Consensus 133 i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 212 (438)
|++++.+|+++++.++.
T Consensus 251 i~~It~~e~~~~i~~g~--------------------------------------------------------------- 267 (313)
T PRK12454 251 LDKVTVEEAKKYYEEGH--------------------------------------------------------------- 267 (313)
T ss_pred ccccCHHHHHHHHhcCC---------------------------------------------------------------
Confidence 99999999999976532
Q ss_pred ccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 213 QGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|++|| |.+||++|..+++.|+.++||.+. +. +.+++.++ .||.|.
T Consensus 268 --~~~Gg---------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 268 --FKAGS---------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRII 312 (313)
T ss_pred --cCCCC---------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeC
Confidence 22233 999999999999999999999963 33 34555555 699985
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.70 E-value=6.8e-16 Score=137.13 Aligned_cols=135 Identities=31% Similarity=0.553 Sum_probs=115.1
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 357 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgq 357 (438)
+.||+++.+|++.+.+++..........+.+.+.+..++..++++..+++++|++.+.. ...+.+++..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~-~~~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHI-LWEDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEe-ccCCceEEEEEEECHHHcCC
Confidence 57999999999999999988766665556677888888888889999999999999974 34466789999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHhhhhhcCC
Q 013700 358 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS 414 (438)
Q Consensus 358 GiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~ 414 (438)
|+|++|++.+++++++.++..+.+.+ .+.+||+|+||+..+..++|+.+|..-..+
T Consensus 81 Glg~~Ll~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~~~~~~~ 136 (152)
T PRK07757 81 GIGRMLVEACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVWADCIKC 136 (152)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHHhcCccC
Confidence 99999999999999999999987665 457999999999999988987776654433
No 31
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.70 E-value=5.2e-17 Score=157.22 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCC--HHH
Q 013700 70 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQE 140 (438)
Q Consensus 70 ~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~--~~e 140 (438)
.+.|+.||+.|+|||+++.+.-..++..++|+|++|+.||.+|+||+|+|+|||+|++ +++++|++++ .+|
T Consensus 113 ~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e 192 (251)
T cd04242 113 RNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDE 192 (251)
T ss_pred HHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHH
Confidence 6889999999999999974333334566889999999999999999999999999873 2589999999 788
Q ss_pred HHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccccccccc
Q 013700 141 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 220 (438)
Q Consensus 141 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~ 220 (438)
++++..... +.+.+| |
T Consensus 193 ~~~~~~~~~--------------------------------------------------~~~~tg-g------------- 208 (251)
T cd04242 193 IEAMAGGSG--------------------------------------------------SSVGTG-G------------- 208 (251)
T ss_pred HHHHhcccC--------------------------------------------------cCcccC-C-------------
Confidence 877741110 111233 3
Q ss_pred chhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 221 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|.+||++|..|.++|++ ++|+|++.|+. +.+++.+++.||.|.
T Consensus 209 --------m~~Kl~a~~~a~~~gi~-v~I~~g~~~~~-i~~~l~g~~~GT~i~ 251 (251)
T cd04242 209 --------MRTKLKAARIATEAGIP-VVIANGRKPDV-LLDILAGEAVGTLFL 251 (251)
T ss_pred --------cHHHHHHHHHHHHCCCc-EEEEcCCCCCH-HHHHHcCCCCCeEeC
Confidence 99999999999999997 99999999985 567778888999874
No 32
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.69 E-value=1.5e-16 Score=156.23 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=103.0
Q ss_pred eCHHHHHHHhcCCceEEEcCccc-------CCCCCeee--cChHHHHHHHHHHcCCCEEEEEecCcccc------CCCcc
Q 013700 68 VDVTRMRERLDGGCLVILSNLGY-------SSSGEVLN--CNTYEVATACALAIEADKLICIIDGPILD------ESGHL 132 (438)
Q Consensus 68 v~~~~i~~ll~~g~IPVi~~i~~-------~~~g~~~n--inaD~~A~~lA~aL~A~~li~ltdv~g~~------~~~~~ 132 (438)
-..+.|+.||+.|+||||++.+. +.+++.+| +|+|++|+.+|.+|+||+|+|+|||+|++ +++++
T Consensus 138 ~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~ 217 (284)
T cd04256 138 NLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKL 217 (284)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeE
Confidence 34789999999999999986322 22345555 99999999999999999999999999884 34889
Q ss_pred cccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccc
Q 013700 133 IRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSE 212 (438)
Q Consensus 133 i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 212 (438)
|++++..+...+... . .+.+++| |
T Consensus 218 I~~i~~~~~~~~~~~-~-------------------------------------------------~s~~gtG-G----- 241 (284)
T cd04256 218 IHTFYPGDQQSITFG-T-------------------------------------------------KSRVGTG-G----- 241 (284)
T ss_pred cccccHhHHHHhhcc-c-------------------------------------------------ccCcccC-C-----
Confidence 999998665544211 1 0112244 4
Q ss_pred ccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 213 QGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|.+||++|..|.+.|++ ++|++|+.++. +.+++.++..||.|.
T Consensus 242 ----------------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~~ 284 (284)
T cd04256 242 ----------------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFFT 284 (284)
T ss_pred ----------------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEeC
Confidence 99999999999999997 89999999986 567778888899873
No 33
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.68 E-value=1.5e-16 Score=152.65 Aligned_cols=101 Identities=35% Similarity=0.438 Sum_probs=90.9
Q ss_pred cceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCcc-cCCCCCe---eecChHHHHHHH
Q 013700 33 WHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLG-YSSSGEV---LNCNTYEVATAC 108 (438)
Q Consensus 33 ~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i~-~~~~g~~---~ninaD~~A~~l 108 (438)
..++++.+.++++....+... .++.+.|+.+|++|.|||++|+. .+.+|+. .|+|+|.+|+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~l 166 (242)
T PF00696_consen 100 AHAVGLSLSDGGISAAKRDAR-------------EVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALL 166 (242)
T ss_dssp HHEEEHHHTGGTEEEEEEESS-------------EEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHH
T ss_pred HHHHhhhhhcccchhhhhhhh-------------hhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHH
Confidence 358999999999888776421 78999999999999999999986 8899999 999999999999
Q ss_pred HHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHH
Q 013700 109 ALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 146 (438)
Q Consensus 109 A~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~ 146 (438)
|.+|+|++|+|+|||+|+. +++++|++|+.+|+.++..
T Consensus 167 A~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~ 211 (242)
T PF00696_consen 167 AAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELAS 211 (242)
T ss_dssp HHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHH
T ss_pred HHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHh
Confidence 9999999999999999873 3689999999999999974
No 34
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.68 E-value=9.8e-17 Score=163.45 Aligned_cols=135 Identities=24% Similarity=0.340 Sum_probs=107.4
Q ss_pred eC-HHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCH-
Q 013700 68 VD-VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL- 138 (438)
Q Consensus 68 v~-~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~- 138 (438)
+| .+.|..||+.|+|||+++.+.....++.++|+|++|+.||.+|+|++|+|+|||+|++ |++++|++++.
T Consensus 119 ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~ 198 (372)
T PRK05429 119 LNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEI 198 (372)
T ss_pred hhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccC
Confidence 44 5889999999999999975433344566799999999999999999999999999873 35899999987
Q ss_pred -HHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccc
Q 013700 139 -QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAI 217 (438)
Q Consensus 139 -~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 217 (438)
+++++++... ++.+++| |
T Consensus 199 ~~e~~~~~~~~--------------------------------------------------~~~~gtG-G---------- 217 (372)
T PRK05429 199 TDELEAMAGGA--------------------------------------------------GSGLGTG-G---------- 217 (372)
T ss_pred CHHHHHHhcCC--------------------------------------------------CCCcCcC-C----------
Confidence 5676664321 0112233 3
Q ss_pred cccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCc
Q 013700 218 GGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 276 (438)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~ 276 (438)
|.+||++|..|.+.|++ ++|+|++.++. +.+++.++..||.|.+..
T Consensus 218 -----------M~~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~ 263 (372)
T PRK05429 218 -----------MATKLEAARIATRAGIP-VVIASGREPDV-LLRLLAGEAVGTLFLPQE 263 (372)
T ss_pred -----------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHhcCCCCCEEEeeCC
Confidence 99999999999999997 99999998884 677888888999997543
No 35
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.68 E-value=1.5e-16 Score=157.33 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=100.1
Q ss_pred eeCHHHHHHHhcCCceEEEcCccc----CCCCC----eeecChHHHHHHHHHHcCCCEEEEEecCcccc-----CCCccc
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGY----SSSGE----VLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLI 133 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~----~~~g~----~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-----~~~~~i 133 (438)
.++.+.|+.||+.|.|+|.++-|. .+++. .+|+|+|++|+.+|.+|+||+|||||||+|+. +++++|
T Consensus 169 iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~~~p~a~~i 248 (310)
T TIGR00746 169 IVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINYGKPDEKAL 248 (310)
T ss_pred hccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCCCCCCCcCC
Confidence 488999999999997544443222 23343 34899999999999999999999999999874 468999
Q ss_pred ccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccc
Q 013700 134 RFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQ 213 (438)
Q Consensus 134 ~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 213 (438)
++++.+|++.++..+. +.+| |
T Consensus 249 ~~it~~e~~~~~~~g~----------------------------------------------------~~tG-g------ 269 (310)
T TIGR00746 249 REVTVEELEDYYKAGH----------------------------------------------------FAAG-S------ 269 (310)
T ss_pred cCcCHHHHHHHHhcCC----------------------------------------------------cCCC-C------
Confidence 9999999888864322 1133 3
Q ss_pred cccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 214 GFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|.+||++|..+|+.|+.++||++ ++. +.+++.++ .||.|.
T Consensus 270 ---------------M~~Kl~AA~~~~~~g~~~v~I~~---~~~-i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 270 ---------------MGPKVEAAIEFVESGGKRAIITS---LEN-AVEALEGK-AGTRVT 309 (310)
T ss_pred ---------------cHHHHHHHHHHHHhCCCeEEEec---hHH-HHHHHCCC-CCcEEe
Confidence 99999999999999999999998 343 45666677 799885
No 36
>PRK12354 carbamate kinase; Reviewed
Probab=99.67 E-value=4.4e-16 Score=152.85 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=108.2
Q ss_pred CcceeeeEe-------eeCHHHHHHHhcCCceEEEc-----CcccCCCCCeee----cChHHHHHHHHHHcCCCEEEEEe
Q 013700 58 DYGATGEVK-------KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICII 121 (438)
Q Consensus 58 d~g~vG~v~-------~v~~~~i~~ll~~g~IPVi~-----~i~~~~~g~~~n----inaD~~A~~lA~aL~A~~li~lt 121 (438)
|-.+.++|. .++.+.|+.||++|+|||.+ |+..+.+++.+| +|+|.+|+.||.+|+||+|+|||
T Consensus 146 dg~g~rrVv~SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLT 225 (307)
T PRK12354 146 DGDYFRRVVPSPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILT 225 (307)
T ss_pred cCCceEEEecCCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEe
Confidence 444677877 79999999999999998887 887776677766 47999999999999999999999
Q ss_pred cCcccc-----CCCcccccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccc
Q 013700 122 DGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATF 196 (438)
Q Consensus 122 dv~g~~-----~~~~~i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (438)
||+|+. +++++|++++.+|++++ +.
T Consensus 226 dVdGVy~~~~~p~~k~i~~it~~e~~~~---~f----------------------------------------------- 255 (307)
T PRK12354 226 DVDAVYLDWGKPTQRAIAQATPDELREL---GF----------------------------------------------- 255 (307)
T ss_pred CCcceecCCCCCCCeECCCCCHHHHHhh---CC-----------------------------------------------
Confidence 999873 34689999999888876 11
Q ss_pred cCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCC
Q 013700 197 NNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 275 (438)
Q Consensus 197 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d 275 (438)
.+| | |.+||++|+.+++.|.++++|.+. +. +.+++.++ .||.|..+
T Consensus 256 ------~~G-g---------------------M~pKV~AA~~~~~~gg~~viI~~~---~~-l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 256 ------AAG-S---------------------MGPKVEAACEFVRATGKIAGIGSL---ED-IQAILAGE-AGTRISPE 301 (307)
T ss_pred ------CcC-C---------------------hHHHHHHHHHHHHhCCCEEEECCH---HH-HHHHHCCC-CceEEecC
Confidence 133 3 999999999999988888988642 22 45666554 79999764
No 37
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.67 E-value=1.6e-16 Score=155.02 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=101.1
Q ss_pred eeCHHHHHHHhcCCceEEEcC---cccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccC
Q 013700 67 KVDVTRMRERLDGGCLVILSN---LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 136 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~---i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l 136 (438)
....+.|+.||+.|+|||+++ ++.++.+. .+.++|++|+.||.+|+|++|+|+|||+|++ |++++|+.|
T Consensus 120 ~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I 198 (266)
T PRK12314 120 ANVKNTFESLLELGILPIVNENDAVATDEIDT-KFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEV 198 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCeeeccccc-eecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEe
Confidence 344789999999999999995 44444443 3558999999999999999999999999883 347788888
Q ss_pred CH--HHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccc
Q 013700 137 TL--QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQG 214 (438)
Q Consensus 137 ~~--~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~ 214 (438)
+. .+..++... . ++.+.+| |
T Consensus 199 ~~~~~~~~~~~~~-~-------------------------------------------------~~~~~tG-G------- 220 (266)
T PRK12314 199 TEITEEILALAGG-A-------------------------------------------------GSKFGTG-G------- 220 (266)
T ss_pred cCCCHHHHHHhcc-C-------------------------------------------------CCCcccC-c-------
Confidence 64 333332111 0 0112233 3
Q ss_pred ccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 215 FAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
|.+|+++|..|.+.|++ ++|++|+.|+. +.+++.++..||.|.+
T Consensus 221 --------------M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 221 --------------MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAP 264 (266)
T ss_pred --------------hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEcc
Confidence 99999999999999997 99999999986 4677777888999865
No 38
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.66 E-value=1.1e-15 Score=134.10 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=97.2
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEECCEEEEEEEEeeecC----CCeEEEEEE
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAI 348 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~~----~~~~~I~~v 348 (438)
.+.||+++.+|++.+.+++.......+......+.+...+ ..++++..++++||++.+..... ...++|..+
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheehee
Confidence 4679999999999999998876544332211223333332 34678888999999999864221 124578899
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 349 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 349 ~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
+|+|+|||+|+|+.|+++++++|++.|++.+.+.+ ..+++||+++||+..+.
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 99999999999999999999999999999999987 48999999999998653
No 39
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.64 E-value=7.7e-16 Score=151.68 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=101.4
Q ss_pred eeCHHHHHHHhcCCceEEEc-----CcccCCCCCeee----cChHHHHHHHHHHcCCCEEEEEecCcccc-----CCCcc
Q 013700 67 KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDGPILD-----ESGHL 132 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~-----~i~~~~~g~~~n----inaD~~A~~lA~aL~A~~li~ltdv~g~~-----~~~~~ 132 (438)
-|+.+.|+.||++|+|||++ |+..+. ++++| +|+|++|+.+|.+|+||+|+|+|||+|+. +++++
T Consensus 168 iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~-~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~~pda~~ 246 (308)
T cd04235 168 IVEIEAIKTLVDNGVIVIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKA 246 (308)
T ss_pred ccCHHHHHHHHHCCCEEEEECCCccCEEEcC-CceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCCCCCCeE
Confidence 46889999999999999999 666553 55555 68899999999999999999999999873 35899
Q ss_pred cccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccc
Q 013700 133 IRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSE 212 (438)
Q Consensus 133 i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 212 (438)
|++++.+|+.+++.++. +.+| |
T Consensus 247 i~~Is~~e~~~l~~~g~----------------------------------------------------~~tG-G----- 268 (308)
T cd04235 247 LEQVTVEELEKYIEEGQ----------------------------------------------------FAPG-S----- 268 (308)
T ss_pred cCCcCHHHHHHHHhcCc----------------------------------------------------cccC-C-----
Confidence 99999999999876542 1123 3
Q ss_pred ccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 213 QGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|.+||++|+.+++.|..+++|.+ ++.+ .+++.++ .||.|.
T Consensus 269 ----------------M~pKv~aA~~~a~~gg~~v~I~~---~~~i-~~aL~G~-~GT~I~ 308 (308)
T cd04235 269 ----------------MGPKVEAAIRFVESGGKKAIITS---LENA-EAALEGK-AGTVIV 308 (308)
T ss_pred ----------------cHHHHHHHHHHHHhCCCeEEECC---HHHH-HHHHCCC-CCeEEC
Confidence 99999999999999888899987 3333 4555555 699873
No 40
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.64 E-value=8.6e-16 Score=146.54 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=98.3
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcC-CceEEEcC-cccCCCCCeeec-
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILSN-LGYSSSGEVLNC- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~-g~IPVi~~-i~~~~~g~~~ni- 99 (438)
.|+++|.+ +.++++.+..+.+.. +++++++..++.+.|+.+++. |.|||+++ ++.+++|+++++
T Consensus 68 ~l~~~Gi~----a~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~ 134 (227)
T cd04234 68 ALRDRGIK----ARSLDARQAGITTDD---------NHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLG 134 (227)
T ss_pred HHHHCCCC----eEEeCHHHCCEEcCC---------ccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEee
Confidence 57777875 999999998777633 456888999999999999999 99999999 588889999888
Q ss_pred --ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 --NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 --naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|++|+|+|||+|++ +++++|++++.+|++++...|
T Consensus 135 rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G 192 (227)
T cd04234 135 RGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFG 192 (227)
T ss_pred CCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCC
Confidence 6999999999999999999999999874 257899999999999986544
No 41
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.63 E-value=1.1e-15 Score=148.31 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=102.1
Q ss_pred HHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcc---cccCCHH
Q 013700 70 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHL---IRFLTLQ 139 (438)
Q Consensus 70 ~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~---i~~l~~~ 139 (438)
.+.|+.||+.|.|||+++.+..+..++.|.|+|.+|+.+|.+++||+|+|+|||+|++ | ++++ |++++.+
T Consensus 118 ~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~ 197 (264)
T PTZ00489 118 HNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPD 197 (264)
T ss_pred HHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHH
Confidence 7889999999999999998777777899999999999999999999999999999873 2 2444 7788876
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
++.... +. .+.+.+| |
T Consensus 198 ~~~~~~--~~-------------------------------------------------~~~~~tG-G------------ 213 (264)
T PTZ00489 198 DLVAEA--TP-------------------------------------------------NNRFATG-G------------ 213 (264)
T ss_pred HHHHhc--Cc-------------------------------------------------CCCcccC-C------------
Confidence 553321 11 0111233 3
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcC--CCcccccC
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVAS 274 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~--g~GT~i~~ 274 (438)
|.+||.+|..|.+.|++ +.|++|+.++.+ ..++.++ ..||.|.+
T Consensus 214 ---------M~~Kl~aa~~a~~~Gi~-v~I~~g~~~~~i-~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 214 ---------IVTKLQAAQFLLERGGK-MYLSSGFHLEKA-RDFLIGGSHEIGTLFYP 259 (264)
T ss_pred ---------hHHHHHHHHHHHHCCCC-EEEEeCCCchHH-HHHHcCCCCCCceEEee
Confidence 99999999999999997 899999999865 5555443 37999865
No 42
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.63 E-value=1.1e-15 Score=154.77 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=103.7
Q ss_pred HHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCH--HHH
Q 013700 71 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEA 141 (438)
Q Consensus 71 ~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~--~e~ 141 (438)
+.|+.||+.|.||||++.......++...|+|++|+.+|.+|+||.|+|+|||+|++ |++++|++++. +++
T Consensus 119 ~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~ 198 (368)
T PRK13402 119 NTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEI 198 (368)
T ss_pred HHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHH
Confidence 799999999999999975333335566779999999999999999999999999883 25899999985 455
Q ss_pred HHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccc
Q 013700 142 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 221 (438)
Q Consensus 142 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~ 221 (438)
..+... .++++++| |
T Consensus 199 ~~l~~~--------------------------------------------------~~s~~gtG-G-------------- 213 (368)
T PRK13402 199 YAMAGG--------------------------------------------------AGSNVGTG-G-------------- 213 (368)
T ss_pred HHHhcc--------------------------------------------------cccCcCcC-C--------------
Confidence 544211 11223344 4
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCC
Q 013700 222 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 275 (438)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d 275 (438)
|.+||++|..|.+.|++ ++|++++.++. +.+++.++..||.|.+.
T Consensus 214 -------M~~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 214 -------MRTKIQAAKIAMSHGIE-TFIGNGFTADI-FNQLLKGQNPGTYFTPE 258 (368)
T ss_pred -------chHHHHHHHHHHHcCCc-EEEEcCCCchH-HHHHhcCCCCceEEecC
Confidence 99999999999999998 89999999884 56777788889999754
No 43
>PRK08210 aspartate kinase I; Reviewed
Probab=99.62 E-value=2e-15 Score=155.78 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=102.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|+++|.+ |+++++.|.+++++.+.+ .|++..++++.|..+++.|.|||++++ +.+.+|+++|+
T Consensus 89 ~l~~~Gi~----a~~l~~~~~~~~t~~~~~---------~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~r 155 (403)
T PRK08210 89 MLNENGIK----AVALTGGQAGIITDDNFT---------NAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGR 155 (403)
T ss_pred HHHhCCCC----eEEechHHccEEccCCCC---------ceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCC
Confidence 67788876 999999999999977542 588999999999999999999999998 88999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
++|.+|+.||.+|+|++++|+|||+|+. +++++|++|+.+|+.+++..|.
T Consensus 156 g~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~ 213 (403)
T PRK08210 156 GGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGA 213 (403)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCc
Confidence 6999999999999999999999999884 3589999999999999976553
No 44
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.61 E-value=1.3e-14 Score=132.12 Aligned_cols=127 Identities=28% Similarity=0.532 Sum_probs=102.8
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEE-ECCEEEEEEEEeeecCCCeEEEEEEEECccc
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPEC 354 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~-~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~y 354 (438)
..+.||+++++|.+.+.+++................+......++++. .+++++|++.+... ....++|..++|+|+|
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~-~~~~~~i~~l~V~p~~ 82 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVM-WEDLAEIRTVAVDPAA 82 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeec-CCCceEEEEEEECHHH
Confidence 446899999999999999998766544333334444445556788888 89999999988753 3456889999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccc
Q 013700 355 RGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIP 404 (438)
Q Consensus 355 RgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~lp 404 (438)
||+|+|++|+++++++|++.|++.+++.+. +.+||+|+||+..+....+
T Consensus 83 rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-~~~fY~k~GF~~~~~~~~~ 131 (169)
T PRK07922 83 RGRGVGHAIVERLLDVARELGLSRVFVLTF-EVEFFARHGFVEIDGTPVT 131 (169)
T ss_pred hCCCHHHHHHHHHHHHHHHcCCCEEEEEec-cHHHHHHCCCEECccccCC
Confidence 999999999999999999999999987764 5799999999998755433
No 45
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.60 E-value=2.6e-15 Score=147.35 Aligned_cols=136 Identities=21% Similarity=0.315 Sum_probs=111.5
Q ss_pred eeC-HHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCccc-------cCCCcccccCCH
Q 013700 67 KVD-VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTL 138 (438)
Q Consensus 67 ~v~-~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~-------~~~~~~i~~l~~ 138 (438)
..| ...|+.||+.|.||||+.+......|+...|+|++|+.+|...+||.|++|||++|+ +|+.++|++++.
T Consensus 116 y~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~ 195 (369)
T COG0263 116 YLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEE 195 (369)
T ss_pred HHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcc
Confidence 344 578999999999999999988888899999999999999999999999999999998 256788887763
Q ss_pred --HHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccccc
Q 013700 139 --QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 216 (438)
Q Consensus 139 --~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 216 (438)
.|++.+.. | .++.+++| |
T Consensus 196 it~ei~~~ag-g-------------------------------------------------sgs~~GTG-G--------- 215 (369)
T COG0263 196 ITPEIEAMAG-G-------------------------------------------------SGSELGTG-G--------- 215 (369)
T ss_pred cCHHHHHHhc-C-------------------------------------------------CCCCCCcc-c---------
Confidence 24444421 1 23445566 5
Q ss_pred ccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCc
Q 013700 217 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 276 (438)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~ 276 (438)
|.+||.||..|+++|++ +.|.+|+.++. +.++..+...||.|.+..
T Consensus 216 ------------M~TKl~AA~iA~~aG~~-~iI~~g~~~~~-i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 216 ------------MRTKLEAAKIATRAGVP-VIIASGSKPDV-ILDALEGEAVGTLFEPQA 261 (369)
T ss_pred ------------HHHHHHHHHHHHHcCCc-EEEecCCCcch-HHHHHhCCCCccEEecCC
Confidence 99999999999999997 88999999984 567778888999988544
No 46
>PTZ00330 acetyltransferase; Provisional
Probab=99.59 E-value=3.5e-14 Score=124.87 Aligned_cols=121 Identities=26% Similarity=0.365 Sum_probs=93.0
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc---------CcEEEEEECCEEEEEEEEeeec-----CCCe
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---------DSFYVVEREGQIIACAALFPFF-----KEKC 342 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~---------~~~~V~~~dg~iVG~~~l~~~~-----~~~~ 342 (438)
.+.||+++++|++.+.+++........ .+.+.+.... ..++++..++++||++.+.... ....
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 82 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLTSAPA---LSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCV 82 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhcCCCc---cchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCce
Confidence 368999999999999999876543222 2222222211 1245555689999999886322 1135
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 013700 343 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 400 (438)
Q Consensus 343 ~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~ 400 (438)
++|..++|+|+|||+|+|++|+++++++|++.++..+.+.+ ..+.+||+++||+....
T Consensus 83 ~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 83 GHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEece
Confidence 78999999999999999999999999999999999888877 57999999999998764
No 47
>PRK06635 aspartate kinase; Reviewed
Probab=99.58 E-value=1.2e-14 Score=150.11 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=100.4
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcC-cccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~-i~~~~~g~~~ni-- 99 (438)
.|+++|.+ ++++++.|.++++..+. + .|++..++.+.|+.+++.|.|||+++ ++.+++|+++++
T Consensus 84 ~l~~~g~~----a~~l~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~r 150 (404)
T PRK06635 84 ALQSLGVK----ARSFTGWQAGIITDSAH--------G-KARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGR 150 (404)
T ss_pred HHHhCCCC----eEEeChhhCCEEecCCC--------C-ceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCC
Confidence 67788875 99999999999987643 2 58899999999999999999999999 588999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
|+|.+|+.+|.+|+|++|+|+|||+|+. +++++|++++++|++++...|
T Consensus 151 g~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g 207 (404)
T PRK06635 151 GGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLG 207 (404)
T ss_pred CChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcC
Confidence 9999999999999999999999999883 358999999999999986443
No 48
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.58 E-value=3.9e-14 Score=153.47 Aligned_cols=136 Identities=29% Similarity=0.556 Sum_probs=114.3
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 357 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgq 357 (438)
++||+++.+|++.+.+++..........++..+.+......+++++.++++|||+.+... +...++|..++|+|+||||
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCC
Confidence 679999999999999998776554444556677777777788999999999999998753 3456899999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHhhhhhcCCC
Q 013700 358 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSR 415 (438)
Q Consensus 358 GiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r 415 (438)
|||++||++++++|++.|++.+++.+ .+..||+|+||+.++...+|......-+.++
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~~~~~~~~ 599 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVLKDCDQCP 599 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHHHhhccCC
Confidence 99999999999999999999998876 3579999999999999988876665555443
No 49
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.57 E-value=2.3e-14 Score=147.88 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=100.5
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCH-HHHHHHhcCCceEEEcC-cccCCCCCeeec-
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVILSN-LGYSSSGEVLNC- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~-~~i~~ll~~g~IPVi~~-i~~~~~g~~~ni- 99 (438)
.|+++|.+ |+++++.+.++++..+.+ .+++..+++ +.|..+++.|.|||+++ ++.+.+|+.+++
T Consensus 84 ~l~~~g~~----a~~l~~~~~~~~t~~~~~---------~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lg 150 (401)
T TIGR00656 84 ALRDLGVK----AIWLDGGEAGIITDDNFG---------NAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLG 150 (401)
T ss_pred HHHhCCCc----eEEeccccceEEeCCCCC---------ceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecC
Confidence 77888876 999999999999976532 477888998 99999999999999999 588889999998
Q ss_pred --ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 --NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 --naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|++|+|+|||+|+. +++++|++|+.+|+.+++..|
T Consensus 151 rg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G 208 (401)
T TIGR00656 151 RGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFG 208 (401)
T ss_pred CCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcC
Confidence 6999999999999999999999999883 367899999999999997654
No 50
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.56 E-value=1.1e-14 Score=147.92 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=99.3
Q ss_pred HHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHH-HHH
Q 013700 71 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ-EAD 142 (438)
Q Consensus 71 ~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~-e~~ 142 (438)
..|..||+.|.|||+++.+.....++-..|+|++|+.+|.+|+||+|+|+|||+|++ |++++|++++.. +..
T Consensus 115 ~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~ 194 (363)
T TIGR01027 115 NTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLL 194 (363)
T ss_pred HHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHH
Confidence 889999999999999864332223344569999999999999999999999999873 246899999753 222
Q ss_pred HHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccch
Q 013700 143 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 222 (438)
Q Consensus 143 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 222 (438)
..+..+. ++++++| |
T Consensus 195 ~~i~~~~-------------------------------------------------~~~~gtG-G--------------- 209 (363)
T TIGR01027 195 LGVAGDS-------------------------------------------------GSSVGTG-G--------------- 209 (363)
T ss_pred HHhhcCC-------------------------------------------------CcCcCcC-C---------------
Confidence 2222111 1112233 3
Q ss_pred hhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 223 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
|.+||.+|..|.+.|++ ++|++++.|+. +.+++.++..||.|.+
T Consensus 210 ------M~~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 210 ------MRTKLQAADLATRAGVP-VIIASGSKPEK-IADALEGAPVGTLFHA 253 (363)
T ss_pred ------chHHHHHHHHHHHCCCe-EEEEeCCCccH-HHHHhcCCCCcEEEee
Confidence 99999999999999997 99999998874 5677778888999975
No 51
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.54 E-value=5.1e-14 Score=120.96 Aligned_cols=119 Identities=22% Similarity=0.378 Sum_probs=90.4
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHh--hcCcEEEEEECCEEEEEEEEeeec------CCCeEEEEEEEE
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK--ALDSFYVVEREGQIIACAALFPFF------KEKCGEVAAIGV 350 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~--~~~~~~V~~~dg~iVG~~~l~~~~------~~~~~~I~~v~V 350 (438)
.||+++++|++++.+|++..+.......+....... ....+++++++++|||++.+.+.. .-..+.+..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 489999999999999998877654432211111111 125789999999999999988641 124688999999
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEe
Q 013700 351 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 398 (438)
Q Consensus 351 ~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~ 398 (438)
+|+|||||++++|++.+++.+++.|+..+++.. ....||+++||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 999999999999999999999999999888876 45799999999864
No 52
>PRK03624 putative acetyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=119.12 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=94.1
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCC--HHHHHhhc----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEE
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRT--DEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 350 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~--~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V 350 (438)
.+.||+++.+|++.+.+++... ....++. ...+.... ..++++..++++||++.+.. ......+..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~--~~~~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY--DGHRGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec--cCCCceEEEEEE
Confidence 3679999999999999998765 1112221 11222222 35778888999999998762 234467888999
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 013700 351 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 351 ~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~~ 402 (438)
+|+|||+|+|++|++.+++++++.+++.+.+.+ ..+.+||+|+||+..+...
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~ 132 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRIS 132 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEEe
Confidence 999999999999999999999999999998877 4799999999999876543
No 53
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.54 E-value=3.7e-14 Score=148.07 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=99.7
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcC-cccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~-i~~~~~g~~~ni-- 99 (438)
.|+++|++ |+++++.+.+++++... +....+..++++.|..+++.|.|||+++ ++.+.+|++.++
T Consensus 123 ~l~~~Gi~----a~~l~~~~~~l~t~~~~--------~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgr 190 (441)
T TIGR00657 123 ALEELGVK----AVSLLGGEAGILTDSNF--------GRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGR 190 (441)
T ss_pred HHHhCCCC----CEEEEcCcceEEecCCC--------CceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCC
Confidence 78888876 99999999999997653 2223578899999999999999999999 488899999888
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~g 148 (438)
|+|.+|+.+|.+|+|++|+++|||+|+. | +++++++++.+|+.+++..|
T Consensus 191 ggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G 247 (441)
T TIGR00657 191 GGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFG 247 (441)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcC
Confidence 7999999999999999999999999884 3 58999999999999997554
No 54
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.54 E-value=3.4e-14 Score=155.81 Aligned_cols=142 Identities=20% Similarity=0.170 Sum_probs=108.5
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCC-------CCeeecChHHHHHHHHHHcCCCEEEEEecCcccc------CCCccc
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSS-------GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLI 133 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~-------g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~------~~~~~i 133 (438)
....+.|+.||+.|.|||+++.+.... +...|+|+|++|+.||.+|+||+|+|+|||+|++ +++++|
T Consensus 136 ~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i 215 (718)
T PLN02418 136 KQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLI 215 (718)
T ss_pred HhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEc
Confidence 445789999999999999998533221 2337889999999999999999999999999884 246888
Q ss_pred ccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccc
Q 013700 134 RFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQ 213 (438)
Q Consensus 134 ~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 213 (438)
++++..+.+..+..+. .+...+| |
T Consensus 216 ~~i~~~~~~~~i~~~~-------------------------------------------------~s~~~tG-G------ 239 (718)
T PLN02418 216 HTYIKEKHQDEITFGE-------------------------------------------------KSRVGRG-G------ 239 (718)
T ss_pred ceecccchhhhhhccc-------------------------------------------------ccccCCC-C------
Confidence 8887655444332221 0111234 4
Q ss_pred cccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCceeEEEE
Q 013700 214 GFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRT 282 (438)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~~IR~ 282 (438)
|.+||++|..|.++|++ ++|++|+.++. +.+++.++..||.|..+..+ +.+
T Consensus 240 ---------------M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~-~~~ 290 (718)
T PLN02418 240 ---------------MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQDAHL-WAP 290 (718)
T ss_pred ---------------cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEeccccch-hhh
Confidence 99999999999999997 89999999985 56778888899999886554 444
No 55
>PRK08841 aspartate kinase; Validated
Probab=99.54 E-value=5.7e-14 Score=144.01 Aligned_cols=113 Identities=18% Similarity=0.321 Sum_probs=99.7
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|+++|.+ |.++++.+.++++.... ..++|..++++.|+.+++.|.|||++++ +.+++|++.++
T Consensus 84 ~L~~~Gi~----a~~l~~~~~~i~t~~~~---------~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgr 150 (392)
T PRK08841 84 TLNKLGYA----ARSLTGAQANIVTDNQH---------NDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGR 150 (392)
T ss_pred HHHhCCCC----eEEEehhHcCEEecCCC---------CCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCC
Confidence 67788875 99999999988885432 1588989999999999999999999996 88999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|+.|+++|||+|+ | +++++|++|+++|+.++...|
T Consensus 151 ggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~G 207 (392)
T PRK08841 151 GGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKG 207 (392)
T ss_pred CChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcC
Confidence 999999999999999999999999987 3 358999999999999997554
No 56
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.54 E-value=2.6e-14 Score=133.50 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=108.9
Q ss_pred eeeEeeeCHHHHHHHhcCCceEEEcC-cccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCc-ccccCCH
Q 013700 62 TGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGH-LIRFLTL 138 (438)
Q Consensus 62 vG~v~~v~~~~i~~ll~~g~IPVi~~-i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~-~i~~l~~ 138 (438)
-|++..-..+.|..+|+.|+|||+.. +..+.+..+..+++|+++..||+.|+||+++|+|||||+. .++. .++....
T Consensus 109 ~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l 188 (252)
T COG1608 109 NGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLL 188 (252)
T ss_pred CCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccch
Confidence 57777777999999999999999976 4666666889999999999999999999999999999874 4444 4444445
Q ss_pred HHHHHHHHhh-hhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccc
Q 013700 139 QEADSLIRQR-VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAI 217 (438)
Q Consensus 139 ~e~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 217 (438)
.+++.+..-+ +...|+ || |
T Consensus 189 ~~i~~~~~~~gs~~~DV-------------------------------------------------TG-G---------- 208 (252)
T COG1608 189 SEIEGRVALGGSGGTDV-------------------------------------------------TG-G---------- 208 (252)
T ss_pred hhhhhhhhhcCcCcccc-------------------------------------------------hh-h----------
Confidence 5666654322 111222 44 4
Q ss_pred cccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 218 GGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|..||+++....++|.. |+++||+.+++| ..++.++..||.|.
T Consensus 209 -----------i~~Kl~~~~~~~~~~~~-vyi~ng~~~~ni-~~~l~G~~vGT~I~ 251 (252)
T COG1608 209 -----------IAKKLEALLEIARYGKE-VYIFNGNKPENI-YRALRGENVGTRID 251 (252)
T ss_pred -----------HHHHHHHHHHHHhcCce-EEEECCCCHHHH-HHHhcCCCCceEec
Confidence 99999999999999988 999999999976 55666778899985
No 57
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.53 E-value=2.7e-14 Score=141.39 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|+++|++ |++|++.|.++++....+ +. ...++....++... ..+++.+.|||++++ +.+.+|++.++
T Consensus 136 ~L~~~Gi~----a~~l~~~~~~i~t~~~~~--~a--~~~~~~~~~i~~~l-~~ll~~~~vpVv~Gfig~~~~g~~ttlgR 206 (298)
T cd04244 136 ALRSLGIK----ARALDGGEAGIITDDNFG--NA--RPLPATYERVRKRL-LPMLEDGKIPVVTGFIGATEDGAITTLGR 206 (298)
T ss_pred HHHhCCCC----eEEEcHHHcceeecCccc--cc--ccchhHHHHHHHHH-HHHhhcCCEEEEeCccccCCCCCEEEecC
Confidence 77888876 999999999999977542 11 11145555666554 578899999999995 88999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|++++|+|||+|+. | ++++|++|+++|+.++...|
T Consensus 207 ggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~G 263 (298)
T cd04244 207 GGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFG 263 (298)
T ss_pred CChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCC
Confidence 9999999999999999999999999883 3 58999999999999997554
No 58
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.52 E-value=2.3e-13 Score=132.89 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=99.7
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcC-CHHHHHhhc---CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECc
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 352 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~-~~e~l~~~~---~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p 352 (438)
.+.||+++++|++.+.+|+...+... ..+. ..+.+...+ ..+++++.++++||++.+........++|..++|+|
T Consensus 115 ~~~IR~a~~~D~~~l~~L~~~v~~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P 193 (266)
T TIGR03827 115 GFTLRIATEDDADAMAALYRKVFPTY-PFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLP 193 (266)
T ss_pred ceEEEECCHHHHHHHHHHHHHHhccC-CCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECH
Confidence 46799999999999999998866432 2222 223233322 346788889999999987544455678999999999
Q ss_pred cccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 353 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 353 ~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
+|||+|+|++||+.+++++++.|++.+++.+ ..+..+|+|+||+.++..
T Consensus 194 ~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l 246 (266)
T TIGR03827 194 EYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTL 246 (266)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEE
Confidence 9999999999999999999999999998877 467899999999998864
No 59
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.52 E-value=5.1e-14 Score=154.59 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=104.7
Q ss_pred CHHHHHHHhcCCceEEEcCcccCCC-------CCeeecChHHHHHHHHHHcCCCEEEEEecCcccc------CCCccccc
Q 013700 69 DVTRMRERLDGGCLVILSNLGYSSS-------GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRF 135 (438)
Q Consensus 69 ~~~~i~~ll~~g~IPVi~~i~~~~~-------g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~------~~~~~i~~ 135 (438)
..+.|+.||+.|.|||+++.+...+ ++-+|+|+|++|+.||.+|+||+|+|+|||+|++ +++++|++
T Consensus 130 ~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~ 209 (715)
T TIGR01092 130 LNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDT 209 (715)
T ss_pred HHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeee
Confidence 4779999999999999987432211 1235999999999999999999999999999884 34889999
Q ss_pred CCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccc
Q 013700 136 LTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGF 215 (438)
Q Consensus 136 l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~ 215 (438)
++..+.+..+..+. .+...+| |
T Consensus 210 i~~~~~~~~i~~~~-------------------------------------------------~~~~~tG-G-------- 231 (715)
T TIGR01092 210 FYKEKHQGEITFGT-------------------------------------------------KSRLGRG-G-------- 231 (715)
T ss_pred ecccchhhhhccCc-------------------------------------------------ccccCCC-C--------
Confidence 98655442222211 1111233 3
Q ss_pred cccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCcee
Q 013700 216 AIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 278 (438)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~~ 278 (438)
|.+||++|..|.+.|++ ++|++++.++. +..++.++..||.|..+..|
T Consensus 232 -------------M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 232 -------------MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred -------------chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEecccchh
Confidence 99999999999999997 99999998886 56777778889999876544
No 60
>PRK07431 aspartate kinase; Provisional
Probab=99.49 E-value=2.2e-13 Score=147.06 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=97.8
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccC--CCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYS--SSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~--~~g~~~ni 99 (438)
.|+++|.+ |+++++.|.+++++... | .|++..++++.|..+++.|.|||++++ |.+ ..|++.++
T Consensus 84 ~l~~~gi~----a~~l~~~~~~~~~~~~~--------~-~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~l 150 (587)
T PRK07431 84 ALHELGQP----AISLTGAQVGIVTESEH--------G-RARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTL 150 (587)
T ss_pred HHHHCCCC----eEEechhHcCeEecCCC--------C-ceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeec
Confidence 57788876 99999999999986643 2 489999999999999999999999986 554 44888887
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHhh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.||.+|+|++|+|+|||+|++ | ++++|++++.+|+.+++..|
T Consensus 151 grggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G 209 (587)
T PRK07431 151 GRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLG 209 (587)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCC
Confidence 8999999999999999999999999884 3 58999999999999997554
No 61
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=9e-13 Score=114.73 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=100.9
Q ss_pred eeEEEECCccCHHHHHHHHHHHH---HcCcCCcCCHHHHHhh--c----CcEEEEEE---CCEEEEEEEEeeecC----C
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLV---ESGALVRRTDEELLKA--L----DSFYVVER---EGQIIACAALFPFFK----E 340 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~---~~~~~~~~~~e~l~~~--~----~~~~V~~~---dg~iVG~~~l~~~~~----~ 340 (438)
.+.||.++++|.+.+.+|++++. ....+...+.+.+... + .+++++.. ++.++||+.+++..+ .
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k 82 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGK 82 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccccc
Confidence 46899999999999999998853 3334455566666664 2 34555544 789999999886433 3
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
...+|..+||.|+|||+|+|++|++.+-+.|.+.|+.++...+ .+|+.||++.|++....
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 6779999999999999999999999999999999999999888 58999999999997644
No 62
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.49 E-value=9.9e-13 Score=116.01 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=93.3
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcC-c--EEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccc
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALD-S--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 354 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~-~--~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~y 354 (438)
++||+++.+|++.+.++.... ...++..+.+..... . .+.+..++++||++.+.... +..++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA----HAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc----CCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 579999999999999986432 223455555543322 2 23456789999999887533 34678889999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 355 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 355 RgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
||+|+|+.|++.+++.+++.++..+.+.+ ..+.+||+|+||+..+..
T Consensus 76 rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~ 126 (146)
T PRK09491 76 QRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIR 126 (146)
T ss_pred ccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeee
Confidence 99999999999999999999999998876 579999999999987743
No 63
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.47 E-value=1.6e-12 Score=115.87 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=92.9
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcC---cCCcCCHHHHHhhc-----CcEEEEEECCEEEEEEEEeeecC---CCeEEEE
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK---EKCGEVA 346 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~---~~~~~~~e~l~~~~-----~~~~V~~~dg~iVG~~~l~~~~~---~~~~~I~ 346 (438)
+.||+++.+|++.+.+++....... .....+.+.+...+ ..++++..++++||++.+..... ...+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 6799999999999999986532111 11223444444433 23577788999999999874322 223454
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 347 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 347 ~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
.++|+|+|||+|+|++|++.+++++++ .++..+.+.+ .++.+||+|+||+..+..
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 599999999999999999999999987 6888887766 589999999999998763
No 64
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.47 E-value=7.4e-13 Score=117.26 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=91.6
Q ss_pred ceeEEEECCccCHH-HHHHHHHHHHHcCcCCcCCHHHHHhhc--------C-cEEEEEE--CCEEEEEEEEeeec-----
Q 013700 276 LYEGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL--------D-SFYVVER--EGQIIACAALFPFF----- 338 (438)
Q Consensus 276 ~~~~IR~at~~D~~-~I~~L~~~~~~~~~~~~~~~e~l~~~~--------~-~~~V~~~--dg~iVG~~~l~~~~----- 338 (438)
+.+.||+++.+|.+ .+.+++...... .+++.+.+.+.+ . .++++.. ++++||++.+....
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLTVV---GDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRN 81 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhccCC---CCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccC
Confidence 34679999999998 588887664322 244544544432 1 2445555 58999999874221
Q ss_pred CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 013700 339 KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 400 (438)
Q Consensus 339 ~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~ 400 (438)
....++|..++|+|+|||||||++|++.++++|++.|++++.+.+ .....||+|+||+..+.
T Consensus 82 ~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~ 144 (150)
T PLN02706 82 CGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEI 144 (150)
T ss_pred CCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehh
Confidence 124567888999999999999999999999999999999999988 34468999999998764
No 65
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.46 E-value=1.3e-12 Score=110.12 Aligned_cols=103 Identities=31% Similarity=0.495 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCcCC---------cCCHHHHHhhc----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECcc
Q 013700 287 DLSGIKQIIQPLVESGALV---------RRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 353 (438)
Q Consensus 287 D~~~I~~L~~~~~~~~~~~---------~~~~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~ 353 (438)
|+++|.+|+.......... ..+.+.+...+ ..+++++.++++|||+.+. ...+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 7899999998866553321 13455555554 3589999999999999986 2344999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCC
Q 013700 354 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 395 (438)
Q Consensus 354 yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF 395 (438)
|||+|+|++|++.+++++++ +++.+.+.. ..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999977 999888877 578999999998
No 66
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.46 E-value=8.2e-13 Score=122.45 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=94.3
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcC-cCCcCC-HH---H-HHh----hc----Cc-EE-EEEECCEEEEEEEEeeecCC
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESG-ALVRRT-DE---E-LLK----AL----DS-FY-VVEREGQIIACAALFPFFKE 340 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~-~~~~~~-~e---~-l~~----~~----~~-~~-V~~~dg~iVG~~~l~~~~~~ 340 (438)
.+.||+++.+|.+.+.+++...+... +..++. .+ . +.. .. .. .+ +...+++++|++.+.... .
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~-~ 121 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN-D 121 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC-C
Confidence 35799999999999999998874321 221221 11 1 111 11 12 23 345578999999987543 3
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
..+++..++|+|+|||||+|++|++.++++|+++|+..+.+.+ ..+.+||+|+||+..+..
T Consensus 122 ~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 122 TDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 5678999999999999999999999999999999999999987 579999999999987654
No 67
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.46 E-value=8.1e-13 Score=104.59 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.2
Q ss_pred EEECCEEEEEEEEeeecCC----CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHC
Q 013700 322 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 393 (438)
Q Consensus 322 ~~~dg~iVG~~~l~~~~~~----~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~ 393 (438)
+++++++||++.+.+.... +.++|..++|+|+|||+|+|+.|++++++++++.|++.+.+.+ ..+.+||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4789999999999876554 7999999999999999999999999999999999999999988 5789999999
Q ss_pred CCe
Q 013700 394 GFR 396 (438)
Q Consensus 394 GF~ 396 (438)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 68
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.46 E-value=2.9e-13 Score=129.13 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=103.5
Q ss_pred eeeCHHHHHHHhcCCceEEEcC-----cccCCC---CCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-----CCCcc
Q 013700 66 KKVDVTRMRERLDGGCLVILSN-----LGYSSS---GEVLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHL 132 (438)
Q Consensus 66 ~~v~~~~i~~ll~~g~IPVi~~-----i~~~~~---g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-----~~~~~ 132 (438)
.-++.+.|+.|+++|.++|.++ +..+.. |---.||.|.+++.||..++||.|++||||+.+. |+.+.
T Consensus 170 ~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gkp~q~~ 249 (312)
T COG0549 170 RIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQA 249 (312)
T ss_pred cchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCCccchh
Confidence 3568999999999999999873 333333 4455789999999999999999999999999652 67899
Q ss_pred cccCCHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccc
Q 013700 133 IRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSE 212 (438)
Q Consensus 133 i~~l~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 212 (438)
|++++++|+++|++++
T Consensus 250 L~~v~~~e~~~yl~eg---------------------------------------------------------------- 265 (312)
T COG0549 250 LDRVTVDEMEKYLAEG---------------------------------------------------------------- 265 (312)
T ss_pred hcccCHHHHHHHHhcC----------------------------------------------------------------
Confidence 9999999999998775
Q ss_pred ccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 213 QGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
+||+|| |.|||+||+..++++-+++.|.+-. . +.+.+. ...||.|.
T Consensus 266 -~Fa~GS---------M~PKVeAai~Fv~~~gk~A~ItsLe---~-~~~~l~-g~~GT~I~ 311 (312)
T COG0549 266 -QFAAGS---------MGPKVEAAISFVENTGKPAIITSLE---N-AEAALE-GKAGTVIV 311 (312)
T ss_pred -CCCCCC---------ccHHHHHHHHHHHcCCCceEECcHH---H-HHHHhc-cCCCcEec
Confidence 377778 9999999999999998888777522 1 234443 34589875
No 69
>PHA00673 acetyltransferase domain containing protein
Probab=99.45 E-value=1.3e-12 Score=116.23 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=91.2
Q ss_pred ECCccCHHHHHHHHHHHHHc---CcC-CcCC----HHHHHhhc-CcEEEEEECCEEEEEEEEeeec-----CCCeEEEEE
Q 013700 282 TAKVTDLSGIKQIIQPLVES---GAL-VRRT----DEELLKAL-DSFYVVEREGQIIACAALFPFF-----KEKCGEVAA 347 (438)
Q Consensus 282 ~at~~D~~~I~~L~~~~~~~---~~~-~~~~----~e~l~~~~-~~~~V~~~dg~iVG~~~l~~~~-----~~~~~~I~~ 347 (438)
-++.+|+|.|.+|+.+..-. ... .+.+ .+.+.+.- ..+++++++|++|||+.+...+ ....+.|..
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~ 90 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTES 90 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEE
Confidence 47899999999998772111 111 1111 12222222 4577888899999999876433 235678999
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH---HHHHHHHHCCCeEece
Q 013700 348 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFRECSI 400 (438)
Q Consensus 348 v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~---~a~~fY~k~GF~~~g~ 400 (438)
++|+|++||+|||++|+++++++|+++||..+++..+ .+..||.++|+++...
T Consensus 91 l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 91 IFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhch
Confidence 9999999999999999999999999999999999884 6799999999998654
No 70
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.45 E-value=2.3e-13 Score=127.59 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=65.6
Q ss_pred CHHHHHHHhcCCceEEEcCccc----CCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-CCCcccccCCHHHHH
Q 013700 69 DVTRMRERLDGGCLVILSNLGY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEAD 142 (438)
Q Consensus 69 ~~~~i~~ll~~g~IPVi~~i~~----~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-~~~~~i~~l~~~e~~ 142 (438)
+...+..++..|.|||+.|.+. +..++.+|+|+|++|+.+|.+|+|++|+++|||+|++ .++++|++++.+++.
T Consensus 80 ~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~~ 158 (203)
T cd04240 80 TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAELL 158 (203)
T ss_pred CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHhC
Confidence 3578899999999999999976 5668889999999999999999999999999999985 569999999987653
No 71
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.45 E-value=3.1e-13 Score=131.38 Aligned_cols=80 Identities=21% Similarity=0.143 Sum_probs=67.8
Q ss_pred EeeeCHHHHHHHhcCCceEEEcCccc-------CCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCC
Q 013700 65 VKKVDVTRMRERLDGGCLVILSNLGY-------SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESG 130 (438)
Q Consensus 65 v~~v~~~~i~~ll~~g~IPVi~~i~~-------~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~ 130 (438)
++..+.+.|+.+|+.|.|||+++... +..|+..++|+|++|+.+|.+|+|++|+++|||+|++ +++
T Consensus 120 i~~~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a 199 (262)
T cd04255 120 VGHGDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKA 199 (262)
T ss_pred cccccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCC
Confidence 55677889999999999999998731 2235678999999999999999999999999999873 358
Q ss_pred cccccCCHHHHHHH
Q 013700 131 HLIRFLTLQEADSL 144 (438)
Q Consensus 131 ~~i~~l~~~e~~~l 144 (438)
++|++++.+++.++
T Consensus 200 ~~i~~i~~~~~~~~ 213 (262)
T cd04255 200 EFIPEISAAELLKK 213 (262)
T ss_pred eEccEeCHHHHHHH
Confidence 99999998776665
No 72
>PRK09831 putative acyltransferase; Provisional
Probab=99.45 E-value=1.1e-12 Score=116.31 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=87.2
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHH-----------hhc--CcEEEEEECCEEEEEEEEeeecCCCeEE
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELL-----------KAL--DSFYVVEREGQIIACAALFPFFKEKCGE 344 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~-----------~~~--~~~~V~~~dg~iVG~~~l~~~~~~~~~~ 344 (438)
+.||+++++|.+.+.+++.....+......+.+.+. ..+ ..++++..+++++|++.+.. .+
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~ 74 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HY 74 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------ce
Confidence 368999999999999999876544332222322222 111 35788889999999998752 46
Q ss_pred EEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceec
Q 013700 345 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 345 I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~ 402 (438)
+..++|+|+|||+|+|++||+++++.+.+. .+.. +..+.+||+|+||+..+...
T Consensus 75 i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~l---~v~~-~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 75 IDMLFVDPEYTRRGVASALLKPLIKSESEL---TVDA-SITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeeEEECHHHcCCCHHHHHHHHHHHHhhhe---Eeec-chhhHHHHHHCCCEEeeccc
Confidence 788999999999999999999999998762 2222 25789999999999998754
No 73
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.44 E-value=1.1e-12 Score=117.82 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=89.6
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc-CcEEEEE-ECCEEEEEEEEeeec-CCCeEEEEEEEECccccC
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 356 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~-~~~~V~~-~dg~iVG~~~l~~~~-~~~~~~I~~v~V~p~yRg 356 (438)
||+++.+|++.+.+|+................+.... ..+++++ .++++||++.+.... .....++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 6899999999999998765321111111111121222 3456666 467999998765332 345688999999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEec
Q 013700 357 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 399 (438)
Q Consensus 357 qGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g 399 (438)
+|||++|++.+++++++.++..+.+.+ +.+++||+|+||+...
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 999999999999999999999998877 5889999999998743
No 74
>PRK06291 aspartate kinase; Provisional
Probab=99.44 E-value=4.3e-13 Score=140.87 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=93.3
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEeccc--ccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGV--VDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~--~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|+++|.+ |.++++.|.++++....+. ++..++++++ +.+..+++.|.|||++++ |.+.+|++.|+
T Consensus 140 ~L~~~Gi~----a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~vpVv~Gfig~~~~g~~~tl 208 (465)
T PRK06291 140 ALRDLGIK----SVALTGGEAGIITDSNFGNARPLPKTYERVK-------ERLEPLLKEGVIPVVTGFIGETEEGIITTL 208 (465)
T ss_pred HHHhCCCC----eEEEchHHCcEEecCCCCceeechhhHHHHH-------HHHHHHhhcCcEEEEeCcEEcCCCCCEEEe
Confidence 67888875 9999999999999765431 0112223222 468889999999999995 88999999999
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQ 147 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~ 147 (438)
++|.+|+.+|.+|+|++++++|||+|++ | ++++|++++.+|+.++...
T Consensus 209 grggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~ 266 (465)
T PRK06291 209 GRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYF 266 (465)
T ss_pred cCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhC
Confidence 9999999999999999999999999883 3 6899999999999998543
No 75
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.44 E-value=1.4e-12 Score=115.85 Aligned_cols=127 Identities=25% Similarity=0.293 Sum_probs=96.2
Q ss_pred EEECC-ccCHHHHHHHHHHHHHcCcC-CcCC---HHHHHhhc-----CcEEEEEECCEEEEEEEEeee-----cCCCeEE
Q 013700 280 TRTAK-VTDLSGIKQIIQPLVESGAL-VRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPF-----FKEKCGE 344 (438)
Q Consensus 280 IR~at-~~D~~~I~~L~~~~~~~~~~-~~~~---~e~l~~~~-----~~~~V~~~dg~iVG~~~l~~~-----~~~~~~~ 344 (438)
||+++ .+|++.|.++++......+. ..++ .+.+...+ ...+|++.||+++|++.++.. ..+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 79999 99999999999876544333 2222 22333333 247899999999999988641 1346778
Q ss_pred EEEEEECccccCCcHHHHHHHHHHHHHHHC-CCCEEEEEc----HHHHHHHHHCCCeEeceeccchH
Q 013700 345 VAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSIEMIPEE 406 (438)
Q Consensus 345 I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~-g~~~l~l~t----~~a~~fY~k~GF~~~g~~~lp~~ 406 (438)
++.++++|+|||+|+|+.+++.+++++.+. ++..+.+.+ .+++++|+|+||+.++..++|..
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~~~~ 147 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEFPDK 147 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEESSE
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEECCCC
Confidence 888999999999999999999999999875 899999988 58999999999999999887753
No 76
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.43 E-value=5.7e-12 Score=111.85 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=92.0
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCc----CCHHHHHhhc--------CcEEEEEE-CCEEEEEEEEeeecC-CCeEEE
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFFK-EKCGEV 345 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~----~~~e~l~~~~--------~~~~V~~~-dg~iVG~~~l~~~~~-~~~~~I 345 (438)
||+++++|++.|.++++......+... .+.+.+..++ ..++++.. +|++||++.+.+... ...+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 799999999999999987543333321 2233333222 34666666 999999999986543 356666
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 346 AAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 346 ~~v~V~p~yRgqGiG~~Ll~~l~~~a-~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
.++|.|+||++|+|+.|++.++++| ++.|++.+++.+ ..+.+||+++||+..+..
T Consensus 81 -~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~ 140 (155)
T PF13420_consen 81 -SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGEL 140 (155)
T ss_dssp -EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEE
T ss_pred -eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEE
Confidence 5888899999999999999999999 999999999877 589999999999999864
No 77
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.42 E-value=2.3e-13 Score=126.15 Aligned_cols=133 Identities=21% Similarity=0.227 Sum_probs=102.7
Q ss_pred HHHHHHHhcCCceEEEcCcccCCCCCeeecC---hHHHHHHHHHHcCCCEEEEEecCccccC---C---CcccccCCHHH
Q 013700 70 VTRMRERLDGGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILDE---S---GHLIRFLTLQE 140 (438)
Q Consensus 70 ~~~i~~ll~~g~IPVi~~i~~~~~g~~~nin---aD~~A~~lA~aL~A~~li~ltdv~g~~~---~---~~~i~~l~~~e 140 (438)
...|++||..|.|||++....-.--++.+-| +|.+|+.+|..++||.||+||||+|++. + .++|+..+..+
T Consensus 135 ~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~ 214 (285)
T KOG1154|consen 135 QNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGD 214 (285)
T ss_pred HHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCC
Confidence 5689999999999999987544344555665 9999999999999999999999999852 2 34455443211
Q ss_pred HHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccccccccc
Q 013700 141 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 220 (438)
Q Consensus 141 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~ 220 (438)
- -..-+|+.++.+++| |
T Consensus 215 ~-------------------------------------------------~v~~tfG~~SkvGtG-G------------- 231 (285)
T KOG1154|consen 215 P-------------------------------------------------QVSTTFGSKSKVGTG-G------------- 231 (285)
T ss_pred C-------------------------------------------------CCccccCccCccCcC-c-------------
Confidence 0 012357778888888 6
Q ss_pred chhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCC
Q 013700 221 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 275 (438)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d 275 (438)
|.+||.||..|+..||. +.|++|..|.. +..++.+.-.||.+...
T Consensus 232 --------M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 232 --------METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQL 276 (285)
T ss_pred --------chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhhc
Confidence 99999999999999997 88999999986 46777777778887653
No 78
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=6.1e-12 Score=113.58 Aligned_cols=145 Identities=26% Similarity=0.243 Sum_probs=110.0
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcC----CcCCHHHHHhhc----C---cEEEEEEC-CEEEEEEEEeeecCC---Ce
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL----D---SFYVVERE-GQIIACAALFPFFKE---KC 342 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~----~~~~~e~l~~~~----~---~~~V~~~d-g~iVG~~~l~~~~~~---~~ 342 (438)
+.||+++..|++.|.++++........ .+.+.+.+.++. . .++|++.+ |+++|++.+.++... ..
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 579999999999999999997765432 455777776655 1 45667655 899999999876543 22
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCce
Q 013700 343 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSK 418 (438)
Q Consensus 343 ~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~ 418 (438)
..-..+||+|++||+|+|++|++.+++.++.+|++.+.... ..+.++++++||+.++...--. .....-.+.
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg----~k~g~wld~ 157 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVG----DKFGRWLDL 157 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccc----cccceEEee
Confidence 23349999999999999999999999999999998887666 4899999999999998653221 112222355
Q ss_pred EEEEccCC
Q 013700 419 YYMKKLLP 426 (438)
Q Consensus 419 ~~~k~ll~ 426 (438)
.+|.+.+.
T Consensus 158 ~~~~~~l~ 165 (169)
T COG1247 158 VLMQLLLE 165 (169)
T ss_pred eeeehhhc
Confidence 67766654
No 79
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.41 E-value=3.8e-12 Score=118.15 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=94.4
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHc-CcCCcC-CHH----HHHhhc---------CcEEEEE-ECCEEEEEEEEeeecCC
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVES-GALVRR-TDE----ELLKAL---------DSFYVVE-REGQIIACAALFPFFKE 340 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~-~~~~~~-~~e----~l~~~~---------~~~~V~~-~dg~iVG~~~l~~~~~~ 340 (438)
...||+++++|++.+.+++...+.. .+..++ +.+ .+..++ ..++++. .++++||++.+... ..
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~-~~ 124 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLREL-ND 124 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEec-CC
Confidence 4569999999999999999886443 222222 211 111111 1344554 46789999998753 33
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
..++|..++|+|+|||||+|++|++.+++++++.|++.+.+.+ +.+.+||+|+||+..+..
T Consensus 125 ~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 125 TDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 4588989999999999999999999999999999999999877 578999999999998764
No 80
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.39 E-value=4.4e-12 Score=111.67 Aligned_cols=100 Identities=21% Similarity=0.196 Sum_probs=79.2
Q ss_pred cEEEEEECCE-EEEEEEEeeec--CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHH
Q 013700 318 SFYVVEREGQ-IIACAALFPFF--KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWF 390 (438)
Q Consensus 318 ~~~V~~~dg~-iVG~~~l~~~~--~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY 390 (438)
.++++.+++. .||++...... ....++|..++|+++|||||||++|.+.+++.++.+|+..+.+.| ..|.++|
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 3444444333 48888765321 135799999999999999999999999999999999999999999 4899999
Q ss_pred HHCCCeEeceeccchHhhhhhcCCCCceEEEEcc
Q 013700 391 KSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 424 (438)
Q Consensus 391 ~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~l 424 (438)
+++||+..+.. ..|.+++.+.+.++-.
T Consensus 137 ~sLGF~r~~r~-------~~YYlng~dA~rl~L~ 163 (165)
T KOG3139|consen 137 ESLGFKRDKRL-------FRYYLNGMDALRLKLF 163 (165)
T ss_pred HhcCceEecce-------eEEEECCcceEEEEee
Confidence 99999997655 2566777777777643
No 81
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.37 E-value=5.4e-12 Score=107.87 Aligned_cols=109 Identities=24% Similarity=0.381 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHH
Q 013700 287 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 362 (438)
Q Consensus 287 D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~ 362 (438)
|.+.+.++....+.. +++.+.+...+ ..++++.+++++||++.+... ....++..++|+|+|||||+|++
T Consensus 1 d~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAAFAF----PWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIV--LDEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhhCCC----CCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEec--CCCeEEEEEEECHHHcCCCHHHH
Confidence 567777776554433 55666665544 245666678999999998743 34567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 363 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 363 Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
|++++++++.+.+++.+.+.+ ..+.+||+++||+..+..
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 117 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIR 117 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccc
Confidence 999999999999999998876 468999999999988754
No 82
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.37 E-value=1e-11 Score=98.16 Aligned_cols=75 Identities=36% Similarity=0.730 Sum_probs=64.4
Q ss_pred cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCe
Q 013700 318 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 396 (438)
Q Consensus 318 ~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~ 396 (438)
.+++++++++++||+.+.+ .++..+|..++|+|+|||+|||++|++++.+.+. .+.+++.+ +.+.+||+++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~---~~~i~l~~~~~~~~fY~~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWP--NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK---SKKIFLFTNPAAIKFYEKLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEE--TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT---CSEEEEEEEHHHHHHHHHTTEE
T ss_pred EEEEEEECCEEEEEEEEEE--cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC---CCcEEEEEcHHHHHHHHHCcCC
Confidence 5788999999999999974 3458999999999999999999999999988884 35567766 6899999999998
Q ss_pred E
Q 013700 397 E 397 (438)
Q Consensus 397 ~ 397 (438)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 83
>PRK10314 putative acyltransferase; Provisional
Probab=99.37 E-value=4.4e-12 Score=113.68 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=89.0
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHh--hcCcEEEEEECCEEEEEEEEeeecC-CCeEEEEEEEECccccC
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK--ALDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRG 356 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~--~~~~~~V~~~dg~iVG~~~l~~~~~-~~~~~I~~v~V~p~yRg 356 (438)
+..++.+++..+..+....+......+...-+-.. .....+++..++++||++.+.+..+ ...++|..++|+|+|||
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG 88 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRG 88 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhC
Confidence 34567777788888877765443222221111111 1234566778999999999985432 23579999999999999
Q ss_pred CcHHHHHHHHHHHHHHHC-CCCEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 357 QGQGDKLLDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 357 qGiG~~Ll~~l~~~a~~~-g~~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
+|+|++||+.+++++++. +...+++.+ ..+.+||+|+||+.++..
T Consensus 89 ~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 89 EKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 999999999999999774 677888877 467899999999998754
No 84
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.36 E-value=2.3e-12 Score=123.09 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=93.8
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHH
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQ 139 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~ 139 (438)
..+.+.|..+++.|.|||+++.. |.. ..++|.+|+.+|.+|+|++|+|+|||+|++ | ++++|++++.+
T Consensus 105 ~~~~~~l~~~l~~g~ipVi~g~~----g~~-~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~ 179 (229)
T cd04239 105 PYIRRRAIRHLEKGRIVIFGGGT----GNP-GFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYD 179 (229)
T ss_pred cccHHHHHHHHhCCCEEEEeCcc----CCC-CCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHH
Confidence 34789999999999999999765 332 348999999999999999999999999883 2 48999999988
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
|+.++..
T Consensus 180 e~~~~~~------------------------------------------------------------------------- 186 (229)
T cd04239 180 ELLKKGL------------------------------------------------------------------------- 186 (229)
T ss_pred HHHHHhc-------------------------------------------------------------------------
Confidence 8776631
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
+..++.++..+.+.|++ ++|++++.++. +.+++.++..||.|.
T Consensus 187 ---------~~~~~~a~~~~~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 229 (229)
T cd04239 187 ---------KVMDATALTLCRRNKIP-IIVFNGLKPGN-LLRALKGEHVGTLIE 229 (229)
T ss_pred ---------CCccHHHHHHHHHCCCe-EEEECCCChhH-HHHHHcCCCCCeEeC
Confidence 12234556667788875 99999999986 467777777899873
No 85
>PRK10514 putative acetyltransferase; Provisional
Probab=99.35 E-value=1.5e-11 Score=108.05 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=82.7
Q ss_pred eEEEECCccCHHHHHHHHHHHHH--cCcCCcCCHHHHHhhc------CcEEEEE-ECCEEEEEEEEeeecCCCeEEEEEE
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRRTDEELLKAL------DSFYVVE-REGQIIACAALFPFFKEKCGEVAAI 348 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~--~~~~~~~~~e~l~~~~------~~~~V~~-~dg~iVG~~~l~~~~~~~~~~I~~v 348 (438)
+.||+++++|.+.+.+++.+... ..+..+.+.+.+...+ ..++++. .++++||++.+.+ .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 57999999999999999987432 1222233343333322 2344554 5799999998852 246689
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 013700 349 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 349 ~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~~ 402 (438)
+|+|+|||||+|++|++++++.++ .+.+.+ +.+.+||+|+||+..+...
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~~~~~-----~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHALSLHP-----ELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EECHHhccCCHHHHHHHHHHHhcc-----ccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 999999999999999999998753 233333 5899999999999987654
No 86
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.33 E-value=4.6e-12 Score=120.39 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHH
Q 013700 70 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEAD 142 (438)
Q Consensus 70 ~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~ 142 (438)
......+++.|.|||+.+.. -.+++|++|+.+|.+|+|++|+|+|||+|++ +++++|++++.+|+.
T Consensus 93 ~~~~~~~l~~g~ipv~~G~~-------~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~ 165 (221)
T TIGR02076 93 FEEALEAMSLGKIVVMGGTH-------PGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELV 165 (221)
T ss_pred HHHHHHHHHcCCEEEEcCCC-------CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHH
Confidence 34445556666666666431 1378999999999999999999999999873 357999999998888
Q ss_pred HHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccch
Q 013700 143 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 222 (438)
Q Consensus 143 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 222 (438)
++..++. ++.|.+
T Consensus 166 ~~~~~~~----------------------------------------------------~~~g~~--------------- 178 (221)
T TIGR02076 166 EIVGSSS----------------------------------------------------VKAGSN--------------- 178 (221)
T ss_pred HHhcCCC----------------------------------------------------ccCCCC---------------
Confidence 8754321 112212
Q ss_pred hhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 223 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|+.|+.++..+.+.|++ ++|++++.|+.++ .++.++..||.|.
T Consensus 179 ------~~~~~~a~~~~~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 179 ------EVVDPLAAKIIERSKIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred ------ceeHHHHHHHHHHCCCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 66788888888888885 9999999998765 4667777899873
No 87
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.31 E-value=1.8e-11 Score=130.92 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=94.9
Q ss_pred ceeEEEEC-CccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEE--CCEEEEEEEEeee----c-CCCeE
Q 013700 276 LYEGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF----F-KEKCG 343 (438)
Q Consensus 276 ~~~~IR~a-t~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~--dg~iVG~~~l~~~----~-~~~~~ 343 (438)
..+.||++ +++|++.|.+++.... ..+++.+.+.... ..++++++ ++++|||+..... . .....
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~----~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~ 156 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARG----MVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGS 156 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcC----CCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCe
Confidence 34789997 6899999999987632 2334444443332 34677775 5899999975421 1 12357
Q ss_pred EEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 344 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 344 ~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
+++.++|+|+|||+|+|++||+.+++++++.|+..+.+.+ ..+++||+|+||+.+...
T Consensus 157 ~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y 218 (547)
T TIGR03103 157 SLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVF 218 (547)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEE
Confidence 8999999999999999999999999999999999999887 578999999999987644
No 88
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.31 E-value=7.7e-12 Score=118.89 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=98.2
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHH
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ 139 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~ 139 (438)
.++.+.+..+|+.|.|||+.... + ++.+|++|+.+|.+|+|++|+|+|||+|++ +++++|++++.+
T Consensus 90 ~~~~~~~~~~l~~g~vpv~~G~~--~-----~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~ 162 (221)
T cd04253 90 PTSYEEALEAMFTGKIVVMGGTE--P-----GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSAD 162 (221)
T ss_pred CCCHHHHHHHHHcCCeEEEECCC--C-----CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHH
Confidence 44678889999999999998652 1 367899999999999999999999999883 248999999998
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
|+.++..... +..|.+
T Consensus 163 e~~~~~~~~~----------------------------------------------------~~~g~~------------ 178 (221)
T cd04253 163 ELIDIVGKSS----------------------------------------------------WKAGSN------------ 178 (221)
T ss_pred HHHHHccCCC----------------------------------------------------cCCCCC------------
Confidence 8888753311 001211
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
|..++.++..+.+.|++ ++|++++.|+. +.+++.++..||.|.
T Consensus 179 ---------~~~d~~a~~~~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I~ 221 (221)
T cd04253 179 ---------EPFDPLAAKIIERSGIK-TIVVDGRDPEN-LERALKGEFVGTIIE 221 (221)
T ss_pred ---------cchHHHHHHHHHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEeC
Confidence 55678888888999986 89999999985 466777778899873
No 89
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.30 E-value=8.6e-12 Score=119.34 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=91.9
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHH
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ 139 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~ 139 (438)
.++.+.|..+|+.|.|||++.. .|.. .+++|++|+.+|.+|+|++|+|+|||+|++ +++++|++++.+
T Consensus 107 ~~~~~~l~~~l~~g~ipV~~g~----~G~~-~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~ 181 (231)
T cd04254 107 PYIRRRAIRHLEKGRVVIFAGG----TGNP-FFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYD 181 (231)
T ss_pred ccCHHHHHHHHHCCCEEEEECC----cCCC-CCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHH
Confidence 5789999999999999999832 2333 458999999999999999999999999873 257899999987
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
|+.+. +.
T Consensus 182 ~~~~~---~~---------------------------------------------------------------------- 188 (231)
T cd04254 182 EVLSK---GL---------------------------------------------------------------------- 188 (231)
T ss_pred HHHhc---ch----------------------------------------------------------------------
Confidence 76442 21
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
..-++.++..|.++|++ ++|+++..|+.| ..++.++..||.|.
T Consensus 189 ---------~~~d~~a~~~a~~~gi~-~~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 189 ---------KVMDATAFTLCRDNNLP-IVVFNINEPGNL-LKAVKGEGVGTLIS 231 (231)
T ss_pred ---------hhhHHHHHHHHHHCCCe-EEEEeCCCccHH-HHHHCCCCCCEEeC
Confidence 01245667777778986 899999999865 45556667899874
No 90
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.30 E-value=5.8e-11 Score=119.03 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=97.1
Q ss_pred CceeEEEECCccCHHHHHHHHHHHHHcCc-CCcCCHHHHHhhcC--cEEEEEE-----CCEEEEEEEEeeecCCCeEEEE
Q 013700 275 DLYEGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD--SFYVVER-----EGQIIACAALFPFFKEKCGEVA 346 (438)
Q Consensus 275 d~~~~IR~at~~D~~~I~~L~~~~~~~~~-~~~~~~e~l~~~~~--~~~V~~~-----dg~iVG~~~l~~~~~~~~~~I~ 346 (438)
++.++||+++++|++.+.+|......-.. ...++.+++...+. ..+++.. ++.+||++.+.. ..+.++|.
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~ 261 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFID 261 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEE
Confidence 45578999999999999999876532221 24567777776652 3444432 567999998763 34678999
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEe
Q 013700 347 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 398 (438)
Q Consensus 347 ~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t------~~a~~fY~k~GF~~~ 398 (438)
.++|+|+|||+|+|++||++++++|++.|++.+++.+ .++++||+++||+..
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 9999999999999999999999999999999888755 479999999999864
No 91
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.29 E-value=1e-11 Score=118.69 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=90.2
Q ss_pred CHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHH
Q 013700 69 DVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEA 141 (438)
Q Consensus 69 ~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~ 141 (438)
+.+.+..+|++|.|||+++.. +.. ..++|.+|+.||.+|+|++|+|+|||+|++ +++++|++++.+|+
T Consensus 109 ~~~~~~~~l~~g~vPVv~g~~----~~~-~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~ 183 (231)
T PRK00358 109 IRRRAIRHLEKGRVVIFAAGT----GNP-FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEV 183 (231)
T ss_pred cHHHHHHHHHCCCEEEEECCC----CCC-CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHH
Confidence 456788999999999997532 222 358999999999999999999999999873 35899999998774
Q ss_pred HHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccccc
Q 013700 142 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 221 (438)
Q Consensus 142 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~ 221 (438)
.++ |.
T Consensus 184 ~~~---g~------------------------------------------------------------------------ 188 (231)
T PRK00358 184 LEK---GL------------------------------------------------------------------------ 188 (231)
T ss_pred HHc---CC------------------------------------------------------------------------
Confidence 443 22
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 222 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
...++.++..|.+.|++ ++|+|+..|+.+ ..++.++..||.|.
T Consensus 189 -------~~~d~~a~~~a~~~~i~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T PRK00358 189 -------KVMDATAISLARDNKIP-IIVFNMNKPGNL-KRVVKGEHIGTLVS 231 (231)
T ss_pred -------cchhHHHHHHHHHcCCc-EEEECCCCchHH-HHHHCCCCCCEEeC
Confidence 12356677777788986 899999999864 56667777899873
No 92
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.28 E-value=4.5e-11 Score=108.19 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=95.5
Q ss_pred CceeEEEECCccCHH--HHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEE---CC----EEEEEEEEeeecCC-
Q 013700 275 DLYEGTRTAKVTDLS--GIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE- 340 (438)
Q Consensus 275 d~~~~IR~at~~D~~--~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~---dg----~iVG~~~l~~~~~~- 340 (438)
.....+|+++..|.+ .+..+....+... .+|+...+...+ ..+++... ++ +++||+........
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~ 86 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR--LPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRP 86 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC--CcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCc
Confidence 455679999999998 6666643333221 567766666554 34556655 33 59999998643332
Q ss_pred ---CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC-CEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 341 ---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-DMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 341 ---~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~-~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
..++|..++|+|+|||+|||++|++.+++.+++.+. ..+.+.+ ..++.||+++||+..+..
T Consensus 87 ~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 87 SADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155 (177)
T ss_pred cccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeee
Confidence 278999999999999999999999999999999886 7888888 589999999999998754
No 93
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=105.22 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=100.5
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEECCEEEEEEEEeeec----CCCeEEEEE
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFF----KEKCGEVAA 347 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~----~~~~~~I~~ 347 (438)
+++.||..++.|++.|.++....+..+- .....+.+.... ...+|+.+++++||++.+.+.. .....-+..
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~~~~-e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaP 80 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFGPGR-EAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAP 80 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhhcch-HHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEe
Confidence 4578999999999999999988776221 111222333222 3578999999999999998753 225667899
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccch
Q 013700 348 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPE 405 (438)
Q Consensus 348 v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~~~lp~ 405 (438)
++|+|+|||||||++|++..++.++..|+..+.+.- ...+|.++||+......++.
T Consensus 81 LaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlG--dp~YY~rfGF~~~~~~~l~~ 136 (171)
T COG3153 81 LAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLG--DPTYYSRFGFEPAAGAKLYA 136 (171)
T ss_pred EEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEec--CcccccccCcEEcccccccc
Confidence 999999999999999999999999999999998864 56899999999998766553
No 94
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.25 E-value=2.7e-10 Score=103.98 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=94.5
Q ss_pred ceeEEEECCccCHHHHHHHHHHH--HHcC---cC-CcCCHHHHHhhcC-----------cEEEEEECCEEEEEEEEeeec
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPL--VESG---AL-VRRTDEELLKALD-----------SFYVVEREGQIIACAALFPFF 338 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~--~~~~---~~-~~~~~e~l~~~~~-----------~~~V~~~dg~iVG~~~l~~~~ 338 (438)
..+.+|+++++|++.+.+++... .... .. .+.+.++..+++. .++++..++++||++.+....
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 34679999999999999998432 1111 11 1234444444331 257777899999999987543
Q ss_pred -CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 339 -KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 339 -~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
....+++ .++++|+|||+|||+++++.+++++.+ .+++++.+.+ .++.++|+|+||+..+..
T Consensus 89 ~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~ 156 (179)
T PRK10151 89 PLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCL 156 (179)
T ss_pred cCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEe
Confidence 3356787 678999999999999999999999965 6899988876 589999999999998864
No 95
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.24 E-value=2e-10 Score=105.58 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=93.4
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcCCcC---CHHHH----Hhhc----CcEEEEEECCEEEEEEEEeeecC-CCeE
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRR---TDEEL----LKAL----DSFYVVEREGQIIACAALFPFFK-EKCG 343 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~---~~e~l----~~~~----~~~~V~~~dg~iVG~~~l~~~~~-~~~~ 343 (438)
..+.+|+++++|++.+.++........+.... ...+. .... ...|++..++++||++.+..... ...+
T Consensus 5 ~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~ 84 (186)
T PRK15130 5 HSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRA 84 (186)
T ss_pred CeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeE
Confidence 34679999999999999997654322222111 11111 1111 34677788999999999875432 3456
Q ss_pred EEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 344 EVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 344 ~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
++ .++|+|+|||+|+|+++++.+++++.+ .++.++.+.+ .++.+||+|+||+..+..
T Consensus 85 ~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~ 146 (186)
T PRK15130 85 EF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGEL 146 (186)
T ss_pred EE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEE
Confidence 66 699999999999999999999999964 7999998877 489999999999998753
No 96
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.23 E-value=1.1e-10 Score=103.45 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=92.2
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcC---CcCCHHHHHhhc--------CcEEEEEECCEEEEEEEEeeecC-CCeEEEE
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLKAL--------DSFYVVEREGQIIACAALFPFFK-EKCGEVA 346 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~---~~~~~e~l~~~~--------~~~~V~~~dg~iVG~~~l~~~~~-~~~~~I~ 346 (438)
.+|+++++|++.+.++........+. ...+.++...++ ..++++..++++||++.+..... ...+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~- 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFW- 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEE-
Confidence 48999999999999998764433222 123433332222 24678888999999999985442 345666
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 347 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 347 ~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
.+++.|.+| +|||+++++.+++++.+ .+++.+.+.+ ..+++||+|+||+..+..
T Consensus 81 g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~ 139 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeee
Confidence 456999999 99999999999999975 7999998877 589999999999998854
No 97
>PRK01346 hypothetical protein; Provisional
Probab=99.23 E-value=1.1e-10 Score=120.75 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=95.0
Q ss_pred CceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc--CcEEEEEECCEEEEEEEEeeec-----C--CCeEEE
Q 013700 275 DLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF-----K--EKCGEV 345 (438)
Q Consensus 275 d~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~--~~~~V~~~dg~iVG~~~l~~~~-----~--~~~~~I 345 (438)
.+.+.||+++.+|++++.+++...+.... .....+.+.... ...+++++++++||++.+.++. . ....+|
T Consensus 4 ~~~~~iR~~~~~D~~~i~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i 82 (411)
T PRK01346 4 DMAITIRTATEEDWPAWFRAAATGFGDSP-SDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGV 82 (411)
T ss_pred CCCceeecCCHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEE
Confidence 35578999999999999999876654322 111112222211 3568888999999999987542 1 146889
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEece
Q 013700 346 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 400 (438)
Q Consensus 346 ~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~ 400 (438)
..++|+|+|||+|+|++||+++++.+++.|+..+.+.+. ...||+|+||.....
T Consensus 83 ~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~-~~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 83 TAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTAS-EGGIYGRFGYGPATY 136 (411)
T ss_pred EEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECC-chhhHhhCCCeeccc
Confidence 999999999999999999999999999999988877763 358999999998753
No 98
>PRK10562 putative acetyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=101.14 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=79.6
Q ss_pred EEECCccCHHHHHHHHHHHHHc--CcCCcC----CHHHHHhhc---CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEE
Q 013700 280 TRTAKVTDLSGIKQIIQPLVES--GALVRR----TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 350 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~--~~~~~~----~~e~l~~~~---~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V 350 (438)
||+++.+|++.+.+++...... .+.... ..+.+.... ..++++..++++||++.+... .++..++|
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~v 76 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-----RFVGALFV 76 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-----cEEEEEEE
Confidence 7999999999999998654221 111100 011111111 245777888999999988632 36778999
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 351 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 351 ~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
+|+|||+|+|++|++++++.+ ..+.+.+ ..+.+||+|+||+.++..
T Consensus 77 ~~~~rg~G~g~~ll~~~~~~~-----~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 77 APKAVRRGIGKALMQHVQQRY-----PHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred CHHHcCCCHHHHHHHHHHhhC-----CeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 999999999999999998754 3344433 589999999999998865
No 99
>PRK08373 aspartate kinase; Validated
Probab=99.21 E-value=1.5e-10 Score=116.37 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=85.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE----eeeCHHHHHHHhcCCceEEEcCcccCCCCCeee
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV----KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLN 98 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v----~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~n 98 (438)
.|+.+|.+ |.-+++.+- +.+... +| ..+| +..+.+.|..+++.|.|||++++..+.+|.+.+
T Consensus 120 ~L~~~Gi~----a~~l~~~~~-i~t~~~--------~~-~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~tt 185 (341)
T PRK08373 120 ALENEGIK----GKVVDPWEI-LEAKGS--------FG-NAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGFRAT 185 (341)
T ss_pred HHHHCCCc----eEEEeHHHh-eeecCC--------cc-ceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEE
Confidence 56677765 887877664 333221 11 1222 346779999999999999999975577888877
Q ss_pred c---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHH
Q 013700 99 C---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 145 (438)
Q Consensus 99 i---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~ 145 (438)
+ ++|.+|+.+|.+|+|++++|+|||+|+. +++++|++|+.+|+.++.
T Consensus 186 LGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 186 LGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 6 8999999999999999999999999883 347899999999999885
No 100
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.20 E-value=5.5e-10 Score=109.94 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=93.2
Q ss_pred ceeEEEECCc-cCHHHHHHHHHHHHHcCcC-CcCCHHHHHhhc-------CcEEEEEE--CCEEEEEEEEeeec-CCCeE
Q 013700 276 LYEGTRTAKV-TDLSGIKQIIQPLVESGAL-VRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFF-KEKCG 343 (438)
Q Consensus 276 ~~~~IR~at~-~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~~-------~~~~V~~~--dg~iVG~~~l~~~~-~~~~~ 343 (438)
.-+.+|+++. .|.+.+.++....+..... ..++.+.+.... ..++++.+ ++++|||+.+.... .....
T Consensus 148 ~g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~ 227 (292)
T TIGR03448 148 DGVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALG 227 (292)
T ss_pred CCeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCcee
Confidence 3467899864 5888888887666544322 345555554321 23566666 58999997655332 23456
Q ss_pred EEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 344 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 344 ~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
++..++|+|+|||||+|++|++.+++++++.|+..+.+.+ ..+.+||+|+||+..+.
T Consensus 228 ~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 228 EVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 7878999999999999999999999999999999988877 47899999999998654
No 101
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.18 E-value=5.5e-10 Score=109.97 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=86.3
Q ss_pred EECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc-------CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECcc
Q 013700 281 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 353 (438)
Q Consensus 281 R~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~-------~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~ 353 (438)
.+++++|+++|.+|+..........+++.+.. ..+ ...+++.+++++|||+.+.+.. ....++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-~~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPAR-GTDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCC-CCcceEEEEEECHh
Confidence 36788999999999987766543445555443 332 2367788899999999987543 23467889999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 354 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 354 yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
|||+|||++||+++++.+. ..+.+.+ ..+++||+++||+....
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred hcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 9999999999999999874 2333333 47899999999998763
No 102
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.18 E-value=8.4e-11 Score=112.51 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=92.1
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHH
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQ 139 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~ 139 (438)
..+.+.|..+|+.|.|||++... | .-.+++|.+|+.+|..|+|+.|+++|||+|++ +++++|++++.+
T Consensus 105 ~~~~~~i~~ll~~g~vpV~~G~~----~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~ 179 (231)
T PRK14558 105 PINYDDIELYFRAGYIVIFAGGT----S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFS 179 (231)
T ss_pred hhhHHHHHHHHHCCCEEEEECCC----C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHH
Confidence 45689999999999999998752 1 22457899999999999999999999999883 358999999987
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
|+.++ +.. .
T Consensus 180 e~~~~---g~~--------------------------------------------------------~------------ 188 (231)
T PRK14558 180 EAIKM---GLK--------------------------------------------------------V------------ 188 (231)
T ss_pred HHHHc---Ccc--------------------------------------------------------c------------
Confidence 76654 210 0
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
| +..++.-|.++|++ ++|+|+..++.+. .++.++..||.|.+
T Consensus 189 ---------~--d~~a~~~a~~~gi~-v~I~ng~~~~~l~-~~l~g~~~GT~i~~ 230 (231)
T PRK14558 189 ---------M--DTEAFSICKKYGIT-ILVINFFEPGNLL-KALKGENVGTLVVP 230 (231)
T ss_pred ---------c--cHHHHHHHHHCCCC-EEEEeCCCCCHHH-HHHCCCCCcEEeCC
Confidence 2 24456667788997 9999999888654 55566778999865
No 103
>PHA01807 hypothetical protein
Probab=99.18 E-value=5.6e-10 Score=99.98 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=82.1
Q ss_pred ECCccCHHHHHHHHHHHHHcCcCC-cC-C-H---HHHHhhc----CcEEEEEECCEEEEEEEEeeecCCCeEE---EEEE
Q 013700 282 TAKVTDLSGIKQIIQPLVESGALV-RR-T-D---EELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGE---VAAI 348 (438)
Q Consensus 282 ~at~~D~~~I~~L~~~~~~~~~~~-~~-~-~---e~l~~~~----~~~~V~~~dg~iVG~~~l~~~~~~~~~~---I~~v 348 (438)
.++.+|+..+..+......+.... +| + . +.+.... ...++++.++++|||+.+.+.......+ +..+
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 467789999999987765443211 11 1 1 2222211 2357788899999999987544332333 4457
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHC
Q 013700 349 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 393 (438)
Q Consensus 349 ~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~ 393 (438)
+|+|+|||+|+|++||+.++++|++.|+..+.+.+ .++.+||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 99999999999999999999999999999998888 4899999983
No 104
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.17 E-value=2.6e-10 Score=97.48 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=95.2
Q ss_pred eEEEECCccCHHH-HHHHHHHHHHcCcCCcCCHHHHHhhc-------C-cEEE-EEE--CCEEEEEEEEeee-----cCC
Q 013700 278 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------D-SFYV-VER--EGQIIACAALFPF-----FKE 340 (438)
Q Consensus 278 ~~IR~at~~D~~~-I~~L~~~~~~~~~~~~~~~e~l~~~~-------~-~~~V-~~~--dg~iVG~~~l~~~-----~~~ 340 (438)
+.+|++..+|+.. ..+++.++-..+.. ++++|...+ . ++.+ +++ .++++|.+.+... .-.
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~v---t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVV---TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhcccc---CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 6899999999996 88888888777654 344444332 2 3333 333 3789999988632 123
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
..++|..+.|+++||||++|+.|++.+...++..||..+.+.| +....||+|+||...+
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAG 143 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccc
Confidence 6778999999999999999999999999999999999999999 6889999999999765
No 105
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.15 E-value=2.5e-10 Score=118.63 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=98.7
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHH-HHHHhcCCceEEEcCc-ccCCCCCeeec-
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTR-MRERLDGGCLVILSNL-GYSSSGEVLNC- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~-i~~ll~~g~IPVi~~i-~~~~~g~~~ni- 99 (438)
.|+..|.+ |.-+++.+.++++....+ ..+|...+.+. |..+++.+.|||++++ |.+++|++..+
T Consensus 129 ~L~~~Gv~----A~~~~~~~~~i~t~~~~~---------~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLG 195 (447)
T COG0527 129 ALNALGVD----ARSLDGRQAGIATDSNHG---------NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLG 195 (447)
T ss_pred HHHhCCCc----eEEEchHHceeeecCccc---------ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeC
Confidence 67777875 999999999998865433 55666677777 9999999999999997 99999999888
Q ss_pred --ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 100 --NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 100 --naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
.+|..|+.||.+|+||.+.+.|||+|+ | |+.++|+.||++|+.+|...|.
T Consensus 196 RGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GA 254 (447)
T COG0527 196 RGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGA 254 (447)
T ss_pred CCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCc
Confidence 589999999999999999999999998 4 4699999999999999977664
No 106
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.15 E-value=1.1e-09 Score=95.25 Aligned_cols=118 Identities=20% Similarity=0.265 Sum_probs=87.9
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCc---CCc-CCHHHHHhhcC-----------cEEEEEE-C-CEEEEEEEEee-ecC
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGA---LVR-RTDEELLKALD-----------SFYVVER-E-GQIIACAALFP-FFK 339 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~---~~~-~~~e~l~~~~~-----------~~~V~~~-d-g~iVG~~~l~~-~~~ 339 (438)
+.||+++++|++.+.++........+ ... .+.+...+++. .+|++.. + +++||++.+.. ...
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 57999999999999999863322222 111 25555443331 1345554 3 47999999943 345
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHHCCCe
Q 013700 340 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFR 396 (438)
Q Consensus 340 ~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a-~~~g~~~l~l~t----~~a~~fY~k~GF~ 396 (438)
...+++ .+.|.|+|||+|+|+.++..+++++ ++.++.++.+.+ .++.++++|+||+
T Consensus 82 ~~~~ei-g~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEI-GYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCcccc-ccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 688998 5999999999999999999999999 679999999888 5899999999996
No 107
>PRK13688 hypothetical protein; Provisional
Probab=99.12 E-value=3.1e-10 Score=102.02 Aligned_cols=107 Identities=19% Similarity=0.344 Sum_probs=77.4
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeec---------CCCeEEEEEE
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAAI 348 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~---------~~~~~~I~~v 348 (438)
-+||++..+|++.+.++....+... .-..++++++++++||++.+.... ..+.++|..+
T Consensus 18 ~~~~~~~~~dl~~l~~l~~~~f~~~------------~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l 85 (156)
T PRK13688 18 KKFREFGNQELSMLEELQANIIEND------------SESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKL 85 (156)
T ss_pred HHHHHhcHHHHHHHHhhhhhEeecC------------CCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEE
Confidence 3467788888888888854433211 123567888899999998875321 2356799999
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 349 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 349 ~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
+|+|+|||||||++|++++. +.++. +.+.. +.+.+||+|+||+..+..
T Consensus 86 ~V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 86 EVLPKYQNRGYGEMLVDFAK----SFQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EECHHHcCCCHHHHHHHHHH----HhCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 99999999999999998644 44444 33322 568899999999998765
No 108
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.12 E-value=3.4e-10 Score=111.92 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=67.3
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeE
Q 013700 319 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRE 397 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~ 397 (438)
+++..+++++|||+.+.. .+|..++|+|+|||+|+|++||+++++++++.|++.+++.+ +.+..||+|+||+.
T Consensus 8 ~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~ 81 (297)
T cd02169 8 VGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFKE 81 (297)
T ss_pred EEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCEE
Confidence 566677899999998862 26899999999999999999999999999999999999998 45789999999998
Q ss_pred ec
Q 013700 398 CS 399 (438)
Q Consensus 398 ~g 399 (438)
.+
T Consensus 82 ~~ 83 (297)
T cd02169 82 LA 83 (297)
T ss_pred ec
Confidence 88
No 109
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.11 E-value=2.3e-09 Score=99.25 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=89.0
Q ss_pred eEEEECCccCHHHHHHHHHHHHH--cCcCCcC-----CHHH-------HHhhc----CcEEEEEE--CCEEEEEEEEeee
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRR-----TDEE-------LLKAL----DSFYVVER--EGQIIACAALFPF 337 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~--~~~~~~~-----~~e~-------l~~~~----~~~~V~~~--dg~iVG~~~l~~~ 337 (438)
+.||+++++|.+.+.+++..... ....... ..+. +.... ...|++.. ++++||++.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 57999999999999999875221 1111100 0111 11111 12455543 5799999998754
Q ss_pred cC--CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 338 FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 338 ~~--~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
.. ...+++ .+.|+|+|||||+|+.+++.+++++.+ .|++++.+.+ .+|.++|+|+||+..+..
T Consensus 98 ~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 98 VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 32 134566 688999999999999999999999976 6999999988 589999999999987754
No 110
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.08 E-value=1.2e-09 Score=107.94 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=85.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE-eeeCHHHHHHHhcC-CceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v-~~v~~~~i~~ll~~-g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|++.|.+ |.-+.+.+- +++....+ ....+|+ ..+| .....+.|...+.. +.|||++++ |.+++|++..+
T Consensus 129 ~L~~~Gi~----a~~ld~~~~-i~~~~~~~-~~~~~~~-~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttL 201 (295)
T cd04259 129 YLEAQGLK----VKWLDAREL-LTATPTLG-GETMNYL-SARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLL 201 (295)
T ss_pred HHHhCCCC----eEEEcHHHh-eeeccccc-ccccccc-cceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEE
Confidence 67777775 777776664 22211111 0001111 1233 23345667766665 679999997 88999998887
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCcccccCCHHHHHHHHHhh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|++++++|||+|++ | ++++|++|+.+|+.++...|
T Consensus 202 GrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~G 260 (295)
T cd04259 202 GRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMG 260 (295)
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcC
Confidence 6899999999999999999999999883 3 57999999999999997654
No 111
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.07 E-value=6.3e-10 Score=106.61 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=89.7
Q ss_pred eCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEec-Ccccc-------CCCcccccCCHH
Q 013700 68 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQ 139 (438)
Q Consensus 68 v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltd-v~g~~-------~~~~~i~~l~~~ 139 (438)
.+.+.++.+|++|.|||++.. .|. ..+++|.+|+.+|..|+||.|+|+|| |+|++ +++++|++++.+
T Consensus 109 ~~~~~i~~ll~~g~VpV~~g~----~g~-~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~ 183 (233)
T TIGR02075 109 YIRRKAIKHLEKGKVVIFSGG----TGN-PFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYN 183 (233)
T ss_pred cCHHHHHHHHHCCCEEEEECC----CCC-CCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHH
Confidence 347899999999999998743 122 35789999999999999999999999 99883 347899999987
Q ss_pred HHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCccccccccccc
Q 013700 140 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 219 (438)
Q Consensus 140 e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 219 (438)
|+.+. +.
T Consensus 184 e~~~~---~~---------------------------------------------------------------------- 190 (233)
T TIGR02075 184 EALKK---NL---------------------------------------------------------------------- 190 (233)
T ss_pred HHHhc---CH----------------------------------------------------------------------
Confidence 75442 21
Q ss_pred cchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCccccc
Q 013700 220 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 273 (438)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~ 273 (438)
...++.++..|.+.|++ ++|+|+..++.| ..++.++..||.|.
T Consensus 191 ---------~~~d~~~~~~a~~~~i~-v~i~~g~~~~~l-~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 191 ---------KVMDLTAFALARDNNLP-IVVFNIDEPGAL-KKVILGKGIGTLVS 233 (233)
T ss_pred ---------HHHHHHHHHHHHHCCCe-EEEEeCCCcchH-HHHHCCCCCCEEeC
Confidence 01245566777788986 899999988865 45556677899874
No 112
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.04 E-value=2.6e-09 Score=105.22 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=93.8
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|++.|.+ |.-+++.+-++++....+ ...+.....+.+..+++.+.|||++++ |.+.+|++..+
T Consensus 130 ~L~~~Gi~----a~~ld~~~~~i~t~~~~~---------~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgR 196 (288)
T cd04245 130 YLNYQGID----ARYVIPKDAGLVVTDEPG---------NAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSR 196 (288)
T ss_pred HHHHCCCC----eEEEcHHHCceeecCCcc---------ccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCC
Confidence 56777765 888888887777654432 233444578889999999999999987 88999999999
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
.+|..|+.+|.+|+|+.+.+.|||+|+ | ++.+.|++||++|+.++...|.
T Consensus 197 ggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~Ga 254 (288)
T cd04245 197 GGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGF 254 (288)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCC
Confidence 899999999999999999999999988 3 4589999999999999975543
No 113
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.02 E-value=2.4e-09 Score=107.00 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=68.9
Q ss_pred eeCHHHHHHHhcCCceEEEcCcccCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccC
Q 013700 67 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 136 (438)
Q Consensus 67 ~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l 136 (438)
..+.+.+..+++.|.|||++++..+.+|...++ ++|.+|+.+|.+|+|+.++++|||+|+. ++.++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 567889999999999999998754778887776 7999999999999999999999999883 346799999
Q ss_pred CHHHHHHHH
Q 013700 137 TLQEADSLI 145 (438)
Q Consensus 137 ~~~e~~~l~ 145 (438)
+.+|+.++.
T Consensus 224 sy~Ea~ela 232 (327)
T TIGR02078 224 SYEEIKIAA 232 (327)
T ss_pred CHHHHHHHH
Confidence 999988764
No 114
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.01 E-value=8.4e-09 Score=103.59 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=71.3
Q ss_pred hcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHC
Q 013700 315 ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSR 393 (438)
Q Consensus 315 ~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~ 393 (438)
.+..++++++++++|||+.+.. ..|.+++|+|+|||+|+|++|++++++++++.|+..+++.| +...+||+++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEYC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHc
Confidence 3456788889999999999852 15889999999999999999999999999999999999999 4567899999
Q ss_pred CCeEecee
Q 013700 394 GFRECSIE 401 (438)
Q Consensus 394 GF~~~g~~ 401 (438)
||.+....
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99998754
No 115
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.00 E-value=2.7e-09 Score=105.47 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeC-HHHHHHHhcC-CceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG-GCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~-~~~i~~ll~~-g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|++.|.+ |.-++..+. +++... ++. ..+.... .+.++.+++. +.|||++++ +.+..|++.++
T Consensus 134 ~L~~~Gi~----a~~ld~~~~-i~t~~~--------~~~-~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttL 199 (293)
T cd04243 134 YLQEQGLP----AAWLDAREL-LLTDDG--------FLN-AVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTL 199 (293)
T ss_pred HHHhCCCC----cEEEcHHHe-EEecCC--------CCc-chhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEe
Confidence 67777775 777877653 333211 111 1111111 4578888887 899999986 88889999988
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhhh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
++|.+|+.+|.+|+|++++++|||+|++ +++++|++++.+|+.++...|.
T Consensus 200 GRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Ga 259 (293)
T cd04243 200 GRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGA 259 (293)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCC
Confidence 4899999999999999999999999883 3589999999999999976553
No 116
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.99 E-value=2.8e-10 Score=99.68 Aligned_cols=140 Identities=18% Similarity=0.199 Sum_probs=106.3
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEE-ECCEEEEEEEEeeec----CCCeEEEEEEEECc
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSP 352 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~-~dg~iVG~~~l~~~~----~~~~~~I~~v~V~p 352 (438)
+.||.++.+|+-.+..+.-...++.+......-....|.+..||++ .+|+|||++...-.. ++..++|..++|..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 4689999999888777755455555555545555666777889998 579999999876443 34688999999999
Q ss_pred cccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHH-HCCCeEeceeccchHhhhhhcCCCCceEEEEcc
Q 013700 353 ECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFK-SRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 424 (438)
Q Consensus 353 ~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~-k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~l 424 (438)
.||+.|+|++||....+-..+ .+.+.+.+.+ ..+..+|+ -+||++++.+. .|..+..+.+-|++.
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~-------kYYadGedAyaM~~~ 152 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEP-------KYYADGEDAYAMRKD 152 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeeccc-------ccccccHHHHHHHHH
Confidence 999999999999998877754 6788888887 36899999 69999988662 344445555555543
No 117
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=98.97 E-value=4.8e-09 Score=103.78 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=86.1
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEee-eCHHHHHHHhcC-CceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK-VDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~-v~~~~i~~ll~~-g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|++.|.+ |.-+.+.+. +++... ++ ...+.. ...+.|+.++.. +.|||++++ +.+.+|++..+
T Consensus 135 ~L~~~Gi~----a~~ld~~~~-i~t~~~--------~~-~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttl 200 (294)
T cd04257 135 LLNQQGLD----AAWIDAREL-IVTDGG--------YL-NAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTL 200 (294)
T ss_pred HHHhCCCC----eEEEchHHe-eEecCC--------CC-ceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEEC
Confidence 57777775 888888773 444221 22 233332 336788887777 899999987 77888998877
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
.+|.+|+.+|..|+|+.++++|||+|++ +++++|+.|+.+|+.++...|
T Consensus 201 GRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~G 259 (294)
T cd04257 201 GRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFG 259 (294)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCC
Confidence 4899999999999999999999999873 357899999999999996544
No 118
>PRK14557 pyrH uridylate kinase; Provisional
Probab=98.91 E-value=5.3e-09 Score=100.94 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=91.2
Q ss_pred eeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeecChHHHHHHHHHHcCCCEEEEE-ecCcccc-------CCCcccccC
Q 013700 66 KKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPILD-------ESGHLIRFL 136 (438)
Q Consensus 66 ~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ninaD~~A~~lA~aL~A~~li~l-tdv~g~~-------~~~~~i~~l 136 (438)
..++...+...|++|.|||++.. +. -.+.+|++|+.+|.+++||.|+++ |||+|++ +++++|+++
T Consensus 111 ~~~~~~~~~~~l~~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i 184 (247)
T PRK14557 111 EPYIRLRAVHHLDNGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKL 184 (247)
T ss_pred chhhHHHHHHHHhCCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEE
Confidence 34555567777999999999864 32 245699999999999999999999 5999883 358999999
Q ss_pred CHHHHHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccccc
Q 013700 137 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 216 (438)
Q Consensus 137 ~~~e~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 216 (438)
+..|+. ..+. ++
T Consensus 185 ~~~e~~---~~~~---~~-------------------------------------------------------------- 196 (247)
T PRK14557 185 NYNDVV---RQNI---QV-------------------------------------------------------------- 196 (247)
T ss_pred Chhhhc---ccCH---HH--------------------------------------------------------------
Confidence 977652 1211 00
Q ss_pred ccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccCCce
Q 013700 217 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY 277 (438)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~d~~ 277 (438)
|- ..++..|.+.|++ ++|+|++.|+.| ..++.++..||.|.+...
T Consensus 197 ------------~~--~~A~~~a~~~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 197 ------------MD--QAALLLARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLINDDAS 241 (247)
T ss_pred ------------HH--HHHHHHHHHCCCc-EEEEeCCCChHH-HHHHcCCCCcEEEecCcc
Confidence 21 2466778888996 999999999854 566677888999986543
No 119
>PRK05925 aspartate kinase; Provisional
Probab=98.84 E-value=1.3e-08 Score=106.07 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=82.8
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE--eeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV--KKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v--~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|++.|.+ |.-+.+.+- +++.... + ..++ ..+........++.+.|||++++ |.+++|++..+
T Consensus 120 ~L~~~Gi~----a~~ld~~~~-i~t~~~~--------~-~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttL 185 (440)
T PRK05925 120 YCCTYVLP----LEFLEARQV-ILTDDQY--------L-RAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVL 185 (440)
T ss_pred HHHhCCCC----eEEEcHHHh-EeecCCc--------c-ccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEe
Confidence 56666764 777776654 4443221 1 1222 22334444446678889999997 99999998877
Q ss_pred ---ChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 ---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 ---naD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
++|.+|+.+|.+|+|+.++++|||+|++ +++++|++++.+|+.++...|
T Consensus 186 grGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~G 244 (440)
T PRK05925 186 GRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFG 244 (440)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCC
Confidence 7999999999999999999999999883 357899999999999986544
No 120
>PRK09034 aspartate kinase; Reviewed
Probab=98.81 E-value=4.2e-08 Score=102.89 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=92.2
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHhcCCceEEEcCc-ccCCCCCeeec--
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~~ni-- 99 (438)
.|++.|.+ |.-+++.+-++++.... + ...+.....+.+..++..+.|||++++ |.+.+|++..+
T Consensus 130 ~L~~~g~~----a~~~~~~~~~~~t~~~~--------~-~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgR 196 (454)
T PRK09034 130 YLNYEGIP----ARYVDPKEAGIIVTDEP--------G-NAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSR 196 (454)
T ss_pred HHHhCCCC----cEEEchHHceEEecCCc--------C-ceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCC
Confidence 56677765 88888888777764332 2 234445567888888888889999997 88999999888
Q ss_pred -ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 100 -NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 100 -naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
.+|..|+.+|.+|+|+.+.+.|||+|+ | ++.+++++||.+|+.+|...|.
T Consensus 197 ggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Ga 254 (454)
T PRK09034 197 GGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGF 254 (454)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCc
Confidence 589999999999999999999999988 3 4689999999999999976554
No 121
>PRK09084 aspartate kinase III; Validated
Probab=98.78 E-value=4.1e-08 Score=102.77 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=84.7
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE-----eeeCHHHHHHHhcCCceEEEcCc-ccCCCCCe
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-----KKVDVTRMRERLDGGCLVILSNL-GYSSSGEV 96 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v-----~~v~~~~i~~ll~~g~IPVi~~i-~~~~~g~~ 96 (438)
.|+++|.+ |.-+.+.+- +++... |+ .+++ ...-.+.+..+++.+ |||++++ |.++.|++
T Consensus 127 ~L~~~Gi~----a~~l~~~~~-i~t~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ 191 (448)
T PRK09084 127 LLRERGVQ----AEWFDVRKV-MRTDDR--------FG-RAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRT 191 (448)
T ss_pred HHHhCCCC----cEEEchHHe-EEecCC--------CC-cccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCE
Confidence 67777775 888887774 444322 11 1222 111225666778888 9999986 88999999
Q ss_pred eec---ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhh
Q 013700 97 LNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 97 ~ni---naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g 148 (438)
..+ .+|..|+.+|..|+|+.++++|||+|+ | +++++|++|+++|+.++...|
T Consensus 192 ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~G 253 (448)
T PRK09084 192 TTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFG 253 (448)
T ss_pred eecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCC
Confidence 988 899999999999999999999999987 3 458999999999999996554
No 122
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.77 E-value=5.2e-08 Score=84.59 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=73.0
Q ss_pred hhcCcEEEEEECCEEEEEEEEeeec-CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC-CCEEEEEc-HHHHHHH
Q 013700 314 KALDSFYVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTADWF 390 (438)
Q Consensus 314 ~~~~~~~V~~~dg~iVG~~~l~~~~-~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g-~~~l~l~t-~~a~~fY 390 (438)
....+.++...|+++++|+.+.+.. ......|+.+.|+|++||+|+|.+||+.+++.+.+.. -+.+++.. ...+.||
T Consensus 47 ~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fY 126 (155)
T COG2153 47 GDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFY 126 (155)
T ss_pred cccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHH
Confidence 4446777777799999999998632 2234679999999999999999999999999997654 55677776 4679999
Q ss_pred HHCCCeEeceecc
Q 013700 391 KSRGFRECSIEMI 403 (438)
Q Consensus 391 ~k~GF~~~g~~~l 403 (438)
.++||+.++...+
T Consensus 127 a~~GFv~~~e~yl 139 (155)
T COG2153 127 ASFGFVRVGEEYL 139 (155)
T ss_pred HHhCcEEcCchhh
Confidence 9999999986643
No 123
>PRK14556 pyrH uridylate kinase; Provisional
Probab=98.76 E-value=3e-08 Score=95.26 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=87.3
Q ss_pred eCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHH
Q 013700 68 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE 140 (438)
Q Consensus 68 v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e 140 (438)
.+.+.+...|+.|.|||++... | .-.+.+|++|+.+|..++||.|+++|||+|++ ++++++++++..|
T Consensus 124 ~~~~~~~~~l~~g~vvi~~gg~----G-~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e 198 (249)
T PRK14556 124 ASAHEFNQELAKGRVLIFAGGT----G-NPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSE 198 (249)
T ss_pred CCHHHHHHHHhCCCEEEEECCC----C-CCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhh
Confidence 3778888899999999976431 1 12456899999999999999999999999983 3478888888766
Q ss_pred HHHHHHhhhhhhhHHHhHhhhhhcccccccCCCCCCccccccCCCCccchhhhccccCCCccCCCCCCcccccccccccc
Q 013700 141 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 220 (438)
Q Consensus 141 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~ 220 (438)
.... +.
T Consensus 199 ~~~~---~l----------------------------------------------------------------------- 204 (249)
T PRK14556 199 VVSK---EL----------------------------------------------------------------------- 204 (249)
T ss_pred hccc---ch-----------------------------------------------------------------------
Confidence 4331 11
Q ss_pred chhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeehhhcCCCcccccC
Q 013700 221 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274 (438)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~g~~~~~ll~el~~~~g~GT~i~~ 274 (438)
-..+..++..|.++|++ ++|+|++.++.| ..++.++..||.|..
T Consensus 205 --------~vmd~~A~~~a~~~gIp-i~I~ng~~~~~L-~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 205 --------NVMDLGAFTQCRDFGIP-IYVFDLTQPNAL-VDAVLDSKYGTWVTL 248 (249)
T ss_pred --------HhHHHHHHHHHHHCCCc-EEEECCCCchHH-HHHHcCCCCceEEEe
Confidence 01123456667788997 899999999865 455567778999864
No 124
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=98.74 E-value=7.5e-08 Score=95.07 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=81.0
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeC-----HHHHHHHhcCCceEEEcCc-ccCCCCCe
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-----VTRMRERLDGGCLVILSNL-GYSSSGEV 96 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~-----~~~i~~ll~~g~IPVi~~i-~~~~~g~~ 96 (438)
.|+++|.+ |.-+++.+- +++... ++ ..++.... ...++.+ ..+.|||++++ |.+.+|++
T Consensus 131 ~L~~~Gi~----a~~ld~~~~-i~t~~~--------~~-~a~~~~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~G~~ 195 (292)
T cd04258 131 ALREQGVP----AEWFDVRTV-LRTDSR--------FG-RAAPDLNALAELAAKLLKPL-LAGTVVVTQGFIGSTEKGRT 195 (292)
T ss_pred HHHhCCCC----eEEEchHHe-EEecCC--------Cc-cccccHHHHHHHHHHHHHHh-hcCCEEEECCccccCCCCCE
Confidence 56677765 777777665 444221 22 12221111 1223333 45689999986 88889998
Q ss_pred eec---ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 97 LNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 97 ~ni---naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
..+ ++|..|+.+|.+|+|+.++++|||+|+ | +++++|+.|+++|+.++...|.
T Consensus 196 ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Ga 258 (292)
T cd04258 196 TTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGA 258 (292)
T ss_pred EecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCC
Confidence 876 689999999999999999999999987 3 3489999999999999976553
No 125
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.73 E-value=1.3e-07 Score=76.47 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=48.3
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE-Ec--HHHHHHHHHCCCeEecee
Q 013700 343 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL-LT--TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 343 ~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l-~t--~~a~~fY~k~GF~~~g~~ 401 (438)
+.|..++|+|+|||+|+|+.|+..+.+.+.+.|...... .. ..|+++|+|+||+.....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 789999999999999999999999999998888765322 22 589999999999998643
No 126
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.71 E-value=9.2e-08 Score=107.80 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=69.8
Q ss_pred eCHHHHHHHhcCC-ceEEEcCc-ccCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCcccc---C----CCccccc
Q 013700 68 VDVTRMRERLDGG-CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRF 135 (438)
Q Consensus 68 v~~~~i~~ll~~g-~IPVi~~i-~~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~~---~----~~~~i~~ 135 (438)
.+...++.+++.+ .|||++++ |.+.+|++..+ ++|.+|+.+|.+|+|++++++|||+|+. | +.++|++
T Consensus 177 ~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ 256 (861)
T PRK08961 177 SDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTR 256 (861)
T ss_pred hHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecc
Confidence 4667888888776 49999987 88999998877 7899999999999999999999999873 3 5689999
Q ss_pred CCHHHHHHHHHhh
Q 013700 136 LTLQEADSLIRQR 148 (438)
Q Consensus 136 l~~~e~~~l~~~g 148 (438)
|+.+|+.++...|
T Consensus 257 ls~~e~~el~~~g 269 (861)
T PRK08961 257 LDYDEAQEIATTG 269 (861)
T ss_pred cCHHHHHHHHHCC
Confidence 9999999997544
No 127
>PLN02551 aspartokinase
Probab=98.68 E-value=1.2e-07 Score=100.67 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=89.5
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeEeeeCHHHHHHHh-----cCCceEEEcCc-ccC-CCCC
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL-----DGGCLVILSNL-GYS-SSGE 95 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v~~v~~~~i~~ll-----~~g~IPVi~~i-~~~-~~g~ 95 (438)
.|++.|.+ |.-+.+.+-++++....+ ..+|.....+.|...+ +.+.|||++++ |.+ .+|+
T Consensus 183 ~L~~~Gi~----a~~lda~~~gi~t~~~~~---------~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~ 249 (521)
T PLN02551 183 YLNKIGVK----ARQYDAFDIGFITTDDFT---------NADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGA 249 (521)
T ss_pred HHHHCCCC----cEEechHHcceEecCCCC---------ccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCc
Confidence 56777765 888888888888744322 2334444555555444 45689999997 888 8999
Q ss_pred eeec---ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 96 VLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 96 ~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
+..+ .+|..|+.+|.+|+|+.+.+.|||+|+ | ++.++|++||++|+.+|..-|.
T Consensus 250 ~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~Ga 313 (521)
T PLN02551 250 ITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGA 313 (521)
T ss_pred EEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCC
Confidence 9988 589999999999999999999999988 4 4589999999999999976654
No 128
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.68 E-value=1.2e-07 Score=105.99 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=82.2
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE-eeeCHHHHHHHh-cCCceEEEcCc-ccCCCCCeeec
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERL-DGGCLVILSNL-GYSSSGEVLNC 99 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v-~~v~~~~i~~ll-~~g~IPVi~~i-~~~~~g~~~ni 99 (438)
.|++.|.+ |.-++..+- +++.. .|+ ..++ .....+.|+.++ +.+.|||++++ +.+.+|++..+
T Consensus 137 ~L~~~Gi~----a~~ld~~~~-i~t~~--------~~~-~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttl 202 (819)
T PRK09436 137 VLEARGHD----VTVIDPREL-LLADG--------HYL-ESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTL 202 (819)
T ss_pred HHHhCCCC----eEEECHHHe-EEecC--------CCC-CceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEe
Confidence 56677765 777776553 33321 122 1222 122345566554 56889999987 88889999988
Q ss_pred C---hHHHHHHHHHHcCCCEEEEEecCcccc-------CCCcccccCCHHHHHHHHHhh
Q 013700 100 N---TYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 148 (438)
Q Consensus 100 n---aD~~A~~lA~aL~A~~li~ltdv~g~~-------~~~~~i~~l~~~e~~~l~~~g 148 (438)
. +|..|+.+|..|+|+.++++|||+|++ ++.++|++++.+|+.++...|
T Consensus 203 GRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G 261 (819)
T PRK09436 203 GRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFG 261 (819)
T ss_pred CCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcC
Confidence 6 899999999999999999999999883 457899999999999996443
No 129
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=85.55 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=85.6
Q ss_pred cCHHHHHHHHHHHH-----HcCcC-Cc-CCHHHHHhhcCcEEEEEECC-EEEEEEEEeeecCCC--eEEEEEEEECcccc
Q 013700 286 TDLSGIKQIIQPLV-----ESGAL-VR-RTDEELLKALDSFYVVEREG-QIIACAALFPFFKEK--CGEVAAIGVSPECR 355 (438)
Q Consensus 286 ~D~~~I~~L~~~~~-----~~~~~-~~-~~~e~l~~~~~~~~V~~~dg-~iVG~~~l~~~~~~~--~~~I~~v~V~p~yR 355 (438)
+|++-..+|+..-. +..+. .+ ...+++......++++..++ ++|||..+....+.+ ..++..+-|.+.||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 66666667765521 11111 11 12344444446677777776 899999998655544 67788888999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 356 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 356 gqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
|+|||+.||+.++..+.....+.|.+.+ .++..||.++||......
T Consensus 134 ~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~s 183 (202)
T KOG2488|consen 134 GKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEES 183 (202)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCC
Confidence 9999999999999999888888777776 589999999999986544
No 130
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=83.75 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=70.0
Q ss_pred EEECCEEEEEEEEeeec-CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEece
Q 013700 322 VEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 400 (438)
Q Consensus 322 ~~~dg~iVG~~~l~~~~-~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~ 400 (438)
-+...+++|...+.+.. ......+..+.|+.++||+|+|+.||+.++.||+..|.+.+++.|..-.+||+++||+.+..
T Consensus 62 ~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 62 NEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESLGYEKCDP 141 (225)
T ss_pred cccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhhcccccCc
Confidence 34567899999998754 34678899999999999999999999999999999999999999976689999999998864
No 131
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=98.63 E-value=3.4e-07 Score=90.97 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=62.7
Q ss_pred CCceEEEcCc-ccCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHh
Q 013700 79 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 147 (438)
Q Consensus 79 ~g~IPVi~~i-~~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~ 147 (438)
.+.|||++++ |.+++|++..+ .+|..|+.+|..|+|+.++++|||+|+ | +++++|++|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5679999997 88888999888 589999999999999999999999988 3 35789999999999999765
Q ss_pred hh
Q 013700 148 RV 149 (438)
Q Consensus 148 g~ 149 (438)
|.
T Consensus 269 Ga 270 (306)
T cd04247 269 GS 270 (306)
T ss_pred cC
Confidence 53
No 132
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.62 E-value=5.7e-08 Score=89.07 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=88.6
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCC---------CeEEEEE
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKE---------KCGEVAA 347 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~---------~~~~I~~ 347 (438)
.+.++..++.++..+..|.++.++..+...+..+.+ ......-++..++..+|-.+....... ...+|..
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~-~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~ 94 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVL-SNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILS 94 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHH-hcCCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEe
Confidence 468999999999999999877766655433222222 111222234444555554444322111 1378999
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCC-CCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 348 IGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 348 v~V~p~yRgqGiG~~Ll~~l~~~a~~~g-~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
+.|.|.||.+|||++|++++.++|.+.. ++.+++.+ ..+..||+++||+.+...
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~ 153 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERL 153 (187)
T ss_pred ecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeecc
Confidence 9999999999999999999999998877 88888877 468999999999998743
No 133
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.61 E-value=2.6e-07 Score=88.07 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=65.1
Q ss_pred EEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEE-c--HHHHHHHHHCCCeEe
Q 013700 322 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-T--TRTADWFKSRGFREC 398 (438)
Q Consensus 322 ~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~-t--~~a~~fY~k~GF~~~ 398 (438)
.+.||+||+.+... ...+..+.|..+|++|+||||||++.|+..+....-..|.+.+... + +.|.+.|+|.||+..
T Consensus 182 ~~~d~~iVa~A~t~-a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riGF~~~ 260 (268)
T COG3393 182 LEGDGKIVAKAETA-AENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIGFREI 260 (268)
T ss_pred EccCCcEEEeeecc-ccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhCCeec
Confidence 34456999999887 3456789999999999999999999999999988888887764433 3 678999999999998
Q ss_pred ce
Q 013700 399 SI 400 (438)
Q Consensus 399 g~ 400 (438)
+.
T Consensus 261 g~ 262 (268)
T COG3393 261 GE 262 (268)
T ss_pred ce
Confidence 74
No 134
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.58 E-value=1.6e-07 Score=82.49 Aligned_cols=122 Identities=21% Similarity=0.166 Sum_probs=96.5
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEE-CCEEEEEEEEeee--cCCCeEEEEEEEECcccc
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPECR 355 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~-dg~iVG~~~l~~~--~~~~~~~I~~v~V~p~yR 355 (438)
++|+.+.+|+...-.+.-+...+.+..+.....+..|...+.+++. +++|.|++.-... .....+++..+.|.|+||
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~R 82 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYR 82 (173)
T ss_pred ccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHH
Confidence 5788888887777666666666777777777777788777877765 4689999876422 233578899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 356 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 356 gqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
+.|+|+.||+.+++.....+.-.+-+.+ +-|+.||+++||.....
T Consensus 83 rl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~ 131 (173)
T KOG3234|consen 83 RLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRT 131 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEe
Confidence 9999999999999999877666655555 57999999999998764
No 135
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.55 E-value=4.9e-07 Score=65.81 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=54.2
Q ss_pred EEEEECCEEEEEEEEeeecC-CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 013700 320 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 381 (438)
Q Consensus 320 ~V~~~dg~iVG~~~l~~~~~-~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l 381 (438)
+++..+++++|++.+.+... ...+++..++|+|+|||+|+|++++..+++++.+.++..+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45667899999999986432 478899999999999999999999999999999999988875
No 136
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.52 E-value=7.9e-07 Score=79.60 Aligned_cols=123 Identities=17% Similarity=0.291 Sum_probs=91.4
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcC-------CcCCHHHHHhhc-------------------CcEEEEEECCEEEEE
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGAL-------VRRTDEELLKAL-------------------DSFYVVEREGQIIAC 331 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~-------~~~~~e~l~~~~-------------------~~~~V~~~dg~iVG~ 331 (438)
+.++..+..|..+++++.+.+...+.. ...+.+.++.++ ..+|.+..|+++||+
T Consensus 4 ~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~ 83 (174)
T COG3981 4 MKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGF 83 (174)
T ss_pred ccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEE
Confidence 467777888888888888776544322 111113333332 135566668999999
Q ss_pred EEEeeecCC----CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 332 AALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 332 ~~l~~~~~~----~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
+.+.....+ ..++| ...|.|..||||||+++++.++..|+++|++.+.+.| .+|.+.-+++|=......
T Consensus 84 i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 84 INLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred EEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 999853321 35677 8899999999999999999999999999999999988 489999999998776654
No 137
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.49 E-value=7.4e-07 Score=99.28 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=87.4
Q ss_pred cccccCCCCCcceeeeeeecccEEEEEecccccCCCcceeeeE-eeeCHHHHHHHhcCC--ceEEEcCc-ccCCCCCeee
Q 013700 23 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDGG--CLVILSNL-GYSSSGEVLN 98 (438)
Q Consensus 23 ~l~~~g~~~~~~avgl~g~~g~~i~a~~~~~~~~~d~g~vG~v-~~v~~~~i~~ll~~g--~IPVi~~i-~~~~~g~~~n 98 (438)
.|++.|.+ |.-+.+.+ +++.... +...+ .....+.|+.+++.+ .|||++++ |.+++|++..
T Consensus 140 ~L~~~G~~----a~~ld~~~--~i~~~~~---------~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~tt 204 (810)
T PRK09466 140 LLNQQGLP----AAWLDARS--FLRAERA---------AQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVL 204 (810)
T ss_pred HHHhCCCC----cEEEcHHH--heecCCC---------CCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEE
Confidence 66777765 88887766 4543321 12233 233467888888654 89999987 8889999988
Q ss_pred cC---hHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHHhhh
Q 013700 99 CN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 149 (438)
Q Consensus 99 in---aD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~~g~ 149 (438)
+. +|..|+.+|.+|+|+.+.+.|||+|+ | ++.++|++||++|+.+|...|.
T Consensus 205 LGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Ga 265 (810)
T PRK09466 205 LGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAA 265 (810)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCc
Confidence 84 89999999999999999999999988 3 4589999999999999987664
No 138
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.7e-06 Score=76.59 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=85.5
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcC--C-----cCCHHHHHhhc---------CcEEEEEE-C--CEEEEEEEEeeecC
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGAL--V-----RRTDEELLKAL---------DSFYVVER-E--GQIIACAALFPFFK 339 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~--~-----~~~~e~l~~~~---------~~~~V~~~-d--g~iVG~~~l~~~~~ 339 (438)
.+|+....|+..+..+........+. . ....+.+...+ ..+.+... + +++||++.+.....
T Consensus 11 ~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~ 90 (187)
T COG1670 11 LLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGLSDIDR 90 (187)
T ss_pred EeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEEEEecc
Confidence 34677888888888555332222111 1 12222322222 12233322 2 48999999986552
Q ss_pred ---CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 013700 340 ---EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 340 ---~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~~ 402 (438)
...+++ .+.++|+|||+|+|+..++.+++++-. .++.++.+.+ .+++++++|+||+..+...
T Consensus 91 ~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~ 160 (187)
T COG1670 91 AANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELR 160 (187)
T ss_pred ccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhh
Confidence 566777 677799999999999999999999955 8999999888 5899999999999988653
No 139
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.44 E-value=1.1e-06 Score=93.31 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=65.5
Q ss_pred cEEEEEE---CCEEEEEEEEeeecC-------CCeEEEEEEE-----------ECccccCCcHHHHHHHHHHHHHHHCCC
Q 013700 318 SFYVVER---EGQIIACAALFPFFK-------EKCGEVAAIG-----------VSPECRGQGQGDKLLDYIEKKAASLGL 376 (438)
Q Consensus 318 ~~~V~~~---dg~iVG~~~l~~~~~-------~~~~~I~~v~-----------V~p~yRgqGiG~~Ll~~l~~~a~~~g~ 376 (438)
.+|+.+. ++.++||+.+..... ...+.|..+. ++|+|||+|+|++||++++++|++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 3455555 478999999884321 1244455444 359999999999999999999999999
Q ss_pred CEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 377 DMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 377 ~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
+.+.+.+ ..+.+||+|+||+..+..
T Consensus 492 ~~i~v~s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 492 EKILVISGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CEEEEeeCchHHHHHHHCCCEEEcce
Confidence 9999876 589999999999987543
No 140
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.38 E-value=4.1e-06 Score=66.39 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=57.4
Q ss_pred EEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHC
Q 013700 321 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 393 (438)
Q Consensus 321 V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~ 393 (438)
.+..||+.+|++.+.. +++...|....|.|++||||+|++|++.+++++++.|.+ |...|+-+.+|++++
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCSYVAKYFRRH 72 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSHHHHHHHHH-
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECHHHHHHHHhC
Confidence 3455688999999863 678999999999999999999999999999999998854 456677778888875
No 141
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.23 E-value=1.5e-06 Score=74.06 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=93.0
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEee----ec----------CCC
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFP----FF----------KEK 341 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~----~~----------~~~ 341 (438)
+.+.++.....|..+++.|.++...+-. ....+.+.......+++..+|.+-||..-.. +. .++
T Consensus 6 mp~~~~D~~apd~aavLaLNNeha~els--wLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~ 83 (167)
T COG3818 6 MPILIRDVRAPDLAAVLALNNEHALELS--WLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYEN 83 (167)
T ss_pred cceehhhhcCCchhhHHhccchhhhhcc--ccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCCc
Confidence 4456777777888888888665443322 2233444333333356777777666654321 11 236
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEeceeccch
Q 013700 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIEMIPE 405 (438)
Q Consensus 342 ~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t------~~a~~fY~k~GF~~~g~~~lp~ 405 (438)
..++..+.|....||+|.|++|...+.++++..|+..+.+++ +.+-.|.-.+||.++|...+..
T Consensus 84 F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 84 FFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred eEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 778999999999999999999999999999999999999988 3678888999999999776553
No 142
>PRK09181 aspartate kinase; Validated
Probab=98.22 E-value=1e-05 Score=85.22 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=67.3
Q ss_pred HHHHHHHhc----CCceEEEcCcccCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCccc--c------CCCcccc
Q 013700 70 VTRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIR 134 (438)
Q Consensus 70 ~~~i~~ll~----~g~IPVi~~i~~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~--~------~~~~~i~ 134 (438)
.+.|...++ .+.|||+++++.+.+|++..+ .+|..|+.||.+|+|+.+.+.|||+.. | ++.++|+
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~ 261 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIG 261 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcC
Confidence 566777666 478999999876778999888 589999999999999999999999722 3 3678999
Q ss_pred cCCHHHHHHHHHhhh
Q 013700 135 FLTLQEADSLIRQRV 149 (438)
Q Consensus 135 ~l~~~e~~~l~~~g~ 149 (438)
+||++|+.+|...|.
T Consensus 262 ~lsy~Ea~ELA~~GA 276 (475)
T PRK09181 262 RTNYDVADQLANLGM 276 (475)
T ss_pred ccCHHHHHHHHHcCc
Confidence 999999999976664
No 143
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.20 E-value=2.5e-05 Score=72.51 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=60.3
Q ss_pred CcEEEEEECC--EEEEEEEEeeec------------------------------------CCCeEEEEEEEECccccCCc
Q 013700 317 DSFYVVEREG--QIIACAALFPFF------------------------------------KEKCGEVAAIGVSPECRGQG 358 (438)
Q Consensus 317 ~~~~V~~~dg--~iVG~~~l~~~~------------------------------------~~~~~~I~~v~V~p~yRgqG 358 (438)
...|+...++ +++|++.+.... .-..+.|-.++|+|++|++|
T Consensus 27 h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G 106 (196)
T PF13718_consen 27 HRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRMG 106 (196)
T ss_dssp EEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSS
T ss_pred ceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcCC
Confidence 4578888888 999999875211 01456788999999999999
Q ss_pred HHHHHHHHHHHHH-------------------------HHCCCCEEEEEc---HHHHHHHHHCCCeEeceec
Q 013700 359 QGDKLLDYIEKKA-------------------------ASLGLDMLFLLT---TRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 359 iG~~Ll~~l~~~a-------------------------~~~g~~~l~l~t---~~a~~fY~k~GF~~~g~~~ 402 (438)
||+++++.+++++ +..++.++-+.- ..-.+||.|+||..+....
T Consensus 107 ~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~ 178 (196)
T PF13718_consen 107 YGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQ 178 (196)
T ss_dssp HHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-S
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEec
Confidence 9999999999999 466777764433 5789999999999987653
No 144
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.16 E-value=2.3e-05 Score=77.36 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHhc----CCceEEEcCcccCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCccc--c------CCCccccc
Q 013700 71 TRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIRF 135 (438)
Q Consensus 71 ~~i~~ll~----~g~IPVi~~i~~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~--~------~~~~~i~~ 135 (438)
+.|...++ .+.|||+++++.+.+|++..+ .+|..|+.||.+|+|+.+.+.|||+.. | ++.+.|++
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~ 256 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGR 256 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCc
Confidence 45555444 578999999977778999888 489999999999999999999999722 3 35689999
Q ss_pred CCHHHHHHHHHhhh
Q 013700 136 LTLQEADSLIRQRV 149 (438)
Q Consensus 136 l~~~e~~~l~~~g~ 149 (438)
+|++|+.+|..-|.
T Consensus 257 lsY~EA~ELA~~Ga 270 (304)
T cd04248 257 TNYDVADQLANLGM 270 (304)
T ss_pred cCHHHHHHHHHcCh
Confidence 99999999976654
No 145
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.13 E-value=3.3e-05 Score=74.54 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=87.9
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEEC-CEEEEEEEEeeecCCCeEEEEEEEECcccc
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSPECR 355 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~d-g~iVG~~~l~~~~~~~~~~I~~v~V~p~yR 355 (438)
++.+..+...|...+...-.-+...+.. +...++.+.+++.+ +++|+|.++.- -.|.|++|+|.+|
T Consensus 3 ~~~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~q 69 (352)
T COG3053 3 NYTFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQ 69 (352)
T ss_pred ceEEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhcc
Confidence 3567777778877777765555555432 22344556666655 99999998862 2588999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 013700 356 GQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 400 (438)
Q Consensus 356 gqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~ 400 (438)
|-|+.-+|+.++++++-++|...+|+.| +....||+.+||.+...
T Consensus 70 GeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~~ 115 (352)
T COG3053 70 GEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIAS 115 (352)
T ss_pred cccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEeec
Confidence 9999999999999999999999999999 67899999999998753
No 146
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.98 E-value=0.0001 Score=71.73 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=76.6
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCcC-CcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccC
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 356 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRg 356 (438)
+.|++++++.+.... ...+...+. .-.+.+++.+. ..-+++..+++||+-|.-. +...+..+| .+.++|+|||
T Consensus 129 y~l~~Ide~l~~~~~---~e~~s~d~~~~~~s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~-~~~~~~~EI-~I~T~~~yR~ 202 (265)
T PF12746_consen 129 YELKRIDEELYENSL---EEEWSEDLVSQFSSYEDFLKN-GFGFCILHDGEIVSGCSSY-FVYENGIEI-DIETHPEYRG 202 (265)
T ss_dssp CEEEE--HHHHHHHH---HSCCCGGGTTTSSSHHHHHHH---EEEEEETTEEEEEEEEE-EEETTEEEE-EEEE-CCCTT
T ss_pred eEEEECCHHHHHhhh---hhHhHHHHHHhcCCHHHHHhc-CcEEEEEECCEEEEEEEEE-EEECCEEEE-EEEECHHhhc
Confidence 457777665444332 111112222 22356666544 5677888899988755444 234567899 8999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 357 QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 357 qGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
||+|+.+...++..|.++|+...+-.. .++.++=+|+||+.....
T Consensus 203 kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~kLGf~~~~~Y 248 (265)
T PF12746_consen 203 KGLATAVAAAFILECLENGLYPSWDCHNLASIALAEKLGFHFDFEY 248 (265)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHHHCT--EEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHHHcCCccccee
Confidence 999999999999999999988865433 689999999999987654
No 147
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.0001 Score=69.63 Aligned_cols=73 Identities=23% Similarity=0.146 Sum_probs=57.6
Q ss_pred eCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEec-Cccc-------cCCCcccccCCHH
Q 013700 68 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQ 139 (438)
Q Consensus 68 v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltd-v~g~-------~~~~~~i~~l~~~ 139 (438)
.+.....+.|+.|.|+|.+.- .|+.+ -..|++|+..|..++||-|+..|+ |+|+ ||+++.+++||++
T Consensus 113 ~~~~~A~~~l~~grVvIf~gG----tg~P~-fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~ 187 (238)
T COG0528 113 YSRREAIRHLEKGRVVIFGGG----TGNPG-FTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYD 187 (238)
T ss_pred cCHHHHHHHHHcCCEEEEeCC----CCCCC-CchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHH
Confidence 456677778899999998742 12222 345999999999999999999995 9988 3568999999999
Q ss_pred HHHHHH
Q 013700 140 EADSLI 145 (438)
Q Consensus 140 e~~~l~ 145 (438)
|+.+..
T Consensus 188 e~l~~~ 193 (238)
T COG0528 188 EVLKIG 193 (238)
T ss_pred HHHHhc
Confidence 987763
No 148
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.86 E-value=0.00016 Score=62.14 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc---CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcH
Q 013700 283 AKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQ 359 (438)
Q Consensus 283 at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~---~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGi 359 (438)
++++|.-++.++| ...+.+.+.+++ ..+|++..|++++|-+.+.. +...+.|..++|.+--|++|+
T Consensus 10 ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRrRGV 78 (128)
T PF12568_consen 10 LSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRRRGV 78 (128)
T ss_dssp --HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SSSSH
T ss_pred CCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeeccccccH
Confidence 4455666666664 222334454444 46889999999999999873 467999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEc--------HHHHHHHHHCCCeEe
Q 013700 360 GDKLLDYIEKKAASLGLDMLFLLT--------TRTADWFKSRGFREC 398 (438)
Q Consensus 360 G~~Ll~~l~~~a~~~g~~~l~l~t--------~~a~~fY~k~GF~~~ 398 (438)
|+.|++.+.+.+ ..++...+.. .....|...+||...
T Consensus 79 G~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 79 GLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp HHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred HHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 999999999888 3445544433 235689999999764
No 149
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.83 E-value=7e-06 Score=71.99 Aligned_cols=121 Identities=14% Similarity=0.100 Sum_probs=79.1
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcCC-cC-CHHHHHhhc------Cc-------EEEEEECCEEEEEEEEeeecC-
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGALV-RR-TDEELLKAL------DS-------FYVVEREGQIIACAALFPFFK- 339 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~~-~~-~~e~l~~~~------~~-------~~V~~~dg~iVG~~~l~~~~~- 339 (438)
..+.|||..++|...+..|-. ..|+. .+ +.+-+...+ .. -+.-...+.+||++.-...+.
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea----~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E 85 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEA----SEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKE 85 (190)
T ss_pred ccccCCCCChHHHHHHhcccc----ccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcch
Confidence 445799999999888887733 33321 11 112221111 00 011122578999887543221
Q ss_pred -------------CCeEEEEEEEECccccCCcHHHHHHHHHHHH-HHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 013700 340 -------------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKK-AASLGLDMLFLLT-TRTADWFKSRGFRECSI 400 (438)
Q Consensus 340 -------------~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~-a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~ 400 (438)
.....|+.++|+|+||.||+|..|+..-++. +.+.-.+++.+-+ .+...||+++||+.+++
T Consensus 86 ~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 86 RLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred hhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeecc
Confidence 2457899999999999999999999885544 4554455666666 57899999999999986
No 150
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.76 E-value=0.00013 Score=60.33 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=55.3
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEE
Q 013700 317 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLF 380 (438)
Q Consensus 317 ~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~ 380 (438)
..+|+...+|+.+|.+..++ ..++...|.+-+|.+++||||+|++|+..+++.+++.|.+-+=
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~-~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP 77 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYD-RGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIP 77 (99)
T ss_pred ceEEEEecCCcEEEEEEEec-CCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcc
Confidence 45788888999999999884 4568899999999999999999999999999999999875543
No 151
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.70 E-value=0.00043 Score=75.75 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=50.8
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHHHHCCCeEecee
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY~k~GF~~~g~~ 401 (438)
..+.|-.++|||++|++|||++|++.++++++ .++.++-+.- ....+||.|+||.++...
T Consensus 530 ~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls 592 (758)
T COG1444 530 VGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLS 592 (758)
T ss_pred ceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEec
Confidence 34578899999999999999999999999997 5677764433 678999999999998754
No 152
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.69 E-value=0.00031 Score=70.45 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=78.0
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc------------------CcEEEEEE--CCEEEEEEEEee
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------------------DSFYVVER--EGQIIACAALFP 336 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~------------------~~~~V~~~--dg~iVG~~~l~~ 336 (438)
|+.|||++.+|+++|.+|-...-.--...|.+++.+.+.+ .+++|.++ .|+|+|++++..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 4689999999999999996654322122344444433322 13567775 489999999851
Q ss_pred e-----------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH---CCCCE
Q 013700 337 F-----------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS---LGLDM 378 (438)
Q Consensus 337 ~-----------------------------------~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~---~g~~~ 378 (438)
. +-.+..+|+.++++|+||+.|.|+.|-+.-.-++.+ +-.++
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~ 160 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADR 160 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SE
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchh
Confidence 0 012667999999999999999999998877666644 44566
Q ss_pred EEEEc------HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 379 LFLLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 379 l~l~t------~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
++.+- ...-.||+.+|=+..+.+. + +..|-..-.+|-|+..|+|.
T Consensus 161 viAElrG~~De~G~SPFWdalG~~FF~mdF-~---eAD~Lsg~~~k~FIaeLMP~ 211 (342)
T PF04958_consen 161 VIAELRGVSDEDGRSPFWDALGRHFFDMDF-Q---EADYLSGIGNKQFIAELMPR 211 (342)
T ss_dssp EEEE--B---TT---HHHHHTGGGTS---H-H---HHHHHHHH------------
T ss_pred eeeeccCCcCCCCCCchHHHhhccccCCCH-H---HHHHHHcCCcchHHHHhCCC
Confidence 76655 3557899998866554431 1 12222233678888888874
No 153
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=97.68 E-value=9.5e-05 Score=67.34 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=81.5
Q ss_pred eeeehhhcCCCcccccCCceeEE-EECCcc-CHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEe
Q 013700 258 LLLELFKRDGMGTMVASDLYEGT-RTAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 335 (438)
Q Consensus 258 ll~el~~~~g~GT~i~~d~~~~I-R~at~~-D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~ 335 (438)
|..||||+.|.||.|.+...+.. ...+.- |.+.+.+++...+..........+.+... .+-++.++..-|.+.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~---~~~iy~d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNR---LFKIYVDEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS----SEEEEETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhcc---ceEEEEeCCceEEEEEE
Confidence 45799999999999998765443 334444 89999999887763322222233333322 33333345555555554
Q ss_pred e---ecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHHHH--CCCeE
Q 013700 336 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFKS--RGFRE 397 (438)
Q Consensus 336 ~---~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY~k--~GF~~ 397 (438)
+ ......++|..++|.|..||.|++..++..+.+.. +.++..+ ++..+||-+ -|+-.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF-----PKLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc-----cceEEEecCCCCcccEEEEeeEEEEE
Confidence 3 23446999999999999999999999999986443 2255555 567788844 46554
No 154
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=97.66 E-value=5.8e-05 Score=68.21 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=53.9
Q ss_pred HHhcCCceEEEcCcc----cCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCcccc---CCCcccccCCHHHHHH
Q 013700 75 ERLDGGCLVILSNLG----YSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEADS 143 (438)
Q Consensus 75 ~ll~~g~IPVi~~i~----~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~~---~~~~~i~~l~~~e~~~ 143 (438)
.-...+.+||+=|-. .|+--...-|-+|.+|..||+.++|.++++.|||+|+. ++++++++|+..|++.
T Consensus 88 ~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~~ 163 (212)
T COG2054 88 DGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLKT 163 (212)
T ss_pred hccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhccc
Confidence 344566778876642 35555567788999999999999999999999999984 4578999888777654
No 155
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.59 E-value=0.00015 Score=71.84 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=71.1
Q ss_pred CcEEEEEECCEEEEEEEEeeec---C---CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHH
Q 013700 317 DSFYVVEREGQIIACAALFPFF---K---EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 390 (438)
Q Consensus 317 ~~~~V~~~dg~iVG~~~l~~~~---~---~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY 390 (438)
..++|++++.++++.....|+. . -..+.|..+++.|+|||+|.-++||.+.++..+..|+...+|. +-+.+||
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-P~s~~iY 117 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-PFSGGIY 117 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-cCchhhH
Confidence 5789999999999988876532 1 2567899999999999999999999999999999999887775 4578999
Q ss_pred HHCCCeEece
Q 013700 391 KSRGFRECSI 400 (438)
Q Consensus 391 ~k~GF~~~g~ 400 (438)
+|+||+..+.
T Consensus 118 rKfGye~asn 127 (389)
T COG4552 118 RKFGYEYASN 127 (389)
T ss_pred hhccccccce
Confidence 9999998874
No 156
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.45 E-value=0.00059 Score=68.25 Aligned_cols=147 Identities=17% Similarity=0.180 Sum_probs=96.0
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----------------CcEEEEEE--CCEEEEEEEEeee-
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF- 337 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~V~~~--dg~iVG~~~l~~~- 337 (438)
|+.|||++..|+++|++|-...-.--...|.+++.+.+.+ .+++|.++ .|++||++++...
T Consensus 1 M~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 80 (344)
T PRK10456 1 MMVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAV 80 (344)
T ss_pred CeEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecc
Confidence 3679999999999999995443211122444444443332 24567775 4899999997520
Q ss_pred ----------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH---CCCCEEE
Q 013700 338 ----------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS---LGLDMLF 380 (438)
Q Consensus 338 ----------------------------------~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~---~g~~~l~ 380 (438)
+-.+..+|+.++++|+||+.|.|+.|-+.-.-++.+ +-.++++
T Consensus 81 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~vi 160 (344)
T PRK10456 81 GLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV 160 (344)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhh
Confidence 001566899999999999999999888766555533 3344555
Q ss_pred EEc------HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 381 LLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 381 l~t------~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
.+- ...-.||+.+|=+..+.+ + .+..|-..-.+|.|+..|+|.
T Consensus 161 AEmRG~~De~G~SPFWd~lg~hFF~md-F---~eAD~Lsg~~~k~FIaeLMP~ 209 (344)
T PRK10456 161 AEMRGVIDEHGYSPFWQSLGKRFFSMD-F---SRADYLCGTGQKAFIAELMPK 209 (344)
T ss_pred eeccCccCCCCCCccHHHhhccccCCC-H---HHHHHHhcCCCceeHHHHCCC
Confidence 443 244579998887765544 1 123333345688899888875
No 157
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.43 E-value=0.0019 Score=59.60 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=79.5
Q ss_pred ccCHHHHHHHHHHHHHcCcC--C----cCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecC-------------------
Q 013700 285 VTDLSGIKQIIQPLVESGAL--V----RRTDEELLKALDSFYVVEREGQIIACAALFPFFK------------------- 339 (438)
Q Consensus 285 ~~D~~~I~~L~~~~~~~~~~--~----~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~------------------- 339 (438)
.++++++.++....+.+... . ....+++...-..+.++.++|+++||+.+.|...
T Consensus 7 ~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~ 86 (182)
T PF00765_consen 7 RRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPR 86 (182)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---S
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCC
Confidence 45567777777776655431 1 1123333332234566678899999999985321
Q ss_pred -CCeEEEEEEEECccccC------CcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 340 -EKCGEVAAIGVSPECRG------QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 340 -~~~~~I~~v~V~p~yRg------qGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
++.+|+..++|+|+.++ .-+...|+..+.++|.++|++.+...+ ....++|++.||....
T Consensus 87 ~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 87 SPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRR 154 (182)
T ss_dssp STTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEE
T ss_pred CCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEE
Confidence 37899999999998532 247889999999999999999998877 6789999999999764
No 158
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.26 E-value=0.0046 Score=59.64 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=83.9
Q ss_pred eeEEEECCcc-CHHHHHHHHHHHHHcCcCCc--------CCHHHHHhhcCcEEEEEE--CCEEEEEEEEeee--------
Q 013700 277 YEGTRTAKVT-DLSGIKQIIQPLVESGALVR--------RTDEELLKALDSFYVVER--EGQIIACAALFPF-------- 337 (438)
Q Consensus 277 ~~~IR~at~~-D~~~I~~L~~~~~~~~~~~~--------~~~e~l~~~~~~~~V~~~--dg~iVG~~~l~~~-------- 337 (438)
++.++.+... ++.++.++....+.+...-+ ...+++.. ...++++.+ ++++|||+.+.+.
T Consensus 7 ~~~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~-~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~ 85 (241)
T TIGR03694 7 YFEIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDA-HSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQP 85 (241)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCC-CCcEEEEEECCCCCEEEEEEEecccccccccc
Confidence 4556666544 47788888877654432211 12222322 233444443 4899999998752
Q ss_pred -c--------------------CCCeEEEEEEEECccccCC--------c--------------------HHHHHHHHHH
Q 013700 338 -F--------------------KEKCGEVAAIGVSPECRGQ--------G--------------------QGDKLLDYIE 368 (438)
Q Consensus 338 -~--------------------~~~~~~I~~v~V~p~yRgq--------G--------------------iG~~Ll~~l~ 368 (438)
+ .+..+|+..++|+|+||++ | +...|+..+.
T Consensus 86 ~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 165 (241)
T TIGR03694 86 FPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLI 165 (241)
T ss_pred ccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHH
Confidence 0 1358899999999999974 1 5677999999
Q ss_pred HHHHHCCCCEEEEEc-HHHHHHHHHCCCeEe
Q 013700 369 KKAASLGLDMLFLLT-TRTADWFKSRGFREC 398 (438)
Q Consensus 369 ~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~ 398 (438)
++|.++|++.++..+ +...+++.++||...
T Consensus 166 ~~a~~~Gi~~~~~v~~~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 166 ALSSANGITHWYAIMEPRLARLLSRFGIQFR 196 (241)
T ss_pred HHHHHCCCcEEEEEeCHHHHHHHHHhCCceE
Confidence 999999999998888 567889999998754
No 159
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.25 E-value=0.00049 Score=54.48 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=40.3
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCC
Q 013700 348 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 395 (438)
Q Consensus 348 v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF 395 (438)
++|+|+|||+|+|++|++.++++++..|+. ....+..+|.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 999999999999999999999999998877 44578999999999
No 160
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.20 E-value=0.0013 Score=53.18 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=59.1
Q ss_pred ECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEec
Q 013700 324 REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 399 (438)
Q Consensus 324 ~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g 399 (438)
.+|++|..+... ..+++..-++.|+|||||+.+.++....+++.++|+.. +..+ ..++++..++||....
T Consensus 6 peG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~-Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 6 PEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF-YGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred CCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe-EeehHhccHHHHHHHHHCCCeecC
Confidence 457777777665 46789999999999999999999999999999999875 4444 5789999999999864
No 161
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.12 E-value=0.0019 Score=64.47 Aligned_cols=144 Identities=13% Similarity=0.171 Sum_probs=92.9
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc-----------------CcEEEEEE--CCEEEEEEEEeee---
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALFPF--- 337 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~-----------------~~~~V~~~--dg~iVG~~~l~~~--- 337 (438)
|||++..|+++|++|-...-.--...|.+++.+.+.+ .+++|.++ .|+++|++++...
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 7999999999999995442211122333433333222 24567775 4899999997520
Q ss_pred --------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHH---HCCCCEEEEE
Q 013700 338 --------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA---SLGLDMLFLL 382 (438)
Q Consensus 338 --------------------------------~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~---~~g~~~l~l~ 382 (438)
+-.+..+|+.++++|+||+-|.|+.|-+.-.-++. ++-.++++.+
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~viAE 161 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSRIIVE 161 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhheee
Confidence 00156689999999999999999988876655553 3444555554
Q ss_pred c------HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 383 T------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 383 t------~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
- ...-.||+.+|=+..+.+. .+..|--.-.+|.|+..|+|.
T Consensus 162 mrG~~De~G~SPFWd~lg~hFF~mdF----~eAD~Lsg~~~k~FIaeLMP~ 208 (336)
T TIGR03245 162 IQGVQDDNGDSPFWDAIGRHFFDLDF----ATAEYYSGIKSKTFIAELMPP 208 (336)
T ss_pred ccCccCCCCCCccHHHhhccccCCCH----HHHHHHhcCCCceeHHHHCCC
Confidence 4 2345799988877655441 123333345688899888875
No 162
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.10 E-value=0.0021 Score=64.11 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=93.0
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----------------CcEEEEEE--CCEEEEEEEEeee----
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 337 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~V~~~--dg~iVG~~~l~~~---- 337 (438)
|||++..|+++|++|-...-.--...|.+++.+.+.+ .+.+|.++ .|+|+|++++...
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999995443211112333333332221 24567775 4899999997520
Q ss_pred -------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHH---HCCCCEEEEEc
Q 013700 338 -------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA---SLGLDMLFLLT 383 (438)
Q Consensus 338 -------------------------------~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~---~~g~~~l~l~t 383 (438)
+-.+..+|+.++++|+||+.|.|+.|-+.-.-++. ++-.++++.+-
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAEm 161 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAEM 161 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhheeec
Confidence 00156689999999999999999998876655553 34445555544
Q ss_pred ------HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 384 ------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 384 ------~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
...-.||+.+|-+..+.+. + +..|--.-.+|.|+..|+|.
T Consensus 162 rG~~De~G~SPFWd~lg~hFF~mdF-~---~AD~Lsg~~~k~FIaeLMP~ 207 (335)
T TIGR03243 162 RGVSDEQGRSPFWEALGRHFFSMDF-A---QADYLSGIGSKTFIAELMPK 207 (335)
T ss_pred cCccCCCCCCccHHHhhccccCCCH-H---HHHHHhcCCCceeHHHHCCC
Confidence 2445799998877665441 1 23333345688899888875
No 163
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.07 E-value=0.0017 Score=64.81 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=92.7
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----------------CcEEEEEE--CCEEEEEEEEeee----
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 337 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~V~~~--dg~iVG~~~l~~~---- 337 (438)
|||++..|+++|++|-...-.--...|.+++.+.+.+ .+++|.++ .|+++|++++...
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999995543211122444444443332 24567765 4899999997520
Q ss_pred -------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH---CCCCEEEEEc
Q 013700 338 -------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS---LGLDMLFLLT 383 (438)
Q Consensus 338 -------------------------------~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~---~g~~~l~l~t 383 (438)
+-.+..+|+.++++|+||+.|.|+.|-+.-.-++.+ +-.++++.+-
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAEm 161 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKIIAEM 161 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhhhhhh
Confidence 001566899999999999999999888766555533 3334444433
Q ss_pred ------HHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 384 ------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 384 ------~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
...-.||+.+|=+..+.+ ++ +..|--.-.+|.|+..|+|.
T Consensus 162 rG~~De~G~SPFWd~lg~hFF~md-F~---eAD~Lsg~~~k~FIaeLMP~ 207 (336)
T TIGR03244 162 RGVSDEQGRSPFWNALGRHFFSMD-FS---QADYLSGIGQKAFIAELMPK 207 (336)
T ss_pred cCccCCCCCCchHHHhhccccCCC-HH---HHHHHhccCcchhHHHHCCC
Confidence 234579988887765544 11 22333334677888888875
No 164
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.009 Score=52.45 Aligned_cols=124 Identities=18% Similarity=0.116 Sum_probs=81.7
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcCc--CCcCC----HHHHHhhcC-----cEEEEEE--C-------CEEEEEEEEeee
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESGA--LVRRT----DEELLKALD-----SFYVVER--E-------GQIIACAALFPF 337 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~~--~~~~~----~e~l~~~~~-----~~~V~~~--d-------g~iVG~~~l~~~ 337 (438)
..+.|.++..++...+|+..-.-... ..+.+ .+....|-. .|+|... + +..||-+-+...
T Consensus 14 vILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt 93 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLT 93 (185)
T ss_pred EEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEe
Confidence 45889999999999999865332211 12222 222333331 2444411 1 235675554322
Q ss_pred cC---------CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 013700 338 FK---------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 338 ~~---------~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~~ 401 (438)
.+ -..+++.-+.-.|..||+|||+..+..++.|+.. .++....+.. .++.+||+|++|..+...
T Consensus 94 ~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 94 TSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred cCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 11 1356776677899999999999999999999965 5776766666 589999999999987643
No 165
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.94 E-value=0.012 Score=55.34 Aligned_cols=114 Identities=13% Similarity=0.152 Sum_probs=77.5
Q ss_pred ccCHHHHHHHHHHHHHcCcC--Cc----CCHHHHHhhcCcEEEEE-ECCEEEEEEEEeeec-------------------
Q 013700 285 VTDLSGIKQIIQPLVESGAL--VR----RTDEELLKALDSFYVVE-REGQIIACAALFPFF------------------- 338 (438)
Q Consensus 285 ~~D~~~I~~L~~~~~~~~~~--~~----~~~e~l~~~~~~~~V~~-~dg~iVG~~~l~~~~------------------- 338 (438)
.+++.++.+|....+.+... .+ ...+++...-.++.+.. .+|+++||+.+.+..
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 34566677777666554321 11 12222322223344444 467999999986421
Q ss_pred -CCCeEEEEEEEECccccCC---c----HHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEe
Q 013700 339 -KEKCGEVAAIGVSPECRGQ---G----QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFREC 398 (438)
Q Consensus 339 -~~~~~~I~~v~V~p~yRgq---G----iG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~ 398 (438)
.++.+|+..++|+|+++.. + +...|+..+.+++.+.|++.++..+ +...++|.++||...
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQ 163 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeE
Confidence 2368999999999986422 2 5678999999999999999998877 567799999998764
No 166
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.89 E-value=0.021 Score=48.91 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=70.4
Q ss_pred CccCHHHHHHHHHHHHHcC---cCCcCCHHHHHh---hc-----CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECc
Q 013700 284 KVTDLSGIKQIIQPLVESG---ALVRRTDEELLK---AL-----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 352 (438)
Q Consensus 284 t~~D~~~I~~L~~~~~~~~---~~~~~~~e~l~~---~~-----~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p 352 (438)
+++|++.+.+++....... +..+.+.+-+.. .. -.++++..+|++||+..... ..+..+.....++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~--~~~~~~~~~~g~~~ 104 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFR--HGGTLYYWYGGYDP 104 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEE--ECCEEEEEEEEECH
Confidence 4567777777776544332 222333332222 22 24677788999999987663 44678888899999
Q ss_pred cccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 353 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 353 ~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
+|+..+.|..|+..++++|.+.|++.+-+..
T Consensus 105 ~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 105 EYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred hhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999999999999999999999998876654
No 167
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.89 E-value=0.019 Score=52.73 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred EEEEEC-CEEEEEEEEeeec------CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHH
Q 013700 320 YVVERE-GQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKS 392 (438)
Q Consensus 320 ~V~~~d-g~iVG~~~l~~~~------~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k 392 (438)
+++..+ .++|+.+.+..+. +.....++.++++|+|||+|+++.+-+.+.+..+..+-..+...+..+.+||.+
T Consensus 49 ~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~~N~~~~~~~~~~~~w~k 128 (181)
T PF06852_consen 49 LTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVDDNSVAQGNVKMSNFWHK 128 (181)
T ss_pred EEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCCCceeeecCHHHHHHHHH
Confidence 344444 5688888775433 346889999999999999999975545444544443334444444677888877
Q ss_pred -CCCeEece
Q 013700 393 -RGFRECSI 400 (438)
Q Consensus 393 -~GF~~~g~ 400 (438)
+||...+.
T Consensus 129 ~~G~~~~~h 137 (181)
T PF06852_consen 129 MFGFDDYGH 137 (181)
T ss_pred HhCCCCCcc
Confidence 79888765
No 168
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.26 E-value=0.064 Score=49.97 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCccCHHHHHHHHHHHHHcCcC------CcCCHHHHHhhcCcEEEE-EECCEEEEEEEEeeec-----------------
Q 013700 283 AKVTDLSGIKQIIQPLVESGAL------VRRTDEELLKALDSFYVV-EREGQIIACAALFPFF----------------- 338 (438)
Q Consensus 283 at~~D~~~I~~L~~~~~~~~~~------~~~~~e~l~~~~~~~~V~-~~dg~iVG~~~l~~~~----------------- 338 (438)
..++-++++.++....+.+... .....+++.+.--.+.++ ..+++|+||+.+.|.-
T Consensus 12 ~~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~ 91 (209)
T COG3916 12 LFPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGP 91 (209)
T ss_pred hcHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCC
Confidence 3344556677776666554321 112233333322234455 6789999999987521
Q ss_pred ---CCCeEEEEEEEECc--cccCC---c-HHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 339 ---KEKCGEVAAIGVSP--ECRGQ---G-QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 339 ---~~~~~~I~~v~V~p--~yRgq---G-iG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
+++.+|...|+|++ .-+.. . ++..|+.-+++++.+.|++.|...| ....+.+++.||....
T Consensus 92 ~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~r 162 (209)
T COG3916 92 PPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLTR 162 (209)
T ss_pred CCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEE
Confidence 13788999999987 22222 2 4889999999999999999999888 5789999999998764
No 169
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.22 E-value=0.011 Score=61.23 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=93.6
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHHcCcC-CcCCHHHHHhhc--CcEEEE---E----ECCEEEEEEEEeeecCCCeEEE
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKAL--DSFYVV---E----REGQIIACAALFPFFKEKCGEV 345 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~~--~~~~V~---~----~dg~iVG~~~l~~~~~~~~~~I 345 (438)
+.+++++....+++.|.+|.+..-+-... ...+.++..+.. ..+.+. . -|.-+||++.+.. .+..+.|
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~I 489 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWFI 489 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEEh
Confidence 45778999999999999998765544443 334677777633 233222 1 2456899998874 4478888
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEecee
Q 013700 346 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 346 ~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t------~~a~~fY~k~GF~~~g~~ 401 (438)
..+..+=+.=|+++-.+||..+++.|...|...+.... .+..+||+++||+..+..
T Consensus 490 Dt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~en 551 (574)
T COG3882 490 DTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGEN 551 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccccc
Confidence 88887777779999999999999999999999888766 256899999999966544
No 170
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=95.82 E-value=0.04 Score=46.73 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=57.7
Q ss_pred CcEEEEEECCEEEEEEEEeee---cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHH
Q 013700 317 DSFYVVEREGQIIACAALFPF---FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFK 391 (438)
Q Consensus 317 ~~~~V~~~dg~iVG~~~l~~~---~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t--~~a~~fY~ 391 (438)
...|....++.+|||+.+... ..+-..-+..+++-..|||+|+|++..+.+...+ +|...+.... ++|..||+
T Consensus 37 ~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~--~g~w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 37 REAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSA--WGVWQVATVRENTPARAFWK 114 (143)
T ss_pred cceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHh--hceEEEEEeccCChhHHHHH
Confidence 345667779999999987532 2234456888999999999999999999887655 4545544333 68999999
Q ss_pred HCCCe
Q 013700 392 SRGFR 396 (438)
Q Consensus 392 k~GF~ 396 (438)
+.=+.
T Consensus 115 ~~~~t 119 (143)
T COG5628 115 RVAET 119 (143)
T ss_pred hhhcc
Confidence 96554
No 171
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=95.17 E-value=0.025 Score=58.38 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=45.3
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 351 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 351 ~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
...||.+|+|++||+.+++.|++.+..++.+.+ -.+...|.|+||...|+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCc
Confidence 478999999999999999999998888887766 588999999999987753
No 172
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=94.41 E-value=0.53 Score=43.59 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=79.6
Q ss_pred EEECCccCHHHHHHHHHHHHHcCcC-CcCCHHHHHhhcC------cEEEEEECC-EEEEEEEEeeecC-----C-----C
Q 013700 280 TRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------SFYVVEREG-QIIACAALFPFFK-----E-----K 341 (438)
Q Consensus 280 IR~at~~D~~~I~~L~~~~~~~~~~-~~~~~e~l~~~~~------~~~V~~~dg-~iVG~~~l~~~~~-----~-----~ 341 (438)
+|+++++|++++.+|+......-.. ...+.+++.+|+- ..||+++++ +|-.+++++..+. + .
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 8999999999999999987765333 4568899999872 367777765 8889888875432 1 3
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 342 ~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
.+++. .++... =--.+|+..++-.|++.|+.-..+.. -....|.+.+.|.+-.
T Consensus 111 aAY~f-Y~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~Gd 164 (190)
T PF02799_consen 111 AAYSF-YYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGD 164 (190)
T ss_dssp EEEEE-EEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEE
T ss_pred eeeee-eeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCC
Confidence 44542 233222 23578999999999999998877766 3445889999999754
No 173
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.29 E-value=0.098 Score=50.82 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=56.9
Q ss_pred eeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----------------CcEEEEEE--CCEEEEEEEEee--
Q 013700 277 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP-- 336 (438)
Q Consensus 277 ~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----------------~~~~V~~~--dg~iVG~~~l~~-- 336 (438)
++.+||++..|++++.+|-...-.--...|...+.+...+ .+++|.++ .|+++|++++.-
T Consensus 1 mlvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~v 80 (336)
T COG3138 1 MLVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAV 80 (336)
T ss_pred CcccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEee
Confidence 3568999999999999995432111111333333332222 24667776 589999988741
Q ss_pred -----ec----------------------------CCCeEEEEEEEECccccCCcHHHHHHH
Q 013700 337 -----FF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 365 (438)
Q Consensus 337 -----~~----------------------------~~~~~~I~~v~V~p~yRgqGiG~~Ll~ 365 (438)
+. -.+..+++.++++|+||.-+.|+.|-+
T Consensus 81 Gl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 81 GLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred ccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 10 014568889999999997777776654
No 174
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=93.79 E-value=1.5 Score=42.31 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=64.1
Q ss_pred HHHHHHHHH----HHcCcCCcCCHHHHHhhcC------cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcH
Q 013700 290 GIKQIIQPL----VESGALVRRTDEELLKALD------SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQ 359 (438)
Q Consensus 290 ~I~~L~~~~----~~~~~~~~~~~e~l~~~~~------~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGi 359 (438)
+-.+|+..+ +.++-+.+.+.+++...+. .++-...+|++||++.+.... +...-+ -.+-||+|-.+++
T Consensus 107 E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~-d~lSAV-Y~FyDPd~~~~SL 184 (240)
T PRK01305 107 EHYALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLD-DGLSAV-YTFYDPDEEHRSL 184 (240)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccC-CceeeE-EEeeCCCccccCC
Confidence 344454443 3344444556676665542 233445689999999887433 333344 4556999999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 360 GDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 360 G~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
|+-.+-.-+++|++.|.+.+++.-
T Consensus 185 G~~~iL~qI~~ak~~gl~y~YLGY 208 (240)
T PRK01305 185 GTFAILWQIELAKRLGLPYVYLGY 208 (240)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeeE
Confidence 999999999999999999999865
No 175
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=93.64 E-value=0.61 Score=43.04 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=58.7
Q ss_pred CCcccccCCceeEEEECCccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcC--cEEEEE-EC---CEEEEEEEEeeecCC
Q 013700 267 GMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALD--SFYVVE-RE---GQIIACAALFPFFKE 340 (438)
Q Consensus 267 g~GT~i~~d~~~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~--~~~V~~-~d---g~iVG~~~l~~~~~~ 340 (438)
..|..|.++..+.+..++=..-....+-+- +...-|+... .+..++. .|||+. .| -.++||-+-... ..
T Consensus 4 PPG~eiYr~~~~sifEVdG~~~~~yCqnLc-LlaKLFLd~K---tlyydv~~F~FYVl~e~d~~g~h~vGyFSKEk~-s~ 78 (188)
T PF01853_consen 4 PPGNEIYRDDNISIFEVDGAKHKLYCQNLC-LLAKLFLDHK---TLYYDVDPFLFYVLTEKDDDGFHIVGYFSKEKE-SW 78 (188)
T ss_dssp -SSEEEEEETTEEEEEEETTTSHHHHHHHH-HHHHTT-SSG---CCTT-STTEEEEEEEEEETTEEEEEEEEEEESS--T
T ss_pred CCcCEEEECCCeEEEEEECCcCchHHHHHH-HHHHHHhhCe---EEEeecCceEEEEEEEecCccceeEEEEEEEec-cc
Confidence 457777777666776665433332222111 1111121110 0111122 244443 33 258888876533 33
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
...-+.|+.|.|.||++|+|+.|++..-..++..+
T Consensus 79 ~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 79 DNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp T-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred CCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 56789999999999999999999999999887765
No 176
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.71 Score=43.57 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=74.0
Q ss_pred EEEECC-ccCHHHHHHHHHHHHHcCcCCcCCHHHHHhh---cCcEEEEEECC-EEEEEEEEee-ecCCC-eEEEEEEEEC
Q 013700 279 GTRTAK-VTDLSGIKQIIQPLVESGALVRRTDEELLKA---LDSFYVVEREG-QIIACAALFP-FFKEK-CGEVAAIGVS 351 (438)
Q Consensus 279 ~IR~at-~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~---~~~~~V~~~dg-~iVG~~~l~~-~~~~~-~~~I~~v~V~ 351 (438)
.+|.++ +.++++..++....+..........+.+... -.....++.++ ++||..--+| ..... ..+-+..+|.
T Consensus 4 vvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~ 83 (266)
T COG3375 4 VVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVR 83 (266)
T ss_pred eEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhcc
Confidence 355554 5677888888777765544433344444332 24466677655 9999987776 22222 3456678999
Q ss_pred ccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH
Q 013700 352 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT 384 (438)
Q Consensus 352 p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~ 384 (438)
|++++.|+|-+|=..--+++...|+..+...-.
T Consensus 84 e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfD 116 (266)
T COG3375 84 EEVKGSGLGVALKMKQRERALSMGYTLIAWTFD 116 (266)
T ss_pred ccccccchhhhhHHHHHHHHHhcCeeeEEEecc
Confidence 999999999999998889999999998877663
No 177
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=93.52 E-value=0.084 Score=53.43 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=58.3
Q ss_pred CCceEEEcCc-c-cCCCCCeeec---ChHHHHHHHHHHcCCCEEEEEecCccc---c----CCCcccccCCHHHHHHHHH
Q 013700 79 GGCLVILSNL-G-YSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 146 (438)
Q Consensus 79 ~g~IPVi~~i-~-~~~~g~~~ni---naD~~A~~lA~aL~A~~li~ltdv~g~---~----~~~~~i~~l~~~e~~~l~~ 146 (438)
.+.+||++++ | ..+.|-+..+ ..|..|+.||++|++|.+-.--||+|+ | |.+++++.+|++|+.+|.-
T Consensus 258 en~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY 337 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY 337 (559)
T ss_pred CCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh
Confidence 4789999985 6 4566655544 579999999999999999999999987 4 4589999999999999865
Q ss_pred hhh
Q 013700 147 QRV 149 (438)
Q Consensus 147 ~g~ 149 (438)
-|.
T Consensus 338 fGa 340 (559)
T KOG0456|consen 338 FGA 340 (559)
T ss_pred hhh
Confidence 543
No 178
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=93.48 E-value=0.11 Score=40.22 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=26.1
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHH
Q 013700 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKA 371 (438)
Q Consensus 342 ~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a 371 (438)
.+-|..+.|+|.+|++||+++||+.+....
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 456889999999999999999999887654
No 179
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=93.32 E-value=0.3 Score=40.48 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=48.9
Q ss_pred EEEEEECCEEEEEEEEeeec-CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 013700 319 FYVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 390 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~-~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY 390 (438)
.+-++.++...||+.+.+.. .....+|..++|.|..|++|+++.|+..+.+.. +.++..+ ++..+||
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNPINPWY 80 (99)
T ss_pred ceEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 44456667788888886422 247899999999999999999999999887553 4555544 3445555
No 180
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=93.21 E-value=2.4 Score=38.07 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCEEEEEEEEeeec------CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCE
Q 013700 325 EGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 378 (438)
Q Consensus 325 dg~iVG~~~l~~~~------~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~ 378 (438)
.+++|||++..|.. .-...+|..++||+.+|.++++--|++++-+.+...|+-.
T Consensus 87 ~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 87 SKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred CCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 68999999876531 1267899999999999999999999999999999888754
No 181
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=92.99 E-value=1.5 Score=38.00 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=55.5
Q ss_pred CcCCHHHHHhhcC------cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCE
Q 013700 305 VRRTDEELLKALD------SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 378 (438)
Q Consensus 305 ~~~~~e~l~~~~~------~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~ 378 (438)
.+.+.+++...+. ...-...+|++||++.+...+ +...-+ -.+-+|++....+|+-.+-.-+++|++.|.+.
T Consensus 21 ~~~~~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~-~glSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y 98 (128)
T PF04377_consen 21 DPPSQEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILP-DGLSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPY 98 (128)
T ss_pred CCcCHHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeeccc-chhhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCE
Confidence 3334666665542 233445789999998876433 333334 23459999999999999999999999999999
Q ss_pred EEEEc
Q 013700 379 LFLLT 383 (438)
Q Consensus 379 l~l~t 383 (438)
+++--
T Consensus 99 ~YLGY 103 (128)
T PF04377_consen 99 YYLGY 103 (128)
T ss_pred EeeCe
Confidence 98843
No 182
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=92.66 E-value=0.15 Score=50.84 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=42.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 013700 352 PECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT-TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 352 p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t-~~a~~fY~k~GF~~~g~~ 401 (438)
..||.||+|..||+.+++.|++ +|-..+.+.. ..+..+|.|+||+..++.
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChh
Confidence 3699999999999999999975 7777877666 578999999999987653
No 183
>PRK14852 hypothetical protein; Provisional
Probab=92.48 E-value=0.83 Score=52.14 Aligned_cols=123 Identities=11% Similarity=0.122 Sum_probs=86.5
Q ss_pred EEEECC-ccCHHHHHHHHHH-HHHcCcCCcCCHHHHHh---hc--CcEEEEEECCEEEEEEEEeeecC------------
Q 013700 279 GTRTAK-VTDLSGIKQIIQP-LVESGALVRRTDEELLK---AL--DSFYVVEREGQIIACAALFPFFK------------ 339 (438)
Q Consensus 279 ~IR~at-~~D~~~I~~L~~~-~~~~~~~~~~~~e~l~~---~~--~~~~V~~~dg~iVG~~~l~~~~~------------ 339 (438)
.||.++ .+|+..+..|... +..+++..+-+...+.. .+ ...|++...+++++...+.+...
T Consensus 30 ~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~ 109 (989)
T PRK14852 30 AIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKP 109 (989)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHH
Confidence 467765 5778899999877 45667764433222211 12 23466655566666666543211
Q ss_pred ---------CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHH-CCCeEecee
Q 013700 340 ---------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKS-RGFRECSIE 401 (438)
Q Consensus 340 ---------~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k-~GF~~~g~~ 401 (438)
...++++.++++|+.|.+-+=-.|++.+.+++...++..++..+ +.-..||++ +||+..+..
T Consensus 110 eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 110 EVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred HHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 26889999999999998877778888898888888999988888 466899997 799998753
No 184
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=92.46 E-value=1.6 Score=43.73 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=60.0
Q ss_pred EEEEE-ECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHC
Q 013700 319 FYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 393 (438)
Q Consensus 319 ~~V~~-~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~ 393 (438)
++++. .++++||.+.+... .+..+....+.+++++..+-...|+-.++++|.+.|++..-+.. ....+|-++.
T Consensus 197 l~~a~~~~g~~va~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~ 274 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYF--RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNW 274 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEe--CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcC
Confidence 45566 68888887665533 23343334567899999999999999999999999999887654 1455666778
Q ss_pred CCeEecee
Q 013700 394 GFRECSIE 401 (438)
Q Consensus 394 GF~~~g~~ 401 (438)
||+.+...
T Consensus 275 G~~~~~l~ 282 (330)
T TIGR03019 275 GFEPQPLH 282 (330)
T ss_pred CCeeccce
Confidence 99987644
No 185
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=91.80 E-value=1.7 Score=43.72 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=82.8
Q ss_pred EEEECCccCHHHHHHHHHHHHHc-CcCCcCCHHHHHhhcC------cEEEEEE-CCEEEEEEEEeeecCC----------
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFKE---------- 340 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~-~~~~~~~~e~l~~~~~------~~~V~~~-dg~iVG~~~l~~~~~~---------- 340 (438)
-+|+++..|++++.+|+..+... .+....+.+++++|+- ..||++. +|+|-+|++++-.+..
T Consensus 262 G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl 341 (421)
T KOG2779|consen 262 GLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTL 341 (421)
T ss_pred CcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCccee
Confidence 48999999999999999886544 4445567899988872 3566665 7999999998854321
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
..+++ ...|+.+ ---.+|+.-++-.+++.|+.-..+.. -....|+++++|-.-.
T Consensus 342 ~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~Gd 396 (421)
T KOG2779|consen 342 QAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGD 396 (421)
T ss_pred eeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCC
Confidence 33444 3334333 12467888888888999988765554 3567899999998743
No 186
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=91.71 E-value=0.51 Score=39.11 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 013700 319 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 390 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY 390 (438)
.+-++.++..=||+.+.+.......+|..++|.|..||+|+++.|++.+.+.. +.++..+ ++..+||
T Consensus 11 ~~~~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04265 11 LHTIYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNPINPWY 80 (99)
T ss_pred ceEEEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 44455566666777776432247899999999999999999999999888554 3455544 3445555
No 187
>PTZ00064 histone acetyltransferase; Provisional
Probab=91.71 E-value=0.66 Score=48.64 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCcccccCCceeEEEECCccCHHHHHH---HHHHHHHcCcCCcCCHHHHHhhcC--cEEEE-EEC---CEEEEEEEEee
Q 013700 266 DGMGTMVASDLYEGTRTAKVTDLSGIKQ---IIQPLVESGALVRRTDEELLKALD--SFYVV-ERE---GQIIACAALFP 336 (438)
Q Consensus 266 ~g~GT~i~~d~~~~IR~at~~D~~~I~~---L~~~~~~~~~~~~~~~e~l~~~~~--~~~V~-~~d---g~iVG~~~l~~ 336 (438)
...|..|+++..+.|..+.=.......+ |+..++-++-. +.-++. .|||+ +.| -.+|||..=..
T Consensus 307 hPPG~EIYR~~~iSifEVDG~~~klYCQNLCLLAKLFLDhKT-------LYyDVdpFlFYVLtE~D~~G~HiVGYFSKEK 379 (552)
T PTZ00064 307 HPPGNEIYRKDNISVFEIDGALTRGYAENLCYLAKLFLDHKT-------LQYDVEPFLFYIVTEVDEEGCHIVGYFSKEK 379 (552)
T ss_pred CCCCCeEEEeCCEEEEEEeCccchhHHHHHHHHHHHhccCcc-------ccccccceEEEEEEEecCCCcEEEEEecccc
Confidence 3457778776666666655433332222 22222222211 111222 24444 333 36888877553
Q ss_pred ecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 337 FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 337 ~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
. .....-+.||.|.|.||++|||+.|++..-.+.+..|
T Consensus 380 ~-S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 380 V-SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred c-CcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 2 2234579999999999999999999999988887665
No 188
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.50 E-value=0.54 Score=51.10 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=56.4
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC-------------CCEEE----------------------------
Q 013700 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-------------LDMLF---------------------------- 380 (438)
Q Consensus 342 ~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g-------------~~~l~---------------------------- 380 (438)
-+.|-.++|||+|++.|||++-++.+.++...+. .+++.
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 3467799999999999999999999998874321 11110
Q ss_pred -------E-----EcHHHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCCCCC
Q 013700 381 -------L-----LTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTSG 430 (438)
Q Consensus 381 -------l-----~t~~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~~~g 430 (438)
+ .|....+||+++||.++...+-+.. -....+.++++.+-++.++
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~-----lTGEHtcimLk~L~~~e~~ 750 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSND-----LTGEHTCIMLKTLEGDESG 750 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeeccccc-----cccceeEEEEecCCCcccc
Confidence 0 0135689999999999875543321 1123567777777655544
No 189
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=91.21 E-value=0.46 Score=46.52 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.9
Q ss_pred CEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 326 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 326 g~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
..+|||-+-.... ....-+.|+.|.|.||++|+|+.|++..-...+..|
T Consensus 140 ~h~vGYFSKEK~s-~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKVS-AEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceeccc-cCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 3588888765322 233569999999999999999999999988887665
No 190
>PLN03239 histone acetyltransferase; Provisional
Probab=88.76 E-value=0.9 Score=45.77 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=61.3
Q ss_pred CCCcccccCCceeEEEECCccCHHHHH---HHHHHHHHcCcCCcCCHHHHHhhcC--cEEEEEE-C---CEEEEEEEEee
Q 013700 266 DGMGTMVASDLYEGTRTAKVTDLSGIK---QIIQPLVESGALVRRTDEELLKALD--SFYVVER-E---GQIIACAALFP 336 (438)
Q Consensus 266 ~g~GT~i~~d~~~~IR~at~~D~~~I~---~L~~~~~~~~~~~~~~~e~l~~~~~--~~~V~~~-d---g~iVG~~~l~~ 336 (438)
...|..|.++..+.|..+.=....... -|+..++-++-. +.-.+. .|||+.+ | -.+|||-+=..
T Consensus 136 ~PPG~eIYR~~~~sifEVDG~~~~~yCQnLCLlaKLFLdhKt-------lyyDV~~FlFYVl~e~D~~g~h~vGYFSKEK 208 (351)
T PLN03239 136 HPPGNEIYRCGDLAMFEVDGFEERIYCQNLCYIAKLFLDHKT-------LYFDVDPFLFYVLCEVDERGFHPVGYYSKEK 208 (351)
T ss_pred CCCCCeEEEeCCEEEEEEeCccchHHHHHHHHHHHHhhcCcc-------eeccccceEEEEEEEecCCceEEEEEeeecc
Confidence 356888887766666666543333222 222222322211 111222 2455433 2 35888876553
Q ss_pred ecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 337 FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 337 ~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
. .....-+.|+.|.|.||++|+|+.|++..-...+..|
T Consensus 209 ~-s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 209 Y-SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred c-CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 2 2233469999999999999999999999988887655
No 191
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=88.29 E-value=1.9 Score=36.75 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=33.4
Q ss_pred EEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHH
Q 013700 344 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKS 392 (438)
Q Consensus 344 ~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k 392 (438)
.|-.++|++..|++|+|++|++++++. .++..-.+.. .....|.+|
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~---e~~~p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQE---ENVSPHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHH---cCCCcccceecCCcHHHHHHHHH
Confidence 456899999999999999999999854 3444333333 355677766
No 192
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=87.54 E-value=0.64 Score=48.45 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.6
Q ss_pred CEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 326 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 326 g~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
-.+|||.+-... .....-+.||.|.|.||++|||+.|++..-.+.+..|
T Consensus 291 ~h~vGyFSKEk~-s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKH-SEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEeccccc-CcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 379998876532 2233569999999999999999999998888886654
No 193
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=86.02 E-value=0.61 Score=48.16 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEE-----c-HH---HHHHHHHCCCeEe
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-----T-TR---TADWFKSRGFREC 398 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~-----t-~~---a~~fY~k~GF~~~ 398 (438)
..+.|..+.|||+||+-|+|..-+..+.+|..++-+...+-. + .+ =..||++.||+..
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 456799999999999999999999999999988777655433 1 12 2579999999976
No 194
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=83.02 E-value=6.7 Score=36.09 Aligned_cols=107 Identities=13% Similarity=0.208 Sum_probs=72.8
Q ss_pred CccCHHHHHHHHHHHHHcCcCCcCCHHHHHhhcCcEEEE-EECCEEEEEEEEeeecC-----------------------
Q 013700 284 KVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVV-EREGQIIACAALFPFFK----------------------- 339 (438)
Q Consensus 284 t~~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~~~~~V~-~~dg~iVG~~~l~~~~~----------------------- 339 (438)
.......+.+++...+...+.-. +......++.. ..+|++++++++..-.+
T Consensus 6 ~~~~r~~~e~fI~~~y~~~~~A~-----i~~f~P~ll~l~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~ 80 (179)
T PF12261_consen 6 GDPERAEVEQFIRQRYAQAYGAT-----IRHFMPQLLALRDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGR 80 (179)
T ss_pred CchhHHHHHHHHHHHHHHHhCCc-----CCccchHHhhhccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCC
Confidence 34456677777766555543311 11111122233 56789999998863211
Q ss_pred ----CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 013700 340 ----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 399 (438)
Q Consensus 340 ----~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~GF~~~g 399 (438)
....||+.++-. +.|.+..|+..+..+....|++++.... .+..+++.|+|.....
T Consensus 81 ~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 81 PVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred CcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCCcee
Confidence 156788888755 5889999999999999999999976655 5789999999999775
No 195
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=82.80 E-value=33 Score=30.30 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred eEEEECCccCHHHHHHHHHHHHHc-------------CcCCcCCHHH--HHhhcCcEEEEE-ECCEEEEEEEEeeec--C
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVES-------------GALVRRTDEE--LLKALDSFYVVE-REGQIIACAALFPFF--K 339 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~-------------~~~~~~~~e~--l~~~~~~~~V~~-~dg~iVG~~~l~~~~--~ 339 (438)
|.+|++++.|++.+.++-...... ....+-+... +...-.+.|++. +++++.||+.....+ +
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGd 80 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGD 80 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SS
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCC
Confidence 478999999999999883221111 0011122222 233347889998 889999999765533 3
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEec
Q 013700 340 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 399 (438)
Q Consensus 340 ~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t~-~a~~fY~k~GF~~~g 399 (438)
..+..+..+.++|.- ......-||+.+.+-|=+.++..+.+..+ ....--+..||...+
T Consensus 81 rptVlV~ri~~~~~~-~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 81 RPTVLVRRILLAPGE-PEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp SEEEEEEEE---EES-SHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred CceEEEEEeecCCCC-cHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 456777777776653 45778889999999998999998888764 334445566777544
No 196
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=82.10 E-value=14 Score=36.40 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=44.5
Q ss_pred cEEEEEE-CCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 318 SFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 318 ~~~V~~~-dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
..+++.. ||+++||+.+.+....+.+.++-.--+|+ --+|+-..|+..+++.+++.|++.+.+..
T Consensus 181 ~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 181 RGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred eEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 4677777 99999999999876455666654555666 35789999999999999988999987544
No 197
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=81.78 E-value=5.8 Score=38.54 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEeceeccchHhhhhhcCCCCceEEEEccCCC
Q 013700 358 GQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 427 (438)
Q Consensus 358 GiG~~Ll~~l~~~a~~~g~~~l~l~t~-~a~~fY~k~GF~~~g~~~lp~~~~~~y~~~r~s~~~~k~ll~~ 427 (438)
+-...|+..+.+.|++.|+.+|++.+. ....+|++.||...+.-+ ..| +..+.+||-+.+..
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~------~~f--~g~~~~~~~~~~~~ 83 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKIP------GYF--NGHDAYFMSKYLDE 83 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEecc------ccc--CCCceEEEEEcCch
Confidence 457889999999999999999999994 567999999999987542 122 33578888777654
No 198
>PHA01733 hypothetical protein
Probab=81.31 E-value=4.5 Score=36.07 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=65.6
Q ss_pred EEEECCccCHHHHHHHHHHH---HHcCcC-CcCC-HHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECcc
Q 013700 279 GTRTAKVTDLSGIKQIIQPL---VESGAL-VRRT-DEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 353 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~---~~~~~~-~~~~-~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~ 353 (438)
.|||+|.+|+..+.+-..+. +-+... .+.. .-.+...-...+....+|++++.....+...++.+.++.+..+.=
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v 83 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGHSPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAI 83 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCCCcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecHHh
Confidence 38899999986666522221 111111 1111 111122223446667789999999988643455666665665443
Q ss_pred ccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 354 CRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 354 yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
.+ +-...++.+-.+..+ ..+..++-.+ ..+++|.+.+||+....
T Consensus 84 ~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 84 EK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred Hh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 33 233444444444433 3344444333 47899999999997653
No 199
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=80.16 E-value=4.2 Score=33.40 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEEEEECC-EEEEEEEEeeec----------------------CCCeEEEEEEEECccccCCcHHHHHH
Q 013700 319 FYVVEREG-QIIACAALFPFF----------------------KEKCGEVAAIGVSPECRGQGQGDKLL 364 (438)
Q Consensus 319 ~~V~~~dg-~iVG~~~l~~~~----------------------~~~~~~I~~v~V~p~yRgqGiG~~Ll 364 (438)
.+++.+++ ++||++.+.... ....+++..++|+|+||+...-..|+
T Consensus 32 h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 44444544 499999875311 12678999999999999987777665
No 200
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=79.73 E-value=5.5 Score=40.49 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHHHHcCcCCcCCHHHHHhhc----CcEEEEEECCEEEEEEEEeee--cCCCeEEEEEEEECccccC-Cc
Q 013700 286 TDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QG 358 (438)
Q Consensus 286 ~D~~~I~~L~~~~~~~~~~~~~~~e~l~~~~----~~~~V~~~dg~iVG~~~l~~~--~~~~~~~I~~v~V~p~yRg-qG 358 (438)
=|++.+..|+++.+..... ...++..+ ...+|. |.--|.+.+... .+++..|+..++|.+..|| -|
T Consensus 345 Ldl~r~q~LI~~SFkRTLd----~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~g 417 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLD----PHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEG 417 (495)
T ss_pred cCcHHHHHHHHHHHhhccC----HHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccch
Confidence 3678888998888777543 33444433 333333 445566666533 3447889999999999999 89
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 013700 359 QGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 390 (438)
Q Consensus 359 iG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY 390 (438)
|+..++.-+-+..-. .++.-. +++.+||
T Consensus 418 isd~vfniM~e~fP~----eL~WRSR~~N~vNkwY 448 (495)
T COG5630 418 ISDAVFNIMREEFPN----ELFWRSRHNNQVNKWY 448 (495)
T ss_pred HHHHHHHHHHHhCcH----hhhhhhcccCcchhee
Confidence 999999887766532 233322 5677777
No 201
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=79.25 E-value=2.4 Score=43.49 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCCcccccCCceeEEEECCccCHHHHHHHH---HHHHHcCcCCcCCHHHHHhhcC--cEEEEEE-CCE-EEEEEEEeeec
Q 013700 266 DGMGTMVASDLYEGTRTAKVTDLSGIKQII---QPLVESGALVRRTDEELLKALD--SFYVVER-EGQ-IIACAALFPFF 338 (438)
Q Consensus 266 ~g~GT~i~~d~~~~IR~at~~D~~~I~~L~---~~~~~~~~~~~~~~e~l~~~~~--~~~V~~~-dg~-iVG~~~l~~~~ 338 (438)
...|..|+++..+.+..+.=.......+-+ ..++-++-. +.-+++ .|||..+ |++ .|||..=.. .
T Consensus 185 hPPG~EIYR~~~iSvfEVDG~~~k~YCQnLCLlaKLFLdhKT-------LYyDvdpFlFYVlte~d~~G~VGYFSKEK-~ 256 (396)
T KOG2747|consen 185 HPPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHKT-------LYYDVDPFLFYVLTECDSYGCVGYFSKEK-E 256 (396)
T ss_pred CCCcceeeecCCEEEEEecCcchhHHHHHHHHHHHHHhcCce-------eEEeccceEEEEEEecCCcceeeeecccc-c
Confidence 457889998888888777654443332221 222222211 111122 2455544 322 345443321 1
Q ss_pred CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 013700 339 KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375 (438)
Q Consensus 339 ~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g 375 (438)
..+..-+.|+.|.|.||++|+|+.|++.--.+.+..|
T Consensus 257 s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 257 SSENYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred cccccceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 2234569999999999999999999998877775443
No 202
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.63 E-value=5.6 Score=37.76 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHH-CCCe
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKS-RGFR 396 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k-~GF~ 396 (438)
....|-.|||++..|++|-|++|++++++ +.+.+.-.+.. .....|.+| .|-+
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~---kE~vephQ~a~DrPS~kLl~Fm~khYgl~ 164 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLK---KENVEPHQCAFDRPSAKLLQFMEKHYGLK 164 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHH---hcCCCchheeccChHHHHHHHHHHhcCcc
Confidence 44567799999999999999999999984 44554433333 244566655 3443
No 203
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=76.43 E-value=6 Score=36.00 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=44.2
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCC
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRG 394 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~k~G 394 (438)
-.++++-+.|.|+.+|.||+..| +.+.-..+++++.+-|..+ ....+.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 36789999999999999999976 6777888999999999888 45566677654
No 204
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=75.56 E-value=19 Score=35.81 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=67.4
Q ss_pred hcCcEEEEEECCEEEEEEEEeeecC-----CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC--------CCEEEE
Q 013700 315 ALDSFYVVEREGQIIACAALFPFFK-----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG--------LDMLFL 381 (438)
Q Consensus 315 ~~~~~~V~~~dg~iVG~~~l~~~~~-----~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g--------~~~l~l 381 (438)
...+..++...+.+|+.+.+.+..+ .-...|..+.|..=|..-|+=.-|++|++-++|+.. -..+.+
T Consensus 167 ~~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~l 246 (304)
T PF11124_consen 167 NGKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKL 246 (304)
T ss_pred cCCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEE
Confidence 3455666666789999999987532 245678999999999999999999999987776521 113433
Q ss_pred Ec------HHHHHHHHHCCCeEec-eeccch
Q 013700 382 LT------TRTADWFKSRGFRECS-IEMIPE 405 (438)
Q Consensus 382 ~t------~~a~~fY~k~GF~~~g-~~~lp~ 405 (438)
.+ +...+..++.||+.+. ...+++
T Consensus 247 l~d~YSFD~~~~k~L~~~gF~~i~ss~~ln~ 277 (304)
T PF11124_consen 247 LVDVYSFDKDMKKTLKKKGFKKISSSFKLNE 277 (304)
T ss_pred EEEeeeccHHHHHHHHHCCCeeeecceecCC
Confidence 33 5789999999999998 555554
No 205
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=70.63 E-value=11 Score=38.02 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.3
Q ss_pred CCEEEEEEEEeee----cC--CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC
Q 013700 325 EGQIIACAALFPF----FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL 376 (438)
Q Consensus 325 dg~iVG~~~l~~~----~~--~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~ 376 (438)
..++|||+...|. .+ -..++|..++||++.|+|+++--|++++-+.+.-.|+
T Consensus 144 s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gI 201 (421)
T KOG2779|consen 144 SKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGI 201 (421)
T ss_pred CCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhh
Confidence 4699999987652 22 2678999999999999999999999999999866554
No 206
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=67.84 E-value=7.3 Score=39.54 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=39.9
Q ss_pred EEEEEEEEeee---cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEE
Q 013700 327 QIIACAALFPF---FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLL 382 (438)
Q Consensus 327 ~iVG~~~l~~~---~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a-~~~g~~~l~l~ 382 (438)
..+|+.+++.+ .+.-...|..+-+.|.||++|+|..|++.+.+.. .+..+--+.++
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVE 258 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVE 258 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEec
Confidence 36777776653 3345667889999999999999999999999544 33444444444
No 207
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=11 Score=40.26 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=83.3
Q ss_pred ceeEEEECCccCHHHHHHHHHHHHH-cCcCCc-CCHHHHHhh----------cCcEEEEEE-CCEEEEEEEEee----ec
Q 013700 276 LYEGTRTAKVTDLSGIKQIIQPLVE-SGALVR-RTDEELLKA----------LDSFYVVER-EGQIIACAALFP----FF 338 (438)
Q Consensus 276 ~~~~IR~at~~D~~~I~~L~~~~~~-~~~~~~-~~~e~l~~~----------~~~~~V~~~-dg~iVG~~~l~~----~~ 338 (438)
+++.|||.+..|...+..+....+. .+...+ ++...+... .+.++++++ +++++||+.... +.
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~ 757 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFS 757 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhh
Confidence 5678999999999999999887652 222222 122222221 134556655 466999887431 00
Q ss_pred ----------------C---C-----------------------CeE-------------EEEEEEECccccCCcHHHHH
Q 013700 339 ----------------K---E-----------------------KCG-------------EVAAIGVSPECRGQGQGDKL 363 (438)
Q Consensus 339 ----------------~---~-----------------------~~~-------------~I~~v~V~p~yRgqGiG~~L 363 (438)
. + +.+ -+-..+++.+.-.-++.++|
T Consensus 758 rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m 837 (891)
T KOG3698|consen 758 RNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKKM 837 (891)
T ss_pred hceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHHH
Confidence 0 0 000 00023345555577999999
Q ss_pred HHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 013700 364 LDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 402 (438)
Q Consensus 364 l~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~~~ 402 (438)
++-++.-.+..|+..-++.+ ..-++||.++||...+..+
T Consensus 838 ~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e 880 (891)
T KOG3698|consen 838 IQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSE 880 (891)
T ss_pred HHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhh
Confidence 99999999999999988888 3568999999999877654
No 208
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=67.70 E-value=3 Score=41.90 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCcccccCCceeEEEECCccCHHHHHHHHH---HHHHcCcCCcCCHHHHHhhcC--cEEEEEECC----EEEEEEEEeee
Q 013700 267 GMGTMVASDLYEGTRTAKVTDLSGIKQIIQ---PLVESGALVRRTDEELLKALD--SFYVVEREG----QIIACAALFPF 337 (438)
Q Consensus 267 g~GT~i~~d~~~~IR~at~~D~~~I~~L~~---~~~~~~~~~~~~~e~l~~~~~--~~~V~~~dg----~iVG~~~l~~~ 337 (438)
..|..|.+|.++.+..+.=.-...+.+-+- .++-.+- .+.-+++ -|||..+.| ++|||..-..
T Consensus 186 pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCLlsKlFLd~K-------tLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK- 257 (395)
T COG5027 186 PPGNEIYRDKYISFFEIDGRKQRLYCRNLCLLSKLFLDHK-------TLYYDVDPFLFYVLTERGDTGCHLVGYFSKEK- 257 (395)
T ss_pred CCCceeeecCceEEEEEcCcchhhHHHHHHHHHHHHhcCc-------eeEEeccceEEEEEEEcCCcceeeeeeechhh-
Confidence 568889999999998887655544433222 1222211 1111222 255554432 4778776542
Q ss_pred cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHH
Q 013700 338 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 372 (438)
Q Consensus 338 ~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~ 372 (438)
......-+.|+-+.|.||++|+|+.|++.--.+.+
T Consensus 258 ~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 258 ESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred cccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 23345679999999999999999999876554444
No 209
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=66.42 E-value=23 Score=29.86 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=45.4
Q ss_pred EEEEEECCEEEEEEEEeeec-----CCCeEEEEEEEECccccC-CcHHHHHHHHHHHHHHHCCCCE-EEEEc---HHHHH
Q 013700 319 FYVVEREGQIIACAALFPFF-----KEKCGEVAAIGVSPECRG-QGQGDKLLDYIEKKAASLGLDM-LFLLT---TRTAD 388 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~-----~~~~~~I~~v~V~p~yRg-qGiG~~Ll~~l~~~a~~~g~~~-l~l~t---~~a~~ 388 (438)
.+-++.++..-|++.+.+.. ....++|..++|.+..|| .|++..+++.+.+ .... ++..+ ++..+
T Consensus 11 ~~~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~n~ 85 (108)
T cd04266 11 LATVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPVNK 85 (108)
T ss_pred ccEEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcccc
Confidence 33444556666666665321 257889999999999997 8999999998886 2333 55544 34556
Q ss_pred HH
Q 013700 389 WF 390 (438)
Q Consensus 389 fY 390 (438)
||
T Consensus 86 Wy 87 (108)
T cd04266 86 WY 87 (108)
T ss_pred eE
Confidence 66
No 210
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.20 E-value=94 Score=30.06 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred ceeEEEECCccC-HHHHHHHHHH-HHHcCcCCcCCHHHHHhhcC------cEEEEE------ECCEEEEEEEEeeecCCC
Q 013700 276 LYEGTRTAKVTD-LSGIKQIIQP-LVESGALVRRTDEELLKALD------SFYVVE------REGQIIACAALFPFFKEK 341 (438)
Q Consensus 276 ~~~~IR~at~~D-~~~I~~L~~~-~~~~~~~~~~~~e~l~~~~~------~~~V~~------~dg~iVG~~~l~~~~~~~ 341 (438)
....+++++.++ .-.+..-+.. -+.++-+.+.+..++...+. .++-.. ..|++|+++...... ++
T Consensus 96 l~~~~~~a~~s~E~y~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~-dG 174 (253)
T COG2935 96 LVVRVEPAEYSEEQYELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLP-DG 174 (253)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeeccc-Cc
Confidence 334566666543 2233333333 34455566777777766542 122223 268999988876433 33
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 342 ~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
..-+ ..+-+|++....+|+-.+-.=+.+|++.|...+++.-
T Consensus 175 lSsV-Y~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGY 215 (253)
T COG2935 175 LSSV-YTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGY 215 (253)
T ss_pred ceeE-EEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3334 3455999999999999999999999999999999865
No 211
>PHA00432 internal virion protein A
Probab=57.68 E-value=37 Score=29.80 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=54.6
Q ss_pred EEEECCccCHHHHHHHHHHH--HHcCcCCcCCHHHHHhhcCcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECc---c
Q 013700 279 GTRTAKVTDLSGIKQIIQPL--VESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP---E 353 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~--~~~~~~~~~~~e~l~~~~~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p---~ 353 (438)
.|||+|.+|+..+ ++...- +-+....... + ..-..++....+|.+++... ......+.++.-+|.. .
T Consensus 2 ~I~paT~~di~~~-~lr~~D~~E~~a~g~~~~---~-~~s~~~~~~~~~G~~~aI~G---n~G~~vW~v~T~~v~~~~~~ 73 (137)
T PHA00432 2 YIRQTTERDFDVF-NPSFEDILEAKAYGIEPS---F-PPDSECVTLSLDGFVLAIGG---NQGDQVWFVTSDQVWRLTKK 73 (137)
T ss_pred ccccccHHHHHHc-CCCHHHHHHHHhcCCCCC---C-CCCceEEEEecCCeEEEEec---CCCCceEEEecHHhhhCChh
Confidence 4889999888877 332110 0011000000 0 00134677778899988773 1122224444444433 1
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 013700 354 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 400 (438)
Q Consensus 354 yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t----~~a~~fY~k~GF~~~g~ 400 (438)
+| +..-+.+..++....++ +..++-.+ ..+++|.+.+||+....
T Consensus 74 ~~-reF~k~~~~~ld~ml~~--yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 74 EK-REFRKLIMEYRDMMLDQ--YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hh-HHHHHHHHHHHHHHHHh--hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 22 22223333333332333 33443333 57899999999998654
No 212
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=52.78 E-value=75 Score=31.08 Aligned_cols=102 Identities=21% Similarity=0.156 Sum_probs=68.2
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcCCcC-CHHHHH---hhcC---cEEEEEECCEEEEEEEEeeecCCCeEEEE--EEE
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELL---KALD---SFYVVEREGQIIACAALFPFFKEKCGEVA--AIG 349 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~~~~-~~e~l~---~~~~---~~~V~~~dg~iVG~~~l~~~~~~~~~~I~--~v~ 349 (438)
.++++..=.-+++.++|.+++...+.... ..+.+. ..+. .-.|++-+|+++|+=.++....+...++. .-.
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG 207 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYINGG 207 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCeEEEecccCc
Confidence 57777777778888888887776555332 223332 2332 23577889999999998876655544443 556
Q ss_pred ECccccCCcHHHHHH----HHHHHHHHHCCCCEEE
Q 013700 350 VSPECRGQGQGDKLL----DYIEKKAASLGLDMLF 380 (438)
Q Consensus 350 V~p~yRgqGiG~~Ll----~~l~~~a~~~g~~~l~ 380 (438)
+||+++.--.|+-|| +.+.++|++.|-+-.+
T Consensus 208 ~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrf 242 (264)
T PF07395_consen 208 YDPECRDFSPGSILMWLNIQDAWEYCRAQGKPLRF 242 (264)
T ss_pred cCcccccCCCccEEEEeeHHHHHHHHHHhCCceEE
Confidence 899999988888775 5556666666644443
No 213
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=50.66 E-value=1.6e+02 Score=30.33 Aligned_cols=113 Identities=17% Similarity=0.038 Sum_probs=69.9
Q ss_pred CCccCHHHHHHHHHHHHHcCcCCcC-CHH---HHHhhc-C--cEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECcccc
Q 013700 283 AKVTDLSGIKQIIQPLVESGALVRR-TDE---ELLKAL-D--SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECR 355 (438)
Q Consensus 283 at~~D~~~I~~L~~~~~~~~~~~~~-~~e---~l~~~~-~--~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yR 355 (438)
+++++++.+.+++..........+. +.+ .+.+.+ + .++++..++++||++.+.. +++..+-.......++.
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~--~~~~LyGRYwG~~~~~~ 287 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLR--GDDTLYGRYWGCDEEIP 287 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEE--eCCEEEEeeeccccccc
Confidence 3556788888888876655433222 333 333333 2 2456778999999998873 34555544555566665
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEece
Q 013700 356 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 400 (438)
Q Consensus 356 gqGiG~~Ll~~l~~~a~~~g~~~l~l~t~~a~~fY~k~GF~~~g~ 400 (438)
+... ....=..+++|.++|++++..-+..-. =...||.++..
T Consensus 288 ~LHF-e~cYYq~Ie~aI~~Gl~~f~~GaqGEH--K~~RGf~P~~t 329 (370)
T PF04339_consen 288 FLHF-ELCYYQGIEYAIEHGLRRFEPGAQGEH--KIARGFEPVPT 329 (370)
T ss_pred Ccch-HHHHHHHHHHHHHcCCCEEECCcchhH--HHHcCCccccc
Confidence 5542 333456889999999999876543211 12479998753
No 214
>PRK00756 acyltransferase NodA; Provisional
Probab=47.82 E-value=45 Score=30.27 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=42.8
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHH---HCCCeEe
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFK---SRGFREC 398 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t-~~a~~fY~---k~GF~~~ 398 (438)
-.++++.+.|.|+..|.||+..+ +.+.-..+++++.+-|..+ ....+-.+ +.|.-.+
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~r~g~~ti 144 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRHALRNHVERLCRNGLATI 144 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchHHHHHHHHHHhccCccee
Confidence 46789999999999999999877 6777777999999998877 33333333 4565543
No 215
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=47.20 E-value=67 Score=32.14 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=63.4
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcC---CcCCHHHHHhhc-------Cc-EEEEEEC--CEEEEEEEEeee----cC--
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLKAL-------DS-FYVVERE--GQIIACAALFPF----FK-- 339 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~---~~~~~e~l~~~~-------~~-~~V~~~d--g~iVG~~~l~~~----~~-- 339 (438)
.|.-+....++++..|+..-+.+... .-+...++.+|. .. .+++... .++|||+...|. .+
T Consensus 83 ~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~ 162 (451)
T COG5092 83 VIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKR 162 (451)
T ss_pred eEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccc
Confidence 34455566677777776654333221 111223344443 12 2333334 489999987653 11
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCC
Q 013700 340 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD 377 (438)
Q Consensus 340 ~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~ 377 (438)
....++..++|+.+.|++-+.--|++.+-+.|...|+.
T Consensus 163 ~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw 200 (451)
T COG5092 163 SSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIW 200 (451)
T ss_pred cccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhH
Confidence 25789999999999999999999999999999765543
No 216
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=47.17 E-value=1e+02 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=27.0
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHH
Q 013700 341 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 372 (438)
Q Consensus 341 ~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~ 372 (438)
-.+-|..+.|.+..|++||++.|++.+...-.
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 45678899999999999999999998776553
No 217
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=45.47 E-value=94 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=45.3
Q ss_pred EEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 013700 320 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 390 (438)
Q Consensus 320 ~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t---~~a~~fY 390 (438)
+-++.++..=|++.+.+ .....++|..++|.+.-++.|++..+++.+.+.. +.++..+ ++..+||
T Consensus 12 ~~~y~de~y~~~AIvt~-~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 79 (98)
T cd03173 12 FASYADEPLEGVAIVTY-EGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF-----PSLLWRVRENDANLKWY 79 (98)
T ss_pred eEEEEcCCccEEEEEec-CCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC-----CeeEEEeCCCCCccceE
Confidence 33444555656666652 2357889999999999999999999999887542 3555544 3445665
No 218
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=45.14 E-value=2.1e+02 Score=25.02 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=51.1
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc---HHHHHHH-H
Q 013700 317 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT---TRTADWF-K 391 (438)
Q Consensus 317 ~~~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~-~g~~~l~l~t---~~a~~fY-~ 391 (438)
+.++.+++...++|+..+..+ .+...+.+.++ +|++|| ++...-....+|.-+ .....+...+ ++=-+.| +
T Consensus 38 ~~Y~gVyeg~~l~Gi~~v~~i-~~~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 38 QLYLGVYEGGQLGGIVYVEEI-QPSVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred cEEEEEEeceEEEEEEEEEEE-eeeeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 346777888999999988743 34555664444 999998 877777777777743 2333332222 2333444 4
Q ss_pred HCCCeEecee
Q 013700 392 SRGFRECSIE 401 (438)
Q Consensus 392 k~GF~~~g~~ 401 (438)
-+|.+.++.-
T Consensus 114 llg~~RVG~i 123 (151)
T PF11039_consen 114 LLGARRVGHI 123 (151)
T ss_pred hhCCceeeeH
Confidence 4688888754
No 219
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=43.17 E-value=1.4e+02 Score=29.66 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=64.3
Q ss_pred EEEECCccCHHHHHHHHHHHHHcCcCCcC---CHHHHHhhc---C---cEEEEEECCEEEEEEEEeeecCCCeEEEE--E
Q 013700 279 GTRTAKVTDLSGIKQIIQPLVESGALVRR---TDEELLKAL---D---SFYVVEREGQIIACAALFPFFKEKCGEVA--A 347 (438)
Q Consensus 279 ~IR~at~~D~~~I~~L~~~~~~~~~~~~~---~~e~l~~~~---~---~~~V~~~dg~iVG~~~l~~~~~~~~~~I~--~ 347 (438)
.+|++..=.-+++.+++.+++...+.... ..+.+.+.+ . .-.|+.-+|+++|+=.+.....+.-..+. .
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~iN 235 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNVYFDVPN 235 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcEEEeccc
Confidence 46777766777888888888776655333 244443322 2 23578889999999988866555433332 5
Q ss_pred EEECccccCCcHHHHHH----HHHHHHHHHCCCC
Q 013700 348 IGVSPECRGQGQGDKLL----DYIEKKAASLGLD 377 (438)
Q Consensus 348 v~V~p~yRgqGiG~~Ll----~~l~~~a~~~g~~ 377 (438)
-.+||++...-.|+-|+ +.+.++|+.++-+
T Consensus 236 gG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~ 269 (298)
T PRK15312 236 GAVKNECMPLSPGSILMWLNISRARHYCQERQKK 269 (298)
T ss_pred CccCcccccCCCccEEEEecHHHHHHHHHhcCCc
Confidence 57999999888887764 4455555555543
No 220
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=41.39 E-value=97 Score=31.04 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred eEEEECCccCHHHHHHHHHHHHHcC-cCCcCCHHHHHhhcC-----------cEEEEE-ECCEEEEEEEEeeec------
Q 013700 278 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRRTDEELLKALD-----------SFYVVE-REGQIIACAALFPFF------ 338 (438)
Q Consensus 278 ~~IR~at~~D~~~I~~L~~~~~~~~-~~~~~~~e~l~~~~~-----------~~~V~~-~dg~iVG~~~l~~~~------ 338 (438)
.-+|++...|++++.+|+.++...- +....+.|++.+++. ..||++ -+|+|-+|.+++-.+
T Consensus 259 ~GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n 338 (451)
T COG5092 259 EGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIEN 338 (451)
T ss_pred cccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecC
Confidence 4589999999999999998765442 223345666666551 134444 378899988887432
Q ss_pred ----CCCeEEEEEEEECccccCCc------H---HHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEe
Q 013700 339 ----KEKCGEVAAIGVSPECRGQG------Q---GDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFREC 398 (438)
Q Consensus 339 ----~~~~~~I~~v~V~p~yRgqG------i---G~~Ll~~l~~~a~~~g~~~l~l~t~-~a~~fY~k~GF~~~ 398 (438)
+-..+++...+-+..+..-- + -..|+..++-+++..||.-..+.+. ...-|...++|-.-
T Consensus 339 ~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~G 412 (451)
T COG5092 339 KKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCG 412 (451)
T ss_pred ccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCC
Confidence 22566776666665443211 1 2334444555666677776655552 23456677888764
No 221
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=1.6e+02 Score=31.89 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=52.3
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 319 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
+.++..+|+|+||+.+.+.......-++-+=-+|+. -+|+=..|+..++.+++++|++++.+.-
T Consensus 395 va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~a-p~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 395 VAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDA-PNGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred eeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCC-CchHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 445566789999999998665566777777777877 4799999999999999999999987654
No 222
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=33.57 E-value=1.4e+02 Score=30.82 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=57.5
Q ss_pred CcEEEEEECCEEEEEEEEeeec-C-C--------------------Ce---------EEEEEEEECccccCCcHHHHHHH
Q 013700 317 DSFYVVEREGQIIACAALFPFF-K-E--------------------KC---------GEVAAIGVSPECRGQGQGDKLLD 365 (438)
Q Consensus 317 ~~~~V~~~dg~iVG~~~l~~~~-~-~--------------------~~---------~~I~~v~V~p~yRgqGiG~~Ll~ 365 (438)
.+++++.+++++||.+=++... + + .. +.=..+.++|......+...|++
T Consensus 44 p~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~ 123 (370)
T PF04339_consen 44 PRHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQ 123 (370)
T ss_pred ceEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHH
Confidence 3567888889999988765210 0 0 00 00115678888888889999999
Q ss_pred HHHHHHHHCCCCEEEEEc--HHHHHHHHHCCCeEe
Q 013700 366 YIEKKAASLGLDMLFLLT--TRTADWFKSRGFREC 398 (438)
Q Consensus 366 ~l~~~a~~~g~~~l~l~t--~~a~~fY~k~GF~~~ 398 (438)
.+.+.|++.|+..+.+.- ..-....+..||...
T Consensus 124 ~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~r 158 (370)
T PF04339_consen 124 ALEQLAEENGLSSWHILFPDEEDAAALEEAGFLSR 158 (370)
T ss_pred HHHHHHHHcCCCcceeecCCHHHHHHHHhCCCcee
Confidence 999999999988776544 344566778888765
No 223
>PHA02769 hypothetical protein; Provisional
Probab=33.39 E-value=32 Score=29.13 Aligned_cols=42 Identities=24% Similarity=0.542 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH---HCCCCEEEEEc--HHHHHHHHHCCCeEecee
Q 013700 360 GDKLLDYIEKKAA---SLGLDMLFLLT--TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 360 G~~Ll~~l~~~a~---~~g~~~l~l~t--~~a~~fY~k~GF~~~g~~ 401 (438)
|.-|++.+...++ ..|..-++..- ..+..+|.|.||+.++..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccc
Confidence 6667777766664 45666665444 578999999999998854
No 224
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.10 E-value=3.2e+02 Score=32.46 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=47.0
Q ss_pred ECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 013700 324 REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 383 (438)
Q Consensus 324 ~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l~t 383 (438)
.+|+++||+.+.|.. .+.+.++-+=-+|+. -.|+=..|+-.++.++++.|++++.+.-
T Consensus 428 ~~G~i~af~s~~p~~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 428 ADGQVVALLSFVPWG-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred CCCeEEEEEEEeeeC-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 368999999999854 344666555556765 6899999999999999999999988755
No 225
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=30.39 E-value=1.4e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=20.8
Q ss_pred CCEEEEEc---HHHHHHHHHCCCeEeceeccc
Q 013700 376 LDMLFLLT---TRTADWFKSRGFRECSIEMIP 404 (438)
Q Consensus 376 ~~~l~l~t---~~a~~fY~k~GF~~~g~~~lp 404 (438)
+..+.+.+ ..+.+||+++||+......++
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~ 35 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLELGLELEGRAEIE 35 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHHcCCEEccccccC
Confidence 34455555 689999999999987655444
No 226
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=28.53 E-value=96 Score=24.27 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=24.0
Q ss_pred cChHHHHHHHHHHcCCC-EEEEEecCcc
Q 013700 99 CNTYEVATACALAIEAD-KLICIIDGPI 125 (438)
Q Consensus 99 inaD~~A~~lA~aL~A~-~li~ltdv~g 125 (438)
.++|.+...++.+|..+ .++-|||..|
T Consensus 20 ~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 20 QSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 36899999999999999 9999999775
No 227
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.97 E-value=1.3e+02 Score=28.82 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCCEEEEEc-------HHHHHHHHHCCCeEece
Q 013700 363 LLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSI 400 (438)
Q Consensus 363 Ll~~l~~~a~~~g~~~l~l~t-------~~a~~fY~k~GF~~~g~ 400 (438)
-...+.+-++..|+++|.+.| .+..+||++.||+....
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 445566667888999999998 36789999999998765
No 228
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=26.94 E-value=72 Score=26.01 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.3
Q ss_pred HHHHHHHHHCCCeEe
Q 013700 384 TRTADWFKSRGFREC 398 (438)
Q Consensus 384 ~~a~~fY~k~GF~~~ 398 (438)
..+.+||+++||+..
T Consensus 12 ~~a~~FY~~LGf~~~ 26 (122)
T cd07235 12 AKSLDFYRRLGFDFP 26 (122)
T ss_pred HHHHHHHHHhCceec
Confidence 689999999999875
No 229
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=25.01 E-value=3.1e+02 Score=22.62 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=37.3
Q ss_pred EEEEEECCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHH
Q 013700 319 FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKK 370 (438)
Q Consensus 319 ~~V~~~dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~ 370 (438)
.+-++.|+..=+.+.+.+ ..+..++|..+.|..+-++.|++..+++.+.+.
T Consensus 11 ~~k~Y~de~~~a~AIV~~-~~~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d 61 (98)
T cd04263 11 PFKAYGDEPMEVLAIVLP-PSGEVATLATFTITKSGWLNNVADNIFTAIKKD 61 (98)
T ss_pred CeEEEecCCCcEEEEEec-CCCCCEEEEEEEEccccccccHHHHHHHHHHhh
Confidence 344455555544445543 236789999999999999999999999988754
No 230
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.81 E-value=2.2e+02 Score=23.82 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEc-------HHHHHHHHHCCCeEeceecc
Q 013700 360 GDKLLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIEMI 403 (438)
Q Consensus 360 G~~Ll~~l~~~a~~~g~~~l~l~t-------~~a~~fY~k~GF~~~g~~~l 403 (438)
+....+.+.+.+++.|++.+.+.. ..+.+-+.+.|+++....+.
T Consensus 45 a~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~ 95 (110)
T PF00411_consen 45 AQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDV 95 (110)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEee
Confidence 567778888899999999888777 36788888999998876554
No 231
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.48 E-value=8.3e+02 Score=25.23 Aligned_cols=55 Identities=16% Similarity=-0.063 Sum_probs=38.7
Q ss_pred CCEEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 013700 325 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 381 (438)
Q Consensus 325 dg~iVG~~~l~~~~~~~~~~I~~v~V~p~yRgqGiG~~Ll~~l~~~a~~~g~~~l~l 381 (438)
++.+++.+.+..+ ++.++.-.-+-+++|+.-+=...|...++++|.++|+++.-.
T Consensus 301 ~~~~la~~l~~~~--g~~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf 355 (406)
T PF02388_consen 301 DEIPLAGALFIYY--GDEAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDF 355 (406)
T ss_dssp SEEEEEEEEEEEE--TTEEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CcceEEEEEEEEE--CCEEEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEe
Confidence 3445565555522 344444467889999999999999999999999999997644
No 232
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.57 E-value=1e+02 Score=25.25 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCeEec
Q 013700 384 TRTADWFKSRGFRECS 399 (438)
Q Consensus 384 ~~a~~fY~k~GF~~~g 399 (438)
.++.+||+.+||+...
T Consensus 12 ~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 12 EKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 6899999999999764
No 233
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.48 E-value=1.8e+02 Score=30.25 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=52.8
Q ss_pred HcCcCCcCCHHHHHh---hcCcEEEEEEC-CEEEEEEEEeeecCCCeEEEEEEEE--Cc--cccCCcHHHHHHHHHHHHH
Q 013700 300 ESGALVRRTDEELLK---ALDSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGV--SP--ECRGQGQGDKLLDYIEKKA 371 (438)
Q Consensus 300 ~~~~~~~~~~e~l~~---~~~~~~V~~~d-g~iVG~~~l~~~~~~~~~~I~~v~V--~p--~yRgqGiG~~Ll~~l~~~a 371 (438)
...++..+....+.. |-..++.+.++ +++++.+.+..........+ .++ -| +|...-+-..+++.+.+++
T Consensus 15 ~~~flQs~~wa~vk~~~gw~~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~--~yiprGPv~d~~d~ell~~f~~~Lk~~a 92 (406)
T PF02388_consen 15 QGNFLQSSEWAEVKEKRGWEVERVGVKDDGGEVAAAALLLRKKPFKGFKY--AYIPRGPVMDYSDEELLEFFLEELKKYA 92 (406)
T ss_dssp T--CCCSHHHHHHCHHTTSEEEEEEEE-TTS-EEEEEEEEEEECTTTCEE--EEETT--EC-TT-HHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEEEEEeCCCeEEEEEEEEEeccCCceeE--EEECCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 344444445555542 22345555555 66766554442221111112 222 24 7778888899999999999
Q ss_pred HHCCCCEEEEEc-------------------HHHHHHHHHCCCeEecee
Q 013700 372 ASLGLDMLFLLT-------------------TRTADWFKSRGFRECSIE 401 (438)
Q Consensus 372 ~~~g~~~l~l~t-------------------~~a~~fY~k~GF~~~g~~ 401 (438)
+++++-.|.+.. ......++++||+..+..
T Consensus 93 kk~~a~~lridP~~~~~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~ 141 (406)
T PF02388_consen 93 KKKRALFLRIDPNVIYQERDEDGEPIEGEENDELIENLKALGFRHQGFT 141 (406)
T ss_dssp CTTTEEEEEE--S-EEECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-S
T ss_pred HHCCEEEEEEeCchhhhhcccccccccCcchHHHHHHHHhcCceecCcc
Confidence 887766665443 134788999999987754
No 234
>PRK10976 putative hydrolase; Provisional
Probab=20.21 E-value=2.9e+02 Score=26.15 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=49.8
Q ss_pred eeeEeeeCHHHHHHHhcCCceEEEcCcccCCCCCeeecChHHHHHHHHHHcCCCEEEEEecCccc-cCCCccc--ccCCH
Q 013700 62 TGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLI--RFLTL 138 (438)
Q Consensus 62 vG~v~~v~~~~i~~ll~~g~IPVi~~i~~~~~g~~~ninaD~~A~~lA~aL~A~~li~ltdv~g~-~~~~~~i--~~l~~ 138 (438)
.++|..-+.+.|+.+.++|...+++ +|..+. .+..+...|+-+..+++.+...+ +.+++.| ..++.
T Consensus 17 ~~~is~~~~~ai~~l~~~G~~~~ia------TGR~~~-----~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~~~~l~~ 85 (266)
T PRK10976 17 DHTLSPYAKETLKLLTARGIHFVFA------TGRHHV-----DVGQIRDNLEIKSYMITSNGARVHDTDGNLIFSHNLDR 85 (266)
T ss_pred CCcCCHHHHHHHHHHHHCCCEEEEE------cCCChH-----HHHHHHHhcCCCCeEEEcCCcEEECCCCCEehhhcCCH
Confidence 3456777899999999999888876 344332 34456677887755666665533 5566655 56777
Q ss_pred HHHHHHHH
Q 013700 139 QEADSLIR 146 (438)
Q Consensus 139 ~e~~~l~~ 146 (438)
+.+.++++
T Consensus 86 ~~~~~i~~ 93 (266)
T PRK10976 86 DIASDLFG 93 (266)
T ss_pred HHHHHHHH
Confidence 77777764
Done!