Query 013701
Match_columns 438
No_of_seqs 404 out of 3355
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4v_A Phosphoribosylaminoimid 100.0 3.1E-51 1E-55 359.7 17.7 167 271-437 14-180 (183)
2 3lp6_A Phosphoribosylaminoimid 100.0 5.5E-51 1.9E-55 355.9 17.2 165 269-433 6-170 (174)
3 3trh_A Phosphoribosylaminoimid 100.0 7.3E-50 2.5E-54 347.2 18.8 161 269-429 5-167 (169)
4 3ors_A N5-carboxyaminoimidazol 100.0 4.4E-50 1.5E-54 347.2 14.9 158 270-427 3-162 (163)
5 1xmp_A PURE, phosphoribosylami 100.0 2.2E-49 7.7E-54 343.9 16.2 158 270-427 11-170 (170)
6 4b4k_A N5-carboxyaminoimidazol 100.0 1.2E-48 4.2E-53 341.3 17.8 157 270-426 22-180 (181)
7 3kuu_A Phosphoribosylaminoimid 100.0 5.6E-49 1.9E-53 342.6 13.8 157 270-426 12-170 (174)
8 1u11_A PURE (N5-carboxyaminoim 100.0 4.1E-49 1.4E-53 345.9 12.4 160 269-428 20-181 (182)
9 3oow_A Phosphoribosylaminoimid 100.0 1.1E-48 3.9E-53 338.8 13.9 156 271-426 6-163 (166)
10 4grd_A N5-CAIR mutase, phospho 100.0 1E-47 3.5E-52 333.8 17.0 155 269-423 11-167 (173)
11 2ywx_A Phosphoribosylaminoimid 100.0 1.4E-47 4.7E-52 329.6 16.7 153 273-429 2-154 (157)
12 3rg8_A Phosphoribosylaminoimid 100.0 1.6E-47 5.6E-52 330.9 17.1 155 271-428 3-158 (159)
13 3eth_A Phosphoribosylaminoimid 100.0 1.1E-41 3.9E-46 340.4 27.4 240 2-261 99-340 (355)
14 3k5i_A Phosphoribosyl-aminoimi 100.0 3.2E-41 1.1E-45 343.5 29.4 250 5-261 148-399 (403)
15 4e4t_A Phosphoribosylaminoimid 100.0 1.9E-40 6.5E-45 339.3 31.7 252 2-261 153-415 (419)
16 3orq_A N5-carboxyaminoimidazol 100.0 4.3E-40 1.5E-44 332.4 25.7 239 3-255 131-371 (377)
17 3q2o_A Phosphoribosylaminoimid 100.0 1.8E-39 6E-44 329.2 30.0 247 2-260 132-379 (389)
18 2h31_A Multifunctional protein 100.0 1.3E-40 4.5E-45 332.4 17.7 159 269-430 264-423 (425)
19 1a9x_A Carbamoyl phosphate syn 100.0 1.6E-37 5.5E-42 350.2 26.3 345 2-395 694-1054(1073)
20 3aw8_A PURK, phosphoribosylami 100.0 2.5E-34 8.4E-39 289.1 31.2 244 3-261 117-361 (369)
21 3ax6_A Phosphoribosylaminoimid 100.0 3.3E-34 1.1E-38 289.3 25.8 244 3-261 121-369 (380)
22 1kjq_A GART 2, phosphoribosylg 100.0 4E-33 1.4E-37 282.1 27.1 250 3-261 134-388 (391)
23 2dwc_A PH0318, 433AA long hypo 100.0 6.7E-33 2.3E-37 284.6 27.6 254 3-262 142-413 (433)
24 2z04_A Phosphoribosylaminoimid 100.0 2.8E-33 9.5E-38 281.0 24.2 242 6-261 115-356 (365)
25 3ouz_A Biotin carboxylase; str 100.0 4.8E-29 1.7E-33 256.9 31.0 276 2-295 141-433 (446)
26 2vpq_A Acetyl-COA carboxylase; 100.0 1.2E-28 4.3E-33 254.0 30.1 275 2-292 136-428 (451)
27 1ulz_A Pyruvate carboxylase N- 100.0 1.5E-28 5.2E-33 253.4 30.2 277 2-294 136-429 (451)
28 3jrx_A Acetyl-COA carboxylase 100.0 2.9E-29 1E-33 264.5 24.5 281 3-300 230-547 (587)
29 1vkz_A Phosphoribosylamine--gl 100.0 5.1E-29 1.8E-33 254.2 23.3 251 2-262 126-401 (412)
30 3glk_A Acetyl-COA carboxylase 100.0 4E-29 1.4E-33 262.3 22.5 276 3-295 214-526 (540)
31 2w70_A Biotin carboxylase; lig 100.0 3.7E-28 1.3E-32 250.3 26.7 272 2-292 137-427 (449)
32 3vot_A L-amino acid ligase, BL 100.0 2.4E-28 8.3E-33 250.0 25.0 250 3-261 133-412 (425)
33 3lp8_A Phosphoribosylamine-gly 100.0 5E-27 1.7E-31 241.5 30.4 255 2-262 143-428 (442)
34 2ip4_A PURD, phosphoribosylami 100.0 3.2E-27 1.1E-31 241.1 25.7 253 2-262 121-398 (417)
35 3u9t_A MCC alpha, methylcroton 100.0 2.4E-28 8.2E-33 262.7 17.9 276 3-294 164-457 (675)
36 2yw2_A Phosphoribosylamine--gl 100.0 1.4E-26 4.7E-31 236.9 29.3 251 2-262 122-405 (424)
37 2dzd_A Pyruvate carboxylase; b 100.0 7.1E-27 2.4E-31 241.6 27.2 269 2-290 142-437 (461)
38 2yrx_A Phosphoribosylglycinami 100.0 6.4E-27 2.2E-31 241.4 26.3 249 2-262 143-424 (451)
39 4dim_A Phosphoribosylglycinami 100.0 7.6E-27 2.6E-31 237.0 26.5 250 2-261 129-399 (403)
40 2qk4_A Trifunctional purine bi 100.0 9.8E-27 3.4E-31 240.0 27.0 250 2-262 148-434 (452)
41 3n6r_A Propionyl-COA carboxyla 100.0 5.4E-28 1.9E-32 260.1 17.6 277 2-294 137-450 (681)
42 3mjf_A Phosphoribosylamine--gl 100.0 1.4E-26 4.8E-31 237.5 26.5 256 2-262 127-413 (431)
43 2xcl_A Phosphoribosylamine--gl 99.9 4.1E-26 1.4E-30 233.2 27.5 247 3-262 123-403 (422)
44 1w96_A ACC, acetyl-coenzyme A 99.9 6.2E-26 2.1E-30 239.8 29.5 276 3-294 220-539 (554)
45 2qf7_A Pyruvate carboxylase pr 99.9 2.9E-26 1E-30 258.7 23.3 284 2-301 156-464 (1165)
46 1a9x_A Carbamoyl phosphate syn 99.9 1.1E-26 3.9E-31 261.9 19.9 244 2-258 148-403 (1073)
47 3va7_A KLLA0E08119P; carboxyla 99.9 5.7E-26 1.9E-30 256.5 24.7 277 3-296 166-459 (1236)
48 3hbl_A Pyruvate carboxylase; T 99.9 2.3E-26 7.8E-31 259.0 21.1 277 2-295 140-440 (1150)
49 4ffl_A PYLC; amino acid, biosy 99.9 2.3E-25 8E-30 223.1 19.7 226 16-261 124-356 (363)
50 4fu0_A D-alanine--D-alanine li 99.9 2.7E-22 9.2E-27 200.7 21.8 143 7-153 167-319 (357)
51 3vmm_A Alanine-anticapsin liga 99.9 2.9E-22 9.9E-27 207.6 17.7 180 2-183 159-366 (474)
52 1ehi_A LMDDL2, D-alanine:D-lac 99.9 2.4E-21 8.2E-26 195.2 22.2 164 9-175 166-352 (377)
53 3tqt_A D-alanine--D-alanine li 99.9 2.6E-21 8.7E-26 194.5 20.5 159 9-180 171-341 (372)
54 3k3p_A D-alanine--D-alanine li 99.9 1.4E-21 4.9E-26 197.0 18.4 142 7-153 191-343 (383)
55 3e5n_A D-alanine-D-alanine lig 99.9 2.1E-21 7E-26 196.2 18.9 143 8-154 189-342 (386)
56 2i87_A D-alanine-D-alanine lig 99.9 4.3E-21 1.5E-25 192.4 19.8 159 8-180 162-331 (364)
57 1e4e_A Vancomycin/teicoplanin 99.9 6.5E-21 2.2E-25 189.5 20.6 153 14-179 162-329 (343)
58 3lwb_A D-alanine--D-alanine li 99.9 4.8E-21 1.6E-25 192.7 19.3 139 11-153 182-337 (373)
59 3i12_A D-alanine-D-alanine lig 99.9 4.8E-21 1.6E-25 192.1 18.9 159 8-179 170-339 (364)
60 4eg0_A D-alanine--D-alanine li 99.9 4.2E-21 1.4E-25 188.8 17.6 149 3-154 128-287 (317)
61 3se7_A VANA; alpha-beta struct 99.9 1.2E-20 4.1E-25 187.9 19.9 156 12-180 160-330 (346)
62 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.8E-20 6.2E-25 182.4 20.0 155 12-173 133-301 (306)
63 2pn1_A Carbamoylphosphate synt 99.9 1.7E-20 5.7E-25 185.1 19.4 163 5-181 135-301 (331)
64 2pvp_A D-alanine-D-alanine lig 99.8 6.6E-21 2.3E-25 191.2 14.7 141 8-155 177-329 (367)
65 2fb9_A D-alanine:D-alanine lig 99.8 3.2E-20 1.1E-24 183.0 19.3 153 15-179 148-309 (322)
66 3r5x_A D-alanine--D-alanine li 99.8 8.3E-20 2.8E-24 178.3 15.6 144 4-156 119-273 (307)
67 1uc8_A LYSX, lysine biosynthes 99.8 3.1E-19 1E-23 171.2 10.6 161 3-177 109-278 (280)
68 3df7_A Putative ATP-grAsp supe 99.8 4.8E-18 1.6E-22 166.2 16.2 140 15-173 131-271 (305)
69 2r7k_A 5-formaminoimidazole-4- 99.8 2.9E-18 9.8E-23 171.2 13.9 137 16-154 149-318 (361)
70 2r85_A PURP protein PF1517; AT 99.8 2.2E-17 7.7E-22 162.5 18.0 138 15-154 124-291 (334)
71 2pbz_A Hypothetical protein; N 99.6 1.2E-16 4E-21 156.7 5.7 132 15-154 123-272 (320)
72 1wr2_A Hypothetical protein PH 99.5 3.7E-15 1.3E-19 140.4 4.5 148 2-152 41-218 (238)
73 1gsa_A Glutathione synthetase; 99.5 2.1E-13 7.2E-18 132.5 13.9 157 3-175 141-310 (316)
74 1z2n_X Inositol 1,3,4-trisphos 99.4 4.9E-13 1.7E-17 131.1 10.1 139 3-156 119-304 (324)
75 3ln6_A Glutathione biosynthesi 99.4 2E-13 6.9E-18 147.8 7.9 165 3-173 505-745 (750)
76 3ln7_A Glutathione biosynthesi 99.4 6.5E-13 2.2E-17 143.6 10.2 144 3-152 510-729 (757)
77 2yvq_A Carbamoyl-phosphate syn 99.4 1.7E-13 5.7E-18 118.8 2.4 121 240-381 1-130 (143)
78 1i7n_A Synapsin II; synapse, p 99.3 6.6E-12 2.3E-16 122.2 10.5 135 11-153 146-284 (309)
79 1pk8_A RAT synapsin I; ATP bin 99.3 1.9E-11 6.6E-16 122.6 13.3 133 12-152 259-395 (422)
80 2p0a_A Synapsin-3, synapsin II 99.3 1.8E-11 6.1E-16 120.6 12.0 153 12-174 164-320 (344)
81 2cqy_A Propionyl-COA carboxyla 99.2 2.8E-11 9.4E-16 98.9 6.8 72 2-74 30-107 (108)
82 2q7d_A Inositol-tetrakisphosph 99.1 7E-11 2.4E-15 117.1 9.1 136 7-156 150-316 (346)
83 2nu8_B SCS-beta, succinyl-COA 99.1 1.1E-10 3.9E-15 117.2 8.0 142 2-152 24-203 (388)
84 2fp4_B Succinyl-COA ligase [GD 98.9 8.8E-10 3E-14 110.9 7.7 142 2-152 24-210 (395)
85 1b93_A Protein (methylglyoxal 98.9 2E-10 6.9E-15 99.3 2.5 100 269-381 10-118 (152)
86 1vmd_A MGS, methylglyoxal synt 98.9 2.5E-10 8.4E-15 100.6 1.7 100 269-381 26-134 (178)
87 2xw6_A MGS, methylglyoxal synt 98.8 1.1E-09 3.7E-14 92.7 1.5 109 271-395 4-122 (134)
88 3ufx_B Succinyl-COA synthetase 98.4 1.1E-06 3.8E-11 88.3 10.3 76 2-78 24-109 (397)
89 3t7a_A Inositol pyrophosphate 98.2 9.5E-07 3.2E-11 84.4 4.5 129 14-152 142-291 (330)
90 3tig_A TTL protein; ATP-grAsp, 98.0 9.5E-05 3.3E-09 73.3 15.4 152 16-176 146-359 (380)
91 3mwd_A ATP-citrate synthase; A 96.8 0.0031 1.1E-07 63.5 9.0 82 4-85 38-135 (425)
92 3pff_A ATP-citrate synthase; p 96.0 0.014 4.9E-07 63.3 8.3 81 4-85 38-135 (829)
93 3uhj_A Probable glycerol dehyd 94.6 0.029 9.9E-07 55.9 5.0 86 271-357 53-139 (387)
94 2q5c_A NTRC family transcripti 94.1 1 3.4E-05 40.2 13.6 128 271-414 5-140 (196)
95 1jq5_A Glycerol dehydrogenase; 93.8 0.042 1.4E-06 54.3 4.2 87 271-357 32-119 (370)
96 3bfj_A 1,3-propanediol oxidore 93.2 0.095 3.3E-06 52.0 5.7 87 271-357 34-143 (387)
97 3ox4_A Alcohol dehydrogenase 2 93.1 0.12 4.1E-06 51.3 6.2 87 271-357 32-139 (383)
98 3ce9_A Glycerol dehydrogenase; 92.9 0.094 3.2E-06 51.4 5.1 86 271-357 35-121 (354)
99 3okf_A 3-dehydroquinate syntha 92.5 0.32 1.1E-05 48.3 8.3 88 270-357 62-158 (390)
100 1o2d_A Alcohol dehydrogenase, 92.4 0.23 7.7E-06 49.0 7.2 87 271-357 41-149 (371)
101 1ta9_A Glycerol dehydrogenase; 92.2 0.11 3.9E-06 52.7 4.7 85 272-357 93-178 (450)
102 3hl0_A Maleylacetate reductase 92.1 0.062 2.1E-06 52.8 2.6 85 271-357 35-120 (353)
103 1sg6_A Pentafunctional AROM po 92.0 0.23 7.7E-06 49.5 6.6 87 271-357 37-140 (393)
104 3jzd_A Iron-containing alcohol 91.6 0.074 2.5E-06 52.3 2.5 85 271-357 37-122 (358)
105 1vlj_A NADH-dependent butanol 91.2 0.32 1.1E-05 48.5 6.8 85 271-357 44-152 (407)
106 1rrm_A Lactaldehyde reductase; 90.2 0.17 5.8E-06 50.1 3.6 87 271-357 32-141 (386)
107 2pju_A Propionate catabolism o 88.6 12 0.00042 33.8 14.6 112 291-414 30-152 (225)
108 3qbe_A 3-dehydroquinate syntha 87.6 0.76 2.6E-05 45.2 6.2 86 271-357 44-138 (368)
109 1xah_A Sadhqs, 3-dehydroquinat 87.1 0.64 2.2E-05 45.4 5.3 85 271-357 32-125 (354)
110 2gru_A 2-deoxy-scyllo-inosose 86.7 1.9 6.5E-05 42.2 8.5 86 271-357 35-129 (368)
111 1oj7_A Hypothetical oxidoreduc 85.6 0.69 2.4E-05 46.1 4.7 83 271-357 51-160 (408)
112 1g8m_A Aicar transformylase-IM 84.9 0.43 1.5E-05 49.1 2.8 50 270-333 5-54 (593)
113 1ujn_A Dehydroquinate synthase 83.2 1.2 4E-05 43.4 5.1 83 271-357 29-119 (348)
114 4ehi_A Bifunctional purine bio 82.3 0.73 2.5E-05 46.8 3.2 66 271-352 25-92 (534)
115 1v95_A Nuclear receptor coacti 81.2 2.9 9.8E-05 34.6 5.9 59 272-333 10-68 (130)
116 3zzm_A Bifunctional purine bio 80.3 0.96 3.3E-05 45.9 3.3 49 271-333 11-59 (523)
117 3n6x_A Putative glutathionylsp 80.1 1.9 6.5E-05 43.7 5.4 60 4-65 350-411 (474)
118 3iv7_A Alcohol dehydrogenase I 79.1 0.75 2.6E-05 45.2 2.0 83 271-357 38-121 (364)
119 3clh_A 3-dehydroquinate syntha 75.1 0.68 2.3E-05 45.1 0.4 50 308-357 65-120 (343)
120 1kq3_A Glycerol dehydrogenase; 75.0 0.31 1.1E-05 48.1 -2.1 84 271-357 42-127 (376)
121 4fn4_A Short chain dehydrogena 74.3 9.4 0.00032 35.2 8.1 55 280-335 38-94 (254)
122 3dbi_A Sugar-binding transcrip 73.6 44 0.0015 31.1 13.1 82 270-354 61-149 (338)
123 1jx6_A LUXP protein; protein-l 73.3 38 0.0013 31.6 12.5 107 247-354 16-134 (342)
124 3rf7_A Iron-containing alcohol 72.9 2.2 7.4E-05 42.1 3.4 84 271-357 54-160 (375)
125 4b4t_W RPN10, 26S proteasome r 72.0 28 0.00094 32.4 10.7 75 244-322 85-162 (268)
126 3kke_A LACI family transcripti 72.0 59 0.002 29.7 15.8 127 270-418 15-159 (303)
127 3kjx_A Transcriptional regulat 71.0 68 0.0023 29.9 14.7 105 247-354 39-153 (344)
128 1zcz_A Bifunctional purine bio 69.5 2.3 7.7E-05 42.4 2.7 44 279-333 19-62 (464)
129 3lft_A Uncharacterized protein 68.6 23 0.00078 32.6 9.5 83 271-356 3-91 (295)
130 3m9w_A D-xylose-binding peripl 67.7 74 0.0025 29.1 17.0 130 271-419 3-152 (313)
131 1m3s_A Hypothetical protein YC 66.5 20 0.0007 30.6 8.2 80 272-357 39-133 (186)
132 1mjh_A Protein (ATP-binding do 65.8 27 0.00091 28.7 8.6 70 284-357 83-160 (162)
133 1x60_A Sporulation-specific N- 65.8 36 0.0012 24.7 8.4 60 271-331 8-76 (79)
134 1jeo_A MJ1247, hypothetical pr 65.5 26 0.00088 29.7 8.6 78 272-356 42-134 (180)
135 2x5n_A SPRPN10, 26S proteasome 64.5 71 0.0024 27.7 11.9 74 243-321 83-159 (192)
136 3l49_A ABC sugar (ribose) tran 63.5 79 0.0027 28.3 12.1 84 269-354 4-92 (291)
137 1rvv_A Riboflavin synthase; tr 63.0 30 0.001 29.3 8.1 65 271-338 13-88 (154)
138 4g81_D Putative hexonate dehyd 62.7 13 0.00044 34.3 6.3 55 280-335 40-96 (255)
139 1qpz_A PURA, protein (purine n 61.8 88 0.003 29.1 12.4 106 247-354 29-144 (340)
140 3lkv_A Uncharacterized conserv 61.7 26 0.00089 32.6 8.5 85 270-356 8-98 (302)
141 1lyp_A CAP18; lipopolysacchari 61.0 15 0.00053 21.3 4.0 23 405-427 2-24 (32)
142 2pjk_A 178AA long hypothetical 60.6 32 0.0011 29.7 8.2 97 270-378 15-131 (178)
143 1hqk_A 6,7-dimethyl-8-ribityll 60.4 33 0.0011 29.0 7.9 60 271-333 13-79 (154)
144 2qv7_A Diacylglycerol kinase D 60.0 10 0.00036 36.2 5.4 72 283-358 41-116 (337)
145 3loq_A Universal stress protei 60.0 1E+02 0.0035 28.0 12.5 83 271-357 199-291 (294)
146 4g85_A Histidine-tRNA ligase, 59.9 46 0.0016 33.8 10.6 58 271-332 420-477 (517)
147 3sho_A Transcriptional regulat 57.8 54 0.0018 27.8 9.3 58 295-357 84-141 (187)
148 4fs3_A Enoyl-[acyl-carrier-pro 57.6 16 0.00055 33.2 6.1 33 271-303 6-38 (256)
149 2hsg_A Glucose-resistance amyl 56.6 1.2E+02 0.0042 27.9 12.5 105 247-354 31-145 (332)
150 1uta_A FTSN, MSGA, cell divisi 56.6 12 0.00041 27.7 4.1 60 271-330 8-75 (81)
151 3o74_A Fructose transport syst 56.5 1.1E+02 0.0036 27.1 13.4 82 270-354 2-88 (272)
152 3idf_A USP-like protein; unive 56.4 41 0.0014 26.6 7.8 54 284-343 66-119 (138)
153 3rfq_A Pterin-4-alpha-carbinol 55.6 30 0.001 30.2 7.1 97 270-378 30-136 (185)
154 3h5o_A Transcriptional regulat 55.4 83 0.0029 29.2 11.0 82 270-354 62-147 (339)
155 3l6u_A ABC-type sugar transpor 54.8 1.2E+02 0.004 27.2 14.1 85 269-355 7-96 (293)
156 1tq8_A Hypothetical protein RV 54.2 51 0.0017 27.3 8.3 71 283-357 80-159 (163)
157 3gbv_A Putative LACI-family tr 54.0 1.2E+02 0.0042 27.1 13.6 86 270-355 8-101 (304)
158 3g1w_A Sugar ABC transporter; 53.9 1.3E+02 0.0043 27.2 15.1 85 270-355 4-93 (305)
159 2qh8_A Uncharacterized protein 53.9 35 0.0012 31.4 7.8 83 270-355 8-97 (302)
160 3dlo_A Universal stress protei 53.5 57 0.0019 26.7 8.5 51 284-336 78-128 (155)
161 3sr3_A Microcin immunity prote 53.4 23 0.00079 34.0 6.6 67 270-336 13-90 (336)
162 2dum_A Hypothetical protein PH 53.2 47 0.0016 27.4 7.9 69 285-357 79-157 (170)
163 3rss_A Putative uncharacterize 53.0 82 0.0028 32.0 10.9 58 270-328 52-109 (502)
164 3tla_A MCCF; serine protease, 52.7 23 0.00078 34.6 6.4 68 270-337 43-121 (371)
165 3jy6_A Transcriptional regulat 52.6 1.3E+02 0.0043 26.8 12.0 81 269-354 6-91 (276)
166 1dbq_A Purine repressor; trans 52.6 94 0.0032 27.8 10.6 84 270-355 7-94 (289)
167 1vim_A Hypothetical protein AF 52.6 42 0.0014 29.2 7.7 81 272-358 49-144 (200)
168 3hs3_A Ribose operon repressor 52.5 1.3E+02 0.0044 26.9 11.6 125 269-417 9-149 (277)
169 3u7r_A NADPH-dependent FMN red 52.0 1.2E+02 0.004 26.3 11.0 95 271-367 3-123 (190)
170 4h1h_A LMO1638 protein; MCCF-l 52.0 33 0.0011 32.7 7.4 84 270-354 12-113 (327)
171 3egc_A Putative ribose operon 51.7 1.3E+02 0.0046 26.8 17.3 83 269-355 7-94 (291)
172 2gm3_A Unknown protein; AT3G01 51.2 49 0.0017 27.5 7.8 70 284-357 87-164 (175)
173 3s3t_A Nucleotide-binding prot 51.1 26 0.00089 28.1 5.8 53 284-340 69-123 (146)
174 3s99_A Basic membrane lipoprot 51.1 1.7E+02 0.0059 27.9 13.1 130 271-416 27-174 (356)
175 3s40_A Diacylglycerol kinase; 51.1 32 0.0011 32.3 7.1 71 283-358 25-99 (304)
176 3bil_A Probable LACI-family tr 50.9 1.6E+02 0.0054 27.5 13.4 82 270-354 66-151 (348)
177 3jvd_A Transcriptional regulat 50.6 1.6E+02 0.0053 27.3 13.9 123 270-418 64-202 (333)
178 3brs_A Periplasmic binding pro 50.4 1.4E+02 0.0047 26.6 11.5 85 270-354 5-96 (289)
179 3o1i_D Periplasmic protein TOR 50.3 78 0.0027 28.6 9.7 83 270-354 5-93 (304)
180 3sju_A Keto reductase; short-c 50.2 57 0.002 29.7 8.7 85 238-336 26-112 (279)
181 3ucx_A Short chain dehydrogena 50.1 55 0.0019 29.5 8.5 55 281-336 43-99 (264)
182 4e5s_A MCCFLIKE protein (BA_56 49.6 37 0.0013 32.5 7.3 99 270-376 12-128 (331)
183 3h7a_A Short chain dehydrogena 49.1 51 0.0017 29.6 8.0 54 282-336 40-94 (252)
184 1x92_A APC5045, phosphoheptose 48.0 78 0.0027 27.1 8.8 55 301-357 116-170 (199)
185 3qiv_A Short-chain dehydrogena 47.2 72 0.0025 28.3 8.7 54 281-335 41-96 (253)
186 2xhz_A KDSD, YRBH, arabinose 5 46.7 70 0.0024 26.9 8.1 52 301-357 99-150 (183)
187 4g84_A Histidine--tRNA ligase, 46.5 70 0.0024 31.7 9.2 58 271-332 367-424 (464)
188 2fvy_A D-galactose-binding per 46.4 97 0.0033 27.9 9.7 84 271-355 3-91 (309)
189 3fxa_A SIS domain protein; str 46.4 50 0.0017 28.5 7.2 80 272-357 47-146 (201)
190 3k9c_A Transcriptional regulat 45.6 1.7E+02 0.0057 26.2 13.4 126 270-418 12-153 (289)
191 3e3m_A Transcriptional regulat 45.3 1.1E+02 0.0038 28.6 10.1 82 270-354 70-155 (355)
192 2lci_A Protein OR36; structura 44.6 1E+02 0.0035 23.5 11.6 76 244-332 33-108 (134)
193 3etn_A Putative phosphosugar i 43.7 62 0.0021 28.6 7.5 81 271-357 60-162 (220)
194 2h3h_A Sugar ABC transporter, 43.6 1.9E+02 0.0064 26.2 12.4 82 272-354 3-88 (313)
195 3hcw_A Maltose operon transcri 43.3 1.8E+02 0.0063 26.0 12.8 83 269-354 6-97 (295)
196 2jah_A Clavulanic acid dehydro 43.2 81 0.0028 28.0 8.4 55 281-336 39-95 (247)
197 3tjr_A Short chain dehydrogena 43.1 73 0.0025 29.4 8.2 85 238-336 33-119 (301)
198 3ksm_A ABC-type sugar transpor 43.0 1.7E+02 0.0057 25.7 10.6 84 272-355 2-91 (276)
199 1zem_A Xylitol dehydrogenase; 42.8 95 0.0033 27.8 8.8 54 282-336 40-95 (262)
200 2dgd_A 223AA long hypothetical 42.2 74 0.0025 28.0 7.8 64 271-336 109-183 (223)
201 2afr_A Cobalamin biosynthesis 41.5 28 0.00096 31.5 4.6 59 338-397 148-210 (231)
202 3tfo_A Putative 3-oxoacyl-(acy 41.3 74 0.0025 28.9 7.8 84 239-336 7-92 (264)
203 3lyl_A 3-oxoacyl-(acyl-carrier 41.1 75 0.0025 28.1 7.7 54 282-336 38-93 (247)
204 2bon_A Lipid kinase; DAG kinas 41.1 76 0.0026 30.0 8.1 71 284-358 44-120 (332)
205 3gaf_A 7-alpha-hydroxysteroid 41.1 89 0.003 28.0 8.3 55 281-336 44-100 (256)
206 2xed_A Putative maleate isomer 40.7 1E+02 0.0036 28.2 8.8 81 271-353 147-238 (273)
207 2ae2_A Protein (tropinone redu 40.5 97 0.0033 27.6 8.5 54 282-336 42-98 (260)
208 3v8b_A Putative dehydrogenase, 40.1 89 0.003 28.6 8.3 84 239-336 31-116 (283)
209 1ae1_A Tropinone reductase-I; 40.1 93 0.0032 28.1 8.4 84 239-336 24-110 (273)
210 3r1i_A Short-chain type dehydr 39.7 80 0.0027 28.8 7.8 53 283-336 66-120 (276)
211 3miz_A Putative transcriptiona 39.7 2.1E+02 0.0072 25.7 13.3 83 269-354 12-98 (301)
212 3l77_A Short-chain alcohol deh 39.6 1.1E+02 0.0039 26.5 8.7 14 286-299 15-28 (235)
213 2iks_A DNA-binding transcripti 39.5 2.1E+02 0.0071 25.6 16.2 83 269-354 19-106 (293)
214 3rot_A ABC sugar transporter, 39.4 2.1E+02 0.0072 25.6 13.4 83 271-355 4-93 (297)
215 1zl0_A Hypothetical protein PA 39.4 66 0.0023 30.4 7.2 104 270-383 17-135 (311)
216 3rkr_A Short chain oxidoreduct 39.4 84 0.0029 28.1 7.9 84 238-335 31-116 (262)
217 3h75_A Periplasmic sugar-bindi 39.0 2.4E+02 0.0081 26.1 13.5 83 270-355 3-93 (350)
218 2fn9_A Ribose ABC transporter, 38.9 2.1E+02 0.007 25.4 10.6 82 271-354 3-89 (290)
219 1tjy_A Sugar transport protein 38.6 1.4E+02 0.0046 27.4 9.4 82 271-354 4-91 (316)
220 2l69_A Rossmann 2X3 fold prote 38.2 1.3E+02 0.0045 22.9 11.1 75 244-331 33-107 (134)
221 3gyb_A Transcriptional regulat 38.1 2E+02 0.0069 25.3 10.3 79 269-354 4-85 (280)
222 3imf_A Short chain dehydrogena 37.7 74 0.0025 28.5 7.1 53 282-335 39-93 (257)
223 3huu_A Transcription regulator 37.6 2.3E+02 0.0078 25.5 13.0 82 270-354 22-112 (305)
224 3c3k_A Alanine racemase; struc 37.5 2.2E+02 0.0075 25.3 14.1 82 269-354 7-92 (285)
225 3zyw_A Glutaredoxin-3; metal b 37.5 1.3E+02 0.0044 23.3 7.7 35 271-305 16-53 (111)
226 4fgs_A Probable dehydrogenase 37.5 58 0.002 30.1 6.4 58 272-336 55-114 (273)
227 1evl_A Threonyl-tRNA synthetas 37.4 2.1E+02 0.0072 27.6 10.9 57 271-332 299-355 (401)
228 3iwt_A 178AA long hypothetical 37.3 49 0.0017 28.2 5.5 67 269-338 14-94 (178)
229 2vk2_A YTFQ, ABC transporter p 36.8 2E+02 0.007 25.9 10.3 83 271-355 3-90 (306)
230 2rhc_B Actinorhodin polyketide 36.6 1.1E+02 0.0037 27.7 8.2 85 238-336 24-110 (277)
231 3a9s_A D-arabinose isomerase; 36.5 3.8E+02 0.013 27.7 12.8 110 270-383 11-144 (595)
232 2zat_A Dehydrogenase/reductase 36.4 1E+02 0.0034 27.5 7.9 54 282-336 47-102 (260)
233 4da9_A Short-chain dehydrogena 35.3 1.6E+02 0.0056 26.6 9.3 84 239-335 32-117 (280)
234 2prs_A High-affinity zinc upta 35.1 61 0.0021 30.0 6.2 63 292-354 187-252 (284)
235 3pk0_A Short-chain dehydrogena 35.1 91 0.0031 28.0 7.4 55 281-336 42-99 (262)
236 4eys_A MCCC family protein; MC 34.9 49 0.0017 31.8 5.6 84 271-354 6-111 (346)
237 3ftp_A 3-oxoacyl-[acyl-carrier 34.8 86 0.003 28.4 7.2 85 238-336 30-116 (270)
238 3fg9_A Protein of universal st 34.5 1.1E+02 0.0037 24.6 7.2 49 284-335 79-129 (156)
239 2rjo_A Twin-arginine transloca 34.4 2.7E+02 0.0092 25.4 13.0 84 270-355 5-95 (332)
240 3s81_A Putative aspartate race 34.1 66 0.0022 29.7 6.2 43 312-354 86-128 (268)
241 2qq5_A DHRS1, dehydrogenase/re 34.0 98 0.0033 27.6 7.4 53 281-334 37-92 (260)
242 1yb1_A 17-beta-hydroxysteroid 33.8 1.6E+02 0.0054 26.4 8.9 54 282-336 64-119 (272)
243 4ibo_A Gluconate dehydrogenase 33.7 68 0.0023 29.2 6.2 84 239-336 29-114 (271)
244 1v9c_A Precorrin-8X methyl mut 33.6 47 0.0016 29.7 4.8 100 275-383 69-184 (218)
245 3k4h_A Putative transcriptiona 33.6 2.5E+02 0.0086 24.8 11.3 83 269-354 7-98 (292)
246 3t7c_A Carveol dehydrogenase; 33.4 1.6E+02 0.0055 26.9 8.9 54 282-336 73-128 (299)
247 3tox_A Short chain dehydrogena 33.4 73 0.0025 29.1 6.4 55 281-336 40-96 (280)
248 1z0s_A Probable inorganic poly 33.3 68 0.0023 29.9 6.1 69 272-357 31-100 (278)
249 3pgx_A Carveol dehydrogenase; 33.2 1.6E+02 0.0056 26.4 8.9 54 282-336 61-116 (280)
250 3d8u_A PURR transcriptional re 33.0 2.5E+02 0.0085 24.6 13.0 82 270-354 3-88 (275)
251 1geg_A Acetoin reductase; SDR 32.9 1.3E+02 0.0044 26.7 8.0 84 239-336 5-90 (256)
252 1wu7_A Histidyl-tRNA synthetas 32.9 1E+02 0.0036 30.2 7.9 57 271-332 333-389 (434)
253 3d3k_A Enhancer of mRNA-decapp 32.8 93 0.0032 28.5 6.9 58 271-328 86-143 (259)
254 3lt0_A Enoyl-ACP reductase; tr 32.8 52 0.0018 30.9 5.4 33 271-303 2-34 (329)
255 2yva_A DNAA initiator-associat 32.8 2E+02 0.0067 24.3 8.9 53 301-357 112-166 (196)
256 4imr_A 3-oxoacyl-(acyl-carrier 32.5 75 0.0026 28.9 6.4 84 239-336 36-120 (275)
257 3svt_A Short-chain type dehydr 32.5 1.4E+02 0.0047 27.0 8.2 54 281-335 43-101 (281)
258 1byk_A Protein (trehalose oper 32.5 2.5E+02 0.0084 24.4 11.6 81 270-354 2-85 (255)
259 2x7x_A Sensor protein; transfe 32.5 2.9E+02 0.0099 25.1 10.8 82 270-354 6-93 (325)
260 1sfl_A 3-dehydroquinate dehydr 32.4 2.7E+02 0.0093 24.8 10.2 92 282-380 110-213 (238)
261 3e61_A Putative transcriptiona 32.4 1.6E+02 0.0055 26.0 8.6 62 270-333 8-72 (277)
262 1jzt_A Hypothetical 27.5 kDa p 32.3 93 0.0032 28.3 6.8 58 271-328 59-116 (246)
263 3oid_A Enoyl-[acyl-carrier-pro 32.3 1.5E+02 0.0052 26.4 8.4 54 281-335 37-92 (258)
264 2o20_A Catabolite control prot 32.0 3E+02 0.01 25.1 13.7 82 270-354 63-148 (332)
265 1vl8_A Gluconate 5-dehydrogena 31.9 1.4E+02 0.0049 26.8 8.1 84 239-336 24-110 (267)
266 2l69_A Rossmann 2X3 fold prote 31.8 1.7E+02 0.0059 22.3 8.5 44 273-322 3-46 (134)
267 3ff4_A Uncharacterized protein 31.3 66 0.0022 25.8 5.0 64 271-334 5-91 (122)
268 2dri_A D-ribose-binding protei 31.3 2.7E+02 0.0092 24.4 10.3 82 271-354 2-88 (271)
269 3nsx_A Alpha-glucosidase; stru 31.3 3.6E+02 0.012 28.2 12.0 94 235-332 132-238 (666)
270 3gv0_A Transcriptional regulat 31.1 2.8E+02 0.0096 24.6 13.8 83 269-354 7-95 (288)
271 3ai3_A NADPH-sorbose reductase 31.1 1.4E+02 0.0049 26.5 8.0 54 282-336 40-96 (263)
272 3a28_C L-2.3-butanediol dehydr 31.0 1.6E+02 0.0054 26.1 8.2 86 239-336 5-92 (258)
273 3gx8_A Monothiol glutaredoxin- 30.9 1.8E+02 0.0061 22.9 7.6 33 271-303 16-54 (121)
274 1iy8_A Levodione reductase; ox 30.9 1.3E+02 0.0045 26.9 7.7 84 239-336 16-103 (267)
275 3cxt_A Dehydrogenase with diff 30.9 1.2E+02 0.0043 27.7 7.6 85 238-336 36-122 (291)
276 3ksu_A 3-oxoacyl-acyl carrier 30.8 2.9E+02 0.0098 24.6 10.1 63 272-335 37-101 (262)
277 3uug_A Multiple sugar-binding 30.8 3E+02 0.01 24.8 12.7 84 270-355 3-91 (330)
278 3tsc_A Putative oxidoreductase 30.7 2E+02 0.0067 25.9 8.9 54 282-336 57-112 (277)
279 3msz_A Glutaredoxin 1; alpha-b 30.6 64 0.0022 23.1 4.5 39 280-318 11-49 (89)
280 2g3m_A Maltase, alpha-glucosid 30.6 4.6E+02 0.016 27.5 12.8 95 234-332 143-250 (693)
281 3oec_A Carveol dehydrogenase ( 30.6 1.5E+02 0.0051 27.5 8.2 54 282-336 91-146 (317)
282 3awd_A GOX2181, putative polyo 30.4 1.6E+02 0.0056 25.8 8.2 85 238-336 15-101 (260)
283 3i1j_A Oxidoreductase, short c 30.2 94 0.0032 27.3 6.5 55 281-335 46-104 (247)
284 3d3j_A Enhancer of mRNA-decapp 30.1 1.1E+02 0.0036 28.9 6.9 58 271-328 133-190 (306)
285 4e3z_A Putative oxidoreductase 30.1 2.1E+02 0.0071 25.6 9.0 86 238-336 28-115 (272)
286 3o26_A Salutaridine reductase; 29.7 73 0.0025 29.0 5.8 10 325-334 91-100 (311)
287 3olq_A Universal stress protei 29.7 1.2E+02 0.0041 27.7 7.4 70 285-357 74-151 (319)
288 2h3h_A Sugar ABC transporter, 29.7 1.6E+02 0.0055 26.7 8.2 82 244-333 104-190 (313)
289 2uvd_A 3-oxoacyl-(acyl-carrier 29.6 1.4E+02 0.0048 26.3 7.5 85 239-336 7-93 (246)
290 3v2g_A 3-oxoacyl-[acyl-carrier 29.4 2.5E+02 0.0085 25.2 9.4 85 239-336 34-120 (271)
291 1xq1_A Putative tropinone redu 29.4 1.3E+02 0.0044 26.7 7.4 85 238-336 16-103 (266)
292 3k6v_A Solute-binding protein 29.4 3.8E+02 0.013 25.5 11.3 29 275-303 46-76 (354)
293 1xkq_A Short-chain reductase f 29.3 1.5E+02 0.0052 26.7 7.9 84 239-336 9-97 (280)
294 4egf_A L-xylulose reductase; s 29.3 1.2E+02 0.004 27.3 7.0 84 239-336 23-109 (266)
295 1e7w_A Pteridine reductase; di 29.1 1.6E+02 0.0055 26.8 8.1 59 271-334 9-68 (291)
296 1wma_A Carbonyl reductase [NAD 28.8 1.3E+02 0.0045 26.5 7.3 51 283-334 39-91 (276)
297 3cx3_A Lipoprotein; zinc-bindi 28.8 1.5E+02 0.0052 27.2 7.8 65 292-356 190-257 (284)
298 4e51_A Histidine--tRNA ligase; 28.5 1.4E+02 0.0049 29.7 8.1 59 271-333 355-416 (467)
299 3op4_A 3-oxoacyl-[acyl-carrier 28.4 1.5E+02 0.0053 26.1 7.7 26 310-335 66-93 (248)
300 1efp_B ETF, protein (electron 28.3 3.3E+02 0.011 24.5 10.0 101 243-354 36-146 (252)
301 2p6n_A ATP-dependent RNA helic 28.3 2.5E+02 0.0087 23.8 8.8 55 271-332 55-111 (191)
302 2o8n_A APOA-I binding protein; 28.2 87 0.003 28.9 5.9 56 271-327 80-135 (265)
303 3pxx_A Carveol dehydrogenase; 28.1 2.8E+02 0.0097 24.7 9.6 52 283-335 56-109 (287)
304 3bbl_A Regulatory protein of L 27.9 3.2E+02 0.011 24.2 12.3 82 270-354 4-93 (287)
305 3ioy_A Short-chain dehydrogena 27.8 1.3E+02 0.0044 28.0 7.3 85 238-336 10-98 (319)
306 1sq1_A Chorismate synthase; st 27.8 92 0.0031 30.1 6.0 65 311-392 186-253 (370)
307 3gi1_A LBP, laminin-binding pr 27.7 1.6E+02 0.0053 27.3 7.7 64 292-356 192-260 (286)
308 1nvm_A HOA, 4-hydroxy-2-oxoval 27.7 1.2E+02 0.0041 28.9 7.0 50 279-328 115-165 (345)
309 3uh0_A Threonyl-tRNA synthetas 27.3 2.3E+02 0.008 28.1 9.3 89 236-333 315-420 (460)
310 1efv_B Electron transfer flavo 27.3 3.5E+02 0.012 24.5 11.0 102 242-354 38-149 (255)
311 3u5t_A 3-oxoacyl-[acyl-carrier 27.1 2.7E+02 0.0093 24.9 9.2 85 239-336 30-116 (267)
312 3is3_A 17BETA-hydroxysteroid d 27.1 2E+02 0.0067 25.8 8.2 85 239-336 21-107 (270)
313 3f1l_A Uncharacterized oxidore 27.0 1.5E+02 0.0053 26.2 7.4 26 310-335 75-102 (252)
314 3rih_A Short chain dehydrogena 27.0 1.2E+02 0.0043 27.8 6.9 53 283-336 75-130 (293)
315 3brq_A HTH-type transcriptiona 27.0 3.2E+02 0.011 24.0 10.1 83 270-354 19-107 (296)
316 3osu_A 3-oxoacyl-[acyl-carrier 26.9 2.5E+02 0.0084 24.6 8.7 55 281-336 37-93 (246)
317 2l2q_A PTS system, cellobiose- 26.8 1.6E+02 0.0055 22.7 6.5 37 272-309 6-44 (109)
318 1xhl_A Short-chain dehydrogena 26.8 1.8E+02 0.0061 26.7 7.9 85 238-336 28-117 (297)
319 3sx2_A Putative 3-ketoacyl-(ac 26.6 1.7E+02 0.006 26.1 7.8 53 283-336 59-113 (278)
320 3l4y_A Maltase-glucoamylase, i 26.5 3.2E+02 0.011 29.7 10.8 96 234-333 258-366 (875)
321 2fep_A Catabolite control prot 26.5 2.8E+02 0.0095 24.7 9.2 61 270-332 16-79 (289)
322 2b4q_A Rhamnolipids biosynthes 26.4 1.5E+02 0.0051 26.8 7.3 83 239-336 32-116 (276)
323 4h15_A Short chain alcohol deh 26.4 2E+02 0.0068 26.0 8.1 65 270-336 10-89 (261)
324 3uve_A Carveol dehydrogenase ( 26.2 2.1E+02 0.0071 25.8 8.3 54 282-336 60-115 (286)
325 2an1_A Putative kinase; struct 26.2 43 0.0015 31.0 3.4 82 271-357 6-96 (292)
326 2i0f_A 6,7-dimethyl-8-ribityll 26.2 2.9E+02 0.01 23.2 9.6 69 271-339 13-91 (157)
327 2vob_A Trypanothione synthetas 26.1 34 0.0012 36.0 3.0 44 19-65 544-588 (652)
328 1w6u_A 2,4-dienoyl-COA reducta 26.1 2.2E+02 0.0075 25.7 8.5 84 239-336 29-115 (302)
329 2bd0_A Sepiapterin reductase; 26.0 2.1E+02 0.0073 24.8 8.1 54 282-336 42-97 (244)
330 4hp8_A 2-deoxy-D-gluconate 3-d 26.0 2.3E+02 0.0079 25.6 8.3 56 270-333 8-63 (247)
331 1o97_C Electron transferring f 25.9 3.8E+02 0.013 24.4 10.1 103 241-353 34-144 (264)
332 1htt_A Histidyl-tRNA synthetas 25.9 2.3E+02 0.0079 27.4 9.0 56 272-332 329-386 (423)
333 1f2v_A COBH, precorrin-8X meth 25.8 46 0.0016 29.8 3.3 43 338-383 153-198 (219)
334 2ftp_A Hydroxymethylglutaryl-C 25.8 2.4E+02 0.0083 26.1 8.7 100 284-385 124-237 (302)
335 3net_A Histidyl-tRNA synthetas 25.8 1.5E+02 0.0051 29.5 7.6 57 271-332 372-428 (465)
336 3fst_A 5,10-methylenetetrahydr 25.7 4.1E+02 0.014 24.7 10.5 54 281-334 65-119 (304)
337 4iiu_A 3-oxoacyl-[acyl-carrier 25.7 2.1E+02 0.0072 25.4 8.1 86 238-336 28-115 (267)
338 3lft_A Uncharacterized protein 25.6 3.6E+02 0.012 24.1 11.5 113 270-401 133-254 (295)
339 3ixl_A Amdase, arylmalonate de 25.5 3.6E+02 0.012 24.0 11.3 62 271-335 118-191 (240)
340 4h3d_A 3-dehydroquinate dehydr 25.3 2.9E+02 0.01 25.0 8.9 92 281-380 123-228 (258)
341 4dry_A 3-oxoacyl-[acyl-carrier 25.2 1E+02 0.0034 28.2 5.8 84 239-336 36-122 (281)
342 1gud_A ALBP, D-allose-binding 25.2 3.6E+02 0.012 23.9 9.9 81 272-354 3-90 (288)
343 3tb6_A Arabinose metabolism tr 25.1 3.5E+02 0.012 23.8 14.8 82 271-354 16-105 (298)
344 1t5i_A C_terminal domain of A 25.0 2.9E+02 0.0099 22.7 8.4 55 271-332 32-88 (172)
345 4dmm_A 3-oxoacyl-[acyl-carrier 24.9 1.7E+02 0.006 26.2 7.4 85 239-336 31-117 (269)
346 3lf2_A Short chain oxidoreduct 24.8 2.3E+02 0.0077 25.2 8.1 54 281-335 40-97 (265)
347 3qvl_A Putative hydantoin race 24.8 50 0.0017 30.0 3.5 36 318-354 62-97 (245)
348 3trj_A Phosphoheptose isomeras 24.7 3.3E+02 0.011 23.3 12.7 115 233-357 46-171 (201)
349 1um0_A Chorismate synthase; be 24.7 1.2E+02 0.004 29.3 6.0 37 354-392 217-256 (365)
350 3kip_A 3-dehydroquinase, type 24.6 1E+02 0.0034 26.3 5.0 113 277-398 36-155 (167)
351 1q77_A Hypothetical protein AQ 24.4 85 0.0029 24.6 4.6 45 308-355 94-138 (138)
352 4fc7_A Peroxisomal 2,4-dienoyl 24.3 2.3E+02 0.0079 25.4 8.2 84 239-336 30-116 (277)
353 2qu7_A Putative transcriptiona 24.3 3.7E+02 0.013 23.7 13.7 79 270-355 8-91 (288)
354 2z1n_A Dehydrogenase; reductas 24.3 2.2E+02 0.0074 25.2 7.9 54 282-336 40-96 (260)
355 3s55_A Putative short-chain de 24.3 2.3E+02 0.008 25.3 8.2 53 283-336 56-110 (281)
356 2z08_A Universal stress protei 24.3 1.6E+02 0.0056 22.8 6.4 36 296-335 73-109 (137)
357 3icc_A Putative 3-oxoacyl-(acy 24.2 2.8E+02 0.0095 24.2 8.6 54 282-336 41-102 (255)
358 3apt_A Methylenetetrahydrofola 24.2 3.9E+02 0.013 24.9 9.8 55 281-335 55-109 (310)
359 3hly_A Flavodoxin-like domain; 24.1 1.5E+02 0.005 24.6 6.2 29 273-301 3-33 (161)
360 3hgm_A Universal stress protei 24.1 1.5E+02 0.0051 23.2 6.1 49 284-336 70-121 (147)
361 3lpp_A Sucrase-isomaltase; gly 24.0 3.7E+02 0.013 29.3 10.7 96 234-333 286-394 (898)
362 1qxo_A Chorismate synthase; be 24.0 1.1E+02 0.0038 29.8 5.9 63 312-391 198-265 (388)
363 1xg5_A ARPG836; short chain de 24.0 2.6E+02 0.009 24.9 8.5 86 238-336 34-122 (279)
364 1qe0_A Histidyl-tRNA synthetas 23.8 1.8E+02 0.006 28.3 7.6 57 271-332 330-386 (420)
365 3edm_A Short chain dehydrogena 23.8 2.3E+02 0.0077 25.2 7.9 54 282-336 42-97 (259)
366 2pju_A Propionate catabolism o 23.7 3.8E+02 0.013 23.7 10.4 76 239-331 85-160 (225)
367 3ksu_A 3-oxoacyl-acyl carrier 23.7 1.6E+02 0.0056 26.3 6.9 63 270-335 10-72 (262)
368 3ipz_A Monothiol glutaredoxin- 23.7 2.4E+02 0.0083 21.4 8.5 35 271-305 18-55 (109)
369 1bvy_F Protein (cytochrome P45 23.6 3.3E+02 0.011 23.3 8.6 39 348-386 69-113 (191)
370 2hjv_A ATP-dependent RNA helic 23.6 3E+02 0.01 22.3 8.3 55 271-332 36-92 (163)
371 3k31_A Enoyl-(acyl-carrier-pro 23.6 1.5E+02 0.0051 27.2 6.7 29 308-336 89-119 (296)
372 3pzy_A MOG; ssgcid, seattle st 23.5 2.7E+02 0.0092 23.3 7.8 72 270-345 7-90 (164)
373 2nx9_A Oxaloacetate decarboxyl 23.4 1.6E+02 0.0056 29.4 7.3 57 276-332 119-178 (464)
374 2ioy_A Periplasmic sugar-bindi 23.4 3.8E+02 0.013 23.6 10.4 81 272-354 3-88 (283)
375 1fmc_A 7 alpha-hydroxysteroid 23.3 1.9E+02 0.0064 25.3 7.2 85 238-336 13-99 (255)
376 2cw6_A Hydroxymethylglutaryl-C 23.3 2.2E+02 0.0075 26.3 7.8 41 281-322 153-195 (298)
377 3vtz_A Glucose 1-dehydrogenase 23.2 2.3E+02 0.0077 25.4 7.8 65 270-336 13-92 (269)
378 3ek2_A Enoyl-(acyl-carrier-pro 23.1 2.2E+02 0.0075 25.1 7.7 28 309-336 74-103 (271)
379 2i2w_A Phosphoheptose isomeras 23.0 1.7E+02 0.0059 25.3 6.7 51 301-356 134-184 (212)
380 1mkz_A Molybdenum cofactor bio 22.9 3.4E+02 0.012 22.8 10.9 73 270-345 10-93 (172)
381 1gee_A Glucose 1-dehydrogenase 22.7 2.3E+02 0.0077 24.9 7.6 86 238-336 9-96 (261)
382 1ydn_A Hydroxymethylglutaryl-C 22.6 4.4E+02 0.015 24.0 10.0 50 282-331 118-174 (295)
383 2q5c_A NTRC family transcripti 22.6 3.7E+02 0.013 23.1 9.1 76 239-331 73-148 (196)
384 1edo_A Beta-keto acyl carrier 22.4 2.2E+02 0.0074 24.7 7.4 85 239-336 4-90 (244)
385 3t4x_A Oxidoreductase, short c 22.3 1.9E+02 0.0065 25.8 7.1 53 281-336 42-96 (267)
386 5nul_A Flavodoxin; electron tr 22.3 2.8E+02 0.0096 21.6 7.6 37 347-383 46-86 (138)
387 8abp_A L-arabinose-binding pro 22.3 4.1E+02 0.014 23.5 12.3 81 272-355 4-89 (306)
388 1x1t_A D(-)-3-hydroxybutyrate 22.1 1.8E+02 0.0061 25.8 6.8 50 286-336 42-94 (260)
389 1fuk_A Eukaryotic initiation f 22.1 3.2E+02 0.011 22.2 8.8 56 271-333 31-88 (165)
390 1mxh_A Pteridine reductase 2; 21.9 1.9E+02 0.0064 25.9 6.9 54 282-336 45-105 (276)
391 3afn_B Carbonyl reductase; alp 21.8 2E+02 0.0067 25.1 7.0 49 286-335 45-95 (258)
392 1y88_A Hypothetical protein AF 21.8 1.6E+02 0.0055 25.8 6.1 41 111-151 18-69 (199)
393 1nyt_A Shikimate 5-dehydrogena 21.7 2.9E+02 0.01 24.9 8.3 45 271-322 119-163 (271)
394 3qlj_A Short chain dehydrogena 21.7 2E+02 0.0067 26.7 7.2 53 283-336 71-125 (322)
395 3u9l_A 3-oxoacyl-[acyl-carrier 21.5 2.2E+02 0.0076 26.5 7.6 86 239-335 8-97 (324)
396 1nvt_A Shikimate 5'-dehydrogen 21.3 2.1E+02 0.0073 26.1 7.3 43 271-321 128-170 (287)
397 1xu9_A Corticosteroid 11-beta- 21.3 2.9E+02 0.0098 24.8 8.2 83 238-334 30-116 (286)
398 3un1_A Probable oxidoreductase 21.2 2E+02 0.0067 25.7 6.9 64 271-336 28-107 (260)
399 1ydo_A HMG-COA lyase; TIM-barr 21.2 5E+02 0.017 24.1 10.0 49 284-332 122-177 (307)
400 2jvf_A De novo protein M7; tet 21.2 2.4E+02 0.0081 20.3 5.9 56 241-304 26-85 (96)
401 1gtz_A 3-dehydroquinate dehydr 20.8 2.1E+02 0.0072 24.1 6.2 77 277-357 28-108 (156)
402 1tzb_A Glucose-6-phosphate iso 20.8 4.3E+02 0.015 24.2 9.4 50 301-357 82-131 (302)
403 3gk3_A Acetoacetyl-COA reducta 20.8 1.8E+02 0.0063 25.9 6.6 85 239-336 28-114 (269)
404 2o11_A Chorismate synthase; sh 20.8 1.2E+02 0.0042 29.6 5.5 39 351-391 227-270 (407)
405 2c07_A 3-oxoacyl-(acyl-carrier 20.7 2.2E+02 0.0076 25.6 7.3 85 238-336 46-132 (285)
406 3tpc_A Short chain alcohol deh 20.7 2.4E+02 0.0082 24.9 7.4 26 311-336 65-92 (257)
407 1oaa_A Sepiapterin reductase; 20.6 2.1E+02 0.0073 25.2 7.0 88 238-336 8-103 (259)
408 2cfc_A 2-(R)-hydroxypropyl-COM 20.5 2.5E+02 0.0087 24.3 7.5 54 282-336 35-91 (250)
409 4fn4_A Short chain dehydrogena 20.5 4.7E+02 0.016 23.5 11.3 21 272-292 57-77 (254)
410 3clk_A Transcription regulator 20.5 2.7E+02 0.0091 24.7 7.7 83 270-354 8-94 (290)
411 1zxx_A 6-phosphofructokinase; 20.3 62 0.0021 30.8 3.2 23 282-304 78-100 (319)
412 2x9g_A PTR1, pteridine reducta 20.3 2.3E+02 0.008 25.5 7.3 86 238-336 25-117 (288)
413 3ppi_A 3-hydroxyacyl-COA dehyd 20.2 3E+02 0.01 24.6 8.0 77 239-332 33-110 (281)
414 3n6x_A Putative glutathionylsp 20.1 85 0.0029 31.6 4.3 24 129-152 144-167 (474)
415 3sc4_A Short chain dehydrogena 20.1 2E+02 0.0068 26.0 6.8 50 286-336 53-104 (285)
No 1
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=100.00 E-value=3.1e-51 Score=359.66 Aligned_cols=167 Identities=66% Similarity=1.035 Sum_probs=163.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
+.|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|+++++++|++|||++|||++|||+|++++|++|
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~P 93 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP 93 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013701 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKD 430 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (438)
|||||++++.++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|++.
T Consensus 94 VIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~l~~~ 173 (183)
T 1o4v_A 94 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQI 173 (183)
T ss_dssp EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhc
Q 013701 431 GWESYLN 437 (438)
Q Consensus 431 ~~~~~~~ 437 (438)
||+.|++
T Consensus 174 ~~~~~~~ 180 (183)
T 1o4v_A 174 GYKEYLN 180 (183)
T ss_dssp HHHHHHH
T ss_pred hHHHHHh
Confidence 9999974
No 2
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=100.00 E-value=5.5e-51 Score=355.88 Aligned_cols=165 Identities=65% Similarity=0.977 Sum_probs=160.4
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|+++++++|++|||++||+++|||+|++++|.
T Consensus 6 ~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 85 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATP 85 (174)
T ss_dssp CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013701 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (438)
+||||||++++.++|+|+||||+|||+||||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|+
T Consensus 86 ~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 165 (174)
T 3lp6_A 86 LPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQ 165 (174)
T ss_dssp SCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 013701 429 KDGWE 433 (438)
Q Consensus 429 ~~~~~ 433 (438)
+.||+
T Consensus 166 ~~~~~ 170 (174)
T 3lp6_A 166 RLAGK 170 (174)
T ss_dssp HHTC-
T ss_pred Hhhhh
Confidence 99985
No 3
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=7.3e-50 Score=347.24 Aligned_cols=161 Identities=43% Similarity=0.642 Sum_probs=156.1
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
..++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++|++|||++||+++|||++++++|+
T Consensus 5 ~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 84 (169)
T 3trh_A 5 NKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTL 84 (169)
T ss_dssp -CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCS
T ss_pred CCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
+||||||++++.++|+|+||||+|||+||||+||+|| |++|||++|+|||+++|++||+||++||++++++|++++++
T Consensus 85 ~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~ 164 (169)
T 3trh_A 85 KPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQQRTAKRETLKKADEN 164 (169)
T ss_dssp SCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred Hhh
Q 013701 427 LQK 429 (438)
Q Consensus 427 ~~~ 429 (438)
|++
T Consensus 165 l~~ 167 (169)
T 3trh_A 165 LQT 167 (169)
T ss_dssp HHH
T ss_pred Hhh
Confidence 864
No 4
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.4e-50 Score=347.21 Aligned_cols=158 Identities=53% Similarity=0.865 Sum_probs=154.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.++|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|.++++++|++|||++||+++|||+|++++|++
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 82 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTL 82 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
||||||++++.++|+|+||||+|||+||||+||+|| |++|||++|+|||+++|++||+||++||++++++|++++++|
T Consensus 83 PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l 162 (163)
T 3ors_A 83 PVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNEL 162 (163)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 999999988889999999999999999999999999 999999999999999999999999999999999999888765
No 5
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=100.00 E-value=2.2e-49 Score=343.90 Aligned_cols=158 Identities=59% Similarity=0.881 Sum_probs=150.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.+.|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|.++++++|++|||++|||++|||+|++++|++
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 90 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 90 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
||||||++++.++|+|+||||+|||+|+||+||+|| |++|||++|+|||+++|++||+||++||++++++|+++++++
T Consensus 91 PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~~~~~v~~~~~~~ 170 (170)
T 1xmp_A 91 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 170 (170)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999988889999999999999999999999999 999999999999999999999999999999999998877653
No 6
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=100.00 E-value=1.2e-48 Score=341.35 Aligned_cols=157 Identities=59% Similarity=0.883 Sum_probs=149.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++.|+|+|||+||++.++++++.|++||++|+++|+||||+|+++.+|+++++++|++|+|++||+++|||||++++|.+
T Consensus 22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T~~ 101 (181)
T 4b4k_A 22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL 101 (181)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTCCS
T ss_pred CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
||||||+.+..++|+|+|||++|||+||||+||+|| ++.|||++|+|||+++|++||+||+.||+++.++|+++++.
T Consensus 102 PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~r~~~~~~v~~~~e~ 180 (181)
T 4b4k_A 102 PVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSEL 180 (181)
T ss_dssp CEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988889999999999999999999999999 67999999999999999999999999999999998877653
No 7
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=100.00 E-value=5.6e-49 Score=342.64 Aligned_cols=157 Identities=53% Similarity=0.862 Sum_probs=151.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
.++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++|++|||++||+++|||++++++|++
T Consensus 12 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~ 91 (174)
T 3kuu_A 12 GVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLV 91 (174)
T ss_dssp CCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSS
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
||||||++++.++|+|+||||+|||+||||+||+|| |++|||++|+|||+++|++||+||++||+++.++|+++++.
T Consensus 92 PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~~~~~v~~~~~~ 170 (174)
T 3kuu_A 92 PVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPDP 170 (174)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 999999988889999999999999999999999999 99999999999999999999999999999999998876553
No 8
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=100.00 E-value=4.1e-49 Score=345.91 Aligned_cols=160 Identities=54% Similarity=0.799 Sum_probs=152.8
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
+.++|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|.++++++|++|||++|||++|||+|++++|.
T Consensus 20 ~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 99 (182)
T 1u11_A 20 SAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTR 99 (182)
T ss_dssp CCCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
+||||||++++.++|+|+||||+|||+|+||+||+|| |++|||++|+|||+++|++||+||++||++++++|++++++
T Consensus 100 ~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~ 179 (182)
T 1u11_A 100 LPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPIT 179 (182)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHSCSSCC-
T ss_pred CCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999988889999999999999999999999999 99999999999999999999999999999999998887776
Q ss_pred Hh
Q 013701 427 LQ 428 (438)
Q Consensus 427 ~~ 428 (438)
|+
T Consensus 180 l~ 181 (182)
T 1u11_A 180 ED 181 (182)
T ss_dssp --
T ss_pred hc
Confidence 64
No 9
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=100.00 E-value=1.1e-48 Score=338.81 Aligned_cols=156 Identities=53% Similarity=0.837 Sum_probs=150.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++|++|||++||+++|||+|++++|++|
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~P 85 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLP 85 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSSC
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC--cchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN--ATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEK 426 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~--~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (438)
|||||++++.++|+|+||||+|||+||||+||+||| ++|||++|+|||+++|++||+||++||++++++|++++++
T Consensus 86 VIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~ 163 (166)
T 3oow_A 86 VLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDP 163 (166)
T ss_dssp EEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999888899999999999999999999999995 9999999999999999999999999999999998876543
No 10
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=100.00 E-value=1e-47 Score=333.83 Aligned_cols=155 Identities=54% Similarity=0.824 Sum_probs=150.1
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP 348 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~ 348 (438)
+.++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|.++++++|++|+|++|||++|||||++++|+
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~ 90 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTT 90 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCC
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeC--CcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Q 013701 349 LPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAIN--NATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTK 423 (438)
Q Consensus 349 ~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~--~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (438)
+||||||++++.++|+|+|||++|||+||||+||.|| |++|||++|+|||+++|++||+||++||.++.++|+..
T Consensus 91 ~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~~~~~v~~~ 167 (173)
T 4grd_A 91 VPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVRQNEAAHAM 167 (173)
T ss_dssp SCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998899999999999999999999999998 89999999999999999999999999999999987653
No 11
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-47 Score=329.62 Aligned_cols=153 Identities=48% Similarity=0.755 Sum_probs=147.7
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEE
Q 013701 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVI 352 (438)
Q Consensus 273 v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI 352 (438)
|+|+|||+||++++++++..|+++|++|+++|+|+||+|+++.+|.+++++ +|+|++|||++|||+|++++|++|||
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa~Lpgvva~~t~~PVI 78 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPVI 78 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC---SEEEEEEESSCCHHHHHHTTCSSCEE
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC---CEEEEEcCchhhhHHHHHhccCCCEE
Confidence 789999999999999999999999999999999999999999999987754 99999999999999999999999999
Q ss_pred EecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013701 353 GVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQK 429 (438)
Q Consensus 353 ~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (438)
|||+ +..++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|++
T Consensus 79 gVP~-~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~~ 154 (157)
T 2ywx_A 79 AVPV-DAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREKMKKKVYASDEKVKE 154 (157)
T ss_dssp EEEE-CSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecC-CCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999 678999999999999999999999999999999999999999999999999999999999999999987864
No 12
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=100.00 E-value=1.6e-47 Score=330.87 Aligned_cols=155 Identities=29% Similarity=0.435 Sum_probs=148.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc-CCeEEEEEcCCCCCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAAHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ag~~~~l~~~i~~~~~~ 349 (438)
++|+|+|||+||+++++++++.|++||++|+++|+|+||+|+++.+|+++++++ |++|||++||+++|||++++++|++
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 579999999999999999999999999999999999999999999999999886 7999999999999999999999999
Q ss_pred CEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013701 350 PVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQ 428 (438)
Q Consensus 350 pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (438)
||||||++++.++|+| ||||+|||+||||+|| ||++|||++|+|||+++|++||+||++||++++++|++++++|+
T Consensus 83 PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv--~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~~~v~~~~~~l~ 158 (159)
T 3rg8_A 83 ATIACPPPSDSFAGAD-IYSSLRMPSGISPALV--LEPKNAALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLK 158 (159)
T ss_dssp CEEECCCCCCGGGGTH-HHHHHCCCTTCCCEEC--CSHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEe--cCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888899999 9999999999999998 79999999999999999999999999999999999999988774
No 13
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=1.1e-41 Score=340.37 Aligned_cols=240 Identities=31% Similarity=0.468 Sum_probs=216.6
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCC--HHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCC
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKS--EEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~--~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.++|.+|+.++++++|||+||||+.+|++|+|+++++| ++|+.+++ .+ .++||+||++++|+++.++++.+|
T Consensus 99 ~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~~---~vivEe~I~~~~Eisv~v~~~~~G 172 (355)
T 3eth_A 99 LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---YG---ECIVEQGINFSGEVSLVGARGFDG 172 (355)
T ss_dssp EECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---TT---TEEEEECCCCSEEEEEEEEECTTS
T ss_pred EECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---hC---CEEEEEccCCCcEEEEEEEEcCCC
Confidence 35788999999999999999999877779999999999 99998754 22 499999999779999999999999
Q ss_pred eEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcce
Q 013701 80 SILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTI 159 (438)
Q Consensus 80 ~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~ 159 (438)
++..+|+.++++.+|++..+++|+.+++++.+++++++.+++++||++|++++|||+++ |++||+|+|||++++++|++
T Consensus 173 ~~~~~p~~e~~~~~g~~~~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~t~ 251 (355)
T 3eth_A 173 STVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP-QGLLINELAPRVHNSGHWTQ 251 (355)
T ss_dssp CEEECCCEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHH
T ss_pred CEEEECCEEEEeeCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccEEe
Confidence 99999999988888988888888899999999999999999999999999999999986 57999999999999999999
Q ss_pred eeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEE
Q 013701 160 ESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHI 239 (438)
Q Consensus 160 ~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~V 239 (438)
.++++|+|++|+|+++|+|++++... .+++|++++|.. ..++++..|+|++|+||+ +.+++|+||||
T Consensus 252 ~~~~~s~fe~~~ra~~G~pl~~~~~~-~~~~m~nilg~~-----------~~~~~~~~p~~~~~~ygk-~~r~~rkmGhv 318 (355)
T 3eth_A 252 NGASISQFELHLRAITDLPLPQPVVN-NPSVMINLIGSD-----------VNYDWLKLPLVHLHWYDK-EVRPGRKVGHL 318 (355)
T ss_dssp HHSSSCHHHHHHHHHTTCCCCCCCCC-SCEEEEEEESCC-----------CCGGGGGSTTCEEEECCC-CCCTTCEEEEE
T ss_pred eeecCCHHHHHHHHHcCCCCCCcccc-CceEEEEEecch-----------HHHHHHhCCCCEEEEcCC-CCCCCCeeEEE
Confidence 99999999999999999999887653 458999999864 123456789999999999 89999999999
Q ss_pred EEecCCHHHHHHHHHHHhhhcc
Q 013701 240 TIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 240 i~~G~~~~ea~~ka~~~~~~i~ 261 (438)
+++|+|.++++++++++.+.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 319 NLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEECSCHHHHHHHHHHHGGGSC
T ss_pred EEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 14
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=3.2e-41 Score=343.51 Aligned_cols=250 Identities=44% Similarity=0.740 Sum_probs=224.5
Q ss_pred CHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEE
Q 013701 5 DLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCY 84 (438)
Q Consensus 5 s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~ 84 (438)
+.+|+.++++++|||+||||..++|+|+|+++++|++|+.++++.+.+ ..+++|+||++++|+++.++++.+| +..+
T Consensus 148 ~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~--~~~lvEe~i~~~~E~sv~v~~~~~g-~~~~ 224 (403)
T 3k5i_A 148 TPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKD--RPLYAEKWAYFKMELAVIVVKTKDE-VLSY 224 (403)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTT--SCEEEEECCCEEEEEEEEEEECSSC-EEEC
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCC--CcEEEecCCCCCeEEEEEEEEcCCC-EEEe
Confidence 899999999999999999998776789999999999999999988754 4599999999779999999998888 8889
Q ss_pred eeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeecc
Q 013701 85 PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCY 163 (438)
Q Consensus 85 ~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~ 163 (438)
++.++.+.++.+..++.|++ +++++.+++++++.+++++||++|++++||+++++|++||+|+|||+|+++++++.+++
T Consensus 225 p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~ 304 (403)
T 3k5i_A 225 PTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCA 304 (403)
T ss_dssp CCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHHBS
T ss_pred CCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeeecC
Confidence 99888888888888889999 99999999999999999999999999999999988999999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCCCCCCC-CCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEEe
Q 013701 164 TSQFEQHMRAVVGLPLGDPSMK-TPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV 242 (438)
Q Consensus 164 ~~~~~~~l~~~~G~~l~~~~~~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~~ 242 (438)
+|+|++|+|+++|+|++.+... ..+++|++++|...+...++ ++++++..|+|++++||+++.+++|+||||+++
T Consensus 305 ~s~~~~~~ra~~G~pl~~~~~~~~~~a~m~nilg~~~~~~~~~----~~~~~~~~p~~~~~~ygk~~~~~~rkmGhv~~~ 380 (403)
T 3k5i_A 305 LSQFDAHLRAILDLPIPAQSLEIRQPSIMLNIIGGAAPDTHLQ----AAECALSIPNASIHLYSKGAAKPGRKMGHITVT 380 (403)
T ss_dssp SCHHHHHHHHHTTCCCCGGGGSBSSCEEEEEEECCSSSSHHHH----HHHHHTTSTTEEEEECCCCSCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCCCcccccCCCcEEEEEEecCCccccchh----HHHHHhcCCCCEEEECCCCCCCCCCeeEEEEEE
Confidence 9999999999999999876543 23488999998653321233 677788899999999999889999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcc
Q 013701 243 GSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 243 G~~~~ea~~ka~~~~~~i~ 261 (438)
|+|.++|++++.++.+.++
T Consensus 381 ~~~~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 381 APTMHEAETHIQPLIDVVD 399 (403)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhhh
Confidence 9999999999999988765
No 15
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=1.9e-40 Score=339.27 Aligned_cols=252 Identities=31% Similarity=0.479 Sum_probs=226.0
Q ss_pred cccCHHHHHHHHHh----hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEec
Q 013701 2 EVNDLESAWRAGKQ----FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 2 ~v~s~ee~~~~~~~----igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
.+++.+|+.+++++ + ||+||||...|++|+|+++++|++|+.++++.+.. +.+++||||++++|+++.+++|.
T Consensus 153 ~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~--~~~lvEe~i~~~~Eisv~v~~~~ 229 (419)
T 4e4t_A 153 VIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGG--VPCVLEKRLPLKYEVSALIARGA 229 (419)
T ss_dssp EECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTT--CCEEEEECCCEEEEEEEEEEECT
T ss_pred EECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCC--CcEEEeecCCCCeEEEEEEEEcC
Confidence 36788999999988 9 99999997567799999999999999999988744 44999999997799999999999
Q ss_pred CCeEEEEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013701 78 DKSILCYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 78 ~G~~~~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
+|++..+++.++.+.++.+..++.|++ +++++.+++++++.+++++||++|++++||+++++|++||+|||||++++++
T Consensus 230 ~G~~~~~~~~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 230 DGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGH 309 (419)
T ss_dssp TSCEEECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGT
T ss_pred CCCEEEEeCeEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCC
Confidence 999999999998888888888888998 9999999999999999999999999999999998889999999999999999
Q ss_pred cceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEecccccc------CCCccchhhhHHHHHcCCCcEEEecccccc
Q 013701 157 HTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEG------ERGFYLAHQLIGKALSIPGATVHWYDKPEM 230 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~------~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~ 230 (438)
++..++++|+|++|+|+++|+|++.+.. ..+++|++++|.... ...++ ++++++..|+|++++||+++.
T Consensus 310 ~t~~~~~~s~~~~~~ra~~G~pl~~~~~-~~~~~m~n~lg~~~~~~~~~~~~~~~----~~~~~l~~p~~~~~~ygk~~~ 384 (419)
T 4e4t_A 310 YTVDACATSQFEQQVRAMTRMPLGNPRQ-HSPAAMLNILGDVWFPNGAAAGAVTP----PWDTVAAMPAAHLHLYGKEEA 384 (419)
T ss_dssp THHHHBSSCHHHHHHHHHTTCCCCCCCB-CSCEEEEEEEGGGGCTTCGGGCCCCC----CHHHHHTSTTEEEEECCCSCC
T ss_pred eEeeccCCCHHHHHHHHHcCCCCCCccc-cCCeEEEEEecCccccccccccccch----HHHHHHhCCCCEEEECCCCCC
Confidence 9999999999999999999999988765 345889999986321 11233 677888899999999999888
Q ss_pred cCCceeEEEEEecCCHHHHHHHHHHHhhhcc
Q 013701 231 RQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 231 ~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
+++|+||||+++|+|.++|+++++++.+.+.
T Consensus 385 ~~~rkmGhv~~~~~~~~~~~~~a~~~~~~l~ 415 (419)
T 4e4t_A 385 RVGRKMGHVNFTAEMRDDAVAAATACAQLLR 415 (419)
T ss_dssp CTTCEEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEEeCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988765
No 16
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=4.3e-40 Score=332.38 Aligned_cols=239 Identities=33% Similarity=0.567 Sum_probs=214.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
+++.+|+.++++++|||+||||..++|+|+|+++++|++|+.++++.+...+ +++|+||+|.+|+++.++++.+|++.
T Consensus 131 ~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~--~ivEe~i~g~~E~sv~~~~~~~g~~~ 208 (377)
T 3orq_A 131 VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSLTVTRGNNNQIT 208 (377)
T ss_dssp ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSC--EEEEECCCEEEEEEEEEEECGGGCEE
T ss_pred ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCc--EEEEccCCCCEEEEEEEEEeCCCCEE
Confidence 5688899999999999999999877678999999999999999999887644 99999999879999999988889999
Q ss_pred EEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeec
Q 013701 83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC 162 (438)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~ 162 (438)
.+++.++.+.++.+..++.|+.+++ .+++++++.+++++||++|++++||+++++|++||+|+|||+|++++|++.++
T Consensus 209 ~~~~~e~~~~~g~~~~~~~Pa~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~ 286 (377)
T 3orq_A 209 FFPLQENEHRNQILFKTIVPARIDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEAC 286 (377)
T ss_dssp ECCCEEEEEETTEEEEEEESCSSCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHB
T ss_pred EECCEeEEEECCEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhc
Confidence 9999998888888888888998887 88999999999999999999999999998889999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCC-CCCCCCceEEEEeccccccCCCccchhhhHHHHHc-CCCcEEEecccccccCCceeEEEE
Q 013701 163 YTSQFEQHMRAVVGLPLGD-PSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALS-IPGATVHWYDKPEMRQQRKMGHIT 240 (438)
Q Consensus 163 ~~~~~~~~l~~~~G~~l~~-~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~-~pg~~~~~~~~~~~~~g~~iG~Vi 240 (438)
++|+|++|+|+++|+|+++ +.. ..+++|.+++|.. ++ ++.+++. .|+|++|+|||++.+++|+||||+
T Consensus 287 ~~s~f~~~~ra~~G~pl~~~~~~-~~~~~m~n~lg~~-----~~----~~~~~~~~~~~~~~~~ygk~~~~~~rkmGhv~ 356 (377)
T 3orq_A 287 DYSQFDTHILAVTGQSLPNSIEL-LKPAVMMNLLGKD-----LD----LLENEFNEHPEWHLHIYGKSERKDSRKMGHMT 356 (377)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCCB-SSCEEEEEEEHHH-----HH----HHGGGGGGCGGGCEEECCCSSCCTTSEEEEEE
T ss_pred CCCHHHHHHHHHcCCCCCccccc-cccEEEEEEeCcc-----ch----hHHHHHhhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 9999999999999999987 654 3458999999853 12 4445555 699999999998899999999999
Q ss_pred EecCCHHHHHHHHHH
Q 013701 241 IVGSSMGLVESRLNS 255 (438)
Q Consensus 241 ~~G~~~~ea~~ka~~ 255 (438)
++|+|.+++++++..
T Consensus 357 ~~~~~~~~~~~~~~~ 371 (377)
T 3orq_A 357 VLTNDVNQTEQDMYA 371 (377)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEcCCHHHHHHHhHH
Confidence 999999999988754
No 17
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=1.8e-39 Score=329.15 Aligned_cols=247 Identities=38% Similarity=0.598 Sum_probs=219.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSI 81 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~ 81 (438)
.+++.+|+.++++++|||+||||+.++++|+|+++++|++|+.++++.+...+ ++||+||+|++|+++.++++.+|++
T Consensus 132 ~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~--~lvEe~i~g~~E~~v~~~~~~~G~~ 209 (389)
T 3q2o_A 132 LVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAE--CILEKWVPFEKEVSVIVIRSVSGET 209 (389)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSC--EEEEECCCCSEEEEEEEEECTTCCE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCC--EEEEecccCceEEEEEEEEcCCCCE
Confidence 36789999999999999999999887656899999999999999998775444 9999999988999999999888999
Q ss_pred EEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceee
Q 013701 82 LCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 82 ~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~ 161 (438)
..+++.++.+..+.+..++.|+.++++..+++++++.+++++||++|++++||+++++|++||+|+|||+|++++++..+
T Consensus 210 ~~~~~~e~~~~~g~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~ 289 (389)
T 3q2o_A 210 KVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDA 289 (389)
T ss_dssp EECCCEEEEEETTEEEEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHH
T ss_pred EEecCeeeEEcCCceEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHH
Confidence 99999998888888888888999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHH-HHcCCCcEEEecccccccCCceeEEEE
Q 013701 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGK-ALSIPGATVHWYDKPEMRQQRKMGHIT 240 (438)
Q Consensus 162 ~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~-~~~~pg~~~~~~~~~~~~~g~~iG~Vi 240 (438)
+++|+|++++++++|+|++++... .+++|.++++.. ++ .... +.+.|+|++++||+.+.+++|+||||+
T Consensus 290 ~g~~~~~~~~r~~lg~~l~~~~~~-~~~~~~~~~g~~-----~~----~~~~~~~~~p~~~~~lygk~~~~~~r~~G~v~ 359 (389)
T 3q2o_A 290 CETSQFGQHIRAICNLPLGETNLL-KPVVMVNILGEH-----IE----GVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVN 359 (389)
T ss_dssp BSSCHHHHHHHHHHTCCCCCCCBC-SCEEEEEEEHHH-----HH----HHHHTGGGCTTEEEEECCCSSCCTTSEEEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCcccc-CcEEEEEEecCc-----hh----hHHHHHHhCCCCEEEECCCCCCCCCCeeEEEE
Confidence 999999999999999999886643 457888988742 11 2222 347899999999998888899999999
Q ss_pred EecCCHHHHHHHHHHHhhhc
Q 013701 241 IVGSSMGLVESRLNSLLKED 260 (438)
Q Consensus 241 ~~G~~~~ea~~ka~~~~~~i 260 (438)
++|+|+++|+.++....-|.
T Consensus 360 ~~~~~~~~a~~~a~~~~~w~ 379 (389)
T 3q2o_A 360 ILNDNIEVALEKAKSLHIWD 379 (389)
T ss_dssp EECSSHHHHHHHHHHTTSCH
T ss_pred EEcCCHHHHHHHHHHhCccc
Confidence 99999999999998877664
No 18
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=332.36 Aligned_cols=159 Identities=23% Similarity=0.381 Sum_probs=153.0
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCC-eEEEEEcCCCCCchhhhhcCC
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGI-EIIIAGAGGAAHLPGMVAART 347 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~-~v~i~~ag~~~~l~~~i~~~~ 347 (438)
..++|+|+|||+||++++++++..|+++|++|+++|+||||+|+++.+|.++++++|+ +|+|++|||++|||+|++++|
T Consensus 264 ~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t 343 (425)
T 2h31_A 264 SQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNT 343 (425)
T ss_dssp CCCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHC
T ss_pred CCCeEEEEecCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccC
Confidence 3579999999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred CCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013701 348 PLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 348 ~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
.+||||||++ ..++|+||||||+|||+|+||+||+ +++|||++|+|||+++|+.||+||++||++++++|.+++++|
T Consensus 344 ~~PVIgvP~~-~~~~G~daLls~vqmp~g~pvatv~--~~~nAa~~A~~Il~~~~~~l~~kl~~~~~~~~~~v~~~~~~l 420 (425)
T 2h31_A 344 AYPVISCPPL-TPDWGVQDVWSSLRLPSGLGCSTVL--SPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKI 420 (425)
T ss_dssp SSCEEECCCC-CTTTHHHHGGGTSSCCSSCCCEECC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeCc-cccccHHHHHHHhcCCCCCceEEec--CchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999996 6799999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred hhh
Q 013701 428 QKD 430 (438)
Q Consensus 428 ~~~ 430 (438)
+..
T Consensus 421 ~~~ 423 (425)
T 2h31_A 421 REC 423 (425)
T ss_dssp HTT
T ss_pred hhc
Confidence 753
No 19
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=1.6e-37 Score=350.17 Aligned_cols=345 Identities=17% Similarity=0.182 Sum_probs=267.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.++|.+|+.++++++|||+||||++++ ||+||.+|+|++|+.++++.+.. ....++||+||+|.+|+++++++|++
T Consensus 694 ~~~s~eea~~~~~~ig~PvvVKP~~~~-gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~- 771 (1073)
T 1a9x_A 694 TVTAIEMAVEKAKEIGYPLVVRASYVL-GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE- 771 (1073)
T ss_dssp ECCSHHHHHHHHHHHCSSEEEEC--------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSS-
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECC-
Confidence 367899999999999999999998755 89999999999999999988753 23569999999996699999998754
Q ss_pred eEEEEeeeeeEEec----CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013701 80 SILCYPVVETIHKE----NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~----g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
.+..+++++++... |+....++|..++++..+++++++.+++++||++|++++||+++ +|++||+|+|||++++.
T Consensus 772 ~v~~~~i~e~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~ 850 (1073)
T 1a9x_A 772 MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTV 850 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTH
T ss_pred eEEEEeeEEEEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHH
Confidence 57777877765443 33344455557999999999999999999999999999999996 67899999999999876
Q ss_pred CcceeeccCcHHHHHHHHHhCCCCCCCCC-----CCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccc
Q 013701 156 HHTIESCYTSQFEQHMRAVVGLPLGDPSM-----KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEM 230 (438)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~G~~l~~~~~-----~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~ 230 (438)
++...++|+|+++.+++.++|.++++... ....++-..+. . +.++++++..+ |+ ++
T Consensus 851 ~~~~~~tGi~l~~~~~~~~~G~~l~~~~~~~~~~~~~~~vk~~~~-------~----------f~~~~~~d~~l-g~-~~ 911 (1073)
T 1a9x_A 851 PFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVL-------P----------FNKFPGVDPLL-GP-EM 911 (1073)
T ss_dssp HHHHHHHSCCHHHHHHHHHTTCCHHHHTCCSCCCCSSEEEEEEEC-------G----------GGGCTTSCCCC-CS-SC
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCchhcccCcCcCCCeEEEEeccC-------C----------cccCCCCcCCC-CC-cc
Confidence 66667889999999999999998754211 00111111111 1 12456666544 32 45
Q ss_pred cCCceeEEEEEecCCHHHHHHHHHHHhhh-ccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 013701 231 RQQRKMGHITIVGSSMGLVESRLNSLLKE-DSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHR 309 (438)
Q Consensus 231 ~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~-i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~ 309 (438)
+++|+|+++|.|+++|+.++..+... ++ +.+++ +++.++.|++.+.+.++.|.++||++.+| .+
T Consensus 912 ---~stGev~g~~~~~~~a~~ka~~~~~~~~p-------~~g~v-lisv~d~~K~~~~~~a~~l~~~G~~i~aT----~g 976 (1073)
T 1a9x_A 912 ---RSTGEVMGVGRTFAEAFAKAQLGSNSTMK-------KHGRA-LLSVREGDKERVVDLAAKLLKQGFELDAT----HG 976 (1073)
T ss_dssp ---CCCEEEEEEESSHHHHHHHHHHHTTCCCC-------SSSEE-EEECCGGGGTTHHHHHHHHHHTTCEEEEC----HH
T ss_pred ---cccCceEEecCCHHHHHHhhHHhccCCCC-------CcceE-EEEecCcCHHHHHHHHHHHHHCCCEEEEc----Cc
Confidence 78999999999999999999998863 32 35677 88889999999999999999999999998 77
Q ss_pred ChhHHHHHHHHHhhcCCeEEEEEc--CCCCCchhhhhcCCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEE-EEeC
Q 013701 310 TPDLMFSYASSAHERGIEIIIAGA--GGAAHLPGMVAARTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVAT-VAIN 385 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~v~i~~a--g~~~~l~~~i~~~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~t-v~i~ 385 (438)
|.+|+ +++|++|..+.+ .+.+++.++|..+....|||+|.. ....||+. +|+.++..||||.| +.
T Consensus 977 ----Ta~~l---~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~a~~~~~~~~t~~~-- 1045 (1073)
T 1a9x_A 977 ----TAIVL---GEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRV--IRRSALQYKVHYDTTLN-- 1045 (1073)
T ss_dssp ----HHHHH---HTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHH--HHHHHHHTTCEEESSHH--
T ss_pred ----hHHHH---HhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCCCcccccchHH--HHHHHHHhCCCEEccHH--
Confidence 88999 667999988876 567899999999999999999975 23356766 99999999999994 43
Q ss_pred CcchHHHHHH
Q 013701 386 NATNAGLLAV 395 (438)
Q Consensus 386 ~~~~Aa~~a~ 395 (438)
+..|++.|+
T Consensus 1046 -~~~~~~~~~ 1054 (1073)
T 1a9x_A 1046 -GGFATAMAL 1054 (1073)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 445555554
No 20
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-34 Score=289.11 Aligned_cols=244 Identities=40% Similarity=0.660 Sum_probs=208.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
+++.+|+.++++++|||+|+||..++|+|+||++++|++|+.++++.+. ...+++||||++++|+++.+++|.+|++.
T Consensus 117 ~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--~~~~lvEe~i~~g~e~sv~~~~d~~G~~~ 194 (369)
T 3aw8_A 117 VDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG--GRGLILEGFVPFDREVSLLAVRGRTGEVA 194 (369)
T ss_dssp ESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTC--SSSEEEEECCCCSEEEEEEEEECTTSCEE
T ss_pred eCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC--CCcEEEEEcCCCCEEEEEEEEECCCCCEE
Confidence 5789999999999999999999765448999999999999999988764 34599999999449999999998888988
Q ss_pred EEeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceee
Q 013701 83 CYPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIES 161 (438)
Q Consensus 83 ~~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~ 161 (438)
.++..+.....+.....+.|++ ++++..+++++++.+++++||++|++++||++++ |++|++|+|||++++++++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~~ 273 (369)
T 3aw8_A 195 FYPLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIEG 273 (369)
T ss_dssp ECCCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHH
T ss_pred EECCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeeee
Confidence 8888887767777666788998 9999999999999999999999999999999987 7899999999999999988888
Q ss_pred ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEE
Q 013701 162 CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITI 241 (438)
Q Consensus 162 ~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~ 241 (438)
++.|+|+.++++++|.+++..... .+++++++++.. + .++.+...|++++++|++ ..++++++|+|++
T Consensus 274 ~g~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~------~----~~~~~~~~p~~~~~~~g~-~~~~~~~lg~v~~ 341 (369)
T 3aw8_A 274 AETSQFENHLRAVLGLPLGSTAPR-GQSAMVNLIGEK------P----PFAEVLKVEGAHLHWYGK-AVRPGRKVGHITL 341 (369)
T ss_dssp BSSCHHHHHHHHHHTCCCCCCCBC-SEEEEEEEESCC------C----CHHHHHTSTTEEEEECCC-CCCTTCEEEEEEE
T ss_pred ecCCHHHHHHHHHcCCCCCCcccc-ccEEEEEEeCCC------c----hHHHhccCCCcEEEEecC-CCCCCCeEEEEEE
Confidence 899999999999999999876543 447778877653 1 344556679998889988 7788899999999
Q ss_pred ecCCHHHHHHHHHHHhhhcc
Q 013701 242 VGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~ 261 (438)
.|+|.++|+++++++.++++
T Consensus 342 ~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 342 RRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp EESSHHHHHHHHHHHHTTSS
T ss_pred EcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 21
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-34 Score=289.34 Aligned_cols=244 Identities=45% Similarity=0.745 Sum_probs=199.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
+++.+| +++++|||+|+||..++|+|+|+++++|++|+.++++ ..+++||||++++|+++.++++.+|++.
T Consensus 121 ~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------~~~lvEe~i~~g~e~sv~~~~~~~G~~~ 191 (380)
T 3ax6_A 121 VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------GETYLEEFVEIEKELAVMVARNEKGEIA 191 (380)
T ss_dssp CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC------SSEEEEECCCEEEEEEEEEEECSSCCEE
T ss_pred eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------CCEEEEeccCCCeeEEEEEEECCCCCEE
Confidence 456666 6778999999999865558999999999999987654 4499999999449999999998888988
Q ss_pred EEeeeeeE--EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCccee
Q 013701 83 CYPVVETI--HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 83 ~~~~~e~~--~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~ 160 (438)
.+++.+++ ...+.....+.|.+++++..+++++++.+++++||++|++++||+++++|++||+|+|||+|++++++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~ 271 (380)
T 3ax6_A 192 CYPVVEMYFDEDANICDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIE 271 (380)
T ss_dssp EEEEEEEC--------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHH
T ss_pred EECCeeeeecccCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehh
Confidence 88888776 5556655667898899999999999999999999999999999999988899999999999999999888
Q ss_pred eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccc--cCCC-ccchhhhHHHHHcCCCcEEEecccccccCCceeE
Q 013701 161 SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAE--GERG-FYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 161 ~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~--~~~~-~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG 237 (438)
+++.|+|++++++++|.+++..... .+++|+++++... +... .+ +++.+ ..|+++++++++...++++++|
T Consensus 272 ~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~----~~~~~-~~p~~~~~~~g~~~~~~~~~lg 345 (380)
T 3ax6_A 272 ACVTSQFEQHIRAIMNLPLGSTELL-IPAVMVNLLGEEGYYGKPALIG----LEEAL-AIEGLSLHFYGKKETRPYRKMG 345 (380)
T ss_dssp HBSSCHHHHHHHHHTTCCCCCCCBC-SCEEEEEEEBCTTCCBSEEEES----HHHHH-TSTTEEEEECCCSCBCBTCEEE
T ss_pred hccccHHHHHHHHHhCCCCCCcccc-CceEEEEEecccccccccccch----hHHHh-cCCCCEEEecCCCCCCCCCeeE
Confidence 8999999999999999999876543 3467788887543 2111 23 66676 7899999999986667889999
Q ss_pred EEEEecCCHHHHHHHHHHHhhhcc
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
||++.|+|.++|+++++++.+++.
T Consensus 346 ~v~~~g~~~~~a~~~~~~~~~~i~ 369 (380)
T 3ax6_A 346 HFTVVDRDVERALEKALRAKKILK 369 (380)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTCE
T ss_pred EEEEEeCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999998775
No 22
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=4e-33 Score=282.11 Aligned_cols=250 Identities=25% Similarity=0.329 Sum_probs=205.9
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCceeEEEEEEEecC
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
+++.+|+.++++++|||+||||..+ ++|+|+++++|++|+.++++.+.. ..+.+++||||+++.|+++.++++.+
T Consensus 134 ~~~~~~~~~~~~~~g~P~vvKp~~g-~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 134 ADSESLFREAVADIGYPCIVKPVMS-SSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEESCC----CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCC-CCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 5788999999999999999999764 589999999999999999987642 13459999999955999999998876
Q ss_pred CeEEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013701 79 KSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
| +..++..++....++....+.|++++++..+++++++.+++++||++|++++||+++++ ++||+|+|||++++++++
T Consensus 213 g-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~ 290 (391)
T 1kjq_A 213 G-VHFCAPVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVT 290 (391)
T ss_dssp E-EEECCCEEEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGH
T ss_pred C-eEEccCcceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCccee
Confidence 5 55666666665567766778899999999999999999999999999999999999976 799999999999999988
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccC-CCccchhhhHHHHHcCCCcEEEecccccccCCceeE
Q 013701 159 IESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMG 237 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG 237 (438)
..++++|+++.++++++|.+++.+.. ..+++++++++..... ..+. +++++.. |++.++++++...+.++++|
T Consensus 291 ~~~~g~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-pg~~v~~~~~~~~~~~~~lg 364 (391)
T 1kjq_A 291 LISQDLSEFALHVRAFLGLPVGGIRQ-YGPAASAVILPQLTSQNVTFD----NVQNAVG-ADLQIRLFGKPEIDGSRRLG 364 (391)
T ss_dssp HHHBSSCHHHHHHHHHTTCCCCCCCB-CSSEEEEEECCEEEESSCEEE----CGGGSCB-TTEEEEECCCCCEEEECCCE
T ss_pred eeecCcCHHHHHHHHHcCCCCCCccc-cCcEEEEEEEccCcccccccc----cHHHHhC-CCCEEEEeccCCCCCCCeEE
Confidence 87789999999999999999876543 3446777877654221 1122 4445556 99888888886677789999
Q ss_pred EEEEecCCHHHHHHHHHHHhhhcc
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
+|++.|+|.++|+++++++.+.++
T Consensus 365 ~v~~~g~~~~~a~~~~~~~~~~i~ 388 (391)
T 1kjq_A 365 VALATAESVVDAIERAKHAAGQVK 388 (391)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCE
T ss_pred EEEEecCCHHHHHHHHHHHHhhhe
Confidence 999999999999999999998774
No 23
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=6.7e-33 Score=284.55 Aligned_cols=254 Identities=26% Similarity=0.353 Sum_probs=203.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC----CCCcEEEeeccCCceeEEEEEEEec-
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG----FDRGLYVEKWAPFVKELAVIVVRGR- 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~----~~~~~lvEe~I~g~~E~sv~~~~~~- 77 (438)
+++.+|+.++++++|||+||||.. +++|+|+++++|++|+.++++.+.. ..+.+++||||+++.|+++.++++.
T Consensus 142 ~~~~~~~~~~~~~~g~P~vvKp~~-g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 220 (433)
T 2dwc_A 142 ATTLDELYEACEKIGYPCHTKAIM-SSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFD 220 (433)
T ss_dssp ESSHHHHHHHHHHHCSSEEEEECC-C------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEEC
T ss_pred eCCHHHHHHHHHhcCCCEEEEECC-CcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEeccc
Confidence 578899999999999999999975 4589999999999999999987643 2356999999995599999999876
Q ss_pred -CCe--EEEEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013701 78 -DKS--ILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 78 -~G~--~~~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
+|+ +..++..++....++...++.|++++++..+++++++.+++++||++|++++||+++++ ++||+|+|||++++
T Consensus 221 ~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 221 ENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp TTSCEEEEEECCEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred CCCCEeEEEecccceEEEcCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 787 45566666655567777778899999999999999999999999999999999999976 79999999999999
Q ss_pred CCcceeec--cCcHHHHHHHHHhCCCCCC-------CCCCCCceEEEEeccccccC-CCccchhhhHHHHHcCCCcEEEe
Q 013701 155 GHHTIESC--YTSQFEQHMRAVVGLPLGD-------PSMKTPAAIMYNLLGEAEGE-RGFYLAHQLIGKALSIPGATVHW 224 (438)
Q Consensus 155 ~~~~~~~~--~~~~~~~~l~~~~G~~l~~-------~~~~~~~~~~~~il~~~~~~-~~~~~~~~~i~~~~~~pg~~~~~ 224 (438)
+++++..+ ++|+++.+++.++|.+++. ......+++++++++...+. ..+. +++++...|++.+++
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~~~~~i~----g~~~~~~~pg~~v~~ 375 (433)
T 2dwc_A 300 GMVTLASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFR----GLVKALSVPNATVRL 375 (433)
T ss_dssp GGGHHHHSCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCEESCEEE----CHHHHTTSTTEEEEE
T ss_pred cceehhHhccCCCHHHHHHHHHcCCCCCcccccccccccccccEEEEEEEcCCCCcCcCcc----hHHHHhhCCCcEEEE
Confidence 88876644 9999999999999999874 11122346777877754221 1222 667777889998889
Q ss_pred cccccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 225 YDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 225 ~~~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+++..++.++++|+|++.|+|.++|+++++++.+.+..
T Consensus 376 ~~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~ 413 (433)
T 2dwc_A 376 FGKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMIEL 413 (433)
T ss_dssp CCCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTCEE
T ss_pred ecCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhheEE
Confidence 88877788899999999999999999999999998753
No 24
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=2.8e-33 Score=280.96 Aligned_cols=242 Identities=32% Similarity=0.562 Sum_probs=168.4
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEe
Q 013701 6 LESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 6 ~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~ 85 (438)
.+|+.++++++|||+|+||..++++|+|+++++|.+|+.++++.+.. ...+++||||++++|+++.+++|.+|++..++
T Consensus 115 ~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~-~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~ 193 (365)
T 2z04_A 115 RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK-EESFIIEEFVKFEAEISCIGVRDREGKTYFYP 193 (365)
T ss_dssp -------------CEEEECC-------------------------------CEEEECCCCSEEEEEEEEECTTCCEEECC
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc-CCCEEEEccCCCCEEEEEEEEECCCCCEEEEC
Confidence 67888888999999999997654489999999999999998877642 34599999999449999999998889998888
Q ss_pred eeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeeccCc
Q 013701 86 VVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTS 165 (438)
Q Consensus 86 ~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~~~ 165 (438)
..+.+...+.....+.|.++ .+++++++.+++++||++|++++||+++++|++|++|+|||++++++++..+++.|
T Consensus 194 ~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~~~ 269 (365)
T 2z04_A 194 QPFNKHEEGILIYNYVPYAK----LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTS 269 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEC----CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSC
T ss_pred CEEEEEeCCEeEEEECCHhH----HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccccC
Confidence 88877766666666777766 55788999999999999999999999998888999999999999999988888999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEEecCC
Q 013701 166 QFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSS 245 (438)
Q Consensus 166 ~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~~G~~ 245 (438)
+|++++++++|.+++..... .+++++++++..... . .++.+...|++++++||+ ..++++++|||++.|+|
T Consensus 270 ~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~g~-~~~~~~~lg~v~~~g~~ 340 (365)
T 2z04_A 270 QFENLLRAITEMPLGSTELK-LPSGMVNILGKSYEE---I----PLKEILSVEGAKLYWYGK-EKKPRRKVGHVNVVGRS 340 (365)
T ss_dssp HHHHHHHHHTTCCCCCCCBS-SCEEEEEEESCCGGG---S----CHHHHTTSTTEEEEECCC-CCCTTCEEEEEEEECSS
T ss_pred HHHHHHHHHhCCCCCCcccc-CCEEEEEEECCcccc---c----hHHHHhcCCCCEEEecCC-CCCCCCeEEEEEEecCC
Confidence 99999999999999876543 447788888754211 1 455566678988889987 77788999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 013701 246 MGLVESRLNSLLKEDS 261 (438)
Q Consensus 246 ~~ea~~ka~~~~~~i~ 261 (438)
.++|+++++++.++++
T Consensus 341 ~~~a~~~~~~~~~~i~ 356 (365)
T 2z04_A 341 KEEVVEKVERVFTLLK 356 (365)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998775
No 25
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.97 E-value=4.8e-29 Score=256.87 Aligned_cols=276 Identities=17% Similarity=0.191 Sum_probs=206.1
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.++|.+|+.++++++|||+||||..++ +|+||++++|++|+.++++.+... .+.+++||||+|.+|+++.+++
T Consensus 141 ~~~~~~e~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 219 (446)
T 3ouz_A 141 ALAGAEAAKKLAKEIGYPVILKAAAGG-GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIG 219 (446)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 468999999999999999999998655 899999999999999999875421 3459999999988999999999
Q ss_pred ecCCeEEEEeee-eeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 76 GRDKSILCYPVV-ETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~-e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|++..++.. +.....+.......|+ .++++..+++.+.+.++++++|++|++++||+++++|++||+|+|||+++
T Consensus 220 d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~~g 299 (446)
T 3ouz_A 220 DSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQV 299 (446)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCT
T ss_pred cCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCCCC
Confidence 988887665433 2344445545556788 49999999999999999999999999999999998888999999999998
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCC--CCCCceEEEEeccccccCCCccchhhhHHHHHcC---CCcEEEe--cc
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSI---PGATVHW--YD 226 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~--~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~---pg~~~~~--~~ 226 (438)
+.+++...+|+|+++.+++.++|.+++... ...+.++.++++.... ..+.+....+.. ... |++.+.. +.
T Consensus 300 ~~~~~~~~~G~dl~~~~~~~~~G~~l~~~~~~~~~g~ai~~ri~ae~~--~~~~p~~G~i~~-~~~p~~~~vr~~~~~~~ 376 (446)
T 3ouz_A 300 EHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSIECRITAEDS--KTFLPSPGKITK-YIPPAGRNVRMESHCYQ 376 (446)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCGGGCCCCSEEEEEEEESBCT--TTCCBCCEECSE-EECCCSTTEEEEECCCT
T ss_pred cceeeeeeeCCCHHHHHHHHHCCCCCCcCCCCCcceEEEEEEeeccCC--CccCCCCcEEeE-EecCCCCCEEEEccccc
Confidence 766777788999999999999999987211 1123455566665432 111110001111 112 3333322 11
Q ss_pred cccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH
Q 013701 227 KPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM 295 (438)
Q Consensus 227 ~~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~ 295 (438)
.... ....++|+|++.|+|.++|++++.++++.+ .+.|-.++.+.+..+...-..
T Consensus 377 G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~--------------~i~g~~~~~~~~~~~~~~~~~ 433 (446)
T 3ouz_A 377 DYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDEL--------------LISGIKTTKDFHLSMMENPDF 433 (446)
T ss_dssp TCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHC--------------EEESSCCTHHHHHHHHTCHHH
T ss_pred CCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhC--------------EEeCccCCHHHHHHHhCChhh
Confidence 1111 112469999999999999999999999876 345667888888887755443
No 26
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.97 E-value=1.2e-28 Score=254.05 Aligned_cols=275 Identities=18% Similarity=0.217 Sum_probs=201.7
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++|||+||||..++ +|+||++++|++|+.++++.+.. ....++|||||+|.+|+++.+++
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 2vpq_A 136 LMKDVSEAKKIAKKIGYPVIIKATAGG-GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVG 214 (451)
T ss_dssp CBSCHHHHHHHHHHHCSSEEEEETTCC-TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEE
Confidence 467899999999999999999997655 89999999999999999876531 12459999999987899999999
Q ss_pred ecCCeEEEEeee-eeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEe-CCCcEEEEEEcCCCC
Q 013701 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPH 152 (438)
Q Consensus 76 ~~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~ 152 (438)
+.+|++..++.. ....+.........|++ ++++..+++++++.++++++|++|++++||+++ ++|++||+|+|||++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~ 294 (451)
T 2vpq_A 215 DSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQ 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCC
Confidence 888887655421 11233333334456887 999999999999999999999999999999999 788999999999999
Q ss_pred CCCCcceeeccCcHHHHHHHHHhCCCCCCCC--CC-CCceEEEEeccccccCCCccchhhhHHHHH--cCCCcEE--Eec
Q 013701 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MK-TPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATV--HWY 225 (438)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~--~~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~~--~~~ 225 (438)
++.+++...+|+|+++.+++.++|.+++... .. ...++++++++..... .+.+....+..+. ..|++.+ +++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~p~~g~i~~~~~~~~~~v~~~~~~~ 373 (451)
T 2vpq_A 295 VEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYK-NFMPSPGKIEQYLAPGGYGVRIESACY 373 (451)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCCSCCGGGCCCCSEEEEEEEESEEGGG-TTEECCSBCSEEECCCSTTEEEECCCC
T ss_pred CceehhhHHhCCCHHHHHHHHHCCCCCCCcccccCcCceEeeeEeeeecccc-ccCCCCCEEeEEECCCCCCcccccccc
Confidence 8776666778999999999999999886421 11 2346666766543210 0110000011110 1234333 234
Q ss_pred ccccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHH
Q 013701 226 DKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 226 ~~~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~ 292 (438)
.+... ..++++|+|++.|+|.++|+++++++++.+. +-|-..+.+....+...
T Consensus 374 ~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~--------------~~g~~~~~~~~~~~~~~ 428 (451)
T 2vpq_A 374 TNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFV--------------VLGIDTTIPFHIKLLNN 428 (451)
T ss_dssp TTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCSHHHHHHHHTC
T ss_pred cCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccE--------------EeCcCCCHHHHHHHhCC
Confidence 33222 3357899999999999999999999998764 23445667777666543
No 27
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.97 E-value=1.5e-28 Score=253.37 Aligned_cols=277 Identities=17% Similarity=0.181 Sum_probs=203.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++|||+||||..++ +|+||++++|++|+.++++.+.. ....++|||||+|.+|+++.+++
T Consensus 136 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 1ulz_A 136 VLKSLEEAKALAREIGYPVLLKATAGG-GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLG 214 (451)
T ss_dssp SCCCHHHHHHHHHHHCSSEEEEECSSS-SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEE
Confidence 467899999999999999999997655 89999999999999998876531 13469999999987899999999
Q ss_pred ecCCeEEEEeee-eeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 76 GRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.+|++..++.. ......+.......|.. ++++..+++.+.+.++++++|++|++++||+++++|++||+|+|||+++
T Consensus 215 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~ 294 (451)
T 1ulz_A 215 DKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 294 (451)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCT
T ss_pred cCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCc
Confidence 878887654421 12333444444456876 9999999999999999999999999999999998889999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCC--CC-CCceEEEEeccccccCCCccchhhhHHHH--HcCCCcE--EEecc
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MK-TPAAIMYNLLGEAEGERGFYLAHQLIGKA--LSIPGAT--VHWYD 226 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~--~~-~~~~~~~~il~~~~~~~~~~~~~~~i~~~--~~~pg~~--~~~~~ 226 (438)
+.+++...+|+|+++.+++.++|.+++... .. ...+++.++++..... .+.+....+..+ ...|++. .+++.
T Consensus 295 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~p~~g~i~~~~~~~~~~v~~~~~~~~ 373 (451)
T 1ulz_A 295 EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKK-NFAPSTRVIERYYVPGGFGIRVEHAAAR 373 (451)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCCGGGCCCCSEEEEEEEESEEGGG-TTEECCSBCCSEECCCSTTEEEEECCCT
T ss_pred cchHHHHHhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEeccccCccc-CcCCCCceeceEECCCCCCcccccCccC
Confidence 766666778999999999999999887321 11 2345666766543210 011000001111 0124553 33444
Q ss_pred ccccc--CCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHH
Q 013701 227 KPEMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILT 294 (438)
Q Consensus 227 ~~~~~--~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~ 294 (438)
+.... .++++|+|++.|+|.++|+++++++++.+.. -|-.+|......+...-.
T Consensus 374 g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~~~~~ 429 (451)
T 1ulz_A 374 GFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEI--------------TGVKTTIPLLINIMKEKD 429 (451)
T ss_dssp TCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE--------------CSSCCSHHHHHHHHHCHH
T ss_pred CCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEE--------------eCccCCHHHHHHHhCCHH
Confidence 43333 2578999999999999999999999998753 123578887777665433
No 28
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.97 E-value=2.9e-29 Score=264.50 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=205.0
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCCe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+.|.+|+.++++++|||+||||+.++ ||+||++|+|++|+.++++.+.. ..+.++||+||+|.+|++|.++.|.+|+
T Consensus 230 v~s~eea~~~a~~iGyPvVVKp~~Gg-GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~ 308 (587)
T 3jrx_A 230 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 308 (587)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSC
T ss_pred cCCHHHHHHHHHhcCCeEEEEeCCCC-CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998765 89999999999999999987642 2356999999998899999999998888
Q ss_pred EEEE-eeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013701 81 ILCY-PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 81 ~~~~-~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
++.+ +..+.++..+.......|++ +++++.+++.+.+.++++++||+|++++||+++++|++||+|+|||++++.+++
T Consensus 309 vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~yflEINpRl~~e~~vt 388 (587)
T 3jrx_A 309 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 388 (587)
T ss_dssp EEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEEEEEESSCCTTHHHH
T ss_pred EEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCCCCCcccee
Confidence 7654 33344555555445567888 799999999999999999999999999999999889999999999999877777
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCC-------------------------CCCCCceEEEEeccccccCCCccchhhhHHH
Q 013701 159 IESCYTSQFEQHMRAVVGLPLGDP-------------------------SMKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l~~~-------------------------~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~ 213 (438)
...+|+|+++++++.++|.|++.. ....+.++.++++.+... ..|.|....+..
T Consensus 389 e~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~aedp~-~~f~p~~G~i~~ 467 (587)
T 3jrx_A 389 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPD-EGFKPSSGTVQE 467 (587)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC-----------CCCCEE
T ss_pred ccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEEeecccCcc-ccCCCCCcEEEE
Confidence 778999999999999999998621 112345677777765421 122211111111
Q ss_pred HHcCCCc-EEE-ecccc---ccc--CCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEe-cCCCHHH
Q 013701 214 ALSIPGA-TVH-WYDKP---EMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG-SDSDLPV 285 (438)
Q Consensus 214 ~~~~pg~-~~~-~~~~~---~~~--~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~g-s~sD~~~ 285 (438)
+ ..|+. .+. .++.. ... -...+|++++.|+|+++|++++.++++++. +.| -.++.+.
T Consensus 468 ~-~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~--------------i~g~~~tn~~~ 532 (587)
T 3jrx_A 468 L-NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS--------------IRGDFRTTVEY 532 (587)
T ss_dssp E-ECSSCTTEEEEECCC----------CCEEEEEEEESSHHHHHHHHHHHHHHHH--------------HSSTTSSTTHH
T ss_pred E-EeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccE--------------EeCCCCCcHHH
Confidence 1 11211 111 11110 011 124579999999999999999999999753 233 2567888
Q ss_pred HHHHHHHHHHcCCcE
Q 013701 286 MKDAAKILTMFSVPH 300 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~ 300 (438)
+..+...-....-.+
T Consensus 533 ~~~~~~~~~f~~g~~ 547 (587)
T 3jrx_A 533 LINLLETESFQNNDI 547 (587)
T ss_dssp HHHHHTSHHHHTTCS
T ss_pred HHHHhCChhhccCCc
Confidence 888776554443343
No 29
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.96 E-value=5.1e-29 Score=254.19 Aligned_cols=251 Identities=13% Similarity=0.079 Sum_probs=181.1
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++|||+||||+.++ +|+||++++|++|+.++++.+.. ..+.++|||||+| +|+++++++
T Consensus 126 ~~~~~~e~~~~~~~~g~PvvvKp~~~~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~ 203 (412)
T 1vkz_A 126 VAETPEELREKIKKFSPPYVIKADGLA-RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVV 203 (412)
T ss_dssp EESSHHHHHHHHTTSCSSEEEEESSCC-SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEE
Confidence 367899999999999999999998755 89999999999999999987641 1136999999996 999999998
Q ss_pred ecCCeEEEEeeeeeEEec--Ce------eeEEEcCCCCCHHHHHHHHHHHHHHHHHc-----CceeEEEEEEEEeCCCcE
Q 013701 76 GRDKSILCYPVVETIHKE--NI------CHIVKAPAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQI 142 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~~--g~------~~~~~~P~~l~~~~~~~i~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~ 142 (438)
|++ .+..+...++..+. ++ ....+.|+++++++.+++++++.+++++| +++|++++||+++++| +
T Consensus 204 dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~ 281 (412)
T 1vkz_A 204 NGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-P 281 (412)
T ss_dssp ETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-E
T ss_pred CCC-EEEEeeeeEeeeeccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-c
Confidence 543 33334333332221 11 12356788899999999999999999999 8899999999999888 9
Q ss_pred EEEEEcCCCCCCCCcceee-ccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcE
Q 013701 143 LLNEVAPRPHNSGHHTIES-CYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGAT 221 (438)
Q Consensus 143 ~viEiNpR~~~~~~~~~~~-~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~ 221 (438)
||+|+|||+|+++++++.. +++++.+.+++ +++.++++..... ..+++++++.......+.+ +..-....|+ .
T Consensus 282 ~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~-~~~g~l~~~~~~~-~~a~~~~l~~~~~~~~~~~---g~~i~l~~~~-~ 355 (412)
T 1vkz_A 282 YILEYNVRLGDPETEVIVTLNPEGFVNAVLE-GYRGGKMEPVEPR-GFAVDVVLAARGYPDAPEK---GKEITLPEEG-L 355 (412)
T ss_dssp EEEEEESSCCTTHHHHHHHHCHHHHHHHHHH-HHHTSCCCCCCCC-SEEEEEEEECTTTTTSCCC---CCBCBCCSSC-C
T ss_pred EEEEEecCCCCCcceeehhhcCCCHHHHHHH-HhcCCCccccccC-CeEEEEEEecCCCCCCCCC---CCEeeeCCCC-c
Confidence 9999999999888765543 46665555544 4545565443221 2556676654311111110 1100012266 5
Q ss_pred EEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 222 VHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 222 ~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
++++|.. ....++++|+|++.|+|.++|+++++++++++..
T Consensus 356 v~~~g~~~~~~~~~~~~~~vg~v~~~g~~~~ea~~~~~~~~~~i~~ 401 (412)
T 1vkz_A 356 IFFAGVAEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHF 401 (412)
T ss_dssp EEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred EEECcccccCCeEEeCCCcEEEEEEeCCCHHHHHHHHHHHhcceee
Confidence 6666653 3456799999999999999999999999998864
No 30
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.96 E-value=4e-29 Score=262.28 Aligned_cols=276 Identities=18% Similarity=0.254 Sum_probs=192.5
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCCe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
+.|.+|+.++++++|||+||||+.++ ||+||++|+|++|+.++++.+.. ..+.++||+||+|.+|+++.+++|.+|+
T Consensus 214 v~s~~ea~~~a~~igyPvVVKp~~gg-GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~ 292 (540)
T 3glk_A 214 VKDVDEGLEAAERIGFPLMIKASEGG-GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGN 292 (540)
T ss_dssp CCSHHHHHHHHHHHCSSEEEEETTCC-----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTSC
T ss_pred cCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 67899999999999999999998765 89999999999999999987642 2356999999998899999999998888
Q ss_pred EEEEe-eeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013701 81 ILCYP-VVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 81 ~~~~~-~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
++.+. ..+.++..+.......|++ +++++.+++.+.+.++++++||+|++++||+++++|++||+|+|||++++.+++
T Consensus 293 vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR~~~~~~vt 372 (540)
T 3glk_A 293 AVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCT 372 (540)
T ss_dssp EEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEECSCCTTHHHH
T ss_pred EEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEEEECCCCCcchhh
Confidence 76543 3333444333334456887 799999999999999999999999999999999889999999999999877777
Q ss_pred eeeccCcHHHHHHHHHhCCCCCCC-------------------------CCCCCceEEEEeccccccCCCccchhhhHHH
Q 013701 159 IESCYTSQFEQHMRAVVGLPLGDP-------------------------SMKTPAAIMYNLLGEAEGERGFYLAHQLIGK 213 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l~~~-------------------------~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~ 213 (438)
...+|+|+++++++.++|.|++.. ....+.++.++++.+... ..+.|....+..
T Consensus 373 e~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~aedp~-~~f~p~~G~i~~ 451 (540)
T 3glk_A 373 EMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPD-EGFKPSSGTVQE 451 (540)
T ss_dssp HHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEEEC-------------CCEEE
T ss_pred HhHhCCCHHHHHHHHHCCCCcccccccccccccccccccccccccccccCCCceeEEEEEEeccCCc-ccccCCceEEEE
Confidence 778999999999999999998721 112345667777765421 112211111111
Q ss_pred HHcCCCc-EEEe-cccc---ccc--CCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEe-cCCCHHH
Q 013701 214 ALSIPGA-TVHW-YDKP---EMR--QQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG-SDSDLPV 285 (438)
Q Consensus 214 ~~~~pg~-~~~~-~~~~---~~~--~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~g-s~sD~~~ 285 (438)
+ ..|+. .+.. ++.. ... -...+|+|++.|+|+++|++++.++++++. +.| -.++.+.
T Consensus 452 ~-~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~--------------i~g~~~tn~~~ 516 (540)
T 3glk_A 452 L-NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS--------------IRGDFRTTVEY 516 (540)
T ss_dssp C-CCSSCCSEEEEEEC------------CEEEEEEEESSHHHHHHHHHHHHHHHT--------------CC----HHHHH
T ss_pred E-EcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCCHHHHHHHHHHHHhccE--------------EecccCCcHHH
Confidence 1 11221 1111 1100 011 124579999999999999999999999763 223 2456777
Q ss_pred HHHHHHHHHH
Q 013701 286 MKDAAKILTM 295 (438)
Q Consensus 286 ~~~~~~~L~~ 295 (438)
+..+...-..
T Consensus 517 ~~~~~~~~~f 526 (540)
T 3glk_A 517 LINLLETESF 526 (540)
T ss_dssp HHHHHHSHHH
T ss_pred HHHHhCChhh
Confidence 7777655443
No 31
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.96 E-value=3.7e-28 Score=250.35 Aligned_cols=272 Identities=17% Similarity=0.229 Sum_probs=201.1
Q ss_pred cccCHHHH-HHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEE
Q 013701 2 EVNDLESA-WRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~-~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~ 74 (438)
.+++.+|+ .++++++|||+||||..++ +|+|+++++|++|+.++++.+.. ....++|||||+|.+|+++.++
T Consensus 137 ~~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~ 215 (449)
T 2w70_A 137 PLGDDMDKNRAIAKRIGYPVIIKASGGG-GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVL 215 (449)
T ss_dssp CCCSCHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHhCCcEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEE
Confidence 35788999 9999999999999997655 89999999999999998876531 1245999999998789999999
Q ss_pred EecCCeEEEEeee-eeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013701 75 RGRDKSILCYPVV-ETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 75 ~~~~G~~~~~~~~-e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
++.+|++..++.. ....+.+.......|.. +++++.+++.+.+.++++++|++|++++||++++ |++||+|+|||++
T Consensus 216 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~~ 294 (449)
T 2w70_A 216 ADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQ 294 (449)
T ss_dssp ECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSCC
T ss_pred EcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCCC
Confidence 9878887655432 22334444445567876 9999999999999999999999999999999987 7899999999999
Q ss_pred CCCCcceeeccCcHHHHHHHHHhCCCCCCCC--CC-CCceEEEEeccccccCCCccchhhh-HHHH--HcCCCcEE--Ee
Q 013701 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPS--MK-TPAAIMYNLLGEAEGERGFYLAHQL-IGKA--LSIPGATV--HW 224 (438)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~--~~-~~~~~~~~il~~~~~~~~~~~~~~~-i~~~--~~~pg~~~--~~ 224 (438)
++.+++...+|+|+++.+++.++|.+++... .. ...+++.++++... . .+.+. .+ ++.+ ...|++.+ ++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~g~i~~~~~~~~~~v~~~~~~ 371 (449)
T 2w70_A 295 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-N-TFLPS-PGKITRFHAPGGFGVRWESHI 371 (449)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHHTCCCSSCGGGCCCCSEEEEEEEECBCT-T-TCCBC-CEECCEEECCCSTTEEEECCC
T ss_pred ccchHHHHHhCCCHHHHHHHHHCCCCCCCchhccccceeEEEEeecccCc-c-ccCCC-CCEeceEECCCCCcEEEEecc
Confidence 8766666778999999999999999886321 11 23355667765432 1 11100 01 1111 01244332 23
Q ss_pred cccccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHH
Q 013701 225 YDKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 225 ~~~~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~ 292 (438)
+.+... ..++++|+|++.|+|.++|+++++++.+.++. .|-.+|......+...
T Consensus 372 ~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~~~ 427 (449)
T 2w70_A 372 YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII--------------DGIKTNVDLQIRIMND 427 (449)
T ss_dssp CTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEE--------------ESSCCSHHHHHHHHTC
T ss_pred ccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEE--------------eCcCCCHHHHHHHHcC
Confidence 333222 34578999999999999999999999998752 2246788877776654
No 32
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.96 E-value=2.4e-28 Score=250.00 Aligned_cols=250 Identities=16% Similarity=0.104 Sum_probs=183.6
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc-----------CCCCcEEEeeccCCceeEEE
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG-----------GFDRGLYVEKWAPFVKELAV 71 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~-----------~~~~~~lvEe~I~g~~E~sv 71 (438)
+++.+|+.+ .++|||+||||..+ ++|+||++|+|++|+.++++.+. .....+++|+||+| .|+++
T Consensus 133 ~~~~~~~~~--~~~g~P~vvKp~~g-~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv 208 (425)
T 3vot_A 133 FHTLADLEN--RKLSYPLVVKPVNG-FSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAI 208 (425)
T ss_dssp ESSGGGGTT--CCCCSSEEEEESCC------CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEE
T ss_pred cCcHHHHHH--hhcCCcEEEEECCC-CCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEE
Confidence 456666643 57899999999764 49999999999999999988753 12356999999998 89999
Q ss_pred EEEEecCCeEEEEeeeeeEEecC---eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeCCCcEEEEEE
Q 013701 72 IVVRGRDKSILCYPVVETIHKEN---ICHIVKAPAAVPWKISELATDVAHKAVSSLEGA-GIFAVELFWTNNGQILLNEV 147 (438)
Q Consensus 72 ~~~~~~~G~~~~~~~~e~~~~~g---~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~~g~~~viEi 147 (438)
+++.+ +|++..+++.+.....+ .....+.|++++++..+++.+.+.+++++||+. |++|+||+++++|++||+|+
T Consensus 209 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEi 287 (425)
T 3vot_A 209 ETLSI-QGNVHVLSIGYKGNSKGPFFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEV 287 (425)
T ss_dssp EEEEE-TTEEEEEEEEEEECCCCSBCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEE
T ss_pred EEEEe-CCcEEEEeEEEEeccCCCccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEE
Confidence 99864 67888887766543322 123456799999999999999999999999986 99999999999999999999
Q ss_pred cCCCCCCCCc---ceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEecc-ccccC-CCccchhhhHHHHHcCCC
Q 013701 148 APRPHNSGHH---TIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLG-EAEGE-RGFYLAHQLIGKALSIPG 219 (438)
Q Consensus 148 NpR~~~~~~~---~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~-~~~~~-~~~~~~~~~i~~~~~~pg 219 (438)
|||+|+++.. +..++|+|+++.+++.++|.+...... .....+...++. ...+. ..++ +++++...|+
T Consensus 288 N~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~----g~~~~~~~p~ 363 (425)
T 3vot_A 288 GARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIPVQGSGTFEKID----GLEEVKQRQE 363 (425)
T ss_dssp ESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGGSCSCCCCSSEEEEEECCCCSCEEEEEEE----THHHHHTCTT
T ss_pred ecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccccccccccceEEEEEEEcCCCCeEEEecC----CHHHHhcCCC
Confidence 9999876643 234679999999999999965433211 111222223332 22111 2344 7788888898
Q ss_pred c-EEEecccc------cccCCceeEEEEEecCCHHHHHHHHHHHhhhcc
Q 013701 220 A-TVHWYDKP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 220 ~-~~~~~~~~------~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
+ +++++.++ ..+.++++|+|++.|+|.++|+++++++.+.++
T Consensus 364 v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~ 412 (425)
T 3vot_A 364 VKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELH 412 (425)
T ss_dssp EEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred eEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccE
Confidence 6 45554322 123457899999999999999999999998875
No 33
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.96 E-value=5e-27 Score=241.54 Aligned_cols=255 Identities=13% Similarity=0.124 Sum_probs=186.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..+ ++|+||++++|++|+.++++.+... ...++|||||+| +|+++.+++
T Consensus 143 ~~~~~~ea~~~~~~~g~PvVvKp~~~-~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 220 (442)
T 3lp8_A 143 YFVDTNSAYKFIDKHKLPLVVKADGL-AQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLV 220 (442)
T ss_dssp EESSHHHHHHHHHHSCSSEEEEESSC-CTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEeECCC-CCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEE
Confidence 36789999999999999999999754 5899999999999999999886521 246999999997 999999998
Q ss_pred ecCCeEEEEeeeeeEEe--cCe------eeEEEcCCC-CCHHHHHHHHHH----HHHHHHHcCc--eeEEEEEEEEeCCC
Q 013701 76 GRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLEG--AGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~~----a~~i~~~lg~--~G~~~ve~~~~~~g 140 (438)
|++ .++.++..+.... +++ .+..+.|.+ +++++.+++.+. +.++++++|+ +|++++||+++++|
T Consensus 221 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g 299 (442)
T 3lp8_A 221 DGS-NPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE 299 (442)
T ss_dssp ESS-CEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred CCC-eEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 654 5555555443221 111 134567887 899999999987 8888888876 89999999999877
Q ss_pred cEEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCC-CceEEEEecc-ccccCCCccc--hhhhHHHHH
Q 013701 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLG-EAEGERGFYL--AHQLIGKAL 215 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~-~~~~~~~il~-~~~~~~~~~~--~~~~i~~~~ 215 (438)
+||+|+|||+|+++++.+. .++.|+++.+++.+.|... .....+ ..++...++. ..++. .+.+ .+.+++++.
T Consensus 300 -~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~-~~~~~~~~~~a~~vv~a~~gyp~-~~~~g~~i~g~~~~~ 376 (442)
T 3lp8_A 300 -PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLG-NESVELSKKAALCVVVASRGYPG-EYKKNSIINGIENIE 376 (442)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCS-SCCCCBCSCEEEEEEEEETTTTS-SCCSSCEEBSHHHHH
T ss_pred -eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCC-CCCceeccCcEEEEEEccCCCCC-CCCCCCEeeCCcccc
Confidence 9999999999988876654 4578999999999999632 222221 1222333332 22221 1111 123677766
Q ss_pred cCCCcEEEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 216 SIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 216 ~~pg~~~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
..|++.+...|.. ....|.|+++|++.|+|.++|+++++++++.|++
T Consensus 377 ~~~~~~~~~ag~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 428 (442)
T 3lp8_A 377 KLPNVQLLHAGTRREGNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDW 428 (442)
T ss_dssp TCSSEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred cCCCcEEEEeeeeccCCeEEecCCeEEEEEEecCCHHHHHHHHHHHhcccCC
Confidence 6678754332311 2235688899999999999999999999998875
No 34
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-27 Score=241.10 Aligned_cols=253 Identities=15% Similarity=0.108 Sum_probs=180.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||..++ +|+||++++|++|+.++++.+.. ....++|||||+| .|+++.+++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~G~- 197 (417)
T 2ip4_A 121 VFREPLEALAYLEEVGVPVVVKDSGLA-AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTDGE- 197 (417)
T ss_dssp EESSHHHHHHHHHHHCSSEEEECTTSC-SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEESSS-
T ss_pred eeCCHHHHHHHHHHcCCCEEEEECCCC-CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEeCC-
Confidence 357899999999999999999997655 89999999999999999988752 2256999999997 899999997432
Q ss_pred eEEEEeeeeeEEe--cCe------eeEEEcCCCCCHHHHHHH-HHHHHHHHHHc-----CceeEEEEEEEEeCCCcEEEE
Q 013701 80 SILCYPVVETIHK--ENI------CHIVKAPAAVPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNGQILLN 145 (438)
Q Consensus 80 ~~~~~~~~e~~~~--~g~------~~~~~~P~~l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~~vi 145 (438)
.+..++..++... +++ ....+.|.++++++.+++ ++++.+++++| +++|++++||+++++| +||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~vi 276 (417)
T 2ip4_A 198 TILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVL 276 (417)
T ss_dssp CEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEE
T ss_pred EEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEE
Confidence 3455554432211 111 123567888999999888 77788888875 7889999999999888 9999
Q ss_pred EEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCC-CceEEEEeccccccCCCccch--hhhHHHHHcCCCcE
Q 013701 146 EVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLA--HQLIGKALSIPGAT 221 (438)
Q Consensus 146 EiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~-~~~~~~~il~~~~~~~~~~~~--~~~i~~~~~~pg~~ 221 (438)
|+|||+|+++++++. .+++|+.+.+++.+.|. ++...... ...++.++++.........++ ..+++ ..|++.
T Consensus 277 EiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~~---~~~~v~ 352 (417)
T 2ip4_A 277 EFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAGTRLSWKEGAAACVVLAAPGYPESPRKGIPLHVPE---PPEGVL 352 (417)
T ss_dssp EEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGGCCCCBCSSEEEEEEEECTTTTTSCCCCCBCBCCC---CCTTEE
T ss_pred EEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcCCccccCCcEEEEEEeCCCCCCCCCCCCcccccC---CCCCeE
Confidence 999999988766543 45899998888877775 44332221 124455555432111000000 00221 126776
Q ss_pred EEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 222 VHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 222 ~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
++++|.. ....+.++|+|++.|+|.++|+++++++.+++..
T Consensus 353 ~~~~g~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 398 (417)
T 2ip4_A 353 VFHAGTRREGGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGF 398 (417)
T ss_dssp EEESSEEESSSSEEECSSEEEEEEEEESSHHHHHHHHHHHGGGSBC
T ss_pred EEECceEeeCCeEEecCCcEEEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 6666652 1223355999999999999999999999998864
No 35
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.96 E-value=2.4e-28 Score=262.66 Aligned_cols=276 Identities=21% Similarity=0.232 Sum_probs=199.8
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEEe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+.|.+|+.++++++|||+||||..++ +|+||++|+|++|+.++++.+... ++.+++|+||+|.+|+++.+++|
T Consensus 164 ~~s~~e~~~~a~~igyPvvvKp~~G~-Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d 242 (675)
T 3u9t_A 164 AQDLETFRREAGRIGYPVLLKAAAGG-GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFAD 242 (675)
T ss_dssp CCCTTHHHHHHHHSCSSBCCBCCC-------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEEC
T ss_pred CCCHHHHHHHHHhCCCcEEEEECCCC-CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEc
Confidence 57889999999999999999998755 899999999999999998765421 35699999999889999999999
Q ss_pred cCCeEEEEee-eeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013701 77 RDKSILCYPV-VETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 77 ~~G~~~~~~~-~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
.+|+++.+.. .+...+.+.......|++ +++++.+++.+.+.++++++||+|++++||+++++|++||+|+|||++++
T Consensus 243 ~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 243 RHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp SSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred CCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEeccccccCC
Confidence 8888765532 222333444444567886 99999999999999999999999999999999988899999999999976
Q ss_pred CCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHHHH---cCCCcEEEec--c
Q 013701 155 GHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL---SIPGATVHWY--D 226 (438)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~---~~pg~~~~~~--~ 226 (438)
..++...+|+|+++++++.++|.+++.... ..+.++.++++.+.... .+.|....+..+. ..|++.+... .
T Consensus 323 ~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aedp~~-~f~P~~G~l~~~~~p~~~~gvr~d~~~~~ 401 (675)
T 3u9t_A 323 HPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEG-DFLPASGRLMLYREAAAGPGRRVDSGVRE 401 (675)
T ss_dssp HHHHHHTTTCCHHHHHHHHHTTCCCSCCTTTCCCCSEEEEEEEESCCTTT-TSCCCCCBCSEEECCCCCTTEEEEESCCT
T ss_pred chhhhhhcCCCHHHHHHHHHCCCCCCCCccccccCcceeEEEEEeccCcc-cccCCCCEEEEEECCCCCCCEEEEecccC
Confidence 666667789999999999999999875432 23446667777643211 1211101111110 1245544331 1
Q ss_pred cccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHH
Q 013701 227 KPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILT 294 (438)
Q Consensus 227 ~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~ 294 (438)
.....+ ...+|+|++.|+|+++|++++.++++++. +.|-..+.+.+..+...-.
T Consensus 402 G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~--------------i~g~~tn~~~~~~~~~~~~ 457 (675)
T 3u9t_A 402 GDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETS--------------VGGLRTNLAFLRRILGHPA 457 (675)
T ss_dssp TCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCTHHHHHHHHTCHH
T ss_pred CCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEE--------------EECccCCHHHHHHHhCCHH
Confidence 112221 35899999999999999999999998763 4455667777776665433
No 36
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.95 E-value=1.4e-26 Score=236.85 Aligned_cols=251 Identities=14% Similarity=0.136 Sum_probs=182.6
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.++++++|||+||||..+ ++|+||++++|++|+.++++.+... ...++|||||+| .|+++.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~PvvvKp~~g-~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~ 199 (424)
T 2yw2_A 122 VFTDFEKAKEYVEKVGAPIVVKADGL-AAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMI 199 (424)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSC-CTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCcEEEEeCCC-CCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEE
Confidence 35789999999999999999999765 4899999999999999999887431 246999999997 999999997
Q ss_pred ecCCeEEEEeeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHH-HHHHHHHHHHc-----CceeEEEEEEEEeCCC
Q 013701 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
+++ .++.++...+... ++ .....+.|.+ +++++.+++ ++++.+++++| +++|++++||+++++|
T Consensus 200 ~G~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g 278 (424)
T 2yw2_A 200 NGD-RYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG 278 (424)
T ss_dssp ETT-EEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE
T ss_pred cCC-EEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 533 3433333321111 11 1123567887 899999988 47888888775 7889999999999888
Q ss_pred cEEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEecccc-ccC-----CCccchhhhHHH
Q 013701 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEA-EGE-----RGFYLAHQLIGK 213 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~-~~~-----~~~~~~~~~i~~ 213 (438)
+||+|+|||+|++.++.+. .+++|+.+.+++.+.|. ++++..... .++..++... .+. ..+. +++.
T Consensus 279 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~-~a~~~~~~~~g~~~~~~~g~~i~----~~~~ 351 (424)
T 2yw2_A 279 -PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHIKEDER-YALDVVLASRGYPEKPETGKIIH----GLDY 351 (424)
T ss_dssp -EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCCCBCSS-EEEEEEEECTTTTSSCCCCCBCB----CHHH
T ss_pred -cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccccCC-cEEEEEEecCCCCCCCCCCCcCc----Cccc
Confidence 9999999999988776544 45888888888776664 554432222 2333333221 111 1122 5655
Q ss_pred HHcCCCcEEEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 214 ALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 214 ~~~~pg~~~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+...|+++++.+|.. ....++++|+|++.|+|.++|+++++++.+++..
T Consensus 352 ~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 405 (424)
T 2yw2_A 352 LKSMEDVVVFHAGTKKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCF 405 (424)
T ss_dssp HHTSTTEEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred ccCCCCeEEEEcceEeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 555788876555542 2345689999999999999999999999998864
No 37
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.95 E-value=7.1e-27 Score=241.60 Aligned_cols=269 Identities=17% Similarity=0.175 Sum_probs=190.6
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.++|.+|+.++++++|||+||||..++ +|+||++++|++|+.++++.+.. ....++|||||+|.+|+++.+++
T Consensus 142 ~~~~~~~~~~~~~~~g~PvvvKp~~g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 220 (461)
T 2dzd_A 142 PVDGLEDVVAFAEAHGYPIIIKAALGG-GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILG 220 (461)
T ss_dssp CCSSHHHHHHHHHHHCSCEEEEESTTC-SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEE
Confidence 467899999999999999999997655 89999999999999998876531 12459999999987899999999
Q ss_pred ecCCeEE-EEeeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 76 GRDKSIL-CYPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~-~~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+.+|+++ .++..+...+.+.....+.|. .++++..+++.+.+.++++++|+.|.+++||++++ |++||+|+|||+++
T Consensus 221 ~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 221 DYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp CTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESSCCG
T ss_pred cCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECCCCC
Confidence 8888765 343333444444444456787 59999999999999999999999999999999997 78999999999987
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC---------CCCceEEEEeccccccCCCccchhhhHHHHH--cCCCcEE
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---------KTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATV 222 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---------~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~~ 222 (438)
+.+++...+|+|+++.+++.++|.+++.... ..+.++..++.... +...+.+....+..+. ..+++.+
T Consensus 300 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~-~~~~~~p~~g~i~~~~~~~~~~v~~ 378 (461)
T 2dzd_A 300 EHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTED-PLNNFMPDTGKIMAYRSGGGFGVRL 378 (461)
T ss_dssp GGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEE-GGGTTEECCEECSEEECCCCTTEEE
T ss_pred ceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeecccC-CccCccCCCCeeeEEecCCCCCeEe
Confidence 6656666779999999999999998875421 11222222222211 1001110000011100 0122222
Q ss_pred EecccccccCC--------ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHH
Q 013701 223 HWYDKPEMRQQ--------RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAA 290 (438)
Q Consensus 223 ~~~~~~~~~~g--------~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~ 290 (438)
.+. ....| +.+|+|++.|+|+++|+++++++++.+.. -|..+|......+.
T Consensus 379 --~~~-~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~--------------~g~~~~i~~~~~~~ 437 (461)
T 2dzd_A 379 --DAG-NGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRI--------------RGIKTNIPFLENVV 437 (461)
T ss_dssp --EES-SCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE--------------ESSCCSHHHHHHHH
T ss_pred --ecc-cccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEE--------------eCCcCCHHHHHHHh
Confidence 111 01122 34899999999999999999999998752 22367777655443
No 38
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.95 E-value=6.4e-27 Score=241.39 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=179.3
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+|+.+++++++||+||||..++ +|+||++++|++|+.++++.+.. ....++|||||+| .|+++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~PvVvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 220 (451)
T 2yrx_A 143 AFTSYEEAKAYIEQKGAPIVIKADGLA-AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFV 220 (451)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEECC-----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEE
T ss_pred EECCHHHHHHHHHhcCCcEEEEeCCCC-CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEE
Confidence 367899999999999999999997654 89999999999999999887632 1256999999997 999999997
Q ss_pred ecCCeEEEEeeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHH-HHHHHHHHHHc-----CceeEEEEEEEEeCCC
Q 013701 76 GRDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELA-TDVAHKAVSSL-----EGAGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i-~~~a~~i~~~l-----g~~G~~~ve~~~~~~g 140 (438)
|++ .+..++..++... ++ .....+.|.+ +++++.+++ ++++.+++++| +++|++++||+++++|
T Consensus 221 dG~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g 299 (451)
T 2yrx_A 221 NGE-KVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG 299 (451)
T ss_dssp ETT-EEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred cCC-EEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 533 2333333322111 11 1123467887 899999888 77888887765 7789999999999888
Q ss_pred cEEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEecccc-cc---C--CCccchhhhHHH
Q 013701 141 QILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEA-EG---E--RGFYLAHQLIGK 213 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~-~~---~--~~~~~~~~~i~~ 213 (438)
+||+|+|||+|+++++++. .+++|+.+.+++.+.|. +++.... ...++.++++.. ++ . ..++ ++++
T Consensus 300 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-~~~~~~~-~~~~~~~~l~~~g~p~~~~~g~~i~----~~~~ 372 (451)
T 2yrx_A 300 -PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGK-ELELEWT-DEAVLGVVLAAKGYPGAYERGAEIR----GLDR 372 (451)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTC-CCCCCBC-SSEEEEEEEEETTTTSSCCCCCEEB----CGGG
T ss_pred -cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCC-CCCcccc-CCceEEEEEecCCcCCCCCCCCcCc----Cccc
Confidence 9999999999988876544 45888888777776664 4433322 224455555432 11 0 1122 4444
Q ss_pred HHcCCCcEEEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 214 ALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 214 ~~~~pg~~~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+ . |++.++++|+. ..+.++++|+|++.|+|.++|+++++++.+++++
T Consensus 373 ~-~-~~~~v~~~G~~~~~~~~~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~ 424 (451)
T 2yrx_A 373 I-S-PDALLFHAGTKREGGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDC 424 (451)
T ss_dssp S-C-TTSEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBC
T ss_pred c-C-CCCEEEeCcccccCCeEEcCCCeEEEEEEEeCCHHHHHHHHHHHhhcccc
Confidence 4 4 88887777763 3456799999999999999999999999998864
No 39
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.95 E-value=7.6e-27 Score=237.01 Aligned_cols=250 Identities=14% Similarity=0.083 Sum_probs=177.9
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCC
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||..+ ++|+|+++++|++|+.++++.+.. ..+.+++||||+| .|++++++. .+|
T Consensus 129 ~~~~~~~~~~~~~~~g~P~vvKp~~g-~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~-~~g 205 (403)
T 4dim_A 129 VVRNENELKNALENLKLPVIVKATDL-QGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFV-YKN 205 (403)
T ss_dssp CCCSHHHHHHHHHTSCSSEEEECSCC------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEE-ETT
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCC-CCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEE-ECC
Confidence 36789999999999999999999765 489999999999999999987642 2355999999998 999999986 367
Q ss_pred eEEEEeeeeeEEec---CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCcee-EEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013701 80 SILCYPVVETIHKE---NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAG-IFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 80 ~~~~~~~~e~~~~~---g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G-~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
++..+...++.... +....++.|..+++++.+++.+++.+++++||+.| ++|+||+++ +|++||+|+|||+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~-~~~~~~iEiN~R~~~~~ 284 (403)
T 4dim_A 206 DVLFVMPHGDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK-DNEVYIIELTGRVGANC 284 (403)
T ss_dssp EEEEEEEEEEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE-TTEEEEEEEESSCCSTT
T ss_pred EEEEEEEecceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE-CCcEEEEEEcCCCCCCc
Confidence 88776665544322 22345567888999999999999999999999996 999999998 67899999999999766
Q ss_pred Cc--ceeeccCcHHHHHHHHHhCCCCCC-CCC--CCCceEEEEe--ccccccC-CCccchhhhHHHHHcCCCcE-EEecc
Q 013701 156 HH--TIESCYTSQFEQHMRAVVGLPLGD-PSM--KTPAAIMYNL--LGEAEGE-RGFYLAHQLIGKALSIPGAT-VHWYD 226 (438)
Q Consensus 156 ~~--~~~~~~~~~~~~~l~~~~G~~l~~-~~~--~~~~~~~~~i--l~~~~~~-~~~~~~~~~i~~~~~~pg~~-~~~~~ 226 (438)
.. ....+|+|+++.+++.++|.++.. ... ....+....+ .....+. ..+. ... ...++++ +.++.
T Consensus 285 ~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~----~~~--~~~~~v~~~~~~~ 358 (403)
T 4dim_A 285 LPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEIL----NSN--AKDDDIVEITFFK 358 (403)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTCCTHHHHTTCCSSCCEEEEEEECCSSCCEEEEEEE----ECC--CCCTTEEEEEECC
T ss_pred HHHHHHHHhCcCHHHHHHHHHcCCCccccccccccccccceEEEEEecCCCeEEEeee----ccc--ccCCCeEEEEEEc
Confidence 43 345679999999999999998822 111 1112222222 2211111 1111 000 0122321 22222
Q ss_pred cc------cccCCceeEEEEEecCCHHHHHHHHHHHhhhcc
Q 013701 227 KP------EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDS 261 (438)
Q Consensus 227 ~~------~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~ 261 (438)
.+ ..++++++|+|++.|+|.++|+++++++.+++.
T Consensus 359 ~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~~~ 399 (403)
T 4dim_A 359 EENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINNIN 399 (403)
T ss_dssp CTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhccEE
Confidence 11 122346899999999999999999999998764
No 40
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.95 E-value=9.8e-27 Score=240.02 Aligned_cols=250 Identities=17% Similarity=0.121 Sum_probs=180.4
Q ss_pred cccCHHHHHHHHHhhCCc-EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~ 74 (438)
.+++.+|+.++++++||| +||||..++ +|+|+++++|++|+.++++.+... ...++|||||+| +|+++.++
T Consensus 148 ~~~~~~~~~~~~~~~g~P~vvvKp~~~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~ 225 (452)
T 2qk4_A 148 AFTKPEEACSFILSADFPALVVKASGLA-AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCF 225 (452)
T ss_dssp EESSHHHHHHHHHHCSSCEEEEEESBC----CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEE
T ss_pred EECCHHHHHHHHHhCCCCeEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEE
Confidence 357899999999999999 999997654 899999999999999999877431 256999999996 99999999
Q ss_pred EecCCe-EEEEeeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHHH-HHHHHHHHHc-----CceeEEEEEEEEeC
Q 013701 75 RGRDKS-ILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTN 138 (438)
Q Consensus 75 ~~~~G~-~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~ 138 (438)
+| |+ +..++..++... ++ .....+.|++ +++++.++++ +++.+++++| +++|++++||++++
T Consensus 226 ~d--G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~ 303 (452)
T 2qk4_A 226 TD--GKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK 303 (452)
T ss_dssp EC--SSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET
T ss_pred EC--CCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC
Confidence 74 54 555665543322 11 1233567887 8999999886 6888888765 67899999999998
Q ss_pred CCcEEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCC--CCceEEEEecccc-ccC-----CCccchhh
Q 013701 139 NGQILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMK--TPAAIMYNLLGEA-EGE-----RGFYLAHQ 209 (438)
Q Consensus 139 ~g~~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~--~~~~~~~~il~~~-~~~-----~~~~~~~~ 209 (438)
+| +||+|+|||+++++++++. .+++|+.+.+++.+.| +++..... ....++..++... .+. ..+.
T Consensus 304 ~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g-~l~~~~~~~~~~~~a~~~~l~~~g~~~~~~~g~~i~---- 377 (452)
T 2qk4_A 304 NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDG-LLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEIT---- 377 (452)
T ss_dssp TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTT-CGGGGCCCBCTTCEEEEEEEECTTTTSSCCCSCBCB----
T ss_pred CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcC-CCCcccceecCCCcEEEEEEECCCCCCCCCCCCccc----
Confidence 88 9999999999988876444 4588888877766555 45443222 1221333333221 111 0222
Q ss_pred hHHHHHcCCCcEEEecccc-----cccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 210 LIGKALSIPGATVHWYDKP-----EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 210 ~i~~~~~~pg~~~~~~~~~-----~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+++.+ ..|+++++++|.. ....++++|+|++.|+|.++|+++++++.++++.
T Consensus 378 ~l~~~-~~~~v~~~~~G~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~ 434 (452)
T 2qk4_A 378 GFPEA-QALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKF 434 (452)
T ss_dssp CHHHH-HHTTCEEEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBC
T ss_pred Ccccc-CCCCcEEEECcEEeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhhccc
Confidence 45444 4588887777652 2345689999999999999999999999998864
No 41
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.95 E-value=5.4e-28 Score=260.12 Aligned_cols=277 Identities=17% Similarity=0.181 Sum_probs=154.9
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+.|.+++.++++++|||+||||+.++ +|+||++++|++|+.++++.+... ++.++||+||+|.+|+++.+++
T Consensus 137 ~~~s~~e~~~~a~~igyPvVvKp~~gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~ 215 (681)
T 3n6r_A 137 LIEDADEAVKISNQIGYPVMIKASAGG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLC 215 (681)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEEEEC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEE
Confidence 356889999999999999999998755 899999999999999998876421 3569999999988999999999
Q ss_pred ecCCeEEEEeeee-eEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 76 GRDKSILCYPVVE-TIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~~~~~e-~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|+++.++..+ .+++.+.......|++ +++++.+++.+.+.++++++||+|++++||+++++|++||+|+|||+++
T Consensus 216 d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~~ 295 (681)
T 3n6r_A 216 DSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQV 295 (681)
T ss_dssp CSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCCT
T ss_pred eCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccCC
Confidence 9888877665433 3445555555567887 9999999999999999999999999999999998889999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCCC---CCCceEEEEeccccccCCCccchhhhHHH-----------------
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPSM---KTPAAIMYNLLGEAEGERGFYLAHQLIGK----------------- 213 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~i~~----------------- 213 (438)
+.+++...+|+|+++.+++.++|.+++.... ....++.++++++.... .+.|....+..
T Consensus 296 ~~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aedp~~-~f~p~~G~i~~~~~p~~~~~~~~~~~~~ 374 (681)
T 3n6r_A 296 EHPVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYR-GFLPSIGRLTRYRPPAETAAGPLLVNGK 374 (681)
T ss_dssp THHHHHHHHTCCHHHHHHHHHTSCCCSSCTTTCCCCSEEEEEEEESEEGGG-TTEECCEECSCEECCCC-----------
T ss_pred CcHHhHHHhCCCHHHHHHHHHCCCCCCCCccccceeEEEEEEEEecCCccc-ccCCCCcEEEEEECCCCCcccccccccc
Confidence 7667777789999999999999998875422 23445666766543211 11110001100
Q ss_pred H-----HcCCCcEEEe--cccccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHH
Q 013701 214 A-----LSIPGATVHW--YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLP 284 (438)
Q Consensus 214 ~-----~~~pg~~~~~--~~~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~ 284 (438)
| ..-+++.+.. +......+ ...+|++++.|+|+++|++++.++++.+ .+-|-..+.+
T Consensus 375 w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~--------------~i~g~~tn~~ 440 (681)
T 3n6r_A 375 WQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSF--------------EVEGIGHNLP 440 (681)
T ss_dssp ---------CCEEEEESCCTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHC--------------EECSSCCSHH
T ss_pred cccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcC--------------EEECccCCHH
Confidence 0 0012333221 11111111 2468999999999999999999999876 3455577888
Q ss_pred HHHHHHHHHH
Q 013701 285 VMKDAAKILT 294 (438)
Q Consensus 285 ~~~~~~~~L~ 294 (438)
.+..+...-.
T Consensus 441 ~~~~~~~~~~ 450 (681)
T 3n6r_A 441 FLSAVMDHPK 450 (681)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHhCCHh
Confidence 8888775533
No 42
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.95 E-value=1.4e-26 Score=237.46 Aligned_cols=256 Identities=15% Similarity=0.148 Sum_probs=181.2
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+++.+++.++++++|||+||||..+ ++|+||++++|++|+.++++.+.. ....++|||||+| .|+++.+++
T Consensus 127 ~~~~~~ea~~~~~~~g~PvVvKp~~~-~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~ 204 (431)
T 3mjf_A 127 NFTDVEAALAYVRQKGAPIVIKADGL-AAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMV 204 (431)
T ss_dssp EESCHHHHHHHHHHHCSSEEEEESSS-CTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEE
T ss_pred eeCCHHHHHHHHHHcCCeEEEEECCC-CCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEE
Confidence 36789999999999999999999754 489999999999999999987642 1346999999997 999999998
Q ss_pred ecCCeEEEEeeeeeEEe--cCe------eeEEEcCCC-CCHHHHHHHHHH----HHHHHHHcC--ceeEEEEEEEEeCCC
Q 013701 76 GRDKSILCYPVVETIHK--ENI------CHIVKAPAA-VPWKISELATDV----AHKAVSSLE--GAGIFAVELFWTNNG 140 (438)
Q Consensus 76 ~~~G~~~~~~~~e~~~~--~g~------~~~~~~P~~-l~~~~~~~i~~~----a~~i~~~lg--~~G~~~ve~~~~~~g 140 (438)
|++ ++..++..+.... +++ .+.++.|.+ +++++.+++.+. +.+.++++| |+|++++||+++++|
T Consensus 205 dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g 283 (431)
T 3mjf_A 205 DGE-NVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADG 283 (431)
T ss_dssp ESS-CEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTS
T ss_pred cCC-EEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCC
Confidence 754 6665555443221 111 134577888 899999999875 566666655 489999999999888
Q ss_pred cEEEEEEcCCCCCCCCcce-eeccCcHHHHHHHHHhCCCCC-CCCCCCCceEEEEeccccccCCCccch--hhhHHHHHc
Q 013701 141 QILLNEVAPRPHNSGHHTI-ESCYTSQFEQHMRAVVGLPLG-DPSMKTPAAIMYNLLGEAEGERGFYLA--HQLIGKALS 216 (438)
Q Consensus 141 ~~~viEiNpR~~~~~~~~~-~~~~~~~~~~~l~~~~G~~l~-~~~~~~~~~~~~~il~~~~~~~~~~~~--~~~i~~~~~ 216 (438)
++||+|+|||+|++....+ ..+++|+++.+++.+.|.... ........++.+.+.+..++. .+.++ +.+++++..
T Consensus 284 ~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~l~~~~~~~~~~~a~~vv~a~~gyp~-~~~~g~~i~~~~~~~~ 362 (431)
T 3mjf_A 284 QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPA-DYRQGDVIHGLPQQEV 362 (431)
T ss_dssp CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTCGGGCCCCBCSSCEEEEEEEETTTTS-CCCCCCBCBCCCSSCB
T ss_pred CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCCCCCCCccccCCcEEEEEecCCCcCc-cCCCCCEeeCCccccC
Confidence 8999999999986665433 356999999999999986322 122222334433333333321 11110 113332222
Q ss_pred CCCcEEEeccc------ccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 217 IPGATVHWYDK------PEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 217 ~pg~~~~~~~~------~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
+++.+...+. .-...|.|+++|++.|+|.++|+++++++++.|++
T Consensus 363 -~~~~~~~ag~~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~ 413 (431)
T 3mjf_A 363 -KDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQW 413 (431)
T ss_dssp -TTEEEEESSEEECTTSCEEECSSEEEEEEEECSSHHHHHHHHHHHHTTCBC
T ss_pred -CCcEEEEeeeEecCCCEEEecCCeEEEEEEecCCHHHHHHHHHHHhccCCC
Confidence 5654332221 11234678889999999999999999999999875
No 43
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.95 E-value=4.1e-26 Score=233.17 Aligned_cols=247 Identities=13% Similarity=0.145 Sum_probs=175.2
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEEe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
+++.+|+.++++++|||+||||..+ ++|+||++++|++|+.++++.+... ...++|||||+| +|+++.+++|
T Consensus 123 ~~~~~~~~~~~~~~~~P~vvKp~~~-~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~d 200 (422)
T 2xcl_A 123 FTSFDEAKAYVQEKGAPIVIKADGL-AAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFVK 200 (422)
T ss_dssp ESCHHHHHHHHHHHCSSEEEEESSC-GGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCC-CCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEEc
Confidence 5789999999999999999999765 4899999999999999999887431 246999999996 9999999985
Q ss_pred cCCeEEEEeeeeeEEe--cC------eeeEEEcCCC-CCHHHHHHHH-HHHHHHHHHc-----CceeEEEEEEEEeCCCc
Q 013701 77 RDKSILCYPVVETIHK--EN------ICHIVKAPAA-VPWKISELAT-DVAHKAVSSL-----EGAGIFAVELFWTNNGQ 141 (438)
Q Consensus 77 ~~G~~~~~~~~e~~~~--~g------~~~~~~~P~~-l~~~~~~~i~-~~a~~i~~~l-----g~~G~~~ve~~~~~~g~ 141 (438)
++ .++.+...++... ++ .....+.|.+ +++++.++++ +++.+++++| +++|++++||+++++|
T Consensus 201 G~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g- 278 (422)
T 2xcl_A 201 GE-KVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG- 278 (422)
T ss_dssp TT-EEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-
T ss_pred CC-EEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC-
Confidence 33 3333333332211 11 1123567887 8999998885 4888887765 7889999999999888
Q ss_pred EEEEEEcCCCCCCCCccee-eccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEecccc-ccC-----CCccchhhhHHHH
Q 013701 142 ILLNEVAPRPHNSGHHTIE-SCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEA-EGE-----RGFYLAHQLIGKA 214 (438)
Q Consensus 142 ~~viEiNpR~~~~~~~~~~-~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~-~~~-----~~~~~~~~~i~~~ 214 (438)
+||+|+|||+|+++++++. .++.|+.+.+++.+.| +++.+..... +++..++... .+. ..+. +++++
T Consensus 279 ~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g-~l~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~i~----~~~~~ 352 (422)
T 2xcl_A 279 SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDD-KEVDLRWKDT-AAVSVVLASEGYPESYAKGTPIG----SLAAE 352 (422)
T ss_dssp EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTT-CCCCCCBCSC-EEEEEEEEETTTTSCCCSCCBCC----CCCCC
T ss_pred cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcC-CcCcccccCC-ceEEEEEECCCCCCCCCCCCccc----CcccC
Confidence 9999999999988876554 4578887777666555 5554432222 3333333221 110 0111 33322
Q ss_pred HcCCCcEEEecc------cccccCCceeEEEEEecCCHHHHHHHHHHHhhhccC
Q 013701 215 LSIPGATVHWYD------KPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSS 262 (438)
Q Consensus 215 ~~~pg~~~~~~~------~~~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~ 262 (438)
. |++.++.++ +...+ +.++|||++.|+|.++|+++++++.+.++.
T Consensus 353 -~-~~~~~~~~g~~~~~~~~~~~-~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~ 403 (422)
T 2xcl_A 353 -T-EQVVVFHAGTKAEGGEFVTN-GGRVANVTAFDETFEAARDRVYKAVDEIFK 403 (422)
T ss_dssp -S-SSEEEEESSEEECSSSEEEC-SSEEEEEEEEESSHHHHHHHHHHHHHHHCC
T ss_pred -C-CCcEEEEeeeEeeCCEEEeC-CCceEEEEEEeCCHHHHHHHHHHHHhccee
Confidence 2 777765555 22233 356999999999999999999999998764
No 44
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.95 E-value=6.2e-26 Score=239.76 Aligned_cols=276 Identities=14% Similarity=0.158 Sum_probs=193.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC--CCCcEEEeeccCCceeEEEEEEEecCCe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG--FDRGLYVEKWAPFVKELAVIVVRGRDKS 80 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~--~~~~~lvEe~I~g~~E~sv~~~~~~~G~ 80 (438)
++|.+|+.++++++|||+||||..++ +|+||++|+|++|+.++++.+.. ....++|||||+|++|+++.+++|.+|+
T Consensus 220 ~~~~~e~~~~~~~~g~PvVvKp~~g~-gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~ 298 (554)
T 1w96_A 220 CTSPEDGLQKAKRIGFPVMIKASEGG-GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGT 298 (554)
T ss_dssp CSSHHHHHHHHHHHCSSEEEEETTCC-TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC-CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCC
Confidence 47899999999999999999997655 89999999999999999987642 2355999999997799999999987788
Q ss_pred EEEE-eeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEe-CCCcEEEEEEcCCCCCCCCc
Q 013701 81 ILCY-PVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGHH 157 (438)
Q Consensus 81 ~~~~-~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~~~~~~ 157 (438)
++.. +..+..+..........|.. ++++..+++.+++.+++++||++|++++||+++ ++|++||+|+|||++++..+
T Consensus 299 vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~ 378 (554)
T 1w96_A 299 NISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPT 378 (554)
T ss_dssp EEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHH
T ss_pred EEEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceeh
Confidence 6543 32223333222222356776 899999999999999999999999999999998 67889999999999977544
Q ss_pred ceeeccCcHHHHHHHHHhCCCCCCCC--------------------------------CCCCceEEEEeccccccCCCcc
Q 013701 158 TIESCYTSQFEQHMRAVVGLPLGDPS--------------------------------MKTPAAIMYNLLGEAEGERGFY 205 (438)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~G~~l~~~~--------------------------------~~~~~~~~~~il~~~~~~~~~~ 205 (438)
+...+|+|+++.+++.++|.++.... .....++..+++..... ..+.
T Consensus 379 ~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~-~~~~ 457 (554)
T 1w96_A 379 TEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPN-DGFK 457 (554)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCC-CSSC
T ss_pred hhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccCCC-CCcc
Confidence 44578999999999999999875320 01122233444543211 1110
Q ss_pred chhhh-HHHH--HcCCCcEEEec---ccc-cccCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEe
Q 013701 206 LAHQL-IGKA--LSIPGATVHWY---DKP-EMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMG 278 (438)
Q Consensus 206 ~~~~~-i~~~--~~~pg~~~~~~---~~~-~~~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~g 278 (438)
+ ..+ ++.+ ...|++.++.. |.. ......++|+|++.|+|.++|+++++++++++... +.
T Consensus 458 p-~~G~i~~~~~~~~~~v~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~-------g~------ 523 (554)
T 1w96_A 458 P-SGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR-------GD------ 523 (554)
T ss_dssp C-CSSSEEEECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTC-------C-------
T ss_pred c-CCeEEeEEecCCCCCEEEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEE-------ee------
Confidence 0 001 1111 11245433321 110 01113589999999999999999999999988641 21
Q ss_pred cCCCHHHHHHHHHHHH
Q 013701 279 SDSDLPVMKDAAKILT 294 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~ 294 (438)
-.+|.+.+..+...-.
T Consensus 524 ~~~~i~~~~~~~~~~~ 539 (554)
T 1w96_A 524 FRTTVEYLIKLLETED 539 (554)
T ss_dssp ---CCHHHHHHHTSHH
T ss_pred ccCCHHHHHHHhcCHh
Confidence 1456777666654433
No 45
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.94 E-value=2.9e-26 Score=258.66 Aligned_cols=284 Identities=18% Similarity=0.188 Sum_probs=159.5
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.++|.+|+.++++++|||+||||+.++ +|+||++|+|++|+.++++.+.. ..+.++||+||++++|+++.+++
T Consensus 156 ~v~s~eea~~~a~~igyPvVVKp~~g~-GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~ 234 (1165)
T 2qf7_A 156 LPDDMAEVAKMAAAIGYPVMLKASWGG-GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILG 234 (1165)
T ss_dssp -----------------------------------------------------------------CCCSSEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEE
Confidence 356889999999999999999998755 89999999999999998877642 13569999999977999999999
Q ss_pred ecCCeEEE-EeeeeeEEecCeeeEEEcCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEe-CCCcEEEEEEcCCCC
Q 013701 76 GRDKSILC-YPVVETIHKENICHIVKAPA-AVPWKISELATDVAHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPH 152 (438)
Q Consensus 76 ~~~G~~~~-~~~~e~~~~~g~~~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~ 152 (438)
|.+|+++. ++..+..++.+.....+.|+ .+++++.+++.+++.++++++||+|++++||+++ ++|++||+|+|||++
T Consensus 235 D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 235 DTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQ 314 (1165)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred cCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCC
Confidence 88887654 45445555555556667788 4999999999999999999999999999999999 778999999999999
Q ss_pred CCCCcceeeccCcHHHHHHHHHhCCCCCCCC---------CCCCceEEEEeccccccCCCccchhhhHHHHH--cCCCcE
Q 013701 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPS---------MKTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGAT 221 (438)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~---------~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~ 221 (438)
++.+++...+|+|+++.+++.++|.+++... .....++.+++..+. +...+.+....+..+. ..+++.
T Consensus 315 ~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~-P~~~f~p~~G~I~~~~~~~~~gvr 393 (1165)
T 2qf7_A 315 VEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTED-PEHNFIPDYGRITAYRSASGFGIR 393 (1165)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEE-TTTTTEECCEECCEEECCCCTTEE
T ss_pred CCchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecC-CccCcCCCCcEEEEEecCCCCceE
Confidence 8777776678999999999999999887431 112334445555432 2111111000111111 113333
Q ss_pred EEe---cccccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc
Q 013701 222 VHW---YDKPEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 222 ~~~---~~~~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~ 296 (438)
+.. +..... ..++.+|+|++.|+|+++|+++++++++++. +-|-..|.+.+..+...-...
T Consensus 394 vd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~--------------i~G~~tni~~~~~~~~~~~f~ 459 (1165)
T 2qf7_A 394 LDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFR--------------IRGVATNLTFLEAIIGHPKFR 459 (1165)
T ss_dssp EECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCE--------------EESSCCSHHHHHHHHTSHHHH
T ss_pred eeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEE--------------EecccCCHHHHHHHhcCHHhh
Confidence 321 111111 2247899999999999999999999999874 234468899888887655444
Q ss_pred CCcEE
Q 013701 297 SVPHE 301 (438)
Q Consensus 297 G~~~~ 301 (438)
.-.++
T Consensus 460 ~~~~~ 464 (1165)
T 2qf7_A 460 DNSYT 464 (1165)
T ss_dssp TTCCC
T ss_pred cCCcc
Confidence 43433
No 46
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.94 E-value=1.1e-26 Score=261.88 Aligned_cols=244 Identities=16% Similarity=0.203 Sum_probs=187.4
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc--CCCCcEEEeeccCCceeEEEEEEEecCC
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG--GFDRGLYVEKWAPFVKELAVIVVRGRDK 79 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~--~~~~~~lvEe~I~g~~E~sv~~~~~~~G 79 (438)
.+++.+|+.++++++|||+||||..++ ||+|+.+++|++|+.++++.+. ...+.++|||||+|.+|+++++++|.+|
T Consensus 148 ~v~~~~ea~~~~~~ig~PvVvKp~~~~-Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g 226 (1073)
T 1a9x_A 148 IAHTMEEALAVAADVGFPCIIRPSFTM-GGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKND 226 (1073)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-CCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence 367899999999999999999998754 8999999999999999988654 2235699999999988999999999888
Q ss_pred eEEEEeeeeeEEe----cCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeC-CCcEEEEEEcCCCC
Q 013701 80 SILCYPVVETIHK----ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGA-GIFAVELFWTN-NGQILLNEVAPRPH 152 (438)
Q Consensus 80 ~~~~~~~~e~~~~----~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~-G~~~ve~~~~~-~g~~~viEiNpR~~ 152 (438)
++..++..++... .|+ ...+.|+. ++++..+++++.+.++++++|++ |.+++||++++ +|++||+|+|||++
T Consensus 227 ~~v~~~~~e~~dp~~v~~g~-s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 227 NCIIVCSIENFDAMGIHTGD-SITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp CEEEEEEEEESSCTTSCGGG-SCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred CEEEEEEEecccCCccccCc-EEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 8877766654311 232 33456875 99999999999999999999999 99999999997 68899999999999
Q ss_pred CCCCcceeeccCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccC
Q 013701 153 NSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQ 232 (438)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~ 232 (438)
++..++..++|+++.+.+++.++|.+++....... +...+ ..+.|....+ +.++|+|.+++|++...+.
T Consensus 306 ~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~~i~--------~~~~~-a~f~p~~~~v--~~~ip~~~~~~~~~~~~~~ 374 (1073)
T 1a9x_A 306 RSSALASKATGFPIAKVAAKLAVGYTLDELMNDIT--------GGRTP-ASFEPSIDYV--VTKIPRFNFEKFAGANDRL 374 (1073)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBCTTT--------TTCSB-SCSCCBCSSE--EEEEEECCGGGCTTSCCBC
T ss_pred ccHHHHHHHhCCCHHHHHHHHHcCCChHHhhcccc--------CccCH-HHcccCCCcE--EEEcccccccccCCCCccc
Confidence 87666667889999999999999999876432110 10000 0111000011 1245666665555433333
Q ss_pred C---ceeEEEEEecCCHHHHHHHHHHHhh
Q 013701 233 Q---RKMGHITIVGSSMGLVESRLNSLLK 258 (438)
Q Consensus 233 g---~~iG~Vi~~G~~~~ea~~ka~~~~~ 258 (438)
+ +++|||+++|+|++||+.++.++++
T Consensus 375 ~~~~~~~G~v~~~g~~~~ea~~ka~~~l~ 403 (1073)
T 1a9x_A 375 TTQMKSVGEVMAIGRTQQESLQKALRGLE 403 (1073)
T ss_dssp CSSCCCCEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCccCcEEEEEEcCCHHHHHHHHHHhhc
Confidence 3 4569999999999999999999876
No 47
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.94 E-value=5.7e-26 Score=256.46 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=153.4
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEEEe
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~~~ 76 (438)
++|.+|+.++++++|||+||||..++ +|+||++|+|++|+.++++.+.. .+..++|||||+|.+|+++.+++|
T Consensus 166 v~s~eea~~~a~~iGyPvVVKP~~Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~D 244 (1236)
T 3va7_A 166 IKDAKEAKEVAKKLEYPVMVKSTAGG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGD 244 (1236)
T ss_dssp --------------------------------------------------------------------CCEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEec
Confidence 56889999999999999999997655 89999999999999999887542 235699999999889999999999
Q ss_pred cCCeEEEEeeee-eEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC-CcEEEEEEcCCCCC
Q 013701 77 RDKSILCYPVVE-TIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNN-GQILLNEVAPRPHN 153 (438)
Q Consensus 77 ~~G~~~~~~~~e-~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~-g~~~viEiNpR~~~ 153 (438)
++|++..++..+ ..+..+.......|++ +++++.+++.+.+.++++++||+|++++||+++++ |++||+|+|||+++
T Consensus 245 g~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 245 GFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp SSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred CCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 888876665432 3344444455567886 99999999999999999999999999999999974 78999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCCC--C-CCCceEEEEeccccccCCCccchhhhHHHHHcCCC-cEEEec--cc
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDPS--M-KTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPG-ATVHWY--DK 227 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~~--~-~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg-~~~~~~--~~ 227 (438)
+..++...+|+|+++.+++.++|.+++... . ....++.++++++.... .+.+....+.. ...|+ +.+... ..
T Consensus 325 ~~~~te~vtGvDlv~~~l~~a~G~~l~~~~~~~~~~g~Ai~~riyaedp~~-~f~p~~G~i~~-~~~p~gvrvd~~v~~G 402 (1236)
T 3va7_A 325 EHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVK-DFRPSPGQLTS-VSFPSWARVDTWVKKG 402 (1236)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCGGGCCCCCCSEEEEEEEESEETTT-TTEECCEECCE-EECCTTSEEEECCCTT
T ss_pred ccHHHHHHHCCCHHHHHHHHHCCCCCCCccccccccceEEEEEEecCCccc-ccCCCCceEEE-EEcCCccEecccccCC
Confidence 777777778999999999999999886431 1 23345556666543211 11100001111 11222 222211 11
Q ss_pred ccc--cCCceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc
Q 013701 228 PEM--RQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF 296 (438)
Q Consensus 228 ~~~--~~g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~ 296 (438)
... ..+.++|+|++.|+|+++|+++++++++.+. +.|-..+.+.+..+...-...
T Consensus 403 ~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~--------------i~G~~tn~~~~~~~~~~~~f~ 459 (1236)
T 3va7_A 403 TNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETA--------------VYGCITNIDYLRSIASSKMFK 459 (1236)
T ss_dssp CEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE--------------EESSCCSHHHHHHHHHCHHHH
T ss_pred CEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEE--------------EeCcccCHHHHHHHhCCHHHh
Confidence 111 1135789999999999999999999998763 456678899999888664443
No 48
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.94 E-value=2.3e-26 Score=258.99 Aligned_cols=277 Identities=17% Similarity=0.213 Sum_probs=200.3
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAVIVVR 75 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv~~~~ 75 (438)
.+.+.+++.++++++|||+||||+.++ ||+||++|+|++|+.++++.+... ++.+++|+||+|.+|+++.+++
T Consensus 140 ~v~s~eea~~~a~~iGyPvVVKP~~Gg-Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~ 218 (1150)
T 3hbl_A 140 PIKSYELAKEFAEEAGFPLMIKATSGG-GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIG 218 (1150)
T ss_dssp CBCSSSTTTTTGGGTCSSEEEECCC--------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEE
Confidence 367888999999999999999998755 899999999999999999876422 3569999999988999999999
Q ss_pred ecCCeEEE-EeeeeeEEecCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 76 GRDKSILC-YPVVETIHKENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 76 ~~~G~~~~-~~~~e~~~~~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
|.+|+++. +...+...+.+.......|+. ++++.++++.+.+.++++++||+|++++||+++++ ++||+|+|||+++
T Consensus 219 d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR~~g 297 (1150)
T 3hbl_A 219 DEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPRVQV 297 (1150)
T ss_dssp CSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECSCCT
T ss_pred eCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCCCCC
Confidence 98888654 444444555566566678884 99999999999999999999999999999999976 7999999999997
Q ss_pred CCCcceeeccCcHHHHHHHHHhCCCCCCC-----C----CCCCceEEEEeccccccCCCccchhhhHHHHH--cCCCcEE
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGLPLGDP-----S----MKTPAAIMYNLLGEAEGERGFYLAHQLIGKAL--SIPGATV 222 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~~l~~~-----~----~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~--~~pg~~~ 222 (438)
+.+++...+|+|+++.+++.++|.+++.. . ...+.++.++++.+.... .+.|....+..+. ..+|+.+
T Consensus 298 ~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~-~f~P~~G~i~~~~~p~~~gvr~ 376 (1150)
T 3hbl_A 298 EHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLN-DFMPDTGTIIAYRSSGGFGVRL 376 (1150)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGG-TSEECCCCCCEEECCCCTTEEE
T ss_pred CcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEeccCCcc-ccCCCCceEEEEEcCCCCceec
Confidence 77777678899999999999999998752 1 112446667776543211 1111000111110 1233333
Q ss_pred Ee---cccccccC--CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH
Q 013701 223 HW---YDKPEMRQ--QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM 295 (438)
Q Consensus 223 ~~---~~~~~~~~--g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~ 295 (438)
.- +......+ ...+|+|++.|+|+++|++++.++++++ .+.|-..+.+.+..+...-..
T Consensus 377 d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~--------------~i~G~~tn~~~~~~~~~~~~f 440 (1150)
T 3hbl_A 377 DAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM--------------RIRGVKTNIPFLINVMKNKKF 440 (1150)
T ss_dssp EESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHC--------------EEESSCCSHHHHHHHHHCHHH
T ss_pred cccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhce--------------EEeCccCCHHHHHHHhCCHHH
Confidence 21 11111111 1348999999999999999999999976 356677889998888765443
No 49
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.93 E-value=2.3e-25 Score=223.14 Aligned_cols=226 Identities=14% Similarity=0.030 Sum_probs=149.5
Q ss_pred hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEecCe
Q 013701 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENI 95 (438)
Q Consensus 16 igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g~ 95 (438)
+|||+||||+.++ +|+|+++++|.+|+..+ ...+++|||++| +|+++++++|..+. ..++..+.......
T Consensus 124 ig~P~vvKp~~g~-g~~gv~~v~~~~~~~~~-------~~~~~~ee~i~g-~e~sv~~~~d~~~~-~~~~~~~~~~~~~~ 193 (363)
T 4ffl_A 124 SKPPYFVKPPCES-SSVGARIIYDDKDLEGL-------EPDTLVEEYVEG-EVVSLEVVGDGSHF-AVVKETLVHIDETY 193 (363)
T ss_dssp SSSCEEEECSSCC-TTTTCEEEC------CC-------CTTCEEEECCCS-EEEEEEEEEESSCE-EECCCEEEEECTTS
T ss_pred cCCCEEEEECCCC-CCcCeEEeccHHHhhhh-------ccchhhhhhccC-cEEEEEEEEECCeE-EEEEEEEeccCCcc
Confidence 5799999997654 89999999999887532 345999999997 99999999886644 44444333222222
Q ss_pred eeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC-cceeeccCcHHHHHHHHH
Q 013701 96 CHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH-HTIESCYTSQFEQHMRAV 174 (438)
Q Consensus 96 ~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~-~~~~~~~~~~~~~~l~~~ 174 (438)
....+.|.+..+ ++++++.+++++++++|++++||+++++ .+||+|+|||+++... .+...+|+|+++.+++++
T Consensus 194 ~~~~~~p~~~~~----~~~~~a~~~~~~l~~~G~~~vef~~~~~-~~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~~ 268 (363)
T 4ffl_A 194 DCHMVTPLPANP----LFRQISHDLAANLPLKGIMDVEAIFGPK-GLRVIEIDARFPSQTPTVVYYSSGINLIELLFRAF 268 (363)
T ss_dssp CEEEEEECCCCH----HHHHHHHHHHHTTTCEEEEEEEEEEETT-EEEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHHT
T ss_pred cceeecchhHHH----HHHHHHHHHHHhCCccceeeeeeEEeCC-eEEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHHH
Confidence 234456776665 4778899999999999999999999965 5999999999875432 455678999999999999
Q ss_pred hCCCCCCCCCCC-CceEEEEeccccccCCCccchhhhHHHHHc-CCCcE-EEecccc---cccCCceeEEEEEecCCHHH
Q 013701 175 VGLPLGDPSMKT-PAAIMYNLLGEAEGERGFYLAHQLIGKALS-IPGAT-VHWYDKP---EMRQQRKMGHITIVGSSMGL 248 (438)
Q Consensus 175 ~G~~l~~~~~~~-~~~~~~~il~~~~~~~~~~~~~~~i~~~~~-~pg~~-~~~~~~~---~~~~g~~iG~Vi~~G~~~~e 248 (438)
+|.+++...... ..++...+.....+. ..+ .-+.+.. .+++. ++..... ....++++|+|+++|+|++|
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vi~~G~~~~e 343 (363)
T 4ffl_A 269 TDGVEEIRAIPENKYCIYEHLMFGENGV-LIP----VGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVFWGKDREE 343 (363)
T ss_dssp TTCCCCC----CCCEEEEEEEEECGGGB-EEE----CCHHHHTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEESSHHH
T ss_pred CCCCCCccccCCCceEEEEEEecCCCCc-cCC----CCceEEecCCCeeEEEecCCCCCEecCCCCceEEEEEEECCHHH
Confidence 999887654322 223333333332211 111 1112222 22221 1111110 12345789999999999999
Q ss_pred HHHHHHHHhhhcc
Q 013701 249 VESRLNSLLKEDS 261 (438)
Q Consensus 249 a~~ka~~~~~~i~ 261 (438)
|++|++++++.++
T Consensus 344 A~~k~~~al~~i~ 356 (363)
T 4ffl_A 344 TGAKRCKGLSVLK 356 (363)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 50
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.89 E-value=2.7e-22 Score=200.69 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=119.7
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEee
Q 013701 7 ESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (438)
Q Consensus 7 ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~ 86 (438)
+++.++++++|||+||||+.++ +|+|+.+++|++||.++++.+...+..+++|+||+| +|+++.++.+.. ....++
T Consensus 167 ~~~~~~~~~lg~PvvVKP~~gg-~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~G-~e~~v~vl~~~~--~~~~~v 242 (357)
T 4fu0_A 167 AAMKEIEANLTYPLFIKPVRAG-SSFGITKVIEKQELDAAIELAFEHDTEVIVEETING-FEVGCAVLGIDE--LIVGRV 242 (357)
T ss_dssp HHHHHHHHHCCSSEEEEETTCS-SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEESSS--EEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCCC-CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecCC-EEEEEEEEecCC--ceEEEE
Confidence 4566778899999999998765 899999999999999999998887788999999997 999999887543 333333
Q ss_pred eeeEEe----------cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 87 VETIHK----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 87 ~e~~~~----------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.+.... .+.....+.|+++++++.+++++++.+++++||++|+++|||+++++|++||+|||||||-
T Consensus 243 ~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~PG~ 319 (357)
T 4fu0_A 243 DEIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPGF 319 (357)
T ss_dssp EEEEECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred EEEEcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCCCCC
Confidence 322211 1223455789999999999999999999999999999999999999999999999999983
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.9e-22 Score=207.56 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=143.8
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhc------------CCCCcEEEeeccCCce--
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALG------------GFDRGLYVEKWAPFVK-- 67 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~------------~~~~~~lvEe~I~g~~-- 67 (438)
.+++.+|+.++++++|||+||||..++ ||+|+.+++|++|+.++++.+. ...+.++|||||+|.+
T Consensus 159 ~v~s~ee~~~~~~~lg~PvVVKP~~g~-gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~ 237 (474)
T 3vmm_A 159 RVTTLEDFRAALEEIGTPLILKPTYLA-SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGD 237 (474)
T ss_dssp EECSHHHHHHHHHHSCSSEEEEESSCC-TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHH
T ss_pred EECCHHHHHHHHHHcCCCEEEEECCCC-cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceee
Confidence 367899999999999999999998755 8999999999999999987652 1236799999999843
Q ss_pred ---------eEEEEEEEecCCeEEEEeeeeeEEec-CeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEE-EEEEEE
Q 013701 68 ---------ELAVIVVRGRDKSILCYPVVETIHKE-NICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIF-AVELFW 136 (438)
Q Consensus 68 ---------E~sv~~~~~~~G~~~~~~~~e~~~~~-g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~-~ve~~~ 136 (438)
|++++.+. .+|+...+...+..... ......+.|+.++++..+++++.+.++++++|++|.+ |+||++
T Consensus 238 ~~q~~~~~~e~sv~~v~-~dg~~~~v~i~~~~~~~~~~~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~ 316 (474)
T 3vmm_A 238 WYQTEGYSDYISIEGIM-ADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKL 316 (474)
T ss_dssp HCSSSSSCSEEEEEEEE-ETTEEEEEEEEEECCCBTTBCCEEEESCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred eeecccccceeEEEEEE-ECCeEEEEEEEeeccCCCccceEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEE
Confidence 28888665 35676555444332111 1223456788999999999999999999999999877 799999
Q ss_pred eCCCcEEEEEEcCCCCCCCCc--ceeeccCcHHHHHHHHHh-CCCCCCCC
Q 013701 137 TNNGQILLNEVAPRPHNSGHH--TIESCYTSQFEQHMRAVV-GLPLGDPS 183 (438)
Q Consensus 137 ~~~g~~~viEiNpR~~~~~~~--~~~~~~~~~~~~~l~~~~-G~~l~~~~ 183 (438)
+++|++||+|+|||++++..+ +...+|+|+++.+++.++ |.+++...
T Consensus 317 ~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~l~~~~ 366 (474)
T 3vmm_A 317 MKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPD 366 (474)
T ss_dssp EGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGGSCCCS
T ss_pred cCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCCCCCCc
Confidence 988899999999999865433 445679999999999999 99887654
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.88 E-value=2.4e-21 Score=195.19 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=127.8
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeee
Q 013701 9 AWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE 88 (438)
Q Consensus 9 ~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e 88 (438)
+.++++++|||+||||..++ +|+|+.+|+|++||.++++.+...+..+|||+||+|.+|+++.++.+.++. ..+..+
T Consensus 166 ~~~~~~~~g~PvvVKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~--~~~~~e 242 (377)
T 1ehi_A 166 WDKIVAELGNIVFVKAANQG-SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPL--VSEIGA 242 (377)
T ss_dssp HHHHHHHHCSCEEEEESSCC-TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCSCEEEEEEEESSSCE--EEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCC-CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCceEEEEEEcCCCcE--EEeeEE
Confidence 66777889999999998765 899999999999999999988766667999999997689999999765433 333333
Q ss_pred eEE-----e-----------cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013701 89 TIH-----K-----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 89 ~~~-----~-----------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
... . .|.....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||+|
T Consensus 243 i~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rpg 322 (377)
T 1ehi_A 243 HTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPG 322 (377)
T ss_dssp EECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred EEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCCC
Confidence 221 0 110134467889999999999999999999999999999999998888999999999999
Q ss_pred CCCCc----ceeeccCcH---HHHHHHHHh
Q 013701 153 NSGHH----TIESCYTSQ---FEQHMRAVV 175 (438)
Q Consensus 153 ~~~~~----~~~~~~~~~---~~~~l~~~~ 175 (438)
.+.+- ...++|+|+ +..+++.++
T Consensus 323 ~t~~s~~p~~~~a~G~~~~~l~~~li~~al 352 (377)
T 1ehi_A 323 FTNMSLFKRLWDYSDINNAKLVDMLIDYGF 352 (377)
T ss_dssp CSTTCGGGTGGGGGTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66531 123567777 334444443
No 53
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.87 E-value=2.6e-21 Score=194.48 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=121.8
Q ss_pred HHHHHHhhCCc-EEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee
Q 013701 9 AWRAGKQFGYP-LMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 9 ~~~~~~~igyP-vVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~ 87 (438)
+.++.+++||| +||||..++ +|+|+.+++|++||.++++.+...+..+|||+||+| +|+++.++.+. .....++.
T Consensus 171 ~~~~~~~lg~P~vvVKP~~gg-ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~--~~~~~~~~ 246 (372)
T 3tqt_A 171 YQRLLDRWGTSELFVKAVSLG-SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRG-REIECAVLGNG--APKASLPG 246 (372)
T ss_dssp HHHHHHHC---CEEEEESSCC-SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCCS-EEEEEEEEESS--SCEECCCE
T ss_pred HHHHHHhcCCCeEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCCC-EEEEEEEEeCC--CceEeeeE
Confidence 55777899999 999998766 799999999999999999988776777999999997 99999999764 23233332
Q ss_pred eeE-----------EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013701 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 88 e~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
+.. +..+.......|+.+++++.+++++++.+++++||++|++++||+++++|++||+|||||||-+
T Consensus 247 ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~PG~t-- 324 (372)
T 3tqt_A 247 EIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFT-- 324 (372)
T ss_dssp EEECC---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS--
T ss_pred EEecCCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECCCCcC--
Confidence 221 1123224456799999999999999999999999999999999999988999999999999833
Q ss_pred cceeeccCcHHHHHHHHHhCCCCC
Q 013701 157 HTIESCYTSQFEQHMRAVVGLPLG 180 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l~ 180 (438)
..++|..+.++ .|.++.
T Consensus 325 ------~~S~~p~~~~~-~G~~~~ 341 (372)
T 3tqt_A 325 ------NISMYPKMWEA-SGLPCP 341 (372)
T ss_dssp ------TTCHHHHHHHH-TTCCHH
T ss_pred ------ccCHHHHHHHH-hCCCHH
Confidence 34555555443 566544
No 54
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.87 E-value=1.4e-21 Score=197.01 Aligned_cols=142 Identities=22% Similarity=0.307 Sum_probs=112.2
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEee
Q 013701 7 ESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPV 86 (438)
Q Consensus 7 ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~ 86 (438)
+++.++++++|||+||||..++ +|.|+++++|++|+.++++.+...+..+|||+||+| +|+++.++.+ +....+++
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~G-~E~~v~vl~d--~~~~~~~~ 266 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMG-SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDA-REIEVGILGN--TDVKTTLP 266 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC-------CEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEES--SSCEECCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-eEEEEEEEeC--CCeeEEee
Confidence 5778888999999999998765 799999999999999999887655567999999997 9999999975 33434444
Q ss_pred eeeEEe-----------cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 87 VETIHK-----------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 87 ~e~~~~-----------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.+.... .+ ......|++++++..+++++++.+++++||++|++++||+++++|++||+|||||||-
T Consensus 267 ~ei~~~~~~~d~~~ky~~g-~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~ 343 (383)
T 3k3p_A 267 GEIVKDVAFYDYEAKYIDN-KITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGF 343 (383)
T ss_dssp EEEC------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred EEEecCCCccchhhcccCC-CeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCC
Confidence 332111 11 1234679999999999999999999999999999999999998899999999999983
No 55
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.87 E-value=2.1e-21 Score=196.20 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=116.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee
Q 013701 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|+|+.+++|++|+.++++.+...+..+|||+||+| +|+++.++.+....+. ++.
T Consensus 189 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~--~~g 264 (386)
T 3e5n_A 189 DVDTLIAQLGLPLFVKPANQG-SSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAG-REIECAVLGNAVPHAS--VCG 264 (386)
T ss_dssp CHHHHHHHHCSSEEEEESBSC-SSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEECSSSCEEE--EEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-cCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCCC-eEEEEEEEeCCCceEE--EeE
Confidence 677888899999999998766 799999999999999999998777778999999998 9999999976443322 111
Q ss_pred ee-----------EEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013701 88 ET-----------IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 88 e~-----------~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
+. .+..+.....+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|||||||-+
T Consensus 265 ei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t 342 (386)
T 3e5n_A 265 EVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFT 342 (386)
T ss_dssp EECC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEEeCCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCC
Confidence 11 11112223456799999999999999999999999999999999999988999999999999843
No 56
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.87 E-value=4.3e-21 Score=192.36 Aligned_cols=159 Identities=22% Similarity=0.291 Sum_probs=123.5
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee
Q 013701 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|+||.+++|.+|+.++++.+...+..+|||+||+| +|+++.++.+.++.+ .+..
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~~~--~~~~ 237 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLG-SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNA-REIEVAVLGNDYPEA--TWPG 237 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCS-SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCCC-EEEEEEEEESSSCEE--CCCE
T ss_pred HHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCccC-eEEEEEEEcCCCcEE--eeeE
Confidence 567778889999999998765 799999999999999999988766677999999997 999999997654322 1221
Q ss_pred eeE-----------EecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013701 88 ETI-----------HKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 88 e~~-----------~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
+.. +..|. ...+.|+.++++..+++++++.+++++||++|++++||+++++|++||+|+|||+|.+.
T Consensus 238 e~~~~~~~~~~~~k~~~g~-~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~- 315 (364)
T 2i87_A 238 EVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFTA- 315 (364)
T ss_dssp EECCSCCC------------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCST-
T ss_pred EEecCCCcCCHHHcccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEEeCCCCCCc-
Confidence 111 11222 23457888999999999999999999999999999999999889999999999998432
Q ss_pred cceeeccCcHHHHHHHHHhCCCCC
Q 013701 157 HTIESCYTSQFEQHMRAVVGLPLG 180 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l~ 180 (438)
.++|..+.++ +|.++.
T Consensus 316 -------~s~~p~~~~~-~G~~~~ 331 (364)
T 2i87_A 316 -------FSMYPKLWEN-MGLSYP 331 (364)
T ss_dssp -------TSHHHHHHHH-TTCCHH
T ss_pred -------hhHHHHHHHH-hCCCHH
Confidence 3555555543 465543
No 57
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.87 E-value=6.5e-21 Score=189.47 Aligned_cols=153 Identities=24% Similarity=0.361 Sum_probs=122.6
Q ss_pred HhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEE--
Q 013701 14 KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH-- 91 (438)
Q Consensus 14 ~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~-- 91 (438)
+++|||+||||..++ +|+|+.+++|++|+.++++.+...+..+|||+||+| +|+++.++.+.++ +...++.+...
T Consensus 162 ~~~~~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~G-~E~~v~vl~~~~~-~~~~~~~ei~~~~ 238 (343)
T 1e4e_A 162 ATFTYPVFVKPARSG-SSFGVKKVNSADELDYAIESARQYDSKILIEQAVSG-CEVGCAVLGNSAA-LVVGEVDQIRLQY 238 (343)
T ss_dssp GGSCSCEEEEESSCC-TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCCS-EEEEEEEEEETTC-CEECCCEEEEESS
T ss_pred hccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcCC-eEEEEEEEeCCCC-eEEeeeEEEeeCC
Confidence 578999999998765 899999999999999999988766667999999997 9999999987554 44555544321
Q ss_pred ---------e----cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc
Q 013701 92 ---------K----ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT 158 (438)
Q Consensus 92 ---------~----~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~ 158 (438)
. .|. .....|+.++++..+++++++.+++++||++|++++||+++++|++||+|+|+|+|.+.
T Consensus 239 ~~~~~~~k~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~--- 314 (343)
T 1e4e_A 239 GIFRIHQEVEPEKGSEN-AVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTS--- 314 (343)
T ss_dssp SCCCGGGSSSGGGCCSS-EEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCST---
T ss_pred CccCHhhcccccCCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCCc---
Confidence 1 222 33467888999999999999999999999999999999999889999999999998432
Q ss_pred eeeccCcHHHHHHHHHhCCCC
Q 013701 159 IESCYTSQFEQHMRAVVGLPL 179 (438)
Q Consensus 159 ~~~~~~~~~~~~l~~~~G~~l 179 (438)
+++|..+.++ +|.++
T Consensus 315 -----~s~~p~~~~~-~G~~~ 329 (343)
T 1e4e_A 315 -----YSRYPRMMAA-AGISL 329 (343)
T ss_dssp -----TCHHHHHHHH-TTCCH
T ss_pred -----ccHHHHHHHH-hCCCH
Confidence 3555555544 35544
No 58
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.86 E-value=4.8e-21 Score=192.69 Aligned_cols=139 Identities=22% Similarity=0.316 Sum_probs=116.8
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeE
Q 013701 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETI 90 (438)
Q Consensus 11 ~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~ 90 (438)
+..+++|||+||||..++ +|+|+++|+|++||.++++.+...+..+|||+||+| +|+++.++.+.++.+..+++.+..
T Consensus 182 ~~~~~lg~PvvVKP~~gg-ss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~~~ei~ 259 (373)
T 3lwb_A 182 QECERLGLPVFVKPARGG-SSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISG-RELECGVLEMPDGTLEASTLGEIR 259 (373)
T ss_dssp HHHHHHCSCEEEEESBCS-TTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCEE-EEEEEEEEECTTSCEEECCCEEEE
T ss_pred HHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCCC-eEEEEEEEECCCCceEEeeeeEEE
Confidence 346789999999998766 799999999999999999988776677999999997 999999998766544445544432
Q ss_pred Ee-----------------cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 91 HK-----------------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 91 ~~-----------------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
.. .+. .....|+.+++++.+++++++.+++++||++|++++||+++++|+ ||+|||+|||.
T Consensus 260 ~~~~~~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 260 VAGVRGREDSFYDFATKYLDDA-AELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGF 337 (373)
T ss_dssp CCSTTCSEESSSCHHHHHTCTT-CEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCC
T ss_pred ccCCCCccccccchhhcccCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCC
Confidence 21 121 245679999999999999999999999999999999999998888 99999999983
No 59
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.86 E-value=4.8e-21 Score=192.11 Aligned_cols=159 Identities=22% Similarity=0.310 Sum_probs=125.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee
Q 013701 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV 87 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~ 87 (438)
++.++++++|||+||||..++ +|.|+.+++|++|+.++++.+...+..+|||+||+| +|+++.++.+.... ..+..
T Consensus 170 ~~~~~~~~lg~PvvVKP~~gg-ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~G-~E~~v~vl~~~~~~--~~~~~ 245 (364)
T 3i12_A 170 SFAEVESRLGLPLFVKPANQG-SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKG-REIECAVLGNDNPQ--ASTCG 245 (364)
T ss_dssp CHHHHHHHHCSSEEEEETTCC-TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEEESSSCE--EEEEE
T ss_pred hHHHHHHhcCCCEEEEECCCC-CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcCC-eEEEEEEEeCCCce--EeeeE
Confidence 777888899999999998766 789999999999999999887655567999999998 99999999765422 22222
Q ss_pred eeE-----E------ecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013701 88 ETI-----H------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 88 e~~-----~------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
+.. + ..+.....+.|++++++..+++++++.+++++||++|++++||+++++|++||+|+|+|||.+
T Consensus 246 ei~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t-- 323 (364)
T 3i12_A 246 EIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFT-- 323 (364)
T ss_dssp EEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCS--
T ss_pred EEecCCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCC--
Confidence 211 1 122225567899999999999999999999999999999999999988999999999999833
Q ss_pred cceeeccCcHHHHHHHHHhCCCC
Q 013701 157 HTIESCYTSQFEQHMRAVVGLPL 179 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l 179 (438)
..++|..+.++ .|.++
T Consensus 324 ------~~s~~p~~~~a-~G~~~ 339 (364)
T 3i12_A 324 ------NISMYPKLWQA-SGLGY 339 (364)
T ss_dssp ------TTCHHHHHHHT-TTCCH
T ss_pred ------CCCHHHHHHHH-hCcCH
Confidence 33555544443 45544
No 60
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.86 E-value=4.2e-21 Score=188.77 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=113.2
Q ss_pred ccCHHHHHHHH----HhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CceeEEEEEEEec
Q 013701 3 VNDLESAWRAG----KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~----~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~~~ 77 (438)
+++.+++.+++ +++|||+||||..++ +|+|+.+++|++|+.++++.+...+..+||||||+ | +|+++.++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G-~E~~v~vl~~~ 205 (317)
T 4eg0_A 128 VMRGDDYAARATDIVAKLGLPLFVKPASEG-SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEGG-GEYTACIAGDL 205 (317)
T ss_dssp EETTSCHHHHHHHHHHHHCSCEEEEECC------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSS-EEEEEEEETTC
T ss_pred EECchhHHHHHHHHHHhcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCC-cEEEEEEECCc
Confidence 34555666666 889999999998755 89999999999999999998877667899999999 7 99999998653
Q ss_pred CCeEEEEeeeeeEE------ecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCC
Q 013701 78 DKSILCYPVVETIH------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 78 ~G~~~~~~~~e~~~------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
.+.+........++ ..+ ......|+.++++..+++++++.+++++||++|++++||+++++|++||+|+||||
T Consensus 206 ~~~~~~i~~~~~~~~~~~k~~~g-~~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~p 284 (317)
T 4eg0_A 206 DLPLIKIVPAGEFYDYHAKYVAN-DTQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAP 284 (317)
T ss_dssp CCCCEEEEC----------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSC
T ss_pred ccceEEEeeCCceechhhcccCC-CeeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCC
Confidence 33222211111111 111 13346788999999999999999999999999999999999988999999999999
Q ss_pred CCC
Q 013701 152 HNS 154 (438)
Q Consensus 152 ~~~ 154 (438)
|-+
T Consensus 285 g~t 287 (317)
T 4eg0_A 285 GMT 287 (317)
T ss_dssp CCS
T ss_pred CCC
Confidence 843
No 61
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.86 E-value=1.2e-20 Score=187.88 Aligned_cols=156 Identities=25% Similarity=0.356 Sum_probs=123.8
Q ss_pred HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEE
Q 013701 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (438)
Q Consensus 12 ~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~ 91 (438)
+.+++|||+||||..++ +|+|+.+++|++|+.++++.+...+..+|||+||+| +|+++.++.+.+ ....+++.+...
T Consensus 160 ~~~~lg~PvvvKP~~~~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G-~E~~v~vl~~~~-~~~~~~~~e~~~ 236 (346)
T 3se7_A 160 PTDQLTYPVFVKPARSG-SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVIG-TEIGCAVMGNGP-ELITGEVDQITL 236 (346)
T ss_dssp CTTTCCSSEEEEESSCC-TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCCS-EEEEEEEEEETT-EEEECCCEEECC
T ss_pred HHHhcCCCEEEEeCCCC-CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcCC-EEEEEEEEecCC-CeEEEeeEEEec
Confidence 45678999999998765 899999999999999999998777778999999997 999999998654 444555443211
Q ss_pred ---------------ecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCC
Q 013701 92 ---------------KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 92 ---------------~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~ 156 (438)
..+ ......|++++++..+++++++.+++++||++|++++||+++++|++|++|+|+|||.+
T Consensus 237 ~~~~~d~~q~~~~ky~~~-~~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t-- 313 (346)
T 3se7_A 237 SHGFFKIHQESTPESGSD-NSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMT-- 313 (346)
T ss_dssp C--------------CGG-GSCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCS--
T ss_pred CCCCcCcccchhccccCC-CeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCC--
Confidence 111 12345788999999999999999999999999999999999988899999999999833
Q ss_pred cceeeccCcHHHHHHHHHhCCCCC
Q 013701 157 HTIESCYTSQFEQHMRAVVGLPLG 180 (438)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~G~~l~ 180 (438)
..++|..+.+ ++|.++.
T Consensus 314 ------~~s~~p~~~~-~~G~~~~ 330 (346)
T 3se7_A 314 ------SYSRYPRMMT-AAGLSRA 330 (346)
T ss_dssp ------TTCHHHHHHH-HTTCCHH
T ss_pred ------cccHHHHHHH-HhCCCHH
Confidence 3455555554 3565543
No 62
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.86 E-value=1.8e-20 Score=182.45 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=121.7
Q ss_pred HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEE
Q 013701 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIH 91 (438)
Q Consensus 12 ~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~ 91 (438)
++++++||+|+||..++ +|+|++++++.+|+.++++.+......+++|+||+| +|+++.++ +|++ ++..+...
T Consensus 133 ~~~~~~~p~vvKP~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~g-~e~~v~~~---~g~~--~~~~~~~~ 205 (306)
T 1iow_A 133 EISALGLPVIVKPSREG-SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL---GEEI--LPSIRIQP 205 (306)
T ss_dssp HHHTTCSSEEEEETTCC-TTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCCC-CEEEEEEE---TTEE--CCCEEEEC
T ss_pred HHhccCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcCC-EEEEEEEE---CCCc--cceEEEEe
Confidence 77889999999997655 899999999999999999887654567999999997 99999988 2443 33333221
Q ss_pred ecC----------eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcc---
Q 013701 92 KEN----------ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHT--- 158 (438)
Q Consensus 92 ~~g----------~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~--- 158 (438)
..+ .......|..++++..+++++++.+++++||+.|++++||+++++|++||+|+|||+|++.+-.
T Consensus 206 ~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s~~p~ 285 (306)
T 1iow_A 206 SGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPM 285 (306)
T ss_dssp SSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHH
T ss_pred CCCeEchhheecCCCeeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCCCCCCCHHHH
Confidence 111 1133467888999999999999999999999999999999999889999999999998766421
Q ss_pred -eeeccCcHHHHHHHH
Q 013701 159 -IESCYTSQFEQHMRA 173 (438)
Q Consensus 159 -~~~~~~~~~~~~l~~ 173 (438)
...+|+|+.+...+.
T Consensus 286 ~~~~~G~~~~~~~~~~ 301 (306)
T 1iow_A 286 AARQAGMSFSQLVVRI 301 (306)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 224577766665544
No 63
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.85 E-value=1.7e-20 Score=185.06 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=109.7
Q ss_pred CHHHHHHHH--HhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEe-cCCeE
Q 013701 5 DLESAWRAG--KQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSI 81 (438)
Q Consensus 5 s~ee~~~~~--~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~-~~G~~ 81 (438)
+.+++.+++ ++++||+|+||..++ +|+|+++++|++|+.++++. ...+++||||+| +|+++.++.| .+|++
T Consensus 135 ~~~~~~~~~~~~~~~~P~vvKp~~g~-g~~gv~~v~~~~el~~~~~~----~~~~lvee~i~G-~e~~v~~~~d~~~G~~ 208 (331)
T 2pn1_A 135 TMASFEEALAAGEVQLPVFVKPRNGS-ASIEVRRVETVEEVEQLFSK----NTDLIVQELLVG-QELGVDAYVDLISGKV 208 (331)
T ss_dssp SHHHHHHHHHTTSSCSCEEEEESBC----------------------------CEEEEECCCS-EEEEEEEEECTTTCCE
T ss_pred cHHHhhhhhhcccCCCCEEEEeCCCC-CCCCeEEeCCHHHHHHHHHh----CCCeEEEecCCC-cEEEEEEEEecCCCeE
Confidence 567777776 478999999997654 89999999999999988764 235999999998 9999999987 67887
Q ss_pred EEEeeee-eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCccee
Q 013701 82 LCYPVVE-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIE 160 (438)
Q Consensus 82 ~~~~~~e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~ 160 (438)
....+.+ .....|......++ .. +++.+.+.+++++||++|++++||+. .+|++|++|+|||++++.. ...
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~~~~~lg~~G~~~vd~~~-~~g~~~~iEiN~R~~g~~~-~~~ 280 (331)
T 2pn1_A 209 TSIFIKEKLTMRAGETDKSRSV--LR----DDVFELVEHVLDGSGLVGPLDFDLFD-VAGTLYLSEINPRFGGGYP-HAY 280 (331)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE--CC----HHHHHHHHHHHTTTCCCEEEEEEEEE-ETTEEEEEEEESSCCTTHH-HHH
T ss_pred EEEEEEEEEEecCCceeEeEEe--cc----HHHHHHHHHHHHHhCCcceEEEEEEE-cCCCEEEEEEeCCCCCchH-HHH
Confidence 6433333 23345554332222 22 46788999999999999999999996 4688999999999987654 355
Q ss_pred eccCcHHHHHHHHHhCCCCCC
Q 013701 161 SCYTSQFEQHMRAVVGLPLGD 181 (438)
Q Consensus 161 ~~~~~~~~~~l~~~~G~~l~~ 181 (438)
.+|+|+++.+++.++|.+++.
T Consensus 281 ~~G~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 281 ECGVNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp HTTCCHHHHHHHHHTTCCCCC
T ss_pred HcCCCHHHHHHHHHcCCCCCc
Confidence 679999999999999998875
No 64
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.85 E-value=6.6e-21 Score=191.21 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=113.6
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEE-EEEEEecCCeEEEEee
Q 013701 8 SAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELA-VIVVRGRDKSILCYPV 86 (438)
Q Consensus 8 e~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~s-v~~~~~~~G~~~~~~~ 86 (438)
++.+ ++++|||+||||..++ +|.|+.+++|++||.++++.+...+..+|||+||+|.+|++ +.+.. +|++...++
T Consensus 177 ~~~~-~~~lg~PvvVKP~~g~-ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~~~ 252 (367)
T 2pvp_A 177 NALD-LMNFNFPFIVKPSNAG-SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGCKI--KKDFCFSYI 252 (367)
T ss_dssp GHHH-HCCSCSCEEEEESSCC-TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTTCEEEEEEEEEE--TTEEEEEEE
T ss_pred HHHH-HhccCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCCCceeeEEEEEE--CCEEEEEEE
Confidence 5666 7789999999998766 89999999999999999998876666799999999768977 43433 567554443
Q ss_pred eeeE-----Ee------cCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCC
Q 013701 87 VETI-----HK------ENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSG 155 (438)
Q Consensus 87 ~e~~-----~~------~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~ 155 (438)
+.. +. .|. ...+.|+.++++..+++++++.+++++||+.|++++||+++ +|++||+|+|||+|.+.
T Consensus 253 -ei~~~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~ 329 (367)
T 2pvp_A 253 -EEPNKQEFLDFKQKYLDFS-RNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLA 329 (367)
T ss_dssp -EETTTTEEECCCCSSCCSC-CCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGG
T ss_pred -EEecCCceEcccccccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCc
Confidence 321 11 111 12356888999999999999999999999999999999998 88999999999998543
No 65
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.85 E-value=3.2e-20 Score=183.03 Aligned_cols=153 Identities=24% Similarity=0.230 Sum_probs=118.8
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeee----e-
Q 013701 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVE----T- 89 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e----~- 89 (438)
++|||+||||..++ +|+|+.+++|++|+.++++.+...+..+|||+||+|.+|+++.++.+.++.+....-.. .
T Consensus 148 ~~g~PvvvKP~~g~-~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~ 226 (322)
T 2fb9_A 148 PFDPPFFVKPANTG-SSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFY 226 (322)
T ss_dssp CSCSCEEEEETTCC-TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEECCEE
T ss_pred ccCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeCCCcc
Confidence 68999999998765 79999999999999999998876667899999999768999999876543322111000 0
Q ss_pred ----EEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeeccCc
Q 013701 90 ----IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTS 165 (438)
Q Consensus 90 ----~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~~~ 165 (438)
.+..|. ...+.|+.++++..+++++++.+++++||++|++++||+++ +|++||+|+|+|+|.+. ++
T Consensus 227 ~~~~k~~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~--------~s 296 (322)
T 2fb9_A 227 DYETKYTPGR-AELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFTP--------TS 296 (322)
T ss_dssp ETTTEEECCE-EEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCSS--------SC
T ss_pred CHHHcccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCCc--------cc
Confidence 122232 34568999999999999999999999999999999999999 89999999999998433 35
Q ss_pred HHHHHHHHHhCCCC
Q 013701 166 QFEQHMRAVVGLPL 179 (438)
Q Consensus 166 ~~~~~l~~~~G~~l 179 (438)
+|..+.++ +|.++
T Consensus 297 ~~p~~~~~-~G~~~ 309 (322)
T 2fb9_A 297 MYPRLFEA-GGVAY 309 (322)
T ss_dssp HHHHHHHH-TTCCH
T ss_pred HHHHHHHH-hCCCH
Confidence 55555543 45543
No 66
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.82 E-value=8.3e-20 Score=178.28 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=108.4
Q ss_pred cCHHHHHH-HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013701 4 NDLESAWR-AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 4 ~s~ee~~~-~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~ 82 (438)
++.+++.+ +++++|||+||||..++ +|+|+.+++|.+|+.++++.+......++|||||+| +|+++.++ +|++.
T Consensus 119 ~~~~~~~~~~~~~~~~P~vvKP~~~~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~G-~e~~v~v~---~g~~~ 193 (307)
T 3r5x_A 119 TKMEDLNFDELDKLGFPLVVKPNSGG-SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKG-EEITCSIF---DGKQL 193 (307)
T ss_dssp ESSSCCCHHHHHHHCSSEEEEECC-----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEE---TTEEC
T ss_pred eChhhhhHHHHHhcCCCEEEEeCCCC-CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcCC-EEEEEEEE---CCEEe
Confidence 34444443 77889999999997654 899999999999999999887654566999999997 99999986 23431
Q ss_pred E----Eeeee--e---EE-ecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013701 83 C----YPVVE--T---IH-KENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 83 ~----~~~~e--~---~~-~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
. .+..+ . .+ ..| .. ..|.+++++..+++++++.+++++||++|++++||+++ +|++||+|+|||+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g--~~-~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg 269 (307)
T 3r5x_A 194 PIISIRHAAEFFDYNAKYDDAS--TI-EEVIELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPG 269 (307)
T ss_dssp CCEEEEEEEEEETTEEEEEEEE--EE-EEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCC
T ss_pred eEEEEEcCCcccChhhcCCCCC--Ce-EecCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCC
Confidence 1 11111 0 01 111 12 22888999999999999999999999999999999998 68899999999998
Q ss_pred CCCC
Q 013701 153 NSGH 156 (438)
Q Consensus 153 ~~~~ 156 (438)
.+.+
T Consensus 270 ~~~~ 273 (307)
T 3r5x_A 270 MTQA 273 (307)
T ss_dssp CSTT
T ss_pred CCcc
Confidence 5543
No 67
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.78 E-value=3.1e-19 Score=171.22 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=113.6
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHh--cCC--CCcEEEeeccCC-ceeEEEEEEEec
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITAL--GGF--DRGLYVEKWAPF-VKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~--~~~--~~~~lvEe~I~g-~~E~sv~~~~~~ 77 (438)
+++.+++.++++++|||+|+||..++ +|+|++++++.+|+.++++.+ ... ...+++|+||+| +.|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~p~vvKp~~g~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~--- 184 (280)
T 1uc8_A 109 ATDREEALRLMEAFGYPVVLKPVIGS-WGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV--- 184 (280)
T ss_dssp ESSHHHHHHHHHHHCSSEEEECSBCC-BCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEE---
T ss_pred eCCHHHHHHHHHHhCCCEEEEECCCC-CcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEE---
Confidence 56889999999999999999997655 899999999999999988765 221 356999999997 578888776
Q ss_pred CCeEEEEeeeeeE---EecC-eeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCC
Q 013701 78 DKSILCYPVVETI---HKEN-ICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHN 153 (438)
Q Consensus 78 ~G~~~~~~~~e~~---~~~g-~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~ 153 (438)
+|++.. ..... .... .......|..+++ ++++++.+++++||+ |.+++||+++++| +||+|+|||+|.
T Consensus 185 ~~~~~~--~~~~~~~~~~~~~~~g~~~~p~~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~ 256 (280)
T 1uc8_A 185 GERAIA--AIYRRSAHWITNTARGGQAENCPLTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEF 256 (280)
T ss_dssp TTEEEE--EEEC--------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCC
T ss_pred CCEEEE--EEEEecCCccccccCCccccCCCCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCc
Confidence 345432 11111 1100 0011234666665 688999999999999 9999999999876 999999999975
Q ss_pred CCCcceeeccCcHHHHHHHHHhCC
Q 013701 154 SGHHTIESCYTSQFEQHMRAVVGL 177 (438)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~G~ 177 (438)
+. ....+|+|+.+.+++.++|.
T Consensus 257 ~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 257 KN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp TT--HHHHHCCCHHHHHHHHHHHT
T ss_pred cc--hheeeccCHHHHHHHHHHhh
Confidence 43 34567999999999888764
No 68
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.77 E-value=4.8e-18 Score=166.22 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=106.1
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeeeeeEEecC
Q 013701 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKEN 94 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~e~~~~~g 94 (438)
+++||+|+||..++ +|+|++++++ ....+++|+||+| +|+++.++.+ +.+.............
T Consensus 131 ~~~~P~vvKP~~g~-gs~Gv~~v~~-------------~~~~~lvEe~I~G-~e~sv~v~~g--~~~~~~~~~~~~~~~~ 193 (305)
T 3df7_A 131 PLDCKFIIKPRTAC-AGEGIGFSDE-------------VPDGHIAQEFIEG-INLSVSLAVG--EDVKCLSVNEQIINNF 193 (305)
T ss_dssp CCSSSEEEEESSCC-----CBCCSS-------------CCTTEEEEECCCS-EEEEEEEEES--SSEEEEEEEEEEEETT
T ss_pred cCCCCEEEEeCCCC-CCCCEEEEec-------------CCCCEEEEeccCC-cEEEEEEEeC--CeEEEEEEeeEeccCc
Confidence 56899999997654 8999999998 2345999999997 9999999973 2443333222222222
Q ss_pred eeeEEEcCCCCCHHHHHHHHHHHHHHHHHc-CceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeeccCcHHHHHHHH
Q 013701 95 ICHIVKAPAAVPWKISELATDVAHKAVSSL-EGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRA 173 (438)
Q Consensus 95 ~~~~~~~P~~l~~~~~~~i~~~a~~i~~~l-g~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~~~~~~~~l~~ 173 (438)
.......|+.++++..+++++++.+++++| |++|++++||+++ |++|++|||||++++......++|+|+.+.+++.
T Consensus 194 ~~~g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 194 RYAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC
T ss_pred eeccccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc
Confidence 233446788899999999999999999999 9999999999995 6799999999999765444456799999888776
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.76 E-value=2.9e-18 Score=171.16 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=104.0
Q ss_pred hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC-----C--CcEEEeeccCCceeEEEEEEEe-cCCeEEEEeee
Q 013701 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----D--RGLYVEKWAPFVKELAVIVVRG-RDKSILCYPVV 87 (438)
Q Consensus 16 igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~-----~--~~~lvEe~I~g~~E~sv~~~~~-~~G~~~~~~~~ 87 (438)
++||+||||..++ +|+|+++++|++|+.++++.+... . ..++|||||+| .|+++..+.. .++++..+.+.
T Consensus 149 ~~~PvVVK~~~~a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id 226 (361)
T 2r7k_A 149 IDGTVIVKFPGAR-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMD 226 (361)
T ss_dssp CCSCEEEECSCCC-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCEEEeeCCCC-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEec
Confidence 3799999997665 999999999999999999776211 1 45999999998 8888555543 24455555554
Q ss_pred eeEEe--cCeee--------------EEEc---CCCCCHHHHHHHHHHHHHHHHHc------CceeEEEEEEEEeCCCcE
Q 013701 88 ETIHK--ENICH--------------IVKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQI 142 (438)
Q Consensus 88 e~~~~--~g~~~--------------~~~~---P~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~~ 142 (438)
..++. +|.+. .++. |+.+++++++++.+++.++++++ ++.|++++|||++++|++
T Consensus 227 ~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i 306 (361)
T 2r7k_A 227 KRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLEL 306 (361)
T ss_dssp EEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCE
T ss_pred ceEEeecccceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCE
Confidence 44222 22221 4444 88999999999999999999999 889999999999988899
Q ss_pred EEEEEcCCCCCC
Q 013701 143 LLNEVAPRPHNS 154 (438)
Q Consensus 143 ~viEiNpR~~~~ 154 (438)
||+|+|||++++
T Consensus 307 ~V~EIapR~gGg 318 (361)
T 2r7k_A 307 VVFEMSARVDGG 318 (361)
T ss_dssp EEEEEESSBCGG
T ss_pred EEEEEcCCCCCC
Confidence 999999999854
No 70
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.75 E-value=2.2e-17 Score=162.48 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=99.8
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCC-----CCcEEEeeccCCceeEEEEEEEec-CCeEEEEeeee
Q 013701 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGF-----DRGLYVEKWAPFVKELAVIVVRGR-DKSILCYPVVE 88 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~-----~~~~lvEe~I~g~~E~sv~~~~~~-~G~~~~~~~~e 88 (438)
+++||+||||..++ +|+|+++++|++|+.++++.+... ...++|||||+| .|+++.++.+. ++++..+....
T Consensus 124 ~l~~P~vvKP~~g~-~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g 201 (334)
T 2r85_A 124 DIEKPVIVKPHGAK-GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDR 201 (334)
T ss_dssp GCCSCEEEEECC-----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEE
T ss_pred HcCCCEEEEeCCCC-CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeecc
Confidence 46799999997655 899999999999999998877422 256999999998 88886665542 22222221111
Q ss_pred eE--EecCe--------------eeEEEc---CCCCCHHHHHHHHHHHHHHHHHc-----CceeEEEEEEEEeCCCcEEE
Q 013701 89 TI--HKENI--------------CHIVKA---PAAVPWKISELATDVAHKAVSSL-----EGAGIFAVELFWTNNGQILL 144 (438)
Q Consensus 89 ~~--~~~g~--------------~~~~~~---P~~l~~~~~~~i~~~a~~i~~~l-----g~~G~~~ve~~~~~~g~~~v 144 (438)
.. ..++. ...... |..++++..+++++++.+++++| ++.|++++||+++++|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~v 281 (334)
T 2r85_A 202 RYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVV 281 (334)
T ss_dssp EEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEE
T ss_pred EEEeccCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEE
Confidence 11 00000 012222 78899889999999999999999 88999999999998889999
Q ss_pred EEEcCCCCCC
Q 013701 145 NEVAPRPHNS 154 (438)
Q Consensus 145 iEiNpR~~~~ 154 (438)
+|+|||++++
T Consensus 282 iEiN~R~g~~ 291 (334)
T 2r85_A 282 FEISARIVAG 291 (334)
T ss_dssp EEEECSCCGG
T ss_pred EEEeCCcCCC
Confidence 9999999853
No 71
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.63 E-value=1.2e-16 Score=156.72 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=89.0
Q ss_pred hhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEe-cCCeEEEEeeeeeEE-e
Q 013701 15 QFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRG-RDKSILCYPVVETIH-K 92 (438)
Q Consensus 15 ~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~-~~G~~~~~~~~e~~~-~ 92 (438)
+++|||||||..++ +|+|+++++| +|+..+++.+. ..++|||||+| .+++..++.+ .+|++..+.+...+. .
T Consensus 123 ~i~~PviVKp~~g~-ggkG~~~v~~-eel~~~~~~~~---~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~ 196 (320)
T 2pbz_A 123 KPDELYFVRIEGPR-GGSGHFIVEG-SELEERLSTLE---EPYRVERFIPG-VYLYVHFFYSPILERLELLGVDERVLIA 196 (320)
T ss_dssp CSSCCEEEECC-------------C-EECSCCCC-------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred CcCCcEEEEECCCC-CCCCEEEECh-HHHHHHHHhcC---CCEEEEeeece-EecceeEEeccccCceeEEEecceEEEE
Confidence 46999999997655 9999999999 99987665442 35999999998 6667655554 356666555543332 2
Q ss_pred cCeeeE-------EEc---CCCCCHHHHHHHHHHHHHHHHHc------CceeEEEEEEEEeCCCcEEEEEEcCCCCCC
Q 013701 93 ENICHI-------VKA---PAAVPWKISELATDVAHKAVSSL------EGAGIFAVELFWTNNGQILLNEVAPRPHNS 154 (438)
Q Consensus 93 ~g~~~~-------~~~---P~~l~~~~~~~i~~~a~~i~~~l------g~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 154 (438)
+|.+.. ++. |+.+++++++++.+++.+++++| ++.|++++| +++||++||+|+|||++++
T Consensus 197 ~g~~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 197 DGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRIDGG 272 (320)
T ss_dssp CSSSSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBCSG
T ss_pred CCeeecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCCCC
Confidence 343311 233 78888889999999999999999 999999999 5778889999999998754
No 72
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.52 E-value=3.7e-15 Score=140.42 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=109.1
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCC-----CCCCcCcEE-eCCHHHHHHHHHHhcCC---------CCcEEEeeccCCc
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRL-----AYDGRGNAV-AKSEEELSSAITALGGF---------DRGLYVEKWAPFV 66 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~-----g~~g~Gv~i-v~~~eel~~~~~~~~~~---------~~~~lvEe~I~g~ 66 (438)
.+++.+|+.++++++|||+||||... + +|.|+.+ ++|++|+.++++.+... ...++||+|++++
T Consensus 41 ~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~-~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g 119 (238)
T 1wr2_A 41 LAKTLDEALEYAKEIGYPVVLKLMSPQILHKS-DAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPG 119 (238)
T ss_dssp EESSHHHHHHHHHHHCSSEEEEEECTTCCCHH-HHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCC
T ss_pred EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCC-ccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCC
Confidence 35789999999999999999999865 3 5678998 79999999998876421 2569999999977
Q ss_pred eeEEEEEEEec-CCeEEEEeeeee-EEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEE----------
Q 013701 67 KELAVIVVRGR-DKSILCYPVVET-IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVEL---------- 134 (438)
Q Consensus 67 ~E~sv~~~~~~-~G~~~~~~~~e~-~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~---------- 134 (438)
+|+.+.++.|. .|.+..++.... ++...+.....+| ++++..+++.+.+.+....+|++|...+++
T Consensus 120 ~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~P--l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l 197 (238)
T 1wr2_A 120 REVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVP--ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKV 197 (238)
T ss_dssp EEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESS--CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCC--CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 99999999887 566655553110 1111233444555 899999999999999999999999644442
Q ss_pred --EEeCCCc-EEEEEEcCCCC
Q 013701 135 --FWTNNGQ-ILLNEVAPRPH 152 (438)
Q Consensus 135 --~~~~~g~-~~viEiNpR~~ 152 (438)
++.+.++ ++++||||++-
T Consensus 198 ~~~~~~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 198 SKLVDDLKDYIKEMDLNPVFV 218 (238)
T ss_dssp HHHHHHTTTTEEEEEEEEEEE
T ss_pred HHHHHcCCCCeEEEeccCeEE
Confidence 1223344 99999999974
No 73
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.49 E-value=2.1e-13 Score=132.54 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=103.1
Q ss_pred ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeC-CHHHHHHHHHHhcCC-CCcEEEeeccCC--ceeEEEEEEEecC
Q 013701 3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAK-SEEELSSAITALGGF-DRGLYVEKWAPF--VKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~-~~eel~~~~~~~~~~-~~~~lvEe~I~g--~~E~sv~~~~~~~ 78 (438)
+++.+++.++++++| |+|+||..+ ++|+|+++++ +.+++..+++.+... ...+++|+||+| ..|+++.++ +
T Consensus 141 ~~~~~~~~~~~~~~~-p~vvKP~~g-~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~---~ 215 (316)
T 1gsa_A 141 TRNKAQLKAFWEKHS-DIILKPLDG-MGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVV---D 215 (316)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSC-CTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEE---T
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCC-CCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEE---C
Confidence 568899999999999 999999765 4899999998 999999888776532 256999999997 456666554 4
Q ss_pred CeEEEEeeeeeEEecCe------eeEEEcCCCCCHHHHHHHHHHHHHHHHH---cCceeEEEEEEEEeCCCcEEEEEEcC
Q 013701 79 KSILCYPVVETIHKENI------CHIVKAPAAVPWKISELATDVAHKAVSS---LEGAGIFAVELFWTNNGQILLNEVAP 149 (438)
Q Consensus 79 G~~~~~~~~e~~~~~g~------~~~~~~P~~l~~~~~~~i~~~a~~i~~~---lg~~G~~~ve~~~~~~g~~~viEiNp 149 (438)
|++..+.+. .....++ ......|..++++ +++++.+++++ +|+ +.+.+||+ |. ||+|+|+
T Consensus 216 g~~~~~~~~-r~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~ 284 (316)
T 1gsa_A 216 GEPVPYCLA-RIPQGGETRGNLAAGGRGEPRPLTES----DWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINV 284 (316)
T ss_dssp TEECSEEEE-EECCSSCSCCCGGGTCEEEEEECCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEEC
T ss_pred CEEeeeEEE-EeCCCCCceeEEccCCccccCCCCHH----HHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcC
Confidence 565432221 1100010 0011235556654 44555555554 565 67889987 54 8999999
Q ss_pred CCCCCCCcceeeccCcHHHHHHHHHh
Q 013701 150 RPHNSGHHTIESCYTSQFEQHMRAVV 175 (438)
Q Consensus 150 R~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (438)
|.+.+.......+|.|+.+..++.+.
T Consensus 285 r~~~~~~~~~~~~g~~~~~~~~~~~~ 310 (316)
T 1gsa_A 285 TSPTCIREIEAEFPVSITGMLMDAIE 310 (316)
T ss_dssp SSCCCHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCcchHHHHHhhCcCHHHHHHHHHH
Confidence 85312222234568888777666544
No 74
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.41 E-value=4.9e-13 Score=131.09 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=95.1
Q ss_pred ccCHHHHHHHHHhh--CCcEEEEecCCCCCC---cCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCC-ceeEEEEEEEe
Q 013701 3 VNDLESAWRAGKQF--GYPLMVKSKRLAYDG---RGNAVAKSEEELSSAITALGGFDRGLYVEKWAPF-VKELAVIVVRG 76 (438)
Q Consensus 3 v~s~ee~~~~~~~i--gyPvVvKP~~~g~~g---~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g-~~E~sv~~~~~ 76 (438)
+++.+++.+++++. +||+|+||.. |++| +|+.++++.+++.. ....+++|+||++ +.|+++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~P~vvKP~~-g~g~~~s~gv~~v~~~~~l~~-------~~~~~lvqe~i~~~g~~~~v~v~-- 188 (324)
T 1z2n_X 119 VKSKEEVIQLLQSKQLILPFIVKPEN-AQGTFNAHQMKIVLEQEGIDD-------IHFPCLCQHYINHNNKIVKVFCI-- 188 (324)
T ss_dssp ESSHHHHHHHHHTTCSCSSEEEEESB-CSSSSGGGEEEEECSGGGGTT-------CCSSEEEEECCCCTTCEEEEEEE--
T ss_pred eCCHHHHHHHHHHcCCCCCEEEeeCC-CCCCccceeeEEEeCHHHHhh-------cCCCEEEEEccCCCCcEEEEEEE--
Confidence 56788888888875 4999999976 4578 99999999988753 2345999999985 478888765
Q ss_pred cCCeEEEEeeee--eE---------Eec------------------------Cee----e-EEEcCCCCCHHHHHHHHHH
Q 013701 77 RDKSILCYPVVE--TI---------HKE------------------------NIC----H-IVKAPAAVPWKISELATDV 116 (438)
Q Consensus 77 ~~G~~~~~~~~e--~~---------~~~------------------------g~~----~-~~~~P~~l~~~~~~~i~~~ 116 (438)
+|++....... +. ..+ +.. . ....|..+++ ++++++
T Consensus 189 -g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~ 264 (324)
T 1z2n_X 189 -GNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSE---AEMRDL 264 (324)
T ss_dssp -TTEEEEEEECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCH---HHHHHH
T ss_pred -CCEEEEEEecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccCCCH---HHHHHH
Confidence 23443221100 00 000 000 0 0001222331 578999
Q ss_pred HHHHHHHcCceeEEEEEEEEe-CCCcEEEEEEcCCCCCCCC
Q 013701 117 AHKAVSSLEGAGIFAVELFWT-NNGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 117 a~~i~~~lg~~G~~~ve~~~~-~~g~~~viEiNpR~~~~~~ 156 (438)
+.+++++||+. .+++||+++ ++|++||+|||||||.++.
T Consensus 265 a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~ 304 (324)
T 1z2n_X 265 AYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYGGK 304 (324)
T ss_dssp HHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTTSC
T ss_pred HHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcCCC
Confidence 99999999996 889999998 4588999999999985543
No 75
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.41 E-value=2e-13 Score=147.83 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=110.7
Q ss_pred ccCHHHHHHHH-HhhCCcEEEEecCCCCCCcCcEEeC---CHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecC
Q 013701 3 VNDLESAWRAG-KQFGYPLMVKSKRLAYDGRGNAVAK---SEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRD 78 (438)
Q Consensus 3 v~s~ee~~~~~-~~igyPvVvKP~~~g~~g~Gv~iv~---~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~ 78 (438)
+++.+++.+++ +.+|||+||||..++ +|+||.+++ +.+|+.++++.+......++|||||+| +|+++.++.
T Consensus 505 ~~~~~ea~~~~~~~~g~PvVVKP~~G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~G-~E~~v~Vvg--- 579 (750)
T 3ln6_A 505 FTDRKEALNYFSQIQDKPIVVKPKSTN-FGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIEG-TEYRFFVLE--- 579 (750)
T ss_dssp EETTTTHHHHHHHSSSSCEEEEETTCC-SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCCS-EEEEEEEET---
T ss_pred ECCHHHHHHHHHHhcCCcEEEEeCCCC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccCC-CEEEEEEEC---
Confidence 56778888877 778999999997655 899999999 999999999876544566999999997 999999873
Q ss_pred CeEEEE--eeeeeEEecCee--------------eE----------------------------EEc-------------
Q 013701 79 KSILCY--PVVETIHKENIC--------------HI----------------------------VKA------------- 101 (438)
Q Consensus 79 G~~~~~--~~~e~~~~~g~~--------------~~----------------------------~~~------------- 101 (438)
|+++.. -...++..+|.. .+ +++
T Consensus 580 g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~N 659 (750)
T 3ln6_A 580 GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSN 659 (750)
T ss_dssp TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCC
T ss_pred CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeeccc
Confidence 343211 000011000000 00 000
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC--------CCcEEEEEEcCCCCCCCCc-ceeeccCcH
Q 013701 102 ------PAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPHNSGHH-TIESCYTSQ 166 (438)
Q Consensus 102 ------P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~--------~g~~~viEiNpR~~~~~~~-~~~~~~~~~ 166 (438)
..+.++++..+++++|.++++++|+. +++||++..+ .|.++|+|+|++||-.+|. ...+.+.+.
T Consensus 660 ls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~~v 738 (750)
T 3ln6_A 660 ISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYMHTYCQEGPGQSI 738 (750)
T ss_dssp TTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHHHHSCSBSCCCCC
T ss_pred ccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCcchhhhcCcccCCCCcH
Confidence 00123445567888999999999874 8889999864 3467999999999844442 233445555
Q ss_pred HHHHHHH
Q 013701 167 FEQHMRA 173 (438)
Q Consensus 167 ~~~~l~~ 173 (438)
-...+..
T Consensus 739 ~~~ii~~ 745 (750)
T 3ln6_A 739 TPRILAK 745 (750)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 76
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.39 E-value=6.5e-13 Score=143.61 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=101.2
Q ss_pred ccCHHHHHHHH-HhhCCcEEEEecCCCCCCcCcEEe----CCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEec
Q 013701 3 VNDLESAWRAG-KQFGYPLMVKSKRLAYDGRGNAVA----KSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGR 77 (438)
Q Consensus 3 v~s~ee~~~~~-~~igyPvVvKP~~~g~~g~Gv~iv----~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~ 77 (438)
+++.+++.+++ +++|||+||||..++ +|+||.++ +|.+|+.++++.+...+..++|||||+| +|+++.++.
T Consensus 510 ~~~~~ea~~~~~~~~g~PvVVKP~~g~-~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~G-~Ei~v~Vlg-- 585 (757)
T 3ln7_A 510 FTSLEKAVASYALFENRAVVIKPKSTN-YGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVG-TEYRFFVLG-- 585 (757)
T ss_dssp ESCHHHHHHGGGGSSSSCEEEEESSCS-TTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCCS-EEEEEEEET--
T ss_pred ECCHHHHHHHHHHhcCCCEEEEeCCCC-CCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCC-cEEEEEEEC--
Confidence 57888987777 789999999997655 89999999 8999999999876543456999999998 999999873
Q ss_pred CCeEEEEe-e-eeeEEec----------------------------------------------------Cee-----eE
Q 013701 78 DKSILCYP-V-VETIHKE----------------------------------------------------NIC-----HI 98 (438)
Q Consensus 78 ~G~~~~~~-~-~e~~~~~----------------------------------------------------g~~-----~~ 98 (438)
|+++..- . ..++.-+ |.. ..
T Consensus 586 -gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~ 664 (757)
T 3ln7_A 586 -DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANS 664 (757)
T ss_dssp -TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSC
T ss_pred -CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeeccc
Confidence 3543210 0 0000000 000 00
Q ss_pred EE----cCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC--------CCcEEEEEEcCCCC
Q 013701 99 VK----APAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTN--------NGQILLNEVAPRPH 152 (438)
Q Consensus 99 ~~----~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~--------~g~~~viEiNpR~~ 152 (438)
.. .....++++..+++++|.++++++|+ .++.||++..+ ++.+.|+|+|.+|+
T Consensus 665 Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl-~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~ 729 (757)
T 3ln7_A 665 NISTGGDSIDMTDEMHESYKQLAVGITKAMGA-AVCGVDLIIPDLKQPATPNLTSWGVIEANFNPM 729 (757)
T ss_dssp CGGGTCCEEECTTTSCHHHHHHHHHHHHHHTC-SEEEEEEEESCSSSCCCSSTTTCEEEEEESSCC
T ss_pred ccccCccceeccccCCHHHHHHHHHHHHHhCC-CEEEEEEEecCccccccccCCCeEEEEEcCCcc
Confidence 00 00113344556788899999999987 58899999862 24678999999998
No 77
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.35 E-value=1.7e-13 Score=118.80 Aligned_cols=121 Identities=14% Similarity=0.030 Sum_probs=97.1
Q ss_pred EEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHH
Q 013701 240 TIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYAS 319 (438)
Q Consensus 240 i~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~ 319 (438)
|++|+|+++|+.|++.+... .. |+.+ | ++|.+++|++.+.+.++.|.++||++.+| .+ |.+|+
T Consensus 1 mg~~~~~~~A~~Ka~~aag~-~l-----P~~g-v-liSv~d~dK~~l~~~a~~l~~lGf~i~AT----~G----Ta~~L- 63 (143)
T 2yvq_A 1 GSSGSSGHTAFLKAMLSTGF-KI-----PQKG-I-LIGIQQSFRPRFLGVAEQLHNEGFKLFAT----EA----TSDWL- 63 (143)
T ss_dssp ----CCCCHHHHHHHTSCSC-CC-----CCSE-E-EEECCGGGHHHHHHHHHHHHTTTCEEEEE----HH----HHHHH-
T ss_pred CCCcCCHHHHHHHHHHhcCC-CC-----CCCC-E-EEEecccchHHHHHHHHHHHHCCCEEEEC----ch----HHHHH-
Confidence 57899999999999987752 21 2345 4 88889999999999999999999999999 77 88999
Q ss_pred HHhhcCCeEEEEEc---CCC----CCchhhhhcCCCCCEEEecCCC--CCCCChhhHHHhhcCCCCCceEE
Q 013701 320 SAHERGIEIIIAGA---GGA----AHLPGMVAARTPLPVIGVPVRA--SALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 320 ~~~~~g~~v~i~~a---g~~----~~l~~~i~~~~~~pVI~~p~~~--~~~~g~~~l~s~~~~~~gip~~t 381 (438)
++.|++|..+.+ |+. +++.++|+.+....|||+|.+. ...||+. +|+.++..||||.|
T Consensus 64 --~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~--iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 64 --NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYV--IRRTAVDSGIPLLT 130 (143)
T ss_dssp --HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHH--HHHHHHHTTCCEEC
T ss_pred --HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCccHHH--HHHHHHHhCCCeEc
Confidence 557999999877 435 8999999999999999999752 2235555 99999999999995
No 78
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.30 E-value=6.6e-12 Score=122.15 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=94.8
Q ss_pred HHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee--e
Q 013701 11 RAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV--E 88 (438)
Q Consensus 11 ~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~--e 88 (438)
+.++..|||+|+||.. |+.|+||.+++|+++++..++.+......+++||||+.++.+.+.++ +|++..+-.. +
T Consensus 146 ~~~~~~g~PvVvK~~~-Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~Vv---Gg~v~a~~Rr~~~ 221 (309)
T 1i7n_A 146 EMLTLPTFPVVVKIGH-AHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKI---GNNYKAYMRTSIS 221 (309)
T ss_dssp GGSSCCCSSEEEEESS-CSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEESSC
T ss_pred hhhhccCCCEEEEeCC-CCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecCCCceEEEEEE---CCEEEEEEEEcCC
Confidence 3456689999999976 56999999999999998888754322244899999996677777776 3466432211 0
Q ss_pred eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcC--CCCC
Q 013701 89 TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHN 153 (438)
Q Consensus 89 ~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~~ 153 (438)
..++.+.......+.+++++ .++++.++.++++.-+++.||++.+++|.+||+|+|. .|+-
T Consensus 222 g~wrtN~~~~~~e~~~l~~e----~~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~ 284 (309)
T 1i7n_A 222 GNWKTNTGSAMLEQIAMSDR----YKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLI 284 (309)
T ss_dssp TTTSCSCCCSSEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred CCCeecCCcceeeecCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCc
Confidence 00111111111234456664 6788888889995458999999998889899999999 7763
No 79
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.29 E-value=1.9e-11 Score=122.56 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=95.5
Q ss_pred HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee--ee
Q 013701 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV--ET 89 (438)
Q Consensus 12 ~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~--e~ 89 (438)
+++..|||+|+||.. |+.|+||.+++|+++++..++.+......+++||||+.++.+.+.++ +|++..+-.. +.
T Consensus 259 ~i~~~g~PvVvKp~~-GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~~g~DIRv~VV---Gg~vva~~Rr~~~g 334 (422)
T 1pk8_A 259 MLSSTTYPVVVKMGH-AHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKI---GQNYKAYMRTSVSG 334 (422)
T ss_dssp CCCCSSSSEEEEESS-CCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCC-CCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecCCCceEEEEEE---CCEEEEEEEEcCCC
Confidence 445689999999976 56999999999999999888764322244899999996677777776 3466432221 11
Q ss_pred EEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcC--CCC
Q 013701 90 IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPH 152 (438)
Q Consensus 90 ~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~ 152 (438)
.++.+.......+.+++++ .++++.++.++++.-+++.||++.+++|.+||+|+|. .++
T Consensus 335 ~WrtNvg~g~~e~i~lt~e----~~elA~kAaka~gGldiaGVDlL~s~dG~~~VlEVN~s~~P~ 395 (422)
T 1pk8_A 335 NWKTNTGSAMLEQIAMSDR----YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPL 395 (422)
T ss_dssp CSSTTSSCEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCC
T ss_pred CceeccCceeeeeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCC
Confidence 1121222233345566764 6788888999994358999999999889899999999 765
No 80
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.27 E-value=1.8e-11 Score=120.60 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=102.1
Q ss_pred HHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEEEEeee--ee
Q 013701 12 AGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVV--ET 89 (438)
Q Consensus 12 ~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~~~~~~--e~ 89 (438)
..+.+|||+|+||.. |+.|+||.+++|+++++..++.+......+++||||+.++.+.+.++ +|++..+-.. +.
T Consensus 164 ~~~~~g~PvVvK~~~-Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VV---Gg~vva~~R~~~~g 239 (344)
T 2p0a_A 164 MVTAPHFPVVVKLGH-AHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDSKYDIRIQKI---GSNYKAYMRTSISG 239 (344)
T ss_dssp CCCCSSSSEEEEESS-CCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCEEEEEEEEEE---TTEEEEEEEEESSS
T ss_pred hhhccCCCEEEEeCC-CCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccCCCccEEEEEE---CCEEEEEEEecCCC
Confidence 455689999999976 56999999999999999877654322244889999996677777776 3466433211 11
Q ss_pred EEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcC--CCCCCCCcceeeccCcHH
Q 013701 90 IHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAP--RPHNSGHHTIESCYTSQF 167 (438)
Q Consensus 90 ~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNp--R~~~~~~~~~~~~~~~~~ 167 (438)
.++.+.......+.+++++ .++++.++.++++.-+++.||++.+++|.+||+|+|. .++-.++. ...+.+..
T Consensus 240 ~wrtN~~~~~~e~~~l~~e----~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~--~~~~~~Ia 313 (344)
T 2p0a_A 240 NWKANTGSAMLEQVAMTER----YRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHV--EEDRQLMA 313 (344)
T ss_dssp CSSTTSSSEEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGH--HHHHHHHH
T ss_pred CCeecCCceEEEeeCCCHH----HHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchh--hhHHHHHH
Confidence 1111112233345566764 6788888889995458999999999889899999999 66522221 12344444
Q ss_pred HHHHHHH
Q 013701 168 EQHMRAV 174 (438)
Q Consensus 168 ~~~l~~~ 174 (438)
+..++.+
T Consensus 314 ~~ii~~i 320 (344)
T 2p0a_A 314 DLVVSKM 320 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455543
No 81
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=98.90 Aligned_cols=72 Identities=26% Similarity=0.375 Sum_probs=60.3
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcC------CCCcEEEeeccCCceeEEEEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGG------FDRGLYVEKWAPFVKELAVIVV 74 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~------~~~~~lvEe~I~g~~E~sv~~~ 74 (438)
.+.+.+|+.++++++|||+|+||..++ +|+|+.+++|++|+.++++.+.. ....++||+||+|.+|+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~~~-~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASAGG-GGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETTSC-CTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECCCC-CCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 467899999999999999999998755 89999999999999999876531 1355999999998669887653
No 82
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.14 E-value=7e-11 Score=117.12 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHHHHH--hhCCcEEEEecCC-CCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CceeEEEEEEEecCCeEE
Q 013701 7 ESAWRAGK--QFGYPLMVKSKRL-AYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRDKSIL 82 (438)
Q Consensus 7 ee~~~~~~--~igyPvVvKP~~~-g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~~~~G~~~ 82 (438)
+++.+.++ .+|||+|+||..+ |+.|+||.++++.++|... . ..++|||||+ ++.++.|.++. +++.
T Consensus 150 ~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-----~--~~~lvQefI~~~G~dirv~VvG---~~v~ 219 (346)
T 2q7d_A 150 DDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-----Q--PPCVVQNFINHNAVLYKVFVVG---ESYT 219 (346)
T ss_dssp TTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------CCEEEEECCCCTTEEEEEEEET---TEEE
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-----C--CCEEEEEeeCCCCeEEEEEEEC---CEEE
Confidence 45555543 5789999999752 3347899999999988752 2 3499999998 24899998873 2443
Q ss_pred EEee--eeeE-----------Ee------cCeeeEEEcC-------CCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEE
Q 013701 83 CYPV--VETI-----------HK------ENICHIVKAP-------AAVPWKISELATDVAHKAVSSLEGAGIFAVELFW 136 (438)
Q Consensus 83 ~~~~--~e~~-----------~~------~g~~~~~~~P-------~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~ 136 (438)
.+.. ..++ +. .|. .....| +.+++ .++++++|.++.++||+. .+++|+++
T Consensus 220 ~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~-~~gvDii~ 295 (346)
T 2q7d_A 220 VVQRPSLKNFSAGTSDRESIFFNSHNVSKPES-SSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVS-LFGIDIII 295 (346)
T ss_dssp EEEEECCCCCC----CCCCEEEEGGGTSSTTC-CCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCC-EEEEEEEE
T ss_pred EEEEecCCCcCcCccccccccccceeeccCCc-cccccccccccccccCCC--hHHHHHHHHHHHHHhCCc-eEeeEEEe
Confidence 2211 0000 00 011 000112 23333 468999999999999997 45799999
Q ss_pred eC-CCcEEEEEEcCCCCCCCC
Q 013701 137 TN-NGQILLNEVAPRPHNSGH 156 (438)
Q Consensus 137 ~~-~g~~~viEiNpR~~~~~~ 156 (438)
+. +|.+||+|||+-||-.+.
T Consensus 296 ~~~~g~~~VlEVN~~PG~~g~ 316 (346)
T 2q7d_A 296 NNQTGQHAVIDINAFPGYEGV 316 (346)
T ss_dssp CTTTCCEEEEEEEESCCCTTC
T ss_pred ecCCCCEEEEEEeCCcccccc
Confidence 85 578999999998874443
No 83
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.09 E-value=1.1e-10 Score=117.21 Aligned_cols=142 Identities=19% Similarity=0.172 Sum_probs=95.8
Q ss_pred cccCHHHHHHHHHhhCCc-EEEEecCCC---CCCcCcEEeCCHHHHHHHHHHhcCC-------------CCcEEEeeccC
Q 013701 2 EVNDLESAWRAGKQFGYP-LMVKSKRLA---YDGRGNAVAKSEEELSSAITALGGF-------------DRGLYVEKWAP 64 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyP-vVvKP~~~g---~~g~Gv~iv~~~eel~~~~~~~~~~-------------~~~~lvEe~I~ 64 (438)
.++|.+|+.++++++||| +||||..+. +.|.||.+++|++|+.++++.+... ...++||+|++
T Consensus 24 ~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 24 ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 367899999999999999 999997631 1234999999999999999887531 14699999999
Q ss_pred CceeEEEEEEEecC-C-eEEEEeee-----eeEEe---cCeeeEEEcCCC-CCHHHHHHHHHHHHHHHHHcCceeE----
Q 013701 65 FVKELAVIVVRGRD-K-SILCYPVV-----ETIHK---ENICHIVKAPAA-VPWKISELATDVAHKAVSSLEGAGI---- 129 (438)
Q Consensus 65 g~~E~sv~~~~~~~-G-~~~~~~~~-----e~~~~---~g~~~~~~~P~~-l~~~~~~~i~~~a~~i~~~lg~~G~---- 129 (438)
+++|+++.+++|.. | .++.++.. |.... +......+.|.. +++...+ ++++.+|+.+.
T Consensus 104 ~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a~-------~~~~~lG~~~~~~~~ 176 (388)
T 2nu8_B 104 IAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGR-------ELAFKLGLEGKLVQQ 176 (388)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHHHH-------HHHHHTTCCTHHHHH
T ss_pred cCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHHHH-------HHHHHcCCCHHHHHH
Confidence 77999999999876 4 56666622 22111 233444466754 7776433 33334455431
Q ss_pred -----EEE-EEEEeCCCcEEEEEEcCCCC
Q 013701 130 -----FAV-ELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 130 -----~~v-e~~~~~~g~~~viEiNpR~~ 152 (438)
.++ +++.+ . +++.+||||+.-
T Consensus 177 ~~~~l~~l~~~~~~-~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 177 FTKIFMGLATIFLE-R-DLALIEINPLVI 203 (388)
T ss_dssp HHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHh-C-CEEEEEecceEE
Confidence 011 12222 3 589999999974
No 84
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.95 E-value=8.8e-10 Score=110.85 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=93.1
Q ss_pred cccCHHHHHHHHHhhCC-cEEEEecC-CCCCCc---------CcEEeCCHHHHHHHHHHhcCC-------------CCcE
Q 013701 2 EVNDLESAWRAGKQFGY-PLMVKSKR-LAYDGR---------GNAVAKSEEELSSAITALGGF-------------DRGL 57 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igy-PvVvKP~~-~g~~g~---------Gv~iv~~~eel~~~~~~~~~~-------------~~~~ 57 (438)
.++|.+|+.++++++|| |+||||.. .|..|+ ||.+++|++|+.++++.+.+. ...+
T Consensus 24 ~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~v 103 (395)
T 2fp4_B 24 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKV 103 (395)
T ss_dssp EESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCE
T ss_pred EECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceE
Confidence 36789999999999999 89999963 221344 499999999999999876422 1359
Q ss_pred EEeeccCCceeEEEEEEEecC-C-eEEEEeeee--eEEe----cCee--eEEEcCC-CCCHHHHHHHHHHHHHHHHHcCc
Q 013701 58 YVEKWAPFVKELAVIVVRGRD-K-SILCYPVVE--TIHK----ENIC--HIVKAPA-AVPWKISELATDVAHKAVSSLEG 126 (438)
Q Consensus 58 lvEe~I~g~~E~sv~~~~~~~-G-~~~~~~~~e--~~~~----~g~~--~~~~~P~-~l~~~~~~~i~~~a~~i~~~lg~ 126 (438)
+||+|++.++|+.+.+++|.. | .++.+...- +++. ..+. ...+.|. ++++. .+.++++.||+
T Consensus 104 lVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~~~-------~a~~l~~~lg~ 176 (395)
T 2fp4_B 104 MVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDS-------QAQRMAENLGF 176 (395)
T ss_dssp EEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCCHH-------HHHHHHHHTTC
T ss_pred EEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCCCHH-------HHHHHHHHhCc
Confidence 999999977999999999875 3 444444211 1110 1222 2222333 36663 35566666676
Q ss_pred eeEEEEE----------EEEeCCCcEEEEEEcCCCC
Q 013701 127 AGIFAVE----------LFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 127 ~G~~~ve----------~~~~~~g~~~viEiNpR~~ 152 (438)
.|...-+ ++.+ . +++++||||+.-
T Consensus 177 ~~~~~~~~~~~l~~l~~l~~~-~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 177 LGPLQNQAADQIKKLYNLFLK-I-DATQVEVNPFGE 210 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhhh-C-CeEEEEeeeEEE
Confidence 5432211 2222 3 599999999974
No 85
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=98.95 E-value=2e-10 Score=99.28 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=85.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc---CCCCCchhhh
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMV 343 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i 343 (438)
..++| +++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++ ..|++|..+.+ |+++++.++|
T Consensus 10 ~~g~V-~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~p~I~d~I 78 (152)
T 1b93_A 10 ARKHI-ALVAHDHCKQMLMSWVERHQPLLEQHVLYAT----GT----TGNLISR--ATGMNVNAMLSGPMGGDQQVGALI 78 (152)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHTHHHHTTSEEEEE----TT----HHHHHHH--HHCCCCEEECCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHH--HhCceeEEEEecCCCCCchHHHHH
Confidence 45777 7888999999999999999999 9999999 88 9999953 26999988877 3667999999
Q ss_pred hcCCCCCEEEecC--CC-C-CCCChhhHHHhhcCCCCCceEE
Q 013701 344 AARTPLPVIGVPV--RA-S-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 344 ~~~~~~pVI~~p~--~~-~-~~~g~~~l~s~~~~~~gip~~t 381 (438)
+......|||+|. .. . ..||.. +++++.-.+|||+|
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T 118 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDVKA--LLRLATVWNIPVAT 118 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHHHH--HHHHHHHTTCCEES
T ss_pred HCCCccEEEEcCCcccCCcccccHHH--HHHHHHHcCCCEEe
Confidence 9999999999997 32 2 346666 99999999999995
No 86
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=98.91 E-value=2.5e-10 Score=100.63 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc---CCCCCchhhh
Q 013701 269 VLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMV 343 (438)
Q Consensus 269 ~~~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i 343 (438)
..++| +++..|+||+.+.+.++.|.++ ||++.+| .+ |.++|++ ..|++|..+.+ |+++++.++|
T Consensus 26 ~~g~V-~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT----~g----Ta~~L~e--~~Gl~v~~v~k~~eGG~pqI~d~I 94 (178)
T 1vmd_A 26 KKKRI-ALIAHDRRKRDLLEWVSFNLGTLSKHELYAT----GT----TGALLQE--KLGLKVHRLKSGPLGGDQQIGAMI 94 (178)
T ss_dssp SSCEE-EEEECGGGHHHHHHHHHHSHHHHTTSEEEEC----HH----HHHHHHH--HHCCCCEECSCGGGTHHHHHHHHH
T ss_pred CCCEE-EEEEehhhHHHHHHHHHHHHHHhcCCEEEEc----hH----HHHHHHH--HhCceeEEEeecCCCCCchHHHHH
Confidence 45777 7888999999999999999999 9999999 77 9999953 26999988877 4667899999
Q ss_pred hcCCCCCEEEecC--C-CC-CCCChhhHHHhhcCCCCCceEE
Q 013701 344 AARTPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVAT 381 (438)
Q Consensus 344 ~~~~~~pVI~~p~--~-~~-~~~g~~~l~s~~~~~~gip~~t 381 (438)
+......|||+|. . .. ..||.. |++++.-.+|||+|
T Consensus 95 ~~geIdlVInt~dPl~~~~h~~D~~~--IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 95 AEGKIDVLIFFWDPLEPQAHDVDVKA--LIRIATVYNIPVAI 134 (178)
T ss_dssp HTTSCCEEEEECCSSSCCTTSCCHHH--HHHHHHHTTCCEES
T ss_pred HCCCccEEEEccCccCCCcccccHHH--HHHHHHHcCCCEEe
Confidence 9999999999998 3 22 467777 99999999999995
No 87
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=98.79 E-value=1.1e-09 Score=92.74 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=90.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc---CCCCCchhhhhc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA---GGAAHLPGMVAA 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a---g~~~~l~~~i~~ 345 (438)
.++ -++..|+||+.+.+.++.+.++ ||++.+| .+ |.+++++. .|++|..+.+ |+++++.++|+.
T Consensus 4 ~~i-alsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT----~g----Ta~~L~e~--~Gl~v~~v~k~~~eG~p~I~d~I~~ 72 (134)
T 2xw6_A 4 RAL-ALIAHDAKKEEMVAFCQRHREVLARFPLVAT----GT----TGRRIEEA--TGLTVEKLLSGPLGGDQQMGARVAE 72 (134)
T ss_dssp CEE-EEEECGGGHHHHHHHHHHTHHHHTTSCEEEC----HH----HHHHHHHH--HCCCCEECSCGGGTHHHHHHHHHHT
T ss_pred cEE-EEEEecccHHHHHHHHHHHHHHhCCCEEEEc----cH----HHHHHHHh--hCceEEEEEecCCCCcchHHHHHHC
Confidence 456 4456899999999999999999 9999999 77 99999532 6999888866 567899999999
Q ss_pred CCCCCEEEecC--C-CC-CCCChhhHHHhhcCCCCCceE-EEEeCCcchHHHHHH
Q 013701 346 RTPLPVIGVPV--R-AS-ALDGLDSLLSIVQMPRGVPVA-TVAINNATNAGLLAV 395 (438)
Q Consensus 346 ~~~~pVI~~p~--~-~~-~~~g~~~l~s~~~~~~gip~~-tv~i~~~~~Aa~~a~ 395 (438)
.....|||+|. . .. ..||.. |++++.-.+|||+ |+. ++.|++.++
T Consensus 73 geIdlVInt~~pl~~~~h~~D~~~--IrR~A~~~~IP~~T~la---tA~a~v~al 122 (134)
T 2xw6_A 73 GRILAVIFFRDPLTAQPHEPDVQA--LLRVCDVHGVPLATNPM---AAEALIPWL 122 (134)
T ss_dssp TCEEEEEEECCTTTCCTTSCCSHH--HHHHHHHHTCCEECSHH---HHHHHHHHH
T ss_pred CCccEEEEccCcccCCCccchHHH--HHHHHHHcCCCeEcCHH---HHHHHHHHH
Confidence 99999999998 3 22 578888 9999999999999 443 666666665
No 88
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.37 E-value=1.1e-06 Score=88.31 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=64.3
Q ss_pred cccCHHHHHHHHHhhCCcEEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcCC------CCcEEEeeccCCceeEEE
Q 013701 2 EVNDLESAWRAGKQFGYPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF------DRGLYVEKWAPFVKELAV 71 (438)
Q Consensus 2 ~v~s~ee~~~~~~~igyPvVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~~------~~~~lvEe~I~g~~E~sv 71 (438)
.++|.+|+.++++++|||+||||... .+|+ ||.+++|++|+.++++++... ...++||+|+++++|+.+
T Consensus 24 ~~~s~eea~~aa~~lG~PvVvKa~~~-~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~v 102 (397)
T 3ufx_B 24 VAYTPEEAKRIAEEFGKRVVIKAQVH-VGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYA 102 (397)
T ss_dssp EESSHHHHHHHHHHHTSCEEEEECCS-SSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEE
T ss_pred EECCHHHHHHHHHHcCCCEEEEEccc-cCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEE
Confidence 36789999999999999999999762 2344 999999999999999987642 256999999996699999
Q ss_pred EEEEecC
Q 013701 72 IVVRGRD 78 (438)
Q Consensus 72 ~~~~~~~ 78 (438)
.+.+|..
T Consensus 103 gv~~D~~ 109 (397)
T 3ufx_B 103 GLILDRA 109 (397)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 9998865
No 89
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.18 E-value=9.5e-07 Score=84.41 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=76.9
Q ss_pred HhhCCcEEEEecCCC----------CCCcCc----EEeCCHHHHHHHHHHhcCCCCcEEEeeccC-CceeEEEEEEEecC
Q 013701 14 KQFGYPLMVKSKRLA----------YDGRGN----AVAKSEEELSSAITALGGFDRGLYVEKWAP-FVKELAVIVVRGRD 78 (438)
Q Consensus 14 ~~igyPvVvKP~~~g----------~~g~Gv----~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-g~~E~sv~~~~~~~ 78 (438)
+.+++|+|+||..+. +.|.|. ..+.|.+.....- ......+.+|+||||+ +++.+.+.++.+
T Consensus 142 ~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~-~~vr~~~~~i~QEFI~~~G~DIRv~vVG~-- 218 (330)
T 3t7a_A 142 EVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGP-- 218 (330)
T ss_dssp EEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC-CSCCSSSCEEEEECCCCSSEEEEEEEEST--
T ss_pred ccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh-hhhccCCcEEEEeccCCCCceEEEEEECC--
Confidence 456899999996532 123343 3444433210000 0112235699999997 248888887742
Q ss_pred CeEE----EEee-ee-eEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCC
Q 013701 79 KSIL----CYPV-VE-TIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 79 G~~~----~~~~-~e-~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
++. ..++ .+ .+..+-.....-.|..++++ .+++|.++++++|. +++++|++.++ +..||+|+|.++-
T Consensus 219 -~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~e----ek~iA~kaa~a~G~-~v~GVDlLrs~-~~~~V~EVNg~~f 291 (330)
T 3t7a_A 219 -DYAHAEARKSPALDGKVERDSEGKEVRYPVILNAR----EKLIAWKVCLAFKQ-TVCGFDLLRAN-GQSYVCDVNGFSF 291 (330)
T ss_dssp -TCEEEEEEECTTSSCBCCBCTTSCBCCEECCCCHH----HHHHHHHHHHHTTB-SEEEEEEEEET-TEEEEEEEEESCC
T ss_pred -EEEEEEEEeCCCCCCcEEEcCCCCceeeeecCCHH----HHHHHHHHHHHhCC-ceEEEEEEEEC-CccEEEEeCCCcc
Confidence 322 1111 11 11111111111236678875 57899999999997 78999999875 5589999999974
No 90
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.02 E-value=9.5e-05 Score=73.32 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=84.7
Q ss_pred hCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccC-------CceeEEE--EEEEecCCeEEE---
Q 013701 16 FGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAP-------FVKELAV--IVVRGRDKSILC--- 83 (438)
Q Consensus 16 igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~-------g~~E~sv--~~~~~~~G~~~~--- 83 (438)
-+.++|+||..+ +.|+|+.++++.+++.+.++.. . ..++||+||+ +++-|++ -++...--+++.
T Consensus 146 ~~~~wI~KP~~~-srG~GI~l~~~~~~i~~~~~~~-~--~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~~ 221 (380)
T 3tig_A 146 EGNVWIAKSSSG-AKGEGILISSDATELLDFIDNQ-G--QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYRE 221 (380)
T ss_dssp CCCCEEEEESCC-----CCBCCSCSHHHHHHHHHH-T--SCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECSC
T ss_pred CCCeEEEeCCcc-CCCCCEEEeCCHHHHHHHHhcc-C--CcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEcC
Confidence 368999999764 5899999999999998876542 2 3499999996 3454443 333322111211
Q ss_pred ----Eeeee----eE-----EecCee-----eEEEc---------------------CCCCCHHHHHHHHHHHHHHHHH-
Q 013701 84 ----YPVVE----TI-----HKENIC-----HIVKA---------------------PAAVPWKISELATDVAHKAVSS- 123 (438)
Q Consensus 84 ----~~~~e----~~-----~~~g~~-----~~~~~---------------------P~~l~~~~~~~i~~~a~~i~~~- 123 (438)
+.... +. +-...+ ...+. .....+.+..+|++++...+.+
T Consensus 222 g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~ 301 (380)
T 3tig_A 222 GVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCL 301 (380)
T ss_dssp CEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 11100 00 000000 00000 0011234566777776665554
Q ss_pred ---c-----Cc--eeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeeccCcHHHHHHHHHhC
Q 013701 124 ---L-----EG--AGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVG 176 (438)
Q Consensus 124 ---l-----g~--~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~~~~~~~~~l~~~~G 176 (438)
+ .. ..++++||+++++..++++|||..|+-... .-.++++..++.++.
T Consensus 302 ~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~-----~i~~l~~~~~~iavd 359 (380)
T 3tig_A 302 EPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK-----LYAELCKGIVDLAIS 359 (380)
T ss_dssp HHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTT-----THHHHHHHHHHHTTT
T ss_pred HHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHH-----hHHHHHHHHHHHhcc
Confidence 2 12 379999999999999999999999973221 123456666666554
No 91
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.82 E-value=0.0031 Score=63.55 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=63.1
Q ss_pred cCHHHHHHHHHhhC-CcEEEEecCCC---CCCcCcEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--ce
Q 013701 4 NDLESAWRAGKQFG-YPLMVKSKRLA---YDGRGNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--VK 67 (438)
Q Consensus 4 ~s~ee~~~~~~~ig-yPvVvKP~~~g---~~g~Gv~iv~~~eel~~~~~~~~~~----------~~~~lvEe~I~g--~~ 67 (438)
+|.+|+.+.++++| ||+|+|+.... ..+-||.+..|++|+.+++.++... -..++||++++. .+
T Consensus 38 ~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~ 117 (425)
T 3mwd_A 38 TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAE 117 (425)
T ss_dssp CCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCc
Confidence 56799999999999 99999996531 1223899999999999988776421 145999999974 48
Q ss_pred eEEEEEEEecCCeEEEEe
Q 013701 68 ELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 68 E~sv~~~~~~~G~~~~~~ 85 (438)
|+-+-+..|..|.+..+.
T Consensus 118 E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 118 EFYVCIYATREGDYVLFH 135 (425)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEecCCCCEEEEE
Confidence 999999988876655553
No 92
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.95 E-value=0.014 Score=63.30 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=63.0
Q ss_pred cCHHHHHHHHHhhC-CcEEEEecCCCCCCc----CcEEeCCHHHHHHHHHHhcCC----------CCcEEEeeccCC--c
Q 013701 4 NDLESAWRAGKQFG-YPLMVKSKRLAYDGR----GNAVAKSEEELSSAITALGGF----------DRGLYVEKWAPF--V 66 (438)
Q Consensus 4 ~s~ee~~~~~~~ig-yPvVvKP~~~g~~g~----Gv~iv~~~eel~~~~~~~~~~----------~~~~lvEe~I~g--~ 66 (438)
++.+|+.+.++.+| ||+|||+... .+|| ||.+..|++|+.+++.++... -..++||++++. .
T Consensus 38 ~~~~eA~~aa~~lg~~pvVvKaQv~-~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~ 116 (829)
T 3pff_A 38 TDWARLLQDHPWLLSQNLVVKPDQL-IKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA 116 (829)
T ss_dssp CCHHHHHHHCTHHHHSCEEEEECSS-CSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGG
T ss_pred CCHHHHHHHHHHhCCCCEEEEeccc-ccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCc
Confidence 46789999999998 9999999653 2343 799999999999988776421 145999999974 4
Q ss_pred eeEEEEEEEecCCeEEEEe
Q 013701 67 KELAVIVVRGRDKSILCYP 85 (438)
Q Consensus 67 ~E~sv~~~~~~~G~~~~~~ 85 (438)
+|+-+-+..|..|.+..+.
T Consensus 117 ~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 117 EEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp GEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEecCCCCEEEEE
Confidence 8999999988876665554
No 93
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=94.59 E-value=0.029 Score=55.89 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=64.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.||++....+....++.+.|++ |+.+.......+-+.+.+.+.++.+++.+++++|++-||+ -.+...++-....
T Consensus 53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~ 131 (387)
T 3uhj_A 53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGA 131 (387)
T ss_dssp SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCC
Confidence 5787888776655667778888999 9987444456677777788888888888999999999887 4788888888899
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 132 p~i~IPTT 139 (387)
T 3uhj_A 132 RIVIAPTI 139 (387)
T ss_dssp EEEECCSS
T ss_pred CEEEecCc
Confidence 99999984
No 94
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=94.09 E-value=1 Score=40.17 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=77.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP 350 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p 350 (438)
.++++++....-...+ .+...+++.+++.. .++.++..+..+++ +.|++|+|.-. .-..+|..++..|
T Consensus 5 ~~I~~iapy~~l~~~~---~~i~~e~~~~i~i~----~~~l~~~v~~a~~~-~~~~dVIISRG----gta~~lr~~~~iP 72 (196)
T 2q5c_A 5 LKIALISQNENLLNLF---PKLALEKNFIPITK----TASLTRASKIAFGL-QDEVDAIISRG----ATSDYIKKSVSIP 72 (196)
T ss_dssp CEEEEEESCHHHHHHH---HHHHHHHTCEEEEE----ECCHHHHHHHHHHH-TTTCSEEEEEH----HHHHHHHTTCSSC
T ss_pred CcEEEEEccHHHHHHH---HHHHhhhCCceEEE----ECCHHHHHHHHHHh-cCCCeEEEECC----hHHHHHHHhCCCC
Confidence 4565666332222333 33444566655554 55677777888877 78999888654 3567788889999
Q ss_pred EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013701 351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~--------~~~~~~~~~~~~~ 414 (438)
||.+|+++ .|=+.+|...-+... .++.|+-.|....+-.-.++|++. ..++.+.++..+.
T Consensus 73 VV~I~~s~--~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 73 SISIKVTR--FDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp EEEECCCH--HHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred EEEEcCCH--hHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 99999862 222333333333322 577777667666666667777753 3466666555444
No 95
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=93.79 E-value=0.042 Score=54.27 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=66.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++.........++...|++.|+++...+.+-+-+.+.+.+..+.+++.+++++|++-||+ -.+.+.++-....
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 111 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDA 111 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 578788866554556777888888899987544444444445667777777888999999998876 5888888877889
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 112 p~i~IPTT 119 (370)
T 1jq5_A 112 YIVIVPTA 119 (370)
T ss_dssp EEEEEESS
T ss_pred CEEEeccc
Confidence 99999985
No 96
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=93.17 E-value=0.095 Score=52.02 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=65.7
Q ss_pred CeEEEEEecCCCHH---HHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhc
Q 013701 271 PRIGIIMGSDSDLP---VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAA 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~~---~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~ 345 (438)
.++.|+++....+. ...++.+.|++.|+++.. .-...+.+.+.+.+.++.+++.+++++|++-||+ -.+...++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~ 113 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGI 113 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHH
Confidence 47878887665555 788899999999988632 1134567777888888888889999999998876 467777776
Q ss_pred C------------------CCCCEEEecCC
Q 013701 346 R------------------TPLPVIGVPVR 357 (438)
Q Consensus 346 ~------------------~~~pVI~~p~~ 357 (438)
. ...|+|.+|+.
T Consensus 114 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 143 (387)
T 3bfj_A 114 AATHEGDLYQYAGIETLTNPLPPIVAVNTT 143 (387)
T ss_dssp HHHSSSCSGGGCBSSCCCSCCCCEEEEECS
T ss_pred HHhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 3 57899999985
No 97
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=93.08 E-value=0.12 Score=51.27 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=65.0
Q ss_pred CeEEEEEecCCCHH-HHHHHHHHHHHcCCcEE-EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCC
Q 013701 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAART 347 (438)
Q Consensus 271 ~~v~iv~gs~sD~~-~~~~~~~~L~~~G~~~~-~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~ 347 (438)
.++.||++..-.+. ...++.+.|++.|+.+. ..-...+-+.+.+.+.++.+++.+++++|++-||+. .+...++...
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVA 111 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 57878886532222 46778888999998863 223456888888888888888889999999998873 5666666543
Q ss_pred ------------------CCCEEEecCC
Q 013701 348 ------------------PLPVIGVPVR 357 (438)
Q Consensus 348 ------------------~~pVI~~p~~ 357 (438)
..|+|.+|+.
T Consensus 112 ~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 112 TNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp HSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred hCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 7899999985
No 98
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=92.93 E-value=0.094 Score=51.38 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=67.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.|+++....+....++...|++.|+++..-.-..+.+.+.+.+. +.+++.+++++|++-||+ -.+.+.++-....
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~~ 113 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRKL 113 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHHhhcCC
Confidence 47878887665556678888889889988754331357777777777 777888899999998876 5888888888889
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 114 p~i~IPTT 121 (354)
T 3ce9_A 114 PFISVPTS 121 (354)
T ss_dssp CEEEEESC
T ss_pred CEEEecCc
Confidence 99999985
No 99
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=92.45 E-value=0.32 Score=48.28 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhh
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGM 342 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~ 342 (438)
..++.|+++.........++.+.|.+.|+++..-+.. .+.+.+.+.+..+.+.+.|+ +++|++-||+ ..+.++
T Consensus 62 ~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~ 141 (390)
T 3okf_A 62 KQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGF 141 (390)
T ss_dssp TCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHH
T ss_pred CCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHH
Confidence 3578899988776678888899999999987654433 35677778888888888888 5899988876 578888
Q ss_pred hh--cCCCCCEEEecCC
Q 013701 343 VA--ARTPLPVIGVPVR 357 (438)
Q Consensus 343 i~--~~~~~pVI~~p~~ 357 (438)
+| -..-.|+|.+|+.
T Consensus 142 ~Aa~~~rgip~I~IPTT 158 (390)
T 3okf_A 142 AAACYQRGVDFIQIPTT 158 (390)
T ss_dssp HHHHBTTCCEEEEEECS
T ss_pred HHHHhcCCCCEEEeCCC
Confidence 86 3677899999995
No 100
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=92.44 E-value=0.23 Score=49.03 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCHH--HHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcC
Q 013701 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR 346 (438)
Q Consensus 271 ~~v~iv~gs~sD~~--~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~ 346 (438)
.++.|+++..+-.. ...++.+.|++.|+.+.. .-...+.+.+.+.+.++.+++.+++++|++-||+ -.+..+++..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 57878887644333 678888899999987532 2234677888888888888888999999998876 4677777664
Q ss_pred ------------------CCCCEEEecCC
Q 013701 347 ------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 ------------------~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 121 LKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp TTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 57899999985
No 101
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=92.17 E-value=0.11 Score=52.65 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=64.9
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPLP 350 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~p 350 (438)
++.|+++....+....++...|++.|+++...+.+-+-+-+.+.+..+.+++ +++++|++-||+ -.+.+.++-....|
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~giP 171 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMNLP 171 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHHTTCC
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcCCC
Confidence 7888887655555677888889999998754444445544556666666666 899999998876 58889998888999
Q ss_pred EEEecCC
Q 013701 351 VIGVPVR 357 (438)
Q Consensus 351 VI~~p~~ 357 (438)
+|.+|+.
T Consensus 172 ~I~IPTT 178 (450)
T 1ta9_A 172 SIICPTT 178 (450)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999984
No 102
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=92.08 E-value=0.062 Score=52.78 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=63.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.||++.. ......++.+.|++.++.+...+ ..+.+.+.+.+.++.+++.+++++|++-||+ -.+...++.....
T Consensus 35 ~r~liVtd~~-~~~~~~~v~~~L~~~~~~v~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~ 112 (353)
T 3hl0_A 35 SRALVLSTPQ-QKGDAEALASRLGRLAAGVFSEA-AMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTDA 112 (353)
T ss_dssp CCEEEECCGG-GHHHHHHHHHHHGGGEEEEECCC-CTTCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred CEEEEEecCc-hhhHHHHHHHHHhhCCcEEecCc-CCCCcHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence 4677888654 34567777788887665443322 2355667777778888888999999999887 4788899999999
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 113 p~i~IPTT 120 (353)
T 3hl0_A 113 AQIVIPTT 120 (353)
T ss_dssp EEEEEECS
T ss_pred CEEEEeCC
Confidence 99999985
No 103
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=91.97 E-value=0.23 Score=49.46 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHc------CCcEEEEEEec---CCChhHHHHHHHHHhhcC--C---eEEEEEcCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMF------SVPHEVRIVSA---HRTPDLMFSYASSAHERG--I---EIIIAGAGGA 336 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~------G~~~~~~v~s~---h~~~~~~~~~~~~~~~~g--~---~v~i~~ag~~ 336 (438)
.++.|++..........++.+.|... |+.+...+... +.+.+.+.+..+.+.+.| + +++|++-||+
T Consensus 37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs 116 (393)
T 1sg6_A 37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV 116 (393)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH
Confidence 47878886543333567777788777 88876444444 677788888888888889 8 8999998876
Q ss_pred -CCchhhhhc--CCCCCEEEecCC
Q 013701 337 -AHLPGMVAA--RTPLPVIGVPVR 357 (438)
Q Consensus 337 -~~l~~~i~~--~~~~pVI~~p~~ 357 (438)
..+.+++|+ ..-.|+|.+|+.
T Consensus 117 v~D~ak~~Aa~~~rgip~i~IPTT 140 (393)
T 1sg6_A 117 IGDLTGFVASTYMRGVRYVQVPTT 140 (393)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCc
Confidence 689999884 567899999994
No 104
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=91.61 E-value=0.074 Score=52.34 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~~ 349 (438)
.++.||++... .....++.+.|++.++.+.-. ...+.+.+.+.+.++.+++.+++++|++-||+ -.+...++.....
T Consensus 37 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~~f~~-v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~~ 114 (358)
T 3jzd_A 37 KRALVLCTPNQ-QAEAERIADLLGPLSAGVYAG-AVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIALETGM 114 (358)
T ss_dssp SCEEEECCGGG-HHHHHHHHHHHGGGEEEEECC-CCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHCC
T ss_pred CeEEEEeCCcH-HHHHHHHHHHhccCCEEEecC-CcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence 46778886643 456777777887765543322 22455667777777778888999999999887 4788899999999
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 115 p~i~IPTT 122 (358)
T 3jzd_A 115 PIVAIPTT 122 (358)
T ss_dssp CEEEEECS
T ss_pred CEEEEeCC
Confidence 99999985
No 105
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=91.24 E-value=0.32 Score=48.52 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=62.5
Q ss_pred CeEEEEEecCCCHH--HHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhh
Q 013701 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~~--~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~ 344 (438)
.++.||++..+-.. ...++...|++.|+.+. +.+ .+-+.+.+.+.++.+++.+++++|++-||+ -.+...++
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA 121 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVA 121 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHH
Confidence 46778886332223 57888888999998764 322 366677788888888889999999998876 36777776
Q ss_pred cC------------------CCCCEEEecCC
Q 013701 345 AR------------------TPLPVIGVPVR 357 (438)
Q Consensus 345 ~~------------------~~~pVI~~p~~ 357 (438)
.. ...|+|.+|+.
T Consensus 122 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 152 (407)
T 1vlj_A 122 AGALYEGDIWDAFIGKYQIEKALPIFDVLTI 152 (407)
T ss_dssp HHTTCSSCGGGGGGTSCCCCCCCCEEEEECS
T ss_pred HHHhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 63 57899999985
No 106
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=90.17 E-value=0.17 Score=50.15 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=62.4
Q ss_pred CeEEEEEecCCCHH-HHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcC-
Q 013701 271 PRIGIIMGSDSDLP-VMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAAR- 346 (438)
Q Consensus 271 ~~v~iv~gs~sD~~-~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~- 346 (438)
.++.|+++...... ...++...|++.|+++.. .-...+.+.+.+.+.++.+++.+++++|++-||+ -.+..+++..
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 46767775433222 577888888889987632 2134566777888888888888999999998876 3666666653
Q ss_pred -------------------CCCCEEEecCC
Q 013701 347 -------------------TPLPVIGVPVR 357 (438)
Q Consensus 347 -------------------~~~pVI~~p~~ 357 (438)
...|+|.+|+.
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 141 (386)
T 1rrm_A 112 NNPEFADVRSLEGLSPTNKPSVPILAIPTT 141 (386)
T ss_dssp HCGGGTTSGGGSEECCCCSCCSCEEEEECS
T ss_pred hCCCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 37899999984
No 107
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=88.60 E-value=12 Score=33.83 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=69.1
Q ss_pred HHHHHcCCcEEEEEEecCCChhHHHHHHHHH-hhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHH
Q 013701 291 KILTMFSVPHEVRIVSAHRTPDLMFSYASSA-HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLS 369 (438)
Q Consensus 291 ~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~-~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s 369 (438)
+...+++...+..+. .++.++..+..++. ...|++|+|.-. .-..+|..++..|||.+|++ |+| +++
T Consensus 30 ~i~~e~~~~~~I~vi--~~~le~av~~a~~~~~~~~~dVIISRG----gta~~Lr~~~~iPVV~I~vs-----~~D-il~ 97 (225)
T 2pju_A 30 DISLEFDHLANITPI--QLGFEKAVTYIRKKLANERCDAIIAAG----SNGAYLKSRLSVPVILIKPS-----GYD-VLQ 97 (225)
T ss_dssp HHHTTTTTTCEEEEE--CCCHHHHHHHHHHHTTTSCCSEEEEEH----HHHHHHHTTCSSCEEEECCC-----HHH-HHH
T ss_pred HHHHhhCCCceEEEe--cCcHHHHHHHHHHHHhcCCCeEEEeCC----hHHHHHHhhCCCCEEEecCC-----HHH-HHH
Confidence 344456655555543 35556666666554 334699888654 35677888899999999986 444 444
Q ss_pred hhcCCC--CCceEEEEeCCcchHHHHHHHHHcCC--------ChHHHHHHHHHHH
Q 013701 370 IVQMPR--GVPVATVAINNATNAGLLAVRMLGFG--------DADLRARMQQYME 414 (438)
Q Consensus 370 ~~~~~~--gip~~tv~i~~~~~Aa~~a~~il~~~--------~~~~~~~~~~~~~ 414 (438)
.++... +=.++.|+-.+....+-.-.++|++. ..++.+.++..+.
T Consensus 98 aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~ 152 (225)
T 2pju_A 98 FLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA 152 (225)
T ss_dssp HHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 444422 22477777677777776677788764 3455555554443
No 108
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=87.59 E-value=0.76 Score=45.20 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=63.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcC---CeEEEEEcCCC-CCchhhh
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i 343 (438)
.+++|+++..... ...++.+.|...|+++...+.. .+.+.+.+.+..+.+.+.| .+++|++-||+ ..+.+++
T Consensus 44 ~rvlIVtd~~v~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~ 122 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFA 122 (368)
T ss_dssp SEEEEEECGGGHH-HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECccHHH-HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 5787888765443 5788889999999987654432 3456666777776666666 47999988876 5888888
Q ss_pred hc--CCCCCEEEecCC
Q 013701 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVI~~p~~ 357 (438)
|+ ..-.|+|.+|+.
T Consensus 123 Aa~~~rgip~i~IPTT 138 (368)
T 3qbe_A 123 AATWLRGVSIVHLPTT 138 (368)
T ss_dssp HHHGGGCCEEEEEECS
T ss_pred HHHhccCCcEEEECCC
Confidence 83 467899999985
No 109
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=87.07 E-value=0.64 Score=45.42 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=57.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhh
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i 343 (438)
.++.|++..........++...| +.| +++..+.. .+.+.+.+.+..+.+.+.|+ +++|++-||+ -.+.+++
T Consensus 32 ~~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~v 109 (354)
T 1xah_A 32 DQSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV 109 (354)
T ss_dssp SCEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHH
T ss_pred CeEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHH
Confidence 45778876543333556666777 778 65544433 45677888888888888899 8999998876 5888888
Q ss_pred h--cCCCCCEEEecCC
Q 013701 344 A--ARTPLPVIGVPVR 357 (438)
Q Consensus 344 ~--~~~~~pVI~~p~~ 357 (438)
| -....|+|.+|+.
T Consensus 110 A~~~~rgip~i~IPTT 125 (354)
T 1xah_A 110 AATLLRGVHFIQVPTT 125 (354)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhccCCCEEEECCc
Confidence 8 4578899999985
No 110
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=86.69 E-value=1.9 Score=42.25 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=63.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcC---CeEEEEEcCCC-CCchhhh
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERG---IEIIIAGAGGA-AHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g---~~v~i~~ag~~-~~l~~~i 343 (438)
.++.|++..........++...|... +.+...+.. .+.+.+.+.+..+.+.+.| .+++|++-||+ ..+.+++
T Consensus 35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~ 113 (368)
T 2gru_A 35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVA 113 (368)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHH
Confidence 57888887776766777788888776 666444332 4556777777777777777 57999888765 5888988
Q ss_pred hc--CCCCCEEEecCC
Q 013701 344 AA--RTPLPVIGVPVR 357 (438)
Q Consensus 344 ~~--~~~~pVI~~p~~ 357 (438)
|+ ..-.|+|.+|+.
T Consensus 114 Aa~~~rgip~i~IPTT 129 (368)
T 2gru_A 114 AGMMFRGIALIHVPTT 129 (368)
T ss_dssp HHHBTTCCEEEEEECS
T ss_pred HHHhcCCCCEEEECCc
Confidence 84 557899999994
No 111
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=85.57 E-value=0.69 Score=46.10 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=56.3
Q ss_pred CeEEEEEecCCCHH--HHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhh
Q 013701 271 PRIGIIMGSDSDLP--VMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~~--~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~ 344 (438)
.++.||++..+-.. ...++.+.|. |+++. +.+ .+.+.+.+.+.++.+++.+++++|++-||+ -.+...++
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA 126 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVL--EFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIA 126 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEE--EECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEE--EeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 47777875432232 4566666665 77643 322 456677777777778888999999998876 36666666
Q ss_pred cC---------------------CCCCEEEecCC
Q 013701 345 AR---------------------TPLPVIGVPVR 357 (438)
Q Consensus 345 ~~---------------------~~~pVI~~p~~ 357 (438)
.. ...|+|.+|+.
T Consensus 127 ~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTT 160 (408)
T 1oj7_A 127 AAANYPENIDPWHILQTGGKEIKSAIPMGCVLTL 160 (408)
T ss_dssp HHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESS
T ss_pred HHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCC
Confidence 52 45899999985
No 112
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=84.89 E-value=0.43 Score=49.10 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
++++ ++|.++ |..+.++++.|.++||++.+| .+ |+++| ++.|++|..+.+
T Consensus 5 ~G~a-LISV~D--K~~iv~lAk~L~~lGf~I~AT----gG----TAk~L---~e~GI~v~~V~k 54 (593)
T 1g8m_A 5 QQLA-LLSVSE--KAGLVEFARSLNALGLGLIAS----GG----TATAL---RDAGLPVRDVSD 54 (593)
T ss_dssp CCEE-EEEESC--CTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEHHH
T ss_pred CCEE-EEEEeC--cHhHHHHHHHHHHCCCEEEEc----hH----HHHHH---HHCCCeEEEeec
Confidence 4666 777665 899999999999999999999 88 99999 677999988754
No 113
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=83.16 E-value=1.2 Score=43.43 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=57.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE--ecCCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhhh
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~--s~h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~ 344 (438)
.++.|+++..... ...++.+.|. .++. ..+- -.+.+.+.+.+..+.+.+.|+ +++|++-|++ -.+.+++|
T Consensus 29 ~kvliVtd~~v~~-~~~~v~~~L~-~~~~--~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A 104 (348)
T 1ujn_A 29 GPAALLFDRRVEG-FAQEVAKALG-VRHL--LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVA 104 (348)
T ss_dssp SCEEEEEEGGGHH-HHHHHHHHHT-CCCE--EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHH
T ss_pred CEEEEEECCcHHH-HHHHHHHHhc-cCeE--EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHH
Confidence 4677888765444 6666666666 4443 2221 245666777777777777776 6889888765 58888888
Q ss_pred c--CCCCCEEEecCC
Q 013701 345 A--RTPLPVIGVPVR 357 (438)
Q Consensus 345 ~--~~~~pVI~~p~~ 357 (438)
. ..-.|+|.+|+.
T Consensus 105 ~~~~rgip~i~IPTT 119 (348)
T 1ujn_A 105 ATYLRGVAYLAFPTT 119 (348)
T ss_dssp HHBTTCCEEEEEECS
T ss_pred HHhccCCCEEEecCc
Confidence 4 567899999984
No 114
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=82.33 E-value=0.73 Score=46.85 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=41.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--CCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RTP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~ 348 (438)
.++ ++|. +||..+.+.++.|.++||++.+| .+ |.++| ++.|++|..+.. -.+.|.++.| +|-
T Consensus 25 ~ra-LISV--~DK~glv~~Ak~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~k--vTgfPEil~GRVKTL 88 (534)
T 4ehi_A 25 MRA-LLSV--SDKEGIVEFGKELENLGFEILST----GG----TFKLL---KENGIKVIEVSD--FTKSPELFEGRVKTL 88 (534)
T ss_dssp CEE-EEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEECBC--CC-------------
T ss_pred cEE-EEEE--cccccHHHHHHHHHHCCCEEEEc----cH----HHHHH---HHCCCceeehhh--ccCCchhhCCccccC
Confidence 455 7776 57899999999999999999999 88 99999 667999887755 1234445444 455
Q ss_pred CCEE
Q 013701 349 LPVI 352 (438)
Q Consensus 349 ~pVI 352 (438)
.|-|
T Consensus 89 HP~I 92 (534)
T 4ehi_A 89 HPKI 92 (534)
T ss_dssp ----
T ss_pred Chhh
Confidence 5555
No 115
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=81.24 E-value=2.9 Score=34.63 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=48.1
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|.|+..++...+++.++...|...|+.+++... |+-+++-.-+++++..+++..+++.
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~---r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFL---NTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEEC---TTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecC---CCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 4778888899999999999999999999999721 2235588888888889999777664
No 116
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=80.34 E-value=0.96 Score=45.92 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.++ ++|. +||.-+.+.++.|.++||++.+| .+ |.++| ++.|++|..+..
T Consensus 11 ~~a-LISV--sDK~glvelAk~L~~lGfeI~AT----gG----Tak~L---~e~GI~v~~V~~ 59 (523)
T 3zzm_A 11 RRA-LISV--YDKTGLVDLAQGLSAAGVEIIST----GS----TAKTI---ADTGIPVTPVEQ 59 (523)
T ss_dssp CEE-EEEE--SSCTTHHHHHHHHHHTTCEEEEC----HH----HHHHH---HTTTCCCEEHHH
T ss_pred cEE-EEEE--eccccHHHHHHHHHHCCCEEEEc----ch----HHHHH---HHcCCceeeccc
Confidence 345 7776 57899999999999999999999 88 99999 677999887755
No 117
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=80.09 E-value=1.9 Score=43.72 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred cCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEE--eCCHHHHHHHHHHhcCCCCcEEEeeccCC
Q 013701 4 NDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAV--AKSEEELSSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 4 ~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~i--v~~~eel~~~~~~~~~~~~~~lvEe~I~g 65 (438)
.+.+++..+.++.. -+|+||.. +++|.|+.+ --+.+|.++..+++...+..+++|++++-
T Consensus 350 ~~~~~~~~vl~~l~-~lViKp~~-g~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~l 411 (474)
T 3n6x_A 350 SKADDLKYVLDNLA-ELVVKEVQ-GSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLAL 411 (474)
T ss_dssp TSHHHHHHHHHSGG-GEEEEECC-CE-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCC
T ss_pred CCHHHHHHHHhchh-heEEEecC-CCCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCC
Confidence 45677777777765 79999975 568999987 35778888887777666677999999985
No 118
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=79.09 E-value=0.75 Score=45.18 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=56.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-CchhhhhcCCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMVAARTPL 349 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~ 349 (438)
.++.|+++... .....++.+.|+ .+ ....-...+-+.+.+.+.++.+++.+++++|++-||+. .+...++.....
T Consensus 38 ~rvliVtd~~~-~~~~~~v~~~L~--~~-~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~~ 113 (364)
T 3iv7_A 38 AKVMVIAGERE-MSIAHKVASEIE--VA-IWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTAL 113 (364)
T ss_dssp SSEEEECCGGG-HHHHHHHTTTSC--CS-EEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHCC
T ss_pred CEEEEEECCCH-HHHHHHHHHHcC--CC-EEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccCC
Confidence 36777876542 233333333332 12 22222234666777888888888899999999998874 788888888999
Q ss_pred CEEEecCC
Q 013701 350 PVIGVPVR 357 (438)
Q Consensus 350 pVI~~p~~ 357 (438)
|+|.+|+.
T Consensus 114 P~i~IPTT 121 (364)
T 3iv7_A 114 PIVAIPTT 121 (364)
T ss_dssp CEEEEECS
T ss_pred CEEEEcCC
Confidence 99999985
No 119
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=75.06 E-value=0.68 Score=45.06 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHhhcCC---eEEEEEcCCC-CCchhhhh--cCCCCCEEEecCC
Q 013701 308 HRTPDLMFSYASSAHERGI---EIIIAGAGGA-AHLPGMVA--ARTPLPVIGVPVR 357 (438)
Q Consensus 308 h~~~~~~~~~~~~~~~~g~---~v~i~~ag~~-~~l~~~i~--~~~~~pVI~~p~~ 357 (438)
+.+.+.+.+..+.+.+.|+ +++|++-||+ ..+.+++| -..-.|+|.+|+.
T Consensus 65 ~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTT 120 (343)
T 3clh_A 65 YKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTT 120 (343)
T ss_dssp GCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCc
Confidence 4466666666666777777 7888887765 57888877 4567899999975
No 120
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.02 E-value=0.31 Score=48.07 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=52.6
Q ss_pred CeEEEEEecCCCHHH-HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhcCCC
Q 013701 271 PRIGIIMGSDSDLPV-MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAARTP 348 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~-~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~~~~ 348 (438)
.++.|+++....... ..++.+.|++.| +...+.+-+-+.+.+.+..+.+++ +++++|++-||+ -.+...++-...
T Consensus 42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~ 118 (376)
T 1kq3_A 42 ERAFVVIDDFVDKNVLGENFFSSFTKVR--VNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK 118 (376)
T ss_dssp SEEEEEECHHHHHHTTCTTGGGGCSSSE--EEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT
T ss_pred CeEEEEECccHHhhccHHHHHHHHHHcC--CeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 467677754221111 233344454555 333343334333455566655666 889999998876 588888888888
Q ss_pred CCEEEecCC
Q 013701 349 LPVIGVPVR 357 (438)
Q Consensus 349 ~pVI~~p~~ 357 (438)
.|+|.+|+.
T Consensus 119 ~p~i~IPTT 127 (376)
T 1kq3_A 119 KPVVIVPTI 127 (376)
T ss_dssp CCEEEEESS
T ss_pred CCEEEecCc
Confidence 999999984
No 121
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=74.34 E-value=9.4 Score=35.21 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+.+.++++++.+...|.++..-.+- -.+++.+.+++++..+ .+++++|-.||.
T Consensus 38 ~~~~~~~~~~~~~i~~~g~~~~~~~~D-vt~~~~v~~~~~~~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 38 ELLEDRLNQIVQELRGMGKEVLGVKAD-VSKKKDVEEFVRRTFETYSRIDVLCNNAGI 94 (254)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 346777888888888888775444333 3456667766655432 257788887774
No 122
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=73.63 E-value=44 Score=31.14 Aligned_cols=82 Identities=6% Similarity=0.062 Sum_probs=52.5
Q ss_pred CCeEEEEEec--CCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC--Cchhh
Q 013701 270 LPRIGIIMGS--DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA--HLPGM 342 (438)
Q Consensus 270 ~~~v~iv~gs--~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~--~l~~~ 342 (438)
+..|+++... .++ ......+.+.+.++|+.+.. ...+.+++.-.++++.+...+++-+|....... .+...
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 138 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL--ADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDI 138 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEE--EECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH
Confidence 4678888755 233 34556666788889987654 356778888888888888889997776543221 12222
Q ss_pred hhcCCCCCEEEe
Q 013701 343 VAARTPLPVIGV 354 (438)
Q Consensus 343 i~~~~~~pVI~~ 354 (438)
+ .....|||-+
T Consensus 139 ~-~~~~iPvV~~ 149 (338)
T 3dbi_A 139 I-DAHSQPIMVL 149 (338)
T ss_dssp H-HHCSSCEEEE
T ss_pred H-HcCCCCEEEE
Confidence 2 2345788876
No 123
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=73.33 E-value=38 Score=31.60 Aligned_cols=107 Identities=8% Similarity=-0.032 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhccCcccc----CCCCCeEEEEEec-CCC---HHHHHHHHHHHHHcCCcEEEEEEecC--CChhHHHH
Q 013701 247 GLVESRLNSLLKEDSSDCQF----KTVLPRIGIIMGS-DSD---LPVMKDAAKILTMFSVPHEVRIVSAH--RTPDLMFS 316 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~~----~~~~~~v~iv~gs-~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h--~~~~~~~~ 316 (438)
++.++|..+++.++...|.. ..++.+|++++.+ .++ ...+..+.+.+.++|+.+...+...+ .++++-.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 95 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHH
Confidence 35666777777665543211 1123468888754 222 24455666778899999877654445 57777778
Q ss_pred HHHHHhhcCCeEEEEEcCCCCCchhhhhc--CCCCCEEEe
Q 013701 317 YASSAHERGIEIIIAGAGGAAHLPGMVAA--RTPLPVIGV 354 (438)
Q Consensus 317 ~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~~~pVI~~ 354 (438)
+++.+...+++.+|+ .+........+.. ....|||.+
T Consensus 96 ~i~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 96 SLMEALKSKSDYLIF-TLDTTRHRKFVEHVLDSTNTKLIL 134 (342)
T ss_dssp HHHHHHHTTCSEEEE-CCSSSTTHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHhcCCCEEEE-eCChHhHHHHHHHHHHcCCCEEEE
Confidence 888887889997777 4433322233222 124677655
No 124
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=72.86 E-value=2.2 Score=42.06 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=54.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcC---CeEEEEEcCCCC-Cchhhhhc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERG---IEIIIAGAGGAA-HLPGMVAA 345 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g---~~v~i~~ag~~~-~l~~~i~~ 345 (438)
.+++||++..-.. ..+.+.|+..|+.+.. .-...+-+.+.+.+.++.+++.+ ++++|++-||+. .+...++.
T Consensus 54 ~~~liVtd~~~~~---~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 54 DFVVFLVDDVHQH---KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSL 130 (375)
T ss_dssp CCEEEEEEGGGTT---SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred CeEEEEECchhhh---hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 3565777543211 1355566666877632 11234555667777777777777 899999998874 56777665
Q ss_pred CC------------------CCCEEEecCC
Q 013701 346 RT------------------PLPVIGVPVR 357 (438)
Q Consensus 346 ~~------------------~~pVI~~p~~ 357 (438)
.. ..|+|.+|+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 160 (375)
T 3rf7_A 131 MLTNPGSSSEYQGWDLIKNPAVHHIGIPTV 160 (375)
T ss_dssp HTSSCSCGGGGCEESCCCSCCCCEEEEESS
T ss_pred HHhCCCCHHHhhccccccCCCCCEEEEcCC
Confidence 43 6899999984
No 125
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.04 E-value=28 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEEe-cCCChhHHHHHHHH
Q 013701 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVS-AHRTPDLMFSYASS 320 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s-~h~~~~~~~~~~~~ 320 (438)
.++..++..|+.++..... +....+|+++++|+ .|...+.++++.+++.|+.+++--.+ -.-+.+.+.+|.+.
T Consensus 85 T~l~~gL~~A~~aLk~~~~----k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~ 160 (268)
T 4b4t_W 85 LHMATALQIAQLTLKHRQN----KVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAA 160 (268)
T ss_dssp CCHHHHHHHHHHHHHTCSC----TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccc----CCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHH
Confidence 4677888888888775431 22334676777664 57888999999999999986543332 23456677778766
Q ss_pred Hh
Q 013701 321 AH 322 (438)
Q Consensus 321 ~~ 322 (438)
..
T Consensus 161 ~N 162 (268)
T 4b4t_W 161 VN 162 (268)
T ss_dssp HC
T ss_pred hc
Confidence 54
No 126
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=71.97 E-value=59 Score=29.66 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-C-chhhhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-H-LPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~-l~~~i~ 344 (438)
+..|+++....++ ......+.+.+.++|+.+.. ...+.+++.-.++++.+...+++-+|....... . ....+.
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~ 92 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL 92 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence 4578888765444 45566667788899998764 355777888888888888889997766543222 2 333333
Q ss_pred cCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHc-------------CCChHHHHHHHH
Q 013701 345 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLG-------------FGDADLRARMQQ 411 (438)
Q Consensus 345 ~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~-------------~~~~~~~~~~~~ 411 (438)
. ..|||.+=.. . ++ ++..|..|+. .++..|++-|. .......+|++.
T Consensus 93 ~--~iPvV~i~~~---~-------------~~-~~~~V~~D~~-~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (303)
T 3kke_A 93 E--GVPAVTINSR---V-------------PG-RVGSVILDDQ-KGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEG 152 (303)
T ss_dssp T--TSCEEEESCC---C-------------TT-CCCEEEECHH-HHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHH
T ss_pred C--CCCEEEECCc---C-------------CC-CCCEEEECcH-HHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHH
Confidence 3 7888877321 1 11 2334555554 45555554431 123456677777
Q ss_pred HHHHHHH
Q 013701 412 YMEDMRD 418 (438)
Q Consensus 412 ~~~~~~~ 418 (438)
|+..+.+
T Consensus 153 f~~al~~ 159 (303)
T 3kke_A 153 YLETLAS 159 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 127
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=71.00 E-value=68 Score=29.92 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhccCcccc------CCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 247 GLVESRLNSLLKEDSSDCQF------KTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~~------~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..+++.++...|.. ..++..|+++....++ ...+..+.+.+.++|+.+. +...+.++++-.++
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~--~~~~~~~~~~~~~~ 116 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPV--VGVTDYLPEKEEKV 116 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEE--EEECTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEE--EEeCCCCHHHHHHH
Confidence 45666666666655443211 1123578888755443 3445566677788898764 44567888888889
Q ss_pred HHHHhhcCCeEEEEEcCC-CCCchhhhhcCCCCCEEEe
Q 013701 318 ASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++-+|..... .......+. ....|||-+
T Consensus 117 i~~l~~~~vdGiIi~~~~~~~~~~~~l~-~~~iPvV~i 153 (344)
T 3kjx_A 117 LYEMLSWRPSGVIIAGLEHSEAARAMLD-AAGIPVVEI 153 (344)
T ss_dssp HHHHHTTCCSEEEEECSCCCHHHHHHHH-HCSSCEEEE
T ss_pred HHHHHhCCCCEEEEECCCCCHHHHHHHH-hCCCCEEEE
Confidence 988888899966665422 212222222 346788876
No 128
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=69.53 E-value=2.3 Score=42.39 Aligned_cols=44 Identities=14% Similarity=-0.049 Sum_probs=39.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
|.+||.-+.+.++.|.++||++.+| .+ |.++| ++.|++|.-+..
T Consensus 19 SV~DK~gl~~~A~~L~~~G~eiisT----gG----Tak~L---~~~Gi~v~~Vs~ 62 (464)
T 1zcz_A 19 SLYEKEKYLDILRELHEKGWEIWAS----SG----TAKFL---KSNGIEANDVST 62 (464)
T ss_dssp ECSSTGGGHHHHHHHHHTTCEEEEC----HH----HHHHH---HHTTCCCEEGGG
T ss_pred EecCccCHHHHHHHHHHCCCEEEEC----ch----HHHHH---HHCCCceEEHHh
Confidence 4778999999999999999999998 88 99999 667999988865
No 129
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=68.58 E-value=23 Score=32.55 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=56.2
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCC---cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~---~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
.+|+++. .-++ -.....+.+.|.+.|| ++...++..++.+++..++++.+.+++++.+|+.. .. +...+..
T Consensus 3 ~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~-~~~~~~~ 79 (295)
T 3lft_A 3 AKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA-TP-AAQGLAS 79 (295)
T ss_dssp EEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES-HH-HHHHHHH
T ss_pred eEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC-cH-HHHHHHH
Confidence 4566663 2222 2344556678889999 88777788899999999999999888999877753 21 1222222
Q ss_pred cCCCCCEEEecC
Q 013701 345 ARTPLPVIGVPV 356 (438)
Q Consensus 345 ~~~~~pVI~~p~ 356 (438)
.....|||-+-.
T Consensus 80 ~~~~iPvV~~~~ 91 (295)
T 3lft_A 80 ATKDLPVIMAAI 91 (295)
T ss_dssp HCSSSCEEEESC
T ss_pred cCCCCCEEEEec
Confidence 345789998743
No 130
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=67.71 E-value=74 Score=29.06 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=78.1
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--
Q 013701 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-- 345 (438)
.+|+++.-+. --......+.+.+.++|+.+.. .....+++.-.++++.+..++++.+|+.......+...+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV--QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 4677776532 2255666677888889987654 45577888888888888888999777766444444444433
Q ss_pred CCCCCEEEecCCCCCCCChhhHHHhhcCCCCCce-EEEEeCCcchHHHHHHHHHc--------------CCChHHHHHHH
Q 013701 346 RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPV-ATVAINNATNAGLLAVRMLG--------------FGDADLRARMQ 410 (438)
Q Consensus 346 ~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~-~tv~i~~~~~Aa~~a~~il~--------------~~~~~~~~~~~ 410 (438)
....|||.+-... ++-++ ..|..|+. .++..|++-|. .......+|++
T Consensus 81 ~~~iPvV~~~~~~----------------~~~~~~~~V~~D~~-~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~ 143 (313)
T 3m9w_A 81 QEGIKVLAYDRMI----------------NDADIDFYISFDNE-KVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRA 143 (313)
T ss_dssp TTTCEEEEESSCC----------------TTSCCSEEEEECHH-HHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHH
T ss_pred HCCCeEEEECCcC----------------CCCCceEEEecCHH-HHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHH
Confidence 3467888763211 11123 35555553 44444544443 23455667777
Q ss_pred HHHHHHHHH
Q 013701 411 QYMEDMRDD 419 (438)
Q Consensus 411 ~~~~~~~~~ 419 (438)
.|+..+.+.
T Consensus 144 Gf~~~l~~~ 152 (313)
T 3m9w_A 144 GQMKVLKPY 152 (313)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777766543
No 131
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=66.47 E-value=20 Score=30.56 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=53.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEE---------------EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
+| ++.|..+....+...+..|..+|+++. +-+.|..|...++.+.++.++++|++++.+.....
T Consensus 39 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 39 QI-FTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred eE-EEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 45 555555556777777777777777643 45578888889999999999999999765544323
Q ss_pred CCchhhhhcCCCCCEEEecCC
Q 013701 337 AHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 337 ~~l~~~i~~~~~~pVI~~p~~ 357 (438)
..|... ..-+|-+|..
T Consensus 118 s~l~~~-----ad~~l~~~~~ 133 (186)
T 1m3s_A 118 SSIGKQ-----ADLIIRMPGS 133 (186)
T ss_dssp SHHHHH-----CSEEEECSCC
T ss_pred CchHHh-----CCEEEEeCCc
Confidence 333332 2357777764
No 132
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=65.77 E-value=27 Score=28.70 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCch--------hhhhcCCCCCEEEec
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP--------GMVAARTPLPVIGVP 355 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~--------~~i~~~~~~pVI~~p 355 (438)
..+.++.+.+...|++++..+. ++.|.+ .+++.+++.+++.+|.++-+...+. .-+..+...||+-||
T Consensus 83 ~~l~~~~~~~~~~g~~~~~~v~--~G~~~~--~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 83 NKMENIKKELEDVGFKVKDIIV--VGIPHE--EIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE--EECHHH--HHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHcCCceEEEEc--CCCHHH--HHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 3455566667788998776654 455533 3444457778998888774333332 223345678888887
Q ss_pred CC
Q 013701 356 VR 357 (438)
Q Consensus 356 ~~ 357 (438)
..
T Consensus 159 ~~ 160 (162)
T 1mjh_A 159 RK 160 (162)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 133
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=65.76 E-value=36 Score=24.71 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEE---------EEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~---------~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+...|-.|+.++...+......|...|++.. +. ++...+.++..+.+.+++..|++++|+
T Consensus 8 ~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~-vGpf~~~~~A~~~~~~L~~~g~~~~iv 76 (79)
T 1x60_A 8 GLYKVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQ-IGAFSSKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEE-EEEESSHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEE-ECCcCCHHHHHHHHHHHHHcCCceEEE
Confidence 4455667777777777777777777777632 22 233455566666666666667776654
No 134
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=65.51 E-value=26 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=51.3
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEE---------------EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
+| ++.|..+....+...+..|..+|+++. +-+.|..|...++.+.++.++++|++++.......
T Consensus 42 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 42 KI-FIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp SE-EEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCC
T ss_pred EE-EEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45 555655556677777777777776532 45578888888999999999999999765543222
Q ss_pred CCchhhhhcCCCCCEEEecC
Q 013701 337 AHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 337 ~~l~~~i~~~~~~pVI~~p~ 356 (438)
+ |.. . ..-+|-+|.
T Consensus 121 s-l~~----~-ad~~l~~~~ 134 (180)
T 1jeo_A 121 N-VVE----F-ADLTIPLEV 134 (180)
T ss_dssp G-GGG----G-CSEEEECCC
T ss_pred h-HHH----h-CCEEEEeCC
Confidence 2 332 2 334666665
No 135
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=64.52 E-value=71 Score=27.70 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEec--CCCHHHHHHHHHHHHHcCCcEEEEEEecCC-ChhHHHHHHH
Q 013701 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHR-TPDLMFSYAS 319 (438)
Q Consensus 243 G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~-~~~~~~~~~~ 319 (438)
+.+..+++..+...+...+. .....+|.|++.+ ..|.....++++.+++.|+.++.--.+..- ..+ +.+|.+
T Consensus 83 ~t~l~~aL~~A~~~l~~~~~----~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~ 157 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHREN----KIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFID 157 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCSC----TTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHH
T ss_pred CchHHHHHHHHHHHHHhccc----cCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHH
Confidence 45677888888877765321 1122355555544 246778889999999999997654333222 223 556664
Q ss_pred HH
Q 013701 320 SA 321 (438)
Q Consensus 320 ~~ 321 (438)
..
T Consensus 158 ~~ 159 (192)
T 2x5n_A 158 AA 159 (192)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 136
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=63.55 E-value=79 Score=28.35 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
++.+|+++.-..++ ......+.+.+.++|+.+... ..+.++++-.+.++.+...+++.+|+...........+..
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIAL--DAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--cCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 34678888765444 234556667778888775543 5577888778888888888898777654321122333321
Q ss_pred --CCCCCEEEe
Q 013701 346 --RTPLPVIGV 354 (438)
Q Consensus 346 --~~~~pVI~~ 354 (438)
....|||.+
T Consensus 82 ~~~~~iPvV~~ 92 (291)
T 3l49_A 82 INDAGIPLFTV 92 (291)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCcEEEe
Confidence 246788876
No 137
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=63.03 E-value=30 Score=29.29 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=42.5
Q ss_pred CeEEEEEecCCCH---HHHHHHHHHHHHcCCc----EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc----CCCCC
Q 013701 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA----GGAAH 338 (438)
Q Consensus 271 ~~v~iv~gs~sD~---~~~~~~~~~L~~~G~~----~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a----g~~~~ 338 (438)
.+++|+...-.+. .-...+.+.|+++|++ ...+|-++-=.|-...++. +..+++.+|+.. |...|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la---~~~~yDavIaLG~VIrG~T~H 88 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMA---ETKKYDAIITLGTVIRGATTH 88 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHH---HTSCCSEEEEEEEEECCSSSH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHH---hcCCCCEEEEeeeeecCCchH
Confidence 4788998765554 4556667999999986 2456666666565555444 556788777644 55544
No 138
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=62.68 E-value=13 Score=34.29 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
+.+.+.+.++++.+.+.|.++..-.+- -.+++.+.+++++..++ +++++|-.||.
T Consensus 40 ~~~~~~~~~~~~~l~~~g~~~~~~~~D-v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 40 DIRATLLAESVDTLTRKGYDAHGVAFD-VTDELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEEee-CCCHHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 345666666777777666654322111 33456666666554332 46677766664
No 139
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=61.79 E-value=88 Score=29.05 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..+++.++...|. ...++.+|+++.-..++ ......+.+.+.+.|+.+.. ...+.+++...++
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~ 106 (340)
T 1qpz_A 29 EETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNLEKQRAY 106 (340)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHH
Confidence 3555666666555443210 01234678888754433 23444555677789987654 4556778877788
Q ss_pred HHHHhhcCCeEEEEEcCC-CCCchhhhhcCCCCCEEEe
Q 013701 318 ASSAHERGIEIIIAGAGG-AAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~-~~~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++-+|..... ...+...+......|||-+
T Consensus 107 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~ 144 (340)
T 1qpz_A 107 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 144 (340)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEE
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEE
Confidence 888778889977765422 2234444443346788765
No 140
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=61.66 E-value=26 Score=32.61 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCeEEEEEecC-CCHHHH-HHHHHHHHHcCCc----EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh
Q 013701 270 LPRIGIIMGSD-SDLPVM-KDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~iv~gs~-sD~~~~-~~~~~~L~~~G~~----~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
..+|+|+--.+ -.++.+ +...+.|++.|+. ++..+.++.+++.....+++++...+++++++++ .++.-.+.
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~--t~aa~a~~ 85 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA--TPTAQALV 85 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES--HHHHHHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC--CHHHHHHH
Confidence 35777774321 112322 3355778888874 7888889999999999999999888999888764 22344455
Q ss_pred hcCCCCCEEEecC
Q 013701 344 AARTPLPVIGVPV 356 (438)
Q Consensus 344 ~~~~~~pVI~~p~ 356 (438)
......|||-+-+
T Consensus 86 ~~~~~iPVVf~~v 98 (302)
T 3lkv_A 86 SATKTIPIVFTAV 98 (302)
T ss_dssp HHCSSSCEEEEEE
T ss_pred hhcCCCCeEEEec
Confidence 5667789987654
No 141
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=61.02 E-value=15 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013701 405 LRARMQQYMEDMRDDVLTKAEKL 427 (438)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~ 427 (438)
+++||+.+|.+..+++.+-.+++
T Consensus 2 lrkrlrkfrnkikeklkkigqki 24 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKI 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998888754434444
No 142
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=60.56 E-value=32 Score=29.72 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=55.7
Q ss_pred CCeEEEEEecCC------------CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc-CCeEEEEEcCCC
Q 013701 270 LPRIGIIMGSDS------------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGA 336 (438)
Q Consensus 270 ~~~v~iv~gs~s------------D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ag~~ 336 (438)
..+|+|++.||. |. ...-++..|.++|+++.....- -=+++.+.+.++++-++ +++++|+..|.+
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Ds-n~~~L~~~l~~~G~~v~~~~iv-~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDE-SGDIIKQLLIENGHKIIGYSLV-PDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCH-HHHHHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCEEEEEEeCcccccccccCCeEeeh-HHHHHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 356777776641 22 2234577889999986433221 33467777777665544 689888877655
Q ss_pred C----CchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCC---CCc
Q 013701 337 A----HLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPR---GVP 378 (438)
Q Consensus 337 ~----~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~---gip 378 (438)
. ..+.+++.... . .+.|+.-+++.++|.+ |-|
T Consensus 93 ~g~~D~t~eal~~~~~-----~-----~l~G~~~~~~~v~~~p~~~G~p 131 (178)
T 2pjk_A 93 YSPTDITVETIRKLFD-----R-----EIEGFSDVFRLVSFNDPEVKAA 131 (178)
T ss_dssp SSTTCCHHHHHGGGCS-----E-----ECHHHHHHHHHHHHTSTTTGGG
T ss_pred CCCCcchHHHHHHHhc-----c-----cCcchHHHhheeeccCCCCCCc
Confidence 3 34444543211 1 1224444577777755 655
No 143
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=60.39 E-value=33 Score=29.02 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=39.6
Q ss_pred CeEEEEEecCCCH---HHHHHHHHHHHHcCCc----EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVP----HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~---~~~~~~~~~L~~~G~~----~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+++|+...-.+. .-...+.+.|+++|++ ...+|-++-=.|-...++. +..+++.+|+..
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la---~~~~yDavIalG 79 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA---RKEDIDAVIAIG 79 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHH---TCTTCCEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHH---hcCCCCEEEEee
Confidence 4788988765554 4556667999999986 2456656655565544444 556788777644
No 144
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=60.04 E-value=10 Score=36.22 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC----CCCCEEEecCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR----TPLPVIGVPVRA 358 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~----~~~pVI~~p~~~ 358 (438)
.....++...|...|++++..... .+....++.+++...+++++|++ ||.+.+-.++.+. +..|+..+|.++
T Consensus 41 ~~~~~~i~~~L~~~g~~~~~~~t~---~~~~a~~~~~~~~~~~~d~vvv~-GGDGTv~~v~~~l~~~~~~~pl~iIP~GT 116 (337)
T 2qv7_A 41 KRELPDALIKLEKAGYETSAYATE---KIGDATLEAERAMHENYDVLIAA-GGDGTLNEVVNGIAEKPNRPKLGVIPMGT 116 (337)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECC---STTHHHHHHHHHTTTTCSEEEEE-ECHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEec---CcchHHHHHHHHhhcCCCEEEEE-cCchHHHHHHHHHHhCCCCCcEEEecCCc
Confidence 456778889999999887765422 22334455655555677766654 6776666666554 567888999864
No 145
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=60.02 E-value=1e+02 Score=28.00 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred CeEEEEEecCC--CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh-----
Q 013701 271 PRIGIIMGSDS--DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV----- 343 (438)
Q Consensus 271 ~~v~iv~gs~s--D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i----- 343 (438)
..+-++...+. ....+.++.+.|...|++++..+. +++|. ..+++.+++.+++.++.++-+...+..++
T Consensus 199 ~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~ 274 (294)
T 3loq_A 199 GELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIE--SGTPH--KAILAKREEINATTIFMGSRGAGSVMTMILGSTS 274 (294)
T ss_dssp CEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEE--CSCHH--HHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHH
T ss_pred CEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEe--cCCHH--HHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHH
Confidence 34545554433 577888899999999999877664 44443 33444457778998888886555555443
Q ss_pred ---hcCCCCCEEEecCC
Q 013701 344 ---AARTPLPVIGVPVR 357 (438)
Q Consensus 344 ---~~~~~~pVI~~p~~ 357 (438)
..+...||+-+|.+
T Consensus 275 ~~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 275 ESVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHHCSSCEEEECSC
T ss_pred HHHHhcCCCCEEEECCC
Confidence 34567888888864
No 146
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=59.93 E-value=46 Score=33.77 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=43.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|++.++.....+.+++..|...|+.++.. +..-..+.+-++.+...|++..+++
T Consensus 420 ~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 420 TQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHTTCCEEEC----SSSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 467777777888999999999999999998876 4322235555666788899955544
No 147
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=57.82 E-value=54 Score=27.77 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=34.9
Q ss_pred HcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 295 MFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 295 ~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
.++=.--+-+.|..|...++.+.++.++++|++++.+..-....|... ..-++-+|..
T Consensus 84 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~-----ad~~l~~~~~ 141 (187)
T 3sho_A 84 NLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARI-----ADHVLVAATR 141 (187)
T ss_dssp TCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH-----CSEEEECCCC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhh-----CcEEEEecCC
Confidence 333343455567788888888888888888888665544222233332 2346666653
No 148
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=57.62 E-value=16 Score=33.24 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=16.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
+++++|+|..+.+-.-..+++.|.+.|.++.+.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~ 38 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFT 38 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEE
Confidence 445555554444445555555555555554443
No 149
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=56.57 E-value=1.2e+02 Score=27.87 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhccCccc------cCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 247 GLVESRLNSLLKEDSSDCQ------FKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 247 ~ea~~ka~~~~~~i~~~~~------~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++.+++..+++.++...|. ...++.+|+++....++ ......+.+.+.+.|+.+... ..+.+++...++
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~ 108 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS--NSDQNQDKELHL 108 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE--ECCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCChHHHHHH
Confidence 3566666666665544220 11234578888754333 344555667778899886543 445667777778
Q ss_pred HHHHhhcCCeEEEEEcCCCC-CchhhhhcCCCCCEEEe
Q 013701 318 ASSAHERGIEIIIAGAGGAA-HLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~~-~l~~~i~~~~~~pVI~~ 354 (438)
++.+...+++.+|....... .....+. ....|||.+
T Consensus 109 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~ 145 (332)
T 2hsg_A 109 LNNMLGKQVDGIIFMSGNVTEEHVEELK-KSPVPVVLA 145 (332)
T ss_dssp HHHTSCCSSCCEEECCSSCCHHHHHHHT-TSSSCEEEE
T ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHH-hCCCCEEEE
Confidence 88877788996665442221 1222222 345788876
No 150
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=56.56 E-value=12 Score=27.70 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=40.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE-------EE-EecCCChhHHHHHHHHHhhcCCeEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-------RI-VSAHRTPDLMFSYASSAHERGIEIII 330 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~-------~v-~s~h~~~~~~~~~~~~~~~~g~~v~i 330 (438)
+...|-.|+.++...++.....|...|++... +| ++...+.++..+.+.+++..|++..+
T Consensus 8 ~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 8 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp CBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred ccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 34446678888999999999999998887432 11 33455566667777777777777433
No 151
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=56.45 E-value=1.1e+02 Score=27.08 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC--CCCchhhhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG--AAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~--~~~l~~~i~ 344 (438)
+++|+++..+.++ ......+.+.+.++|+.+.. ...+.++++-.++++.+...+++.+|..... .......+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 3577788765544 33445555677788987654 3557788888888888888899977765433 122222222
Q ss_pred cCCCCCEEEe
Q 013701 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVI~~ 354 (438)
....|||.+
T Consensus 80 -~~~iPvV~~ 88 (272)
T 3o74_A 80 -DKGLPVIAI 88 (272)
T ss_dssp -HTTCCEEEE
T ss_pred -HcCCCEEEE
Confidence 246788866
No 152
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=56.39 E-value=41 Score=26.56 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
..+.++.+.+...|++++..+. ++.|.+ .+++.++ +++.++..+.+...+..++
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~--~g~~~~--~I~~~a~--~~dliV~G~~~~~~~~~~~ 119 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIK--EGEPVE--MVLEEAK--DYNLLIIGSSENSFLNKIF 119 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEE--ESCHHH--HHHHHHT--TCSEEEEECCTTSTTSSCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEe--cCChHH--HHHHHHh--cCCEEEEeCCCcchHHHHh
Confidence 3455566667778888776654 454433 3333334 7888888774444444444
No 153
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=55.56 E-value=30 Score=30.18 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCeEEEEEecCC------CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----Cc
Q 013701 270 LPRIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HL 339 (438)
Q Consensus 270 ~~~v~iv~gs~s------D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l 339 (438)
..+|+|++.+|. |. ...-++..|+++|+++..... .-=+++.+.+.++++-..+++++|+..|.+. ..
T Consensus 30 ~~rvaIistGdEl~~G~~Ds-n~~~L~~~L~~~G~~v~~~~i-v~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t 107 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDH-SGPLVTELLTEAGFVVDGVVA-VEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVT 107 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCS-HHHHHHHHHHHTTEEEEEEEE-ECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH
T ss_pred CCEEEEEEECcccCCCCcCc-HHHHHHHHHHHCCCEEEEEEE-eCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccH
Confidence 457777776541 21 234457788999988643311 1345677777776654357899888876554 34
Q ss_pred hhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCc
Q 013701 340 PGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVP 378 (438)
Q Consensus 340 ~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip 378 (438)
+.+++..-. .+ +.|+.-+++.++|.+|-|
T Consensus 108 ~eal~~l~~-----~~-----l~G~~~~f~~v~~kpG~p 136 (185)
T 3rfq_A 108 PESTREILD-----RE-----ILGIAEAIRASGLSAGII 136 (185)
T ss_dssp HHHHHTTCS-----EE-----CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc-----cc-----CccHHHHHHHHhcCCCCC
Confidence 444543221 11 236666677778766665
No 154
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=55.37 E-value=83 Score=29.21 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc-CCCCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~~ 345 (438)
+..|+++....++ ...+..+.+.+.++||.+.. ...+.++++-.++++.+..++++-+|... .....+...+.
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~- 138 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLI--GNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILS- 138 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHH-
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHh-
Confidence 4578888754333 56667777888899988654 45688888888889888888999666554 22223333332
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||-+
T Consensus 139 ~~~iPvV~~ 147 (339)
T 3h5o_A 139 QHALPVVYM 147 (339)
T ss_dssp HTTCCEEEE
T ss_pred cCCCCEEEE
Confidence 345788876
No 155
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.85 E-value=1.2e+02 Score=27.15 Aligned_cols=85 Identities=7% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
++.+|+++....++ ......+.+.+.++|+.+.. ...+.+++.-.++++.+...+++.+|........+...+..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~ 84 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALV--ATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE 84 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 34678888865544 23345555677889987654 45678888888888888888999777765433333333332
Q ss_pred --CCCCCEEEec
Q 013701 346 --RTPLPVIGVP 355 (438)
Q Consensus 346 --~~~~pVI~~p 355 (438)
....|||.+=
T Consensus 85 ~~~~~iPvV~~~ 96 (293)
T 3l6u_A 85 AKKAGIPVFAID 96 (293)
T ss_dssp HHHTTCCEEEES
T ss_pred HHHcCCCEEEec
Confidence 2467888773
No 156
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=54.24 E-value=51 Score=27.30 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCc-EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh--------hcCCCCCEEE
Q 013701 283 LPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV--------AARTPLPVIG 353 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~-~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i--------~~~~~~pVI~ 353 (438)
...+.++.+.+...|++ ++..+. .++|. ..+++.+++.+++.+|..+-+...+..++ ..+...||+-
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~v~--~G~~~--~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEERPI--VGAPV--DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEE--CSSHH--HHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEe--cCCHH--HHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEE
Confidence 45666777778888998 776654 46553 34455557788998888875444554433 3345678887
Q ss_pred ecCC
Q 013701 354 VPVR 357 (438)
Q Consensus 354 ~p~~ 357 (438)
||..
T Consensus 156 V~~~ 159 (163)
T 1tq8_A 156 VHTT 159 (163)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7753
No 157
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=53.98 E-value=1.2e+02 Score=27.10 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=53.9
Q ss_pred CCeEEEEEecC-CC---HHHHHHHHHHHHHc-CCcEEEEEE-ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh
Q 013701 270 LPRIGIIMGSD-SD---LPVMKDAAKILTMF-SVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~iv~gs~-sD---~~~~~~~~~~L~~~-G~~~~~~v~-s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
+.+|+++.-.. ++ ......+.+.+.++ |+.+..... ..+.+++...++++.+...+++.+|+...........+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 87 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFT 87 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHH
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHH
Confidence 45777777553 22 33444555667778 888877655 34667888888888888889997776653332333333
Q ss_pred hc--CCCCCEEEec
Q 013701 344 AA--RTPLPVIGVP 355 (438)
Q Consensus 344 ~~--~~~~pVI~~p 355 (438)
.. ....|||.+-
T Consensus 88 ~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 88 DALNELGIPYIYID 101 (304)
T ss_dssp HHHHHHTCCEEEES
T ss_pred HHHHHCCCeEEEEe
Confidence 22 2357888764
No 158
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=53.93 E-value=1.3e+02 Score=27.20 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=52.6
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA- 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~- 345 (438)
..+++++.-+.++ ......+.+.+.++|+.+... ...+.++++..++++.+...+++.+|+.......+...+..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 3567677654333 233445556777889877542 34577888888888888888899777655333334444432
Q ss_pred -CCCCCEEEec
Q 013701 346 -RTPLPVIGVP 355 (438)
Q Consensus 346 -~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 83 ~~~~iPvV~~~ 93 (305)
T 3g1w_A 83 VDAGIPIVLFD 93 (305)
T ss_dssp HHTTCCEEEES
T ss_pred HHCCCcEEEEC
Confidence 2457888763
No 159
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=53.87 E-value=35 Score=31.45 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCC----cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSV----PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGM 342 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~----~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~ 342 (438)
+.+|+++. +-++ -.....+.+.|.+.|| ++...++..++++++..++++.+.+++++.+|+.. .. +...+
T Consensus 8 t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~-~~~~~ 84 (302)
T 2qh8_A 8 TAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-TP-TAQAL 84 (302)
T ss_dssp CEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES-HH-HHHHH
T ss_pred CcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-hH-HHHHH
Confidence 45677763 3333 2334455567788888 77777777888888888888888888888777653 11 11122
Q ss_pred hhcCCCCCEEEec
Q 013701 343 VAARTPLPVIGVP 355 (438)
Q Consensus 343 i~~~~~~pVI~~p 355 (438)
.......|||-+-
T Consensus 85 ~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 85 VSATKTIPIVFTA 97 (302)
T ss_dssp HHHCSSSCEEEEE
T ss_pred HhcCCCcCEEEEe
Confidence 2224567888663
No 160
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=53.53 E-value=57 Score=26.73 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
..+.++.+.+.+.|++++..+.-.++.|.+ .+++.+++.+++.+|.++.+.
T Consensus 78 ~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~--~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 78 ETLSWAVSIIRKEGAEGEEHLLVRGKEPPD--DIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSSCHHH--HHHHHHHHTTCSEEEEECCEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCHHH--HHHHHHHHcCCCEEEECCCCC
Confidence 345566677788899988765445676643 445555777899888877433
No 161
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=53.41 E-value=23 Score=34.03 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=46.0
Q ss_pred CCeEEEEEecCC----CHHHHHHHHHHHHHcCCcEEEEEEe------cCCCh-hHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 270 LPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTP-DLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 270 ~~~v~iv~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~-~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
..+|+|++-|.. +...++.+.+.|+++|+++...-.. .-+++ +|..++.+-+.+..+++++++-||.
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 90 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGM 90 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 358999986642 4578889999999999997653111 11234 3455555556777899999888875
No 162
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=53.21 E-value=47 Score=27.43 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCcEEE--EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCch--------hhhhcCCCCCEEEe
Q 013701 285 VMKDAAKILTMFSVPHEV--RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLP--------GMVAARTPLPVIGV 354 (438)
Q Consensus 285 ~~~~~~~~L~~~G~~~~~--~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~--------~~i~~~~~~pVI~~ 354 (438)
.+.++.+.+...|++++. .+. .+.|.+ .+++.+++.+++.+|..+.+...+. .-+..+...||+-|
T Consensus 79 ~l~~~~~~~~~~g~~~~~~~~~~--~g~~~~--~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 79 KLQEKAEEVKRAFRAKNVRTIIR--FGIPWD--EIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEE--EECHHH--HHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcCCceeeeeEEe--cCChHH--HHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 344555566677888776 543 344432 3444457778998888774333332 22334577899999
Q ss_pred cCC
Q 013701 355 PVR 357 (438)
Q Consensus 355 p~~ 357 (438)
|..
T Consensus 155 ~~~ 157 (170)
T 2dum_A 155 KEV 157 (170)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 163
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=53.00 E-value=82 Score=31.96 Aligned_cols=58 Identities=10% Similarity=-0.124 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeE
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v 328 (438)
..+|.|++|.-.+=-...-+++.|...|+++.+-..+... +......++.+++.|+++
T Consensus 52 ~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~g~~~ 109 (502)
T 3rss_A 52 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKK-TPDCEYNYGLYKKFGGKV 109 (502)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSC-CHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCCC-CHHHHHHHHHHHhCCCce
Confidence 4678899998888888999999999999887766555333 333344445555556554
No 164
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=52.71 E-value=23 Score=34.62 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=46.7
Q ss_pred CCeEEEEEecCC----CHHHHHHHHHHHHHcCCcEEEEEEe------cCCChh-HHHHHHHHHhhcCCeEEEEEcCCCC
Q 013701 270 LPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGAA 337 (438)
Q Consensus 270 ~~~v~iv~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~-~~~~~~~~~~~~g~~v~i~~ag~~~ 337 (438)
..+|+|++-|.. +...++.+.+.|+++|+++...-.. .-++++ |..++.+-+.+..+++++++-||.+
T Consensus 43 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGyg 121 (371)
T 3tla_A 43 GDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDN 121 (371)
T ss_dssp TCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCSC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 458999986642 4678889999999999997644111 123443 4555555567778999999888753
No 165
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=52.63 E-value=1.3e+02 Score=26.81 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
++.+|+++....++ ......+.+.+.++|+.+.. ...+.+++.-.++++.+...+++.+|...... ...+..
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~ 80 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTVQE 80 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHHHH
Confidence 45678888765444 33344455667778876544 45677787777888888888898766654322 333322
Q ss_pred --CCCCCEEEe
Q 013701 346 --RTPLPVIGV 354 (438)
Q Consensus 346 --~~~~pVI~~ 354 (438)
....|||.+
T Consensus 81 l~~~~iPvV~i 91 (276)
T 3jy6_A 81 ILHQQMPVVSV 91 (276)
T ss_dssp HHTTSSCEEEE
T ss_pred HHHCCCCEEEE
Confidence 346788876
No 166
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=52.63 E-value=94 Score=27.77 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~ 345 (438)
+.+|++++...++ ......+.+.+.++|+.+.. .....+++...+.++.+...+++.+|...... ..+...+..
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~ 84 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE 84 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh
Confidence 4578888754333 23344555667788987654 45567788777788887778899777654332 234444543
Q ss_pred CCCCCEEEec
Q 013701 346 RTPLPVIGVP 355 (438)
Q Consensus 346 ~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 85 ~~~iPvV~~~ 94 (289)
T 1dbq_A 85 YRHIPMVVMD 94 (289)
T ss_dssp TTTSCEEEEE
T ss_pred ccCCCEEEEc
Confidence 3567888763
No 167
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=52.58 E-value=42 Score=29.15 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=52.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEE---------------EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE---------------VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~---------------~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
+| ++.|..+....+...+..|..+|+++. +-+.|..|...++.+.++.+++.|++++.+..-..
T Consensus 49 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 49 SI-FVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp CE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred EE-EEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 45 555554445667777777777776532 45578888889999999999999999765544233
Q ss_pred CCchhhhhcCCCCCEEEecCCC
Q 013701 337 AHLPGMVAARTPLPVIGVPVRA 358 (438)
Q Consensus 337 ~~l~~~i~~~~~~pVI~~p~~~ 358 (438)
+.|... ..-+|-+|...
T Consensus 128 s~La~~-----ad~~l~~~~~~ 144 (200)
T 1vim_A 128 SSLAKM-----ADVVMVVKGKM 144 (200)
T ss_dssp SHHHHH-----CSEEEECCSSC
T ss_pred ChHHHh-----CCEEEEECCcc
Confidence 333332 34567777653
No 168
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=52.47 E-value=1.3e+02 Score=26.86 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=74.5
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCc-EEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~-~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
++.+|++++...++ ......+.+.+.++|+. +. +...+.+++.-.++++.+...+++-+|+.. ..+..+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~~-- 81 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALI--SFSTNSDVKKYQNAIINFENNNVDGIITSA---FTIPPN-- 81 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCCTT--
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHHHH--
Confidence 35678888865444 33455566777889987 54 346678888888888888888999777654 223222
Q ss_pred cCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcC------------CChHHHHHHHHH
Q 013701 345 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF------------GDADLRARMQQY 412 (438)
Q Consensus 345 ~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~------------~~~~~~~~~~~~ 412 (438)
.....|||.+-... . ++.++ .|..|+. .++..|++-|.. ......+|++.|
T Consensus 82 ~~~~iPvV~~~~~~--~-------------~~~~~-~V~~D~~-~~g~~a~~~L~~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 82 FHLNTPLVMYDSAN--I-------------NDDIV-RIVSNNT-KGGKESIKLLSKKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp CCCSSCEEEESCCC--C-------------CSSSE-EEEECHH-HHHHHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred HhCCCCEEEEcccc--c-------------CCCCE-EEEEChH-HHHHHHHHHHHhCCCEEEEEeCCCcCccHHHHHHHH
Confidence 23456887663210 1 11125 6665553 556666666531 133455666666
Q ss_pred HHHHH
Q 013701 413 MEDMR 417 (438)
Q Consensus 413 ~~~~~ 417 (438)
+..+.
T Consensus 145 ~~~l~ 149 (277)
T 3hs3_A 145 TAEAS 149 (277)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 169
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=52.03 E-value=1.2e+02 Score=26.29 Aligned_cols=95 Identities=12% Similarity=0.180 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEecC-----------CChhHHHHHHHHHhhcCCeEEEEEcCC-CC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAH-----------RTPDLMFSYASSAHERGIEIIIAGAGG-AA 337 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h-----------~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~ 337 (438)
++|+|++||.+.-..-..+++.+.+ +.-.+++++.... ..|+.+.++.+..++ .+.+|.+.-. ..
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~--aD~~ii~tPeYn~ 80 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEH--SDAVLAITPEYNR 80 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHT--SSEEEEECCCBTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHh--CCcEEEechhhcc
Confidence 4688899986554333333333332 1113455554432 346777777776654 6766666622 22
Q ss_pred Cchhhhh-------------cCCCCCEEEecCCCCCCCChhhH
Q 013701 338 HLPGMVA-------------ARTPLPVIGVPVRASALDGLDSL 367 (438)
Q Consensus 338 ~l~~~i~-------------~~~~~pVI~~p~~~~~~~g~~~l 367 (438)
..|+++. ....+||.-+-.+.+...|..++
T Consensus 81 s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~ 123 (190)
T 3u7r_A 81 SYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQ 123 (190)
T ss_dssp BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHH
T ss_pred cCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHH
Confidence 3343332 23557776665544445565443
No 170
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=51.98 E-value=33 Score=32.71 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCeEEEEEecC----CCHHHHHHHHHHHHHcCCcEEEEEEe------cCCChh-HHHHHHHHHhhcCCeEEEEEcCCCC-
Q 013701 270 LPRIGIIMGSD----SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGAA- 337 (438)
Q Consensus 270 ~~~v~iv~gs~----sD~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~-~~~~~~~~~~~~g~~v~i~~ag~~~- 337 (438)
..+|+|++-|. .+...++.+.+.|+++|+++...-.- .-++++ |..++.+.+.+..++.++++-||..
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 91 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNS 91 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhH
Confidence 34899997653 35678888999999999997643110 112343 4555666667888999999888763
Q ss_pred -Cch-----hhhhcCCCCCEEEe
Q 013701 338 -HLP-----GMVAARTPLPVIGV 354 (438)
Q Consensus 338 -~l~-----~~i~~~~~~pVI~~ 354 (438)
.|. +.|+. ..++++|-
T Consensus 92 ~rlL~~LD~~~i~~-~PK~~~Gy 113 (327)
T 4h1h_A 92 NQLLPYLDYDLISE-NPKILCGF 113 (327)
T ss_dssp GGGGGGCCHHHHHH-SCCEEEEC
T ss_pred HHHhhhcchhhhcc-CCeEEEec
Confidence 333 34544 35666664
No 171
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.69 E-value=1.3e+02 Score=26.84 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=54.8
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh-
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA- 344 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~- 344 (438)
++.+|+++..+.++ ......+.+.+.++|+.+.. ...+.+++...++++.+...+++.+|...... ....+.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLL--ANTAEDIVREREAVGQFFERRVDGLILAPSEG--EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--ChHHHHH
Confidence 35678888866555 34455566778889987654 45677888888888888888999777654322 222332
Q ss_pred -cCCCCCEEEec
Q 013701 345 -ARTPLPVIGVP 355 (438)
Q Consensus 345 -~~~~~pVI~~p 355 (438)
.....|||.+-
T Consensus 83 ~~~~~iPvV~~~ 94 (291)
T 3egc_A 83 ELPKTFPIVAVN 94 (291)
T ss_dssp SSCTTSCEEEES
T ss_pred hhccCCCEEEEe
Confidence 23467888763
No 172
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=51.22 E-value=49 Score=27.49 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchh--------hhhcCCCCCEEEec
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPG--------MVAARTPLPVIGVP 355 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~--------~i~~~~~~pVI~~p 355 (438)
..+.++.+.+...|++++..+. ++.|. ..+++.+++.+++.+|..+-+...+.. -+..+...||+-||
T Consensus 87 ~~l~~~~~~~~~~g~~~~~~v~--~G~~~--~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 87 HLLEFFVNKCHEIGVGCEAWIK--TGDPK--DVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEE--ESCHH--HHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 3455556667778988776654 45553 344555577789988877743333332 23345678888888
Q ss_pred CC
Q 013701 356 VR 357 (438)
Q Consensus 356 ~~ 357 (438)
..
T Consensus 163 ~~ 164 (175)
T 2gm3_A 163 RN 164 (175)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 173
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=51.15 E-value=26 Score=28.07 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCC-cEEEEEEecCCChhHHHHHHH-HHhhcCCeEEEEEcCCCCCch
Q 013701 284 PVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFSYAS-SAHERGIEIIIAGAGGAAHLP 340 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~-~~~~~v~s~h~~~~~~~~~~~-~~~~~g~~v~i~~ag~~~~l~ 340 (438)
..+.++.+.+...|+ +++..+. ++.|. ..+++ .+++.+++.+|.++.+...+.
T Consensus 69 ~~l~~~~~~~~~~g~~~~~~~~~--~g~~~--~~I~~~~a~~~~~dliV~G~~~~~~~~ 123 (146)
T 3s3t_A 69 DAMRQRQQFVATTSAPNLKTEIS--YGIPK--HTIEDYAKQHPEIDLIVLGATGTNSPH 123 (146)
T ss_dssp HHHHHHHHHHTTSSCCCCEEEEE--EECHH--HHHHHHHHHSTTCCEEEEESCCSSCTT
T ss_pred HHHHHHHHHHHhcCCcceEEEEe--cCChH--HHHHHHHHhhcCCCEEEECCCCCCCcc
Confidence 344555666667788 7766654 34443 33455 456778998888774443333
No 174
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=51.12 E-value=1.7e+02 Score=27.93 Aligned_cols=130 Identities=8% Similarity=0.045 Sum_probs=69.5
Q ss_pred CeEEEEEec-CCCHH----HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc-CCCCCchhhhh
Q 013701 271 PRIGIIMGS-DSDLP----VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA-GGAAHLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs-~sD~~----~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a-g~~~~l~~~i~ 344 (438)
.+|++++.+ -+|.+ ..+.+.+..+++|-+++..++......++..+.++.+.+.|++++|+.. +....+..+..
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~ 106 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAK 106 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHT
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Confidence 467777743 23422 2333444556788445555544444455567788888888999777653 22333444434
Q ss_pred cCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC---cchHHHHHHHHH---------cCCChHHHHHHHHH
Q 013701 345 ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN---ATNAGLLAVRML---------GFGDADLRARMQQY 412 (438)
Q Consensus 345 ~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~---~~~Aa~~a~~il---------~~~~~~~~~~~~~~ 412 (438)
..-..|++.|-. ... .++ +.++..++ ++-|+.+|..+. +...|.+.+++..|
T Consensus 107 ~~Pdv~fv~id~---~~~-----------~~N--v~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF 170 (356)
T 3s99_A 107 KFPDVKFEHATG---YKT-----------ADN--MSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSF 170 (356)
T ss_dssp TCTTSEEEEESC---CCC-----------BTT--EEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHH
T ss_pred HCCCCEEEEEec---ccc-----------CCc--EEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHH
Confidence 444566776621 110 123 55555443 233344333331 23467888788888
Q ss_pred HHHH
Q 013701 413 MEDM 416 (438)
Q Consensus 413 ~~~~ 416 (438)
++-.
T Consensus 171 ~~G~ 174 (356)
T 3s99_A 171 MLGA 174 (356)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 175
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=51.10 E-value=32 Score=32.27 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC----CCCCEEEecCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR----TPLPVIGVPVRA 358 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~----~~~pVI~~p~~~ 358 (438)
.....++...|...|++++.... ..+....++.+++.+ +++++++ .|+.+.+-.++.+. +..|+--+|.++
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t---~~~~~a~~~~~~~~~-~~d~vv~-~GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHT---KEQGDATKYCQEFAS-KVDLIIV-FGGDGTVFECTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEC---CSTTHHHHHHHHHTT-TCSEEEE-EECHHHHHHHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEc---cCcchHHHHHHHhhc-CCCEEEE-EccchHHHHHHHHHhhCCCCCcEEEecCCc
Confidence 46677888999999998876543 234455566666543 7776555 46776666666553 456777788764
No 176
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=50.92 E-value=1.6e+02 Score=27.46 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~~ 345 (438)
+.+|+++....++ ...+..+.+.+.+.|+.+... ....+++...++++.+...+++-+|...... ......+.
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~- 142 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT--NSNEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQ- 142 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE--ECTTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHH-
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHH-
Confidence 3568888754333 234455556778899987553 4466777777788888788899666543221 11122222
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||-+
T Consensus 143 ~~~iPvV~i 151 (348)
T 3bil_A 143 KQGMPVVLV 151 (348)
T ss_dssp HC-CCEEEE
T ss_pred hCCCCEEEE
Confidence 245788876
No 177
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=50.61 E-value=1.6e+02 Score=27.30 Aligned_cols=123 Identities=13% Similarity=0.020 Sum_probs=71.0
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
+..|+++....++ ......+.+.+.+.|+.+... ..+. ++.-.++++.+...+++-+|.... +..+ ..
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~----~~~~--~~ 134 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV----VGSI--AP 134 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC----TTCC--C-
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch----HHHH--hh
Confidence 4678888865444 244555667788899876554 4455 777778888888889997776542 1111 23
Q ss_pred CCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcC-------------CChHHHHHHHHHH
Q 013701 347 TPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF-------------GDADLRARMQQYM 413 (438)
Q Consensus 347 ~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~-------------~~~~~~~~~~~~~ 413 (438)
...|||.+=.. .. ..+++ .|.+|+ ..++..|++-|.- ......+|++.|+
T Consensus 135 ~~iPvV~~~~~---~~-----------~~~~~--~V~~D~-~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 135 EGIPMVQLTRG---EL-----------GPGFP--RVLCDD-EAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp CCSCEEEECC------------------CCSC--EEEECH-HHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCEEEECcc---CC-----------CCCCC--EEEECh-HHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 45688766221 00 12233 444444 4566666665432 2345567777777
Q ss_pred HHHHH
Q 013701 414 EDMRD 418 (438)
Q Consensus 414 ~~~~~ 418 (438)
..+.+
T Consensus 198 ~al~~ 202 (333)
T 3jvd_A 198 HAASI 202 (333)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 178
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=50.35 E-value=1.4e+02 Score=26.61 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=50.8
Q ss_pred CCeEEEEEecCC--C---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013701 270 LPRIGIIMGSDS--D---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~s--D---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
+.+|++++...+ + ......+.+.+.++|+.+.......+.++++..+.++.+...+++.+|........+...+.
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 467878775433 3 22334455667788987654322225677777778888777889977766543333333333
Q ss_pred c--CCCCCEEEe
Q 013701 345 A--RTPLPVIGV 354 (438)
Q Consensus 345 ~--~~~~pVI~~ 354 (438)
. ....|||.+
T Consensus 85 ~~~~~~iPvV~~ 96 (289)
T 3brs_A 85 EIKDAGIKLIVI 96 (289)
T ss_dssp TTGGGTCEEEEE
T ss_pred HHHHCCCcEEEE
Confidence 2 235688776
No 179
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=50.29 E-value=78 Score=28.56 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCC--ChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHR--TPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~--~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
+.+|++++-+.++ ......+.+.+.++|+.+.. ...+. +++.-.+.++.+...+++.+|+.......+...+.
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRV--LEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEE--EECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEE--EcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 4578888765544 23344555677788987654 45566 78888888888888899977766533332222222
Q ss_pred cC-CCCCEEEe
Q 013701 345 AR-TPLPVIGV 354 (438)
Q Consensus 345 ~~-~~~pVI~~ 354 (438)
.. ...|||.+
T Consensus 83 ~~~~~iPvV~~ 93 (304)
T 3o1i_D 83 SWVGNTPVFAT 93 (304)
T ss_dssp HHTTTSCEEEC
T ss_pred HHcCCCCEEEe
Confidence 11 56788876
No 180
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=50.18 E-value=57 Score=29.75 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=50.8
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.++++.+...|..+....+- -.+++.+.++
T Consensus 26 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 91 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAAR----------GIAV-YGC--ARDAKNVSAAVDGLRAAGHDVDGSSCD-VTSTDEVHAA 91 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHH
Confidence 3667777654333444444331 2345 444 346777888888888888776544333 3456667776
Q ss_pred HHHHhhc--CCeEEEEEcCCC
Q 013701 318 ASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~~--g~~v~i~~ag~~ 336 (438)
+++..+. .++++|-.||..
T Consensus 92 ~~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 92 VAAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHHcCCCcEEEECCCCC
Confidence 6654332 688899888754
No 181
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=50.12 E-value=55 Score=29.51 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+.+.+.++.+.+...|..+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 43 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 99 (264)
T 3ucx_A 43 RTVERLEDVAKQVTDTGRRALSVGTD-ITDDAQVAHLVDETMKAYGRVDVVINNAFRV 99 (264)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHTSCCSEEEECCCSC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 45677777777777777665443222 44566666666554332 577888888653
No 182
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=49.57 E-value=37 Score=32.52 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=60.7
Q ss_pred CCeEEEEEecCC----CHHHHHHHHHHHHHcCCcEEEEEEe------cCCChh-HHHHHHHHHhhcCCeEEEEEcCCCC-
Q 013701 270 LPRIGIIMGSDS----DLPVMKDAAKILTMFSVPHEVRIVS------AHRTPD-LMFSYASSAHERGIEIIIAGAGGAA- 337 (438)
Q Consensus 270 ~~~v~iv~gs~s----D~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~-~~~~~~~~~~~~g~~v~i~~ag~~~- 337 (438)
..+|+|++-|.. +...++.+.+.|+++|+++...-.. .-++++ |..++.+-+.+..+++++++-|+.+
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 91 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNS 91 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccccH
Confidence 458999976543 4788899999999999997654211 113443 4455555567778999999888753
Q ss_pred -Cchh-----hhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCC
Q 013701 338 -HLPG-----MVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRG 376 (438)
Q Consensus 338 -~l~~-----~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~g 376 (438)
.|.+ .|+. ..++++|- +...+|+..+.--.|
T Consensus 92 ~rlL~~lD~~~i~~-~PK~~~Gy-------SDiTaL~~al~~~~G 128 (331)
T 4e5s_A 92 NGLLKYLDYDLIRE-NPKFFCGY-------SDITALNNAIYTKTG 128 (331)
T ss_dssp GGGGGGCCHHHHHT-SCCEEEEC-------GGGHHHHHHHHHHHC
T ss_pred HHHHhhcChhHHHh-CCeEEEEe-------cchHHHHHHHHHhhC
Confidence 3333 3332 35566653 244555544443345
No 183
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=49.10 E-value=51 Score=29.59 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh-cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~-~g~~v~i~~ag~~ 336 (438)
+.+.+.++++.+...|-++..-.+- -.+++.+.++++...+ .+++++|-.||..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~g~id~lv~nAg~~ 94 (252)
T 3h7a_A 40 NGEKLAPLVAEIEAAGGRIVARSLD-ARNEDEVTAFLNAADAHAPLEVTIFNVGAN 94 (252)
T ss_dssp SGGGGHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECc-CCCHHHHHHHHHHHHhhCCceEEEECCCcC
Confidence 3445556666666666554433222 3445666666655433 3567777777643
No 184
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=48.02 E-value=78 Score=27.07 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=34.1
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-+.|..|....+.+.++.++++|++++........-|...+ .....+|-+|..
T Consensus 116 vvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~--~~ad~~l~~~~~ 170 (199)
T 1x92_A 116 VLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLL--LPEDVEIRVPSK 170 (199)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHC--CTTCEEEECSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhcc--ccCCEEEEeCCC
Confidence 3556788888888899999899999986544332222233221 014457777753
No 185
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=47.15 E-value=72 Score=28.30 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
.+.+...++.+.+...|-.+..-.+- -.+++.+.+++++..+. +++++|-.||.
T Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 41 INAEAAEAVAKQIVADGGTAISVAVD-VSDPESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 35666677777777666554333222 34556666666544322 57788877775
No 186
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=46.74 E-value=70 Score=26.90 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=35.2
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-+.|..|...++.+.++.++++|++++.+.....+.|... ..-+|-+|..
T Consensus 99 ~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~-----ad~~l~~~~~ 150 (183)
T 2xhz_A 99 VVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARA-----ADVHLCVKVA 150 (183)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHH-----SSEEEECCCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHh-----CCEEEEeCCC
Confidence 355678888888999999999999998765554333334333 3356777753
No 187
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=46.50 E-value=70 Score=31.67 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.++..++.....+.+++..|.+.|+.++.. ++.-..+.+-++.+...|++..+++
T Consensus 367 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~----~~~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 367 TQVLVASAQKKLLEERLKLVSELWDAGIKAELL----YKKNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CCEEEECSSSSCHHHHHHHHHHHHHTTCCEECC----SCSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE----eCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 357677777777899999999999999998765 3222234455566677899955554
No 188
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=46.42 E-value=97 Score=27.95 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=48.1
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh--c
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--A 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~ 345 (438)
++|+++....++ ......+.+.+.++|+ +.+.+...+.+++...++++.+...+++.+|+...........+. .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 81 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 81 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHH
Confidence 456677644333 2334445566677887 233444556777777777877777788877765432222222222 1
Q ss_pred CCCCCEEEec
Q 013701 346 RTPLPVIGVP 355 (438)
Q Consensus 346 ~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 82 ~~~iPvV~~~ 91 (309)
T 2fvy_A 82 GQNVPVVFFN 91 (309)
T ss_dssp TTTCCEEEES
T ss_pred HCCCcEEEec
Confidence 2457888763
No 189
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=46.42 E-value=50 Score=28.50 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=48.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEE--------------------EEEEecCCChhHHHHHHHHHhhcCCeEEEE
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHE--------------------VRIVSAHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~--------------------~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+| ++.|..+....+...+..|..+|+++. +-+.|..|...++.+.++.++++|++++..
T Consensus 47 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~I 125 (201)
T 3fxa_A 47 KI-VVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGV 125 (201)
T ss_dssp CE-EEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEE
T ss_pred cE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 44 555544446666666666666666532 345677788888888888888888886655
Q ss_pred EcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 332 GAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 332 ~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
..-....|... ..-+|-+|..
T Consensus 126 T~~~~s~l~~~-----ad~~l~~~~~ 146 (201)
T 3fxa_A 126 TENPDSVIAKE-----ADIFFPVSVS 146 (201)
T ss_dssp ESCTTSHHHHH-----CSEEEECCCS
T ss_pred ECCCCChhHHh-----CCEEEEcCCC
Confidence 44333233332 3456666653
No 190
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=45.63 E-value=1.7e+02 Score=26.24 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=69.3
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
+..|+++. ..++ ......+.+.+.++|+.+.... .+..++ -.+.++.+...+++-+|+.... .......+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 87 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSA--VAPSRA-EKVAVQALMRERCEAAILLGTRFDTDELGALAD 87 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEE--EBTTBC-HHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHT
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEe--CCCCHH-HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHc
Confidence 46788888 5444 2344555677788998765543 344444 5667777777889976666532 2222223322
Q ss_pred CCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcC------------CChHHHHHHHHHH
Q 013701 346 RTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGF------------GDADLRARMQQYM 413 (438)
Q Consensus 346 ~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~------------~~~~~~~~~~~~~ 413 (438)
..|||.+=.. .. ..+ +..|.+|+. .++..|++-|.- .+....+|++.|+
T Consensus 88 --~iPvV~i~~~---~~-----------~~~--~~~V~~D~~-~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 148 (289)
T 3k9c_A 88 --RVPALVVARA---SG-----------LPG--VGAVRGDDV-AGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFL 148 (289)
T ss_dssp --TSCEEEESSC---CS-----------STT--SEEEEECHH-HHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHH
T ss_pred --CCCEEEEcCC---CC-----------CCC--CCEEEeChH-HHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHH
Confidence 6788876321 11 122 445555554 455555554321 1224567777777
Q ss_pred HHHHH
Q 013701 414 EDMRD 418 (438)
Q Consensus 414 ~~~~~ 418 (438)
..+.+
T Consensus 149 ~al~~ 153 (289)
T 3k9c_A 149 AAMDR 153 (289)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 191
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=45.29 E-value=1.1e+02 Score=28.57 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
+..|+++....++ ...+..+.+.+.+.|+.+.. ...+.+++...++++.+...+++-+|..... .......+.
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~- 146 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQ- 146 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHH-
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHH-
Confidence 4578888765444 23455566777889987654 3557788888888888888899966665422 211222222
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||-+
T Consensus 147 ~~~iPvV~i 155 (355)
T 3e3m_A 147 RASIPIVEI 155 (355)
T ss_dssp HCCSCEEEE
T ss_pred hCCCCEEEE
Confidence 346788876
No 192
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.63 E-value=1e+02 Score=23.53 Aligned_cols=76 Identities=12% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh
Q 013701 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~ 323 (438)
.|.++........+..-. .-++.|++ .|+..+.+.......+||++..-.- ...-.++.+|-+..++
T Consensus 33 ndsdelkkemkklaeekn--------fekiliis---ndkqllkemlelisklgykvflllq--dqdeneleefkrkies 99 (134)
T 2lci_A 33 NDSDELKKEMKKLAEEKN--------FEKILIIS---NDKQLLKEMLELISKLGYKVFLLLQ--DQDENELEEFKRKIES 99 (134)
T ss_dssp CSHHHHHHHHHHHHHCCS--------CCCEEEEE---SCHHHHHHHHHHHHHHTCCEEEEEE--CSCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhhcC--------cceEEEEc---CcHHHHHHHHHHHHHhCceeEEEee--cCchhHHHHHHHHHHh
Confidence 445566666666655432 23565665 6899999999999999999876532 5567788899988999
Q ss_pred cCCeEEEEE
Q 013701 324 RGIEIIIAG 332 (438)
Q Consensus 324 ~g~~v~i~~ 332 (438)
.|+.|.-+.
T Consensus 100 qgyevrkvt 108 (134)
T 2lci_A 100 QGYEVRKVT 108 (134)
T ss_dssp TTCEEEEEC
T ss_pred CCeeeeecC
Confidence 999887653
No 193
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=43.71 E-value=62 Score=28.57 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEE--------------------EEEEecCCChhHHHHHHHHHhh--cCCeE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHE--------------------VRIVSAHRTPDLMFSYASSAHE--RGIEI 328 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~--------------------~~v~s~h~~~~~~~~~~~~~~~--~g~~v 328 (438)
++| ++.|..+....+...+..|..+|+++. +-+.|..|...++.+.++.+++ +|+++
T Consensus 60 ~~I-~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~v 138 (220)
T 3etn_A 60 GKL-VTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKF 138 (220)
T ss_dssp CCE-EEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEE
T ss_pred CEE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 445 566655556777777777777776532 3456777778888888888888 89886
Q ss_pred EEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 329 IIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 329 ~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
+.+.......|... ..-+|-+|..
T Consensus 139 I~IT~~~~s~La~~-----aD~~l~~~~~ 162 (220)
T 3etn_A 139 IVITGNPDSPLASE-----SDVCLSTGHP 162 (220)
T ss_dssp EEEESCTTSHHHHH-----SSEEEECCCC
T ss_pred EEEECCCCChhHHh-----CCEEEEcCCC
Confidence 65544333333332 2346666653
No 194
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=43.56 E-value=1.9e+02 Score=26.22 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=47.2
Q ss_pred eEEEEEecCCC--HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--CC
Q 013701 272 RIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--RT 347 (438)
Q Consensus 272 ~v~iv~gs~sD--~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~~ 347 (438)
+|+++....++ ......+.+.+.++|+.+..... .+.++++..+.++.+...+++.+|+.......+...+.. ..
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ 81 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEM 81 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHT
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC
Confidence 45565533222 22333445567778987654321 266777777788877778888777655333333333321 24
Q ss_pred CCCEEEe
Q 013701 348 PLPVIGV 354 (438)
Q Consensus 348 ~~pVI~~ 354 (438)
..|||.+
T Consensus 82 ~iPvV~~ 88 (313)
T 2h3h_A 82 GIPVVTL 88 (313)
T ss_dssp TCCEEEE
T ss_pred CCeEEEe
Confidence 5788876
No 195
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=43.32 E-value=1.8e+02 Score=26.05 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCeEEEEEe-----cCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCc
Q 013701 269 VLPRIGIIMG-----SDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHL 339 (438)
Q Consensus 269 ~~~~v~iv~g-----s~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l 339 (438)
++..|+++.. ..++ ...+..+.+.+.+.|+.+.. ...+.+++.-.++++.+...+++-+|..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 83 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQT--TVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPI 83 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEE--CCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHH
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEE--EcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHH
Confidence 3467888872 2222 34455666777888987643 3456666666777877888889966665322 2222
Q ss_pred hhhhhcCCCCCEEEe
Q 013701 340 PGMVAARTPLPVIGV 354 (438)
Q Consensus 340 ~~~i~~~~~~pVI~~ 354 (438)
...+. ....|||-+
T Consensus 84 ~~~l~-~~~iPvV~i 97 (295)
T 3hcw_A 84 KQMLI-DESMPFIVI 97 (295)
T ss_dssp HHHHH-HTTCCEEEE
T ss_pred HHHHH-hCCCCEEEE
Confidence 22222 245788876
No 196
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=43.20 E-value=81 Score=28.01 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.+.++.+.+...|..+..-.+- -.+++.+.+++++..+ .+++++|-.||..
T Consensus 39 r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 95 (247)
T 2jah_A 39 RRVEKLRALGDELTAAGAKVHVLELD-VADRQGVDAAVASTVEALGGLDILVNNAGIM 95 (247)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 34566666777776666554433222 3456666666655432 2688888888753
No 197
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=43.11 E-value=73 Score=29.45 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=52.0
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+.+.+.. ..+| ++. +.+.+.+.++.+.+...|..+..-.+- -.+++.+.++
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 98 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARR----------GARL-VLS--DVDQPALEQAVNGLRGQGFDAHGVVCD-VRHLDEMVRL 98 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHH
Confidence 3677777754444444444431 2245 444 346777888888888888776544333 3456667777
Q ss_pred HHHHhhc--CCeEEEEEcCCC
Q 013701 318 ASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~~--g~~v~i~~ag~~ 336 (438)
+++..+. +++++|-.||..
T Consensus 99 ~~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 99 ADEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHhCCCCCEEEECCCcC
Confidence 7654332 688999998754
No 198
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.04 E-value=1.7e+02 Score=25.71 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=47.0
Q ss_pred eEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcC-CeEEEEEcCCCCCchhhhhc--
Q 013701 272 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG-IEIIIAGAGGAAHLPGMVAA-- 345 (438)
Q Consensus 272 ~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g-~~v~i~~ag~~~~l~~~i~~-- 345 (438)
+|+++.-+.++ ......+.+.+.++|+.+.......+.++++-.+.++.+...+ ++.+|...-........+..
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~ 81 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYR 81 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 35555543322 3344555667777887765543224567777777777777777 88666654222233333322
Q ss_pred CCCCCEEEec
Q 013701 346 RTPLPVIGVP 355 (438)
Q Consensus 346 ~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 82 ~~~ipvV~~~ 91 (276)
T 3ksm_A 82 ARNIPVLVVD 91 (276)
T ss_dssp HTTCCEEEES
T ss_pred HCCCcEEEEe
Confidence 2356777763
No 199
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=42.84 E-value=95 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+...++.+.+...|..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 95 (262)
T 1zem_A 40 NREALEKAEASVREKGVEARSYVCD-VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQ 95 (262)
T ss_dssp CHHHHHHHHHHHHTTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3455555556665555544332222 2345555555544322 2577777777643
No 200
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=42.24 E-value=74 Score=28.03 Aligned_cols=64 Identities=5% Similarity=-0.207 Sum_probs=36.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe-cC-------CChhHHHHHHHHHhhc--CCeE-EEEEcCCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-AH-------RTPDLMFSYASSAHER--GIEI-IIAGAGGA 336 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s-~h-------~~~~~~~~~~~~~~~~--g~~v-~i~~ag~~ 336 (438)
++|+|++ +.....-....+.|...|+++..-... .. -+++.+.+.++++... |+++ +..+++++
T Consensus 109 ~rvgvlt--~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~l~ 183 (223)
T 2dgd_A 109 RKLWIGT--PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALS 183 (223)
T ss_dssp CEEEEEE--SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSC
T ss_pred CeEEEEe--CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEeCCccc
Confidence 5788886 333444445666778889885332211 11 2355666677666666 7774 44455444
No 201
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=41.53 E-value=28 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=29.7
Q ss_pred Cchhhhhc--CCCCCEEEecCC-CCCCCChhhHHHhh-cCCCCCceEEEEeCCcchHHHHHHHH
Q 013701 338 HLPGMVAA--RTPLPVIGVPVR-ASALDGLDSLLSIV-QMPRGVPVATVAINNATNAGLLAVRM 397 (438)
Q Consensus 338 ~l~~~i~~--~~~~pVI~~p~~-~~~~~g~~~l~s~~-~~~~gip~~tv~i~~~~~Aa~~a~~i 397 (438)
+|-.+|.. -.+..|||+|++ .+....-+.|.... ....+||++|+. +.--+.++.|+-+
T Consensus 148 ~Lleli~~g~~~PalVIG~PVGFVgAaESKe~L~~~~~~~~~~vP~I~~~-GrkGGS~vAaAiv 210 (231)
T 2afr_A 148 EIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTM-GRKGGSTIAVAIL 210 (231)
T ss_dssp HHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEEEEC-SSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEEeCCCcccHHHHHHHHHhcccccCCCCCEEEEe-CCCCCHHHHHHHH
Confidence 45666654 356679999996 22111223332210 011269999875 3222444444433
No 202
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=41.27 E-value=74 Score=28.87 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+..=-..-+...+.. ..+| ++. +.+.+.+.++++.+...|..+....+- -.+++.+.+++
T Consensus 7 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 72 (264)
T 3tfo_A 7 ILITGASGGIGEGIARELGVA----------GAKI-LLG--ARRQARIEAIATEIRDAGGTALAQVLD-VTDRHSVAAFA 72 (264)
T ss_dssp EEESSTTSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHH
T ss_pred EEEeCCccHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 666776644333344443331 2345 343 245677778888888877665443322 34566677666
Q ss_pred HHHhh--cCCeEEEEEcCCC
Q 013701 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 73 ~~~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 73 QAAVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 55433 2688888888754
No 203
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=41.13 E-value=75 Score=28.06 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
+.....++...+...|.++..-.+. -.+++.+.+++++..+. +++++|-.||..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 38 SQASAEKFENSMKEKGFKARGLVLN-ISDIESIQNFFAEIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHTTCCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4555666666666666665433222 34556666666554332 466777777643
No 204
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=41.10 E-value=76 Score=29.98 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC------CCCCEEEecCC
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR------TPLPVIGVPVR 357 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~------~~~pVI~~p~~ 357 (438)
....++.+.|.+.|++++..... .+....++.+++...+++++|+ .||.+.+-.++.+. +..|+-.+|.+
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~---~~~~~~~~~~~~~~~~~d~vvv-~GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTW---EKGDAARYVEEARKFGVATVIA-GGGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECC---STTHHHHHHHHHHHHTCSEEEE-EESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred chHHHHHHHHHHcCCcEEEEEec---CcchHHHHHHHHHhcCCCEEEE-EccchHHHHHHHHHhhcccCCCCeEEEecCc
Confidence 56678888999999988765432 1333445555544456776655 46776666666553 45677778876
Q ss_pred C
Q 013701 358 A 358 (438)
Q Consensus 358 ~ 358 (438)
+
T Consensus 120 t 120 (332)
T 2bon_A 120 T 120 (332)
T ss_dssp S
T ss_pred C
Confidence 4
No 205
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=41.10 E-value=89 Score=27.96 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+.+...++.+.+...|.++..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 44 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 44 LKSEGAEAVAAAIRQAGGKAIGLECN-VTDEQHREAVIKAALDQFGKITVLVNNAGGG 100 (256)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 34566666777777766654433222 34556666665544322 577888777654
No 206
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=40.65 E-value=1e+02 Score=28.25 Aligned_cols=81 Identities=10% Similarity=0.102 Sum_probs=45.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe-c-------CCChhHHHHHHHHHhhcCCeEEE-E-EcCCCC-Cc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS-A-------HRTPDLMFSYASSAHERGIEIII-A-GAGGAA-HL 339 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s-~-------h~~~~~~~~~~~~~~~~g~~v~i-~-~ag~~~-~l 339 (438)
++|+|++ +.....-....+.|...|+++..-... . .-+++.+.+.++++...|++++| . +.++.. .+
T Consensus 147 ~rvgvlt--p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~ 224 (273)
T 2xed_A 147 QRVALVT--PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMPSLPL 224 (273)
T ss_dssp CEEEEEE--CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSCCTTH
T ss_pred CeEEEEc--CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcchHHh
Confidence 5788886 333444556667788889885332211 1 22466677778777777888544 4 455553 23
Q ss_pred hhhhhcCCCCCEEE
Q 013701 340 PGMVAARTPLPVIG 353 (438)
Q Consensus 340 ~~~i~~~~~~pVI~ 353 (438)
..-+...+.+|||-
T Consensus 225 ~~~le~~lg~PVid 238 (273)
T 2xed_A 225 VETAEREFGIPVLS 238 (273)
T ss_dssp HHHHHHHHSSCEEE
T ss_pred HHHHHHHhCCCEEc
Confidence 33333333456654
No 207
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=40.55 E-value=97 Score=27.65 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh---cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE---RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~---~g~~v~i~~ag~~ 336 (438)
+.+...++.+.+...|..+..-.+- -.+++.+.+++++..+ .+++++|-.||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 42 NQKELNDCLTQWRSKGFKVEASVCD-LSSRSERQELMNTVANHFHGKLNILVNNAGIV 98 (260)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 4555566666666666554332222 3456666666654432 3577888888743
No 208
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=40.13 E-value=89 Score=28.55 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=48.1
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.+++..+...|..+..-.+- -.+++.+.+++
T Consensus 31 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 96 (283)
T 3v8b_A 31 ALITGAGSGIGRATALALAAD----------GVTV-GAL--GRTRTEVEEVADEIVGAGGQAIALEAD-VSDELQMRNAV 96 (283)
T ss_dssp EEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHTTTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHH
Confidence 566666644333334433331 2245 344 245677778888877777665443322 34566677766
Q ss_pred HHHhh--cCCeEEEEEcCCC
Q 013701 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 97 ~~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 97 RDLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 55433 2688888888754
No 209
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=40.10 E-value=93 Score=28.08 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=45.6
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.++.+.+...|..+..-.+- -.+++.+.+++
T Consensus 24 vlVTGas~gIG~aia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 89 (273)
T 1ae1_A 24 ALVTGGSKGIGYAIVEELAGL----------GARV-YTC--SRNEKELDECLEIWREKGLNVEGSVCD-LLSRTERDKLM 89 (273)
T ss_dssp EEEESCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCcchHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHH
Confidence 666666644333344443331 1244 333 234566666667776666654433222 34566666666
Q ss_pred HHHhh---cCCeEEEEEcCCC
Q 013701 319 SSAHE---RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~---~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 90 QTVAHVFDGKLNILVNNAGVV 110 (273)
T ss_dssp HHHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCcEEEECCCCC
Confidence 55433 3588888888753
No 210
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=39.72 E-value=80 Score=28.77 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+...++.+.+...|.++..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 66 SDALQVVADEIAGVGGKALPIRCD-VTQPDQVRGMLDQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp GGGGHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 344566666666666554332222 34566666666554322 577888777643
No 211
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=39.65 E-value=2.1e+02 Score=25.65 Aligned_cols=83 Identities=7% Similarity=-0.007 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCCC---H-HHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh
Q 013701 269 VLPRIGIIMGSDSD---L-PVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~-~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~ 344 (438)
++..|++++-..++ . .....+.+.+.++|+.+.. ...+.+++.-.++++.+...+++-+|............+
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~- 88 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES- 88 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC-
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH-
Confidence 34678888765433 2 6777888899999987654 355778888888888888889996555432111111111
Q ss_pred cCCCCCEEEe
Q 013701 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVI~~ 354 (438)
.....|||.+
T Consensus 89 ~~~~iPvV~~ 98 (301)
T 3miz_A 89 GDVSIPTVMI 98 (301)
T ss_dssp TTCCCCEEEE
T ss_pred HhCCCCEEEE
Confidence 2345688765
No 212
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=39.57 E-value=1.1e+02 Score=26.53 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=6.3
Q ss_pred HHHHHHHHHHcCCc
Q 013701 286 MKDAAKILTMFSVP 299 (438)
Q Consensus 286 ~~~~~~~L~~~G~~ 299 (438)
-..+++.|.+.|++
T Consensus 15 G~~ia~~l~~~G~~ 28 (235)
T 3l77_A 15 GEAIARALARDGYA 28 (235)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCE
Confidence 34444444444444
No 213
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.46 E-value=2.1e+02 Score=25.55 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
++.+|+++.-..++ ......+.+.+.++|+.+.. ...+.+++...++++.+...+++.+|........ ...+..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~~ 95 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HPFYQR 95 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-CHHHHT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-HHHHHH
Confidence 34678888754443 23444555677789987653 4556778777788888878889977765432222 122222
Q ss_pred --CCCCCEEEe
Q 013701 346 --RTPLPVIGV 354 (438)
Q Consensus 346 --~~~~pVI~~ 354 (438)
....|||.+
T Consensus 96 ~~~~~iPvV~~ 106 (293)
T 2iks_A 96 WANDPFPIVAL 106 (293)
T ss_dssp TTTSSSCEEEE
T ss_pred HHhCCCCEEEE
Confidence 245788876
No 214
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=39.42 E-value=2.1e+02 Score=25.62 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=50.6
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecC--CChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAH--RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h--~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
.+|++++.+.++ ......+.+.++++|+.+... ... .++++-.+.++.+...+++.+|+.......+...+..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQIL--APPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR 81 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEE--CCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEE--CCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 467777655433 223344456677788776544 334 5788888888888888899777655333444444432
Q ss_pred --CCCCCEEEec
Q 013701 346 --RTPLPVIGVP 355 (438)
Q Consensus 346 --~~~~pVI~~p 355 (438)
....|||.+=
T Consensus 82 ~~~~giPvV~~~ 93 (297)
T 3rot_A 82 ANKLNIPVIAVD 93 (297)
T ss_dssp HHHHTCCEEEES
T ss_pred HHHCCCCEEEEc
Confidence 2356888763
No 215
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=39.39 E-value=66 Score=30.42 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHcCCcEEEEEEe------cCCChhH-HHHHHHHHhhcCCeEEEEEcCCCC--Cc
Q 013701 270 LPRIGIIMGSD-SDLPVMKDAAKILTMFSVPHEVRIVS------AHRTPDL-MFSYASSAHERGIEIIIAGAGGAA--HL 339 (438)
Q Consensus 270 ~~~v~iv~gs~-sD~~~~~~~~~~L~~~G~~~~~~v~s------~h~~~~~-~~~~~~~~~~~g~~v~i~~ag~~~--~l 339 (438)
..+|+|++-|. -+...++.+.+.|+++|+++...-.. .-+++++ ..++.+-+.+..+++++++-|+.+ .|
T Consensus 17 Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~rl 96 (311)
T 1zl0_A 17 DGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCGQL 96 (311)
T ss_dssp CSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGGGG
T ss_pred cCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHHHH
Confidence 34799997654 35778889999999999998653110 1234443 444555567778999999988764 23
Q ss_pred h-----hhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEE
Q 013701 340 P-----GMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 340 ~-----~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
. +.|+.-..++++|- ....+|+-.+.-- | +.|+-
T Consensus 97 Lp~LD~~~i~~a~PK~~iGy-------SDiTaL~~al~~~-G--~~t~h 135 (311)
T 1zl0_A 97 LPGLDWGRLQAASPRPLIGF-------SDISVLLSAFHRH-G--LPAIH 135 (311)
T ss_dssp TTTCCHHHHHHSCCCCEEEC-------GGGHHHHHHHHHT-T--CCEEE
T ss_pred hhccchhhhhccCCCEEEEE-------chhHHHHHHHHHc-C--CcEEE
Confidence 2 33443246667763 3566777666555 7 44443
No 216
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=39.37 E-value=84 Score=28.15 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.++.+.+...|..+....+- -.+++.+.++
T Consensus 31 ~vlITGas~gIG~~la~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~ 96 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSL----------GARV-VLT--ARDVEKLRAVEREIVAAGGEAESHACD-LSHSDAIAAF 96 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHHhCCceeEEEec-CCCHHHHHHH
Confidence 4677777655444444444431 2345 444 346778888888888888775544333 3456667776
Q ss_pred HHHHhh--cCCeEEEEEcCC
Q 013701 318 ASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~ 335 (438)
++...+ ..++++|-.||.
T Consensus 97 ~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 97 ATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 655422 258899988875
No 217
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=39.02 E-value=2.4e+02 Score=26.06 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCC----HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCCCCchhhh
Q 013701 270 LPRIGIIMGSDSD----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 270 ~~~v~iv~gs~sD----~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~~~l~~~i 343 (438)
..+|++++-+.++ ......+.+.++++|+.+... ....++++-.+.++++-. .+++.+|+.. .......++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHHH
Confidence 3578788766555 234455556777888876554 567788877777777666 5889777664 223344444
Q ss_pred hc--CCCCCEEEec
Q 013701 344 AA--RTPLPVIGVP 355 (438)
Q Consensus 344 ~~--~~~~pVI~~p 355 (438)
.. ....|||.+=
T Consensus 80 ~~~~~~giPvV~~~ 93 (350)
T 3h75_A 80 RLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHTTSCCEEEEEE
T ss_pred HHHHhCCCcEEEEc
Confidence 33 3467888664
No 218
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.85 E-value=2.1e+02 Score=25.44 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=47.7
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh--c
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--A 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~ 345 (438)
.+|+++....++ ......+.+.+.+.|+.+.. .....++++..++++.+...+++.+|........+...+. .
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATI--FDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 456677644333 23344455667788887543 3456677777777777777788877765433333222222 1
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||.+
T Consensus 81 ~~~iPvV~~ 89 (290)
T 2fn9_A 81 EAGIPVFCV 89 (290)
T ss_dssp HTTCCEEEE
T ss_pred HCCCeEEEE
Confidence 245688876
No 219
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=38.55 E-value=1.4e+02 Score=27.44 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=49.5
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIV-SAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~-s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~- 345 (438)
++|++++-..++ ......+.+.++++|+.+. +. ....+++.-.+.++.+...+++.+|+..-....+..++..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVT--YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEE--ECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEE--EECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 567777654333 1222333455677887654 33 3567777777788887778899877765433444444422
Q ss_pred -CCCCCEEEe
Q 013701 346 -RTPLPVIGV 354 (438)
Q Consensus 346 -~~~~pVI~~ 354 (438)
..-.|||.+
T Consensus 82 ~~~gipvV~~ 91 (316)
T 1tjy_A 82 MQRGVKILTW 91 (316)
T ss_dssp HHTTCEEEEE
T ss_pred HHCcCEEEEe
Confidence 245788876
No 220
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.17 E-value=1.3e+02 Score=22.93 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh
Q 013701 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE 323 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~ 323 (438)
++..|....++....+. +..++++. -.|++-++++.+..+.+|-.+-.-+. ...-.++.+|-++.+.
T Consensus 33 rspqelkdsieelvkky---------nativvvv--vddkewaekairfvkslgaqvliiiy--dqdqnrleefsrevrr 99 (134)
T 2l69_A 33 RSPQELKDSIEELVKKY---------NATIVVVV--VDDKEWAEKAIRFVKSLGAQVLIIIY--DQDQNRLEEFSREVRR 99 (134)
T ss_dssp CSHHHHHHHHHHHTTCC---------CCEEEEEE--CSSHHHHHHHHHHHHHHCCCCEEEEE--CSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh---------CCeEEEEE--EccHHHHHHHHHHHHhcCCeEEEEEE--eCchhHHHHHHHHHHh
Confidence 45556655555544432 23332332 34677777777777777766443332 4445567777777777
Q ss_pred cCCeEEEE
Q 013701 324 RGIEIIIA 331 (438)
Q Consensus 324 ~g~~v~i~ 331 (438)
+|+.|--+
T Consensus 100 rgfevrtv 107 (134)
T 2l69_A 100 RGFEVRTV 107 (134)
T ss_dssp TTCCEEEE
T ss_pred cCceEEEe
Confidence 77766544
No 221
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=38.09 E-value=2e+02 Score=25.34 Aligned_cols=79 Identities=16% Similarity=0.060 Sum_probs=47.1
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
++.+|+++..+.++ ......+.+.+.++|+.+... ..+ +++...++++.+...+++.+| ..... . ...+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~-~-~~~~~~ 77 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVI--DSL-TSQAGTDPITSALSMRPDGII-IAQDI-P-DFTVPD 77 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEE--CSS-SSCSSSCHHHHHHTTCCSEEE-EESCC---------
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEE--eCC-CchHHHHHHHHHHhCCCCEEE-ecCCC-C-hhhHhh
Confidence 35678888865444 455666667788899876544 445 666666677777788999777 43221 1 223333
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
...|||.+
T Consensus 78 -~~iPvV~~ 85 (280)
T 3gyb_A 78 -SLPPFVIA 85 (280)
T ss_dssp --CCCEEEE
T ss_pred -cCCCEEEE
Confidence 56777765
No 222
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=37.68 E-value=74 Score=28.51 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+.+...++...+...|-.+..-.+- -.+++.+.+++++..+ .+++++|-.||.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 39 TKEKLEEAKLEIEQFPGQILTVQMD-VRNTDDIQKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp CHHHHHHHHHHHCCSTTCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4455555555555555443322111 2334445555544322 256666666653
No 223
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=37.61 E-value=2.3e+02 Score=25.49 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=50.0
Q ss_pred CCeEEEEEec-----CCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCch
Q 013701 270 LPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLP 340 (438)
Q Consensus 270 ~~~v~iv~gs-----~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~ 340 (438)
+..|+++... .++ ......+.+.+.++|+.+.. ...+..++.-.++++.+...+++-+|+.... .....
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 99 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRM--TVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE 99 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEE--CCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH
Confidence 4678787755 233 33445566777889987654 4556666666778888888889976665422 22222
Q ss_pred hhhhcCCCCCEEEe
Q 013701 341 GMVAARTPLPVIGV 354 (438)
Q Consensus 341 ~~i~~~~~~pVI~~ 354 (438)
..+. ....|||.+
T Consensus 100 ~~l~-~~~iPvV~i 112 (305)
T 3huu_A 100 HLLN-EFKVPYLIV 112 (305)
T ss_dssp HHHH-HTTCCEEEE
T ss_pred HHHH-HcCCCEEEE
Confidence 2222 246788876
No 224
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=37.53 E-value=2.2e+02 Score=25.29 Aligned_cols=82 Identities=7% Similarity=-0.037 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC-CCchhhhh
Q 013701 269 VLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA-AHLPGMVA 344 (438)
Q Consensus 269 ~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~-~~l~~~i~ 344 (438)
++.+|++++...++ ......+.+.+.+.|+.+.. .....+++...++++.+...+++.+|+..... ......+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~ 84 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII 84 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh
Confidence 34678888754333 23444555677789987654 34566777777788887788899777654321 12222333
Q ss_pred cCCCCCEEEe
Q 013701 345 ARTPLPVIGV 354 (438)
Q Consensus 345 ~~~~~pVI~~ 354 (438)
...|||.+
T Consensus 85 --~~iPvV~~ 92 (285)
T 3c3k_A 85 --GAFPWVQC 92 (285)
T ss_dssp --TTSSEEEE
T ss_pred --cCCCEEEE
Confidence 56788876
No 225
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=37.53 E-value=1.3e+02 Score=23.34 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=26.4
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEE
Q 013701 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
..|.|.|-++ +.-+.+..+.+.|+++|++++..-+
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di 53 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDI 53 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEG
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEEC
Confidence 4565676432 5689999999999999999876533
No 226
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=37.48 E-value=58 Score=30.13 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=31.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+| ++++ .+.+.+.++++. +|-+...-.+ =-.+++.+.+++++..+ .++++.|-.||..
T Consensus 55 ~V-~i~~--r~~~~l~~~~~~---~g~~~~~~~~-Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~ 114 (273)
T 4fgs_A 55 RV-FITG--RRKDVLDAAIAE---IGGGAVGIQA-DSANLAELDRLYEKVKAEAGRIDVLFVNAGGG 114 (273)
T ss_dssp EE-EEEE--SCHHHHHHHHHH---HCTTCEEEEC-CTTCHHHHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred EE-EEEE--CCHHHHHHHHHH---cCCCeEEEEe-cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 55 4443 455656555544 4544322211 14566777777665432 2578888888753
No 227
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=37.40 E-value=2.1e+02 Score=27.60 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=42.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..++.....+.+++..|...|+.++... +. ..+.+-++.+...|++..|++
T Consensus 299 ~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~----~~-~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 299 VQVVIMNITDSQSEYVNELTQKLSNAGIRVKADL----RN-EKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEC----CS-SCHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEEC----CC-CCHHHHHHHHHhcCCCEEEEE
Confidence 3576777777778999999999999999988773 21 235555666688899966655
No 228
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=37.29 E-value=49 Score=28.19 Aligned_cols=67 Identities=15% Similarity=0.012 Sum_probs=40.7
Q ss_pred CCCeEEEEEecCC------------CHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHh-hcCCeEEEEEcC
Q 013701 269 VLPRIGIIMGSDS------------DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAH-ERGIEIIIAGAG 334 (438)
Q Consensus 269 ~~~~v~iv~gs~s------------D~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~-~~g~~v~i~~ag 334 (438)
++-+++|++.||+ |.. -.-+++.|.++|+++.. +++ -=+++.+.+.+++.. ...++++|+..|
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~n-g~~L~~~L~~~G~~v~~~~iV--~Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDES-GDIIKQLLIENGHKIIGYSLV--PDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHH-HHHHHHHHHHTTCEEEEEEEE--CSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcch-HHHHHHHHHHCCCEEEEEEEe--CCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 3457888887763 321 23467889999999643 322 223455555554432 346788888877
Q ss_pred CCCC
Q 013701 335 GAAH 338 (438)
Q Consensus 335 ~~~~ 338 (438)
.+..
T Consensus 91 ~g~~ 94 (178)
T 3iwt_A 91 TGYS 94 (178)
T ss_dssp CSSS
T ss_pred cccC
Confidence 6544
No 229
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=36.75 E-value=2e+02 Score=25.85 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=50.7
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-- 345 (438)
.+|++++...++ ......+.+.+.++|+.+.. .....++++..++++.+..++++.+|+.......+...+..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKI--ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 80 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH
Confidence 367777765443 22334456778889987654 34567777777888887778899777654332222333321
Q ss_pred CCCCCEEEec
Q 013701 346 RTPLPVIGVP 355 (438)
Q Consensus 346 ~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 81 ~~~iPvV~~~ 90 (306)
T 2vk2_A 81 DAEIPVFLLD 90 (306)
T ss_dssp HTTCCEEEES
T ss_pred HCCCCEEEec
Confidence 2457888763
No 230
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=36.60 E-value=1.1e+02 Score=27.71 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=47.7
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.--..-+...+.. ..+| ++. +.+.+...++.+.+...|.++....+- -.+++.+.++
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~~~~~v~~~ 89 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKE----------GLRV-FVC--ARGEEGLRTTLKELREAGVEADGRTCD-VRSVPEIEAL 89 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHH
Confidence 3677777654444444444331 1245 333 234566667777777777665433222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~~ 110 (277)
T 2rhc_B 90 VAAVVERYGPVDVLVNNAGRP 110 (277)
T ss_dssp HHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 655432 2588999888753
No 231
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=36.45 E-value=3.8e+02 Score=27.70 Aligned_cols=110 Identities=20% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCeEEEEEecCCC----HH--------HHHHHHHHHHH-----cCCcEEEEEEe-cCCChhHHHHHHHHHhhcCCeEEEE
Q 013701 270 LPRIGIIMGSDSD----LP--------VMKDAAKILTM-----FSVPHEVRIVS-AHRTPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 270 ~~~v~iv~gs~sD----~~--------~~~~~~~~L~~-----~G~~~~~~v~s-~h~~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
.++|+|+..++.- .+ .++++++.+.+ .|.++++.++. .-.+.++..+..+.+++.+++++++
T Consensus 11 ~~kiGi~p~~dgr~~~~re~l~~~~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~F~~~~vd~ii~ 90 (595)
T 3a9s_A 11 LPKIGIRPTIDGRRKGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKFAREGVGVSIT 90 (595)
T ss_dssp CCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHHHTEEEEEE
T ss_pred CceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3577777775544 22 23334445543 23334444333 3455666667777777778886665
Q ss_pred EcCC--CCCchhhhhcCCCCCEE--EecCCCCCCCChhhHHHhhcC--CCCCceEEEE
Q 013701 332 GAGG--AAHLPGMVAARTPLPVI--GVPVRASALDGLDSLLSIVQM--PRGVPVATVA 383 (438)
Q Consensus 332 ~ag~--~~~l~~~i~~~~~~pVI--~~p~~~~~~~g~~~l~s~~~~--~~gip~~tv~ 383 (438)
.-+- -++..-.++. ..||+ |.+.. ...|.=.|.+.++. ..|+|..++-
T Consensus 91 ~~~~w~yg~et~~~~~--~~Pvllw~~~~~--e~pG~~gl~a~~~~l~q~Gip~~~I~ 144 (595)
T 3a9s_A 91 VTPCWCYGTETMDMDP--HIPKAVWGFNGT--ERPGAVYLAAVLAGYNQKGLPAFGIY 144 (595)
T ss_dssp EESSCCCGGGTCCCCT--TSCEEEEECCCS--SSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EeccCCCHHHHHhhcC--CCCEEEEeCCCC--CCcchhHHHHHHHHHHHcCCceEEEe
Confidence 5432 1122222222 44444 44432 12255455554444 6688877664
No 232
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=36.43 E-value=1e+02 Score=27.51 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+...+..+.+...|..+....+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~ 102 (260)
T 2zat_A 47 KQENVDRTVATLQGEGLSVTGTVCH-VGKAEDRERLVAMAVNLHGGVDILVSNAAVN 102 (260)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4455666666666666554433222 3455666665544322 2688888888753
No 233
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=35.35 E-value=1.6e+02 Score=26.58 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=50.2
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++.+ .++.+...++++.+...|..+..-.+- -.+++.+.+++
T Consensus 32 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~ 98 (280)
T 4da9_A 32 AIVTGGRRGIGLGIARALAAS----------GFDI-AITG-IGDAEGVAPVIAELSGLGARVIFLRAD-LADLSSHQATV 98 (280)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE-SCCHHHHHHHHHHHHHTTCCEEEEECC-TTSGGGHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHC----------CCeE-EEEe-CCCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHH
Confidence 667776654333344444331 2355 3432 346677888888888888775544333 44566677776
Q ss_pred HHHhhc--CCeEEEEEcCC
Q 013701 319 SSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~ 335 (438)
++..+. +++++|-.||.
T Consensus 99 ~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 99 DAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 654332 68899999986
No 234
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=35.13 E-value=61 Score=29.97 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=48.8
Q ss_pred HHHHcCCcEEEEE-Ee--cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013701 292 ILTMFSVPHEVRI-VS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 292 ~L~~~G~~~~~~v-~s--~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
..+.+|++....+ .| ..=+|..+.++++.+++++++++..-...++.+...|+..+-.+|+.+
T Consensus 187 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 187 FEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 3466888854433 22 345678899999889999999999888888889999998888888765
No 235
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=35.09 E-value=91 Score=27.99 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcC-CcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G-~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+...++...+...| -++..-.+- -.+++.+.+++++..+ .+++++|-.||..
T Consensus 42 r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 42 RSTADIDACVADLDQLGSGKVIGVQTD-VSDRAQCDALAGRAVEEFGGIDVVCANAGVF 99 (262)
T ss_dssp SCHHHHHHHHHHHHTTSSSCEEEEECC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45666777777777766 333322222 3456666666654432 2688888888754
No 236
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=34.93 E-value=49 Score=31.79 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred CeEEEEEecCC------CHHHHHHHHHHHHHcCCcEEEEEEecC------CCh-hHHHHHHHHHhhcCCeEEEEEcCCC-
Q 013701 271 PRIGIIMGSDS------DLPVMKDAAKILTMFSVPHEVRIVSAH------RTP-DLMFSYASSAHERGIEIIIAGAGGA- 336 (438)
Q Consensus 271 ~~v~iv~gs~s------D~~~~~~~~~~L~~~G~~~~~~v~s~h------~~~-~~~~~~~~~~~~~g~~v~i~~ag~~- 336 (438)
.+|+|++-|.. +...++.+.+.|+++|+++...-.... +++ +|..++.+-+.+..+++++++-||.
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 85 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGDD 85 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCSC
T ss_pred cEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccC
Confidence 57888875532 356788899999999999765411111 233 3455555556777899999988865
Q ss_pred -CCchhhh-------hcCCCCCEEEe
Q 013701 337 -AHLPGMV-------AARTPLPVIGV 354 (438)
Q Consensus 337 -~~l~~~i-------~~~~~~pVI~~ 354 (438)
+.|.+.| +-...++++|-
T Consensus 86 ~~rlLp~L~d~~~~~~~~~~K~~iGy 111 (346)
T 4eys_A 86 TYRLLPYLFENDQLQKVIKQKIFLGF 111 (346)
T ss_dssp GGGGHHHHHTTSHHHHHCCCCEEEEC
T ss_pred HHHHHHHhhchhhhhHhhCCcEEEEe
Confidence 4555544 11124777763
No 237
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=34.77 E-value=86 Score=28.41 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=50.5
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.=-+.-+...+.. ..+| ++. +.+.+...++...+...|.++....+- -.+++.+.++
T Consensus 30 ~~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~ 95 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELARR----------GAMV-IGT--ATTEAGAEGIGAAFKQAGLEGRGAVLN-VNDATAVDAL 95 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEE--ESSHHHHHHHHHHHHHHTCCCEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCcEEEEEEe-CCCHHHHHHH
Confidence 3667777654444444444331 2345 444 345677788888888887765443322 4566677777
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 96 VESTLKEFGALNVLVNNAGIT 116 (270)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 665433 2688999888754
No 238
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=34.55 E-value=1.1e+02 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCc-EEEEEEecCCChhHHHHHHHH-HhhcCCeEEEEEcCC
Q 013701 284 PVMKDAAKILTMFSVP-HEVRIVSAHRTPDLMFSYASS-AHERGIEIIIAGAGG 335 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~-~~~~v~s~h~~~~~~~~~~~~-~~~~g~~v~i~~ag~ 335 (438)
..+.++.+.+...|++ ++..+.. .+.|.+ .+++. +++.+++.+|.++-+
T Consensus 79 ~~l~~~~~~~~~~g~~~~~~~v~~-~g~~~~--~I~~~~a~~~~~DlIV~G~~g 129 (156)
T 3fg9_A 79 DVVAEYVQLAEQRGVNQVEPLVYE-GGDVDD--VILEQVIPEFKPDLLVTGADT 129 (156)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEE-CSCHHH--HHHHTHHHHHCCSEEEEETTC
T ss_pred HHHHHHHHHHHHcCCCceEEEEEe-CCCHHH--HHHHHHHHhcCCCEEEECCCC
Confidence 3455556667778994 7666543 255543 34444 467789988887743
No 239
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=34.39 E-value=2.7e+02 Score=25.39 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=48.6
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcC--CeEEEEEcCCCCCchhhhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERG--IEIIIAGAGGAAHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g--~~v~i~~ag~~~~l~~~i~ 344 (438)
+.+|+++....++ ......+.+.+.+.|+.+... ....+++...++++.+...+ ++.+|+.......+...+.
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~--~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPL--TTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEE--ECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEe--cCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 4577777754333 233445556677888876543 45667777777777777777 8876665432222222332
Q ss_pred c--CCCCCEEEec
Q 013701 345 A--RTPLPVIGVP 355 (438)
Q Consensus 345 ~--~~~~pVI~~p 355 (438)
. ....|||.+-
T Consensus 83 ~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 83 ACSKAGAYVTTIW 95 (332)
T ss_dssp HHHHHTCEEEEES
T ss_pred HHHHCCCeEEEEC
Confidence 1 1346887763
No 240
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=34.07 E-value=66 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013701 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
..+.+.++.+++.|++.++++-..+....+.+......|||++
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGGGHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHCCCCEEcc
Confidence 3345555555666777544443322123445556666777775
No 241
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=34.03 E-value=98 Score=27.63 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh---cCCeEEEEEcC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE---RGIEIIIAGAG 334 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~---~g~~v~i~~ag 334 (438)
.+.+.+.++.+.+...|-.+..-.+- -.+++.+.++++...+ ..++++|-.||
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~~g~id~lvnnAg 92 (260)
T 2qq5_A 37 RHLDTLRVVAQEAQSLGGQCVPVVCD-SSQESEVRSLFEQVDREQQGRLDVLVNNAY 92 (260)
T ss_dssp SCHHHHHHHHHHHHHHSSEEEEEECC-TTSHHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECC-CCCHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence 34566666666666666544332222 3456666777766532 35788888885
No 242
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=33.77 E-value=1.6e+02 Score=26.40 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.....++.+.+...|-.+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 64 NKHGLEETAAKCKGLGAKVHTFVVD-CSNREDIYSSAKKVKAEIGDVSILVNNAGVV 119 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEee-CCCHHHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence 4555666666666666554433222 3456666666654432 2577888777643
No 243
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=33.69 E-value=68 Score=29.17 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++. +.+.+...++.+.+...|..+....+- -.+++.+.+++
T Consensus 29 ~lVTGas~gIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 94 (271)
T 4ibo_A 29 ALVTGSSRGLGRAMAEGLAVA----------GARI-LIN--GTDPSRVAQTVQEFRNVGHDAEAVAFD-VTSESEIIEAF 94 (271)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEC--CSCHHHHHHHHHHHHHTTCCEEECCCC-TTCHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHH
Confidence 667776654334444444331 1244 333 356777888888888887665433222 34566677766
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 95 ~~~~~~~g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGIQ 114 (271)
T ss_dssp HHHHHHTCCCCEEEECCCCC
T ss_pred HHHHHHCCCCCEEEECCCCC
Confidence 554332 578888888753
No 244
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} SCOP: c.23.17.1
Probab=33.60 E-value=47 Score=29.75 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=46.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe--------cCCChhHHHHHHHHHhhcC--CeEEEEEcCCCC----Cch
Q 013701 275 IIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--------AHRTPDLMFSYASSAHERG--IEIIIAGAGGAA----HLP 340 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s--------~h~~~~~~~~~~~~~~~~g--~~v~i~~ag~~~----~l~ 340 (438)
|++ |..+-..-=-.+.|..+|.++.+.+.- ..+++. ...-++.+.++. -..++++ |.++ +|-
T Consensus 69 Ivt--Dv~Mv~aGI~~~~l~~~g~~v~C~i~d~~v~~~Ak~~g~TR-saaa~~~~~~~~~~~~aI~aI-GNAPTAL~~Ll 144 (218)
T 1v9c_A 69 ILV--DARMIACGLNPERLRLFGNEVVELLAHPEVVARAKATGGTR-AEAAVAYAWEKGLLDGAIVGV-GNAPTFLLALV 144 (218)
T ss_dssp EEE--SCHHHHHHSCHHHHGGGTCCEEEGGGCHHHHHC------CH-HHHHHHHHHTTTTTSSCEEEE-SSCTTTTHHHH
T ss_pred EEE--ecHHHHHHhCHHHHHHcCCeeEEECCCcchHHHHHHcCCCH-HHHHHHHHHHhccCCCcEEEE-eCcHHHHHHHH
Confidence 454 444443333345667777777665321 122222 233333333321 1223333 4433 455
Q ss_pred hhhhc-CCCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013701 341 GMVAA-RTPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 341 ~~i~~-~~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
.+|.+ -.+..|||+|++ .+...--+.| +..+||++|+.
T Consensus 145 eli~g~~~PalVIG~PVGFVgaaESKe~L-----~~~~vP~I~~~ 184 (218)
T 1v9c_A 145 EAIRQGARPALVLGMPVGFVNVLEAKRAL-----MEAPVPWIVTE 184 (218)
T ss_dssp HHHHTTCCCSEEEECCCSSSSHHHHHHHH-----TTSSSCEEEEC
T ss_pred HHHcCCCCCcEEEEeCCCccCHHHHHHHH-----HhCCCCEEEEe
Confidence 66652 356669999996 2111111222 24599999875
No 245
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.57 E-value=2.5e+02 Score=24.80 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=50.4
Q ss_pred CCCeEEEEEec-----CCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCc
Q 013701 269 VLPRIGIIMGS-----DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHL 339 (438)
Q Consensus 269 ~~~~v~iv~gs-----~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l 339 (438)
++.+|++++.. .++ ......+.+.+.++|+.+.. ...+..++...++++.+...+++.+|..... ....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 84 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM--STGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRI 84 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE--CCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHH
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHH
Confidence 34678888755 333 24445556777889987654 4556666666777877788889977665432 2222
Q ss_pred hhhhhcCCCCCEEEe
Q 013701 340 PGMVAARTPLPVIGV 354 (438)
Q Consensus 340 ~~~i~~~~~~pVI~~ 354 (438)
...+. ....|||-+
T Consensus 85 ~~~l~-~~~iPvV~~ 98 (292)
T 3k4h_A 85 IQYLH-EQNFPFVLI 98 (292)
T ss_dssp HHHHH-HTTCCEEEE
T ss_pred HHHHH-HCCCCEEEE
Confidence 22222 246788866
No 246
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=33.44 E-value=1.6e+02 Score=26.94 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.+.+..+.+...|..+....+- -.+++.+.+++++..+ .+++++|-.||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 73 TPDDLAETVRQVEALGRRIIASQVD-VRDFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4778888888888888776544333 4578888777766533 2688999888754
No 247
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=33.37 E-value=73 Score=29.14 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.+.+.++.+.+...|..+..-.+- -.+++.+.++++...+ .+++++|-.||..
T Consensus 40 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 40 RNGNALAELTDEIAGGGGEAAALAGD-VGDEALHEALVELAVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEECCCC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 34555566666555555443322111 2345555555544322 2577777777643
No 248
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=33.31 E-value=68 Score=29.86 Aligned_cols=69 Identities=16% Similarity=0.344 Sum_probs=43.1
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCC-CC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTP-LP 350 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~-~p 350 (438)
+++|+.-.+++ +.++.+.|.+.|+.+... .+..+ .+ .+++++|+. |+.+.+......... .|
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~~g~~v~~~----~~~~~----~~-----~~~DlvIvl-GGDGT~L~aa~~~~~~~P 93 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKRLEVEVELF----NQPSE----EL-----ENFDFIVSV-GGDGTILRILQKLKRCPP 93 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHHTTCEEEEE----SSCCG----GG-----GGSSEEEEE-ECHHHHHHHHTTCSSCCC
T ss_pred EEEEEeCCcHH---HHHHHHHHHHCCCEEEEc----ccccc----cc-----CCCCEEEEE-CCCHHHHHHHHHhCCCCc
Confidence 46666643333 888999999999987665 33211 12 246777665 456555555443322 89
Q ss_pred EEEecCC
Q 013701 351 VIGVPVR 357 (438)
Q Consensus 351 VI~~p~~ 357 (438)
|+|+.++
T Consensus 94 ilGIN~G 100 (278)
T 1z0s_A 94 IFGINTG 100 (278)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9999875
No 249
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=33.25 E-value=1.6e+02 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+...+.++.+.+...|.++....+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 61 SPEDLDETARLVEDQGRKALTRVLD-VRDDAALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5667777777777777665544333 4456766666655432 2577888877754
No 250
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=32.99 E-value=2.5e+02 Score=24.57 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=46.3
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
+.+|+++....++ ......+.+.+.+.|+.+... ....+++.-.++++.+...+++.+|..... .......+.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~- 79 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLG--YSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLE- 79 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCE--ECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHH-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEE--cCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH-
Confidence 3567777754333 233444556677788875433 445667777777777777788855554322 212222222
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||.+
T Consensus 80 ~~~iPvV~~ 88 (275)
T 3d8u_A 80 ASNTPVLEI 88 (275)
T ss_dssp HHTCCEEEE
T ss_pred hCCCCEEEE
Confidence 235688776
No 251
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=32.91 E-value=1.3e+02 Score=26.72 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=46.2
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.--..-+...+.. ..+| ++.+ .+.+...++.+.+...|-.+..-.+. -.+++.+.+++
T Consensus 5 vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~ 70 (256)
T 1geg_A 5 ALVTGAGQGIGKAIALRLVKD----------GFAV-AIAD--YNDATAKAVASEINQAGGHAVAVKVD-VSDRDQVFAAV 70 (256)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHH
Confidence 567776654444444443331 2245 3332 34566667777777767554333222 34566666666
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 71 ~~~~~~~g~id~lv~nAg~~ 90 (256)
T 1geg_A 71 EQARKTLGGFDVIVNNAGVA 90 (256)
T ss_dssp HHHHHHTTCCCEEEECCCCC
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 554322 688888888754
No 252
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=32.86 E-value=1e+02 Score=30.18 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=41.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..+++....+.++++.|...|+.++.. .+. .++.+-++.++..|++..+++
T Consensus 333 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d----~~~-~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 333 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVE----IME-RGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHTTTCEEEEC----CSC-CCHHHHHHHHHHTTCSEEEEE
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe----cCC-CCHHHHHHHHHHCCCCEEEEE
Confidence 457677767778899999999999999998776 221 234455556688899966655
No 253
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=32.79 E-value=93 Score=28.48 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=40.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v 328 (438)
++|.|++|.-.+=-...-+++.|...|+++.+-..+..+.......-++.++..|.++
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~a~~~~~~~~~~g~~~ 143 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQ 143 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBCSSCCHHHHHHHHHHTTSSCEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHHcCCCc
Confidence 4788999988888899999999999999977654442222334444455555556553
No 254
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=32.78 E-value=52 Score=30.93 Aligned_cols=33 Identities=21% Similarity=-0.005 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVR 303 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~ 303 (438)
+++++|+|..++.-.-..+++.|.+.|+++.++
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~ 34 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFG 34 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 457799987766677888899999999887654
No 255
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=32.77 E-value=2e+02 Score=24.30 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=33.9
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC--CCCCEEEecCC
Q 013701 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR--TPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~--~~~pVI~~p~~ 357 (438)
-+-+.|..|....+.+.++.++++|++++....-..+. ++.. ...-+|-+|..
T Consensus 112 vvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~----la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 112 VLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE----LAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHH----HHTTCCTTSEEEECSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCch----hhhcccCCCEEEEeCCC
Confidence 45567888889999999999999999865443311111 2322 13457777763
No 256
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=32.54 E-value=75 Score=28.92 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=45.2
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+..=-+.-+...+.. ..+| ++.+. +.+...++.+.+...|..+..-.+- -.+++.+.+++
T Consensus 36 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~~~~~~ 101 (275)
T 4imr_A 36 ALVTGSSRGIGAAIAEGLAGA----------GAHV-ILHGV--KPGSTAAVQQRIIASGGTAQELAGD-LSEAGAGTDLI 101 (275)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEEES--STTTTHHHHHHHHHTTCCEEEEECC-TTSTTHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEEcC--CHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHHH
Confidence 566776654444444444331 2345 44433 2334555666667777665433222 34566666666
Q ss_pred HHHhh-cCCeEEEEEcCCC
Q 013701 319 SSAHE-RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~-~g~~v~i~~ag~~ 336 (438)
+...+ .+++++|-.||..
T Consensus 102 ~~~~~~g~iD~lvnnAg~~ 120 (275)
T 4imr_A 102 ERAEAIAPVDILVINASAQ 120 (275)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 55433 3688888888753
No 257
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=32.52 E-value=1.4e+02 Score=27.00 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHcCC---cEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~---~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+...++++.+...|. .+....+- -.+++.+.+++++..+ .+++++|-.||.
T Consensus 43 r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 43 RNPDKLAGAVQELEALGANGGAIRYEPTD-ITNEDETARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp SCHHHHHHHHHHHHTTCCSSCEEEEEECC-TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 456666777777777665 33322222 3456666666655432 257788877775
No 258
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=32.49 E-value=2.5e+02 Score=24.35 Aligned_cols=81 Identities=10% Similarity=-0.008 Sum_probs=50.0
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcC
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAAR 346 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~ 346 (438)
++.|+++....++ ......+.+.+.+.|+.+... ..+.+++...++++.+..++++-+|......... ..+..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~-~~l~~- 77 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMM--ESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE-EMLAH- 77 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEE--ECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-TTSGG-
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEE--eCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-HHHHh-
Confidence 3567788754444 234455567778899876543 4567787777888888888899666654222222 22332
Q ss_pred CCCCEEEe
Q 013701 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVI~~ 354 (438)
...|||-+
T Consensus 78 ~~~pvV~~ 85 (255)
T 1byk_A 78 WQSSLVLL 85 (255)
T ss_dssp GSSSEEEE
T ss_pred cCCCEEEE
Confidence 23588766
No 259
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=32.46 E-value=2.9e+02 Score=25.14 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCH---HHHHHHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc
Q 013701 270 LPRIGIIMGSDSDL---PVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD~---~~~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~ 345 (438)
+.+|++++.. ++- .....+.+.+.+. |+.+. +...+.+++...+.++.+...+++.+|+.......+...+..
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 4567777654 331 2233344455566 77654 344566777777777777777888766654222112222221
Q ss_pred --CCCCCEEEe
Q 013701 346 --RTPLPVIGV 354 (438)
Q Consensus 346 --~~~~pVI~~ 354 (438)
....|||.+
T Consensus 83 ~~~~~iPvV~~ 93 (325)
T 2x7x_A 83 AYQKGIPVILV 93 (325)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCeEEEe
Confidence 245688876
No 260
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=32.36 E-value=2.7e+02 Score=24.83 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCh--hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc---------CCCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTP--DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA---------RTPLP 350 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~--~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~---------~~~~p 350 (438)
+.+...++.+..++.|.++-+..-..++|| +++.+.+.++.+.|+++.-.+ .++....+++.- ....|
T Consensus 110 ~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia-~~a~~~~D~l~ll~~~~~~~~~~~~P 188 (238)
T 1sfl_A 110 DIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA-VMPHNKNDVLNLLQAMSTFSDTMDCK 188 (238)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE-ECCSSHHHHHHHHHHHHHHHHHCSSE
T ss_pred ChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEE-ecCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 556667777777777777544433344788 677777888888888843332 255555555422 24679
Q ss_pred EEEecCCCCCCCChhhHHHhhcC-CCCCceE
Q 013701 351 VIGVPVRASALDGLDSLLSIVQM-PRGVPVA 380 (438)
Q Consensus 351 VI~~p~~~~~~~g~~~l~s~~~~-~~gip~~ 380 (438)
+|....+ -...+|++.- -.|-|+.
T Consensus 189 ~I~~~MG------~~G~~SRi~~~~~GS~~t 213 (238)
T 1sfl_A 189 VVGISMS------KLGLISRTAQGVFGGALT 213 (238)
T ss_dssp EEEEECT------GGGHHHHHTGGGGTBCEE
T ss_pred EEEEECC------CCchHHHHHHHHhCCCee
Confidence 9988763 2334566555 4576665
No 261
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=32.36 E-value=1.6e+02 Score=26.00 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=38.1
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+..|+++....++ ......+.+.+.++|+.+.. ...+.+++.-.++++.+...+++.+|...
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLI--GNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3567777755433 22344455666778877653 45566777777777777777888666654
No 262
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=32.27 E-value=93 Score=28.25 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=38.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v 328 (438)
.+|.|++|.-.+=-...-+++.|...|+++.+-...-.+........++.++..|+++
T Consensus 59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPV 116 (246)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEcCCCCCCHHHHHHHHHHHHcCCcE
Confidence 4788999988888888999999999999877653332122333344455555556553
No 263
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=32.26 E-value=1.5e+02 Score=26.43 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+...++.+.+...|..+..-.+- -.+++.+.+++++..+ .+++++|-.||.
T Consensus 37 r~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (258)
T 3oid_A 37 RSKKAALETAEEIEKLGVKVLVVKAN-VGQPAKIKEMFQQIDETFGRLDVFVNNAAS 92 (258)
T ss_dssp SCHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45667777777777777665443322 4456666666655432 257788888864
No 264
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.04 E-value=3e+02 Score=25.14 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC-CCCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG-GAAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag-~~~~l~~~i~~ 345 (438)
+.+|+++....++ ......+.+.+.+.|+.+.. ...+.+++...++++.+...+++-+|.... ........+.
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~- 139 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASMYKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLK- 139 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHH-
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHH-
Confidence 4578888754333 23344555677789987654 345677777777888877888997776542 1211122222
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||.+
T Consensus 140 ~~~iPvV~~ 148 (332)
T 2o20_A 140 NSRTPVVLV 148 (332)
T ss_dssp HHCCCEEEE
T ss_pred hCCCCEEEE
Confidence 235688876
No 265
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=31.89 E-value=1.4e+02 Score=26.77 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=44.7
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHH-HHcCCcEEEEEEecCCChhHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L-~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++++|.+-.=-..-+...+.. ..+| ++.+ .+.+...+++..+ ...|.++..-.+. -.+++.+.++
T Consensus 24 ~lVTGas~gIG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~v~~~ 89 (267)
T 1vl8_A 24 ALVTGGSRGLGFGIAQGLAEA----------GCSV-VVAS--RNLEEASEAAQKLTEKYGVETMAFRCD-VSNYEEVKKL 89 (267)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHHCCCEEEEECC-TTCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHH
Confidence 667776654444444444331 1245 3332 3455566666666 4556554433222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 90 ~~~~~~~~g~iD~lvnnAg~~ 110 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAGIN 110 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 654422 2688888888754
No 266
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.79 E-value=1.7e+02 Score=22.31 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=34.2
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHh
Q 013701 273 IGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 322 (438)
Q Consensus 273 v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~ 322 (438)
++|+.-| .|.+.+.+-....++.||++.. -|+|+++..-++++-
T Consensus 3 ivivvfs-tdeetlrkfkdiikkngfkvrt-----vrspqelkdsieelv 46 (134)
T 2l69_A 3 IVIVVFS-TDEETLRKFKDIIKKNGFKVRT-----VRSPQELKDSIEELV 46 (134)
T ss_dssp EEEEECC-CCHHHHHHHHHHHHHTTCEEEE-----ECSHHHHHHHHHHHT
T ss_pred EEEEEEe-CCHHHHHHHHHHHHhcCceEEE-----ecCHHHHHHHHHHHH
Confidence 3355555 5889999999999999999643 488999988887763
No 267
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=31.35 E-value=66 Score=25.84 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=37.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEE-----------------------EEEecCCChhHHHHHHHHHhhcCCe
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEV-----------------------RIVSAHRTPDLMFSYASSAHERGIE 327 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~-----------------------~v~s~h~~~~~~~~~~~~~~~~g~~ 327 (438)
..|+++=.|+..-.....+.+.|.+.||+++. ..+..-+.++.+.++++++.+.|++
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~~~g~k 84 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKPK 84 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCCS
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHHhcCCC
Confidence 35666655554455667777788888876431 2233344455666666666666777
Q ss_pred EEEEEcC
Q 013701 328 IIIAGAG 334 (438)
Q Consensus 328 v~i~~ag 334 (438)
.++...|
T Consensus 85 ~v~~~~G 91 (122)
T 3ff4_A 85 RVIFNPG 91 (122)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 6554444
No 268
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.31 E-value=2.7e+02 Score=24.44 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=48.3
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA-- 345 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~-- 345 (438)
++|+++....++ ...+..+.+.+.+.|+.+.. .....++++-.++++.+...+++-+|+.......+...+..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 79 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 356677654333 23444555677788977544 34566777777788877778888766654333332222321
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||-+
T Consensus 80 ~~~iPvV~i 88 (271)
T 2dri_A 80 QANIPVITL 88 (271)
T ss_dssp HTTCCEEEE
T ss_pred HCCCcEEEe
Confidence 235688876
No 269
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=31.29 E-value=3.6e+02 Score=28.19 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=65.6
Q ss_pred eeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-------
Q 013701 235 KMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------- 307 (438)
Q Consensus 235 ~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------- 307 (438)
.+=..+..|++.+++.++-.+..+.-..+| ...-|-- ..-=+-.+...++++++.+++.|+++++-+...
T Consensus 132 ~lD~y~~~G~~p~~v~~~Y~~ltG~~~lpP--~walG~~-qsr~~Y~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~~~~ 208 (666)
T 3nsx_A 132 DLDIYVIEGENAYDIVKQFRRVIGRSYIPP--KFAFGFG-QSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFK 208 (666)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHCCCCCCC--GGGGSEE-EEETTCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTTC
T ss_pred ceEEEEEcCCCHHHHHHHHHHhhCcccCCc--ccccccc-ccccccCCHHHHHHHHHHHHhcCCCcceEEEecHHHHhhc
Confidence 344555669999999999988888754321 0011211 233356688999999999999999998877652
Q ss_pred ------CCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 308 ------HRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 308 ------h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+|=|+ ..++++++.+.|+++++.+
T Consensus 209 ~ft~d~~~FPd-p~~mv~~Lh~~G~k~v~~i 238 (666)
T 3nsx_A 209 DFTVNEKNFPD-FPEFVKEMKDQELRLIPII 238 (666)
T ss_dssp TTCCCTTTCTT-HHHHHHHHHTTTCEEEEEE
T ss_pred ccccChhhCCC-HHHHHHHHHHcCceEEeee
Confidence 23343 6778888899999966554
No 270
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.08 E-value=2.8e+02 Score=24.59 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=45.3
Q ss_pred CCCeEEEEEecCCC-----HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhh
Q 013701 269 VLPRIGIIMGSDSD-----LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGM 342 (438)
Q Consensus 269 ~~~~v~iv~gs~sD-----~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~ 342 (438)
++..|+++....++ ......+.+.+.++|+.+... .....++...++.+.+...+++.+|+.... .......
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 84 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRF 84 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTCHHHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecCCCCcHHHHH
Confidence 34678888765432 233444556667788765543 444445544555555566788866655322 2222222
Q ss_pred hhcCCCCCEEEe
Q 013701 343 VAARTPLPVIGV 354 (438)
Q Consensus 343 i~~~~~~pVI~~ 354 (438)
+. ....|||.+
T Consensus 85 l~-~~~iPvV~i 95 (288)
T 3gv0_A 85 MT-ERNMPFVTH 95 (288)
T ss_dssp HH-HTTCCEEEE
T ss_pred Hh-hCCCCEEEE
Confidence 22 246788866
No 271
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=31.06 E-value=1.4e+02 Score=26.50 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+...++.+.+... |.++..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 40 QVDRLHEAARSLKEKFGVRVLEVAVD-VATPEGVDAVVESVRSSFGGADILVNNAGTG 96 (263)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECC-TTSHHHHHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 445555666555544 5544332222 3456666666654432 2688888888753
No 272
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=31.00 E-value=1.6e+02 Score=26.14 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=44.9
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++...+.+...+.+..+.+...|-++..-.+- -.+++.+.+++
T Consensus 5 vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~ 72 (258)
T 3a28_C 5 AMVTGGAQGIGRGISEKLAAD----------GFDI-AVADLPQQEEQAAETIKLIEAADQKAVFVGLD-VTDKANFDSAI 72 (258)
T ss_dssp EEEETTTSHHHHHHHHHHHHH----------TCEE-EEEECGGGHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEeCCcchHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHH
Confidence 566776644333344443332 1245 34434333333566666666666554333222 34566666666
Q ss_pred HHHhh--cCCeEEEEEcCCC
Q 013701 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 73 ~~~~~~~g~iD~lv~nAg~~ 92 (258)
T 3a28_C 73 DEAAEKLGGFDVLVNNAGIA 92 (258)
T ss_dssp HHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 54322 2688888888754
No 273
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.95 E-value=1.8e+02 Score=22.89 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=24.7
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHcCCc---EEEE
Q 013701 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVP---HEVR 303 (438)
Q Consensus 271 ~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~---~~~~ 303 (438)
..|.|+|-++ ..-+.+..+.+.|.++|++ |+..
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~ 54 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAY 54 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEE
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEE
Confidence 4565777542 2588999999999999998 6543
No 274
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=30.90 E-value=1.3e+02 Score=26.86 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=44.2
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~ 316 (438)
++++|.+-.=-..-+...+.. ..+| ++.+ .+.+...++.+.+... |..+....+- -.+++.+.+
T Consensus 16 vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~ 81 (267)
T 1iy8_A 16 VLITGGGSGLGRATAVRLAAE----------GAKL-SLVD--VSSEGLEASKAAVLETAPDAEVLTTVAD-VSDEAQVEA 81 (267)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHCTTCCEEEEECC-TTSHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhhcCCceEEEEEcc-CCCHHHHHH
Confidence 666776654444444443331 1245 3332 3455566666666554 5444332222 345666666
Q ss_pred HHHHHhh--cCCeEEEEEcCCC
Q 013701 317 YASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~~ 336 (438)
++++..+ .+++++|-.||..
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~ 103 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAGIE 103 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCcC
Confidence 6655422 2688888888754
No 275
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=30.88 E-value=1.2e+02 Score=27.69 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=47.4
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.++++|.+-.--..-+...+.. ..+| ++.. .+.+...++.+.+...|..+..-.+- -.+++.+.++
T Consensus 36 ~vlVTGas~gIG~aia~~L~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~ 101 (291)
T 3cxt_A 36 IALVTGASYGIGFAIASAYAKA----------GATI-VFND--INQELVDRGMAAYKAAGINAHGYVCD-VTDEDGIQAM 101 (291)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT----------TCEE-EEEE--SSHHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCeEEEEEec-CCCHHHHHHH
Confidence 3677777654444444444331 2345 3332 34566677777777777554333222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
++...+ .+++++|-.||..
T Consensus 102 ~~~~~~~~g~iD~lvnnAg~~ 122 (291)
T 3cxt_A 102 VAQIESEVGIIDILVNNAGII 122 (291)
T ss_dssp HHHHHHHTCCCCEEEECCCCC
T ss_pred HHHHHHHcCCCcEEEECCCcC
Confidence 655432 2488999888754
No 276
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=30.79 E-value=2.9e+02 Score=24.56 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=38.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
+|.++.-+..+.+.+.++.+.+...|.++..-.+- -.+++.+.+++++..+. +++++|-.||.
T Consensus 37 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 37 NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSD-LSNEEEVAKLFDFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECC-CCSHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 55444334556777888888887777664433222 34566667666554332 57788888874
No 277
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=30.76 E-value=3e+02 Score=24.84 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA- 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~- 345 (438)
+++|+++.-..++ ......+.+.+.++|+.+... ..+.++++-.+.++.+...+++.+|+..-........+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQ--YADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEE--ECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEe--eCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 4577777755433 233444556777888875543 4678888888888887778888777654332233333322
Q ss_pred -CCCCCEEEec
Q 013701 346 -RTPLPVIGVP 355 (438)
Q Consensus 346 -~~~~pVI~~p 355 (438)
....|||.+-
T Consensus 81 ~~~giPvV~~~ 91 (330)
T 3uug_A 81 GEQGIKVIAYD 91 (330)
T ss_dssp HHTTCEEEEES
T ss_pred HHCCCCEEEEC
Confidence 2456887763
No 278
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=30.69 E-value=2e+02 Score=25.86 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+...+.+..+.+...|..+....+. -.+++.+.+++++..+ ..++++|-.||..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 57 SPDDLSETVRLVEAANRRIVAAVVD-TRDFDRLRKVVDDGVAALGRLDIIVANAGVA 112 (277)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5666677777777766665444333 4456666666655322 2577888777654
No 279
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=30.60 E-value=64 Score=23.12 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 280 DSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 280 ~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
.+.-+.+..+...|.++|++++.........+....++.
T Consensus 11 ~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~ 49 (89)
T 3msz_A 11 RNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEM 49 (89)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHH
Confidence 345799999999999999998776554444333334443
No 280
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=30.60 E-value=4.6e+02 Score=27.46 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=66.0
Q ss_pred ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec------
Q 013701 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------ 307 (438)
Q Consensus 234 ~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------ 307 (438)
..+=..+..|+|..++.++-.+..+.-..+| ...-|.- ...-+..+.+.++++++.+++.|+++++-+...
T Consensus 143 g~lD~y~~~G~~~~~v~~~Y~~ltG~p~~pP--~WalG~~-qsr~~y~~~~ev~~v~~~~~~~~IP~dvi~lD~~y~~~~ 219 (693)
T 2g3m_A 143 DSVEFYVIEGPRIEDVLEKYTELTGKPFLPP--MWAFGYM-ISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSY 219 (693)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHCCCCCCC--GGGGSEE-EEETTCCSHHHHHHHHHHHHHTTCCEEEEEECGGGSBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHhCCCCCCc--ccccCcc-ccCCcCCCHHHHHHHHHHHHHcCCCcceEEEecceecCC
Confidence 3444566799999999998888877644321 0001221 234456688999999999999999999887653
Q ss_pred -------CCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 308 -------HRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 308 -------h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+|=|+ ..++++++.+.|+++.+.+
T Consensus 220 ~dft~d~~~FPd-p~~mv~~Lh~~G~k~~l~i 250 (693)
T 2g3m_A 220 KLFTWHPYRFPE-PKKLIDELHKRNVKLITIV 250 (693)
T ss_dssp BTTCCCTTTCSC-HHHHHHHHHHTTCEEEEEE
T ss_pred ccceEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 23343 5677888899999966655
No 281
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=30.55 E-value=1.5e+02 Score=27.50 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
+.+.+.+..+.+...|..+....+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 91 SPEELKETVRLVEEQGRRIIARQAD-VRDLASLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4677788888888888776544333 45677777777654332 688999988754
No 282
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=30.45 E-value=1.6e+02 Score=25.82 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=44.7
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.--..-+...++. ..+| ++.+ .+.+...+..+.+...|.++..-.+. -.+++.+.+.
T Consensus 15 ~vlItGasggiG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 80 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEA----------GARV-IIAD--LDEAMATKAVEDLRMEGHDVSSVVMD-VTNTESVQNA 80 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHH
Confidence 3666776654444444444331 1245 3332 34455556666666666554433222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 81 ~~~~~~~~~~id~vi~~Ag~~ 101 (260)
T 3awd_A 81 VRSVHEQEGRVDILVACAGIC 101 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 654322 2678888888743
No 283
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=30.23 E-value=94 Score=27.31 Aligned_cols=55 Identities=5% Similarity=0.028 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCC-cEEEEEEec-CCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTMFSV-PHEVRIVSA-HRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~-~~~~~v~s~-h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
.+.+...++.+.+...|. ......+.. ..+++.+.++++...+. +++++|-.||.
T Consensus 46 r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 46 RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 345556666666666552 222221111 13445555555443222 56677777664
No 284
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=30.13 E-value=1.1e+02 Score=28.92 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEI 328 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v 328 (438)
++|.|++|.-.+=....-+++.|...|+++.+-..+..........-++.++..|.++
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~a~~~~~~~~~~g~~~ 190 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQ 190 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCSSCCHHHHHHHHHHHTSSCEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCCCCCHHHHHHHHHHHHcCCcc
Confidence 4788999988888899999999999999877654442222334444455555556553
No 285
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=30.07 E-value=2.1e+02 Score=25.55 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=50.6
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+.+.+.. ..+|.++. ..+.+...++.+.+...|-++..-.+. -.+++.+.++
T Consensus 28 ~vlITGas~gIG~a~a~~l~~~----------G~~V~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~ 94 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAARQ----------GWRVGVNY--AANREAADAVVAAITESGGEAVAIPGD-VGNAADIAAM 94 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEEEEEE--SSCHHHHHHHHHHHHHTTCEEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEEEEEc--CCChhHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 4677777755444444444431 23453332 345667777777788777665443332 3456667777
Q ss_pred HHHHhhc--CCeEEEEEcCCC
Q 013701 318 ASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~~--g~~v~i~~ag~~ 336 (438)
+++..+. +++++|-.||..
T Consensus 95 ~~~~~~~~g~id~li~nAg~~ 115 (272)
T 4e3z_A 95 FSAVDRQFGRLDGLVNNAGIV 115 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHhCCCCCEEEECCCCC
Confidence 6655332 688888888754
No 286
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=29.70 E-value=73 Score=29.02 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=5.1
Q ss_pred CCeEEEEEcC
Q 013701 325 GIEIIIAGAG 334 (438)
Q Consensus 325 g~~v~i~~ag 334 (438)
+++++|-.||
T Consensus 91 ~iD~lv~nAg 100 (311)
T 3o26_A 91 KLDILVNNAG 100 (311)
T ss_dssp SCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 3555555554
No 287
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=29.70 E-value=1.2e+02 Score=27.73 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCc--------hhhhhcCCCCCEEEecC
Q 013701 285 VMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHL--------PGMVAARTPLPVIGVPV 356 (438)
Q Consensus 285 ~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l--------~~~i~~~~~~pVI~~p~ 356 (438)
.+.++.+.+...|++++..+.. +++|.. .+++.+++.+++.+|....+...+ ..-+..+...||+-||.
T Consensus 74 ~l~~~~~~~~~~~v~~~~~~~~-~g~~~~--~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 74 WIKQQARYYLEAGIQIDIKVIW-HNRPYE--AIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEE-CSCHHH--HHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHHHHhhcCCeEEEEEEe-cCChHH--HHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecC
Confidence 4445555566778887776542 344432 334444556788666665332222 22244567788888886
Q ss_pred C
Q 013701 357 R 357 (438)
Q Consensus 357 ~ 357 (438)
.
T Consensus 151 ~ 151 (319)
T 3olq_A 151 K 151 (319)
T ss_dssp S
T ss_pred c
Confidence 4
No 288
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=29.65 E-value=1.6e+02 Score=26.71 Aligned_cols=82 Identities=9% Similarity=-0.075 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHH
Q 013701 244 SSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASS 320 (438)
Q Consensus 244 ~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~ 320 (438)
++.+.....++.+.+.++ ..++|+++.+...+ ........+.|++.|+++..... ..-+++...+.+++
T Consensus 104 d~~~~g~~a~~~L~~~~~-------G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~ 175 (313)
T 2h3h_A 104 DNYQAGYTAGLIMKELLG-------GKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILN-DEEDGARAVSLAEA 175 (313)
T ss_dssp CHHHHHHHHHHHHHHHHT-------SCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE-CSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-------CCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeec-CCCCHHHHHHHHHH
Confidence 344444444444554432 23689888876433 23445555677778988654332 23444444444433
Q ss_pred H-hh-cCCeEEEEEc
Q 013701 321 A-HE-RGIEIIIAGA 333 (438)
Q Consensus 321 ~-~~-~g~~v~i~~a 333 (438)
+ .. ..++++++..
T Consensus 176 ~l~~~~~~~ai~~~~ 190 (313)
T 2h3h_A 176 ALNAHPDLDAFFGVY 190 (313)
T ss_dssp HHHHCTTCCEEEECS
T ss_pred HHHHCcCceEEEEcC
Confidence 3 22 2456777654
No 289
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=29.57 E-value=1.4e+02 Score=26.29 Aligned_cols=85 Identities=9% Similarity=0.120 Sum_probs=45.8
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++.. .++.+...++++.+...|-++..-.+. -.+++.+.+++
T Consensus 7 vlVTGas~giG~~ia~~l~~~----------G~~V-~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 73 (246)
T 2uvd_A 7 ALVTGASRGIGRAIAIDLAKQ----------GANV-VVNY-AGNEQKANEVVDEIKKLGSDAIAVRAD-VANAEDVTNMV 73 (246)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEEE-SSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHC----------CCEE-EEEe-CCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 566776654433444443331 1245 3332 225566667777777766554433222 34566666666
Q ss_pred HHHhh--cCCeEEEEEcCCC
Q 013701 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 74 ~~~~~~~g~id~lv~nAg~~ 93 (246)
T 2uvd_A 74 KQTVDVFGQVDILVNNAGVT 93 (246)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 54432 2688888888754
No 290
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=29.39 E-value=2.5e+02 Score=25.19 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=49.3
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++. ...+.....++...+...|..+..-.+- -.+++.+.+++
T Consensus 34 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D-v~d~~~v~~~~ 100 (271)
T 3v2g_A 34 AFVTGGSRGIGAAIAKRLALE----------GAAV-ALT-YVNAAERAQAVVSEIEQAGGRAVAIRAD-NRDAEAIEQAI 100 (271)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEE-ESSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE-eCCCHHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 566776644333333433331 2345 333 2345667778888888888775443322 45677777777
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~ 120 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGIW 120 (271)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCcEEEECCCCC
Confidence 654332 688888888754
No 291
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=29.38 E-value=1.3e+02 Score=26.73 Aligned_cols=85 Identities=7% Similarity=0.039 Sum_probs=45.5
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.--..-+...+.. ...| ++.. .+.....++...+...|..+....+. -.+++.+.++
T Consensus 16 ~vlITGasggiG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 81 (266)
T 1xq1_A 16 TVLVTGGTKGIGHAIVEEFAGF----------GAVI-HTCA--RNEYELNECLSKWQKKGFQVTGSVCD-ASLRPEREKL 81 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHhcCCeeEEEECC-CCCHHHHHHH
Confidence 3677777655444444444331 1244 3332 34556666666676666655443332 3345556666
Q ss_pred HHHHhh---cCCeEEEEEcCCC
Q 013701 318 ASSAHE---RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~---~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~ 103 (266)
T 1xq1_A 82 MQTVSSMFGGKLDILINNLGAI 103 (266)
T ss_dssp HHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHHHhCCCCcEEEECCCCC
Confidence 654332 4688888888753
No 292
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=29.38 E-value=3.8e+02 Score=25.51 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=17.5
Q ss_pred EEEecCCCHHHHHHHHHHHHH-c-CCcEEEE
Q 013701 275 IIMGSDSDLPVMKDAAKILTM-F-SVPHEVR 303 (438)
Q Consensus 275 iv~gs~sD~~~~~~~~~~L~~-~-G~~~~~~ 303 (438)
.|.++.|-...+.++++.+.+ . |+++...
T Consensus 46 ~V~~a~sl~~~~~~l~~~Fe~~~pgv~V~~~ 76 (354)
T 3k6v_A 46 TVFHAGSLSVPFEELEAEFEAQHPGVDVQRE 76 (354)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEecchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 333344556677777777765 3 6776655
No 293
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=29.30 E-value=1.5e+02 Score=26.66 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCC---cEEEEEEecCCChhHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s~h~~~~~~~ 315 (438)
++++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.++...+...|. .+..-.+- -.+++.+.
T Consensus 9 vlVTGas~gIG~~ia~~l~~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~ 74 (280)
T 1xkq_A 9 VIITGSSNGIGRTTAILFAQE----------GANV-TIT--GRSSERLEETRQIILKSGVSEKQVNSVVAD-VTTEDGQD 74 (280)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHTTTCCGGGEEEEECC-TTSHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHHcCCCCcceEEEEec-CCCHHHHH
Confidence 666776654333334443331 1245 333 2345666666666666554 44332222 34566666
Q ss_pred HHHHHHhh--cCCeEEEEEcCCC
Q 013701 316 SYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 316 ~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++++..+ .+++++|-.||..
T Consensus 75 ~~~~~~~~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 75 QIINSTLKQFGKIDVLVNNAGAA 97 (280)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHhcCCCCEEEECCCCC
Confidence 66654422 2588999888754
No 294
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=29.26 E-value=1.2e+02 Score=27.34 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=45.0
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEecCCChhHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
|+++|.+-.=-..-+...+.. ..+| ++.+ .+.+.+.++.+.+.+ .|.++..-.+- -.+++.+.++
T Consensus 23 vlVTGas~gIG~aia~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~v~~~ 88 (266)
T 4egf_A 23 ALITGATKGIGADIARAFAAA----------GARL-VLSG--RDVSELDAARRALGEQFGTDVHTVAID-LAEPDAPAEL 88 (266)
T ss_dssp EEETTTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHHCCCEEEEECC-TTSTTHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHH
Confidence 666776644333333333331 2244 3432 356666777766665 56554433222 3445566666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 89 ~~~~~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 89 ARRAAEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHHHHHTSCSEEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 654432 2688888888754
No 295
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=29.13 E-value=1.6e+02 Score=26.77 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHh-hcCCeEEEEEcC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH-ERGIEIIIAGAG 334 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~-~~g~~v~i~~ag 334 (438)
+++++|+|+.+ -.-..+++.|.+.|+++.+. .+|++++..+..++++ ..|.++......
T Consensus 9 ~k~~lVTGas~--GIG~aia~~la~~G~~V~~~---~~r~~~~~~~~~~~l~~~~~~~~~~~~~D 68 (291)
T 1e7w_A 9 VPVALVTGAAK--RLGRSIAEGLHAEGYAVCLH---YHRSAAEANALSATLNARRPNSAITVQAD 68 (291)
T ss_dssp CCEEEETTCSS--HHHHHHHHHHHHTTCEEEEE---ESSCHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCCeEEEE---cCCCHHHHHHHHHHHhhhcCCeeEEEEee
Confidence 56779999874 67788999999999876554 1388888777776665 445566555543
No 296
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=28.80 E-value=1.3e+02 Score=26.55 Aligned_cols=51 Identities=10% Similarity=0.164 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAG 334 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag 334 (438)
.+...++.+.+...|-.+..-.+. -.+++.+.+++++..+. +++++|-.||
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~g~id~li~~Ag 91 (276)
T 1wma_A 39 VTRGQAAVQQLQAEGLSPRFHQLD-IDDLQSIRALRDFLRKEYGGLDVLVNNAG 91 (276)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred hHHHHHHHHHHHhcCCeeEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 444444455555444333322222 23344444444433221 4555555554
No 297
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=28.77 E-value=1.5e+02 Score=27.24 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHcCCcEEEEEE-e--cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013701 292 ILTMFSVPHEVRIV-S--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 292 ~L~~~G~~~~~~v~-s--~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
..+.+|++....+. | ..=+|.++.++++.+++++++++..-...++.+...|+..+-.+|+.+.+
T Consensus 190 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~~ 257 (284)
T 3cx3_A 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNP 257 (284)
T ss_dssp HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECCC
T ss_pred HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEecC
Confidence 44679999654432 2 34568899999999999999999888888888999999999999987643
No 298
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=28.53 E-value=1.4e+02 Score=29.67 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=41.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC---hhHHHHHHHHHhhcCCeEEEEEc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT---PDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~---~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
..|.|+..++.....+.++++.|...|+.++.. .+. ...+.+-++.+...|++..+++.
T Consensus 355 ~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d----~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 355 VDVYVVHQGDAAREQAFIVAERLRDTGLDVILH----CSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHHHHTTCCEEEC----CCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEE----cccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 456666656556778999999999999998876 331 22355566667888999655543
No 299
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=28.43 E-value=1.5e+02 Score=26.13 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 310 TPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 310 ~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
+++.+.+++++..+ .+++++|-.||.
T Consensus 66 d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 66 NPESIEAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 44445555544322 257777777764
No 300
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=28.35 E-value=3.3e+02 Score=24.55 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE-e----cCCChhHHHHH
Q 013701 243 GSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV-S----AHRTPDLMFSY 317 (438)
Q Consensus 243 G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~-s----~h~~~~~~~~~ 317 (438)
.+.-++|...|.+..+. .. ...-+++++|... +.++.+.+..+|..--..+. . +|-+|..+.+.
T Consensus 36 np~d~~Ale~A~~Lke~-g~------~~~V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~a~~ 104 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQ------AEEIIAVSIGVKQ----AAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKI 104 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TS------CSEEEEEEEESGG----GHHHHHHHHHHTCSEEEEEECCSSTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CC------CceEEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHH
Confidence 34445677766665432 10 0012445666432 34455555667998555544 2 36678888887
Q ss_pred HHHH-hhcCCeEEEEEc----CCCCCchhhhhcCCCCCEEEe
Q 013701 318 ASSA-HERGIEIIIAGA----GGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~-~~~g~~v~i~~a----g~~~~l~~~i~~~~~~pVI~~ 354 (438)
+..+ ++.+++++++.+ |..+.++..+|.+...|.+.-
T Consensus 105 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~ 146 (252)
T 1efp_B 105 LAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATF 146 (252)
T ss_dssp HHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccc
Confidence 7664 445678888877 234789999999999998843
No 301
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=28.27 E-value=2.5e+02 Score=23.76 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--hhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~--~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+++.|++ ..+..+..++..|...|+++..- |+. .++-.+.++.+++..++|+++.
T Consensus 55 ~~~lVF~---~~~~~~~~l~~~L~~~g~~~~~l----hg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 55 PPVLIFA---EKKADVDAIHEYLLLKGVEAVAI----HGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp SCEEEEC---SCHHHHHHHHHHHHHHTCCEEEE----CTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCEEEEE---CCHHHHHHHHHHHHHcCCcEEEE----eCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 3554555 34788999999999999986554 665 4445556777777667777764
No 302
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=28.24 E-value=87 Score=28.87 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCe
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIE 327 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~ 327 (438)
++|.|+.|.-.+=-...-+++.|...|+++.+-..+. +........++.++..|++
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~-~~~~~~~~~~~~~~~~g~~ 135 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKR-PNKPLFTGLVTQCQKMDIP 135 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSC-CSSHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEeCC-CCCHHHHHHHHHHHHcCCc
Confidence 4788888888888888889999999998876643332 2233334444455555554
No 303
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=28.14 E-value=2.8e+02 Score=24.69 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
.....++...+...|-.+..-.+. -.+++.+.+++++..+. +++++|-.||.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 109 (287)
T 3pxx_A 56 SRDLEEAGLEVEKTGRKAYTAEVD-VRDRAAVSRELANAVAEFGKLDVVVANAGI 109 (287)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred hHHHHHHHHHHHhcCCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 445555555555555554333222 34566665555544322 56677766664
No 304
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=27.85 E-value=3.2e+02 Score=24.19 Aligned_cols=82 Identities=5% Similarity=-0.019 Sum_probs=49.2
Q ss_pred CCeEEEEEec-C---CC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchh
Q 013701 270 LPRIGIIMGS-D---SD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPG 341 (438)
Q Consensus 270 ~~~v~iv~gs-~---sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~ 341 (438)
+.+|+++.-. . ++ ......+.+.+.+.|+.+.. .....+++...++++.+...+++.+|+.... ......
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 81 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQ 81 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHH
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCcHHHH
Confidence 4567777643 2 22 34555666778889987644 3445566666667777777889977765432 222222
Q ss_pred hhhcCCCCCEEEe
Q 013701 342 MVAARTPLPVIGV 354 (438)
Q Consensus 342 ~i~~~~~~pVI~~ 354 (438)
.+.. ...|||.+
T Consensus 82 ~l~~-~~iPvV~~ 93 (287)
T 3bbl_A 82 FLLK-QKFPFVAF 93 (287)
T ss_dssp HHHH-TTCCEEEE
T ss_pred HHHh-cCCCEEEE
Confidence 3322 45788876
No 305
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=27.84 E-value=1.3e+02 Score=27.98 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=45.4
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCC--cEEEEEEecCCChhHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV--PHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~--~~~~~v~s~h~~~~~~~ 315 (438)
.|+++|.+-.=...-+...+.. ..+| +++ +.+.+.+.++.+.+...|. .+..-.+- -.+++.+.
T Consensus 10 ~vlVTGas~gIG~~la~~l~~~----------G~~V-v~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~~~~~v~ 75 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLNQ----------GCKV-AIA--DIRQDSIDKALATLEAEGSGPEVMGVQLD-VASREGFK 75 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHTCGGGEEEEECC-TTCHHHHH
T ss_pred EEEEcCCchHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCHHHHH
Confidence 3566666544344444444331 1244 343 2356667777777776665 33332222 34566666
Q ss_pred HHHHHHhh--cCCeEEEEEcCCC
Q 013701 316 SYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 316 ~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
++++.+.+ .+++++|-.||..
T Consensus 76 ~~~~~~~~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 76 MAADEVEARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHHHHHHHHTCCEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCCEEEECCCcC
Confidence 66655433 2578888888753
No 306
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=27.79 E-value=92 Score=30.11 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCc
Q 013701 311 PDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNA 387 (438)
Q Consensus 311 ~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~ 387 (438)
-+++.+++.++++.|- .+.|++ ..-+-|||.+ +.-++-+|+.|+.+-|. || |--|.|+.+
T Consensus 186 ~~~m~~~I~~~k~~gD-----------S~GGvv----e~v~~gvP~GLG~pvfdkLda~LA~AlmS--I~AvKGvEiG~G 248 (370)
T 1sq1_A 186 ESDFKNEILNARNSKD-----------SVGAAV----FTKVSGMLIGLGEVLYDKLDSKLAHALMG--INAVKAVEIGEG 248 (370)
T ss_dssp HHHHHHHHHHHHHTTC-----------CCCEEE----EEEEESCCBSCSBTTTBCHHHHHHHHHHT--STTEEEEEETTG
T ss_pred HHHHHHHHHHHHHhCC-----------CCeEEE----EEEEEcCCCCCCCcccccchHHHHHHhcC--ccceeEEEeccc
Confidence 3457777877776553 222222 2234466664 33478899989777773 23 558899988
Q ss_pred chHHH
Q 013701 388 TNAGL 392 (438)
Q Consensus 388 ~~Aa~ 392 (438)
+.+|.
T Consensus 249 F~~a~ 253 (370)
T 1sq1_A 249 INASK 253 (370)
T ss_dssp GGGGG
T ss_pred hhhhh
Confidence 87663
No 307
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=27.74 E-value=1.6e+02 Score=27.25 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=50.0
Q ss_pred HHHHcCCcEEEEEEe----cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe-cC
Q 013701 292 ILTMFSVPHEVRIVS----AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV-PV 356 (438)
Q Consensus 292 ~L~~~G~~~~~~v~s----~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~-p~ 356 (438)
.++.+|++... +.+ ..=+|..+.++++.+++++++++..-...++.+...|+..+-.+|+.+ |.
T Consensus 192 f~~~yGl~~~~-~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~pl 260 (286)
T 3gi1_A 192 LAKRFGLKQLG-ISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPL 260 (286)
T ss_dssp HHHHTTCEEEE-EECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCCS
T ss_pred HHHHCCCeEee-ccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEeccc
Confidence 45679998544 322 245688999999999999999999988888899999998888888865 44
No 308
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=27.66 E-value=1.2e+02 Score=28.92 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC-hhHHHHHHHHHhhcCCeE
Q 013701 279 SDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT-PDLMFSYASSAHERGIEI 328 (438)
Q Consensus 279 s~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~-~~~~~~~~~~~~~~g~~v 328 (438)
+.+|.+.+.++.+.+++.|+.+...+..++++ |+++.++.+.+.+-|+.+
T Consensus 115 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~ 165 (345)
T 1nvm_A 115 HCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATC 165 (345)
T ss_dssp ETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSE
T ss_pred eccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCE
Confidence 44555566666666666666666665555555 345566666666656653
No 309
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=27.30 E-value=2.3e+02 Score=28.13 Aligned_cols=89 Identities=16% Similarity=0.001 Sum_probs=54.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCC---CHHHHHHHHHHHHHc--------------CC
Q 013701 236 MGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDS---DLPVMKDAAKILTMF--------------SV 298 (438)
Q Consensus 236 iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~s---D~~~~~~~~~~L~~~--------------G~ 298 (438)
++|=.+.| +.+-.+..+..... ..+++ .. ..-.|.|+..++. -.+.+.++++.|... |+
T Consensus 315 ~ih~~~~G-g~eRli~~Lie~~~-g~~P~-~l-aP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi 390 (460)
T 3uh0_A 315 MIHRATFG-SIERFMALLIDSNE-GRWPF-WL-NPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHF 390 (460)
T ss_dssp EEEEEEEE-EHHHHHHHHHHHHT-TCCCG-GG-CSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCC
T ss_pred EEecCcch-HHHHHHHHHHHHcC-CCCCC-CC-CCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCE
Confidence 56666788 77665554443322 11211 11 1235767777766 467888899999988 99
Q ss_pred cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 299 PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 299 ~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.+++. .|. ..+-+=++++...|++..+++-
T Consensus 391 ~v~~D----~~~-~~lg~k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 391 NVDLD----IRN-EPVGYRIKSAILKNYSYLIIVG 420 (460)
T ss_dssp CEEEC----CCS-SCHHHHHHHHHHHTCSEEEEEC
T ss_pred EEEEE----CCC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 98887 331 2345555666778999666553
No 310
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=27.29 E-value=3.5e+02 Score=24.47 Aligned_cols=102 Identities=9% Similarity=0.111 Sum_probs=63.0
Q ss_pred ecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE-e----cCCChhHHHH
Q 013701 242 VGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV-S----AHRTPDLMFS 316 (438)
Q Consensus 242 ~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~-s----~h~~~~~~~~ 316 (438)
..+.-++|+..|.+..+. .. ...-+++++|... +.++.+.+..+|..--..+. . +|-.|..+++
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~------~~~V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~A~ 106 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KL------VKEVIAVSCGPAQ----CQETIRTALAMGADRGIHVEVPPAEAERLGPLQVAR 106 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TS------CSEEEEEEEESTT----HHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CC------CceEEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHH
Confidence 334445677766665432 10 0012445566432 44555555667998555544 2 3667888888
Q ss_pred HHHHH-hhcCCeEEEEEc----CCCCCchhhhhcCCCCCEEEe
Q 013701 317 YASSA-HERGIEIIIAGA----GGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 317 ~~~~~-~~~g~~v~i~~a----g~~~~l~~~i~~~~~~pVI~~ 354 (438)
.+..+ ++.+.+++++.+ |..+.++..+|.+...|.+.-
T Consensus 107 ~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~ 149 (255)
T 1efv_B 107 VLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTF 149 (255)
T ss_dssp HHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccc
Confidence 77654 445678888877 234789999999999998843
No 311
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=27.08 E-value=2.7e+02 Score=24.87 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-+.-+.+.+.. ..+|.++. .++.....++++.+...|-.+..-.+- -.+++.+.+++
T Consensus 30 ~lVTGas~GIG~aia~~la~~----------G~~Vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~ 96 (267)
T 3u5t_A 30 AIVTGASRGIGAAIAARLASD----------GFTVVINY--AGKAAAAEEVAGKIEAAGGKALTAQAD-VSDPAAVRRLF 96 (267)
T ss_dssp EEEESCSSHHHHHHHHHHHHH----------TCEEEEEE--SSCSHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC----------CCEEEEEc--CCCHHHHHHHHHHHHhcCCeEEEEEcC-CCCHHHHHHHH
Confidence 566666644333334443332 23453332 234566777888888888765443332 45677777777
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 97 ~~~~~~~g~iD~lvnnAG~~ 116 (267)
T 3u5t_A 97 ATAEEAFGGVDVLVNNAGIM 116 (267)
T ss_dssp HHHHHHHSCEEEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 665432 688888888754
No 312
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=27.06 E-value=2e+02 Score=25.78 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=48.4
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+..=-..-+...+.. ..+| ++.. ..+.....++.+.+...|-.+..-.+- -.+++.+.+++
T Consensus 21 ~lVTGas~gIG~aia~~l~~~----------G~~V-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~ 87 (270)
T 3is3_A 21 ALVTGSGRGIGAAVAVHLGRL----------GAKV-VVNY-ANSTKDAEKVVSEIKALGSDAIAIKAD-IRQVPEIVKLF 87 (270)
T ss_dssp EEESCTTSHHHHHHHHHHHHT----------TCEE-EEEE-SSCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHC----------CCEE-EEEc-CCCHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHHH
Confidence 566676644333334433331 2345 3332 345666777778888888765443322 44566777777
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 88 ~~~~~~~g~id~lvnnAg~~ 107 (270)
T 3is3_A 88 DQAVAHFGHLDIAVSNSGVV 107 (270)
T ss_dssp HHHHHHHSCCCEEECCCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 654332 678888888754
No 313
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=27.04 E-value=1.5e+02 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 310 TPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 310 ~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
+++...+++++..+. +++++|-.||.
T Consensus 75 ~~~~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 75 TSENCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 344444444433221 45666666653
No 314
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=27.00 E-value=1.2e+02 Score=27.78 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcC-CcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 283 LPVMKDAAKILTMFS-VPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G-~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+...++...+...| -.+..-.+- -.+++.+.+++++..+ .+++++|-.||..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 130 (293)
T 3rih_A 75 PRELSSVTAELGELGAGNVIGVRLD-VSDPGSCADAARTVVDAFGALDVVCANAGIF 130 (293)
T ss_dssp GGGGHHHHHHHTTSSSSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEe-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 444556666666665 233222111 3455666665554322 2577888888754
No 315
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.98 E-value=3.2e+02 Score=23.99 Aligned_cols=83 Identities=6% Similarity=0.006 Sum_probs=45.0
Q ss_pred CCeEEEEEec--CCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC-Cchhhh
Q 013701 270 LPRIGIIMGS--DSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA-HLPGMV 343 (438)
Q Consensus 270 ~~~v~iv~gs--~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~-~l~~~i 343 (438)
+.+|++++.. .++ ......+.+.+.+.|+.+.. .....+++...+.++.+...+++.+|....... .....+
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l 96 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL--ADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDI 96 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE--ECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHH
Confidence 3567777643 222 23444555666778876543 345566776677777776777886665543211 111222
Q ss_pred hcCCCCCEEEe
Q 013701 344 AARTPLPVIGV 354 (438)
Q Consensus 344 ~~~~~~pVI~~ 354 (438)
......|||.+
T Consensus 97 ~~~~~iPvV~~ 107 (296)
T 3brq_A 97 IDAHSQPIMVL 107 (296)
T ss_dssp HHTCSSCEEEE
T ss_pred HhcCCCCEEEE
Confidence 22145677765
No 316
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=26.88 E-value=2.5e+02 Score=24.61 Aligned_cols=55 Identities=7% Similarity=0.053 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+.+...++.+.+...|.++..-.+. -.+++.+.+++++..+. +++++|-.||..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~ 93 (246)
T 3osu_A 37 GSKEKAEAVVEEIKAKGVDSFAIQAN-VADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93 (246)
T ss_dssp SCHHHHHHHHHHHHHTTSCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 35566777777777777665433222 34566666666544322 577888777643
No 317
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.84 E-value=1.6e+02 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=26.7
Q ss_pred eEEEEEec--CCCHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 013701 272 RIGIIMGS--DSDLPVMKDAAKILTMFSVPHEVRIVSAHR 309 (438)
Q Consensus 272 ~v~iv~gs--~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~ 309 (438)
++.+++++ .+. -.+.++.+.+.+.|++++....|.+.
T Consensus 6 kIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~ 44 (109)
T 2l2q_A 6 NILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETR 44 (109)
T ss_dssp EEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTT
T ss_pred EEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 56677653 223 55568889999999998888777666
No 318
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=26.78 E-value=1.8e+02 Score=26.65 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=48.5
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCC---cEEEEEEecCCChhHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV---PHEVRIVSAHRTPDLM 314 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~---~~~~~v~s~h~~~~~~ 314 (438)
.++++|.+-.=-..-+...+.. ..+| ++. +.+.+.+.++.+.+...|. .+..-.+- -.+++.+
T Consensus 28 ~vlVTGas~gIG~aia~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~~D-v~d~~~v 93 (297)
T 1xhl_A 28 SVIITGSSNGIGRSAAVIFAKE----------GAQV-TIT--GRNEDRLEETKQQILKAGVPAEKINAVVAD-VTEASGQ 93 (297)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEECC-TTSHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcCCCCceEEEEecC-CCCHHHH
Confidence 3677777755444444444431 2345 333 2456667777777777665 44332222 4556667
Q ss_pred HHHHHHHhh--cCCeEEEEEcCCC
Q 013701 315 FSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 315 ~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+++++..+ .+++++|-.||..
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 94 DDIINTTLAKFGKIDILVNNAGAN 117 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCcC
Confidence 776655422 2688999999854
No 319
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=26.64 E-value=1.7e+02 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+...+..+.+...|-.+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 59 PEELAATVKLVEDIGSRIVARQAD-VRDRESLSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECC-TTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred hHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 556666666666666554433222 44566666666554322 577777777653
No 320
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=26.55 E-value=3.2e+02 Score=29.67 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=66.5
Q ss_pred ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec------
Q 013701 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------ 307 (438)
Q Consensus 234 ~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------ 307 (438)
..+=..+..|+|.+++.++-....+.-..+| ...-|-- ...=+..+.+.++++++.+++.|+++++-+...
T Consensus 258 g~lD~y~~~Gptp~~Vv~~Y~~ltG~p~lpP--~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~ 334 (875)
T 3l4y_A 258 GILDFYVFLGNTPEQVVQEYLELIGRPALPS--YWALGFH-LSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDER 334 (875)
T ss_dssp SCEEEEEEEESSHHHHHHHHHHHHCCCCCCC--GGGGSEE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSBTT
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHhCCCCCCC--ccccccc-eeccCCCCHHHHHHHHHHHHhcCCCCceEEEccchhcCC
Confidence 4455566789999999999998888654321 0011211 222245678999999999999999999887532
Q ss_pred -------CCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 308 -------HRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 308 -------h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|=|+ ..++++++.+.|+++.+.+.
T Consensus 335 ~dFt~D~~~FPd-p~~mv~~Lh~~G~k~v~~id 366 (875)
T 3l4y_A 335 RDFTYDSVDFKG-FPEFVNELHNNGQKLVIIVD 366 (875)
T ss_dssp BTTCCCTTTTTT-HHHHHHHHHHTTCEEEEEEC
T ss_pred CceeeChhhCCC-HHHHHHHHHHCCCEEEEEeC
Confidence 23343 67788888999999666543
No 321
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.48 E-value=2.8e+02 Score=24.70 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+.+|++++-..++ ......+.+.+.+.|+.+.. .....+++...++++.+..++++.+|..
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 79 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFM 79 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 3456666533222 22333444555666765433 2345556555666666666667755544
No 322
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=26.42 E-value=1.5e+02 Score=26.80 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=43.7
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++. +.+.+...+.++.+...| .+..-.+- -.+++.+.+++
T Consensus 32 vlVTGas~gIG~aia~~L~~~----------G~~V-~~~--~r~~~~~~~~~~~l~~~~-~~~~~~~D-v~d~~~v~~~~ 96 (276)
T 2b4q_A 32 ALVTGGSRGIGQMIAQGLLEA----------GARV-FIC--ARDAEACADTATRLSAYG-DCQAIPAD-LSSEAGARRLA 96 (276)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--CSCHHHHHHHHHHHTTSS-CEEECCCC-TTSHHHHHHHH
T ss_pred EEEeCCCChHHHHHHHHHHHC----------CCEE-EEE--eCCHHHHHHHHHHHHhcC-ceEEEEee-CCCHHHHHHHH
Confidence 667777654434444443331 1245 333 345566666666666555 43222111 34566666666
Q ss_pred HHHhh--cCCeEEEEEcCCC
Q 013701 319 SSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~--~g~~v~i~~ag~~ 336 (438)
++..+ .+++++|-.||..
T Consensus 97 ~~~~~~~g~iD~lvnnAg~~ 116 (276)
T 2b4q_A 97 QALGELSARLDILVNNAGTS 116 (276)
T ss_dssp HHHHHHCSCCSEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 55432 2688999888743
No 323
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=26.39 E-value=2e+02 Score=26.03 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-------------CCChhHHHHHHHHHhh--cCCeEEEEEcC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-------------HRTPDLMFSYASSAHE--RGIEIIIAGAG 334 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-------------h~~~~~~~~~~~~~~~--~g~~v~i~~ag 334 (438)
++++++|+|+.+ -.-..+++.|.+.|.++...--+. -.+++...++++...+ .+++++|-.||
T Consensus 10 ~GK~alVTGas~--GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG 87 (261)
T 4h15_A 10 RGKRALITAGTK--GAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHMLG 87 (261)
T ss_dssp TTCEEEESCCSS--HHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECCC
T ss_pred CCCEEEEeccCc--HHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 578889999875 667888999999999875542110 1234556666655432 25888888887
Q ss_pred CC
Q 013701 335 GA 336 (438)
Q Consensus 335 ~~ 336 (438)
..
T Consensus 88 ~~ 89 (261)
T 4h15_A 88 GS 89 (261)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 324
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=26.24 E-value=2.1e+02 Score=25.78 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
+.+.+.++++.+...|..+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 60 TPEDLAETADLVKGHNRRIVTAEVD-VRDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHhhcCCceEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 3666677777776666654433222 45677777766654332 577888888753
No 325
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=26.24 E-value=43 Score=31.04 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=43.8
Q ss_pred CeEEEEEecC--CCHHHHHHHHHHHHHcCCcEEEEEEecC-----CChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhh
Q 013701 271 PRIGIIMGSD--SDLPVMKDAAKILTMFSVPHEVRIVSAH-----RTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMV 343 (438)
Q Consensus 271 ~~v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~~~v~s~h-----~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i 343 (438)
.+++|+.-.. .....+.++.+.|.+.|+++...-..+. ..+... .+....+++++|+ .||.+.+-.++
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~vi~-~GGDGT~l~a~ 80 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGT----LAEIGQQADLAVV-VGGDGNMLGAA 80 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEEC----HHHHHHHCSEEEE-CSCHHHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccc----hhhcccCCCEEEE-EcCcHHHHHHH
Confidence 4565654322 2245677888999999998765411100 000000 0111235676665 46777666665
Q ss_pred hcC--CCCCEEEecCC
Q 013701 344 AAR--TPLPVIGVPVR 357 (438)
Q Consensus 344 ~~~--~~~pVI~~p~~ 357 (438)
.+. ...|++|+|.+
T Consensus 81 ~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 81 RTLARYDINVIGINRG 96 (292)
T ss_dssp HHHTTSSCEEEEBCSS
T ss_pred HHhhcCCCCEEEEECC
Confidence 443 36899999864
No 326
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=26.22 E-value=2.9e+02 Score=23.19 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=40.7
Q ss_pred CeEEEEEecCCCH---HHHHHHHHHHHHcCCcEE-EEEEecCCChhHHHHHHHHH--hhcCCeEEEEEc----CCCCCc
Q 013701 271 PRIGIIMGSDSDL---PVMKDAAKILTMFSVPHE-VRIVSAHRTPDLMFSYASSA--HERGIEIIIAGA----GGAAHL 339 (438)
Q Consensus 271 ~~v~iv~gs~sD~---~~~~~~~~~L~~~G~~~~-~~v~s~h~~~~~~~~~~~~~--~~~g~~v~i~~a----g~~~~l 339 (438)
.+++|+...-.+. .-...+.+.|++.|.+++ .+|-++-=.|-...++.++. ....++.+|+.. |...|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hf 91 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHF 91 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTT
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHH
Confidence 4788888665444 455666789999996553 45555555555555444221 015688777643 554443
No 327
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=26.14 E-value=34 Score=35.98 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=14.6
Q ss_pred cEEEEecCCCCCCcCcEEeCCHHHH-HHHHHHhcCCCCcEEEeeccCC
Q 013701 19 PLMVKSKRLAYDGRGNAVAKSEEEL-SSAITALGGFDRGLYVEKWAPF 65 (438)
Q Consensus 19 PvVvKP~~~g~~g~Gv~iv~~~eel-~~~~~~~~~~~~~~lvEe~I~g 65 (438)
..|+||.. |..|.||.+.....+. .+....... +.+|+|+|++-
T Consensus 544 ~yV~KPi~-gReG~nV~I~~~~~~~~~~~~g~y~~--~~~IyQe~~~l 588 (652)
T 2vob_A 544 GYAKKPIV-GRVGSNVIITSGDGVVHAESGGKYGK--RNMIYQQLFEL 588 (652)
T ss_dssp CEEEEECC------------------------------CEEEEECCC-
T ss_pred CeEeccCC-CCCCCCEEEEcCCchhhhhcccccCC--CCeEEEecccC
Confidence 49999965 6689999998653332 111111122 44999999984
No 328
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=26.14 E-value=2.2e+02 Score=25.68 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=42.6
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc-CCcEEEEEEecCCChhHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~ 317 (438)
|+++|.+-.=-..-+...+.. ..+| ++.+ .+.+...+..+.+... |-.+..-.+. -.+++.+.+.
T Consensus 29 vlITGasggiG~~la~~L~~~----------G~~V-~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~D-l~~~~~~~~~ 94 (302)
T 1w6u_A 29 AFITGGGTGLGKGMTTLLSSL----------GAQC-VIAS--RKMDVLKATAEQISSQTGNKVHAIQCD-VRDPDMVQNT 94 (302)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHHSSCEEEEECC-TTCHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHC----------CCEE-EEEe--CCHHHHHHHHHHHHHhcCCceEEEEeC-CCCHHHHHHH
Confidence 667776644333333333331 1245 3332 3445555556555544 5444333222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
++...+ ..++++|-.||..
T Consensus 95 ~~~~~~~~g~id~li~~Ag~~ 115 (302)
T 1w6u_A 95 VSELIKVAGHPNIVINNAAGN 115 (302)
T ss_dssp HHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 655422 2467888888753
No 329
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=26.01 E-value=2.1e+02 Score=24.76 Aligned_cols=54 Identities=7% Similarity=-0.026 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+...++...+...|-.+..-.+. -.+++.+.++++...+ .+++++|-.||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~ 97 (244)
T 2bd0_A 42 TAADLEKISLECRAEGALTDTITAD-ISDMADVRRLTTHIVERYGHIDCLVNNAGVG 97 (244)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECC-TTSHHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHccCCeeeEEEec-CCCHHHHHHHHHHHHHhCCCCCEEEEcCCcC
Confidence 4556666666666666554433222 3456666666655432 2578888888753
No 330
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=25.98 E-value=2.3e+02 Score=25.57 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.++++||+|+.+ -.-..+++.|.+.|.++.+. ..+..+++.+.+ ++.|.++.....
T Consensus 8 ~GKvalVTGas~--GIG~aiA~~la~~Ga~Vvi~---~r~~~~~~~~~~---~~~g~~~~~~~~ 63 (247)
T 4hp8_A 8 EGRKALVTGANT--GLGQAIAVGLAAAGAEVVCA---ARRAPDETLDII---AKDGGNASALLI 63 (247)
T ss_dssp TTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEE---ESSCCHHHHHHH---HHTTCCEEEEEC
T ss_pred CCCEEEEeCcCC--HHHHHHHHHHHHcCCEEEEE---eCCcHHHHHHHH---HHhCCcEEEEEc
Confidence 588999999874 67788999999999987655 234455665555 556777666555
No 331
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=25.89 E-value=3.8e+02 Score=24.36 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=63.2
Q ss_pred EecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEe---cCCChhHHHHH
Q 013701 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVS---AHRTPDLMFSY 317 (438)
Q Consensus 241 ~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s---~h~~~~~~~~~ 317 (438)
...+.-.+|+..+.+..+.... ...-+++++|... +.++.+.+..+|..--..+.. .|-.|..+.+.
T Consensus 34 ~lnp~d~~ale~A~~Lke~~g~------~~~V~av~~G~~~----~~~~lr~ala~GaD~vi~v~d~~~~~~~~~~~a~~ 103 (264)
T 1o97_C 34 DLNEWDDFSLEEAMKIKESSDT------DVEVVVVSVGPDR----VDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRI 103 (264)
T ss_dssp EECHHHHHHHHHHHHHHHHCSS------CCEEEEEEESCGG----GHHHHHHHHHTTCSEEEEECCGGGTTCCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCC------CceEEEEEeCchh----HHHHHHHHHhcCCCEEEEEcCcccccCCHHHHHHH
Confidence 3444455677777766543210 0012445565432 445555666789985444433 23567777777
Q ss_pred HHHH-hhcCCeEEEEEc---C-CCCCchhhhhcCCCCCEEE
Q 013701 318 ASSA-HERGIEIIIAGA---G-GAAHLPGMVAARTPLPVIG 353 (438)
Q Consensus 318 ~~~~-~~~g~~v~i~~a---g-~~~~l~~~i~~~~~~pVI~ 353 (438)
+..+ ++.+.+++++.+ | ..+.++..+|.+...|.+.
T Consensus 104 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt 144 (264)
T 1o97_C 104 LTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAA 144 (264)
T ss_dssp HHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEE
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccc
Confidence 7654 444788888877 2 3478999999999999884
No 332
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=25.86 E-value=2.3e+02 Score=27.41 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=40.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 272 RIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
.|.|+..++.....+.++++.|... |+.++.. .+. .+..+-++.+...|++..|++
T Consensus 329 ~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d----~~~-~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 329 DIYLVASGADTQSAAMALAERLRDELPGVKLMTN----HGG-GNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp SEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEEC----CSC-CCHHHHHHHHHHHTCSEEEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEe----CCC-CCHHHHHHHHHHcCCCEEEEE
Confidence 5767776666688899999999999 9998876 322 224445555677899966655
No 333
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=25.81 E-value=46 Score=29.84 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=24.6
Q ss_pred CchhhhhcC--CCCCEEEecCC-CCCCCChhhHHHhhcCCCCCceEEEE
Q 013701 338 HLPGMVAAR--TPLPVIGVPVR-ASALDGLDSLLSIVQMPRGVPVATVA 383 (438)
Q Consensus 338 ~l~~~i~~~--~~~pVI~~p~~-~~~~~g~~~l~s~~~~~~gip~~tv~ 383 (438)
.|-.+|... ....|||+|++ .+...--+.|. +.+.+||++|+.
T Consensus 153 ~Lleli~~g~~~PalVIG~PVGFVgaaESKe~L~---~~~~~vP~I~~~ 198 (219)
T 1f2v_A 153 FLLEMLRDGAPKPAAILGMPVGFVGAAESKDALA---ENSYGVPFAIVR 198 (219)
T ss_dssp HHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHH---HCCTTCCEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEeCCCccCHHHHHHHHH---hCCCCCCEEEEe
Confidence 456666554 55669999996 21111123331 233479999875
No 334
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.79 E-value=2.4e+02 Score=26.07 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecC------C-ChhHHHHHHHHHhhcCCeEEEEEc--CCC-C-CchhhhhcC-CCCCE
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAH------R-TPDLMFSYASSAHERGIEIIIAGA--GGA-A-HLPGMVAAR-TPLPV 351 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h------~-~~~~~~~~~~~~~~~g~~v~i~~a--g~~-~-~l~~~i~~~-~~~pV 351 (438)
+.+.++.+..++.|+.+++.+...- | +|+.+.++++.+.+.|++.+..+- |.. + ....++... ...|
T Consensus 124 ~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~- 202 (302)
T 2ftp_A 124 ERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVP- 202 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSC-
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCC-
Confidence 4567777777788888776664432 2 467777777777777887554442 332 1 112222221 1122
Q ss_pred EEecCC--CCCCCChhhHHHhhcCCCCCceEEEEeC
Q 013701 352 IGVPVR--ASALDGLDSLLSIVQMPRGVPVATVAIN 385 (438)
Q Consensus 352 I~~p~~--~~~~~g~~~l~s~~~~~~gip~~tv~i~ 385 (438)
++|.. ...-.|+.---+..++..|+-...+.|+
T Consensus 203 -~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~ 237 (302)
T 2ftp_A 203 -RERLAGHFHDTYGQALANIYASLLEGIAVFDSSVA 237 (302)
T ss_dssp -GGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGG
T ss_pred -CCeEEEEeCCCccHHHHHHHHHHHhCCCEEEeccc
Confidence 23332 1122244433455566778766655554
No 335
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=25.77 E-value=1.5e+02 Score=29.52 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..++.....+.+++..|...|+.++.. .+. ..+.+-++.+...|++..+++
T Consensus 372 ~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d----~~~-~sl~~q~k~A~~~g~p~~iii 428 (465)
T 3net_A 372 AQVVVVNMQDELMPTYLKVSQQLRQAGLNVITN----FEK-RQLGKQFQAADKQGIRFCVII 428 (465)
T ss_dssp CCEEECCSCGGGHHHHHHHHHHHHHTTCCEEEC----CSC-CCHHHHHHHHHHHTCCEEEEC
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEE----eCC-CCHHHHHHHHHHcCCCEEEEE
Confidence 356566656667889999999999999998876 331 224445556677899965554
No 336
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=25.71 E-value=4.1e+02 Score=24.74 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHH-HHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcC
Q 013701 281 SDLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAG 334 (438)
Q Consensus 281 sD~~~~~~~~~~L-~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag 334 (438)
+.......++..+ .++|++.-.....-.++...+.+++..+...|++=+.+..|
T Consensus 65 ~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrG 119 (304)
T 3fst_A 65 GERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRG 119 (304)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 4456666666554 46999998888888999999999999999999997777765
No 337
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=25.66 E-value=2.1e+02 Score=25.43 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=51.1
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+...+.. ..+|.++. ..+.....+..+.+...|-.+....+. -.+++.+.++
T Consensus 28 ~vlVTGas~gIG~~la~~l~~~----------G~~v~i~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~~~~~~~~~ 94 (267)
T 4iiu_A 28 SVLVTGASKGIGRAIARQLAAD----------GFNIGVHY--HRDAAGAQETLNAIVANGGNGRLLSFD-VANREQCREV 94 (267)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT----------TCEEEEEE--SSCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC----------CCEEEEEe--CCchHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHH
Confidence 4777887755444444444431 22453333 346777778888888877765544333 4566777776
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 95 ~~~~~~~~g~id~li~nAg~~ 115 (267)
T 4iiu_A 95 LEHEIAQHGAWYGVVSNAGIA 115 (267)
T ss_dssp HHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHhCCccEEEECCCCC
Confidence 655432 2678888888754
No 338
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.58 E-value=3.6e+02 Score=24.05 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCC--HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC--Cchhhhh-
Q 013701 270 LPRIGIIMGSDSD--LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA--HLPGMVA- 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD--~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~--~l~~~i~- 344 (438)
..+++++++.... ........+.++++|+++..... .+.+...+.++++.. ...++.+....-+ .+..+..
T Consensus 133 ~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~---~~~~~~~~~~~~l~~-~~dai~~~~D~~a~g~~~~l~~~ 208 (295)
T 3lft_A 133 VKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAV---PSTNEIASTVTVMTS-KVDAIWVPIDNTIASGFPTVVSS 208 (295)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEE---SSGGGHHHHHHHHTT-TCSEEEECSCHHHHHTHHHHHHH
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEec---CCHHHHHHHHHHHHh-cCCEEEECCchhHHHHHHHHHHH
Confidence 3689899876432 34556677888899998765432 234455566655543 5677766542110 1111111
Q ss_pred -cCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCC---cchHHHHHHHHHcCC
Q 013701 345 -ARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINN---ATNAGLLAVRMLGFG 401 (438)
Q Consensus 345 -~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~---~~~Aa~~a~~il~~~ 401 (438)
-....||||. |+.. + . .| +++||..+. +..||-++.++|.-.
T Consensus 209 ~~~~~i~vig~-------d~~~--~---~--~~-~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 254 (295)
T 3lft_A 209 NQSSKKPIYPS-------ATAM--V---E--VG-GLASVVIDQHDLGVATGKMIVQVLKGA 254 (295)
T ss_dssp TTTTCCCEEES-------SHHH--H---T--TT-CCEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEeC-------CHHH--H---h--cC-cEEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 1345677764 1111 2 2 23 578887653 556777777777543
No 339
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=25.50 E-value=3.6e+02 Score=23.98 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=37.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec---------CCChhHHHHHHHH-H-hhcCCe-EEEEEcCC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA---------HRTPDLMFSYASS-A-HERGIE-IIIAGAGG 335 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~---------h~~~~~~~~~~~~-~-~~~g~~-v~i~~ag~ 335 (438)
++|++++- .....-....+.|.+.|+++..- .+. +-+++.+.+.+++ + ...|++ +++.+.++
T Consensus 118 ~rvglltp--y~~~~~~~~~~~l~~~Giev~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT~l 191 (240)
T 3ixl_A 118 RRVALATA--YIDDVNERLAAFLAEESLVPTGC-RSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGGL 191 (240)
T ss_dssp SEEEEEES--SCHHHHHHHHHHHHHTTCEEEEE-EECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTTS
T ss_pred CEEEEEeC--ChHHHHHHHHHHHHHCCCEEecc-ccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 57888863 34555566677888889875322 221 1246667777777 5 566777 44445443
No 340
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=25.34 E-value=2.9e+02 Score=25.02 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCh--hHHHHHHHHHhhcCCeE-EEEEcCCCCCchhhhh----------cCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTP--DLMFSYASSAHERGIEI-IIAGAGGAAHLPGMVA----------ART 347 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~--~~~~~~~~~~~~~g~~v-~i~~ag~~~~l~~~i~----------~~~ 347 (438)
.+.+...++.+..+..|.++-+-.=..++|| +++.+.+.++...|.++ .+|+ ++....+++. .+.
T Consensus 123 ~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKia~--~~~~~~D~l~Ll~~~~~~~~~~~ 200 (258)
T 4h3d_A 123 MGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAV--MPQNEKDVLVLLEATNEMFKIYA 200 (258)
T ss_dssp GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEE--CCSSHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--ccCCHHHHHHHHHHHHHHHHhcC
Confidence 4455566666666677766533322234677 46667777777778774 4433 5555554432 245
Q ss_pred CCCEEEecCCCCCCCChhhHHHhhcCC-CCCceE
Q 013701 348 PLPVIGVPVRASALDGLDSLLSIVQMP-RGVPVA 380 (438)
Q Consensus 348 ~~pVI~~p~~~~~~~g~~~l~s~~~~~-~gip~~ 380 (438)
..|+|+...+ -...+|++.-| .|-|++
T Consensus 201 ~~P~I~~~MG------~~G~~SRi~~~~fGS~lT 228 (258)
T 4h3d_A 201 DRPIITMSMS------GMGVISRLCGEIFGSALT 228 (258)
T ss_dssp SSCBEEEECT------GGGGGGGTCHHHHCBCEE
T ss_pred CCCEEEEeCC------CCChHHHHHHHHhCCceE
Confidence 7899998764 22236666654 565555
No 341
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=25.20 E-value=1e+02 Score=28.16 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=44.9
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcE-EEEEEecCCChhHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH-EVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~-~~~v~s~h~~~~~~~~~ 317 (438)
++++|.+-.=-..-+...++. ..+| ++. +.+.+...++++.+...+-.. ..-.+ =-.+++.+.++
T Consensus 36 ~lVTGas~GIG~aia~~la~~----------G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~d~~~v~~~ 101 (281)
T 4dry_A 36 ALVTGGGTGVGRGIAQALSAE----------GYSV-VIT--GRRPDVLDAAAGEIGGRTGNIVRAVVC-DVGDPDQVAAL 101 (281)
T ss_dssp EEETTTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHHHHHHSSCEEEEEC-CTTCHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC----------CCEE-EEE--ECCHHHHHHHHHHHHhcCCCeEEEEEc-CCCCHHHHHHH
Confidence 567776654333444444331 2345 444 245666677777776654332 22111 14566667776
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 102 ~~~~~~~~g~iD~lvnnAG~~ 122 (281)
T 4dry_A 102 FAAVRAEFARLDLLVNNAGSN 122 (281)
T ss_dssp HHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 655432 2678888888753
No 342
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=25.18 E-value=3.6e+02 Score=23.88 Aligned_cols=81 Identities=9% Similarity=0.089 Sum_probs=47.2
Q ss_pred eEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEe--cCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc-
Q 013701 272 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVS--AHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA- 345 (438)
Q Consensus 272 ~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s--~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~- 345 (438)
+|+++.-..++ ......+.+.+.++|+.+... + .+.+++.-.++++.+...+++-+|+.......+...+..
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIF--ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEE--ECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEe--CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 46666644333 123344456677889876543 4 467777777788777777888766654333333222222
Q ss_pred -CCCCCEEEe
Q 013701 346 -RTPLPVIGV 354 (438)
Q Consensus 346 -~~~~pVI~~ 354 (438)
....|||-+
T Consensus 81 ~~~~iPvV~~ 90 (288)
T 1gud_A 81 WKKGIYLVNL 90 (288)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCeEEEE
Confidence 135688876
No 343
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.06 E-value=3.5e+02 Score=23.77 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=52.3
Q ss_pred CeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC---Cchhhhh
Q 013701 271 PRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA---HLPGMVA 344 (438)
Q Consensus 271 ~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~---~l~~~i~ 344 (438)
.+|+++....++ ......+.+.+.+.|+.+.. .+.+.++++-.+.++.+...+++.+|....... .....+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 678888765444 34555666778888887654 456778888888888888889997776543221 1222222
Q ss_pred --cCCCCCEEEe
Q 013701 345 --ARTPLPVIGV 354 (438)
Q Consensus 345 --~~~~~pVI~~ 354 (438)
.....|||.+
T Consensus 94 ~~~~~~iPvV~~ 105 (298)
T 3tb6_A 94 NLEKNGIPFAMI 105 (298)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHhcCCCEEEE
Confidence 1246788876
No 344
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=24.97 E-value=2.9e+02 Score=22.75 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--hhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~--~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+++.|++ .....+..+++.|...|+++..- |+. +.+-.+.++.+++..++|+++-
T Consensus 32 ~~~lVF~---~~~~~~~~l~~~L~~~~~~~~~~----hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 32 NQVVIFV---KSVQRCIALAQLLVEQNFPAIAI----HRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp SSEEEEC---SSHHHHHHHHHHHHHTTCCEEEE----CTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CcEEEEE---CCHHHHHHHHHHHHhcCCCEEEE----ECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 4564555 34788999999999999986554 664 3444556677776667777764
No 345
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.87 E-value=1.7e+02 Score=26.21 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=50.5
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-..-+...+.. ..+| ++.. .++.....++.+.+...|-.+..-.+- -.+++.+.+++
T Consensus 31 vlVTGas~gIG~aia~~la~~----------G~~V-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~d~~~v~~~~ 97 (269)
T 4dmm_A 31 ALVTGASRGIGRAIALELAAA----------GAKV-AVNY-ASSAGAADEVVAAIAAAGGEAFAVKAD-VSQESEVEALF 97 (269)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEE-EEEE-SSCHHHHHHHHHHHHHTTCCEEEEECC-TTSHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHC----------CCEE-EEEe-CCChHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHH
Confidence 667777654444444444331 2355 3332 335677778888888888765543332 45567777777
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 98 ~~~~~~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 98 AAVIERWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 654332 688999888754
No 346
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=24.79 E-value=2.3e+02 Score=25.25 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHH-cCCc-EEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTM-FSVP-HEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~-~G~~-~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~ 335 (438)
.+.+.+.++.+.+.. .+-. +..-.+- -.+++.+.+++++..+ ..++++|-.||.
T Consensus 40 r~~~~~~~~~~~l~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 40 RDGERLRAAESALRQRFPGARLFASVCD-VLDALQVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp SCHHHHHHHHHHHHHHSTTCCEEEEECC-TTCHHHHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeCC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345555566655554 3322 2222111 3445555555554432 246677777764
No 347
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.79 E-value=50 Score=30.01 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEe
Q 013701 318 ASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGV 354 (438)
Q Consensus 318 ~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~ 354 (438)
++.+++.|++.+++.-..+..+ +.++.....||||+
T Consensus 62 ~~~l~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi 97 (245)
T 3qvl_A 62 IRAGREQGVDGHVIASFGDPGL-LAARELAQGPVIGI 97 (245)
T ss_dssp HHHHHHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEH
T ss_pred HHHHHHCCCCEEEEeCCChhHH-HHHHHHcCCCEECc
Confidence 3344455666444433333344 55555566666665
No 348
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.72 E-value=3.3e+02 Score=23.30 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred CceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHH----------HHHHHHH-cCCcEE
Q 013701 233 QRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKD----------AAKILTM-FSVPHE 301 (438)
Q Consensus 233 g~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~----------~~~~L~~-~G~~~~ 301 (438)
++++ ++++.|.|.--|..-+.+....+... +.+.-++..+ .|...+.. .++.+.. ++=.=-
T Consensus 46 ~~~I-~i~G~G~S~~~A~~~~~~l~~~~~~~-----r~g~~~~~~~--~d~~~~~a~~~d~~~~~~~~~~l~~~~~~~Dv 117 (201)
T 3trj_A 46 GGKV-LVCGNGSSGVIAQHFTSKLLNHFEME-----RPPLPAIALT--GDVATITAVGNHYGFSQIFAKQVAALGNEDDI 117 (201)
T ss_dssp TCCE-EEEESTHHHHHHHHHHHHHHC------------CCCEEETT--SCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCE
T ss_pred CCEE-EEEeCcHhHHHHHHHHHHhcCccCCC-----CCCCceEEcc--CChHHHHHhccCCCHHHHHHHHHHhhCCCCCE
Confidence 4555 68888888877777776665432110 1122113332 23332211 1112222 232223
Q ss_pred EEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 302 VRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 302 ~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
+-+.|..|...++.+.++.+++.|++++.........|... + ....-+|.+|..
T Consensus 118 vi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~-a-~~~d~~l~~~~~ 171 (201)
T 3trj_A 118 LLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNM-Y-NTDDIELRVPSD 171 (201)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGT-C-CTTCEEEEESCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHh-h-ccCCEEEEeCCC
Confidence 45578888899999999999999999765554333344443 1 112457788864
No 349
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=24.68 E-value=1.2e+02 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=26.3
Q ss_pred ecCC--CCCCCChhhHHHhhcCCCCCc-eEEEEeCCcchHHH
Q 013701 354 VPVR--ASALDGLDSLLSIVQMPRGVP-VATVAINNATNAGL 392 (438)
Q Consensus 354 ~p~~--~~~~~g~~~l~s~~~~~~gip-~~tv~i~~~~~Aa~ 392 (438)
||.+ +.-++-+|+.|+.+-|. || |--|.|+.++.+|.
T Consensus 217 vP~GLG~pvfdkLda~LA~A~ms--I~AvKGvEiG~GF~~a~ 256 (365)
T 1um0_A 217 LPIGLGQGLYAKLDAKIAEAMMG--LNGVKAVEIGKGVESSL 256 (365)
T ss_dssp CCSCCSBTTTBCHHHHHHHHHHT--STTEEEEEETTGGGGGG
T ss_pred CCCCCCCcccccchHHHHHHhcC--ccceeeEEeccchhhhh
Confidence 6664 34478899999877774 44 44889998887663
No 350
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=24.61 E-value=1e+02 Score=26.34 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=66.5
Q ss_pred EecCCCHHHHHHHHHHH--HHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----CchhhhhcCCCCC
Q 013701 277 MGSDSDLPVMKDAAKIL--TMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA----HLPGMVAARTPLP 350 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L--~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~----~l~~~i~~~~~~p 350 (438)
.|+.+-.+....+.+.. .++|++++..=+...+ ++.+++.++...+++.+|..+|.-. +|.+.+++ ...|
T Consensus 36 YG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EG---eLId~Ih~A~~~~~dgIIINpgAyTHtSvAlrDAL~~-v~~P 111 (167)
T 3kip_A 36 YGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEG---FIIDRIHEAKRQGVGFVVINAGAYTHTSVGIRDALLG-TAIP 111 (167)
T ss_dssp CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHH---HHHHHHHHHHHTTCCEEEEECGGGGGTCHHHHHHHHH-TTCC
T ss_pred CCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHH---HHHHHHHHhhhcCccEEEEccccceeccHHHHHHHHh-cCCC
Confidence 55554444455555555 6689998877544444 6777887765245787777776543 78888887 5789
Q ss_pred EEEecCCCC-CCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHH
Q 013701 351 VIGVPVRAS-ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRML 398 (438)
Q Consensus 351 VI~~p~~~~-~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il 398 (438)
+|=|=.+.- ... . +|.-++-+.+...++. +=+..-=.+|++.+
T Consensus 112 ~VEVHiSNihaRE--~--FRh~S~~s~~a~GvI~-G~G~~gY~lAl~~l 155 (167)
T 3kip_A 112 FIEVHITNVHQRE--P--FRHQSYLSDKAVAVIC-GLGVYGYTAAIEYA 155 (167)
T ss_dssp EEEEESSCGGGSC--G--GGGCCSSGGGSSEEEE-SSTTHHHHHHHHHH
T ss_pred EEEEEcCCccccc--c--chhcccccccceEEEE-eCChhhHHHHHHHH
Confidence 999987621 111 1 4444444433344554 22333334444444
No 351
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=24.35 E-value=85 Score=24.60 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=24.5
Q ss_pred CCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEec
Q 013701 308 HRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVP 355 (438)
Q Consensus 308 h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p 355 (438)
++.|.+ .+++.+++.+++.+|.+.-+. ....-+..+...||+-+|
T Consensus 94 ~g~~~~--~I~~~a~~~~~dliV~G~~g~-sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 94 IGPLSE--EVKKFVEGKGYELVVWACYPS-AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp CSCHHH--HHHHHHTTSCCSEEEECSCCG-GGTHHHHHHSSSEEEECC
T ss_pred cCCHHH--HHHHHHHhcCCCEEEEeCCCC-chHHHHHHhCCCceEeeC
Confidence 454433 334445666778777665333 444444455666666554
No 352
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=24.33 E-value=2.3e+02 Score=25.42 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=45.6
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHH-cCCcEEEEEEecCCChhHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTM-FSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~-~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
++++|.+..=-..-+...+. ...+| ++. +.+.+...+.+..+.. .|..+..-.+- -.+++.+.++
T Consensus 30 ~lVTGas~GIG~aia~~l~~----------~G~~V-~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~ 95 (277)
T 4fc7_A 30 AFITGGGSGIGFRIAEIFMR----------HGCHT-VIA--SRSLPRVLTAARKLAGATGRRCLPLSMD-VRAPPAVMAA 95 (277)
T ss_dssp EEEETTTSHHHHHHHHHHHT----------TTCEE-EEE--ESCHHHHHHHHHHHHHHHSSCEEEEECC-TTCHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHH----------CCCEE-EEE--eCCHHHHHHHHHHHHHhcCCcEEEEEcC-CCCHHHHHHH
Confidence 66677664433333343332 12355 343 2345666666666643 46554433222 3456667776
Q ss_pred HHHHhhc--CCeEEEEEcCCC
Q 013701 318 ASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~~--g~~v~i~~ag~~ 336 (438)
+++..+. +++++|-.||..
T Consensus 96 ~~~~~~~~g~id~lv~nAg~~ 116 (277)
T 4fc7_A 96 VDQALKEFGRIDILINCAAGN 116 (277)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCcCC
Confidence 6654332 688999888743
No 353
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=24.31 E-value=3.7e+02 Score=23.69 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC--CCchhhhh
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA--AHLPGMVA 344 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~--~~l~~~i~ 344 (438)
+.+|++++.. ++ ......+.+.+.+.|+.+.. .....+++...++++.+...+++.+|...... ..+.. +
T Consensus 8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~-l- 82 (288)
T 2qu7_A 8 SNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKRE-W- 82 (288)
T ss_dssp EEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGG-G-
T ss_pred CCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHH-h-
Confidence 3578888755 33 23344445666778987654 35566777777788887778898766654322 12222 2
Q ss_pred cCCCCCEEEec
Q 013701 345 ARTPLPVIGVP 355 (438)
Q Consensus 345 ~~~~~pVI~~p 355 (438)
...|||.+-
T Consensus 83 --~~iPvV~~~ 91 (288)
T 2qu7_A 83 --LKIPIMTLD 91 (288)
T ss_dssp --GGSCEEEES
T ss_pred --cCCCEEEEe
Confidence 456888763
No 354
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=24.28 E-value=2.2e+02 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHHHHHHHHhh-cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMFSYASSAHE-RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~~~~~~~~~-~g~~v~i~~ag~~ 336 (438)
+.+...++++.+... |..+..-.+- -.+++.+.+++++..+ .|++++|-.||..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~gid~lv~~Ag~~ 96 (260)
T 2z1n_A 40 NREKLEAAASRIASLVSGAQVDIVAGD-IREPGDIDRLFEKARDLGGADILVYSTGGP 96 (260)
T ss_dssp CHHHHHHHHHHHHHHSTTCCEEEEECC-TTCHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEcc-CCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 445555555555543 3233222111 3456666666654432 3588888888743
No 355
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=24.27 E-value=2.3e+02 Score=25.32 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
...+.+....+...|-.+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 56 ADDLAETVALVEKTGRRCISAKVD-VKDRAALESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 666777777777777665443222 45677777777665332 688888888754
No 356
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=24.25 E-value=1.6e+02 Score=22.83 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=21.7
Q ss_pred cCC-cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013701 296 FSV-PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 296 ~G~-~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
.|+ +++..+. +++|.+ .+++.+++.+++.++.++.+
T Consensus 73 ~g~~~~~~~~~--~g~~~~--~I~~~a~~~~~dliV~G~~~ 109 (137)
T 2z08_A 73 TGVPKEDALLL--EGVPAE--AILQAARAEKADLIVMGTRG 109 (137)
T ss_dssp HCCCGGGEEEE--ESSHHH--HHHHHHHHTTCSEEEEESSC
T ss_pred cCCCccEEEEE--ecCHHH--HHHHHHHHcCCCEEEECCCC
Confidence 677 6555443 455433 34455577789988877743
No 357
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=24.22 E-value=2.8e+02 Score=24.17 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhh--------cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHE--------RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--------~g~~v~i~~ag~~ 336 (438)
+.+...+..+.+...|-.+..-.+. -.+++.+.++++...+ ..++++|-.||..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~ 102 (255)
T 3icc_A 41 RKEEAEETVYEIQSNGGSAFSIGAN-LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIG 102 (255)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCCC
T ss_pred chHHHHHHHHHHHhcCCceEEEecC-cCCHHHHHHHHHHHHHHhcccccCCcccEEEECCCCC
Confidence 3455566666666666554332221 2344445555444322 1377777777653
No 358
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=24.19 E-value=3.9e+02 Score=24.87 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
+....-..++..+.++|++.-.....-.++...+.+++..+...|++=+.+..|-
T Consensus 55 ~~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD 109 (310)
T 3apt_A 55 STRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGD 109 (310)
T ss_dssp CSHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CcchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455566777777899999888888888999999999999999999977777653
No 359
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=24.11 E-value=1.5e+02 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.000 Sum_probs=19.4
Q ss_pred EEEEEecC--CCHHHHHHHHHHHHHcCCcEE
Q 013701 273 IGIIMGSD--SDLPVMKDAAKILTMFSVPHE 301 (438)
Q Consensus 273 v~iv~gs~--sD~~~~~~~~~~L~~~G~~~~ 301 (438)
+.|+.+|. +-+..++.+++.|.+.|++++
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~ 33 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVE 33 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEE
Confidence 45666553 346777777888888887644
No 360
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=24.09 E-value=1.5e+02 Score=23.22 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCcE---EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 284 PVMKDAAKILTMFSVPH---EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~---~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
..+.++.+.+...|+++ +..+. +++|. ..+++.+++.+++.++.++.+.
T Consensus 70 ~~l~~~~~~~~~~g~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 70 EIAVQAKTRATELGVPADKVRAFVK--GGRPS--RTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEE--ESCHH--HHHHHHHHHTTCSEEEECSSCT
T ss_pred HHHHHHHHHHHhcCCCccceEEEEe--cCCHH--HHHHHHHHHhCCCEEEEeCCCC
Confidence 34455566677788877 65544 45543 3445555777888888876433
No 361
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=24.05 E-value=3.7e+02 Score=29.30 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred ceeEEEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec------
Q 013701 234 RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA------ 307 (438)
Q Consensus 234 ~~iG~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~------ 307 (438)
..+=..+..|+|.+++.++-....+.-..+| ...-|.- ...=+..+.+.++++++.+++.|+++++-+...
T Consensus 286 g~lD~y~~~Gptp~~Vi~~Y~~LtG~p~lpP--~WalG~~-qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~ 362 (898)
T 3lpp_A 286 GILDFYILLGDTPEQVVQQYQQLVGLPAMPA--YWNLGFQ-LSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYMEDK 362 (898)
T ss_dssp SCEEEEEEEESSHHHHHHHHHHHHCCCCCCC--GGGGSCE-ECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTT
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHhCCCCcCc--chhcCcc-eecccCCCHHHHHHHHHHHHHcCCCceeeEeccccccCC
Confidence 3455566689999999999988888654321 0011211 122245678999999999999999999887632
Q ss_pred -------CCChhHHHHHHHHHhhcCCeEEEEEc
Q 013701 308 -------HRTPDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 308 -------h~~~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
.|=| ...++++++.+.|+++.+.+.
T Consensus 363 ~dFt~D~~~FP-dp~~mv~~Lh~~G~k~vl~id 394 (898)
T 3lpp_A 363 KDFTYDQVAFN-GLPQFVQDLHDHGQKYVIILD 394 (898)
T ss_dssp CTTCCCTTTTT-THHHHHHHHHHTTCEEEEEEC
T ss_pred CcceEChhhCC-CHHHHHHHHHHCCCEEEEEeC
Confidence 2334 467788888999999666554
No 362
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=24.02 E-value=1.1e+02 Score=29.78 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC--CCCC--CChhhHHHhhcCCCCCc-eEEEEeCC
Q 013701 312 DLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR--ASAL--DGLDSLLSIVQMPRGVP-VATVAINN 386 (438)
Q Consensus 312 ~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~--~~~~--~g~~~l~s~~~~~~gip-~~tv~i~~ 386 (438)
+++.+++.++++.|- .+.|++ ..-+-|||++ +.-+ +.+|+-|+.+-|. || +--|.|+.
T Consensus 198 ~~m~~~I~~ak~~GD-----------S~GGvv----evv~~gvP~GLG~pvf~d~kLda~LA~AlmS--I~AvKGvEiG~ 260 (388)
T 1qxo_A 198 QEIKDYIDQIKRDGD-----------TIGGVV----ETVVGGVPVGLGSYVQWDRKLDARLAQAVVS--INAFKGVEFGL 260 (388)
T ss_dssp HHHHHHHHHHHHTTC-----------CBCEEE----EEEEESCCTTCSCSSSGGGCHHHHHHHHHHT--STTEEEEEETT
T ss_pred HHHHHHHHHHHHhCC-----------CCceEE----EEEEecCCCCcCCcccccccchHHHHHHhcC--cCceeEEEECc
Confidence 346667777666543 233332 2235577775 2234 6899999877774 34 44889988
Q ss_pred cchHH
Q 013701 387 ATNAG 391 (438)
Q Consensus 387 ~~~Aa 391 (438)
++.+|
T Consensus 261 GF~~a 265 (388)
T 1qxo_A 261 GFEAG 265 (388)
T ss_dssp GGGGG
T ss_pred chhhh
Confidence 88765
No 363
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=24.01 E-value=2.6e+02 Score=24.91 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=47.3
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEE-ecCCChhHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIV-SAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~-s~h~~~~~~~~ 316 (438)
.|+++|.+-.--..-+...+.. ..+| ++.+ .+...+.++.+.+...|.+-.+.+. .=-.+++.+.+
T Consensus 34 ~vlVTGasggIG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 100 (279)
T 1xg5_A 34 LALVTGASGGIGAAVARALVQQ----------GLKV-VGCA--RTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILS 100 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC----------CCEE-EEEE--CChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHH
Confidence 3677777655444444444431 1245 3332 3566677777777777754222211 11345666666
Q ss_pred HHHHHhh--cCCeEEEEEcCCC
Q 013701 317 YASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~~ 336 (438)
++++..+ .+++++|-.||..
T Consensus 101 ~~~~~~~~~g~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 101 MFSAIRSQHSGVDICINNAGLA 122 (279)
T ss_dssp HHHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHhCCCCCEEEECCCCC
Confidence 6654422 2688888888754
No 364
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=23.80 E-value=1.8e+02 Score=28.26 Aligned_cols=57 Identities=11% Similarity=-0.034 Sum_probs=40.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
..|.|+..++.....+.++++.|...|+.++... +. ..+.+-++.+...|++..|++
T Consensus 330 ~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~----~~-~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 330 LDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDY----LQ-RKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECC----SC-CCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEec----CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 3576776655567788999999999999988763 21 224444556678899966655
No 365
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.77 E-value=2.3e+02 Score=25.18 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
+.+...+..+.+...|-.+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 97 (259)
T 3edm_A 42 AAEGAATAVAEIEKLGRSALAIKAD-LTNAAEVEAAISAAADKFGEIHGLVHVAGGL 97 (259)
T ss_dssp SCHHHHHHHHHHHTTTSCCEEEECC-TTCHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEEcC-CCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3344555666666666554332222 34566666666554332 577777777643
No 366
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=23.74 E-value=3.8e+02 Score=23.71 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=48.0
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
|+.+--|..+.+..+.++.+ ..++|+++.-. +-...+. ....-+|+++.... -.++++..+.+
T Consensus 85 VV~I~vs~~Dil~aL~~a~~----------~~~kIavVg~~-~~~~~~~---~i~~ll~~~i~~~~---~~~~ee~~~~i 147 (225)
T 2pju_A 85 VILIKPSGYDVLQFLAKAGK----------LTSSIGVVTYQ-ETIPALV---AFQKTFNLRLDQRS---YITEEDARGQI 147 (225)
T ss_dssp EEEECCCHHHHHHHHHHTTC----------TTSCEEEEEES-SCCHHHH---HHHHHHTCCEEEEE---ESSHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHh----------hCCcEEEEeCc-hhhhHHH---HHHHHhCCceEEEE---eCCHHHHHHHH
Confidence 55555555555555544432 23578777644 3333333 33344777776553 56788999999
Q ss_pred HHHhhcCCeEEEE
Q 013701 319 SSAHERGIEIIIA 331 (438)
Q Consensus 319 ~~~~~~g~~v~i~ 331 (438)
+++.+.|++|+|.
T Consensus 148 ~~l~~~G~~vVVG 160 (225)
T 2pju_A 148 NELKANGTEAVVG 160 (225)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCCEEEC
Confidence 9999999999885
No 367
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=23.71 E-value=1.6e+02 Score=26.26 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG 335 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~ 335 (438)
.+++++|+|+.+ -.-..+++.|.+.|.++.+... ..|+.++..+..++++..|.++.......
T Consensus 10 ~~k~vlVTGas~--GIG~aia~~la~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 72 (262)
T 3ksu_A 10 KNKVIVIAGGIK--NLGALTAKTFALESVNLVLHYH-QAKDSDTANKLKDELEDQGAKVALYQSDL 72 (262)
T ss_dssp TTCEEEEETCSS--HHHHHHHHHHTTSSCEEEEEES-CGGGHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEec-CccCHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 467779999874 5678899999999998665421 13455667777777777777877766543
No 368
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=23.68 E-value=2.4e+02 Score=21.42 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.1
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHcCCcEEEEEE
Q 013701 271 PRIGIIMGSD---SDLPVMKDAAKILTMFSVPHEVRIV 305 (438)
Q Consensus 271 ~~v~iv~gs~---sD~~~~~~~~~~L~~~G~~~~~~v~ 305 (438)
.+|.|+|-++ ..-+.+..+.+.|.++|++++..-+
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI 55 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNI 55 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEG
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEEC
Confidence 4565666442 2689999999999999999876533
No 369
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=23.63 E-value=3.3e+02 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCCEEEecCC-CCCCCChhhHHHhhcC-----CCCCceEEEEeCC
Q 013701 348 PLPVIGVPVR-ASALDGLDSLLSIVQM-----PRGVPVATVAINN 386 (438)
Q Consensus 348 ~~pVI~~p~~-~~~~~g~~~l~s~~~~-----~~gip~~tv~i~~ 386 (438)
..-||++|+- +...+-+..++..+.- ..|.++++.+.++
T Consensus 69 d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG~Gd 113 (191)
T 1bvy_F 69 GAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGD 113 (191)
T ss_dssp SEEEEEECCBTTBCCTTTHHHHHHHHTCCSSCCTTCCEEEEEEEC
T ss_pred CeEEEEEeecCCCcCHHHHHHHHHHHhccchhhCCCEEEEEEccC
Confidence 3456677763 3333445556666532 4577788766553
No 370
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=23.62 E-value=3e+02 Score=22.35 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=38.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--hhHHHHHHHHHhhcCCeEEEEE
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~--~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+++.|++ .....+..+++.|...|+++..- |+. +..-.+.++.+++..++|+++.
T Consensus 36 ~~~lVF~---~~~~~~~~l~~~L~~~~~~~~~~----hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 36 DSCIIFC---RTKEHVNQLTDELDDLGYPCDKI----HGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp SSEEEEC---SSHHHHHHHHHHHHHTTCCEEEE----CTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CcEEEEE---CCHHHHHHHHHHHHHcCCcEEEE----eCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4564555 34788999999999999986555 765 3444556677776667777764
No 371
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=23.57 E-value=1.5e+02 Score=27.17 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 308 HRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 308 h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
-.+++.+.+++++..+ .+++++|-.||..
T Consensus 89 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 89 VSDAESVDNMFKVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 4567777777766533 2688999999864
No 372
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.49 E-value=2.7e+02 Score=23.28 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred CCeEEEEEecCC-------CHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCC----
Q 013701 270 LPRIGIIMGSDS-------DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAA---- 337 (438)
Q Consensus 270 ~~~v~iv~gs~s-------D~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~---- 337 (438)
..+|+|++.||. |. ...-++..|.++|+++.. .++ .=+ +.+.+.++++-+.+++++|+..|.+.
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Ds-n~~~l~~~l~~~G~~v~~~~iv--~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D 82 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDR-CGPIITEWLAQQGFSSAQPEVV--ADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTD 82 (164)
T ss_dssp CCEEEEEEECHHHHC----CC-HHHHHHHHHHHTTCEECCCEEE--CSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTC
T ss_pred CCEEEEEEECCCCCCCceeeH-HHHHHHHHHHHCCCEEEEEEEe--CCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCc
Confidence 356777776541 11 123456788899998532 222 223 55666666554447899888876554
Q ss_pred Cchhhhhc
Q 013701 338 HLPGMVAA 345 (438)
Q Consensus 338 ~l~~~i~~ 345 (438)
..+.+++.
T Consensus 83 ~t~eal~~ 90 (164)
T 3pzy_A 83 STPDQTVA 90 (164)
T ss_dssp CHHHHHHT
T ss_pred cHHHHHHH
Confidence 34445544
No 373
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=23.38 E-value=1.6e+02 Score=29.39 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=40.5
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEEEEe--cCC-ChhHHHHHHHHHhhcCCeEEEEE
Q 013701 276 IMGSDSDLPVMKDAAKILTMFSVPHEVRIVS--AHR-TPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 276 v~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s--~h~-~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+..+.||...+.++.+.+++.|..+...++- ..+ +|+...++++.+.+.|++.+..+
T Consensus 119 if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 119 VFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALK 178 (464)
T ss_dssp ECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 3446678888888888888888887666521 222 67888888888888888855443
No 374
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=23.36 E-value=3.8e+02 Score=23.57 Aligned_cols=81 Identities=10% Similarity=0.215 Sum_probs=44.5
Q ss_pred eEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhc--C
Q 013701 272 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAA--R 346 (438)
Q Consensus 272 ~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~--~ 346 (438)
+|+++....++ ......+.+.+.+.|+.+.. .+...++++-.+.++.+...+++.+|+.......+...+.. .
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIV--EDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANS 80 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHH
Confidence 46666544333 23334445567778877543 34566677666777777777888666644322232222221 2
Q ss_pred CCCCEEEe
Q 013701 347 TPLPVIGV 354 (438)
Q Consensus 347 ~~~pVI~~ 354 (438)
...|||-+
T Consensus 81 ~~iPvV~~ 88 (283)
T 2ioy_A 81 KNIPVITI 88 (283)
T ss_dssp TTCCEEEE
T ss_pred CCCeEEEe
Confidence 34677765
No 375
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=23.34 E-value=1.9e+02 Score=25.28 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=45.4
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.--..-+...+.. ..+| ++.+ .+.+...+..+.+...|-.+....+. -.+++.+.+.
T Consensus 13 ~vlVtGasggiG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~ 78 (255)
T 1fmc_A 13 CAIITGAGAGIGKEIAITFATA----------GASV-VVSD--INADAANHVVDEIQQLGGQAFACRCD-ITSEQELSAL 78 (255)
T ss_dssp EEEETTTTSHHHHHHHHHHHTT----------TCEE-EEEE--SCHHHHHHHHHHHHHTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHC----------CCEE-EEEc--CCHHHHHHHHHHHHHhCCceEEEEcC-CCCHHHHHHH
Confidence 3677777654444444433321 1244 3332 34555666666676666554433222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 79 ~~~~~~~~~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 79 ADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 654322 2688888888754
No 376
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.31 E-value=2.2e+02 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEE--ecCCChhHHHHHHHHHh
Q 013701 281 SDLPVMKDAAKILTMFSVPHEVRIV--SAHRTPDLMFSYASSAH 322 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~~~~~~v~--s~h~~~~~~~~~~~~~~ 322 (438)
.|.+.+.++++.+.++|... ..++ --.-+|..+.++++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~Ga~~-i~l~DT~G~~~P~~~~~lv~~l~ 195 (298)
T 2cw6_A 153 ISPAKVAEVTKKFYSMGCYE-ISLGDTIGVGTPGIMKDMLSAVM 195 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSE-EEEEETTSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEecCCCCCcCHHHHHHHHHHHH
Confidence 35555555555555555542 1111 11334555555554443
No 377
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=23.25 E-value=2.3e+02 Score=25.42 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec-------------CCChhHHHHHHHHHhhc--CCeEEEEEcC
Q 013701 270 LPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA-------------HRTPDLMFSYASSAHER--GIEIIIAGAG 334 (438)
Q Consensus 270 ~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~-------------h~~~~~~~~~~~~~~~~--g~~v~i~~ag 334 (438)
.+++++|+|+.+ -.-..+++.|.+.|.++.+...+. -.+++.+.+++++..+. +++++|-.||
T Consensus 13 ~~k~vlVTGas~--GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg 90 (269)
T 3vtz_A 13 TDKVAIVTGGSS--GIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAG 90 (269)
T ss_dssp TTCEEEESSTTS--HHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 466779998864 667788889999998865442111 23355666666554332 6889999997
Q ss_pred CC
Q 013701 335 GA 336 (438)
Q Consensus 335 ~~ 336 (438)
..
T Consensus 91 ~~ 92 (269)
T 3vtz_A 91 IE 92 (269)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 378
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=23.09 E-value=2.2e+02 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 309 RTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 309 ~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.+++.+.+++++..+. +++++|-.||..
T Consensus 74 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 103 (271)
T 3ek2_A 74 ADDAQIDALFASLKTHWDSLDGLVHSIGFA 103 (271)
T ss_dssp TCHHHHHHHHHHHHHHCSCEEEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 4566666666655332 577888888754
No 379
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=22.99 E-value=1.7e+02 Score=25.25 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=32.8
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecC
Q 013701 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPV 356 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~ 356 (438)
-+-+.|..|....+.+.++.++++|++++.+.......|. ....-+|-+|.
T Consensus 134 vvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La-----~~aD~~l~~~~ 184 (212)
T 2i2w_A 134 VLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMA-----GTADIEIRVPH 184 (212)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGT-----TCSSEEEEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchH-----HhCCEEEEcCC
Confidence 4455677888888899999999999987554432111222 22345777776
No 380
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.94 E-value=3.4e+02 Score=22.77 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCeEEEEEecCC-----CHHHHHHHHHHHHHcCCcEEE-EEEecCCChhHHHHHHHHHhhc-CCeEEEEEcCCCC----C
Q 013701 270 LPRIGIIMGSDS-----DLPVMKDAAKILTMFSVPHEV-RIVSAHRTPDLMFSYASSAHER-GIEIIIAGAGGAA----H 338 (438)
Q Consensus 270 ~~~v~iv~gs~s-----D~~~~~~~~~~L~~~G~~~~~-~v~s~h~~~~~~~~~~~~~~~~-g~~v~i~~ag~~~----~ 338 (438)
..+++|++.++. |.. ..-++..|.++|+.+.. .++ -=+++.+.+.++++.++ +++++|+..|.+. .
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n-~~~l~~~L~~~G~~v~~~~iv--~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~ 86 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTS-GHYLRDSAQEAGHHVVDKAIV--KENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQ 86 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHH-HHHHHHHHHHTTCEEEEEEEE--CSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCC
T ss_pred CCEEEEEEEeCCCCcccCcc-HHHHHHHHHHCCCeEeEEEEe--CCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCC
Confidence 457888887653 322 23467888999998643 332 33567777777776554 6898888776554 3
Q ss_pred chhhhhc
Q 013701 339 LPGMVAA 345 (438)
Q Consensus 339 l~~~i~~ 345 (438)
.+.+++.
T Consensus 87 t~ea~~~ 93 (172)
T 1mkz_A 87 APEALLP 93 (172)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 4445544
No 381
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=22.66 E-value=2.3e+02 Score=24.91 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=47.0
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.=-..-+.+.+.. ..+| ++... ++.+...++.+.+...|-.+..-.+. -.+++.+.++
T Consensus 9 ~vlITGasggiG~~~a~~l~~~----------G~~V-~~~~r-~~~~~~~~~~~~l~~~~~~~~~~~~D-~~~~~~~~~~ 75 (261)
T 1gee_A 9 VVVITGSSTGLGKSMAIRFATE----------KAKV-VVNYR-SKEDEANSVLEEIKKVGGEAIAVKGD-VTVESDVINL 75 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT----------TCEE-EEEES-SCHHHHHHHHHHHHHTTCEEEEEECC-TTSHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCEE-EEEcC-CChHHHHHHHHHHHhcCCceEEEECC-CCCHHHHHHH
Confidence 3677777654444444444331 1244 33322 25566667777777766554433222 3456666666
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 76 ~~~~~~~~g~id~li~~Ag~~ 96 (261)
T 1gee_A 76 VQSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 654432 2688888888754
No 382
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.64 E-value=4.4e+02 Score=24.02 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEEec------CC-ChhHHHHHHHHHhhcCCeEEEE
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRIVSA------HR-TPDLMFSYASSAHERGIEIIIA 331 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v~s~------h~-~~~~~~~~~~~~~~~g~~v~i~ 331 (438)
+...+.++.+.+++.|+++++.+... .| +|+.+.++++.+.+.|++.+..
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSL 174 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 34555555666666776666554432 12 4566666666665666664433
No 383
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.60 E-value=3.7e+02 Score=23.08 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=45.4
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
|+.+--|..+.++.+.++.+. .++++++.-.. -...+. ..-.-+|+++.... -.++++..+.+
T Consensus 73 VV~I~~s~~Dil~al~~a~~~----------~~kIavvg~~~-~~~~~~---~~~~ll~~~i~~~~---~~~~~e~~~~i 135 (196)
T 2q5c_A 73 SISIKVTRFDTMRAVYNAKRF----------GNELALIAYKH-SIVDKH---EIEAMLGVKIKEFL---FSSEDEITTLI 135 (196)
T ss_dssp EEEECCCHHHHHHHHHHHGGG----------CSEEEEEEESS-CSSCHH---HHHHHHTCEEEEEE---ECSGGGHHHHH
T ss_pred EEEEcCCHhHHHHHHHHHHhh----------CCcEEEEeCcc-hhhHHH---HHHHHhCCceEEEE---eCCHHHHHHHH
Confidence 444444444555544444331 24777776432 222222 23334677766553 35788899999
Q ss_pred HHHhhcCCeEEEE
Q 013701 319 SSAHERGIEIIIA 331 (438)
Q Consensus 319 ~~~~~~g~~v~i~ 331 (438)
+++.+.|++|+|.
T Consensus 136 ~~l~~~G~~vvVG 148 (196)
T 2q5c_A 136 SKVKTENIKIVVS 148 (196)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCeEEEC
Confidence 9999999999885
No 384
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=22.40 E-value=2.2e+02 Score=24.68 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=45.5
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
|+++|.+-.--..-+.+.+.. ..+|.++. ..+.+...++.+.+...|-++..-.+. -.+++.+.+++
T Consensus 4 vlVTGasggiG~~la~~l~~~----------G~~v~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~ 70 (244)
T 1edo_A 4 VVVTGASRGIGKAIALSLGKA----------GCKVLVNY--ARSAKAAEEVSKQIEAYGGQAITFGGD-VSKEADVEAMM 70 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHT----------TCEEEEEE--SSCHHHHHHHHHHHHHHTCEEEEEECC-TTSHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHC----------CCEEEEEc--CCCHHHHHHHHHHHHhcCCcEEEEeCC-CCCHHHHHHHH
Confidence 566676654444444444431 22452322 234556666666677666554333222 34566676666
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 71 ~~~~~~~g~id~li~~Ag~~ 90 (244)
T 1edo_A 71 KTAIDAWGTIDVVVNNAGIT 90 (244)
T ss_dssp HHHHHHSSCCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 554322 578888888754
No 385
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=22.34 E-value=1.9e+02 Score=25.79 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHcCC--cEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC
Q 013701 281 SDLPVMKDAAKILTMFSV--PHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA 336 (438)
Q Consensus 281 sD~~~~~~~~~~L~~~G~--~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~ 336 (438)
.+.+...+..+.+...+- .+..-. .=-.+++.+.++++++ .+++++|-.||..
T Consensus 42 r~~~~~~~~~~~l~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~--g~id~lv~nAg~~ 96 (267)
T 3t4x_A 42 RREENVNETIKEIRAQYPDAILQPVV-ADLGTEQGCQDVIEKY--PKVDILINNLGIF 96 (267)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEE-CCTTSHHHHHHHHHHC--CCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHHHhhCCCceEEEEe-cCCCCHHHHHHHHHhc--CCCCEEEECCCCC
Confidence 345566666666665532 222211 1133455555555432 2477777777653
No 386
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.31 E-value=2.8e+02 Score=21.64 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=20.9
Q ss_pred CCCCEEEecCCC-CCC-C-ChhhHHHhhcC-CCCCceEEEE
Q 013701 347 TPLPVIGVPVRA-SAL-D-GLDSLLSIVQM-PRGVPVATVA 383 (438)
Q Consensus 347 ~~~pVI~~p~~~-~~~-~-g~~~l~s~~~~-~~gip~~tv~ 383 (438)
...-||++|+-. +.. + -+..++..+.- ..|.+++.+.
T Consensus 46 ~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 46 EDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp CSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred CCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 345677788732 212 2 36667766543 5677777444
No 387
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.29 E-value=4.1e+02 Score=23.52 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=48.9
Q ss_pred eEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhh--cC
Q 013701 272 RIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVA--AR 346 (438)
Q Consensus 272 ~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~--~~ 346 (438)
+|+++.-+.++ ......+.+.+.++|+.+. +.+. .++++-.+.++.+...+++.+|+...........+. ..
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~--~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI--KIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEE--EEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEE--EeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 56677654433 2334445566777887654 4444 478887888888888889977766533333333322 22
Q ss_pred CCCCEEEec
Q 013701 347 TPLPVIGVP 355 (438)
Q Consensus 347 ~~~pVI~~p 355 (438)
...|||.+=
T Consensus 81 ~~iPvV~~~ 89 (306)
T 8abp_A 81 YDMKVIAVD 89 (306)
T ss_dssp TTCEEEEES
T ss_pred CCCcEEEeC
Confidence 457888763
No 388
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=22.13 E-value=1.8e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=27.3
Q ss_pred HHHHHHHHHHc-CCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 286 MKDAAKILTMF-SVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 286 ~~~~~~~L~~~-G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
..++.+.+... |..+..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~ 94 (260)
T 1x1t_A 42 IEKVRAGLAAQHGVKVLYDGAD-LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHHHHHHHHHHTSCEEEECCC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHhccCCcEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 55555555544 5444332121 3445666666654322 2688999888754
No 389
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=22.10 E-value=3.2e+02 Score=22.16 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=38.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--hhHHHHHHHHHhhcCCeEEEEEc
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRT--PDLMFSYASSAHERGIEIIIAGA 333 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~--~~~~~~~~~~~~~~g~~v~i~~a 333 (438)
+++.|++ .....+..++..|...|+.+..- |+. +..-.+.++.+++..++|+++..
T Consensus 31 ~~~lVF~---~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 31 TQAVIFC---NTRRKVEELTTKLRNDKFTVSAI----YSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp SCEEEEE---SSHHHHHHHHHHHHHTTCCEEEE----CTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCEEEEE---CCHHHHHHHHHHHHHcCCCEEEE----ECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4565666 34788999999999999886554 664 44445566777776677877653
No 390
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=21.87 E-value=1.9e+02 Score=25.87 Aligned_cols=54 Identities=6% Similarity=-0.057 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEecCCCh----hHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKILTMF-SVPHEVRIVSAHRTP----DLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L~~~-G~~~~~~v~s~h~~~----~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+.+.++.+.+... |-.+..-.+- -.++ +.+.+++++..+ .+++++|-.||..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 105 (276)
T 1mxh_A 45 SEGAAQRLVAELNAARAGSAVLCKGD-LSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAY 105 (276)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEECC-CSSSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ChHHHHHHHHHHHHhcCCceEEEecc-CCCccccHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 455566666666554 5444332222 2334 555555544322 2578888888743
No 391
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=21.84 E-value=2e+02 Score=25.12 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCC
Q 013701 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGG 335 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~ 335 (438)
..++.+.+...|-.+..-.+. -.+++.+.+++++..+. +++++|-.||.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 45 IDETIASMRADGGDAAFFAAD-LATSEACQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEECC-TTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHhcCCceEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344445555555444333222 23455566655443222 57788877764
No 392
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=21.81 E-value=1.6e+02 Score=25.82 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCce-----------eEEEEEEEEeCCCcEEEEEEcCCC
Q 013701 111 ELATDVAHKAVSSLEGA-----------GIFAVELFWTNNGQILLNEVAPRP 151 (438)
Q Consensus 111 ~~i~~~a~~i~~~lg~~-----------G~~~ve~~~~~~g~~~viEiNpR~ 151 (438)
.+.++++.++++..||. |-..+|++..+++..+|+|+-.|-
T Consensus 18 ~~fE~~va~~L~~~Gy~i~~~v~v~~r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 18 YFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEeecccCCCCCCcEEEEEEECCEEEEEEecccc
Confidence 35778889999998884 356899888888889999998775
No 393
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=21.75 E-value=2.9e+02 Score=24.88 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=32.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHh
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAH 322 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~ 322 (438)
++.++|.|.. .....++..|...|.++.+. .|++++..++.+++.
T Consensus 119 ~k~vlViGaG---g~g~a~a~~L~~~G~~V~v~----~R~~~~~~~la~~~~ 163 (271)
T 1nyt_A 119 GLRILLIGAG---GASRGVLLPLLSLDCAVTIT----NRTVSRAEELAKLFA 163 (271)
T ss_dssp TCEEEEECCS---HHHHHHHHHHHHTTCEEEEE----CSSHHHHHHHHHHTG
T ss_pred CCEEEEECCc---HHHHHHHHHHHHcCCEEEEE----ECCHHHHHHHHHHhh
Confidence 4445788873 67888999999999554444 899988887776543
No 394
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=21.74 E-value=2e+02 Score=26.66 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 283 LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 283 ~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
.....++...+...|-.+....+. -.+++.+.+++++..+. +++++|-.||..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~D-v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 125 (322)
T 3qlj_A 71 GSAAQSVVDEITAAGGEAVADGSN-VADWDQAAGLIQTAVETFGGLDVLVNNAGIV 125 (322)
T ss_dssp TSHHHHHHHHHHHTTCEEEEECCC-TTSHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 455666777777777654433222 34566666666554332 678888777753
No 395
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=21.46 E-value=2.2e+02 Score=26.47 Aligned_cols=86 Identities=16% Similarity=0.075 Sum_probs=46.8
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEE--ecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIM--GSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~--gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~ 316 (438)
|+++|.+-.=-..-+...++. ..+|.+.+ ..+.+.+...++.+.+...|..+..-.+- -.+++.+.+
T Consensus 8 vlVTGas~GIG~aia~~L~~~----------G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~D-vtd~~~v~~ 76 (324)
T 3u9l_A 8 ILITGASSGFGRLTAEALAGA----------GHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD-VQSQVSVDR 76 (324)
T ss_dssp EEESSCSSHHHHHHHHHHHHT----------TCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECC-TTCHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHC----------CCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEee-cCCHHHHHH
Confidence 566666644333344443331 12452322 12345666777777777777665433322 235666666
Q ss_pred HHHHHhh--cCCeEEEEEcCC
Q 013701 317 YASSAHE--RGIEIIIAGAGG 335 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~ag~ 335 (438)
++++..+ .+++++|-.||.
T Consensus 77 ~~~~~~~~~g~iD~lVnnAG~ 97 (324)
T 3u9l_A 77 AIDQIIGEDGRIDVLIHNAGH 97 (324)
T ss_dssp HHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 6655432 268899988874
No 396
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=21.28 E-value=2.1e+02 Score=26.06 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=31.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHH
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA 321 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~ 321 (438)
++.++|+|.. .....++..|.+.| ++.+. +|++++..++.+++
T Consensus 128 ~k~vlV~GaG---giG~aia~~L~~~G-~V~v~----~r~~~~~~~l~~~~ 170 (287)
T 1nvt_A 128 DKNIVIYGAG---GAARAVAFELAKDN-NIIIA----NRTVEKAEALAKEI 170 (287)
T ss_dssp SCEEEEECCS---HHHHHHHHHHTSSS-EEEEE----CSSHHHHHHHHHHH
T ss_pred CCEEEEECch---HHHHHHHHHHHHCC-CEEEE----ECCHHHHHHHHHHH
Confidence 4455888863 88889999999999 55444 89988777766544
No 397
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=21.26 E-value=2.9e+02 Score=24.78 Aligned_cols=83 Identities=10% Similarity=0.161 Sum_probs=42.6
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCC-cEEEEEEecCCChhHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSV-PHEVRIVSAHRTPDLMFS 316 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~-~~~~~v~s~h~~~~~~~~ 316 (438)
.|+++|.+-.=-..-+...+.. ..+| ++.+ .+.+...++...+.+.|- .+..-.+- -.+++.+.+
T Consensus 30 ~vlITGasggIG~~la~~l~~~----------G~~V-~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~v~~ 95 (286)
T 1xu9_A 30 KVIVTGASKGIGREMAYHLAKM----------GAHV-VVTA--RSKETLQKVVSHCLELGAASAHYIAGT-MEDMTFAEQ 95 (286)
T ss_dssp EEEESSCSSHHHHHHHHHHHHT----------TCEE-EEEE--SCHHHHHHHHHHHHHHTCSEEEEEECC-TTCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC----------CCEE-EEEE--CCHHHHHHHHHHHHHhCCCceEEEeCC-CCCHHHHHH
Confidence 4677777654344444443331 1245 3332 345666666766766664 23222111 345666666
Q ss_pred HHHHHhh--cCCeEEEEE-cC
Q 013701 317 YASSAHE--RGIEIIIAG-AG 334 (438)
Q Consensus 317 ~~~~~~~--~g~~v~i~~-ag 334 (438)
+++...+ .+++++|-. +|
T Consensus 96 ~~~~~~~~~g~iD~li~naag 116 (286)
T 1xu9_A 96 FVAQAGKLMGGLDMLILNHIT 116 (286)
T ss_dssp HHHHHHHHHTSCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 6654422 267888776 44
No 398
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=21.25 E-value=2e+02 Score=25.69 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEec--------------CCChhHHHHHHHHHhhc--CCeEEEEEcC
Q 013701 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSA--------------HRTPDLMFSYASSAHER--GIEIIIAGAG 334 (438)
Q Consensus 271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~--------------h~~~~~~~~~~~~~~~~--g~~v~i~~ag 334 (438)
+++++|+|+.+ -.-..+++.|.+.|+++.+..-+. -.+++.+.+++++..+. +++++|-.||
T Consensus 28 ~k~vlVTGas~--gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg 105 (260)
T 3un1_A 28 QKVVVITGASQ--GIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAG 105 (260)
T ss_dssp CCEEEESSCSS--HHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 45557777753 555677777777787765442221 12455666666544322 6889998887
Q ss_pred CC
Q 013701 335 GA 336 (438)
Q Consensus 335 ~~ 336 (438)
..
T Consensus 106 ~~ 107 (260)
T 3un1_A 106 VF 107 (260)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 399
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=21.19 E-value=5e+02 Score=24.06 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCC-------ChhHHHHHHHHHhhcCCeEEEEE
Q 013701 284 PVMKDAAKILTMFSVPHEVRIVSAHR-------TPDLMFSYASSAHERGIEIIIAG 332 (438)
Q Consensus 284 ~~~~~~~~~L~~~G~~~~~~v~s~h~-------~~~~~~~~~~~~~~~g~~v~i~~ 332 (438)
+.+.++.+..++.|..+...++.... +|+.+.++++.+.+.|++.+..+
T Consensus 122 ~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 122 HILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 56677788888888887766654322 46778888888777888754443
No 400
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.16 E-value=2.4e+02 Score=20.34 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=33.6
Q ss_pred EecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCC---HHHHHHHHHHHHHcCCc-EEEEE
Q 013701 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSD---LPVMKDAAKILTMFSVP-HEVRI 304 (438)
Q Consensus 241 ~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~-~~~~v 304 (438)
.+|...+-|+..++.++..-- ..+|-|......| ++.++-+++.|.++||+ +.++|
T Consensus 26 stgkeleralqelekalarag--------arnvqitisaendeqakelleliarllqklgykdinvrv 85 (96)
T 2jvf_A 26 STGKELERALQELEKALARAG--------ARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRV 85 (96)
T ss_dssp CSSSHHHHHHHHHHHHHHHHT--------CSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhcc--------ccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 467778888887777766421 1345333333333 33444567888899998 45554
No 401
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=20.84 E-value=2.1e+02 Score=24.07 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCC----CCchhhhhcCCCCCEE
Q 013701 277 MGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGA----AHLPGMVAARTPLPVI 352 (438)
Q Consensus 277 ~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~----~~l~~~i~~~~~~pVI 352 (438)
.|+.+-.+....+.+...++|++++..=+...+ ++.+++.++..+ ++-+|..+|.- =+|.|.+++-...|+|
T Consensus 28 YG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EG---eLId~Ih~a~~~-~dgiIINpgA~THtSvAlrDAl~~v~~~P~V 103 (156)
T 1gtz_A 28 YGSDTLADVEALCVKAAAAHGGTVDFRQSNHEG---ELVDWIHEARLN-HCGIVINPAAYSHTSVAILDALNTCDGLPVV 103 (156)
T ss_dssp HCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHH---HHHHHHHHHHHH-CSEEEEECTTHHHHCHHHHHHHHTSTTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHH---HHHHHHHHhhhc-CcEEEECchhhccccHHHHHHHHhcCCCCEE
Confidence 445554556666677778899999887544444 677888877653 77777777653 3688999887669999
Q ss_pred EecCC
Q 013701 353 GVPVR 357 (438)
Q Consensus 353 ~~p~~ 357 (438)
=|=.+
T Consensus 104 EVHiS 108 (156)
T 1gtz_A 104 EVHIS 108 (156)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 99876
No 402
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=20.83 E-value=4.3e+02 Score=24.19 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=34.9
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCC
Q 013701 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVR 357 (438)
Q Consensus 301 ~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~ 357 (438)
-+-++|-.|...++.+.++.+++.|++++.+.... . ++.. ..++..+|..
T Consensus 82 lvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~--~----La~~-~~~l~~~~e~ 131 (302)
T 1tzb_A 82 LLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG--R----LAQM-GVPTVIVPKA 131 (302)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST--T----GGGS-SSCEEECCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc--h----HHHC-CeeEEeCCCC
Confidence 35557888999999999999999999866554322 3 3444 6666677654
No 403
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=20.83 E-value=1.8e+02 Score=25.93 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=47.4
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+-.=-+.-+...+. ...+| ++.. ..+.....+....+...|-.+..-.+. -.+++.+.+++
T Consensus 28 vlITGas~gIG~~~a~~l~~----------~G~~v-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~v~~~~ 94 (269)
T 3gk3_A 28 AFVTGGMGGLGAAISRRLHD----------AGMAV-AVSH-SERNDHVSTWLMHERDAGRDFKAYAVD-VADFESCERCA 94 (269)
T ss_dssp EEETTTTSHHHHHHHHHHHT----------TTCEE-EEEE-CSCHHHHHHHHHHHHTTTCCCEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHH----------CCCEE-EEEc-CCchHHHHHHHHHHHhcCCceEEEEec-CCCHHHHHHHH
Confidence 56777765433334443332 12245 4443 245566666666667666654443332 34566677766
Q ss_pred HHHhhc--CCeEEEEEcCCC
Q 013701 319 SSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 319 ~~~~~~--g~~v~i~~ag~~ 336 (438)
++..+. +++++|-.||..
T Consensus 95 ~~~~~~~g~id~li~nAg~~ 114 (269)
T 3gk3_A 95 EKVLADFGKVDVLINNAGIT 114 (269)
T ss_dssp HHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 654332 688888888754
No 404
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=20.79 E-value=1.2e+02 Score=29.63 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=26.7
Q ss_pred EEEecCC-CCC---CCChhhHHHhhcCCCCCc-eEEEEeCCcchHH
Q 013701 351 VIGVPVR-ASA---LDGLDSLLSIVQMPRGVP-VATVAINNATNAG 391 (438)
Q Consensus 351 VI~~p~~-~~~---~~g~~~l~s~~~~~~gip-~~tv~i~~~~~Aa 391 (438)
+-|||++ +.. ++.+|+-|+.+-|. || |--|.|+.++.+|
T Consensus 227 ~~gvP~GLG~pv~~f~kLda~LA~AlmS--I~AvKGvEiG~GF~~a 270 (407)
T 2o11_A 227 ALGLPVGLGSFTSGDHRLDSQLAAAVMG--IQAIKGVEIGDGFQTA 270 (407)
T ss_dssp EESCCTTCSCSSSGGGSHHHHHHHHHHT--STTEEEEEETTHHHHT
T ss_pred EecCCCCCCCCcccccchhHHHHHHhcC--cCceeeEEeccchhhh
Confidence 4567775 222 57899999877774 34 4488888887665
No 405
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=20.75 E-value=2.2e+02 Score=25.59 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSY 317 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~ 317 (438)
.|+++|.+-.--..-+...++ ...+| ++. +.+.+...++.+.+...|.++..-.+. -.+++.+.++
T Consensus 46 ~vlITGasggIG~~la~~L~~----------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~d~~~v~~~ 111 (285)
T 2c07_A 46 VALVTGAGRGIGREIAKMLAK----------SVSHV-ICI--SRTQKSCDSVVDEIKSFGYESSGYAGD-VSKKEEISEV 111 (285)
T ss_dssp EEEEESTTSHHHHHHHHHHTT----------TSSEE-EEE--ESSHHHHHHHHHHHHTTTCCEEEEECC-TTCHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHH----------cCCEE-EEE--cCCHHHHHHHHHHHHhcCCceeEEECC-CCCHHHHHHH
Confidence 477888775544444444433 12355 333 234566677777777777665443322 3457777777
Q ss_pred HHHHhh--cCCeEEEEEcCCC
Q 013701 318 ASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 318 ~~~~~~--~g~~v~i~~ag~~ 336 (438)
+++..+ .+++++|-.||..
T Consensus 112 ~~~~~~~~~~id~li~~Ag~~ 132 (285)
T 2c07_A 112 INKILTEHKNVDILVNNAGIT 132 (285)
T ss_dssp HHHHHHHCSCCCEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 765432 3688999888754
No 406
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=20.70 E-value=2.4e+02 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 311 PDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 311 ~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
++.+.+++++..+. +++++|-.||..
T Consensus 65 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 65 EADATAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44445555443222 577777777643
No 407
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=20.59 E-value=2.1e+02 Score=25.22 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=47.2
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCChhHHH
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMF--SVPHEVRIVSAHRTPDLMF 315 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~--G~~~~~~v~s~h~~~~~~~ 315 (438)
.++++|.+-.=-..-+...+.... ...+| ++. +.+.+...++.+.+... |-.+..-.+- -.+++.+.
T Consensus 8 ~~lVTGas~gIG~~ia~~l~~~~~-------~G~~V-~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-v~~~~~v~ 76 (259)
T 1oaa_A 8 VCVLTGASRGFGRALAPQLARLLS-------PGSVM-LVS--ARSESMLRQLKEELGAQQPDLKVVLAAAD-LGTEAGVQ 76 (259)
T ss_dssp EEEESSCSSHHHHHHHHHHHTTBC-------TTCEE-EEE--ESCHHHHHHHHHHHHHHCTTSEEEEEECC-TTSHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHhhc-------CCCeE-EEE--eCCHHHHHHHHHHHHhhCCCCeEEEEecC-CCCHHHHH
Confidence 366777765444444444443110 12345 333 23556667777666654 4444332222 34577777
Q ss_pred HHHHHHhh----cCCe--EEEEEcCCC
Q 013701 316 SYASSAHE----RGIE--IIIAGAGGA 336 (438)
Q Consensus 316 ~~~~~~~~----~g~~--v~i~~ag~~ 336 (438)
++++...+ ..++ ++|-.||..
T Consensus 77 ~~~~~~~~~~~~g~~d~~~lvnnAg~~ 103 (259)
T 1oaa_A 77 RLLSAVRELPRPEGLQRLLLINNAATL 103 (259)
T ss_dssp HHHHHHHHSCCCTTCCEEEEEECCCCC
T ss_pred HHHHHHHhccccccCCccEEEECCccc
Confidence 77776654 2466 888888753
No 408
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=20.55 E-value=2.5e+02 Score=24.30 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHH-HHcCCcEEEEEEecCCChhHHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 282 DLPVMKDAAKIL-TMFSVPHEVRIVSAHRTPDLMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 282 D~~~~~~~~~~L-~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
+.+...++.+.+ ...|-++..-.+. -.+++.+.+++++..+ .+++++|-.||..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~ 91 (250)
T 2cfc_A 35 SAETLEETARTHWHAYADKVLRVRAD-VADEGDVNAAIAATMEQFGAIDVLVNNAGIT 91 (250)
T ss_dssp CHHHHHHHHHHHSTTTGGGEEEEECC-TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEec-CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 344455555544 3334343322222 3455666666654322 2688888888754
No 409
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=20.50 E-value=4.7e+02 Score=23.48 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=10.4
Q ss_pred eEEEEEecCCCHHHHHHHHHH
Q 013701 272 RIGIIMGSDSDLPVMKDAAKI 292 (438)
Q Consensus 272 ~v~iv~gs~sD~~~~~~~~~~ 292 (438)
++..+...-+|.+.+..+.+.
T Consensus 57 ~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 57 EVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp CEEEEECCTTSHHHHHHHHHH
T ss_pred cEEEEEccCCCHHHHHHHHHH
Confidence 343444455555555555533
No 410
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=20.47 E-value=2.7e+02 Score=24.73 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CCeEEEEEecCCC---HHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCC-CCCchhhhhc
Q 013701 270 LPRIGIIMGSDSD---LPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGG-AAHLPGMVAA 345 (438)
Q Consensus 270 ~~~v~iv~gs~sD---~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~-~~~l~~~i~~ 345 (438)
+.+|++++...++ ......+.+.+.+.|+.+.... ....+++...++++.+...+++.+|..... .......+.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~- 85 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVY-SGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQ- 85 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-----------CHHHHHHSSCCSEEEEESCC----CHHHHH-
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEe-CCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHHHH-
Confidence 4577777643322 2344555567778887754430 334455555566777677788866655422 222333333
Q ss_pred CCCCCEEEe
Q 013701 346 RTPLPVIGV 354 (438)
Q Consensus 346 ~~~~pVI~~ 354 (438)
....|||.+
T Consensus 86 ~~~iPvV~~ 94 (290)
T 3clk_A 86 SSDVPYCFL 94 (290)
T ss_dssp CC--CEEEE
T ss_pred hCCCCEEEE
Confidence 245688776
No 411
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=20.35 E-value=62 Score=30.80 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEE
Q 013701 282 DLPVMKDAAKILTMFSVPHEVRI 304 (438)
Q Consensus 282 D~~~~~~~~~~L~~~G~~~~~~v 304 (438)
+.+...++++.|+++|++.-..+
T Consensus 78 ~~~~~~~~~~~l~~~~Id~LvvI 100 (319)
T 1zxx_A 78 EEEGQLAGIEQLKKHGIDAVVVI 100 (319)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEE
Confidence 34467777778888888755543
No 412
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=20.31 E-value=2.3e+02 Score=25.49 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=45.0
Q ss_pred EEEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHH-HcCCcEEEEEEecCCC----hh
Q 013701 238 HITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILT-MFSVPHEVRIVSAHRT----PD 312 (438)
Q Consensus 238 ~Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~-~~G~~~~~~v~s~h~~----~~ 312 (438)
.++++|.+-.=-..-+...+.. ..+| ++.+. +..+.+.++++.+. ..|-.+..-.+- -.+ ++
T Consensus 25 ~~lVTGas~gIG~aia~~L~~~----------G~~V-~~~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~D-v~~~~~~~~ 91 (288)
T 2x9g_A 25 AAVVTGAAKRIGRAIAVKLHQT----------GYRV-VIHYH-NSAEAAVSLADELNKERSNTAVVCQAD-LTNSNVLPA 91 (288)
T ss_dssp EEEETTCSSHHHHHHHHHHHHH----------TCEE-EEEES-SCHHHHHHHHHHHHHHSTTCEEEEECC-CSCSTTHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCeE-EEEeC-CchHHHHHHHHHHHhhcCCceEEEEee-cCCccCCHH
Confidence 3677777654444444444432 1245 33333 22255566666665 556554332222 234 66
Q ss_pred HHHHHHHHHhh--cCCeEEEEEcCCC
Q 013701 313 LMFSYASSAHE--RGIEIIIAGAGGA 336 (438)
Q Consensus 313 ~~~~~~~~~~~--~g~~v~i~~ag~~ 336 (438)
.+.++++...+ .+++++|-.||..
T Consensus 92 ~v~~~~~~~~~~~g~iD~lvnnAG~~ 117 (288)
T 2x9g_A 92 SCEEIINSCFRAFGRCDVLVNNASAF 117 (288)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 66666655432 2688999888754
No 413
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=20.17 E-value=3e+02 Score=24.55 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred EEEecCCHHHHHHHHHHHhhhccCccccCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHH
Q 013701 239 ITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYA 318 (438)
Q Consensus 239 Vi~~G~~~~ea~~ka~~~~~~i~~~~~~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~ 318 (438)
++++|.+..=-+.-+...++. ..+| ++. +.+.+...++++.+ +-.+..-.+- -.+++.+.+++
T Consensus 33 vlVTGas~GIG~aia~~l~~~----------G~~V-i~~--~r~~~~~~~~~~~~---~~~~~~~~~D-l~~~~~v~~~~ 95 (281)
T 3ppi_A 33 AIVSGGAGGLGEATVRRLHAD----------GLGV-VIA--DLAAEKGKALADEL---GNRAEFVSTN-VTSEDSVLAAI 95 (281)
T ss_dssp EEEETTTSHHHHHHHHHHHHT----------TCEE-EEE--ESCHHHHHHHHHHH---CTTEEEEECC-TTCHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHC----------CCEE-EEE--eCChHHHHHHHHHh---CCceEEEEcC-CCCHHHHHHHH
Confidence 566676654444444444331 2245 444 23455555555444 4444332222 45567777777
Q ss_pred HHHhhc-CCeEEEEE
Q 013701 319 SSAHER-GIEIIIAG 332 (438)
Q Consensus 319 ~~~~~~-g~~v~i~~ 332 (438)
+..+.. +++++|..
T Consensus 96 ~~~~~~~~id~lv~~ 110 (281)
T 3ppi_A 96 EAANQLGRLRYAVVA 110 (281)
T ss_dssp HHHTTSSEEEEEEEC
T ss_pred HHHHHhCCCCeEEEc
Confidence 665332 35566665
No 414
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=20.10 E-value=85 Score=31.60 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=22.1
Q ss_pred EEEEEEEEeCCCcEEEEEEcCCCC
Q 013701 129 IFAVELFWTNNGQILLNEVAPRPH 152 (438)
Q Consensus 129 ~~~ve~~~~~~g~~~viEiNpR~~ 152 (438)
+..+|++.+++|+++|+|-|.|..
T Consensus 144 i~~~Dl~r~~dG~~~vlEdn~~~P 167 (474)
T 3n6x_A 144 IAGVDLVRTGENDFYVLEDNLRTP 167 (474)
T ss_dssp EEEEEEEECSSSCEEEEEEECSSC
T ss_pred EEEEEEEECCCCCEEEEEeCCCCC
Confidence 678999999999999999999976
No 415
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=20.08 E-value=2e+02 Score=26.03 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhc--CCeEEEEEcCCC
Q 013701 286 MKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHER--GIEIIIAGAGGA 336 (438)
Q Consensus 286 ~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~--g~~v~i~~ag~~ 336 (438)
+.++++.+...|..+..-.+- -.+++.+.+++++..+. +++++|-.||..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~D-v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 104 (285)
T 3sc4_A 53 IYTAAKEIEEAGGQALPIVGD-IRDGDAVAAAVAKTVEQFGGIDICVNNASAI 104 (285)
T ss_dssp HHHHHHHHHHHTSEEEEEECC-TTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHhcCCcEEEEECC-CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 455566666666654433222 34566666666554332 678888888753
Done!