BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013702
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 3/194 (1%)
Query: 233 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIK 292
+++A GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I
Sbjct: 262 ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIA 321
Query: 293 QIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 352
+I+PL E G L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP
Sbjct: 322 ALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSP 381
Query: 353 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--R 410
+ + G G++LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R
Sbjct: 382 QAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYR 441
Query: 411 INLSRNSKYYMKKL 424
N RNS +++L
Sbjct: 442 SN-GRNSHILVRRL 454
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 38 VSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVL 97
V + SGNFL A+ GV+DG D G ++K D +R +LD G +V LG+S G+
Sbjct: 143 VPLVSGNFLTARPIGVIDGTDXEYAGVIRKTDTAALRFQLDAGNIVWXPPLGHSYGGKTF 202
Query: 98 NCNTYEVATACALAIEADKLICII--DGPILDESGHLIRFLTLQEADSLIRQRVKQS 152
N + + A + A++++A+KL+ + DG I G L L+ QEA SL ++
Sbjct: 203 NLDXVQAAASVAVSLQAEKLVYLTLSDG-ISRPDGTLAETLSAQEAQSLAEHAASET 258
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 3/184 (1%)
Query: 243 GVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESG 302
GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I +I+PL E G
Sbjct: 272 GVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQG 331
Query: 303 ALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 362
L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP+ + G G++
Sbjct: 332 ILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGER 391
Query: 363 LLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--RINLSRNSKYY 420
LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R N RNS
Sbjct: 392 LLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYRSN-GRNSHIL 450
Query: 421 MKKL 424
+++L
Sbjct: 451 VRRL 454
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 38 VSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVL 97
V + SGNFL A+ GV+DG D G ++K D +R +LD G +V + LG+S G+
Sbjct: 143 VPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTF 202
Query: 98 NCNTYEVATACALAIEADKLICII--DGPILDESGHLIRFLTLQEADSLIRQRVKQS 152
N + + A + A++++A+KL+ + DG I G L L+ QEA SL ++
Sbjct: 203 NLDMVQAAASVAVSLQAEKLVYLTLSDG-ISRPDGTLAETLSAQEAQSLAEHAASET 258
>pdb|3E0K|A Chain A, Crystal Structure Of C-Termianl Domain Of
N-Acetylglutamate Synthase From Vibrio Parahaemolyticus
Length = 150
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 278 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF 337
E R A + D+ GI ++I PL E G LVRR+ E+L + + F ++E++G II CAAL+P+
Sbjct: 4 EQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPY 63
Query: 338 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRE 397
+E+ E A + + P+ R +G LL+Y + ++ S ++ +F+LTT + WF+ +GF E
Sbjct: 64 SEERKAEXACVAIHPDYRDGNRGLLLLNYXKHRSKSENINQIFVLTTHSLHWFREQGFYE 123
Query: 398 CSIEMIPEERRKRINLSRNSK 418
++ +P ++ N R SK
Sbjct: 124 VGVDYLPGAKQGLYNFQRKSK 144
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 59 YGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLI 118
YG GEVK V++ + L G + ++++LG + SG++LN N A ++ K+I
Sbjct: 172 YGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKII 231
Query: 119 CII-DGPILDESGHLIRFLTLQ-EADSLIRQ 147
+ G +LD G LI + L E D L +Q
Sbjct: 232 FLTGTGGLLDAEGKLIDSINLSTEYDHLXQQ 262
>pdb|2BUF|A Chain A, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|B Chain B, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|C Chain C, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|D Chain D, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|E Chain E, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|F Chain F, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|G Chain G, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|H Chain H, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|I Chain I, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|J Chain J, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|K Chain K, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|L Chain L, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
Length = 300
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 24 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVV---------DGVDYGATGEVKKVDVTRMR 74
I RHG S+ +G++ + AK+ V + +D G GEV V+V +
Sbjct: 115 INRHGGSA----IGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN 170
Query: 75 ERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILDESGHLI 133
+ G + +++ +G S+GE N N VA A A++A+KL+ + + ++D+ G ++
Sbjct: 171 MLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVL 230
Query: 134 RFLTLQEADSLI 145
L+ ++ + LI
Sbjct: 231 TGLSTEQVNELI 242
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 228 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 274
G L ++ A + GV H++DG + +LLE+F G+GT++++
Sbjct: 250 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 58 DYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKL 117
D G G+VKKV+ + ++ + +++ +G G N N A A ++ A+KL
Sbjct: 138 DIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKL 197
Query: 118 ICIIDGPILDESGHLIRFLTLQEADSLIR 146
I + D + + G LI LT EA+ LIR
Sbjct: 198 ILLTDVDGVLKDGKLISTLTPDEAEELIR 226
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 228 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 272
G + ++ A R GV VH+++G + +LLE+F R G+GTM+
Sbjct: 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 281 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF----- 335
R D +G +++ +P ++ L + D Y +++ +II AL
Sbjct: 40 RKPNPNDFNGFREVYEPFLKF---------RLSQEFDELYTYQKDNRIIGTIALVYKRIK 90
Query: 336 ---------PFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD---MLFLLT 383
EK G + V PE +G+G G LL++ K+ SLG D + F
Sbjct: 91 EKGIWWVPEELXNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNL 150
Query: 384 TRTADWFKSRGFREC 398
+ ++ +GFRE
Sbjct: 151 EAYSYYYXKKGFREI 165
>pdb|3L86|A Chain A, The Crystal Structure Of Smu.665 From Streptococcus Mutans
Ua159
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 59 YGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLI 118
YG G+V ++ + E L+ + IL++LGYS G++LN N +ATA A+A+ ADKLI
Sbjct: 151 YGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLI 210
Query: 119 CIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAV 162
+ + + E+G ++ +T + +++++ + I A + +
Sbjct: 211 LMTNVKGVLENGAVLEKITSHQ----VQEKIDTAVITAGMIPKI 250
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 40 VASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC 99
+ SG F A +D Y G +K V + + G L IL++L ++SG++LN
Sbjct: 144 ITSGVFTA----DYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNV 199
Query: 100 NTYEVATACALAIEADKLICIID--GPILDESGHLIRFLTL-QEADSLIRQ 147
N A A E K++ + + G I +G I + L +E D L++Q
Sbjct: 200 NADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQ 250
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 40 VASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC 99
+ SG F A +D Y G +K V + + G L IL++L ++SG++LN
Sbjct: 144 ITSGVFTA----DYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNV 199
Query: 100 NTYEVATACALAIEADKLICIID--GPILDESGHLIRFLTL-QEADSLIRQ 147
N A A E K++ + + G I +G I + L +E D L++Q
Sbjct: 200 NADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQ 250
>pdb|2RD5|A Chain A, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
pdb|2RD5|B Chain B, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
Length = 298
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 36 VGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGE 95
VG+S G L A+ V + G GEV +VD + +R +D G + +++++ SG+
Sbjct: 133 VGLSGHDGRLLTARP--VPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQ 190
Query: 96 VLNCNTYEVATACALAIEADKLICIID 122
N N VA A A+ A+KLI + D
Sbjct: 191 AYNINADTVAGELAAALGAEKLILLTD 217
>pdb|2JJ4|A Chain A, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|B Chain B, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|C Chain C, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|A Chain A, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|B Chain B, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|C Chain C, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|D Chain D, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|E Chain E, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|F Chain F, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
Length = 321
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 60 GATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLIC 119
G GEV V+ + L+ G + ++S++ +G+ N N VA A A+ A+KLI
Sbjct: 167 GFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLIL 226
Query: 120 ------IIDGPILDESGHLIRFLTLQEADSLIRQRV 149
I++ P ES LI L + ++ LI Q +
Sbjct: 227 LTDTRGILEDPKRPES--LIPRLNIPQSRELIAQGI 260
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 242 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 278
+GV+ H++DG I LLLE+F G+GTM+ Y
Sbjct: 278 QGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYH 314
>pdb|2OZG|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_325469.1) From Anabaena Variabilis Atcc 29413 At
2.00 A Resolution
Length = 396
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 316 LDSFYVVEREGQIIACAALFPFFKEKCGE------VAAIGVSPECRGQGQGDKLLDYI-- 367
L++F V+ RE ++ A+ P + G+ +AA+G++PE RG G L+ +
Sbjct: 47 LENFRVIYREQKVAGGLAILPXGQWWGGQRVPXAGIAAVGIAPEYRGDGAAIALIQHTLQ 106
Query: 368 EKKAASLGLDMLFLLTTRTADWFKSRGFREC 398
E + + +L+ T R ++ G+ +
Sbjct: 107 EISEQDIPISVLYPATQRL---YRKAGYEQA 134
>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
Length = 299
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 45 FLAAKRKGVVDGV--DYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 102
F A +R VDGV D G G+V +V+ + + G + ++S L + G V N N
Sbjct: 132 FTAVRRSVTVDGVATDIGLVGDVDQVNTAAXLDLVAAGRIPVVSTLAPDADGVVHNINAD 191
Query: 103 EVATACALAIEADKLICIID 122
A A A A+ A+KL+ + D
Sbjct: 192 TAAAAVAEALGAEKLLXLTD 211
>pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli
Complexed With Its Substrate N-Acetylglutamate And Its
Substrate Analog Amppnp
pdb|1OH9|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp, N-Acetyl-L-Glutamate And The
Transition-State Mimic Alf4-
pdb|1OHA|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp And N-Acetyl-L-Glutamate
pdb|1OHB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Adp And Sulphate
pdb|2WXB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2WXB|B Chain B, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2X2W|A Chain A, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
pdb|2X2W|B Chain B, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
Length = 258
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 77 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFL 136
L+ G L ++S++G + G+++N N + ATA A + AD ++ ILD G I +
Sbjct: 137 LENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEM 196
Query: 137 TLQEADSLIRQRVKQSEIAANYVKAVAEE-------DITCFGHSDSIGSVYSSQNGKTFS 189
T +A+ LI Q + + A+ DI + H++ + +++ NG
Sbjct: 197 TAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALF---NGMPMG 253
Query: 190 ERRIA 194
R +A
Sbjct: 254 TRILA 258
>pdb|3T7B|A Chain A, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
pdb|3T7B|B Chain B, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
Length = 260
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 34 HEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSS 93
+ VG+ +A GN + ++D + G G+ + ++ L G I+S++G +
Sbjct: 100 NAVGLCLADGNTVTVT---LLDA-ELGHVGKAQPGSAALVQTLLAAGYXPIISSIGITVE 155
Query: 94 GEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQ------ 147
G++ N N + ATA A + AD ++ ILD G I T Q+A+ LI Q
Sbjct: 156 GQLXNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEXTAQKAEQLIAQGIITDG 215
Query: 148 RVKQSEIAANYVKAVAEE-DITCFGHSDSIGSVYSSQNGKTFSER 191
V + A + +++ DI + HS+ + +++ NG R
Sbjct: 216 XVVKVNAALDAARSLGRPVDIASWRHSEQLPALF---NGVPIGTR 257
>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
N-Acyltransferase From Klebsiella Pneumoniae
Subsp.Pneumoniae Mgh 78578
Length = 162
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 325 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 371
+G+ + C A+ +E GE+ + + P+ RGQ G+KLL +E KA
Sbjct: 58 QGEAVGCGAIV-LSEEGFGEMKRVYIDPQHRGQQLGEKLLAALEAKA 103
>pdb|3S7Y|A Chain A, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
pdb|3S7Y|X Chain X, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
Length = 461
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 53 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAI 112
+VD G GE + + + + G IL+ LG + G ++N N A A+
Sbjct: 163 IVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHAL 222
Query: 113 EADKLICII-DGPILDESGHLIRFLTL 138
+ K++ + G +LDE G ++ + L
Sbjct: 223 QPYKVVFLTGTGGLLDEDGDILSSINL 249
>pdb|3S6H|A Chain A, Crystal Structure Of Native MmnagsK
pdb|3S6H|B Chain B, Crystal Structure Of Native MmnagsK
pdb|3S6H|X Chain X, Crystal Structure Of Native MmnagsK
pdb|3S6H|Y Chain Y, Crystal Structure Of Native MmnagsK
Length = 460
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 53 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAI 112
+VD G GE + + + + G IL+ LG + G ++N N A A+
Sbjct: 163 IVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHAL 222
Query: 113 EADKLICII-DGPILDESGHLIRFLTL 138
+ K++ + G +LDE G ++ + L
Sbjct: 223 QPYKVVFLTGTGGLLDEDGDILSSINL 249
>pdb|3S6G|A Chain A, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|B Chain B, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|X Chain X, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|Y Chain Y, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
Length = 460
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 53 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAI 112
+VD G GE + + + + G IL+ LG + G ++N N A A+
Sbjct: 163 IVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHAL 222
Query: 113 EADKLICII-DGPILDESGHLIRFLTL 138
+ K++ + G +LDE G ++ + L
Sbjct: 223 QPYKVVFLTGTGGLLDEDGDILSSINL 249
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 48 AKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL--GYSSSGEVLNCNTYEVA 105
A R G VDGVDY +D TR ++ +D G L+ + + G SG + A
Sbjct: 57 APRPGEVDGVDY------HFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAA 110
Query: 106 TACALAIEAD 115
T + IE D
Sbjct: 111 TGVPVLIEVD 120
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 48 AKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL--GYSSSGEVLNCNTYEVA 105
A R G VDGVDY +D TR ++ +D G L+ + + G SG + A
Sbjct: 60 APRPGEVDGVDY------HFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAA 113
Query: 106 TACALAIEAD 115
T + IE D
Sbjct: 114 TGVPVLIEVD 123
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 347 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTAD----WFKSRGF 395
+IGVSP+ + QG G LL YI+ A G+ L L T +++ GF
Sbjct: 86 SIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRVXATNQEAIRFYEKHGF 138
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 343 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375
G +GV PE RG+G + LL+ +EKK + G
Sbjct: 70 GSAYYLGVHPEFRGRGIANALLNRLEKKLIARG 102
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 320 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 379
YV ++ G +I L + K E+ I V+ +G+G G KLL + + A G L
Sbjct: 40 YVAKQGGSVIGVYVLLET-RPKTXEIXNIAVAEHLQGKGIGKKLLRHAVETAKGYGXSKL 98
Query: 380 FLLTTRTA----DWFKSRGFRECSIEM 402
+ T ++ ++ GFR SI+
Sbjct: 99 EVGTGNSSVSQLALYQKCGFRIFSIDF 125
>pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L-Glutamate Kinase
From Escherichia Coli Complexed With Its Substrate N-
Acetyl-L-Glutamate And Its Substrate Analog Amppnp
Length = 258
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 77 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFL 136
L+ G L ++S++G + G++ N N + ATA A + AD ++ ILD G I
Sbjct: 137 LENGYLPVVSSIGVTDEGQLXNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEX 196
Query: 137 TLQEADSLIRQ------RVKQSEIAANYVKAVAEE-DITCFGHSDSIGSVYSSQNGKTFS 189
T +A+ LI Q + + A + + + DI + H++ + +++ NG
Sbjct: 197 TAAKAEQLIEQGIITDGXIVKVNAALDAARTLGRPVDIASWRHAEQLPALF---NGXPXG 253
Query: 190 ERRIA 194
R +A
Sbjct: 254 TRILA 258
>pdb|3RIO|A Chain A, Crystal Structure Of Glct Cat-Prdi
Length = 180
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 355 RGQGQGDKLLDYIEKKAASLGLDMLFLLTTRT 386
+ Q Q KLLDY+++K + D+++ ++ RT
Sbjct: 68 KEQKQFKKLLDYVDEKLVDISNDVIYHISNRT 99
>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 293
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 209 WSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR-GVQRVHLLDGTIGG----VLLLELF 263
+ +QG + G+ RL LSE + F RR G ++ + G I G VL L++
Sbjct: 61 FPMKQGVMVRGRVRL-----LLSE-GHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIV 114
Query: 264 KR-----DGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRT 308
K+ DG+ T+ R + L G+K+ P++ +++RRT
Sbjct: 115 KKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRT 164
>pdb|1JSN|A Chain A, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|A Chain A, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin
Length = 325
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 273 ASDLYEGTRTAKVTDLSGIKQII--QPLVESGALVRRTDEELLKALDSFYVVEREGQI 328
A D+ E T K+ DL+G+K +I V L +E L + Y+VE++ +
Sbjct: 29 AQDILEKTHNGKLCDLNGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKDNPV 86
>pdb|2REE|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REE|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REF|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
pdb|2REF|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
Length = 224
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 344 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 375
++ A+ + PE + QG GD+LL+++ + A +
Sbjct: 100 QLLAVNILPELQNQGLGDRLLEFMLQYCAQIS 131
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 282 TAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-------EGQIIACAAL 334
T V L+G+K I+QP + + + D L KA+ + E E I+ A
Sbjct: 1626 TRFVAWLNGLK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETA-- 1682
Query: 335 FPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTA--DWF 390
F E+ + A P+ + DKLL+ + K SLGL LL T DWF
Sbjct: 1683 ---FLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGL----LLDTEQELYDWF 1733
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD-----MLFLLTTRTADWFKSRGFR 396
CG + I V+ + +GQG G L+D + ++G D ++ + +++ GF
Sbjct: 96 CGHIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYKIILDCDEKNVKFYEKCGFS 151
Query: 397 ECSIEM 402
+EM
Sbjct: 152 NAGVEM 157
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 342 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD-----MLFLLTTRTADWFKSRGFR 396
CG + I V+ + +GQG G L+D + ++G D ++ + +++ GF
Sbjct: 95 CGHIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYKIILDCDEKNVKFYEKCGFS 150
Query: 397 ECSIEM 402
+EM
Sbjct: 151 NAGVEM 156
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 282 TAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-------EGQIIACAAL 334
T V L+G+K I+QP + + + D L KA+ + E E I+ A
Sbjct: 1407 TRFVAWLNGLK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETA-- 1463
Query: 335 FPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTA--DWF 390
F E+ + A P+ + DKLL+ + K SLGL LL T DWF
Sbjct: 1464 ---FLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGL----LLDTEQELYDWF 1514
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,306,979
Number of Sequences: 62578
Number of extensions: 489290
Number of successful extensions: 1164
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 46
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)