BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013703
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 58/361 (16%)
Query: 118 LRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKR 177
L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T ++
Sbjct: 82 LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVSVKEY 139
Query: 178 AREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDANMLIP 234
+ K + L KRL DP + F WA I +SR + ++R LV ++P
Sbjct: 140 VKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV-----VVP 192
Query: 235 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVNYMHG 281
AD++NHS +D EV AG V+ GE++ + Y
Sbjct: 193 MADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 246
Query: 282 QMNDMLMQRYGFSSP---VNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYY----HNSK 334
+ N L YGF P + + + ++ D L V +G + Y +N
Sbjct: 247 KSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRT 306
Query: 335 ISSDEESFI--------DGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAE 386
+ ++ D ++ + W ++ + E K ++E C+ LA
Sbjct: 307 LPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAG 366
Query: 387 FPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDIYQDRI 436
+ TT +QD+++ + + R L A+ R K+ + ++ + L+ YQ+R
Sbjct: 367 YHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERR 424
Query: 437 L 437
L
Sbjct: 425 L 425
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 58/361 (16%)
Query: 118 LRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKR 177
L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T ++
Sbjct: 78 LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVSVKEY 135
Query: 178 AREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDANMLIP 234
+ K + L KRL DP + F WA I +SR + ++R LV ++P
Sbjct: 136 VKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV-----VVP 188
Query: 235 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVNYMHG 281
AD++NHS +D EV AG V+ GE++ + Y
Sbjct: 189 MADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 242
Query: 282 QMNDMLMQRYGFSSP---VNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYY----HNSK 334
+ N L YGF P + + + ++ D L V +G + Y +N
Sbjct: 243 KSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRT 302
Query: 335 ISSDEESFI--------DGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAE 386
+ ++ D ++ + W ++ + E K ++E C+ LA
Sbjct: 303 LPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAG 362
Query: 387 FPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDIYQDRI 436
+ TT +QD+++ + + R L A+ R K+ + ++ + L+ YQ+R
Sbjct: 363 YHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERR 420
Query: 437 L 437
L
Sbjct: 421 L 421
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 226 VQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 278
V DA M A +NHS +PNC+ D +++ A + + RGEE+T +Y
Sbjct: 115 VVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 167
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 199 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 246
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 197 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 244
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 198 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 245
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 197 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 244
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288
L P +LNHS PNC + +++ A + + GEE+T+ Y+ DMLM
Sbjct: 233 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL-----DMLM 280
>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
Length = 117
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 364 LVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIK 413
+V + + KAV+EL+E+ + ++Q+QK+ + +KE + ++AA++
Sbjct: 63 IVKTTKEKAVQELKEKIETLEVRLNALNRQEQKINEKVKELTQKIQAALR 112
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 232 LIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 279
L P +LNHS PNC + +++ A + + GEE+T+ Y+
Sbjct: 198 LYPSISLLNHSCDPNCSIVFNGP----HLLLRAVRDIEVGEELTICYL 241
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 201 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 260
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 261 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 295
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 201 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 260
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 261 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 295
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 201 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 260
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 261 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 295
V A Q ++ GEE+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 33 SNNSQNNIRAIKASVETPPFP----LFQNPKLEETPADGLEPADPD--FYKIGYVRSMRA 86
SN S+NN+ +A ++ + ++ LE + DPD FY +G + R
Sbjct: 167 SNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAIN-----DPDCSFYTVGNTVADRG 221
Query: 87 YGVEFKEGPDGFGVFASKDIEPRRRARTD 115
YG+ + G VF+ + +E ++ D
Sbjct: 222 YGIALQHGSPYRDVFSQRILELQQSGDMD 250
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 33 SNNSQNNIRAIKASVETPPFP----LFQNPKLEETPADGLEPADPD--FYKIGYVRSMRA 86
SN S+NN+ +A ++ + ++ LE + DPD FY +G + R
Sbjct: 167 SNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAIN-----DPDCSFYTVGNTVADRG 221
Query: 87 YGVEFKEGPDGFGVFASKDIEPRRRARTD 115
YG+ + G VF+ + +E ++ D
Sbjct: 222 YGIALQHGSPYRDVFSQRILELQQSGDXD 250
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 201 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEV 260
P+ V AQ C + L + + P ++NHS PN +K + E
Sbjct: 167 PDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIV--TYKGTLAE- 223
Query: 261 MVNAGQHVRRGEEMTVNYMH-----GQMNDMLMQRYGFSS 295
V A Q + G+E+ +Y+ ND L Y F+
Sbjct: 224 -VRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTC 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,589,301
Number of Sequences: 62578
Number of extensions: 575980
Number of successful extensions: 1273
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 19
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)