Query 013703
Match_columns 438
No_of_seqs 225 out of 1279
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1E-29 2.2E-34 266.1 23.7 301 118-430 112-447 (472)
2 KOG1338 Uncharacterized conser 99.9 4.8E-26 1E-30 221.6 12.2 211 73-295 10-272 (466)
3 PF00856 SET: SET domain; Int 99.6 5.9E-15 1.3E-19 130.3 7.1 53 227-279 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.4 7.2E-13 1.6E-17 114.3 10.4 100 318-422 13-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.5 2.4E-07 5.2E-12 77.4 5.6 49 230-278 68-116 (116)
6 KOG1085 Predicted methyltransf 96.6 0.0017 3.7E-08 62.3 3.7 53 235-288 333-385 (392)
7 KOG4442 Clathrin coat binding 95.8 0.011 2.4E-07 63.2 4.9 45 235-280 193-238 (729)
8 KOG1080 Histone H3 (Lys4) meth 95.7 0.011 2.3E-07 66.8 4.7 72 206-280 913-984 (1005)
9 KOG2589 Histone tail methylase 95.2 0.017 3.7E-07 57.4 3.5 48 230-281 192-239 (453)
10 KOG1079 Transcriptional repres 94.9 0.027 5.8E-07 60.1 4.1 47 235-281 665-711 (739)
11 COG2940 Proteins containing SE 89.0 0.21 4.6E-06 52.9 1.8 48 234-281 404-451 (480)
12 KOG1083 Putative transcription 86.9 0.69 1.5E-05 52.0 4.2 47 235-282 1250-1297(1306)
13 KOG1082 Histone H3 (Lys9) meth 80.5 1.5 3.2E-05 44.8 3.3 48 235-282 272-323 (364)
14 smart00317 SET SET (Su(var)3-9 79.0 1.8 3.8E-05 35.4 2.8 23 89-111 2-25 (116)
15 KOG1338 Uncharacterized conser 58.8 9.9 0.00021 38.8 3.4 71 229-305 269-343 (466)
16 KOG2084 Predicted histone tail 53.6 16 0.00034 38.0 4.2 63 228-294 198-266 (482)
17 COG1188 Ribosome-associated he 51.1 13 0.00029 30.5 2.5 54 199-281 9-62 (100)
18 KOG1141 Predicted histone meth 48.3 11 0.00023 41.9 1.9 58 235-292 1189-1253(1262)
19 KOG2461 Transcription factor B 31.5 40 0.00087 34.9 3.0 32 260-292 124-155 (396)
20 KOG1085 Predicted methyltransf 21.2 71 0.0015 31.4 2.3 25 86-110 255-280 (392)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1e-29 Score=266.08 Aligned_cols=301 Identities=24% Similarity=0.269 Sum_probs=222.0
Q ss_pred HHHHHHHHHHh-CCCCCchHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHH---HHhhcCCCcc
Q 013703 118 LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWE---KNWHSGVPLK 193 (438)
Q Consensus 118 ~~LAl~Ll~e~-~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~---~~~~~~~p~~ 193 (438)
+.++++|+++. .+..|.|.+|+..||... ++|++|..+++..|++++....+..++..+...+. ++... .+..
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS-HPSL 188 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh-cccc
Confidence 67899999998 666699999999999994 78999999999999999999988887766655332 22211 1111
Q ss_pred cc---ccCCCHHHHHHHHHHhhhceeeeccccc---ccccccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccC
Q 013703 194 IK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQH 267 (438)
Q Consensus 194 ~~---~~~~t~e~f~WA~~~V~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~ 267 (438)
+. ...++++.|.||+++|.||+|+...... +......+|+|++||+||++.. +...++..++. +.+++.++
T Consensus 189 ~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~--~~l~~~~~ 265 (472)
T KOG1337|consen 189 FGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA--VELVAERD 265 (472)
T ss_pred ccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc--EEEEEeee
Confidence 11 1227899999999999999999987631 1235789999999999999987 45666666655 77899999
Q ss_pred CCCCceEEEccCCCCCcHHHHHhCCccCCCCCCCeEEecccccccc---chhhhhhhhcCCCcccccceeecCCCCcccc
Q 013703 268 VRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL---DSFLSVFNISGLPEEYYHNSKISSDEESFID 344 (438)
Q Consensus 268 i~~GeEv~isYG~~~~N~~LL~~YGFv~~~Np~D~v~l~~~~~~~~---d~~l~~l~~~gl~~~~~~~~~l~~~~~~~ld 344 (438)
|++||||||+||+++ |++||++|||+.++||+|.|.+.+.+.... ......+...+++.... +.+-..+...
T Consensus 266 v~~geevfi~YG~~~-N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 340 (472)
T KOG1337|consen 266 VSAGEEVFINYGPKS-NAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGE--FSILLTGEPV-- 340 (472)
T ss_pred ecCCCeEEEecCCCc-hHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCce--EEEeecCCch--
Confidence 999999999999995 999999999999999999999987765311 11122233444444322 2222211111
Q ss_pred HHHHHHH---Hhcc------------------CCCCCCCCCCchHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHhcCC
Q 013703 345 GAVIAAA---RTLP------------------TWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSKQDQKMLDSMK 402 (438)
Q Consensus 345 ~~Ll~al---R~l~------------------~~~~~~~~~~~~~E~~~~~~L~~~-~~~~L~~y~TtleeD~~~L~~~~ 402 (438)
..++.+. +.+. .+.....+.+.++|.+.+..+... |...+..+.+++++|+..+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~- 419 (472)
T KOG1337|consen 341 SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDN- 419 (472)
T ss_pred hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccc-
Confidence 0111111 1110 111223456678999999999999 8889999999999999888863
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013703 403 EPRRTLEAAIKYRLHRKLFIDKVIKALD 430 (438)
Q Consensus 403 ~~s~r~~~A~~~R~~eK~IL~~~l~~L~ 430 (438)
.++.+..++..++..+|+||.+.+..+.
T Consensus 420 ~l~~~~~~~~k~~~~~~~iL~~~~~~~~ 447 (472)
T KOG1337|consen 420 ILSKLLELLEKLRTLEKRILEKSLKLLR 447 (472)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5678899999999999999999988776
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.8e-26 Score=221.62 Aligned_cols=211 Identities=15% Similarity=0.232 Sum_probs=167.1
Q ss_pred chhhHHhHhhhcC----CCceeeee---cCC--ceEEEEecCCCCCC----CCC--------------------------
Q 013703 73 PDFYKIGYVRSMR----AYGVEFKE---GPD--GFGVFASKDIEPRR----RAR-------------------------- 113 (438)
Q Consensus 73 ~~~~~~~W~~~~g----~~~v~i~~---~~~--GrGl~A~~di~~ge----vP~-------------------------- 113 (438)
..|. .|++..+ .++|++.. ..+ |+|++|+++|++|| +|+
T Consensus 10 ~~fl--~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Lne~ 87 (466)
T KOG1338|consen 10 KRFL--LWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLNEV 87 (466)
T ss_pred HHHH--HHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhhcC
Confidence 3677 9999877 35677765 233 89999999999998 466
Q ss_pred CCccHHHHHHHHHHhCCCC-CchHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHHhh---cC
Q 013703 114 TDWDLRLACLLLYAFDQDD-NFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWH---SG 189 (438)
Q Consensus 114 ~~w~~~LAl~Ll~e~~g~~-S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~~~---~~ 189 (438)
..|. .|++.|++|..-++ |+|+||++.+|++.++++|+||+++|+..|..+.+.+...+..++|.+.|..... ..
T Consensus 88 gsw~-~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~~~ 166 (466)
T KOG1338|consen 88 GSWG-MLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFKQH 166 (466)
T ss_pred CcHH-HHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHHHh
Confidence 2353 78889999985555 9999999999999999999999999998865555555588888888888876543 22
Q ss_pred CCccccccCCCHHHHHHHHHHhhhceeeeccccc--------ccccccceecchhcccCCCCC-CCceeEEEeeCCeeEE
Q 013703 190 VPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIG--------ALVQDANMLIPYADMLNHSFQ-PNCFFHWRFKDRMLEV 260 (438)
Q Consensus 190 ~p~~~~~~~~t~e~f~WA~~~V~SRaf~~~~~~~--------~~~~~~~~LvP~~Dm~NH~~~-~n~~~~~~~~~~~~~~ 260 (438)
.|..+ ..+++|+|..+++++.+.+|.+..... ..+..+.+|+|.+||+||+.. .|++..++ ++| +
T Consensus 167 ~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~--~Nc--L 240 (466)
T KOG1338|consen 167 CPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYE--DNC--L 240 (466)
T ss_pred Ccchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceecc--Ccc--e
Confidence 34333 337999999999999999999987521 124568999999999999987 56666555 588 5
Q ss_pred EEEeccCCCCCceEEEccCCCCCcHHHHHhCCccC
Q 013703 261 MVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSS 295 (438)
Q Consensus 261 ~l~a~r~i~~GeEv~isYG~~~~N~~LL~~YGFv~ 295 (438)
.|.|.|+|.+|+||+++||.+ ||. |++||.+.
T Consensus 241 ~mva~r~iekgdev~n~dg~~-p~~--l~~l~ka~ 272 (466)
T KOG1338|consen 241 EMVADRNIEKGDEVDNSDGLK-PMG--LLKLTKAL 272 (466)
T ss_pred eeeecCCCCCccccccccccC-cch--hhhhhhhc
Confidence 778999999999999999988 687 77777665
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.56 E-value=5.9e-15 Score=130.25 Aligned_cols=53 Identities=38% Similarity=0.670 Sum_probs=43.8
Q ss_pred cccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccC
Q 013703 227 QDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYM 279 (438)
Q Consensus 227 ~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG 279 (438)
....+|+|++||+||++.+||.+.+...++...+.++|.++|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 46799999999999999999988887433333488999999999999999998
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.43 E-value=7.2e-13 Score=114.29 Aligned_cols=100 Identities=27% Similarity=0.425 Sum_probs=79.5
Q ss_pred hhhhhcCCCcccccceeecCCCCccccHHHHHHHHhccC-------C---------CCCCCCCCchHHHHHHHHHHHHHH
Q 013703 318 SVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPT-------W---------SDGDVPLVPSIERKAVKELQEECR 381 (438)
Q Consensus 318 ~~l~~~gl~~~~~~~~~l~~~~~~~ld~~Ll~alR~l~~-------~---------~~~~~~~~~~~E~~~~~~L~~~~~ 381 (438)
+.++..|+... ..|.+..+++ +|.+|++++|++.. + .....+.+.+||.+++++|...|.
T Consensus 13 ~lL~~~gl~~~--~~f~l~~~~~--~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~~ 88 (128)
T PF09273_consen 13 QLLEEHGLSGD--QTFDLRADGP--LPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLCE 88 (128)
T ss_dssp HHHHHTTS-SE--EEEEEECCSS--SHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCC--ceeeeeCCCC--CCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHHH
Confidence 34667777654 4577777775 68899999999721 1 112356788999999999999999
Q ss_pred HHHHcCCCChHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 013703 382 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFI 422 (438)
Q Consensus 382 ~~L~~y~TtleeD~~~L~~~~~~s~r~~~A~~~R~~eK~IL 422 (438)
.+|+.|+||+|+|+++|.+ .....++++|++||++||+||
T Consensus 89 ~~L~~y~TtleeD~~~L~~-~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 89 ARLSAYPTTLEEDEELLQS-NDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHTTSSS-HHHHHHHCHT-CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHhc-CCCcHHHHHHHHHHHHhHhcC
Confidence 9999999999999999998 456777999999999999998
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.46 E-value=2.4e-07 Score=77.42 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=42.1
Q ss_pred ceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEcc
Q 013703 230 NMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 278 (438)
Q Consensus 230 ~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isY 278 (438)
..+.|+++++||++.|||.+.+...++...+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3489999999999999998887765554347889999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.65 E-value=0.0017 Score=62.28 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=43.7
Q ss_pred hhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccCCCCCcHHHH
Q 013703 235 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 288 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~~N~~LL 288 (438)
+--++||+..+|+.+....-++.-.+++.|.++|.+|||++..||+++ -+.++
T Consensus 333 lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS-kesi~ 385 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS-KESIA 385 (392)
T ss_pred chhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc-hhHHh
Confidence 345899999999988776666666689999999999999999999985 55544
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.011 Score=63.16 Aligned_cols=45 Identities=36% Similarity=0.607 Sum_probs=36.9
Q ss_pred hhcccCCCCCCCceeE-EEeeCCeeEEEEEeccCCCCCceEEEccCC
Q 013703 235 YADMLNHSFQPNCFFH-WRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 280 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~~-~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 280 (438)
++=++||++.|||.+. |.+.+ .+.+-+.|.+.|++||||+..|+-
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~-~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPD-ELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCC-eeEEEEeEecccCCCceeeEeccc
Confidence 5678999999999774 66654 455667899999999999999864
No 8
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=95.72 E-value=0.011 Score=66.84 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=50.7
Q ss_pred HHHHHhhhceeeecccccccccccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccCC
Q 013703 206 WAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 280 (438)
Q Consensus 206 WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 280 (438)
-...+-.|..|.++... .-+..-.-=++=++||++.|||+...-..++...+++.|.|+|.+||||+.+|--
T Consensus 913 ~~~gi~~sYlfrid~~~---ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 913 ERMGIGDSYLFRIDDEV---VVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred hccCcccceeeecccce---EEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccc
Confidence 34455666666665321 0112222237789999999999887765555557999999999999999999964
No 9
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.20 E-value=0.017 Score=57.38 Aligned_cols=48 Identities=35% Similarity=0.516 Sum_probs=35.6
Q ss_pred ceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccCCC
Q 013703 230 NMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 281 (438)
Q Consensus 230 ~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 281 (438)
.-|=| +-++||++.+||+. ...++. ...|++.|||++||||+.-||..
T Consensus 192 LwLGP-aafINHDCrpnCkF--vs~g~~-tacvkvlRDIePGeEITcFYgs~ 239 (453)
T KOG2589|consen 192 LWLGP-AAFINHDCRPNCKF--VSTGRD-TACVKVLRDIEPGEEITCFYGSG 239 (453)
T ss_pred heecc-HHhhcCCCCCCcee--ecCCCc-eeeeehhhcCCCCceeEEeeccc
Confidence 33444 45899999999864 333322 26779999999999999999973
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=94.87 E-value=0.027 Score=60.06 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=36.9
Q ss_pred hhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccCCC
Q 013703 235 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 281 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 281 (438)
.+-++||+..|||+...-...+...+-+.|.|.|.+|||||..|+=.
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 45688999999997766543333347789999999999999999753
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=88.99 E-value=0.21 Score=52.93 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=36.4
Q ss_pred chhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEccCCC
Q 013703 234 PYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 281 (438)
Q Consensus 234 P~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 281 (438)
.+.=++||++.||+........+-..+...+.++|++||||+++||..
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 344489999999986654433232346778999999999999999975
No 12
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=86.90 E-value=0.69 Score=52.03 Aligned_cols=47 Identities=32% Similarity=0.537 Sum_probs=36.9
Q ss_pred hhcccCCCCCCCcee-EEEeeCCeeEEEEEeccCCCCCceEEEccCCCC
Q 013703 235 YADMLNHSFQPNCFF-HWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQ 282 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~-~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~ 282 (438)
.+-+.||++.+||.. .|... |.+.+.|.|.+||.+||||+..|..++
T Consensus 1250 ~~RfinhscKPNc~~qkwSVN-G~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1250 GARFINHSCKPNCEMQKWSVN-GEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred cccccccccCCCCcccccccc-ceeeeeeeecCCCCCCceEEEeccccc
Confidence 344569999999864 56654 445688899999999999999998764
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=80.47 E-value=1.5 Score=44.79 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=35.0
Q ss_pred hhcccCCCCCCCceeEEEeeC----CeeEEEEEeccCCCCCceEEEccCCCC
Q 013703 235 YADMLNHSFQPNCFFHWRFKD----RMLEVMVNAGQHVRRGEEMTVNYMHGQ 282 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~~~~~~~----~~~~~~l~a~r~i~~GeEv~isYG~~~ 282 (438)
++=++||++.||..+..-..+ ....+.+.|.++|.+|+|++..||...
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 456899999998644322211 123466789999999999999999863
No 14
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=78.97 E-value=1.8 Score=35.35 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=18.1
Q ss_pred eeeeecCC-ceEEEEecCCCCCCC
Q 013703 89 VEFKEGPD-GFGVFASKDIEPRRR 111 (438)
Q Consensus 89 v~i~~~~~-GrGl~A~~di~~gev 111 (438)
+++...++ |+||+|+++|++|++
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~ 25 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEF 25 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCE
Confidence 34444555 999999999999993
No 15
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.79 E-value=9.9 Score=38.82 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=51.7
Q ss_pred cceecchhcccCCCCC-CC-ceeEEEeeCCeeEEEEEeccCCCCCceEEEccCCCCCcHHHHHhCC-ccC-CCCCCCeEE
Q 013703 229 ANMLIPYADMLNHSFQ-PN-CFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG-FSS-PVNPWNVIQ 304 (438)
Q Consensus 229 ~~~LvP~~Dm~NH~~~-~n-~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~~~N~~LL~~YG-Fv~-~~Np~D~v~ 304 (438)
..+++|+.+|+|..-. +| ..+-++..++ ..|++.|.+ |.++.++|+... +.++...|| |+- +.-|++.+-
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---~tm~~~R~i--l~ql~nt~teld-~~e~~~syd~ftkkE~~p~~g~l 342 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---DTMRNMRLI--LLQLHNTRTELD-INEFHSSYDTFTKKEVKPAIGKL 342 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---chHHHHHHH--HHHhccchhhhh-hHHHHHhhhhhhhccccccceee
Confidence 6899999999997654 22 1122232222 567788888 999999999996 999999999 444 366888766
Q ss_pred e
Q 013703 305 F 305 (438)
Q Consensus 305 l 305 (438)
+
T Consensus 343 v 343 (466)
T KOG1338|consen 343 V 343 (466)
T ss_pred e
Confidence 5
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=53.59 E-value=16 Score=38.01 Aligned_cols=63 Identities=27% Similarity=0.288 Sum_probs=45.4
Q ss_pred ccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCc-eEEEccCCCC-----CcHHHHHhCCcc
Q 013703 228 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGE-EMTVNYMHGQ-----MNDMLMQRYGFS 294 (438)
Q Consensus 228 ~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~Ge-Ev~isYG~~~-----~N~~LL~~YGFv 294 (438)
...+|.|..=++||+..||+.+.++. .. ..+.+...+.+++ +++++|-... ...+|...|.|.
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~ 266 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFDG--RG--LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFS 266 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEECC--ce--eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhcccee
Confidence 57889999999999999998765553 32 4456777777776 9999998642 123566666673
No 17
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=51.14 E-value=13 Score=30.52 Aligned_cols=54 Identities=13% Similarity=0.333 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhhhceeeecccccccccccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCceEEEcc
Q 013703 199 HDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 278 (438)
Q Consensus 199 ~t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeEv~isY 278 (438)
.-+|.|+|+.-++-+|+..-. |++- -.+.+| + -..++++.++.|++|.+.|
T Consensus 9 mRLDKwL~~aR~~KrRslAk~------------------~~~~-----GrV~vN---G---~~aKpS~~VK~GD~l~i~~ 59 (100)
T COG1188 9 MRLDKWLWAARFIKRRSLAKE------------------MIEG-----GRVKVN---G---QRAKPSKEVKVGDILTIRF 59 (100)
T ss_pred eehHHHHHHHHHhhhHHHHHH------------------HHHC-----CeEEEC---C---EEcccccccCCCCEEEEEe
Confidence 357999999999999998643 3221 145555 2 1337899999999999999
Q ss_pred CCC
Q 013703 279 MHG 281 (438)
Q Consensus 279 G~~ 281 (438)
|..
T Consensus 60 ~~~ 62 (100)
T COG1188 60 GNK 62 (100)
T ss_pred CCc
Confidence 986
No 18
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=48.29 E-value=11 Score=41.95 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=35.8
Q ss_pred hhcccCCCCCCCcee---EEEeeCCeeE-EEEEeccCCCCCceEEEccCCCC---CcHHHHHhCC
Q 013703 235 YADMLNHSFQPNCFF---HWRFKDRMLE-VMVNAGQHVRRGEEMTVNYMHGQ---MNDMLMQRYG 292 (438)
Q Consensus 235 ~~Dm~NH~~~~n~~~---~~~~~~~~~~-~~l~a~r~i~~GeEv~isYG~~~---~N~~LL~~YG 292 (438)
+.-++||++.||..+ .++..+-.+- |.+.+.+-|++|.|++-.|+-.. +..+|+.+.|
T Consensus 1189 lGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1189 LGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 456899999998533 3333222110 23357888999999999998431 2344555444
No 19
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=31.53 E-value=40 Score=34.86 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=27.7
Q ss_pred EEEEeccCCCCCceEEEccCCCCCcHHHHHhCC
Q 013703 260 VMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG 292 (438)
Q Consensus 260 ~~l~a~r~i~~GeEv~isYG~~~~N~~LL~~YG 292 (438)
+..+|.|+|.+||||.+.||... +..|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~-~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEY-AEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccch-HhHhcccCC
Confidence 55689999999999999999985 777777777
No 20
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=21.17 E-value=71 Score=31.39 Aligned_cols=25 Identities=24% Similarity=0.112 Sum_probs=21.0
Q ss_pred CCceeeeecCC-ceEEEEecCCCCCC
Q 013703 86 AYGVEFKEGPD-GFGVFASKDIEPRR 110 (438)
Q Consensus 86 ~~~v~i~~~~~-GrGl~A~~di~~ge 110 (438)
.+++.+....+ ||||+|++.++.|+
T Consensus 255 ~egl~~~~~dgKGRGv~a~~~F~rgd 280 (392)
T KOG1085|consen 255 NEGLLEVYKDGKGRGVRAKVNFERGD 280 (392)
T ss_pred ccceeEEeeccccceeEeecccccCc
Confidence 35677776666 99999999999998
Done!