BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>013704
MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE
YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL
RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR
MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE
AALGDANDDAIKNGSFYG

High Scoring Gene Products

Symbol, full name Information P value
RCA
rubisco activase
protein from Arabidopsis thaliana 7.4e-185
AT1G73110 protein from Arabidopsis thaliana 3.8e-85
psmc6
proteasome (prosome, macropain) 26S subunit, ATPase, 6
gene_product from Danio rerio 1.5e-05
RPT4A
regulatory particle triple-A ATPase 4A
protein from Arabidopsis thaliana 3.4e-05
OsRPT4
26S proteasome regulatory particle triple-A ATPase subunit4
protein from Oryza sativa Japonica Group 3.4e-05
Psmc6
proteasome (prosome, macropain) 26S subunit, ATPase, 6
gene from Rattus norvegicus 4.0e-05
PSMC6
Uncharacterized protein
protein from Gallus gallus 4.1e-05
PSMC6
26S protease regulatory subunit 10B
protein from Bos taurus 4.1e-05
PSMC6
26S protease regulatory subunit 10B
protein from Bos taurus 4.1e-05
PSMC6
26S protease regulatory subunit 10B
protein from Homo sapiens 4.1e-05
PSMC6
26S protease regulatory subunit 10B
protein from Ictidomys tridecemlineatus 4.1e-05
Psmc6
proteasome (prosome, macropain) 26S subunit, ATPase, 6
protein from Mus musculus 4.1e-05
PSMC6
Uncharacterized protein
protein from Canis lupus familiaris 4.2e-05
AT1G45000 protein from Arabidopsis thaliana 4.3e-05
PSMC6
Uncharacterized protein
protein from Gallus gallus 4.4e-05
PSMC6
Uncharacterized protein
protein from Sus scrofa 4.4e-05
RPT4
ATPase of the 19S regulatory particle of the 26S proteasome
gene from Saccharomyces cerevisiae 5.0e-05
RPT4 gene_product from Candida albicans 0.00010
PF13_0033
26S proteasome regulatory subunit, putative
gene from Plasmodium falciparum 0.00025
PF13_0033
26S proteasome regulatory subunit, putative
protein from Plasmodium falciparum 3D7 0.00025
rpt-4 gene from Caenorhabditis elegans 0.00027
rpt-4
Probable 26S protease regulatory subunit 10B
protein from Caenorhabditis elegans 0.00027
Rpt4R
Regulatory particle triple-A ATPase 4-related
protein from Drosophila melanogaster 0.00043
psmC6
26S protease regulatory subunit S10B
gene from Dictyostelium discoideum 0.00054
Rpt4
Regulatory particle triple-A ATPase 4
protein from Drosophila melanogaster 0.00071

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013704
        (438 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2063922 - symbol:RCA "rubisco activase" specie...  1793  7.4e-185  1
TAIR|locus:2032687 - symbol:AT1G73110 species:3702 "Arabi...   852  3.8e-85   1
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros...   131  1.5e-05   1
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr...   128  3.4e-05   1
UNIPROTKB|Q9FXT8 - symbol:OsRPT4 "Os02g0199900 protein" s...   128  3.4e-05   1
RGD|1308825 - symbol:Psmc6 "proteasome (prosome, macropai...   127  4.0e-05   1
UNIPROTKB|Q5ZKX2 - symbol:PSMC6 "Uncharacterized protein"...   127  4.1e-05   1
UNIPROTKB|F1MLV1 - symbol:PSMC6 "26S protease regulatory ...   127  4.1e-05   1
UNIPROTKB|Q2KIW6 - symbol:PSMC6 "26S protease regulatory ...   127  4.1e-05   1
UNIPROTKB|P62333 - symbol:PSMC6 "26S protease regulatory ...   127  4.1e-05   1
UNIPROTKB|P62335 - symbol:PSMC6 "26S protease regulatory ...   127  4.1e-05   1
MGI|MGI:1914339 - symbol:Psmc6 "proteasome (prosome, macr...   127  4.1e-05   1
UNIPROTKB|J9P1N0 - symbol:PSMC6 "Uncharacterized protein"...   127  4.2e-05   1
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi...   127  4.3e-05   1
UNIPROTKB|F1NCS8 - symbol:PSMC6 "Uncharacterized protein"...   127  4.4e-05   1
UNIPROTKB|F1SFE6 - symbol:PSMC6 "Uncharacterized protein"...   127  4.4e-05   1
RGD|2318218 - symbol:LOC100365869 "proteasome (prosome, m...   127  4.4e-05   1
SGD|S000005785 - symbol:RPT4 "ATPase of the 19S regulator...   127  5.0e-05   1
CGD|CAL0005827 - symbol:RPT4 species:5476 "Candida albica...   124  0.00010   1
POMBASE|SPCC1682.16 - symbol:rpt4 "19S proteasome regulat...   123  0.00011   1
GENEDB_PFALCIPARUM|PF13_0033 - symbol:PF13_0033 "26S prot...   120  0.00025   1
UNIPROTKB|Q8IEQ1 - symbol:PF13_0033 "26S proteasome regul...   120  0.00025   1
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd...   120  0.00027   1
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re...   120  0.00027   1
FB|FBgn0036224 - symbol:Rpt4R "Regulatory particle triple...   118  0.00043   1
DICTYBASE|DDB_G0284517 - symbol:psmC6 "26S protease regul...   117  0.00054   1
FB|FBgn0028685 - symbol:Rpt4 "Regulatory particle triple-...   116  0.00071   1


>TAIR|locus:2063922 [details] [associations]
            symbol:RCA "rubisco activase" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0009507
            "chloroplast" evidence=ISM;IDA;NAS] [GO:0030234 "enzyme regulator
            activity" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
            [GO:0046863 "ribulose-1,5-bisphosphate carboxylase/oxygenase
            activator activity" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP;RCA] [GO:0010319 "stromule" evidence=IDA] [GO:0042742
            "defense response to bacterium" evidence=IEP;RCA] [GO:0016020
            "membrane" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0009753 "response to jasmonic acid stimulus" evidence=IEP]
            [GO:0010150 "leaf senescence" evidence=IMP] [GO:0000165 "MAPK
            cascade" evidence=RCA] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009595 "detection of biotic stimulus"
            evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
            [GO:0009744 "response to sucrose stimulus" evidence=RCA]
            [GO:0009814 "defense response, incompatible interaction"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009867
            "jasmonic acid mediated signaling pathway" evidence=RCA]
            [GO:0010114 "response to red light" evidence=RCA] [GO:0010155
            "regulation of proton transport" evidence=RCA] [GO:0010200
            "response to chitin" evidence=RCA] [GO:0010218 "response to far red
            light" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
            metabolic process" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0031348
            "negative regulation of defense response" evidence=RCA] [GO:0043900
            "regulation of multi-organism process" evidence=RCA] [GO:0050832
            "defense response to fungus" evidence=RCA] [GO:0009416 "response to
            light stimulus" evidence=IEP] InterPro:IPR003959 Pfam:PF00004
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005618 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009753 GO:GO:0048046 GO:GO:0009409
            GO:GO:0042742 GO:GO:0009941 GO:GO:0043531 GO:GO:0010150
            GO:GO:0009416 GO:GO:0009535 GO:GO:0010287 GO:GO:0010319
            EMBL:AC003000 UniGene:At.25263 EMBL:X14212 EMBL:M86720
            EMBL:AY052703 EMBL:AF325049 EMBL:AY056108 EMBL:BT000710
            EMBL:AY088487 IPI:IPI00518163 IPI:IPI00526733 PIR:S04048 PIR:T01002
            PIR:T01003 RefSeq:NP_565913.1 RefSeq:NP_850320.1 UniGene:At.25299
            UniGene:At.25319 UniGene:At.47493 ProteinModelPortal:P10896
            SMR:P10896 IntAct:P10896 STRING:P10896 SWISS-2DPAGE:P10896
            World-2DPAGE:0003:P10896 PaxDb:P10896 PRIDE:P10896 ProMEX:P10896
            EnsemblPlants:AT2G39730.1 GeneID:818558 KEGG:ath:AT2G39730
            TAIR:At2g39730 eggNOG:NOG316327 HOGENOM:HOG000243931
            InParanoid:P10896 OMA:HIAKNFM PhylomeDB:P10896 ProtClustDB:PLN00020
            Genevestigator:P10896 GO:GO:0046863 Uniprot:P10896
        Length = 474

 Score = 1793 (636.2 bits), Expect = 7.4e-185, P = 7.4e-185
 Identities = 343/439 (78%), Positives = 378/439 (86%)

Query:     1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPXXXXXXXXXXXXXXXXXQQRILSKSFKVVS 59
             MAA VSTVGA+N A PL +NGS   ++  P                   +  + SFKV++
Sbjct:     1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59

Query:    60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
                E+KQT  DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct:    60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118

Query:   120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
             LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct:   119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178

Query:   180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
              AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct:   179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238

Query:   240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
             GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct:   239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298

Query:   300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
             RMEKFYWAPTREDRIGVC GIFRTD +  EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct:   299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358

Query:   360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
             K++  +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct:   359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418

Query:   420 EAALGDANDDAIKNGSFYG 438
             +AALGDAN DAI  G+FYG
Sbjct:   419 QAALGDANADAIGRGTFYG 437


>TAIR|locus:2032687 [details] [associations]
            symbol:AT1G73110 species:3702 "Arabidopsis thaliana"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0010027 "thylakoid membrane organization" evidence=RCA]
            [GO:0016117 "carotenoid biosynthetic process" evidence=RCA]
            InterPro:IPR003959 Pfam:PF00004 EMBL:CP002684 GO:GO:0005524
            GO:GO:0009535 HOGENOM:HOG000243931 ProtClustDB:PLN00020
            UniGene:At.11687 UniGene:At.43232 EMBL:AF361834 EMBL:AY078044
            EMBL:AK118942 IPI:IPI00532099 RefSeq:NP_177454.1
            ProteinModelPortal:Q9AST9 SMR:Q9AST9 STRING:Q9AST9 PRIDE:Q9AST9
            ProMEX:Q9AST9 EnsemblPlants:AT1G73110.1 GeneID:843642
            KEGG:ath:AT1G73110 TAIR:At1g73110 InParanoid:Q9AST9 OMA:VEPVIMS
            PhylomeDB:Q9AST9 Genevestigator:Q9AST9 Uniprot:Q9AST9
        Length = 432

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 173/346 (50%), Positives = 236/346 (68%)

Query:    82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
             D  +I  G   GM+D +F      G    ++  +DY  +  R  S ++     YIAP+F+
Sbjct:    89 DNVNIAVGARSGMIDDVFIGDF-LGKDSDIV--FDYRQKATR--SFEHLQGDYYIAPSFL 143

Query:   140 DKVVVHITKNFLNLP--NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197
             DKV VHI KN+L  P  N+K+PLILGIWGGKGQGK+FQ EL+F  MG+ P++MSAGELES
Sbjct:   144 DKVAVHIVKNYL-APSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELES 202

Query:   198 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
               AGEP +LIR RYR A+ +I+ +GKM  L IND+DAG GR G  TQ TVNNQ+V  TLM
Sbjct:   203 DRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLM 261

Query:   257 NIADNPTNVQLPGMYNQEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315
             N+ADNPT V +   + + +   RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + 
Sbjct:   262 NLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVN 321

Query:   316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG-IERIGKRL 374
             + S ++  D + ++D++ +VD FP Q++DF+GALR+R YD  + KW+ E G +E +GK L
Sbjct:   322 IVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVL 381

Query:   375 VNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
             +  K+    P F  P+ T++ LLE G  L+ EQ+ +   +L+ +Y+
Sbjct:   382 LRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 427


>ZFIN|ZDB-GENE-030131-304 [details] [associations]
            symbol:psmc6 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
            EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
            EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
            UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
            GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
            Uniprot:Q6DRD2
        Length = 389

 Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR+++      P  + R+ +    SG I +  ++  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>TAIR|locus:2159996 [details] [associations]
            symbol:RPT4A "regulatory particle triple-A ATPase 4A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
            IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
            ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
            PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
            KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
            OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
        Length = 399

 Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 49/200 (24%), Positives = 95/200 (47%)

Query:   150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
             FL +  +K P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+
Sbjct:   165 FLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223

Query:   210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
              +  A    ++ + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G
Sbjct:   224 MFNYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDG 272

Query:   270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRT 323
               N     +V +I+  N    L   L+R GR+++    P    + R+ +     +GI + 
Sbjct:   273 FDNLG---KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKH 329

Query:   324 DNVPKEDIVKLVDTFPGQSI 343
               +  E IVKL + F G  +
Sbjct:   330 GEIDYEAIVKLAEGFNGADL 349


>UNIPROTKB|Q9FXT8 [details] [associations]
            symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
            sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
            GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
            EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
            OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
            EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
            STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
            KEGG:osa:4328642 Uniprot:Q9FXT8
        Length = 400

 Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 50/200 (25%), Positives = 95/200 (47%)

Query:   150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
             FL +  +K P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+
Sbjct:   166 FLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIRE 224

Query:   210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
              +  A D     + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G
Sbjct:   225 MFGYARD----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDG 273

Query:   270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRT 323
                 +E  +V +I+  N    L   L+R GR+++    P    + R+ V     +GI + 
Sbjct:   274 F---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKH 330

Query:   324 DNVPKEDIVKLVDTFPGQSI 343
               +  E +VKL + F G  +
Sbjct:   331 GEIDYEAVVKLAEGFNGADL 350


>RGD|1308825 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
            complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
            GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
            IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
            STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
            InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
            Uniprot:Q32PW9
        Length = 381

 Score = 127 (49.8 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 269

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329

Query:   338 FPGQSI 343
             F G  +
Sbjct:   330 FNGADL 335


>UNIPROTKB|Q5ZKX2 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
            EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
            UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
            GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
            Uniprot:Q5ZKX2
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>UNIPROTKB|F1MLV1 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
            UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
            Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>UNIPROTKB|Q2KIW6 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
            IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
            ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
            KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
            OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>UNIPROTKB|P62333 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IC]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
            EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
            EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
            PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
            ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
            MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
            REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
            PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
            KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
            H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
            neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
            PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
            CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
            Uniprot:P62333
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>UNIPROTKB|P62335 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:43179 "Spermophilus tridecemlineatus" [GO:0022624
            "proteasome accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
            SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>MGI|MGI:1914339 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
            EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
            IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
            ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
            PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
            REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
            Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
            InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
            GermOnline:ENSMUSG00000021832 Uniprot:P62334
        Length = 389

 Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   338 FPGQSI 343
             F G  +
Sbjct:   338 FNGADL 343


>UNIPROTKB|J9P1N0 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
            Uniprot:J9P1N0
        Length = 395

 Score = 127 (49.8 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   178 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 233

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 283

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   284 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 343

Query:   338 FPGQSI 343
             F G  +
Sbjct:   344 FNGADL 349


>TAIR|locus:2028200 [details] [associations]
            symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
            "proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
            vesicle transport" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
            RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
            SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
            EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
            GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
            Uniprot:Q9MAK9
        Length = 399

 Score = 127 (49.8 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 49/200 (24%), Positives = 96/200 (48%)

Query:   150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
             FL +  +K P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+
Sbjct:   165 FLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223

Query:   210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
              +  A    ++ + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G
Sbjct:   224 MFNYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDG 272

Query:   270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRT 323
                 ++  +V +I+  N    L   L+R GR+++    P    + R+ +     SGI + 
Sbjct:   273 F---DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKH 329

Query:   324 DNVPKEDIVKLVDTFPGQSI 343
               +  E IVKL + F G  +
Sbjct:   330 GEIDYEAIVKLGEGFNGADL 349


>UNIPROTKB|F1NCS8 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
            IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
            Uniprot:F1NCS8
        Length = 403

 Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   338 FPGQSI 343
             F G  +
Sbjct:   352 FNGADL 357


>UNIPROTKB|F1SFE6 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
            TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
            Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
            ArrayExpress:F1SFE6 Uniprot:F1SFE6
        Length = 403

 Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   338 FPGQSI 343
             F G  +
Sbjct:   352 FNGADL 357


>RGD|2318218 [details] [associations]
            symbol:LOC100365869 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
            GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
            UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
            KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
        Length = 403

 Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291

Query:   284 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR++ K +   P  + R+ +    +G I +   +  E IVKL D 
Sbjct:   292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351

Query:   338 FPGQSI 343
             F G  +
Sbjct:   352 FNGADL 357


>SGD|S000005785 [details] [associations]
            symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IMP] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IMP] [GO:0032968 "positive regulation
            of transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI] [GO:0019904 "protein domain specific binding"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
            GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
            PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
            ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
            MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
            EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
            NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
            Uniprot:P53549
        Length = 437

 Score = 127 (49.8 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 51/194 (26%), Positives = 90/194 (46%)

Query:   156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
             +K P  + ++G  G GK+   + V A +G N I   A  +     GE A++IR+ +  A 
Sbjct:   212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270

Query:   216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
                K+ + C +F++++DA  GR    ++ T  ++ +  TLM +       Q+ G  N  +
Sbjct:   271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320

Query:   276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
                  II+  N   TL   L+R GR+++    P   +  R+ +     + + +T     E
Sbjct:   321 TK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377

Query:   330 DIVKLVDTFPGQSI 343
               VK+ D F G  I
Sbjct:   378 AAVKMSDGFNGADI 391


>CGD|CAL0005827 [details] [associations]
            symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
            RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
            GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
            KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
        Length = 428

 Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 51/194 (26%), Positives = 89/194 (45%)

Query:   156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
             +K P  + ++G  G GK+   + V A +G N I   A  +     GE A+LIR+ +  A 
Sbjct:   203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261

Query:   216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
                K+ + C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    + 
Sbjct:   262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 308

Query:   276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGV----CSGIFRTDNVPKE 329
               +  II+  N   TL   L+R GR+++      P    R+ +     S + +      E
Sbjct:   309 LGQTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368

Query:   330 DIVKLVDTFPGQSI 343
               VK+ D F G  I
Sbjct:   369 AAVKMSDGFNGADI 382


>POMBASE|SPCC1682.16 [details] [associations]
            symbol:rpt4 "19S proteasome regulatory subunit Rpt4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISM] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=NAS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
            PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
            STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
            GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
            NextBio:20800360 Uniprot:O74445
        Length = 388

 Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 53/246 (21%), Positives = 111/246 (45%)

Query:   150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
             FL +  +K P  + ++G  G GK+     V A +G+N + + +  +     GE A++IR+
Sbjct:   158 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIRE 216

Query:   210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
              +  A    K+ + C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G
Sbjct:   217 MFGYA----KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDG 265

Query:   270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCS----GIFRT 323
                 +   +  II+  N   TL   L+R GR+++    P   +  R+ +       + + 
Sbjct:   266 F---DYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQ 322

Query:   324 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 383
               +  E +VKL D   G  +         +   E R ++ +  +    +++ + K+   T
Sbjct:   323 GEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGT 382

Query:   384 FEQPKM 389
              +  K+
Sbjct:   383 IDYQKL 388


>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory
            subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
            GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
            GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
            PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
            KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
 Identities = 46/194 (23%), Positives = 90/194 (46%)

Query:   156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
             +K P  + ++G  G GK+     + + +  N + +    +     GE A++IR+ +  A 
Sbjct:   168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYA- 226

Query:   216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
                K+ + C +F++++DA  GR    +Q T  ++ +  TLM + ++     L G    EE
Sbjct:   227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273

Query:   276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
                V II+  N    L   L+R GR+++    P   +  RI +     + + +  ++  E
Sbjct:   274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333

Query:   330 DIVKLVDTFPGQSI 343
              + +L D F G  +
Sbjct:   334 SVCRLCDGFNGADL 347


>UNIPROTKB|Q8IEQ1 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory subunit,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
            RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
            EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
            EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
 Identities = 46/194 (23%), Positives = 90/194 (46%)

Query:   156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
             +K P  + ++G  G GK+     + + +  N + +    +     GE A++IR+ +  A 
Sbjct:   168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYA- 226

Query:   216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
                K+ + C +F++++DA  GR    +Q T  ++ +  TLM + ++     L G    EE
Sbjct:   227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273

Query:   276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
                V II+  N    L   L+R GR+++    P   +  RI +     + + +  ++  E
Sbjct:   274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333

Query:   330 DIVKLVDTFPGQSI 343
              + +L D F G  +
Sbjct:   334 SVCRLCDGFNGADL 347


>WB|WBGene00004504 [details] [associations]
            symbol:rpt-4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
 Identities = 55/228 (24%), Positives = 106/228 (46%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A++IR+ +  A D     + 
Sbjct:   189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G    +   +V +I+
Sbjct:   245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294

Query:   284 TGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR+++      P  + R+ +     + I +   +  E +VKL D 
Sbjct:   295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354

Query:   338 FPGQSI-------DFFGALRAR---VYDDEVRKWISEVG-IERIGKRL 374
             F    +         F A+RA    V D++  K + +VG  +R+  +L
Sbjct:   355 FSAADLRNVCTEAGMF-AIRAEREFVIDEDFMKAVRKVGDAKRLETKL 401


>UNIPROTKB|O17071 [details] [associations]
            symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
            species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
 Identities = 55/228 (24%), Positives = 106/228 (46%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A++IR+ +  A D     + 
Sbjct:   189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G    +   +V +I+
Sbjct:   245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294

Query:   284 TGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR+++      P  + R+ +     + I +   +  E +VKL D 
Sbjct:   295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354

Query:   338 FPGQSI-------DFFGALRAR---VYDDEVRKWISEVG-IERIGKRL 374
             F    +         F A+RA    V D++  K + +VG  +R+  +L
Sbjct:   355 FSAADLRNVCTEAGMF-AIRAEREFVIDEDFMKAVRKVGDAKRLETKL 401


>FB|FBgn0036224 [details] [associations]
            symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
            species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
            GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
            UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
            STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
            KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
            InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
            NextBio:813228 Uniprot:Q9VTQ9
        Length = 398

 Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
 Identities = 45/186 (24%), Positives = 87/186 (46%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     + ++M  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   +V +I+
Sbjct:   237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 286

Query:   284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
               N   TL   L+R GR+++    P      R D + +    + +   +  E +VKL D 
Sbjct:   287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346

Query:   338 FPGQSI 343
             F G  +
Sbjct:   347 FNGADL 352


>DICTYBASE|DDB_G0284517 [details] [associations]
            symbol:psmC6 "26S protease regulatory subunit S10B"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
            EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
            OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
        Length = 393

 Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
 Identities = 48/199 (24%), Positives = 93/199 (46%)

Query:   146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 205
             I + F+ +  +K P  + ++G  G GK+     + + +  N + + +  +     GE A+
Sbjct:   159 IPELFIRV-GIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESAR 217

Query:   206 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 265
             +IR+ +  A D     + C +F++++DA  GR    ++ T  ++ +  TLM + +     
Sbjct:   218 VIREMFGYARD----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN----- 266

Query:   266 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSG 319
             Q+ G    +   +V II+  N    L   L+R GR+++    P   +  R+ V     + 
Sbjct:   267 QMDGF---DTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAAN 323

Query:   320 IFRTDNVPKEDIVKLVDTF 338
             I +  +V  E I KL D F
Sbjct:   324 ITKHGDVDYEAIAKLADGF 342


>FB|FBgn0028685 [details] [associations]
            symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:1901838 "positive regulation of transcription of nuclear large
            rRNA transcript from RNA polymerase I promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
            regulatory region sequence-specific DNA binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
            GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
            TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
            ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
            PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
            OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
            Uniprot:Q8SZ19
        Length = 397

 Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
 Identities = 45/186 (24%), Positives = 87/186 (46%)

Query:   164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235

Query:   224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
             C +F++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   +V +I+
Sbjct:   236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285

Query:   284 TGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
               N   +L   L+R GR+++    P    + R+ +       I +   +  E IVKL D 
Sbjct:   286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345

Query:   338 FPGQSI 343
             F G  +
Sbjct:   346 FNGADL 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      438       421   0.00083  118 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  27
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  243 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.18u 0.12s 34.30t   Elapsed:  00:00:02
  Total cpu time:  34.18u 0.13s 34.31t   Elapsed:  00:00:02
  Start:  Sat May 11 14:20:57 2013   End:  Sat May 11 14:20:59 2013

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